BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] (423 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] gi|254040223|gb|ACT57019.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH Sbjct: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT Sbjct: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 Query: 421 PFF 423 PFF Sbjct: 421 PFF 423 >gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 448 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/423 (71%), Positives = 363/423 (85%), Gaps = 1/423 (0%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFLSP+ESV+ FVRSLV PAHILVAVSGGSDS+GLLIALHS+LSD SF IK SAISVDH Sbjct: 1 MFLSPVESVKSFVRSLVCPAHILVAVSGGSDSIGLLIALHSILSDNSFRAIKISAISVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 +R+ AKDEV+YV D+CSRL I H+VV WK+ KP+TGLMAAAR+ARYALI ++A I AT Sbjct: 61 GIRDEAKDEVKYVFDICSRLGIPHAVVVWKDQKPKTGLMAAARKARYALIVDYAMKIGAT 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 L++TAHTFDDQLETVYMRSQRDYAEKGMGLSG+ +T+LYD+ LWI+RPFL CRREDIRSF Sbjct: 121 LVVTAHTFDDQLETVYMRSQRDYAEKGMGLSGIPETVLYDMRLWIARPFLCCRREDIRSF 180 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 LLQRNI WCEDPSN DDRFERVRVRR ++DID H +Y K++KF++LR+ VNN VA LIP+ Sbjct: 181 LLQRNIGWCEDPSNADDRFERVRVRRLIQDIDPHKMYRKIEKFRNLRIAVNNNVATLIPQ 240 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 YL VH +S+IA+S+++LNID LL YLL+VS AICGG+ S PGYRSMERV+ +LK+ K+G Sbjct: 241 YLKVHCQSVIALSENVLNIDLILLSYLLKVSIAICGGKTSFPGYRSMERVIAYLKNQKQG 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 C+SIGRVVIDRR NFLWITRAVR+LPT+ L+ +ET VWDGRY+F N S+ I+IG + Y Sbjct: 301 CISIGRVVIDRRVNFLWITRAVRDLPTVKLHFKETAVWDGRYRFTNSSNESIRIGAKVYN 360 Query: 361 KA-DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419 K D SG+P I+AQRA SS+PS+EGG+P++APFSRF+T FDLPVA+A SISF KVFIP+ Sbjct: 361 KEMDFSSGMPSIVAQRAFSSLPSEEGGEPVIAPFSRFITIFDLPVAHAISISFDKVFIPQ 420 Query: 420 LPF 422 PF Sbjct: 421 SPF 423 >gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3] gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3] Length = 445 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 162/440 (36%), Positives = 248/440 (56%), Gaps = 29/440 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P+ + R FV +L P HIL+A+SGGSDS GLL+A H ++ +++ SA++VDH L Sbjct: 13 VAPLAAARSFVENLRKPVHILIAISGGSDSTGLLLATHEARAEAGSDRVQLSAVTVDHAL 72 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + DE VS +C+ L I H+V W + KP +G+ A+R ARY+LI+ A I A L+ Sbjct: 73 RAESADEAHKVSLLCAELGIPHTVRRWDDPKPASGISEASRLARYSLIAGVASDIGADLV 132 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MT HT DQ ETV MR+ R + + +GL+GM D +LY WI RPFL C R++IR F+L Sbjct: 133 MTGHTLGDQRETVAMRAARSGSSENLGLAGMADAVLYGGRHWIMRPFLTCERQEIRDFVL 192 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRVKVNNAVAMLI 238 R+ W +DPSN + R+ERVRVR+ + D A +K + + + A + Sbjct: 193 SRSRGWFDDPSNDNARYERVRVRQSLSGSPPPFDAQA-AVKRQAYSE-------KTAFFL 244 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + + V ++ +S + L D + L V A GG+ P SM+RV+ FLK+G+ Sbjct: 245 QQNVEVFHATLARLSDEGLMPDLPEFRHGLAVLIANLGGRAYFPAASSMDRVLQFLKTGE 304 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 G +++GRV++DRR + L++ R RN+P L + +WD R+ +N S + I Sbjct: 305 NGRITVGRVLLDRRKDGLYLFREHRNMPELQVEAGGQGLWDDRFLVKNTSAFPVNIAAGR 364 Query: 359 ----YRKADVPSGIPPIIAQRALSSMP----------SKEGG---KPLLAPFSRFMTKFD 401 A + +PP IA++A++ +P S EG P LAPF F+ +FD Sbjct: 365 TGGIVDAAALFPAVPPGIAKQAMAILPQIATLVPPRASPEGAISIVPRLAPFDLFLPRFD 424 Query: 402 LPVAYAFSISFGKVFIPRLP 421 L +A A ++ FG+ P+ P Sbjct: 425 LELANAIAVLFGRAAYPQPP 444 >gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium tumefaciens str. C58] gi|61216678|sp|Q8U9L7|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium tumefaciens str. C58] Length = 443 Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 165/436 (37%), Positives = 243/436 (55%), Gaps = 23/436 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P+ + FV SL P HILVA+SGGSDS GLL+AL + G ++ SA++VDH L Sbjct: 13 VAPLAAASAFVESLRKPTHILVAISGGSDSTGLLLALQEAKAADDDG-LRLSAVTVDHAL 71 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + DE R V+ +C+ L I H+ W KP +GL A+R ARY LI++ A+ I A L+ Sbjct: 72 RPESADEARKVAMLCAELGIPHTTRRWDGPKPASGLSEASRLARYRLIADVAREIGADLV 131 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 ++ HT DQ ETV MR+ R +GLSGM D +LYD +LWI RPFL C R+ IR ++ Sbjct: 132 VSGHTIGDQRETVAMRAARSGGSDNLGLSGMADAVLYDAHLWIMRPFLACERQVIRDYVS 191 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R+ W +DPSN + R+ERVRVR+ + H+ R ++ A+ + + Sbjct: 192 SRSRHWLDDPSNENIRYERVRVRQTLP----HSPIALDDSTAVRRQMLSERTAVFLRERA 247 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 V ++ ++ D +N D + L A GG+ P SMERV+ FLK+G+ G + Sbjct: 248 QVFHAALARLADDDVNPDLPEFRHGLAALIAALGGRSYFPAASSMERVLRFLKTGETGRM 307 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI-----QIGPQ 357 ++GRV++DRR + L+I R RNLP L + VWD R+ +N SD I ++G Sbjct: 308 TVGRVLLDRRRDGLYIFREQRNLPELQIESSGQAVWDDRFLVKNGSDFPINVAAGRVGTA 367 Query: 358 SYRKADVPSGIPPIIAQRALSSMP----SKEGG--------KPLLAPFSRFMTKFDLPVA 405 + A PS P + + A++ +P + EG P LAPF F+ +FDL +A Sbjct: 368 AQAAALFPSA-PSGVVKPAMAGLPQIAAAAEGWVSTPEVAITPRLAPFDLFLPRFDLELA 426 Query: 406 YAFSISFGKVFIPRLP 421 A + FG+ P+ P Sbjct: 427 NAIANLFGRPAYPQPP 442 >gi|190893272|ref|YP_001979814.1| cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CIAT 652] gi|190698551|gb|ACE92636.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CIAT 652] Length = 458 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 167/455 (36%), Positives = 238/455 (52%), Gaps = 47/455 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++R F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ A LI+ Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYELLAESAERFGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT+DDQ ET+ MR R SG+ D +L+D WI RP L R DIRSFL + Sbjct: 127 TGHTYDDQRETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 R ++W +DPSN D ++ERVRVRR + + D+ A + + R+ +++A A + Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSPDPATETDIRAAWKE-------RLALSSAAAEWL 235 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 +Y T+ + + D L D +L Y L A+ GGQ PG MER++LF + Sbjct: 236 DRYFTLQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNE 295 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 +++GRVV D R + L++ R R + L L E VWDGR++ N S + +I Q Sbjct: 296 PRRMTVGRVVFDLRRDGLYLARESRGILPLTLRSGEAGVWDGRFEAANGSGATTRIEAQG 355 Query: 359 ----------------YRKADVPS-GIPPIIAQRALSSMPSKEGGK-------------- 387 +R S G+P +RA++S P G + Sbjct: 356 AAARKDLGGARDSCDEHRNEGGESRGLPKAAWKRAVASAPVLSGEEVPLSPESIQAIHLT 415 Query: 388 PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 P APF RF+T+FD A S F +PF Sbjct: 416 PYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGVPF 450 >gi|222086970|ref|YP_002545504.1| cell cycle protein MesJ/cytosine deaminase-related protein [Agrobacterium radiobacter K84] gi|221724418|gb|ACM27574.1| cell cycle protein MesJ/cytosine deaminase-related protein [Agrobacterium radiobacter K84] Length = 429 Score = 270 bits (689), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 161/422 (38%), Positives = 234/422 (55%), Gaps = 16/422 (3%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P + F+ SL PAHILVA+SGGSDS GLL AL L + SA ++DH LR Sbjct: 4 PEAAAADFIHSLFKPAHILVAISGGSDSTGLLAALAEHLKSLPNSDVTLSAATIDHGLRA 63 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A +E R V+ C+ L IAH W+ KP++G+MAAAREARY L++E + I+A +I+T Sbjct: 64 EAAEEAREVAAFCASLGIAHVARRWEGEKPKSGIMAAAREARYGLLAEISAEISANVIVT 123 Query: 125 AHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AHT DDQ ET+ MR+ R + E G G +G+ + +L+D +WI+RPFL CRR DIR++L Sbjct: 124 AHTIDDQRETLAMRTARLNEGEAGAG-TGISEAMLFDRRIWIARPFLACRRADIRAYLNG 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R +SW DPSN D R+ER+R R+ + R ++ A + +++ Sbjct: 183 RGMSWLNDPSNEDVRYERIRTRKSLLQ---EPALFPAPDAAAARAALSADAAAWLGEHVA 239 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 VH + AIS+ L+ D ++ Y L AA+ GG+ PG M R++ F+ G+ G + Sbjct: 240 VHAGVLCAISRKALSADEGVIAYALSYLAAVFGGEPYGPGRERMRRILDFIGEGRPGRRT 299 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA- 362 G VV D R + L++ R R++ L+L +WDGR+Q N + I + A Sbjct: 300 AGGVVFDLRRDGLYLMRESRDIRPLVLAAGADGIWDGRFQIGNHGAAAICVEATGTTGAM 359 Query: 363 DVPSGIPPIIAQRALSSMP----SKEGG------KPLLAPFSRFMTKFDLPVAYAFSISF 412 + P G+P QRA + +P EG P LAPF RF+T+F+L A + Sbjct: 360 EFPEGLPKGAVQRAGAVLPKVVAGDEGAAASVTIAPYLAPFDRFLTRFNLTFANRLAACL 419 Query: 413 GK 414 G+ Sbjct: 420 GR 421 >gi|327193463|gb|EGE60359.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CNPAF512] Length = 501 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 240/483 (49%), Gaps = 75/483 (15%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++R F+ SL PA ILVA+SGGSDS GLL+ L + K A +VDH LR Sbjct: 7 SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKASLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAR+ARY L++E A+ A LI+ Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAARKARYELLAESAERFGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT+DDQ ET+ MR R SG+ D +L+D WI RP L R DIRSFL + Sbjct: 127 TGHTYDDQCETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 R ++W +DPSN D ++ERVRVRR + + D+ A + + R+ +++A A + Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSADPATETDIRAAWKE-------RLALSSAAAEWL 235 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 ++ + + + D L D +L Y L A+ GGQ PG MER++LF + Sbjct: 236 DRHFRLQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNE 295 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 +++GRVV D R + L++ R R + L L P E VWDGR++ N S + I+I Q Sbjct: 296 PRRMTVGRVVFDLRRDGLYLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQG 355 Query: 359 YRKADVPS---------------------------------------------GIPPIIA 373 R + +P+ G+P Sbjct: 356 ARSSPIPAPVTGIQPPRVGAVNDSTVPDESAARKDLGARDSCDERRNEGGESRGLPKAAW 415 Query: 374 QRALSSMPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419 +RA++S P G + P APF RF+T+FD A S F Sbjct: 416 KRAVASAPVLSGEEVPLSPESIQAINLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAG 475 Query: 420 LPF 422 LPF Sbjct: 476 LPF 478 >gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli Kim 5] Length = 493 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 239/485 (49%), Gaps = 72/485 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPHAAILQFLASLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHRLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ + A LI Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGDKPKTGVMAAAREARYDLLAESAERLGANLIA 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L++ WI RP L R DIR+FL + Sbjct: 127 TGHTLDDQRETLQMRGMRTEQVS----SGIADAVLFNRRFWILRPLLFSSRADIRAFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W EDPSN D ++ERVR+RR R A+ ++ + R +++ A + ++ Sbjct: 183 RGVPWIEDPSNEDVKYERVRIRR--RLSADPAMETDIRAAWEARRALSSRAADWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + +S D L D +L Y L A+ GGQ +PG M R++ F G+ G ++ Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMARLLSFATGGEPGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358 IGRVV DRR + L+ TR R + +IL P E VWDGR++ N S + I Q+ Sbjct: 301 IGRVVFDRRRDGLYFTRESRGIVPMILRPGEAGVWDGRFEAVNGSGETVTIKAQATHYSL 360 Query: 359 ------YRKADVPSGIPPIIA--------------------------------------- 373 R DV +PP + Sbjct: 361 IPVSSGLRPRDVTGILPPRVGAVDDSTKQGESSAPKDLGALDSCDEHRNEGEWSRGLPKA 420 Query: 374 --QRALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISFGKVFI 417 +RA++S P+ G PL APF RF+T+FD A S F Sbjct: 421 AWKRAVASAPAFAVDGHPLSLQSVGSIHLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPY 480 Query: 418 PRLPF 422 LPF Sbjct: 481 AGLPF 485 >gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234] gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234] Length = 445 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 154/434 (35%), Positives = 224/434 (51%), Gaps = 22/434 (5%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I + R F+RS + P ILVA+SGGSDS GLL+ALH+ L F A +VDH LR Sbjct: 6 IAAARRFLRSFIKPGRILVAISGGSDSKGLLVALHAALGTADFEGFSLVACTVDHALRSD 65 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + DE V C+ L I H V W KP+ G+ AAAR RY +++E A A I T Sbjct: 66 SADEAAAVGAFCAGLGIPHQVCRWPGDKPRAGIQAAARLKRYDMLAEAAAVFRADCIATG 125 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ET+ MR RD + G G +GM +LY W+ RPFL RR DIR++L R Sbjct: 126 HTLDDQNETIAMRGARDQGQ-GHGSAGMAAAMLYGRRTWVLRPFLGLRRADIRAYLGGRG 184 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I W +DPSN + FER RVR + + ++ LR+ + A+L+ ++L VH Sbjct: 185 IGWFDDPSNENPLFERARVR---ASLAASGVAPPPRRGGQLRMASSARAAVLLGEHLRVH 241 Query: 246 MRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + + + ID L A+ GG+ LPG ++ER+ FL+SG+ G ++ Sbjct: 242 EGLVAEVAAAQAGRIDDPDWRRALMTVGAVIGGREHLPGRATIERLSGFLRSGEAGRMTA 301 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI---QIGPQSYRK 361 GRVV DRR + L++ R RNLP L + E+ WDGR+ ++ +L + +R+ Sbjct: 302 GRVVFDRRRSGLYLYREPRNLPALRIGANESGTWDGRFNITSVGTALTICAEAEGGVWRQ 361 Query: 362 ADVPSGIPPIIAQRA--------------LSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407 +G+P +A+RA L S ++ + + P+ F+ FD +A Sbjct: 362 RLFAAGLPEGVAKRASLVAPRVAPEDVGSLGSTAAEAKVECRIGPYDTFLPGFDRIMADT 421 Query: 408 FSISFGKVFIPRLP 421 + FG+ P P Sbjct: 422 IGLLFGRDRYPAPP 435 >gi|241206181|ref|YP_002977277.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860071|gb|ACS57738.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 491 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 170/483 (35%), Positives = 238/483 (49%), Gaps = 70/483 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQLAILQFLTSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLYAATVDHALR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L IAH+++ W+ KP+TG+MAAAREARY L++ AK A LI+ Sbjct: 67 AGSADEAREVAALCASLGIAHTIMIWQGDKPKTGIMAAAREARYGLLATAAKEFKADLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HTFDDQ ET+ MR R +G+ D +L+D + WI RP L R DIR+FL + Sbjct: 127 TGHTFDDQRETLQMRGMRTEQVS----TGIADAVLFDRSFWILRPLLFSTRADIRAFLKE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D +ERVR+RR + +D + ++ + R +++ A + ++ Sbjct: 183 RGVPWIDDPSNEDTTYERVRMRRQL-SVD-AGVERTIQAACEERPALSSKGAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + D L D +L Y L AA+ GGQ PG MERV+ F+ + G ++ Sbjct: 241 LHGGLLGQVMPDGLRQDRAVLNYALGRLAAVFGGQPFAPGRVQMERVLAFVTGSEPGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI--------- 354 GRVV D R + L++ R R + L+L P E VWDGR+ +N + I + Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLLLQPGEAGVWDGRFYARNGLSTSIAVEAATLYAPS 360 Query: 355 ---------------GPQSYRKADVPSGIPPIIAQ------------------------- 374 P+S D I I AQ Sbjct: 361 FLSSDLTRELSEESSAPKSLGANDTSRFIESITAQTRGGWIPVTSTGMRGRMHHLPKAAW 420 Query: 375 -RALSSMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419 RA++S P S EG P APF RF+T+FD A S F R Sbjct: 421 KRAVASAPVLSAEGNLLTEECARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYAR 480 Query: 420 LPF 422 LP Sbjct: 481 LPL 483 >gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4] gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4] Length = 454 Score = 259 bits (661), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 136/423 (32%), Positives = 228/423 (53%), Gaps = 19/423 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +SP ++ F+ + P +LVA+SGGSDS GLL+ALH L + A ++DH L Sbjct: 28 ISPEAAIAAFLDRINDPLRLLVAISGGSDSTGLLLALHEQLQAMPAKTVTLHAATIDHGL 87 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R+ + E V+ +C+ L I H + W KP+TG+ AAAR ARY L++E AK I+A I Sbjct: 88 RDGSAAEAETVAALCATLGIPHEIRRWTGDKPKTGISAAARAARYQLLAEIAKEIDAAAI 147 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT DDQ+ET+ MR +R + GL+GM +++L++ ++WI+RP LR RR+ IR FL Sbjct: 148 LTGHTADDQIETIAMREKRSRNPRATGLAGMAESVLFENSIWITRPLLRSRRQAIRVFLQ 207 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R W +DPSN + +ER R+R + L Q+ R+ ++ A L+ + Sbjct: 208 DRGHGWVDDPSNDNPAYERARIRAHLSTDQQPGLP------QNERLSLSQGAAALVSTHA 261 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 T+ + ++ + + +L + L+ A GGQ PG ++ R++ + V Sbjct: 262 TMPLPGLVDLDNALFEAPRPILCHALQALIATVGGQPHGPGQDALVRLIALCEQPPGARV 321 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR-- 360 ++GR + R + +++ R RNLP I+ P ET +WDGR+ N+ + ++ P + Sbjct: 322 TLGRCLAHRHRHGIYLVREGRNLPHGIVKPGETVLWDGRWHISNIGRAESRVQPGETKTD 381 Query: 361 -------KADVPSGIPPI----IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFS 409 + +P+ P+ +A+++L + P++AP+ F+ FD P+A A + Sbjct: 382 QTSPTLATSPLPASSLPVSLAALARQSLPGIGPNLHATPVIAPYQGFLPGFDWPLAVALA 441 Query: 410 ISF 412 F Sbjct: 442 GLF 444 >gi|116253706|ref|YP_769544.1| tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae 3841] gi|115258354|emb|CAK09456.1| putative tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 485 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 166/477 (34%), Positives = 237/477 (49%), Gaps = 64/477 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA IL A+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQLTILQFLTSLQSPARILAAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H+ + W+ KP+TG+MAAAREARY L+ A++ A LI+ Sbjct: 67 AGSADEARDVAALCASLGIPHTTMIWEGDKPKTGIMAAAREARYGLLETAAESFEADLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HTFDDQ ET+ MR R +G+ D +L++ WI RP L R DIR+FL + Sbjct: 127 TGHTFDDQRETLQMRGMRTEQIS----TGIADAVLFNRRFWILRPLLFSSRADIRAFLKE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D ++ERVR+RR + D + + + R+ +++ A + ++ Sbjct: 183 RGVPWIDDPSNEDIKYERVRMRRQLSDD--AGMEKDIGAAWEERLALSSRGAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + D L D +L Y+L AA+CGGQ +PG MERV+ F G ++ Sbjct: 241 LHGGLLGQVIPDGLRQDRAVLDYVLARLAAVCGGQPFVPGRAQMERVLTFATGTGLGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-LSDSLI---------- 352 GRVV D R + L++ R R + L+L P E VWDGR+ +N LS S++ Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLVLQPGEAGVWDGRFYARNGLSTSIVVEAATLYAPS 360 Query: 353 -------QIGPQSYRKADVPSGIPPIIAQ--------------------------RALSS 379 +S D I I AQ RA++S Sbjct: 361 FLCLSQESSASKSLGAKDTSRFIGSITAQTRGGWIPVTSTGMRERMHHLPKAAWKRAVAS 420 Query: 380 MPS---------KEGGK-----PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 P+ +E + P APF RF+T+FD A S F RLP Sbjct: 421 APALTSEEAPLFEESARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYARLPL 477 >gi|218674235|ref|ZP_03523904.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli GR56] Length = 486 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 169/473 (35%), Positives = 245/473 (51%), Gaps = 75/473 (15%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQAAILQFLESLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ + A LI+ Sbjct: 67 AGSADEARQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYDLLAESAERLGAKLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L+D WI RP L R +IR+FL + Sbjct: 127 TGHTLDDQRETLLMRGMRTEQRS----SGIADAVLFDRRFWILRPLLFSSRANIRAFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 R+++W +DPSN D ++ERVRVRR + ++D+HA + + R+ +++A A + Sbjct: 183 RDVAWIDDPSNEDVKYERVRVRRQLSADRATEMDIHAAW-------EARLALSSAAAEWL 235 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 ++ +H + +S D L D +L Y L A+ GGQ +PG MER++ F+ G+ Sbjct: 236 DRHFRLHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMERLLSFVTGGE 295 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS---------- 348 G +++GRVV D R + L+++R R + L+L P VWDGR++ N S Sbjct: 296 PGRMTVGRVVFDLRRDGLYLSRESRGILPLVLRPGVAGVWDGRFRVCNGSAVNARMEALA 355 Query: 349 --DSLIQI---GPQSYR------------------------------KADVPSGIPPIIA 373 SLI + G Q R K G+P Sbjct: 356 GLSSLIPVLVTGIQPPRVGAVNDSTKQDESSAPNDLGAEDSCDEHRNKGGEGRGLPKAAW 415 Query: 374 QRALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISF 412 +RA++S P+ G PL APF RF+T+FD A S F Sbjct: 416 KRAVASAPAFSVDGHPLSPESVGSIRLAPYFAPFDRFLTRFDFIFADRLSAVF 468 >gi|86359050|ref|YP_470942.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CFN 42] gi|86283152|gb|ABC92215.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CFN 42] Length = 486 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 239/478 (50%), Gaps = 65/478 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP E++ F+ SL PA ILVA+SGGSDS GLL+ L + ++ A +VDH LR Sbjct: 7 SPREAIVQFLTSLQSPACILVAISGGSDSTGLLLLLAEAMKAAPDLEMSLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H + W+ KP+TG+MAAAREARY+L+++ A+ + A LI+ Sbjct: 67 AGSADEAREVAALCASLGIPHMIARWQGEKPKTGIMAAAREARYSLLADAAEALGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L+D LWI RP L R DIR+FL Sbjct: 127 TGHTLDDQRETLRMRGMRTEQLS----SGIADAVLFDRRLWILRPLLFATRADIRAFLRA 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D R+ERVR RR + A+ ++ + R+ +++ + ++ Sbjct: 183 RGVRWIDDPSNEDIRYERVRTRRQLSAGP--AMPTDIRAVWEERLTLSSRAGEWLDRHFQ 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + + L D +L Y L A+ GGQ +PG M+R++ F G ++ Sbjct: 241 LHGGVLGQVMPEGLRQDRAVLDYTLGRLTAVFGGQPFVPGRVQMDRILAFASGSGLGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 GRVV D R + L++ R R + L+L P E VWDGR++ +N + I + Q+ R + Sbjct: 301 AGRVVFDLRRDGLYLARENRGIMPLVLRPGEAGVWDGRFRVENRLGTTISVEAQTTRSSL 360 Query: 364 VP---SGI-PPIIA-----------------------------------------QRALS 378 +P +GI PP + +RA++ Sbjct: 361 IPVPVTGIQPPRVGAVNDSSMRNESCAPKNFGALNSCDKHRNEGGWGKHLPKAAWKRAIA 420 Query: 379 SMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 S P S +G P APF RF+T+FD A S F LP Sbjct: 421 SAPALSSDGAYLSSKSALTAELTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPL 478 >gi|209550773|ref|YP_002282690.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536529|gb|ACI56464.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 492 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 154/390 (39%), Positives = 224/390 (57%), Gaps = 13/390 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP E++ F+ SL P ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPREAILQFLSSLQSPVRILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L IAH++++W+ KP TG+MAAAREARY+L++E A+ + A LI+ Sbjct: 67 AGSADEAREVAALCASLGIAHAIMTWQGDKPITGIMAAAREARYSLLAEAAEALGADLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAHT DDQ ET+ MR R +G+ D +L+D + WI RP L R DIR+FL + Sbjct: 127 TAHTLDDQRETLAMRGMRTEEVS----TGIADAVLFDRHFWILRPLLFSSRADIRAFLSE 182 Query: 184 RNISWCEDPSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W +DPSN D ++ERVR+R + D A + D R+ V+ A + + Sbjct: 183 QGAGWIDDPSNEDVKYERVRIRQQLSADGGAEA---NISAVWDERLAVSAKGAEWLDHHF 239 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 +H + + + L D +L Y+L A+ GGQ PG MER++ F G+ + Sbjct: 240 KLHGGLLGQVMPEGLRQDRAVLDYVLGRLTAVFGGQPFAPGRAQMERLVAFAAGGEPARM 299 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 ++GRVV D R + L++TR R + L+L P E VWDGR++ N S ++I QS R + Sbjct: 300 TVGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRFEAVNRSAIDVRIEAQSGRSS 359 Query: 363 DVP---SGI-PPIIAQRALSSMPSKEGGKP 388 +P +GI PP + S++P KE P Sbjct: 360 LIPVLVTGIQPPRVGAVNDSTIP-KESPAP 388 >gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021] gi|307300474|ref|ZP_07580254.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C] gi|307318339|ref|ZP_07597774.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83] gi|61216708|sp|Q92JY3|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021] gi|306896021|gb|EFN26772.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83] gi|306904640|gb|EFN35224.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C] Length = 453 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 161/444 (36%), Positives = 231/444 (52%), Gaps = 34/444 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ R F+RS + P ILVAVSGGSDSMGLL+ALHS ++ +A +VDH LR Sbjct: 6 LDTARNFLRSFITPRRILVAVSGGSDSMGLLVALHSAIAADERRGFSLAACTVDHALRPQ 65 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + E V+ C+ L IAH + W+ +KP TG+ AAAR RY L++E A + A I Sbjct: 66 SACEAEDVAAFCAALGIAHRICRWEGAKPSTGIQAAARNKRYELLAEAADALGADCIAIG 125 Query: 126 HTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILYDLNLWISRPFLRCRRE 175 HT DDQ ETV MR R KG G +GM ++LY +W+ RPFL R Sbjct: 126 HTRDDQQETVAMRIARG---KGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLARA 182 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +IRSFL R +SW +DPSN + FERVRVR + L + R + A Sbjct: 183 EIRSFLQARGVSWIDDPSNANPAFERVRVRARIATSGGMPTPLGNGR---QRAASSARAA 239 Query: 236 MLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 LI K + VH + +S + ID L A++ GG+ +P + +++R+ FL Sbjct: 240 ALIEKRIRVHEALVAEVSARHAGEIDDPDWRRALLTVASVLGGREHMPAFATVQRLSQFL 299 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 +SG+ G ++ GRVV DRRA+ L++ R RNLP L + P WDGR+ ++ ++ Sbjct: 300 RSGEPGRMTAGRVVFDRRASGLYLYREARNLPVLAVGPGRQGAWDGRFTVKSRGPAVTVA 359 Query: 355 GPQSYR---KADVPSGIPPIIAQRALSSMP---SKEGGKPLL--AP---------FSRFM 397 S R K + +G+P IA+R + P S +G AP + F+ Sbjct: 360 ADASGRLWTKRLIDAGLPAGIAKRGSTVAPEIASTDGAGLAFGEAPAQVEYHIGLYDTFL 419 Query: 398 TKFDLPVAYAFSISFGKVFIPRLP 421 FD +A A ++SFG+ P P Sbjct: 420 PGFDRIMADAVAVSFGRDRYPAPP 443 >gi|150397822|ref|YP_001328289.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419] gi|150029337|gb|ABR61454.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419] Length = 453 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 161/441 (36%), Positives = 238/441 (53%), Gaps = 30/441 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++ +F+RS P ILVAVSGGSDSMG+L+ALH+ ++ +A +VDH LR + Sbjct: 7 DTASYFLRSFTRPCRILVAVSGGSDSMGVLMALHAAIATGEHPGFSLAACTVDHALRPQS 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +E V+ C L IAH W+ +KP TG+ AAAR+ RY L++ A+ + A I+T H Sbjct: 67 AEEAASVAAFCRTLDIAHRTRRWEGAKPATGIQAAARKIRYELLAVAAEALGADCIVTGH 126 Query: 127 TFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T +DQ ET+ MR R D +G G +GM T+LY +W+ RPFLR R +IRS Sbjct: 127 TREDQHETIEMRRARSNGPGIDDGEGEGHGGAGMAATMLYGRRVWVLRPFLRLGRAEIRS 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 FL R ++W +DPSN + FERVRVR R D+ ++ R + A A LI Sbjct: 187 FLDARAVAWIDDPSNANHAFERVRVRARIAASDDMQMPLWGGRQ----RAASSAAAAGLI 242 Query: 239 PKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + VH + I+ ++ D L + A+ GG+ LP +++R+ FL++G Sbjct: 243 EDRIRVHEALVAEITAENAGATDDPDWRRALLIVASALGGRDHLPARATVQRLSEFLRAG 302 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 K G ++ GRVV DRRA L++ R RNLP L L P +WDGR++ + +L+ Sbjct: 303 KPGRMTAGRVVFDRRAGGLYLYREARNLPVLALGPGGQGLWDGRFKITSGGPALVVTADA 362 Query: 358 SYRKAD---VPSGIPPIIAQRALSSMPS-----KEG---GKPL------LAPFSRFMTKF 400 S R++ + +G+P I +RA + P G G+ L +APF F+ F Sbjct: 363 SGRRSAQRLIDAGLPMGIVKRASTVAPGIAPADAAGIAYGEALAEIEYNIAPFDTFLPGF 422 Query: 401 DLPVAYAFSISFGKVFIPRLP 421 D +A A ++SFG+ P P Sbjct: 423 DRIMADAVAVSFGRERYPAPP 443 >gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 457 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 148/437 (33%), Positives = 218/437 (49%), Gaps = 35/437 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + + AVSGGSDS LL+ L DR K A+++DH LR + E + V+ +C Sbjct: 18 FTSGAVAAVSGGSDSTALLLLL-KHHLDRRAPATKLLAVTIDHGLRSGSAAEAQTVAKLC 76 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +RL I+H +++W KP TGL AAAREARY L++E A+ +I+T HT DDQ ETV M Sbjct: 77 ARLGISHRILTWSGPKPSTGLPAAAREARYRLLAEAAQAEGIGMILTGHTADDQAETVLM 136 Query: 138 RSQRDYAE-----KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R RD + G GL+GM LYD +WI RP L RR +R L ++N+ W +DP Sbjct: 137 RHARDAGQGHAGMAGRGLAGMAPATLYDWRIWIVRPLLGVRRAVLRDVLRRQNVGWADDP 196 Query: 193 SNTDDRFERVRVRRFVRDIDL-HALYLKMKKFQDL--RVKVNNAVAMLIPKYLTVHMRSI 249 +N D FER RVR + + H + M Q R ++ + LI + + + Sbjct: 197 TNVDAAFERPRVRAALAGESVEHVKGMLMLAGQAALERRQLGASATDLIDGFASQPAIGL 256 Query: 250 IAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 I + +L+ D Y LR+ A GG LP E + L++G C ++ R V Sbjct: 257 ICLDPCLLSSGDEQAAIYALRILLATTGGIAFLPDEARSEALFGRLRAGFL-CATLSRTV 315 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGP----QSYRKAD 363 +D R + +++ R R LP +T+WDGR N S S + I P + R A Sbjct: 316 VDSRRSGIFLRREARGLPAAAAA-TGSTLWDGRRHITLNDSSSALLIAPLGAAAAKRLAT 374 Query: 364 VPSGIPPIIAQRALSSMPS--KEG----------------GKPLLAPFSRFMTKFDLPVA 405 P + + AL++ P+ + G +P++APF RF+ FDL +A Sbjct: 375 GEGKTPSSLMRAALAAEPAVWQAGECLGLPGYGLKSATVEARPVVAPFGRFLPSFDLALA 434 Query: 406 YAFSISFGKVFIPRLPF 422 A + G +P LPF Sbjct: 435 RAVAGLIGAAPVPPLPF 451 >gi|260467069|ref|ZP_05813249.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075] gi|259029178|gb|EEW30474.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075] Length = 455 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 154/452 (34%), Positives = 227/452 (50%), Gaps = 40/452 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 P S R F + + + AVSGGSDS LL+ L DRS K A+++DH LR Sbjct: 5 GPDLSTRLFSH-IDFTNGAVAAVSGGSDSTALLLLL-KHHLDRSAPSAKLLAVTIDHGLR 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + E + V+ +C+ IAH + W KP TGL AAAREARY L++ A+ LI+ Sbjct: 63 QDSAAEAQAVAKLCAERGIAHRTMIWSGRKPSTGLPAAAREARYRLLASAARAEGIGLIV 122 Query: 124 TAHTFDDQLETVYMRSQRDYA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 T HT DDQ ETV MR RD + +G GL+GM LYD WI RP L RR +R F Sbjct: 123 TGHTADDQAETVLMRHARDGSLGHVQGRGLAGMAPATLYDWREWIVRPLLGTRRAALRDF 182 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRF-----VRDIDLHALYLKMKKFQDLRVKVNNAVA 235 L +++ W EDP+N+D+ FER RVR VR +D AL L + + R ++ A Sbjct: 183 LQSKHVGWAEDPTNSDESFERPRVRAALAGDNVRRMD-EALVLASQAAIE-RGQLGLDAA 240 Query: 236 MLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 LI ++ + ++ + + + D Y LR+ A GG LP E + L Sbjct: 241 DLIRRFASQPATGLVRLDPQLRSTGDERAAIYALRILLATVGGLAFLPDQARGEVLFGRL 300 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---- 350 K+G C ++ R V+D R +++ R R LP + T+WDGR L+DS Sbjct: 301 KAGFL-CATLSRTVVDFRRAGIFLRREARGLPPAAAA-IDNTIWDGRRHI-TLNDSSAGL 357 Query: 351 -LIQIGPQSYRKADVPSG-IPPIIAQRALSSMPSK----------EG--------GKPLL 390 + +G + ++ + +G P + + AL++ P+ +G +P++ Sbjct: 358 LIAPLGAAAAKRLPIDAGETPASLMRAALAAEPTSRQAFENPDVPQGEPASPGFDARPVV 417 Query: 391 APFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 APF+RF+ FDL A A + G +P LPF Sbjct: 418 APFARFLPSFDLAPARAIAGLIGAPSLPALPF 449 >gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099] gi|61216717|sp|Q98F87|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099] Length = 454 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 144/442 (32%), Positives = 210/442 (47%), Gaps = 58/442 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + AVSGGSDS LL+ L DR+ K A+++DH LR+ + E + V+ +C+ I Sbjct: 23 VAAVSGGSDSTALLLLLKHHF-DRTGSSAKLLAVTIDHGLRQGSAAEAQAVAKLCAERGI 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 AH ++W KP TGL AAAR+ARY L++E A+ LI+T HT DDQ ETV MR RD Sbjct: 82 AHRTLTWTGRKPSTGLPAAARDARYHLLAEAARAEGIGLIVTGHTADDQAETVLMRHARD 141 Query: 143 --YAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 A+ G GL+GM LYD WI RP L RR +R FL + ++ W EDP+N D+ F Sbjct: 142 RELADLAGRGLAGMAPATLYDWREWIVRPLLGTRRSALRDFLRREHVGWAEDPTNIDEAF 201 Query: 200 ERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ER RVR + + ++ + R ++ + A LI + + +I + + Sbjct: 202 ERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASAANLIRRIASQPSTGLIRLDPAL 261 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L D Y LR+ A GG LP + + LK+G C ++ R V+D R L Sbjct: 262 LIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRLKAGFL-CATLSRTVVDFRHAGL 320 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQ--FQNLSDSLIQIGP------------------ 356 ++ R R LP + T+WDGR ++S +L+ I P Sbjct: 321 FLRREARGLPPAATA-VDNTIWDGRRHITLNDMSGALL-IAPLGAAAARRLAIDDGETPA 378 Query: 357 --------------QSYRKADVPSGIP--PIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400 Q++ +P G P P+ A R P+++PF+RF+ F Sbjct: 379 SLIRAALAAEPTLLQAFENLGLPQGEPRLPVFAAR------------PVVSPFARFLPSF 426 Query: 401 DLPVAYAFSISFGKVFIPRLPF 422 DL A A + G +P P Sbjct: 427 DLAPARAVAELIGASPLPASPL 448 >gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43] gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43] Length = 444 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 58/428 (13%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGGSDS+GLL+ + RS + A++VDH LR + DE R V +C RL + Sbjct: 35 VAVSGGSDSLGLLLGMA-----RSVPPKQLVALTVDHGLRSGSADEARTVKRICRRLGVR 89 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H + WK KP +GL A AREARY L+S+ A + I+T HT DDQ ET+ MR R Sbjct: 90 HETLLWKGEKPVSGLQAKAREARYHLLSDAASRLGLAAILTGHTSDDQAETLTMRRTRGL 149 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + GL G+ L+D W+ RP L R IR +L + W EDPSN D RFERVR Sbjct: 150 RDDAPGLIGIPQASLFDGRSWVLRPLLGVDRASIRRYLAMAGVGWIEDPSNLDVRFERVR 209 Query: 204 VRRFVRDIDLHALYLK----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD---I 256 VR + ++ A+ K + RV++ A + + V ++ D Sbjct: 210 VR---KGLEAQAMVSKSSDEASRAIASRVRIALEAAAFVDQACGVQRDGTWRVALDGRGA 266 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN 314 ++ L L+RV CGG + P R + + SG++ +++GR +I R Sbjct: 267 GEVEIAALEALIRV----CGGA-ARPLDRRGKLALHGFVSGRQAGSALAVGRTLIKRDVA 321 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ 374 + R R L L++ P ++ WD R++ NL R +D+ ++A Sbjct: 322 GFVLMRERRGLEELVIAPGQSGDWDRRFRITNLD-----------RHSDL-----RVVAD 365 Query: 375 RALSSMP-------------SKEGG-------KPLLAPFSRFMTKFDLPVAYAFSISFGK 414 ++MP S GG K L+ FSR + ++LP+A A + G Sbjct: 366 HTATAMPLFSRDFKAGSRSWSPAGGICGGFLVKRLVGGFSRVLPVYELPLAQALARLTGG 425 Query: 415 VFIPRLPF 422 P P+ Sbjct: 426 AAFPACPW 433 >gi|110635497|ref|YP_675705.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium sp. BNC1] gi|110286481|gb|ABG64540.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1] Length = 446 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 135/425 (31%), Positives = 206/425 (48%), Gaps = 35/425 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ AVSGG DS+ LL L L + G A++VDH LR + E R V ++ + Sbjct: 25 VVAAVSGGGDSLALLFLLQDFLERQPSGP-SLLAVTVDHGLRPDSATEARAVGELAAARG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IAH + W+ +KP+ G+ AAAREAR AL++ A+ L+ TAHT DDQ ET+ MR R Sbjct: 84 IAHRTLRWEEAKPKAGISAAAREARLALLARAAREAGTDLVFTAHTADDQAETLAMRLSR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ L++ ++W +RP L RR +R++L +R ISW EDPSN D RFER Sbjct: 144 GGGRG---AAGIAPATLFEGDVWFTRPLLHTRRAALRTYLGERGISWFEDPSNRDPRFER 200 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 RVR + + AL + + Q LR + A A LI T ++ + + + Sbjct: 201 ARVRACLDEDRTQALLAEAENAQRLRQEQGRAAADLIGSAATRVAPGLLRFALAAASEEK 260 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 L Y LR+ A+ GG L ++ +R VS+ R V+ R+ ++L++ R Sbjct: 261 GGL-YALRIVLAVAGGSPHLADEARSAALLRRALEDERCRVSLSRAVVTRKRDWLYLHRE 319 Query: 322 VRNLPTLILYPEETTVWDGRYQF---QNLSDSLI------QIGPQSYRKADVPSGIPPII 372 RNLP L E+ +WDGRY+ L + + + +A+ P+G + Sbjct: 320 RRNLPETSLSGEQ--IWDGRYRLVPAGQLKGACVAAFGPANAAARDVAEAEAPAG----L 373 Query: 373 AQRALSSMPSKEGG---------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFI 417 + AL++ P+ G + L P++R + FDL A A Sbjct: 374 LRSALAAEPAIWRGDLCLGLASDMEGLVLQRLAQPWARLLPSFDLAPASALLELLNGSVP 433 Query: 418 PRLPF 422 P LPF Sbjct: 434 PILPF 438 >gi|254714554|ref|ZP_05176365.1| hypothetical protein BcetM6_14687 [Brucella ceti M644/93/1] gi|254717451|ref|ZP_05179262.1| hypothetical protein BcetM_13811 [Brucella ceti M13/05/1] Length = 448 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 134/407 (32%), Positives = 197/407 (48%), Gaps = 19/407 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERIL 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK-----ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393 +I P ++ + I + L S EGGKP PF Sbjct: 356 FEIAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPF 402 >gi|261219282|ref|ZP_05933563.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1] gi|261322343|ref|ZP_05961540.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1] gi|260924371|gb|EEX90939.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1] gi|261295033|gb|EEX98529.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1] Length = 453 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/405 (32%), Positives = 196/405 (48%), Gaps = 19/405 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERILSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK-----ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393 I P ++ + I + L S EGGKP PF Sbjct: 363 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPF 407 >gi|254708440|ref|ZP_05170268.1| hypothetical protein BpinM_16175 [Brucella pinnipedialis M163/99/10] gi|254708707|ref|ZP_05170518.1| hypothetical protein BpinB_00311 [Brucella pinnipedialis B2/94] gi|256030233|ref|ZP_05443847.1| hypothetical protein BpinM2_06231 [Brucella pinnipedialis M292/94/1] gi|256160408|ref|ZP_05458097.1| hypothetical protein BcetM4_15479 [Brucella ceti M490/95/1] gi|256255614|ref|ZP_05461150.1| hypothetical protein BcetB_15298 [Brucella ceti B1/94] gi|260167908|ref|ZP_05754719.1| hypothetical protein BruF5_05982 [Brucella sp. F5/99] gi|261757346|ref|ZP_06001055.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella sp. F5/99] gi|261737330|gb|EEY25326.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella sp. F5/99] Length = 448 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERIL 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|256370101|ref|YP_003107612.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915] gi|256000264|gb|ACU48663.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915] Length = 448 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGTPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|225853148|ref|YP_002733381.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457] gi|256045303|ref|ZP_05448197.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256114261|ref|ZP_05455006.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 3 str. Ether] gi|256263360|ref|ZP_05465892.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9] gi|260565805|ref|ZP_05836288.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M] gi|61216690|sp|Q8YIV0|TILS_BRUME RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|254789035|sp|C0REV5|TILS_BRUMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225641513|gb|ACO01427.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457] gi|260151178|gb|EEW86273.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M] gi|263093359|gb|EEZ17428.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9] gi|326409706|gb|ADZ66771.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M28] gi|326539413|gb|ADZ87628.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M5-90] Length = 448 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|256061730|ref|ZP_05451867.1| hypothetical protein Bneo5_15421 [Brucella neotomae 5K33] Length = 448 Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLL--ASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|62290564|ref|YP_222357.1| hypothetical protein BruAb1_1677 [Brucella abortus bv. 1 str. 9-941] gi|82700480|ref|YP_415054.1| hypothetical protein BAB1_1704 [Brucella melitensis biovar Abortus 2308] gi|148560003|ref|YP_001259546.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840] gi|189024784|ref|YP_001935552.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19] gi|254689861|ref|ZP_05153115.1| hypothetical protein Babob68_06777 [Brucella abortus bv. 6 str. 870] gi|254694354|ref|ZP_05156182.1| hypothetical protein Babob3T_06787 [Brucella abortus bv. 3 str. Tulya] gi|254698012|ref|ZP_05159840.1| hypothetical protein Babob28_09973 [Brucella abortus bv. 2 str. 86/8/59] gi|254700354|ref|ZP_05162182.1| hypothetical protein Bsuib55_05789 [Brucella suis bv. 5 str. 513] gi|254730896|ref|ZP_05189474.1| hypothetical protein Babob42_06812 [Brucella abortus bv. 4 str. 292] gi|256258115|ref|ZP_05463651.1| hypothetical protein Babob9C_12379 [Brucella abortus bv. 9 str. C68] gi|260547191|ref|ZP_05822929.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038] gi|261214662|ref|ZP_05928943.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 3 str. Tulya] gi|297248964|ref|ZP_06932672.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196] gi|75496348|sp|Q57BI8|TILS_BRUAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123547188|sp|Q2YQH6|TILS_BRUA2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988057|sp|A5VS49|TILS_BRUO2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695537|sp|B2S7D1|TILS_BRUA1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62196696|gb|AAX74996.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616581|emb|CAJ11660.1| Protein of unknown function UPF0021 [Brucella melitensis biovar Abortus 2308] gi|148371260|gb|ABQ61239.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840] gi|189020356|gb|ACD73078.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19] gi|260095556|gb|EEW79434.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038] gi|260916269|gb|EEX83130.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 3 str. Tulya] gi|297174097|gb|EFH33454.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196] Length = 448 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|23502550|ref|NP_698677.1| hypothetical protein BR1692 [Brucella suis 1330] gi|61216663|sp|Q8FZ11|TILS_BRUSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23348550|gb|AAN30592.1| conserved hypothetical protein [Brucella suis 1330] Length = 448 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVKLARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|161619622|ref|YP_001593509.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365] gi|163845272|ref|YP_001622927.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445] gi|254703471|ref|ZP_05165299.1| tRNA(Ile)-lysidine synthetase [Brucella suis bv. 3 str. 686] gi|260568779|ref|ZP_05839247.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40] gi|189035965|sp|A9M7J1|TILS_BRUC2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189035966|sp|A9WWG9|TILS_BRUSI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161336433|gb|ABX62738.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365] gi|163675995|gb|ABY40105.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445] gi|260154163|gb|EEW89245.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40] Length = 448 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLL--ASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|254719695|ref|ZP_05181506.1| hypothetical protein Bru83_09158 [Brucella sp. 83/13] gi|306837846|ref|ZP_07470708.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653] gi|306407085|gb|EFM63302.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653] Length = 448 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ + D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLDADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|225628261|ref|ZP_03786295.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo] gi|261222817|ref|ZP_05937098.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94] gi|261315940|ref|ZP_05955137.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10] gi|261316198|ref|ZP_05955395.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94] gi|265987261|ref|ZP_06099818.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1] gi|265998776|ref|ZP_06111333.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella ceti M490/95/1] gi|225616107|gb|EEH13155.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo] gi|260921401|gb|EEX88054.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94] gi|261295421|gb|EEX98917.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94] gi|261304966|gb|EEY08463.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10] gi|262553465|gb|EEZ09234.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella ceti M490/95/1] gi|264659458|gb|EEZ29719.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1] Length = 453 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERILSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|294850945|ref|ZP_06791621.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026] gi|294821588|gb|EFG38584.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026] Length = 448 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNVDCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|261754101|ref|ZP_05997810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 3 str. 686] gi|261743854|gb|EEY31780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 3 str. 686] Length = 453 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|265991728|ref|ZP_06104285.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1] gi|265995565|ref|ZP_06108122.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether] gi|262766849|gb|EEZ12467.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether] gi|263002684|gb|EEZ15087.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1] Length = 453 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|261325734|ref|ZP_05964931.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33] gi|261301714|gb|EEY05211.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33] Length = 453 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|237816070|ref|ZP_04595066.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A] gi|260755392|ref|ZP_05867740.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 6 str. 870] gi|260758613|ref|ZP_05870961.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 4 str. 292] gi|260762446|ref|ZP_05874783.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 2 str. 86/8/59] gi|260884408|ref|ZP_05896022.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68] gi|261750848|ref|ZP_05994557.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 5 str. 513] gi|237788733|gb|EEP62945.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A] gi|260668931|gb|EEX55871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 4 str. 292] gi|260672872|gb|EEX59693.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 2 str. 86/8/59] gi|260675500|gb|EEX62321.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 6 str. 870] gi|260873936|gb|EEX81005.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68] gi|261740601|gb|EEY28527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 5 str. 513] Length = 453 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|265984710|ref|ZP_06097445.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13] gi|264663302|gb|EEZ33563.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13] Length = 453 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 123/368 (33%), Positives = 183/368 (49%), Gaps = 14/368 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293 L V ++ + D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLDADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362 Query: 354 IGPQSYRK 361 I P ++ Sbjct: 363 IAPPGRQE 370 >gi|306841411|ref|ZP_07474113.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2] gi|306288517|gb|EFM59869.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2] Length = 448 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 184/370 (49%), Gaps = 14/370 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLE-SPPALIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H ++SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHRILSWDDPKPVHGLAAAARTARYRLLVQAARDAGAD 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALREE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291 P L V ++ ++ D L+ + LF L A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + +R V + + R RNLP L L P + VWDGR+ F N Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRK 361 +I P ++ Sbjct: 356 FEIAPPGRQE 365 >gi|17986625|ref|NP_539259.1| cell cycle protein MESJ [Brucella melitensis bv. 1 str. 16M] gi|17982239|gb|AAL51523.1| cell cycle protein mesj [Brucella melitensis bv. 1 str. 16M] Length = 429 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/349 (33%), Positives = 177/349 (50%), Gaps = 12/349 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ AVSGGSDS+GLL L LS + A++VDH LR + E V +C + Sbjct: 1 MIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKLRAESALEAENVGLLCQKHG 59 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H V+SW + KP GL AAAR ARY L+ + A+ A I+T HT +DQ+ET MR R Sbjct: 60 IMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFIVTGHTENDQIETFLMRKAR 119 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + GL+ M L + ++ ++RP L R+ +R L +R I+W +DPSN + +ER Sbjct: 120 SGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELTRRGIAWVDDPSNANIDYER 179 Query: 202 VRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAISQDI-- 256 RVR V + D + ++ + R + N A+ A+ P L V ++ ++ D Sbjct: 180 PRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADPATLGVDAAGMMFLNADCYA 239 Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L+ + LF L A+I GG+ LPG R +ER++ + +R V + + Sbjct: 240 ALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSGQDAPRRLTVFGALIERGEK 297 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 R RNLP L L P + VWDGR+ F N +I P ++ Sbjct: 298 GAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIAPPGRQE 346 >gi|49474667|ref|YP_032709.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse] gi|61216506|sp|Q6FYQ5|TILS_BARQU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49240171|emb|CAF26635.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse] Length = 476 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 37/370 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS+ LL + L S + ++VDH LR + E V+++C Sbjct: 21 VILAVSGGSDSLALLFLVKDHLKTFSI-PTEIIVVTVDHQLRRESACEAESVAEICRAHH 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H +V W+ KP+T ++++AR RY L+ + A+ ATLIMT HT +DQ+ET MR QR Sbjct: 80 IQHVIVRWEGKKPKTHIISSARTVRYNLLFKEAQKQGATLIMTGHTLNDQVETYQMRCQR 139 Query: 142 ---------------------------DYAEKGM------GLSGMCDTILYDLNLWISRP 168 + AEK GLS + L + + + RP Sbjct: 140 LQKSADVLQREAFEDMRDGVCSTETRANIAEKSYGLMYERGLSCIPREALLNQTVRLIRP 199 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L +R+ +R++L + +W +DP+N + FERVRVR+ + + K+ + R Sbjct: 200 LLGVKRKTLRAYLRLKGKTWIDDPTNENPNFERVRVRQSLHPKKFAGIAQKVHEATLQRR 259 Query: 229 KVNNAVAMLIPKY-LTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 K VA LI ++V H R IA L S F + + + GG LP + Sbjct: 260 KQAQNVANLILALDVSVEHGRCFIAKPVSFLQQHSGFPFVVGLFAVLMGGGFYLLPTKKL 319 Query: 287 MERV-MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 V L L S ++ ++ VI+ + L R RN+ + P +T +WDGRYQ Sbjct: 320 NTLVSKLCLHSLEKRRFTLAGSVIESNRSGLAFWRESRNIKEGAVEPGKTFLWDGRYQIT 379 Query: 346 NLSDSLIQIG 355 N D I++G Sbjct: 380 NRGDETIKVG 389 >gi|239832779|ref|ZP_04681108.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301] gi|239825046|gb|EEQ96614.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301] Length = 463 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 35/348 (10%) Query: 22 ILVAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++ AVSGGSDS+GLL L ++L D + A +VDH LR ++DE V +CS Sbjct: 23 VIAAVSGGSDSLGLLFLLRDYMAMLKD----PPRLIAATVDHQLRAESRDEAENVGRLCS 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I H +++W +KP +GL AAAR ARY L+S+ A+ A I+T HT DDQ+ET MR Sbjct: 79 HYGIEHRILTWDEAKPTSGLAAAARTARYRLLSQAAQEAGAAFIVTGHTQDDQIETFLMR 138 Query: 139 SQRDYAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +R + GL+ M L ++ + RP L R+ +R L R I W +DPS Sbjct: 139 RERSAHAEARGLAAMSSRSLLGGFGRVGSVELDRPLLSISRQVLREELRGRGIGWIDDPS 198 Query: 194 NTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSI 249 N + +ER RVR V D A+ ++ + R + +NAV A+ P L + Sbjct: 199 NANTDYERPRVRLGVAAKADRQAVLDQIAEAGAARER-DNAVLIAALADPASLRIDANGA 257 Query: 250 IAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG--YRS-MERVMLFLKSGKRGCVS 303 + + + L ++ LF L AAI GG+ LPG RS +ERV+ R ++ Sbjct: 258 LLVDPQLYAALPDNARRLFAGL--LAAIAGGRRFLPGDSERSRIERVLSGEDDNHR--LT 313 Query: 304 IGRVVIDRRAN-----FLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 + +I+R A+ FL R RNLP L L P + VWDGR++F N Sbjct: 314 VFGALIERGADGSPHRFL---REKRNLPKLHLEPGKPIVWDGRFRFSN 358 >gi|240851214|ref|YP_002972617.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup] gi|240268337|gb|ACS51925.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup] Length = 495 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 181/389 (46%), Gaps = 56/389 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS+ L+ + L S + ++VDH LR+ + EV V+ +C Sbjct: 21 LILAVSGGSDSLALMFLVKEHLETLSVPP-EMIVVTVDHQLRKESTREVETVAKICRVHH 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H V W+ KP+T + ++AR ARY L+ + A+ A++IMT HT +DQ+ET MR QR Sbjct: 80 IKHIAVRWEGEKPKTHIASSARVARYDLLVKEAQKQGASVIMTGHTLNDQVETYQMRYQR 139 Query: 142 DYAEKGM---------------GLSGMC------------------------DTILYDLN 162 +G G +G+ D+ LY+ Sbjct: 140 LQKNRGALHGEVGAMRDEVYSSGFAGVLRGEADGIRDENHAREIRKKITKKNDSPLYERG 199 Query: 163 L-------------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 L + RP L +R+ +R++L + +W +DP+N D FERVRVR+ + Sbjct: 200 LSCIPREALLHRKVRLIRPLLGVKRQTLRNYLRLQGQTWIDDPTNEDRNFERVRVRQSLH 259 Query: 210 DIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYL 267 L + K+ + R + N +++ +TV H R IA L S+ F + Sbjct: 260 PEKLAYIAQKINEAALQRRQQAKNIADLILALDITVQHGRCFIAKPALFLQKHSSFPFVV 319 Query: 268 LRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 + + GG LP + SM L L S ++ + VI+ + + + R RN+ Sbjct: 320 GLFAVLMGGGFYLLPNQKLSMLVQKLCLDSVEKKRFTYAGSVIEYNKHGISLWREGRNMK 379 Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355 I+ P++T +WDGRYQ N I+IG Sbjct: 380 EAIVEPDKTFIWDGRYQITNHGSKAIKIG 408 >gi|319899362|ref|YP_004159459.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella clarridgeiae 73] gi|319403330|emb|CBI76889.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella clarridgeiae 73] Length = 481 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/380 (28%), Positives = 174/380 (45%), Gaps = 47/380 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS+ LL + L + +++DH LRE + E V+ +C + Sbjct: 21 LILAVSGGSDSLALLFLVQEHLKILPIAP-EVIVVTIDHQLREESAHEAESVAKICHAYQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H +V W+ KP+T + AR ARY L+ + A+ ATLIMT HT +DQ ET MR QR Sbjct: 80 IKHIIVRWEGKKPETKISEKARIARYDLLFKEAQKHGATLIMTGHTLNDQAETYQMRVQR 139 Query: 142 DY---------------------------------------AEKGM--GLSGMCDTILYD 160 AE+G GLS + L Sbjct: 140 SQKKTEGAQSETLEKSLKERSSENGITEILKENDQEISIKKAEEGYERGLSCIPREALLH 199 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 + + RP L RR+ +R++L + +W +DP+N D RFERVRVR F+R +L + K+ Sbjct: 200 GQVRLIRPLLGVRRQTLRAYLSFQGSTWIDDPTNEDLRFERVRVRHFLRQKNLSEIAKKV 259 Query: 221 KKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 K R++ +++ + V H R I L+ F ++ + + GG Sbjct: 260 NKAALKRRMQAQKVADLILALDIAVEHGRCFIGKPPVFLHQHHAFPF-VVGLFVVLMGGS 318 Query: 279 ISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 L + + + L L+ ++ ++ VI+ + + R R++ I+ P ET Sbjct: 319 SYLLSSQKLVALNQKLCLQEPEKKRFTLAGAVIETSKKGIAMWRETRHIQEAIIAPGETF 378 Query: 337 VWDGRYQFQNLSDSLIQIGP 356 VWD RYQ N I++ P Sbjct: 379 VWDRRYQISNYDTKAIRVRP 398 >gi|49476135|ref|YP_034176.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1] gi|61216510|sp|Q6G5P5|TILS_BARHE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49238943|emb|CAF28239.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1] Length = 493 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/389 (29%), Positives = 180/389 (46%), Gaps = 58/389 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS+ LL + L S + ++VDH LR+ + E V+++C Sbjct: 21 LILAVSGGSDSLALLFLVKDHLKTLSVPP-EIIVVTVDHQLRQESAREASIVAEICRAHH 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H +V W+ KP+T + ++AR ARY L+ + A+ ATLIMT HT +DQ+ET MR QR Sbjct: 80 IQHRIVRWEGKKPKTHIASSARVARYDLLFQEAQKQGATLIMTGHTLNDQVETYQMRYQR 139 Query: 142 -----------DYAEKG-------------------MGLSGM-------CDTILYDLNLW 164 +AE G MG+ G D ++Y+ L Sbjct: 140 LQKSADVLQQEAFAEMGGGVHADVLQQEAFAERCERMGVGGHGGDIAEKSDGLIYERGLS 199 Query: 165 -------------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + RP L +RE +R++L + +W EDP+N D FERVRVR+ ++ Sbjct: 200 CIPREALLRGTVRLIRPLLGVKRETLRTYLRLKEKTWIEDPTNEDCNFERVRVRQSLQPK 259 Query: 212 DLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLR 269 + K+ + R + N +++ +TV + R IA L F + Sbjct: 260 KFTCIARKVHEAALQRRQQAKNIADLILALDITVEYGRCFIAKPALFLQKHPGFPFVVGL 319 Query: 270 VSAAICGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANF-LWITRAVRNLP 326 + + GG LP + ++ + + S KR G V+ R+ W R RN+ Sbjct: 320 FAVLMGGGFYLLPHKKLSTLVQKLSLHSSEKRRFTYAGSVIEYNRSGIAFW--REARNIK 377 Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355 I+ +T +WDGRYQ N S I++G Sbjct: 378 EAIVEKGQTFLWDGRYQITNHSHEPIKVG 406 >gi|153008553|ref|YP_001369768.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188] gi|166988061|sp|A6WY85|TILS_OCHA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|151560441|gb|ABS13939.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188] Length = 456 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 110/340 (32%), Positives = 172/340 (50%), Gaps = 19/340 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ AVSGGSDS+GLL + ++ + A++VDH LR +K E V +C + Sbjct: 23 VIAAVSGGSDSLGLLFLVRDYMAMLQ-NPPRLIAVTVDHQLRAESKAEAENVGLLCRQYG 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H ++ W +KP +GL AAAR ARY L+ + A+ + I+T HT DDQ+ET MR +R Sbjct: 82 IEHRILVWDEAKPTSGLAAAARTARYRLLVQAARDVGGAFIVTGHTQDDQIETFLMRKER 141 Query: 142 DYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + GL+ M D + + ++ + RP L R+ +R L R I+W +DPSN + Sbjct: 142 SAHAEARGLAAMSLRSLLDGLGLEGSVELDRPLLSVSRQTLRDELRGRGINWVDDPSNAN 201 Query: 197 DRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAIS 253 +ER R+R + + D + ++ + R + N A+ A+ P L + + Sbjct: 202 TEYERPRIRHGIAAEADRQTVLDQIAEAGAARERDNAALIAALGNPASLRADANGALLVD 261 Query: 254 QDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC--VSIGRVV 308 + L ++ LF L AAI GG+ LPG R+ L SG +++ + Sbjct: 262 PQLYAALPGNARRLFSGL--LAAIAGGRRFLPGDSERSRIERVL-SGDDDTHRLTVFGAL 318 Query: 309 IDR--RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 I+R + R RNLP L L P + VWDGR++F N Sbjct: 319 IERGDSGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFLN 358 >gi|163869123|ref|YP_001610362.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476] gi|189035963|sp|A9IYI2|TILS_BART1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161018809|emb|CAK02367.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476] Length = 495 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 56/389 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS+ L+ + L + + A++VDH LR+ + E V+++C Sbjct: 21 VILAVSGGSDSLALMFLVKEYL-ETLLIPPEIIAVTVDHQLRKESAREAEIVAEICRDHH 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H V W+ KP+T L +AR ARY L+ + A+ A+LIMT HT +DQ+ET MR QR Sbjct: 80 IKHITVRWEGKKPKTHLAFSARIARYDLLVQEAQKQGASLIMTGHTLNDQVETYQMRCQR 139 Query: 142 DYAEKGM---GLSGMCDT------------------------------------ILYDLN 162 +G + MCD +LY+ Sbjct: 140 LQKRRGALRDEVGAMCDGGAASGFAGALRDKAGARRDEDYVRETRKNIAEKSYGVLYERG 199 Query: 163 L-------------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 L + RP L +R+ +R++L + +W +DP+N D FERVRVR+ + Sbjct: 200 LSCIPREALLHRKVRLIRPLLGVQRQTLRNYLRLQGKTWIDDPTNEDRNFERVRVRQSLS 259 Query: 210 DIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTVHM-RSIIAISQDILNIDSTLLFYL 267 L + K+ K R + N +++ +TV R I L S F + Sbjct: 260 SQKLVNIAQKINKAAWQRRQQAQNIADLILALDITVQYGRCFIVKPAPFLQKHSCFPFVV 319 Query: 268 LRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 + + GG L + SM L L S ++ + VI+ + + R RN+ Sbjct: 320 GLFAVLMGGGFYLLSNQKLSMLVQKLCLNSPEKRRFTCAGCVIEYNKEGIALWRERRNMK 379 Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355 ++ P+ET +WDGRY+ N I++G Sbjct: 380 EALVEPDETLLWDGRYRITNHGSEAIKVG 408 >gi|218509292|ref|ZP_03507170.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli Brasil 5] Length = 312 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 132/246 (53%), Gaps = 16/246 (6%) Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR- 209 SG+ D +L+D WI RP L R DIRSFL +R ++W +DPSN D ++ERVRVRR + Sbjct: 11 SGIADAVLFDRRFWILRPLLFSSRADIRSFLRERRVAWIDDPSNEDVKYERVRVRRQLSA 70 Query: 210 ----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF 265 + D+ A + + R+ +++A A + ++ + + + D L D +L Sbjct: 71 DPATETDIRAAWKE-------RLALSSAAAEWLDRHFRLQGGLLGQVLPDGLRQDHAVLA 123 Query: 266 YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 Y L A+ GGQ PG MER++LF + +++GRVV D R + L++ R R + Sbjct: 124 YALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMTVGRVVFDLRRDGLYLARESRGI 183 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP---SGI-PPIIAQRALSSMP 381 L L P E VWDGR++ N S + I+I Q R + +P +GI PP + S++P Sbjct: 184 LPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSPIPVLVTGIQPPRVGAVNDSTVP 243 Query: 382 SKEGGK 387 + + Sbjct: 244 DESAAR 249 >gi|319406243|emb|CBI79880.1| tRNA(Ile)-lysidine synthase [Bartonella sp. AR 15-3] Length = 485 Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 166/384 (43%), Gaps = 51/384 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGGSDS+ LL + L + +++DH LRE + E V+ +C + Sbjct: 21 LILGVSGGSDSLALLFLVKEHLKTLPIAP-EVIVVTIDHQLREESAYEAENVAKICYAFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H +V W+ KPQT + AR ARY L+ + A+ ATLIMT HT +DQ ET MR QR Sbjct: 80 IKHIIVRWEGKKPQTKISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQR 139 Query: 142 ---------------------------------------------DYAEKGMGLSGMCDT 156 D GLS M Sbjct: 140 SQKKTEAARHETSEMPWKDREKDKAPANEEMEISKENSHKRLVQKDEERYERGLSCMPRE 199 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 L + + RP L RR+ +R++L R +W +DP+N D +FERVRVR F+ L + Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLSLRGSTWIDDPTNEDLKFERVRVRHFLHQKKLTEI 259 Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 K+ K RV+ +++ +TV + I L F ++ + + Sbjct: 260 AQKVHKATVQRRVQAQKVADLILALDITVEYGHCFIGKPPSFLQQHHAFPF-VVGLFIVL 318 Query: 275 CGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP 332 GG L + + + L L ++ ++ VI+ L I R R++ + P Sbjct: 319 MGGSSYLLSSQKLAALDQKLCLHDLEKKRFTLAGAVIEYSRKGLAIWREARHIQKATIAP 378 Query: 333 EETTVWDGRYQFQNLSDSLIQIGP 356 ET +WD RYQ N + I +GP Sbjct: 379 GETFIWDQRYQIINHDTTAICVGP 402 >gi|304393350|ref|ZP_07375278.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130] gi|303294357|gb|EFL88729.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130] Length = 344 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 104/337 (30%), Positives = 157/337 (46%), Gaps = 18/337 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGGSDS LL LH R K A +VDH LR A +E V VC +L Sbjct: 8 VLVAISGGSDSSALLHRLH-----REIAKGNLFAATVDHGLRPEAAEEALQVEAVCQKLD 62 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +AH+ + W K A+AR ARY L+ HA+++ A I HT DDQ ETV+MR+ R Sbjct: 63 VAHATLRWSGGKKTA---ASARAARYDLLVAHAQSLGAATIALGHTMDDQAETVFMRAMR 119 Query: 142 -DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 GL+GM + L + + RP L RR +R L ++W EDP+N D E Sbjct: 120 LRPTSNTRGLAGMT-ACTHHLGVTLWRPLLSTRRTALREDLSAAGLTWIEDPTNQDTSTE 178 Query: 201 RVRVRRFVRDIDLHALYL-KMKKFQDL----RVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RVRVR ++ H+ + + +F + R + A + Y+ + I + Sbjct: 179 RVRVR---NQLEAHSSTVHHLARFAAICAQSRSWLAQETATAMRNYVRWRNADNVWIISE 235 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 I + +L +L V GGQ P + V ++ K S+GR V+ + Sbjct: 236 IPRLQKLVLREVLSVLIMAAGGQPYRPALAKLYPVADAVERNKNLRYSVGRSVVQVLGDT 295 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 + ++R P + +G Y+F++ +D I Sbjct: 296 IMVSREGLRRNEKPSKPTTESASNGLYRFRSSADDPI 332 >gi|319404754|emb|CBI78356.1| tRNA(Ile)-lysidine synthase [Bartonella rochalimae ATCC BAA-1498] Length = 487 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 55/386 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG DS+ LL + L + +++DH LRE + E V+ +C L+ Sbjct: 21 LILGVSGGGDSLALLFLVKEHLKTVPLAP-EVIVVTIDHQLREESAYEAESVAKICHALQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H VV W+ KP+T + AR ARY L+ + A+ ATLIMT HT +DQ ET MR QR Sbjct: 80 IKHIVVRWEGKKPRTQISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQR 139 Query: 142 D---------------YAEKGM------------------------------GLSGMCDT 156 + E+G GLS M Sbjct: 140 SQKKTDGAQQEIPEILWEERGKERESANEEMQILKEKSQKRSAENDEERYERGLSCMPRE 199 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 L + + RP L RR+ +R++L + W +DP+N D +FERVRVR + + + Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLSLQGSKWIDDPTNEDLKFERVRVRHVLHQKKMTEI 259 Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 K+ K RV+ +++ +TV + R I L F ++ + + Sbjct: 260 AQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGQPPSFLQKHHAFPF-VVGLFIVL 318 Query: 275 CGGQISLPGYRSM----ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330 GG L + + +++ L KR ++ + R+ +W R R++ ++ Sbjct: 319 MGGSSYLLSSQKLAVLDQKLSLHNPEKKRFTLAGAVIEYSRKGIAIW--REARHIQEAMI 376 Query: 331 YPEETTVWDGRYQFQNLSDSLIQIGP 356 P E +WD RYQ N S I++GP Sbjct: 377 APGEIFIWDQRYQIINHDTSAIRVGP 402 >gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 443 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 114/400 (28%), Positives = 183/400 (45%), Gaps = 31/400 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+++AVSGG DSM LL+ R+ S +VDH LR + E +V+ RL Sbjct: 26 HVVLAVSGGPDSMALLVLASEWRQRRNGAPPSLSVATVDHGLRPESPREAEFVASEAQRL 85 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLETVYMR 138 + H + W KP G+ AAR ARY L+ +HA+ ++A+ ++TAH DQ ET MR Sbjct: 86 GLPHVTLPWTGEKPSRGIPDAARRARYRLLDDHARALSASDVAVVTAHHQGDQAETFAMR 145 Query: 139 SQRDYAEKGMGLSGM-CDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G L+GM + +L++ + + + RP L + + + L R +S +DPSN+D Sbjct: 146 LARGAGVNG--LAGMPAERVLHEGSTVSLVRPLLAFAKSRLIATLEARGLSSVDDPSNSD 203 Query: 197 DRFERVRVRRFVRDIDLH-----ALYLKMKKFQDLRVKVNNAVAMLIPKY-LTVHMRSII 250 R+ER R+R + D+D AL ++ + + A L+ Sbjct: 204 HRYERARMRSALSDLDAAGISPAALATSARRLGEAEAALRYADECFAATLALSFGNEVFA 263 Query: 251 AISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 A ++ LL LL A GG P +E + L++ + ++G V++ Sbjct: 264 AFDRNAFRAGPALLRQRLLGSLIARYGGASERPDLVEIEDLTARLQAEDKSTATLGGVMV 323 Query: 310 DRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQI-----GPQSYRKA 362 + F+ + R L LIL P E+ WD R+ Q +D++ + G ++Y + Sbjct: 324 SSGSRFVRVWREAGRLTQSDLILSPGESRTWDRRFIVQRAADAIGAVKVRPLGAENYARI 383 Query: 363 D---VPSGIPPIIAQRALSSMPSKEGGK-----PLLAPFS 394 PP RA ++PS G P LAPF+ Sbjct: 384 AGRLAAKYRPP---SRAAHALPSFWQGDDLVAVPSLAPFA 420 >gi|319407718|emb|CBI81366.1| tRNA(Ile)-lysidine synthase [Bartonella sp. 1-1C] Length = 487 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 106/386 (27%), Positives = 169/386 (43%), Gaps = 55/386 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG DS+ LL + L + +++DH LRE + E V+ +C L+ Sbjct: 21 LILGVSGGGDSLALLFLVKEHLKTMPLAP-EVIVVTIDHQLREESAYEAESVAKICHALQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H +V W+ KP+T + AR ARY L+ + A+ A LIMT HT +DQ ET MR QR Sbjct: 80 IKHIIVRWEGKKPKTQISEKARIARYDLLFKEAQKQGAALIMTGHTLNDQAETYQMRVQR 139 Query: 142 -----DYAEKGM----------------------------------------GLSGMCDT 156 D A++ + GLS M Sbjct: 140 SQKKTDSAQQEIPEALSKERRQERESANEEMQILKEESQKRSTEKDEERYERGLSCMPRE 199 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 L + + RP L RR+ +R++L + W +DP+N D +FERVRVR + L + Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLFLQGSKWIDDPTNEDLKFERVRVRHVLPQKKLTEI 259 Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 K+ K RV+ +++ +TV + R I L F ++ + + Sbjct: 260 AQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGKPPSFLQKHHAFSF-VIGLFIVL 318 Query: 275 CGGQISLPGYRSM----ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330 GG L + + +++ L KR ++ + R+ +W R R++ ++ Sbjct: 319 MGGSSYLLSSQKLAVLDQKLSLHDPEKKRFTLAGAVIEYSRKGIAIW--REARHIQKAMI 376 Query: 331 YPEETTVWDGRYQFQNLSDSLIQIGP 356 P ET +WD RYQ N I +GP Sbjct: 377 APGETCIWDQRYQITNHDTLDICVGP 402 >gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism] Length = 460 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 101/333 (30%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 + VAVSGG DSM L + L+ R G+ + S A++VDH LR A DE R V Sbjct: 39 LAVAVSGGGDSMALCL-----LAQRWAGRRRGSTTALTVDHGLRPEAADEARQVGRWLKA 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +AH V+ W+ KP +G+ AAAR ARY L++ A+ ++ AH +DQ ET +R Sbjct: 94 RGVAHHVLEWRGPKPVSGIQAAARAARYGLMTAWAREAGVLHLLVAHHQEDQAETFLLR- 152 Query: 140 QRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 E+G G+ G+ I+ + + RP L R +R+ W EDPSN D Sbjct: 153 ----LERGSGIDGLSAMAAIVETPAVRLVRPLLGVPRARLRATARAFGQEWLEDPSNRDA 208 Query: 198 RFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 F R R+R + + L K + +R+ + NA + L+ TVH + Sbjct: 209 AFARTRIRAALPALARSGMSPAVLAEKANRVGHVRIALENAASALLAVCCTVHPAGYARL 268 Query: 253 SQDILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLKSGKRGCV-SIGRVVID 310 Q I+ + + +C GG+ P +ER+ + GK G ++G I Sbjct: 269 DQSIVAAAPEDVSFRALARILMCVGGREYAPRREKLERLYAVVVGGKLGKARTLGGCRIL 328 Query: 311 RRANFLWITRAVRNLPTLI-LYPEETTVWDGRY 342 + + R +R +P I P VWDGR+ Sbjct: 329 AEGYRILVCREMRGMPEPIAAVPGTRVVWDGRF 361 >gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12] gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12] Length = 417 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 105/192 (54%), Gaps = 7/192 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DSM LL H + + + A SVDH LR A DE+ + C+ L Sbjct: 25 IGVAMSGGGDSMALL---HLLADWAAQSGAELRAASVDHGLRPEAADEIALAAKTCAALG 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H ++W + P L AAAR+ARY L+S+ A+ ++ HT DDQ ETV +R R Sbjct: 82 IPHDSLTW-DEAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQDDQAETVLLRLLR 140 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G L+ M L +W+ RP L R +R+ L R ++W EDPSN D RF+R Sbjct: 141 GSGVDG--LAAMRPRTLRAGTVWL-RPLLAVSRAALRADLTARGVAWAEDPSNADLRFDR 197 Query: 202 VRVRRFVRDIDL 213 VRVR+ + +DL Sbjct: 198 VRVRQAMAALDL 209 >gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B] gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B] Length = 426 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 9/208 (4%) Query: 1 MFLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M L+P E R V P+ + +AVSGGSDS+ L+ L + L+ ++ + + + Sbjct: 1 MLLTPTEEALIAEIRARIGVLPSKLGIAVSGGSDSIALM-HLFAALARKNGADLAIA--T 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH LR + E R V+ + L ++H +++W++ L A AR ARY L+ E A Sbjct: 58 VDHGLRTDSLIEARGVAQQAADLGLSHDILTWQHPAQSGNLQAEARAARYRLLGEWATAR 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + HT DDQ ET MR +R A GLSGM D + I RP L RR D+ Sbjct: 118 EIEAVAVGHTADDQAETFLMRLRR--ASGVAGLSGMASRHHRD-GIEILRPLLGIRRSDL 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205 R++L R I+W +DPSN D +FERVRVR Sbjct: 175 RAYLTAREINWVDDPSNLDMKFERVRVR 202 >gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like [Ruegeria sp. TM1040] gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040] Length = 430 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 13/210 (6%) Query: 1 MFLSPIE-SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M L+P E ++ +R+ + P + VAVSGGSDS+ L+ H + + + + Sbjct: 1 MLLTPTEEALTSAIRARIGPLPEKLGVAVSGGSDSVALM---HVLATMARAEDTALAVAT 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH LR ++ E +V+ L ++H ++W++ L A AR ARY L+ + A+T Sbjct: 58 VDHGLRPESRREAEFVAQQAHDLGLSHQTLTWQHPADSGNLQAEARAARYRLLGDWARTQ 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRRE 175 + HT DDQ ETV MR +R G++G+C T + + + RP L RR Sbjct: 118 GLGAVAVGHTADDQAETVLMRLRR-----ASGVAGLCGMPTCHHRDGIDVLRPMLDLRRS 172 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D+R++L R+++W EDPSN D +FERVR+R Sbjct: 173 DLRAYLTARDVAWIEDPSNLDMKFERVRIR 202 >gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I] gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I] Length = 417 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 102/342 (29%), Positives = 158/342 (46%), Gaps = 18/342 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR RS + PA + +A+SGG DSM L+ LH G+++ A +VDH LR + D Sbjct: 12 VRSQFRSAL-PAKLGIALSGGGDSMALMHLLHDCFGS---GEVQLFAATVDHGLRPGSAD 67 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHT 127 E +RL I H V+ W + +PQ G L A AR ARY L+ A+ ++ HT Sbjct: 68 EAAAAGAAAARLGIPHEVLHWAD-RPQDGNLQAQARAARYELLCGWARQHGIPVLALGHT 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV MR R A GLSGM + + + RP L R ++R +L R + Sbjct: 127 ADDQAETVLMRMAR--ASGVTGLSGMAARRTHK-GVTLLRPLLDVTRSELRRYLEARGVD 183 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----KKFQDLRVKVNNAVAMLIPKYL 242 W EDPSN D RFERVRVR+ + + L ++ + R ++ V + Sbjct: 184 WAEDPSNEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYVFLAARDLA 243 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 V +++ + + + LL + G P ME+ + ++G + Sbjct: 244 HVQAGAVVLCQRKFRTLPVEISHRLLVRAVQWVSGAAYPPRRVPMEKAVQAARNGSSATL 303 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344 + +V A +W+ R + + P + +WDGR++ Sbjct: 304 AGCHLVST--AKQVWVCREYNAVNGVTALPGQ--LWDGRWKI 341 >gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101] gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101] Length = 419 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 99/336 (29%), Positives = 150/336 (44%), Gaps = 25/336 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I VAVSGGSDS+ LL LH S +VDH LR A E V+D C Sbjct: 18 PKTIGVAVSGGSDSLALLHLLHDFAVTHS---CTLHVATVDHGLRREAGAEAAMVADTCR 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H V+ W+ L AR+ARY L+++ + +I HT DDQ ET MR Sbjct: 75 SLGLDHEVLHWQGWDRSGNLQNEARKARYQLLADWGRRRQLDVIALGHTADDQAETFLMR 134 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GLS M D + WI RP L RR ++++L I W +DPSN D R Sbjct: 135 LARRAGVD--GLSAMPDRFEREGMTWI-RPLLGARRAALQAYLESNGIQWADDPSNEDTR 191 Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++RVR+R + ++ AL + + + +N+ + Y+++H +AI Sbjct: 192 YDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALNHQMQQTARAYVSLHA-GAVAID 250 Query: 254 QDILN-----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 LN I L+ + L+ G P ++ VM L + ++ Sbjct: 251 VAGLNAQPFEIRRRLIAHALK----WVNGAYYAPRSAALGDVMAALATAP--SATLQGCE 304 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344 + R LW+ R +R + + + +WDGR++ Sbjct: 305 LRHRVGKLWVFRELRVVSRMTCDIRD--LWDGRWRI 338 >gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814] gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814] Length = 473 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 10/221 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDR--SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I +AVSGGSDS+GLL LS A+++DH +R A E YV +C Sbjct: 58 IGIAVSGGSDSLGLL-----CLSAEWAKLNNWHLQALTIDHGMRPEAAQEAVYVQSICET 112 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I H+ ++W+ + Q AR AR+ L E AK N +M HT DD+LET+ +R Sbjct: 113 LNIPHTTMNWRCPQDQRATQENARMARHLLFCEWAKRQNIQFLMLGHTLDDRLETLLIRE 172 Query: 140 QRDYAEKGMGL--SGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +E G+ S C I + +L + RP R+D+ + L++ +ISW DPSN D Sbjct: 173 SSNSSEYGLAAMPSQSCSPIWPEGRDLKLLRPANNLTRQDLSAILIETDISWVCDPSNQD 232 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 D++ERVR+R+ + + ++K + L +K V L Sbjct: 233 DKYERVRIRKKLEAMPQQVKQKSIEKLKKLTLKRQKLVTDL 273 >gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM 2831] gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM 2831] Length = 345 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 5/184 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DS L+ H+ R +VDH LR + E V L Sbjct: 1 MLLAVSGGPDSSALM---HAAARLRDATGASLRVATVDHGLRSESGAEAEAVGRAARALG 57 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H++++W +KP TGL AAR ARYAL++ HA+ + A L++T HT DDQ ETV +R Sbjct: 58 LPHAILTWAGAKPGTGLQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAETVLIRLAA 117 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL+GM L + RPFL + + ++ R I++ DP+N D RF R Sbjct: 118 GSGP--AGLAGMRAERDLGPGLALGRPFLHLPKASLVAWCAARGIAYARDPANGDPRFAR 175 Query: 202 VRVR 205 R+R Sbjct: 176 GRLR 179 >gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003] gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003] Length = 429 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 106/206 (51%), Gaps = 19/206 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAIS 57 + L E+ VR+ + + VAVSGGSDS+ L+ ALH V +A++ Sbjct: 22 LLLWAAEAAVETVRTRMTAPRLAVAVSGGSDSLATLVLLSALHPV-----------AAVT 70 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH LR A E V C+ I HS++ W + LM AAR AR LI A+ Sbjct: 71 VDHGLRPEAAAEAEVVGQFCAERGIDHSILRWDGRGARGNLMDAARRARLRLIGAWAQDR 130 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRRED 176 + HT DDQ ET MR R E G+ GLSGM ++ + LW RPFL R + Sbjct: 131 GIGAVALGHTGDDQAETFLMRLAR---EAGLEGLSGMRESFESEGVLWF-RPFLSQTRAE 186 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERV 202 +R L ++ I W EDPSN +DRF+RV Sbjct: 187 LRGHLQRQGIGWIEDPSNENDRFDRV 212 >gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6] gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6] Length = 418 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 7/194 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGG DS+ LL L S ++ A +VDH LR+ + +E ++ ++V Sbjct: 21 PPRVGVAVSGGGDSLALLHLLKSCFDGE---PVEILAATVDHGLRKESAEEAKWTAEVAR 77 Query: 79 RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H V+ W++ +TG L AR ARY+L++ A+ ++ HT DDQ ETV M Sbjct: 78 GLGLRHEVLIWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTLGHTADDQAETVLM 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A GL+G+ + + + RP L RRE +RS+L W +DPSN D Sbjct: 138 RLSR--AGGVNGLAGIPQRRTLN-GVTLLRPLLEVRREALRSYLRDEGHDWIDDPSNDDS 194 Query: 198 RFERVRVRRFVRDI 211 RFERVR R+ + ++ Sbjct: 195 RFERVRFRKALENL 208 >gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45] gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45] Length = 423 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 6/194 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGG DSM LL LH + + + A++VDH LR A E +V+ Sbjct: 25 PPRLGVAVSGGGDSMALLSLLHGLCA---AAGTQLEAVTVDHGLRPEAATEAAFVAHHAG 81 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + W+ Q L AAREARY L+++ A + I HT DDQ ETV MR Sbjct: 82 ALGLPHETLQWRGWDGQGNLQNAAREARYRLMADWAARRDLPCIALGHTADDQAETVLMR 141 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GLS M W+ RP L RRE +R +L + + W +DPSN D R Sbjct: 142 LARRSGVD--GLSAMAPQSRRHGVTWL-RPLLFARRESLRDYLRRAGLEWVDDPSNDDPR 198 Query: 199 FERVRVRRFVRDID 212 + R++ R+ + +D Sbjct: 199 YARIQTRQSLAALD 212 >gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597] gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597] Length = 414 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 150/330 (45%), Gaps = 19/330 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGGSDS+ LL LH S + A++VDH LR + E V ++ RL + Sbjct: 23 VAVSGGSDSLALLHLLHDWASGSG---LALHAVTVDHGLRADSAAEAACVGEIAGRLGVP 79 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H+V+ W L AR ARY L++E A+ I HT DDQ ET+ MR R Sbjct: 80 HTVLHWTGWDGAGNLSDRARRARYDLMAEWARGAGVAGIALGHTADDQAETLLMRLAR-- 137 Query: 144 AEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G G++G+ + ++ RP L RR ++R +L R+ W EDP+N D RF+R Sbjct: 138 ---GSGVAGLAAMSPGRSHAGVTFLRPLLTVRRAELRRYLDARDQKWIEDPTNEDMRFDR 194 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + RR +R+++ + AL + LR + + ++ ++ Sbjct: 195 PKARRALRELEPLGLTVEALNMVAGNMAALRKTLGHYAEAEARAHVQFEAGDVLIPCAAF 254 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 + +L+ + G+ P ++R++ + G+ + + +I R + + Sbjct: 255 GAMPGETARLILQAALHWVSGEEYPPRRGGIQRLVEAIARGE--GMPLSGCLIAIRDDTI 312 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQN 346 I+R + + P T+WDGR++ Sbjct: 313 RISREPAAVAETVAAP--GTLWDGRWRLTG 340 >gi|163742231|ref|ZP_02149619.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10] gi|161384561|gb|EDQ08942.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10] Length = 386 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/393 (26%), Positives = 173/393 (44%), Gaps = 39/393 (9%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L+ LH +D ++ +VDH LR T+ DE + V+ ++L +AH ++ W + Sbjct: 1 MALMHLLHECFADVG---VEICVATVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQWCD- 56 Query: 93 KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 +P G L AR ARYAL++ A+ + + + HT DDQ ET+ MR R G Sbjct: 57 RPTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSG- 115 Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 LS M + + + + RP L RE++R++L R W EDPSN D RFERVRVR+ + Sbjct: 116 -LSAMSRSRAME-GVTLLRPLLEVTREELRAYLRARECCWVEDPSNEDARFERVRVRQAM 173 Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS------- 261 L L L +++ + + A L Y + R + + + ID Sbjct: 174 E--ALEPLGLTVERLAAVARNMGAAREAL-DWYTFLAARDMAEVRDGAIVIDQRQFRTLP 230 Query: 262 -TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + LL S G + P M + ++ G G ++G + R WI R Sbjct: 231 DEIAHRLLVRSVQWVSGAVHPPRRDPMVKARDAVRHG--GSFTLGGCRMITRRQRTWICR 288 Query: 321 AVRNLPTLILYPEETTVWDGRYQF--QNLSDSLIQ-IGPQS------YRKADVPSGI--- 368 + + + P +WD R++ + D ++ +GP +R+A+VP + Sbjct: 289 EYKPVAEEVALP--GKIWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQAEVPGAVLQA 346 Query: 369 -PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400 P + Q L + P G A + +F Sbjct: 347 TPAVWKQDELIAAPLAGNGNGWTAELVQNSEEF 379 >gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444] gi|122942816|sp|Q0C5V2|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444] Length = 367 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 25/237 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGGSDS+ LLI H + R G++ A++VDH LR ++ E V +C+ + Sbjct: 27 VGVAVSGGSDSLALLILAHRWAARR--GRV-LRALTVDHGLRPESRAEAEAVGRLCADMG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H ++ + + P+ +A R R+A ++ + L++T HT DDQ ET MR+++ Sbjct: 84 IEHDILRLEGAAPR---QSALRRGRHAALARTIADKSGHLLLTGHTADDQAETFLMRARQ 140 Query: 142 DYAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 GL+GM L + ++I+RP L RRE +R+FL + W +DPSN + Sbjct: 141 GSGW--YGLAGMRPLSLSPVWPEGEGVFIARPLLGIRREALRAFLRDEGLGWADDPSNDN 198 Query: 197 DRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 FERVR+RR + R++ + +L + +FQ LR+ + A I +++T ++R+ Sbjct: 199 PAFERVRMRRLLCPEMSRNVPVLSL---VDRFQTLRMIEDGA----IWRWMTANVRA 248 >gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654] Length = 417 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/186 (41%), Positives = 106/186 (56%), Gaps = 8/186 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++VAVSGG DSM LL + R+ GK SA++VDH LR+ A E V+++C+ L Sbjct: 22 NLVVAVSGGGDSMALLHVAQAW--GRTQGK-AVSALTVDHGLRDEAATEAARVAEICADL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +AH + W + Q L A AR ARY LI++ A A LI HT DD ET MR Sbjct: 79 GVAHRTLDWPDWDGQGNLQAMARAARYDLIADAAPAGAAILI--GHTMDDAAETFLMRLA 136 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M T +LW+ RPFL RR +R +L R I W +DP+N D +++ Sbjct: 137 RGSGVD--GLSRMRSTWTDRGHLWL-RPFLTVRRAALRDWLHDREIGWIDDPTNDDTQYD 193 Query: 201 RVRVRR 206 RVR+R+ Sbjct: 194 RVRMRQ 199 >gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506] gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506] Length = 458 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 28/344 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+AVSGG DS+ LL+ L S L + F A +V+H LR A E +V++V Sbjct: 37 PQRLLIAVSGGPDSLALLV-LASRLPNLVF---AVHAATVNHGLRREADMEAAHVAEVSQ 92 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RL + H ++W+ L AAAREARY L++E A+ I A+ I+TAH DQ+ETV Sbjct: 93 RLGVPHETLTWEGWDGSGNLQAAAREARYRLLAEEARRIGASAILTAHHRGDQIETVLQA 152 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R E L+GM + + L + RPFL E + + L + I+ +DPSN D R Sbjct: 153 LERGDREN--RLAGMRASRDLEPRLTLVRPFLEIPAEQLWAVLAEAGIASVDDPSNADRR 210 Query: 199 FERVRVR---------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 F RVR R R +D+ + +++ + + M + Sbjct: 211 FTRVRHRHAIAGMSDERIADIMDVQRRAAATRAREEIALAGTVSTMMAHGDLIFTEEGGG 270 Query: 250 IAISQDILNI-----DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VS 303 +AI D + LL ++R + GG P ++ R+ L+ GC + Sbjct: 271 VAIGMDAFRVMPSVEAEDLLARVVRAA----GGSTRPPERSAVARLAQKLRGRAEGCATT 326 Query: 304 IGRVVIDRRANFLWITR--AVRNLPTLIL-YPEETTVWDGRYQF 344 +G + N + I R LP++ + + V+DGR+ Sbjct: 327 LGGARLLNDGNVIQIHREYGRTGLPSIAEPWRLDRLVFDGRFDI 370 >gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b] gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b] Length = 417 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 25/338 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VAVSGGSDS+GLL+ VL+D R G A++VDH LR A E V+ C Sbjct: 21 PERLAVAVSGGSDSLGLLV----VLNDWRLAGGPALHAVTVDHRLRPEAAQEAAKVAADC 76 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL + H +++W + + L AR ARY L+++ A+ I AHT DDQ ET M Sbjct: 77 KRLGVPHDILTWTDWDGRGNLSDQARRARYGLMAQWARGQGIACIAIAHTADDQAETFLM 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R GLS M + + RP L R ++R+ L R ++W EDPSN D Sbjct: 137 RLARGAGVD--GLSAMSER-FESHGVTFCRPALAIFRHELRAALEGRGMTWVEDPSNEDP 193 Query: 198 RFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R+ERV+ R +++ I L + D+R + +++ + +I Sbjct: 194 RYERVKARAALQELAPLGITTAGLLAMAHRMSDVRQTLYLYALEAARQHVRIQSGDLIVD 253 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK----RGCVSIGRVV 308 + +++ S G +P R+++ ++ + G+ +GC + Sbjct: 254 RPGFDGLPRETARRIMQTSLKWISGAEYVPRGRAVDDLLDAIAEGRDMTLQGC------L 307 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 + R + L ITR + + + + T VWDGR++ + Sbjct: 308 VTLRKDHLRITREWKAVASERC--QVTHVWDGRWRLEG 343 >gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222] gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222] Length = 409 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 100/332 (30%), Positives = 143/332 (43%), Gaps = 27/332 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS L+ H +G+ + A +VDH LR + DE R + L I Sbjct: 26 IALSGGGDSTALMHLAHG------WGRARLLAATVDHGLRPGSADEARQAGLAAAALDIP 79 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H + W + LMAAAREAR L++ A + ++ HT DDQ ET+ MR R Sbjct: 80 HETLRWTR-RGGGNLMAAAREARLQLLAGWAGRHGLSAVLLGHTLDDQAETLLMRLNRGA 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G LS M W+ RP L R D+R +L R + W +DPSN ++ FERVR Sbjct: 139 GVDG--LSAMAPMREAFGVTWL-RPMLEIGRADLRHWLAARGLGWADDPSNENEDFERVR 195 Query: 204 VRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 VR+ + +DL L + +D + VA + A L Sbjct: 196 VRKAIAALDLPMRQLAQSAANLAMARDALCDFASRVAEGAQSRAGSLALPLDAFRAAPLE 255 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 I LL LR GG P + + L+ G R +++ V+ + R FLW+ Sbjct: 256 IRRRLLVAGLR----FVGGSDYPPRRGPLLHALAVLEDGGR--LTLEGVIAEPRDGFLWL 309 Query: 319 TRAVRNLPTLILYPEET---TVWDGRYQFQNL 347 VR + P +WD R+Q L Sbjct: 310 ---VREPAAALRSPAAEGADAIWDRRWQVAGL 338 >gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131] gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131] Length = 412 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 24/329 (7%) Query: 24 VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL +A + ++ R A++VDH LR A DE R V+ VC+ L + Sbjct: 21 LAVSGGGDSMALLHLAAETGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H ++ W+ + LM AR AR LI++ A+ + HT DD ET MR R Sbjct: 73 PHDILRWEGWDGRGNLMDQARRARLRLIADWARAAGLEAVALGHTRDDVAETFLMRLARG 132 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ M + +W+ RP L RE++R+ L +R SW EDPSN + FERV Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFERV 189 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256 RVR+ + L L L+ ++ D+ +V +A+ + + + L R + ++ Sbjct: 190 RVRQAME--SLADLGLRPERLADVASHLAEVRDALDLQLREAAGRLAQVDRGDVVLASAA 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L + +L LLR + P ++ + + L G V++ + R L Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGQAIRRLSEGT--TVTLHGCRLAPRREGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQ 345 I R + + +++ E WDGR+ Q Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQ 332 >gi|163738352|ref|ZP_02145767.1| PP-loop family protein [Phaeobacter gallaeciensis BS107] gi|161388273|gb|EDQ12627.1| PP-loop family protein [Phaeobacter gallaeciensis BS107] Length = 386 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 173/393 (44%), Gaps = 39/393 (9%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L+ LH +D ++ +VDH LR T+ +E + V+ ++L +AH ++ W + Sbjct: 1 MALMHLLHECFADVG---VEICVATVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQWCD- 56 Query: 93 KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 +P G L AR ARYAL++ A+ + + + HT DDQ ET+ MR R G Sbjct: 57 RPTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSG- 115 Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 LS M + + + + RP L RE++R++L R W EDPSN D RFERVRVR+ + Sbjct: 116 -LSAMSRSRAME-GVTLLRPLLEVTREELRAYLRTRECCWVEDPSNEDARFERVRVRQAM 173 Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS------- 261 L L L +++ + + A L Y + R + + + ID Sbjct: 174 E--VLEPLGLTVERLAAVARNMGAAREAL-DWYTFLAARDMAEVCDGAIVIDQRQFRTLP 230 Query: 262 -TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + LL S G + P M + ++ G G ++G + RA WI R Sbjct: 231 DEIAHRLLVRSVQWVSGAVHPPRRDPMIKARDAVRHG--GSFTLGGCRMITRAQRTWICR 288 Query: 321 AVRNLPTLILYPEETTVWDGRYQF--QNLSDSLIQ-IGPQS------YRKADVPSGI--- 368 + + + P +WD R++ + D ++ +GP +R+ +VP + Sbjct: 289 EYKPVAEEVALP--GKIWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQTEVPGAVLQA 346 Query: 369 -PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400 P + Q L + P G A + +F Sbjct: 347 TPAVWKQDELIAAPLAGNGNGWTAELVQNSEEF 379 >gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114] gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 414 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/188 (39%), Positives = 97/188 (51%), Gaps = 6/188 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDSM LL+ L ++R+ + S +VDH LR A DE R V+ C+ Sbjct: 17 PKALGVAVSGGSDSMALLVLLCG-FAERN--GVALSCATVDHGLRPEAADEARSVAGYCA 73 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H + W+ AAR ARY L+++ A+ I HT DDQ ETV M Sbjct: 74 AHDVPHVTLKWEGWDGTGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQAETVLMG 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R A GLS M D L RP L R +R FL ++WCEDPSN D + Sbjct: 134 LAR--ASGVDGLSAM-PARRDDRGLCWHRPLLATSRAGLRGFLSANGVAWCEDPSNDDAQ 190 Query: 199 FERVRVRR 206 FER++ RR Sbjct: 191 FERIKARR 198 >gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1] gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1] Length = 419 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/337 (28%), Positives = 149/337 (44%), Gaps = 15/337 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGG DS+ LL L+ R I A +VDH LR A E V+ C Sbjct: 18 PPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAAQCR 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + W L AR+ARY L+++ A+ + HT DD ET MR Sbjct: 75 ALGVPHDTLMWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETFVMR 134 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G LS M I + RP L RR D+R+ L QR ++W +DPSN DD Sbjct: 135 LGRRAGVDG--LSAM-PAIFDRHGMRWHRPLLNARRADLRAHLTQRGVTWVDDPSNEDDS 191 Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 F RVR+R+ + +D AL + D R ++ + + V ++ Sbjct: 192 FARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQCGAVAMDW 251 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 Q + ++ + LL + A G P ++ V+ L G ++ + + Sbjct: 252 QALCDLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTALDDA--GAATVQGCELRLKH 309 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350 + LWI R ++ + + P + +WDGR++ + D+ Sbjct: 310 DKLWIYRELQAV-RAVDAPAD-ALWDGRWRLEPCGDT 344 >gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris CGA009] gi|61216538|sp|Q6NAQ6|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009] Length = 346 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 13/210 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58 +S E+ R F PA I++AVSGG DS+ L+ L+ R +K + ++V Sbjct: 9 VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMW-----LAARWRKALKRGPALAVVTV 62 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR A E R V + + L + H + W KP TG+ AAAR ARY L+++ AKT+ Sbjct: 63 DHGLRPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLAKAAKTLG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A+ +MTAHT DDQ ETV MR R GL+ M I D + ++RP L + + Sbjct: 123 ASHVMTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLI 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + L + I++ DPSN D RF R R+R + Sbjct: 180 ATLAKARIAFATDPSNADPRFTRPRLRELM 209 >gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029] gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 412 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 24 VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL +A + ++ R A++VDH LR A DE R V+ VC+ L + Sbjct: 21 LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 73 PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ M + +W+ RP L RE++R+ L +R SW EDPSN + F+RV Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256 RVR+ + L L L+ ++ D+ +V +A+ + + + L R + ++ + Sbjct: 190 RVRQAME--SLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVDRGDVVLAPPV 247 Query: 257 LNIDSTLLFYLLRVS 271 L + +L LLR + Sbjct: 248 LELPPEILRRLLRAA 262 >gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda] gi|226695543|sp|B3CUJ5|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda] Length = 441 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 162/338 (47%), Gaps = 30/338 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGGSDS+ L++ + +++ G+I + +++DH LR + E YVS +C +++ Sbjct: 25 IAVSGGSDSLALMLLVKH-WNEKVKGEI--TILTIDHHLRSESTSEADYVSSICQNIKLQ 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H + W + + A AR+ARY L++ + + + ++T H DD +E ++R R Sbjct: 82 HVTLHWIHKGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHADDIVENFFIRLLR-- 139 Query: 144 AEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G GL+G+ L+ + N+ I RP ++D++ +L Q+NI W DPSN+ +++ R Sbjct: 140 ---GAGLAGLSSHNLFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNSSNKYLRT 196 Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVK---------VNNAVAMLIPKYLTVHMRSII 250 +VR ++ + + H +++ K + + + VNN + + + ++ Sbjct: 197 QVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQALESVNNEIIHYVVHVVKIYSAGFA 256 Query: 251 AISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 I + + S +L YLL I G P + S++R+ L ++ Sbjct: 257 VIDRKLFKKASPEARYAILSYLL----MIVGANTKPPRFSSLQRISLHDIQEYNTYKTLH 312 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343 +++ ++ I R + + VWD R++ Sbjct: 313 GCIVEYSIEYIIIYREFGRCYPISQVVSNSVVWDYRFK 350 >gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062] gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062] Length = 441 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 26/347 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + VSGG+DSM LL L + F K A +V+H LR A E V+ C+R+ Sbjct: 29 IAIGVSGGADSMALLYLLKQWTQELGFAAPKLYAFTVNHGLRAEAASEAVGVAQYCTRIE 88 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H + W+ KP + + +AAR+AR+ L+ + ++ + AH +DQ ET R R Sbjct: 89 VPHETLLWEGDKPSSNIQSAARDARHRLLRQASEDHGCDALFLAHHLEDQAETFLTRLAR 148 Query: 142 DYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G G+ G+ I D + I RP L + +++ L ++ W EDPSN D++ Sbjct: 149 -----GSGVYGLA-CIRRDREMDGFHICRPLLNISKARLKAVLHSAHVPWFEDPSNEDEQ 202 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R++ R+ ++D L L K D ++ A + V +S S + Sbjct: 203 FTRIKFRQAQSELD--ELGLTATKLFDTARRMARAADAIDVWVDEVAEKSCTFHSAGPVR 260 Query: 259 IDSTLLFYL-----LRVSAAIC---GGQISLPGYRSMERVMLFLKS--GKRGCVSIG-RV 307 DS+ L Y+ LR+ + G +P +E + LKS G R G R Sbjct: 261 FDSSCLEYIPDEIGLRLVGRLVRYISGAPYMPRLAKLEGLYETLKSEEGARAATLGGVRF 320 Query: 308 VIDR-RANFLWIT--RAVR-NLPTLILYPEETTVWDGRYQFQNLSDS 350 + + + +W A R LP + + P + +WD R++++ S Sbjct: 321 ALAKPHEDGIWFCFREAGRAGLPEVEVKPGDEGIWDERWRYKAAHSS 367 >gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1] gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1] Length = 346 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 13/210 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58 +S E+ R F PA I++AVSGG DS+ L+ L+ R +K + ++V Sbjct: 9 VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMW-----LAARWRKSLKQGPALAVVTV 62 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR A E R V + + L + H + W KP TG+ AAAR ARY L++ AKT+ Sbjct: 63 DHGLRPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLANAAKTLG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A+ +MTAHT DDQ ETV MR R GL+ M I D + ++RP L + + Sbjct: 123 ASHVMTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLI 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + L + I++ DPSN D RF R R+R + Sbjct: 180 ATLAKARIAFATDPSNADPRFTRPRLRELM 209 >gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238] gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238] Length = 412 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 114/408 (27%), Positives = 185/408 (45%), Gaps = 31/408 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS L+ L+ S + + I+VDH LR A DEV V+ L Sbjct: 10 VVLAVSGGSDSTALMH-----LAAGSIDRARLHVITVDHGLRGVA-DEVALVAAQSEDLA 63 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI-MTAHTFDDQLETVYMRSQ 140 + HSV++W+ Q L AAAR R+A I++ A A + MT HT DDQ ETV MR Sbjct: 64 LKHSVLNWQWDG-QGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTHDDQAETVLMRLA 122 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G L+GM L I RP L+ R D+R++L + ++W +DPSN D RF+ Sbjct: 123 RGSGVAG--LAGMQSVGATPTGLRICRPLLQETRADLRAWLSEHGVTWSDDPSNDDLRFD 180 Query: 201 RVRVRRF---VRDIDLHA--LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RV+ R + ++ L + L Q R ++ + AM+ ++T + ++ + Sbjct: 181 RVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTDYAAMIAQSHITQSVGDVVFPATW 240 Query: 256 ILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + D + L ++ G P RS + L+ + ++ ++ Sbjct: 241 PNHGDVAIRLFRHALHFVGGGVGCGGAGGGDYP-PRSDATLSLWQAAQDGQGGTLHGCLV 299 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRK-----A 362 + I+R V P +P WD R+ +S + Q G + R Sbjct: 300 SVEDDHWRISREVAATPAPTSWPNRNRDLRWDNRWLLSEISGANTQ-GDLTVRALGDAIK 358 Query: 363 DVPSGIPPIIAQRALSSMPSK-EGGKPLLAPFSRFMTKFDLPVAYAFS 409 DVP+ + +R+L + P+ EG + AP + + FD + F+ Sbjct: 359 DVPNWRDVGLPRRSLMASPAVFEGESLVAAPIAGHQSGFDARIVADFA 406 >gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] Length = 371 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 12/188 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISVDHCLRETAKDEVRYVSDVC 77 +++AVSGG DS+ L+ L+ R +K A++VDH LR A E R V + Sbjct: 40 LVLAVSGGPDSVALMW-----LAARWRRAMKRGPDLVAVTVDHALRREAAREARQVKQLA 94 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + W KP TGL AAAREARYAL+ + A+++ A+ ++T HT DDQ ETV M Sbjct: 95 KSLSIPHRTLRWTGPKPATGLPAAAREARYALLFKAARSLGASHVLTGHTLDDQAETVLM 154 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R GLS M + D + RP L + + + L + I + EDP+N D Sbjct: 155 RISRGSGI--AGLSAMSRETMRD-GFVLVRPLLNVPKARLIATLKKAKIDYAEDPTNRDL 211 Query: 198 RFERVRVR 205 F R R+R Sbjct: 212 GFTRPRLR 219 >gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11] gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11] Length = 417 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 115/421 (27%), Positives = 184/421 (43%), Gaps = 48/421 (11%) Query: 4 SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 S +++R +R+ + P + VAVSGGSDS L+ L + +I A +VDH Sbjct: 3 SDADTLRAEIRARLPDPLPRRLGVAVSGGSDSTALMRLLADIAQRE---QIALFAATVDH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR A E V+++ I H + W+ L AR ARY L++ A+ Sbjct: 60 GLRADAASEAATVANLAHNWGIPHETLKWRGWDGTGNLQDHARRARYRLLTGWAQANGLG 119 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---CDTILYDLNLWISRPFLRCRRED 176 I HT DDQ ET+ MR R G+ ++GM +T+L RP L R Sbjct: 120 AIALGHTADDQAETLLMRLARAAGVSGLSAMAGMRREGETLLL-------RPMLAVTRAR 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235 +R +L + I+W +DPSN D RF+R++ R+ + L + + + RV N A A Sbjct: 173 LRDYLTAQGIAWIDDPSNQDLRFDRIKTRQALS--GLTQIGITAESLS--RVAENLAQAR 228 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR------VSAAI--CGGQISLPGYRSM 287 + +Y ++ + L +D L V AAI G P + ++ Sbjct: 229 EALAQYAQESAAGVMRVMDGDLCVDPEGFAALPEEIRRRLVVAAILWVAGGAYPPRHGAV 288 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 ++ + L +G+R +++G ++ R WI+R + + P E WDGR+ Sbjct: 289 DQALNALSAGQR--MTVGGCILSFRGKKTWISRELNAVSHKTANPGEP--WDGRWIVTGP 344 Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQR-------ALSSMPSKEGGKPLL-APFSRFMTK 399 + GP + +A +GI + R AL S P+ G LL AP + F Sbjct: 345 T------GPDAEIRALGDAGILQLEDWRSVAKPRTALLSTPAVWAGDTLLAAPLAGFAQG 398 Query: 400 F 400 + Sbjct: 399 W 399 >gi|163733524|ref|ZP_02140967.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149] gi|161393312|gb|EDQ17638.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149] Length = 414 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 96/188 (51%), Gaps = 6/188 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDSM LL+ L + +I S +VDH LR A E V+ C+ Sbjct: 17 PKALGVAVSGGSDSMALLVLLRDYAARN---RIALSCATVDHGLRPEAAAEAEGVAAYCA 73 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H + W + AAR ARY L+++ A+ T I HT DDQ ETV M Sbjct: 74 AHDVPHVTLKWTGWNGKGNTQNAARVARYRLLADWARGQGITDIALGHTQDDQAETVLMG 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R A GLS M D L RP L R +R FL R ++WCEDPSN DD+ Sbjct: 134 LAR--ASGVDGLSAMA-ARRDDRGLCWHRPLLAMSRAQLRGFLRGRGVAWCEDPSNEDDQ 190 Query: 199 FERVRVRR 206 FER++ RR Sbjct: 191 FERIKARR 198 >gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11] gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11] Length = 383 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 21/320 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL LH +D + +VDH LR+ + DE V+ ++L ++H V+ W++ Sbjct: 1 MALLHLLHDCFADVG---VTLCVATVDHGLRDGSHDEAMMVAAEAAKLGLSHDVLEWRDR 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 L AR ARY L++ A+ + ++I HT DDQ ET+ MR R A GLS Sbjct: 58 PEGGNLQDEARNARYGLLTNWARINDLSVIALGHTADDQAETLLMRLGR--ASGVSGLSA 115 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 M D + + RP L R+ +R++L ++ ++W +DPSN D RFER+R+R+ + Sbjct: 116 MPRMRAMD-GVSLMRPLLDVTRDQLRAYLRKKQVAWVDDPSNEDTRFERIRIRQAM--AS 172 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLL 264 L + L +++ + + A L Y + R ++ I + ID + Sbjct: 173 LAPIGLTVERLAAVAQNLGAAREAL-DWYTFLAAREMLEIRDGAIVIDQREFRTLPDEIA 231 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 LL + GG + P M + + G G ++ I R +WI R V+ Sbjct: 232 HRLLVRAVQWVGGAVYPPRRDPMMQAQRTARQG--GSFTLAGCRILTRVQKVWICREVKR 289 Query: 325 LPTLILYPEETTVWDGRYQF 344 + ++ P T WDGR++ Sbjct: 290 VADEVVEPGAT--WDGRWRI 307 >gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N] gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N] Length = 412 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 20/255 (7%) Query: 24 VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL +A + ++ R A++VDH LR A DE R V+ VC+ L + Sbjct: 21 LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 73 PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ M + +W+ RP L RE++R+ L +R SW EDPSN + F+RV Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256 R+R+ + L L L+ ++ D+ +V +A+ + + + L R + ++ + Sbjct: 190 RMRQAME--SLADLGLRPERLADVAGHLAEVRDALDLQLSEAAGRLARVDRGDVVLAPPV 247 Query: 257 LNIDSTLLFYLLRVS 271 L + +L LL+ + Sbjct: 248 LELPPEILRRLLQAA 262 >gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong] gi|166988062|sp|A5CFP2|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong] Length = 441 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 9/189 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG+DS+ L++ + +++ G+I + +++DH LR + E YVS +C +++ Sbjct: 25 IAVSGGTDSLALMLLVKH-WNEKVKGEI--TVLTIDHHLRSESTSEADYVSSICQNIKLQ 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H + W + + A AR+ARY L++ + + + ++T H DD +E ++R R Sbjct: 82 HVTLHWIHKGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHADDIVENFFIRLLR-- 139 Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G GL+G+ I + N+ I RP ++D++ +L Q+NI W DPSN +++ R Sbjct: 140 ---GAGLAGLSSHNIFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNNSNKYLRT 196 Query: 203 RVRRFVRDI 211 +VR ++ + Sbjct: 197 QVRDLLKSM 205 >gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1] gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1] Length = 342 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 12/187 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ PA L+AVSGG DS L+ A G+ F +VDH LR + DE R Sbjct: 19 FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDLFRVATVDHALRPGSADEAR 70 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V + + L + H++++W + + + A+AR ARY L+++HA I A LI+TAHT DDQ Sbjct: 71 AVGRLATELGLIHTILTWDAPRHGSRIQASARGARYRLLTDHAARIGAGLILTAHTLDDQ 130 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR A G GL+GM + + + + RPFL + D+ ++ + + Sbjct: 131 AETVLMRL---IAGSGPSGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187 Query: 191 DPSNTDD 197 DPSNTD+ Sbjct: 188 DPSNTDE 194 >gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1] gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1] Length = 412 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 14/204 (6%) Query: 24 VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL +A + ++ R A++VDH LR A DE R V VC+ L + Sbjct: 21 LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVGRVCADLGV 72 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 73 PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ M + +W+ RP L RE++R+ L +R SW EDPSN + F+RV Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189 Query: 203 RVRRFVRDIDLHALYLKMKKFQDL 226 R+R+ + L L L+ ++ D+ Sbjct: 190 RMRQAME--SLADLGLRPERLADV 211 >gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11] gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11] Length = 459 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 19/337 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGG DS+ LL+A S R++ + + VDH LR + E +V ++ + Sbjct: 34 SKIALAVSGGGDSVCLLLAFCEWRSRRNW-EGACEVVVVDHQLRPESSQEACFVRELSEQ 92 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++ W + KP+TG+ AAR ARY LI++ ++ AH DDQ ET R Sbjct: 93 HGLRCHILKWTDDKPETGVQEAARGARYQLIAKQTAVSGFEAVLLAHHLDDQAETFLDRL 152 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+G + D L + RPFL + + + L +R+ WC+DPSN ++ Sbjct: 153 TRGSGLNGLG-AMASDEPEGPAGLRLLRPFLGVPKSRLLATLEERDQKWCDDPSNKSLKY 211 Query: 200 ERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +R R+R + L ++ + R + +A L +++ H + S Sbjct: 212 KRSRLRSISSTLSEEGLSPSRIATTARQLRRAREALEMVLAELFRQHVEEHPAGPVKTST 271 Query: 255 DILNIDST------LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + S L+ + RV+ G++ P R +E + ++ + G ++G V Sbjct: 272 LVFRAQSEEFRLRLLILMIERVT-----GRVYQPKLRKIEALDHWILNNNAGRQTLGGAV 326 Query: 309 IDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQF 344 ++ + + L++ + + R+ P ++ WD R+ F Sbjct: 327 LEIKRDTLFVWKEIGRSPPEVLENLRGEGNWDARFLF 363 >gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4] gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4] Length = 446 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 25/351 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + VSGG+DS+ LL + +S+ ++VDH LR + E R+VSD+C L+ Sbjct: 37 ITLGVSGGADSLALLFLVVEWKKRQSWSGA-LDVVTVDHGLRAESAKEARFVSDICRSLQ 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H+++ W+ + L AREARYALI+EH + ++ ++ H DDQ ET R R Sbjct: 96 VRHTILEWRPEGALSNLQGRAREARYALIAEHMEESSSEALVLGHHLDDQAETFLDRLTR 155 Query: 142 DYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 GLS M N L I RP L ++ + L R SW ED SN + ++ Sbjct: 156 GSGV--YGLSAMASVEHQGPNGLQIVRPLLSLSKDQLVLSLEARGQSWVEDQSNEVEAYK 213 Query: 201 RVRVRRFVRDIDLH-----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RVR+R+ ++ + L K+ + R + V+ +T H +AI D Sbjct: 214 RVRLRKLLKGLSDEGLSRDGLAETAKRMRRAREALEEWVSSFWSTRVTQHPAGPLAICFD 273 Query: 256 IL-NIDSTLLFYLLRVSAAICGGQ---ISLPGYRSME---RVMLFLKSGKRGCVSIGRVV 308 N+ + +L + + G L ++E + LK GC+ + + V Sbjct: 274 AWQNLPLEMRLRVLSQALSATAGMEYPSRLSKLEALEADLQKQAQLKKTMSGCI-VSKTV 332 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIG 355 R +W +P++ L +WDGR++ L D ++G Sbjct: 333 ---RHLLVWKEVGRSEIPSVGLAKFMNGCRRRIWDGRFEI-TLEDQFGELG 379 >gi|254564206|ref|YP_003071301.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens DM4] gi|254271484|emb|CAX27499.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens DM4] Length = 342 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 12/187 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ PA L+AVSGG DS L+ A G+ +F +VDH LR + DE Sbjct: 19 FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDRFRVATVDHALRPGSADEAL 70 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V + + L + H++++W + + + A+AR ARY L+++HA I LI+TAHT DDQ Sbjct: 71 GVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAGRIGTGLILTAHTLDDQ 130 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR A G GL+GM D + + RPFL + D+ ++ + + Sbjct: 131 AETVLMRL---IAGSGPSGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187 Query: 191 DPSNTDD 197 DPSNTD+ Sbjct: 188 DPSNTDE 194 >gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506] gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506] Length = 342 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 12/193 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A IL+AVSGG DS L++ R G + + +VDH LR A+ E V + +R Sbjct: 30 ARILLAVSGGPDSTALMLLAQRWREGRDAGP-ELAVATVDHGLRAEARTEAEAVGALAAR 88 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + H+++ + P+ L AAR ARY + HA+ I A+ I TAHT DDQ ETV R Sbjct: 89 LSLPHAILDLSSPLPKARLQEAARHARYEALLAHARAIGASAIATAHTLDDQAETVLFRL 148 Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G G+ G+ + L ++ L RP L + + + I + EDPSN Sbjct: 149 MR-----GSGIGGLAGIPSERALAEVELL--RPLLGLPKAHLIEECRRAGIGFAEDPSNR 201 Query: 196 DDRFERVRVRRFV 208 D RF R R+R + Sbjct: 202 DPRFARARLRALL 214 >gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens AM1] gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens AM1] Length = 342 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ A G+ +F +VDH LR + DE V + + L + Sbjct: 28 LLAVSGGPDSTALMHAAARA------GRDRFRVATVDHALRPGSADEALGVGRLATELGL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H++++W + + + A+AR ARY L+++HA I A LI+TAHT DDQ ETV MR Sbjct: 82 VHTILTWDAPRHGSRIQASARGARYRLLTDHAAGIGAGLILTAHTLDDQAETVLMRL--- 138 Query: 143 YAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 A G GL+GM + + + + RPFL + D+ ++ + + DPSNTD+ Sbjct: 139 IAGSGPSGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLRDPSNTDE 194 >gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM] gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM] Length = 396 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGGSDS LL+ L R ++ A++VDH LR A E V+ +C+ L Sbjct: 1 MAVAVSGGSDSTALLLGLKDWAQGR---EVSLYAVTVDHGLRAAAAHEAEAVAQLCAELA 57 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H + W+ Q L AAR ARY L+++ A + + ++ HT +DQ ET+ MR R Sbjct: 58 LPHHCLEWQGWDGQGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQAETLVMRLAR 117 Query: 142 DYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL G+ + + RP L RE +R++L +R+I W +DPSN D ++ Sbjct: 118 -----GAGLDGLAGMGARTARGAMTLHRPLLGVSRESLRAYLRRRDIGWADDPSNEDPQY 172 Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---- 250 RVR R + +++ AL ++ R + + + + ++ Sbjct: 173 ARVRTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQEAAERLVQFDAGDLVIDAQ 232 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY----RSMERVMLFLKSGK----RGCV 302 A ++ +I +L LR +S GY ++E ++ L+ + GC Sbjct: 233 AWGEERRDIQRRILQAALR--------WVSGHGYPARGAAVEALLEALQREEAMTLHGCR 284 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 +I R +++ ITR + L P T+WDGR+Q Sbjct: 285 NI------PRRDYIRITREWAAVADLEACP--GTLWDGRWQVSG 320 >gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10] gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10] Length = 450 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 14/212 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISV 58 M +++VR + L + +A SGG DS+ LL+ + SD R+ G+ ++V Sbjct: 1 MVARAVQTVRSALGRLAGEGPLGIACSGGGDSLALLV----IASDWARANGR-SLQVLTV 55 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR+++ DE +V+ + RL + ++W +++P GL A AR+AR+ L++ + + Sbjct: 56 DHGLRKSSADEANHVAAMADRLGWPCTCLTWDDARPGAGLQARARDARHRLLARACRDLG 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILY----DLNLWISRPFLRCR 173 T + AHT DDQ ETV++R + + +S + ++ DL+L RP L Sbjct: 116 LTELALAHTRDDQSETVWLRLAAGGSWRSAAVMSDRAPSPVWPEGRDLDL--LRPCLDVT 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R ++R L I W +DPSN DDR+ RVR R Sbjct: 174 RAELRRVLSDAGIDWVDDPSNEDDRYARVRAR 205 >gi|114771183|ref|ZP_01448603.1| PP-loop family protein [alpha proteobacterium HTCC2255] gi|114548108|gb|EAU50995.1| PP-loop family protein [alpha proteobacterium HTCC2255] Length = 423 Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 6/186 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +I ++VSGG DS+ LL L + ++ KI F A +VDH LR+ + +E + V D+C L Sbjct: 28 NIGLSVSGGGDSIALLY-LTKEWACKNDKKI-FVA-TVDHGLRKESLNEAQTVKDICRSL 84 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++++W + L AAR AR LI A ++ + T HT DDQ ET +R Sbjct: 85 GIECTILNWTDWDKSGNLQDAARSARNRLIGNWANSLGLDAVATGHTADDQAETFLLRLA 144 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLSGM +IL + LW RP L R ++R +L I+W +DPSN + +F+ Sbjct: 145 RGSGVD--GLSGMASSILKEGMLWF-RPLLEFHRSELRDYLNINKITWFDDPSNENMKFD 201 Query: 201 RVRVRR 206 RV++R+ Sbjct: 202 RVKMRK 207 >gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 329 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 18/192 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGGSDS+ LL L +SD A++VDH +R A +E R+V+ +C ++ + Sbjct: 34 IAVSGGSDSLALL--LLGAVSD-----FPVEAVTVDHGMRPEAAEEARFVAQICQQIGVP 86 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +++ K G+ AAAR RYAL++E AK N +MTAH DDQ ET MR+ R Sbjct: 87 HQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRAAR-- 144 Query: 144 AEKGMGLSGMC----DTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G GL+G+ D ++ L + RP L R + + + ++ DPSN + Sbjct: 145 ---GSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVKKAGFTFVSDPSNDNP 201 Query: 198 RFERVRVRRFVR 209 ++R RR ++ Sbjct: 202 HYDRTHFRRLLK 213 >gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36] gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36] Length = 419 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 15/337 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGG DS+ LL L+ R I A +VDH LR A E V+ C Sbjct: 18 PPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAAQCR 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + W L AR+ARY L+++ A+ + HT DD ET MR Sbjct: 75 ALGVPHDTLRWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETFVMR 134 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GLS M I + RP L RR D+R+ L + ++W +DPSN DD Sbjct: 135 LGRRAGVD--GLSAM-PAIFDRHGMRWHRPLLNVRRADLRAHLTRCGVTWVDDPSNEDDS 191 Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 F RVR+R+ + +D AL + D R ++ + + V ++ Sbjct: 192 FARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQYGAVAMDW 251 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 Q + + + LL + A G P ++ V+ L G ++ + + Sbjct: 252 QALCGLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTALDDA--GAATVQGCELRLKR 309 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350 + LWI R ++ + + P + +WDGR++ + D+ Sbjct: 310 DKLWIYRELQAV-RAVAAPAD-ALWDGRWRLEPCGDA 344 >gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762204|ref|ZP_04760286.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|61217187|sp|Q5NLX8|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373251|gb|EER62870.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 329 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 18/192 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGGSDS+ LL L +SD A++VDH +R A +E R+V+ +C ++ + Sbjct: 34 IAVSGGSDSLALL--LLGAVSD-----FPVEAVTVDHGMRPEAAEEARFVAQICQQIGVP 86 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +++ K G+ AAAR RYAL++E AK N +MTAH DDQ ET MR+ R Sbjct: 87 HQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRAAR-- 144 Query: 144 AEKGMGLSGMC----DTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G GL+G+ D ++ L + RP L R + + + ++ DPSN + Sbjct: 145 ---GSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVEKAGFTFVSDPSNDNP 201 Query: 198 RFERVRVRRFVR 209 ++R RR ++ Sbjct: 202 HYDRTHFRRLLK 213 >gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str. Gardel] gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 442 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 30/384 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL LS K + ++V+H LR A E +V L + Sbjct: 28 IAVSGGIDSMVLL-----HLSAICNTKFTPTILTVNHGLRSEAAQEALFVYQHSQNLNLK 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +++W KPQ+ + ++AR+ RY+L+ + +M AH +DQ ET+ MR Sbjct: 83 CHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQKNDQAETIMMR----- 137 Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G GL G+ Y + I RP L RE++ + +NI+W D SN + +++R Sbjct: 138 LERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKR 197 Query: 202 VRVRRFVRDID--------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R ++++D L+ + +K+ D + + V + I ++L + I I Sbjct: 198 TLYRNILKEVDNTEELVNRLYKTSVHIKRSLDC---ILHYVRLAIDEHLEFNNLGFIKIK 254 Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSIGRVVI 309 N+ + L S G + P Y + + +++ K ++ Sbjct: 255 LNTFFNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITR 314 Query: 310 DRRANFLWITRAVR--NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367 +++ N L ITR V N T+ Y + + VWD R++ + + + I S +P Sbjct: 315 NQKDNTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPEN 374 Query: 368 IPPIIAQRALSSMPSKEGGKPLLA 391 + + + A+ +P + +LA Sbjct: 375 LKK-LDREAVRCLPILKYQNKILA 397 >gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2] gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2] Length = 368 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 103/204 (50%), Gaps = 6/204 (2%) Query: 4 SPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 SPIE + H IL+AVSGG DS LL + R+ G A +VDH Sbjct: 12 SPIEDGALDALFAPFTPHPRILIAVSGGPDSTALLYLAARWRAGRASGP-DLIAATVDHG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR A E V + L + H ++ W+ +KP G+ AAREARY L+++ A+ AT Sbjct: 71 LRAEAAAEAEAVGAFATFLGVPHRILIWQGAKPTHGIQEAAREARYDLLADAAREAGATA 130 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AHT DDQ ETV R R GLSGM D L + RP L + + + L Sbjct: 131 IALAHTRDDQAETVLFRLARGSGLS--GLSGMRGDAARD-GLALLRPLLDVPKARLVATL 187 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 ++++ DPSN+D RF R R+R Sbjct: 188 EAASVAFVRDPSNSDPRFARPRLR 211 >gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1] gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1] Length = 341 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 5/206 (2%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA I++AVSGG DS+ L+ + G S ++VDH L Sbjct: 9 VSATEARGLFGDWKAAPA-IVLAVSGGPDSLALMWLVARWRKALKRGP-SLSVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + + L + H + W+ KP +G+ AAAR+ARY L++E A+ AT I Sbjct: 67 RAEAAREARAVKRLATSLDLPHRTLRWRGDKPASGIQAAARQARYRLLAEAARRAGATHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M D ++ + RP L + + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGIA--GLAAMSRQTARD-DIVLVRPLLDVPKARLLATLA 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 + I + DPSN D RF R R+R + Sbjct: 184 KARIDFATDPSNADPRFARPRLRELM 209 >gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str. Welgevonden] gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str. Welgevonden] gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 442 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 30/384 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL LS K + ++V+H LR A E +V L + Sbjct: 28 IAVSGGIDSMVLL-----HLSAICNTKFTPTILTVNHGLRSEAAQEALFVYQHSQNLNLK 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +++W KPQ+ + ++AR+ RY+L+ + +M AH +DQ ET+ MR Sbjct: 83 CHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQKNDQAETIMMR----- 137 Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G GL G+ Y + I RP L RE++ + +NI+W D SN + +++R Sbjct: 138 LERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKR 197 Query: 202 VRVRRFVRDID--------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R ++++D L+ + +K+ D + + V + I ++L + I I Sbjct: 198 TLYRNILKEVDNTEELVNRLYKTSVHIKRSLDC---ILHYVRLAIDEHLEFNNLGFIKIK 254 Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSIGRVVI 309 N+ + L S G + P Y + + +++ K ++ Sbjct: 255 LNTFFNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITR 314 Query: 310 DRRANFLWITRAVR--NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367 +++ N L ITR V N T+ Y + + VWD R++ + + + I S +P Sbjct: 315 NQKDNTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPEN 374 Query: 368 IPPIIAQRALSSMPSKEGGKPLLA 391 + + + A+ +P + +LA Sbjct: 375 LKK-LDREAVRCLPILKYQNKILA 397 >gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB18] gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB18] Length = 346 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 16/193 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISVDHCLRETAKDEVRYVSDVC 77 +++AVSGG DS+ L+ L+ R ++ S I+VDH LR A E R V Sbjct: 27 VVLAVSGGPDSLALMW-----LAARWRKALRRGPAISVITVDHGLRPEAAREARDVKRHA 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L + H + W+ KP TG+ AAAREARY L++ A+ A+ +MTAHT DDQ ET+ M Sbjct: 82 AELDLPHRTLRWRGDKPSTGVPAAAREARYQLLARAARAAGASHVMTAHTRDDQAETLLM 141 Query: 138 RSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G G++G+ + I+RP L + + + L + I + DPSNT Sbjct: 142 RMSR-----GSGIAGLAAMARQTERFGVIIARPLLEVSKAQLVATLDKAKIGFATDPSNT 196 Query: 196 DDRFERVRVRRFV 208 D R+ R R+R + Sbjct: 197 DPRYARPRLRGLI 209 >gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53] gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53] Length = 392 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 10/195 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F + L + +AVSGG DS+ LL L + + R S SVDH LR + E Sbjct: 6 FAQLLQGGTPVGLAVSGGGDSIALL-HLAAAIGGR------ISVASVDHGLRPESAAECG 58 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V+D+C+ + H + W + L AR ARY L+++ A+ I HT DDQ Sbjct: 59 MVADICTSYGLPHQTLKWTGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADDQ 118 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ M R GL+GM + D L RP L+ R +R++L+ WC+D Sbjct: 119 AETIVMALARGAGVG--GLAGMAAVMSRD-GLHYHRPLLQVTRVALRAYLVATGRVWCDD 175 Query: 192 PSNTDDRFERVRVRR 206 PSN D +ER+R+R+ Sbjct: 176 PSNDDPAYERIRIRQ 190 >gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum CM4] gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum CM4] Length = 347 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 12/187 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ PA L+AVSGG DS L+ A G+ +VDH LR + DE Sbjct: 19 FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDLLHVATVDHALRPGSADEAL 70 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V + + L + H++++W + + + A+AR ARY L+++HA I A LI+TAHT DDQ Sbjct: 71 GVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAARIGAGLILTAHTLDDQ 130 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR A G GL+GM D + + RPFL + D+ ++ + + Sbjct: 131 AETVLMRL---IAGSGPSGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187 Query: 191 DPSNTDD 197 DPSNTD+ Sbjct: 188 DPSNTDE 194 >gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2] gi|75537001|sp|Q4UN67|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2] Length = 430 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 90/339 (26%), Positives = 163/339 (48%), Gaps = 31/339 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I AVSGGSDS+ LL L ++ ++++ I+ S ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKIAAAVSGGSDSVALL-YLANIWAEKN--NIELSVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR-------FVR-DIDLHALYLKMKKFQDLRVK------VNNAVAMLIPKYLTVH 245 R +R+ +++ DI L LK+ D + K + AV + + + Sbjct: 193 RRNIIRQKLAKGEDYIKADIILQQ--LKINDLLDNKFKPELISAIAEAVKIFEYGFAFLD 250 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + S + + ++ +LL I GQ + S+E ++ + ++ Sbjct: 251 LVKFDKFSNE---VKVQIINFLL----IIISGQFRAARFYSVEPILKLITQDVNFKNTLH 303 Query: 306 RVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343 VI+R N L I R + LP + +++ +WD R++ Sbjct: 304 GCVINRIQNELLIYREFGKKLPESKILLDKSVIWDNRFR 342 >gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Stappia aggregata IAM 12614] gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Stappia aggregata IAM 12614] Length = 461 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 162/374 (43%), Gaps = 32/374 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +AVSGGSDS+ LL+ L R+ + + VDH LR + E +V+ Sbjct: 34 SNLALAVSGGSDSLCLLV-LFDEWRKRTGWQGAAEVLCVDHQLRPESGQEAEFVAMNARA 92 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +V+ W KP + AR ARY L++ + A ++ H DDQ ET R Sbjct: 93 CGLDCTVLRWSGDKPSANVQEEARLARYRLMAGRMRDTEAEALVLGHHLDDQAETFLDRL 152 Query: 140 QRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GLSGM D L + RP L + D+ + L QR WC DPSN + + Sbjct: 153 TRGSGVS--GLSGMAADEGCGPEGLRLLRPLLSVSKSDLIAALEQRGRPWCTDPSNRNPK 210 Query: 199 FERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++R R+R + + L + R + V L + +T H + + Sbjct: 211 YKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTVEDLAARLVTEHPAGPVRLD 270 Query: 254 QDILNIDST-----LLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + + LL YLL RVS G++S P ++ + L SG + + Sbjct: 271 RYAYRTLAEEFRLRLLVYLLARVS-----GKVSRPRLAKLQALDRVLISGVQNRQTFQGS 325 Query: 308 VIDRRANFLWITR-AVRNLPTLILYPEETTVWDGRYQFQ------NLSDSLIQIG----- 355 V D A+ + + + A R PT++ T WDGRY ++ D+ + +G Sbjct: 326 VFDADADTIRVWKEAGRTPPTVVTGLAGTGTWDGRYLYRAPERVTGEGDAPLCLGPLTSA 385 Query: 356 PQSYRKADVPSGIP 369 P S R+ D P G P Sbjct: 386 PVSRREIDWPEGWP 399 >gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like [Jannaschia sp. CCS1] gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1] Length = 422 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 168/371 (45%), Gaps = 33/371 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I +AVSGG DSM +L H R +G + ++VDH LR ++ E V+ C Sbjct: 21 FPSDIALAVSGGGDSMAMLTLAHGWA--RVYG-VGLHVVTVDHGLRSASRQEAEMVAKEC 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W+ Q L AAR AR +LI I L AHT DDQ ET+ M Sbjct: 78 AVLGHPHTTLKWQWDN-QGNLQDAARRARLSLIGAWRGQIAHVLF--AHTRDDQAETMLM 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G LS M +T D++ W + RP L R D+R + + + +DPSN D Sbjct: 135 RLLRGSGVDG--LSAMAET--RDMDGWQVIRPLLSETRADLRHYADVLRVPYVDDPSNED 190 Query: 197 DRFERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + F+RVR+R ++ +D AL + R + A A+ + + R + Sbjct: 191 ETFDRVRLRGTIKALGMDTRALANTAARMGRARTAL-EARAVDVARACVTEDRWEWMPTG 249 Query: 255 DILNIDSTLLFYL-----LRVSAAICGGQISLPGYR----SMERVMLFLKSGKRGCVSIG 305 D+L ID + LRV A ++ YR +E ++ SG G + Sbjct: 250 DLL-IDRDRFAEVEPDTQLRVLAGAL-QWVTTADYRPRAAPLEDLLDRALSGGGGTLHGA 307 Query: 306 RVVIDRRANFLWITRAVRNLP-TLILYPEETTVWDGRYQ-FQNLSDS---LIQIGPQSYR 360 R I R + ++R + T + E +WD R+Q F S + +GP ++ Sbjct: 308 RTTI--RGAHIRVSREFDAIEGTEVALGSEAVIWDTRWQVFSTDVPSGRRVRALGPDGWQ 365 Query: 361 KA-DVPSGIPP 370 +A D P PP Sbjct: 366 QATDKPDHPPP 376 >gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14] gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter hamburgensis X14] Length = 345 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 99/187 (52%), Gaps = 5/187 (2%) Query: 20 AHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 AH LV VSGG DS L+ + G A++VDH LR + E R V + + Sbjct: 24 AHALVLGVSGGPDSTALMWLAARWRRAMTRGP-DLIAVTVDHGLRPGSAREARDVKHLAT 82 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H V W +KP++GL AAAR+ARY L+++ A+ A + TAHT DDQ ETV MR Sbjct: 83 SLGMRHRTVRWSGAKPKSGLPAAARDARYRLLAKTARANGALHVFTAHTRDDQAETVLMR 142 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GLS M + D ++RP L + + + L + I++ EDP+N D Sbjct: 143 ISRGSGI--TGLSAMARETMRD-GFILARPLLHVSKSRLIATLEKAGIAYAEDPTNRDVS 199 Query: 199 FERVRVR 205 F R R+R Sbjct: 200 FTRPRLR 206 >gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake] gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake] Length = 433 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 22/333 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGG DSM LL H R+ ++V+H LR+ AK E +V L + Sbjct: 21 VAVSGGIDSMVLL---HLSAQHRNHNTPII--LTVNHGLRQEAKQEALFVFQHSQNLNLK 75 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +++W P++ + ++AR+ RY L+ + +M AH +DQ ET+ +R Sbjct: 76 CHILNWHGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQAETIMIR----- 130 Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G GL G+ Y + I RP L R ++ + Q NI W DPSN + +++R Sbjct: 131 LERGSGLDGLAGMQECTYLNGICILRPLLSVSRTELLQYASQNNIPWINDPSNNNKKYKR 190 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R + D ++ LY + + + V I + L I I D+ Sbjct: 191 TLYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVREAIDECLEFTNLGYINIKLDV 250 Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313 LN+ + LL S G Q P Y+ + ++ +++ + ++ + Sbjct: 251 FLNLPEEISLRLLTYSIMTIGQQKYKPRYKKINKIFYKIQNNELNSAQTLCSCKIVKNQN 310 Query: 314 NFLWITRAVRNLPTLIL-YPEETT-VWDGRYQF 344 N + I R V + LI+ YP T+ +WD R++ Sbjct: 311 NTISIIREVSTIKELIVNYPTNTSIIWDNRFKI 343 >gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278] gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278] Length = 367 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 10/194 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 SL +++AVSGG DSM LL L+D + AI+VDH LR A+ E Sbjct: 29 SLADAPALVLAVSGGPDSMALLWLAARWRQALAD----GPRLVAITVDHGLRPEARREAA 84 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V +L ++H ++ W KP TG+ AAR ARY L++ A+ A+ ++TAHT DDQ Sbjct: 85 MVKRFARQLEVSHRMLRWTEPKPTTGIPEAARLARYRLLARAARQAGASHVLTAHTRDDQ 144 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV MR R +GL+ M D L ++RP L + + + L I + +D Sbjct: 145 AETVLMRLLRGSGI--VGLAAMAPVSARD-GLLLARPLLEISKARLVATLRSAGIEFADD 201 Query: 192 PSNTDDRFERVRVR 205 P+N D + R R+R Sbjct: 202 PTNHDPAYTRPRLR 215 >gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2] gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2] Length = 347 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 17/209 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISV 58 +S E+ F PA +L AVSGG DS+ LL L+ R +K A++V Sbjct: 11 ISAQEARHLFAGWKRIPALVL-AVSGGPDSVALLW-----LAARWRKSLKNGPDLLAVTV 64 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR A E R V + S L I H ++SW+ KP+TG+ AAR+ARY L++ A++ + Sbjct: 65 DHGLRAAAAHEARNVKRLASSLGITHRILSWRGPKPKTGVPRAARDARYELLARAARSAS 124 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRRED 176 A I+TAHT DDQ ETV MR R G G++G+ + + RPFL + Sbjct: 125 AVAIVTAHTQDDQAETVLMRLSR-----GSGITGLAGMAMQTERHGVGLLRPFLEIPKAR 179 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + + L + + + +DP+N D + R R+R Sbjct: 180 LVATLDRAKVVYADDPTNHDPAYTRSRLR 208 >gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110] gi|61216753|sp|Q9XBG6|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum] gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 10/206 (4%) Query: 4 SPI---ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVD 59 SPI E+ + F PA +L AVSGG DS+ L+ + RS + + + ++VD Sbjct: 7 SPISAREAKQLFAELKSAPALVL-AVSGGPDSIALM--WLAARWQRSLARGPRLTVVTVD 63 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H LR A E R V + + L + H + W+ +KP+TGL AAAREARY L+ + A++ A Sbjct: 64 HGLRAEAAREAREVKRLATELGLPHRTLRWRGAKPKTGLPAAAREARYRLLMQAARSAGA 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + ++TAHT DDQ ET+ MR R GLS M D + ++RP L + + + Sbjct: 124 SHVLTAHTRDDQAETLLMRLVRGSGL--AGLSAMARLTERD-GIVLARPLLDVPKAQLIA 180 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 L + I + +DP+N D F R R+R Sbjct: 181 TLKRAKIGFADDPTNRDTAFTRPRLR 206 >gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3] gi|61216401|sp|Q5LNU7|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3] Length = 419 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 10/190 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDV 76 P + VAVSGG DS +AL +L+ R F G++K +VDH LR + E V+ Sbjct: 23 PRRLGVAVSGGGDS----VALMHLLA-RCFPRGEVKLCVATVDHGLRSESASEAALVARQ 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + L + H + W + L AR ARY L+++ A T + AHT DDQ ET+ Sbjct: 78 AAGLGLPHETLLWTGWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAHTADDQAETLL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R GL+ M + D + + RP L R+ +R FL I+W EDPSN D Sbjct: 138 MRLGRSAGVS--GLAAMAPRRMQD-GVVLVRPLLGITRDALRDFLRAEGIAWAEDPSNED 194 Query: 197 DRFERVRVRR 206 R++R++ R+ Sbjct: 195 IRYDRIKARQ 204 >gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17] gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17] Length = 330 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 13/192 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA +L+AVSGG DSM +L+ + R + +VDH LR A +E+R V++ C Sbjct: 28 PAPLLLAVSGGPDSMAMLMLAAAAFPGR------IAVATVDHGLRPEAAEELRMVAEHCR 81 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + L A AREARYAL+++ A+ I A I+TAH DDQ ET MR Sbjct: 82 ILGVPHHGLRPATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQAETFLMR 141 Query: 139 SQRDYAEKGMGLSGMCDT-ILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GLSG+ + ++N + + RP L RR ++R + + + +DP+N D Sbjct: 142 AAR-----GAGLSGLSGVRVRTEINGVPVLRPLLDWRRAELRQIVRRAEAPFVDDPANHD 196 Query: 197 DRFERVRVRRFV 208 R +R R R+ + Sbjct: 197 PRHDRTRFRQLL 208 >gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str. McKiel] gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str. McKiel] Length = 432 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 23/333 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VAVSGGSDS+ LL L +V + ++ I+ ISVDH LRE +K E Y+ ++ + L Sbjct: 24 IAVAVSGGSDSVALL-YLTNVWAKKN--NIELFVISVDHNLREQSKQETHYIQNISNSLN 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H +S+ + + L ARE RY L++ ++ ++TAH DD +E +R +R Sbjct: 81 RKHYNLSFDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRLER 140 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + G+ S I + N+ I RP + ++ +L+ NI W ED SN D+++R Sbjct: 141 NSGIFGLSSSN----INWHNNIQIIRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKYKR 196 Query: 202 VRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ------ 254 VR + ++ D Y+K ++K+NN + L + + I + Sbjct: 197 NLVRQKLAKEED----YIKADIILQ-QLKINNLLDDKFKPELISAIAEAVKIFEYGFAFL 251 Query: 255 DILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 D++ D + + L+ I GQ + + S+ ++ + ++ VI R Sbjct: 252 DLVKFDKFSNEVKVQLINFLLIIISGQSRVARFYSVSPILELITQDINFKNTLHGCVIKR 311 Query: 312 RANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343 N L I R + LP + +++ +WD R+ Sbjct: 312 IQNELLIYREFGKKLPKSQILLDKSIIWDSRFH 344 >gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025] gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 412 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 159/345 (46%), Gaps = 33/345 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL I A++VDH LR A E V VC+RL + Sbjct: 21 LAVSGGGDSMALLHLAAEA-------GIAARAVTVDHGLRPEAAAEALEVGRVCTRLGVP 73 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H ++ W+ + LM AR AR LISE A+ + HT DD ET MR R Sbjct: 74 HDILRWEGWDGRGNLMDQARRARLRLISEWARGAGLDAVALGHTRDDVAETFLMRLARGA 133 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 GL+ M + LW+ RP L RE++R L +R +W EDPSN + F+RVR Sbjct: 134 GVD--GLAAMRAERRAEGMLWL-RPLLGIGREELREELRRRGAAWFEDPSNENRAFDRVR 190 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML------IPKYLTVHMRSIIAISQDIL 257 VR+ ++ L L L ++ ++ + A L + L R + ++ +L Sbjct: 191 VRQAMQ--GLAGLGLGPERLAEVAGHLAEVRAALDAQLHEAARTLVRVDRGDVLMAPGVL 248 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR---RAN 314 ++ +L LLR + P ++ R+M L+ GK + R+V R R Sbjct: 249 DLPDEILRRLLRGAVQWVASAEYGPRGPALARLMRDLRQGKGRTLHGCRLVWRRDGLRIG 308 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQ-----NLSDSLIQI 354 W +AVR+L + +WDGR++ Q ++SD ++I Sbjct: 309 REW--QAVRDLTAPV-----GALWDGRWRLQGPPQEDISDQPLEI 346 >gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 400 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 5/198 (2%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +SP V F R L + +L+AVSGG DS+ L++ L + ++ + S SVDH Sbjct: 66 LISPATLVDLF-RPLEHARKVLLAVSGGPDSVALML-LAAQWAEAVWKAPPLSVASVDHG 123 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E V++ +RL + H ++ W+ KP+T L AR+ARY L+ HA+TI A Sbjct: 124 LRPDSLAEAEQVAEWAARLGLPHHILRWEGEKPKTRLQERARDARYGLLIAHAETIGADY 183 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ET+ R R + GL GM +++ L +RP L + ++ + Sbjct: 184 LVTAHHADDQAETILFRLLRGSGPR--GLKGM-ESLFQRGELLHARPLLGMTKAELLAIC 240 Query: 182 LQRNISWCEDPSNTDDRF 199 + DPSN D RF Sbjct: 241 DTCRHPFFTDPSNLDVRF 258 >gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2] gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2] Length = 424 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 107/206 (51%), Gaps = 19/206 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I ++VSGG DS+ L+ L+ R + ++VDH LR A+ E+ V+ + L Sbjct: 29 IGLSVSGGGDSIALMH-----LAARLRDPKRLRVLTVDHGLRPEAQQEIALVASQAADLN 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H+V+ W Q L AAAR R+A +S A N + HT DDQ+ETV MR R Sbjct: 84 IDHAVMPWTWDG-QGNLQAAARARRWAAVSAWAAMHNMREVWLGHTEDDQVETVLMRLAR 142 Query: 142 DYAEKGMGLSGMCDTILYDL----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G+ G+ T +Y L +L I RP L C R D+R +L I WCEDPSN D Sbjct: 143 -----GSGIDGL--TAMYPLSERDDLRILRPLLGCARADLRHWLQSNKIPWCEDPSNDDP 195 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKF 223 RF+RVR R+ L L L K+ Sbjct: 196 RFDRVRARQMF--AQLEGLGLTRKRL 219 >gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150] gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150] Length = 419 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 99/188 (52%), Gaps = 6/188 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGGSDSM LL+ ++ + G + + ++VDH LR A+ E V D CS L + Sbjct: 28 VAVSGGSDSMALLVLANAWAIEN--GHVLY-VVTVDHQLRPDARVEAETVGDFCSTLGLP 84 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H V++W + AR ARY L+ AK++ + HT DDQ ET+ M R Sbjct: 85 HQVLTWNGWVGRGNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQAETLLMSIARKS 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 GLS M + +L + RP L R D+R L + +ISW +DPSN D ER++ Sbjct: 145 GVD--GLSAMRARRAHG-DLVLMRPLLGFARGDLRQILTEGDISWADDPSNDDITSERIK 201 Query: 204 VRRFVRDI 211 +R + D+ Sbjct: 202 MRHLLTDM 209 >gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 7/178 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A L+AVSGG DS L+ H + + ++ + ++DH LR + E R V + Sbjct: 25 ATALLAVSGGPDSTALM---HVAVRAGTGAHLRVA--TIDHGLRPGSAGEARAVGHLAGE 79 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + H++++W++ + + + AR+ARY L+++HA ++ A L++TAHT DDQ ETV MR Sbjct: 80 MGLTHAILAWESPRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQAETVLMRL 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 GL+GM + ++RPFL + D+ ++ + + DPSNTD+ Sbjct: 140 M--AGSGPAGLAGMRHERPLAPGIRLARPFLAVPKADLVAYCEAHRLPFVRDPSNTDE 195 >gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1] gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1] Length = 419 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 25/213 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISV 58 M LS +E R R + L VAVSGG DSMGLL + L S L +AI + Sbjct: 1 MTLSAVEKFRAAARRDGWLGQPLAVAVSGGGDSMGLLWLCLASGLR-------PCAAIHL 53 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTG--LMAAAREARYALISE 112 DH LR ++ DE R+V + C RL + WK S+ G + A R RYA + E Sbjct: 54 DHGLRPSSADERRFVEETCGRLGLP---FFWKRIDAASRRLQGESVEVACRRERYAFLRE 110 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A++ A+++ AHT DDQ ETV M R G GL G+ I +W+ RP L Sbjct: 111 AAQSAGASVVALAHTADDQAETVLMNICR-----GCGLWGLA-GIPRRRGMWV-RPVLDF 163 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RR+++R L +W ED SN+D R+ R RVR Sbjct: 164 RRDELRDLLKDAGWTWVEDESNSDRRYTRNRVR 196 >gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035] gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035] Length = 418 Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 159/368 (43%), Gaps = 37/368 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDS+ LL LH G +A++VDH LR T+ E V+ +C+ Sbjct: 21 PTRLGVAVSGGSDSLALLHLLHGW---SLVGGPTPAAVTVDHGLRPTSAQEAVDVAQICA 77 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RL I H V W+ L AR ARYAL+++ A+ + I HT DD ET MR Sbjct: 78 RLAIPHDTVRWQGWDGSGNLPDHARRARYALLTDWARANDLHDIAIGHTQDDVAETFLMR 137 Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G+ G+ + RP L RE +R L + SW +DP+N D Sbjct: 138 LAR-----GAGVDGLAAMRPRWTQSGVTFHRPLLDLSREALRDHLRRLGQSWIDDPTNDD 192 Query: 197 DRFERVRVRR---FVRDIDLHALYLK--MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 + R R R+ + + L A L + +R +++A L V I+ Sbjct: 193 TTYLRPRARQSLMALAPMGLGAATLADVARTLSGVRTALDHATLTAARALLQVQSGDILI 252 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVI 309 ++ + L++ G+ P ++ F+K+ + G G +++ Sbjct: 253 DHPGFNDLPEEIARRLMQAMLQWLAGEEYPPRGTALAS---FIKAARDGHTMPLHGCLLL 309 Query: 310 DRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI---GPQS----- 358 + L +TR AV+ L + T+WD R+Q + ++I GP Sbjct: 310 PPKNGQLRLTREYAAVKGLRAPV-----NTLWDNRWQASGPASPGVEIAALGPNGLQACP 364 Query: 359 -YRKADVP 365 +R++ +P Sbjct: 365 DWRQSGLP 372 >gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford] gi|166988063|sp|A8GLX9|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford] Length = 430 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 21/333 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I VAVSGGSDS+ LL L ++ ++++ I+ S ISVDH LRE +K E YV ++ + Sbjct: 20 SKIAVAVSGGSDSVALL-YLANIWAEKN--NIELSVISVDHNLREQSKQETYYVQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L AR RY L++ + +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 R +R + + A Y+K + ++K+N+ + L + + I + Sbjct: 193 RRNIIR---QKLAKGAGYIKAEIILQ-QLKINDLLDNKFKPELISAIAEAVKIFEYGFAF 248 Query: 255 -DILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 D++ D + + ++ I GQ + S+E ++ + ++ V+ Sbjct: 249 LDLVKFDKFSNEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGCVVK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRY 342 R N L I R + LP + +++ +WD R+ Sbjct: 309 RIQNELLIYREFGKKLPESKILLDKSIIWDNRF 341 >gi|328542547|ref|YP_004302656.1| ATPase of the PP-loop superfamily implicated in cell cycle control [polymorphum gilvum SL003B-26A1] gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Polymorphum gilvum SL003B-26A1] Length = 442 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 22/335 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG+DS+ LL L + R+ + +VDH LR A+ E +V +C+ Sbjct: 31 LAIAVSGGADSLALL-HLFADWQRRTARAPQAHVFTVDHGLRAEARAEAEHVHRLCAGYC 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H +++W K L A AREARY LI + ++ + + AH DDQ ET R R Sbjct: 90 LPHEILTWAGRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDDQAETFLDRLTR 149 Query: 142 DYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G+ G+ D + + I RP L + + + L +SW EDPSNTD Sbjct: 150 -----GSGVYGLAAMAADEADGPVGVRILRPLLDVPKARLIATLEAAGLSWFEDPSNTDL 204 Query: 198 RFE-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SII 250 R++ R+ + +D L + + ++ L+ + VH + I Sbjct: 205 RYKRARLRRLGLLLAEEGLDQARLAATAARLRRAADALDGWAERLVRDHCRVHPAGPAEI 264 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 A++ + L L R+ A GG P ++E L +G+ ++G VV+ Sbjct: 265 AVAPLAEAPEEVRLRSLSRLIRA-TGGAEHGPRLEALEPATAALLAGEAASRTLGGVVLR 323 Query: 311 RRANF--LWITRAVRNLPT-LILYPEETTVWDGRY 342 R LW R R P L L P E +WDGRY Sbjct: 324 RSGPVLRLWRERG-RTWPAPLDLAPGEDGIWDGRY 357 >gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001] gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001] Length = 342 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 10/176 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ A + RS G+ +VDH LR + +E V + +RL + Sbjct: 28 LLAVSGGPDSTALMHA-----AARS-GRAGLRVATVDHALRPDSAEEAAEVGRLAARLGL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H+ ++W + + + A AR ARY L+++HA I A L++TAHT DDQ ETV MR Sbjct: 82 PHATLTWDVPRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQAETVLMRL--- 138 Query: 143 YAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 A G GL+GM + + RPFL + D+ ++ + + DPSN D+ Sbjct: 139 IAGSGPSGLAGMPVERPLAPGIRLVRPFLDLPKADLVAYCEAHRLPFLRDPSNADE 194 >gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisA53] gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53] Length = 343 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 16/193 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRETAKDEVRYVSDVC 77 I++AVSGG DS+ L+ VL+ R +K A+++DH LRE + E R V + Sbjct: 27 IVLAVSGGPDSLALM-----VLAARWRAALKRGPELIAVTIDHGLREASAREARDVKKLA 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H + W+ KP +G+ AAAR ARYAL+++ A++ AT I TAHT DDQ ETV M Sbjct: 82 GNLGLPHKTLRWRGDKPTSGIPAAARAARYALLAKAARSTGATHIFTAHTRDDQAETVLM 141 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G GL+G+ L ++RP L + + + L + I + DPSN+ Sbjct: 142 RLSR-----GSGLAGLAAMARQSERCGLQLARPLLGIAKSQLIATLAKARIEFAVDPSNS 196 Query: 196 DDRFERVRVRRFV 208 D RF R R+RR + Sbjct: 197 DPRFTRPRLRRLM 209 >gi|329848733|ref|ZP_08263761.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19] gi|328843796|gb|EGF93365.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19] Length = 410 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 18/324 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VAVSGG DS+ LL L +G+ VDH L+ + V+ L+ Sbjct: 22 IGVAVSGGGDSVALLYQL------ADWGRRPLHVFHVDHALQADSGLWADAVAAHAKHLK 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + ++W KP TG+ AAAR AR+AL++E A+ ++ AHT DD E YMR Sbjct: 76 LSFTRLTWSGDKPTTGISAAARGARHALLAEAARAAGIKVVCLAHTCDDVAEAAYMRQHG 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 S + +++ RP L RR D+R +L+ R +SW +DP+N + + R Sbjct: 136 SNVGTPQTWS-PSPVWPHGRGVFLCRPLLSARRADLRQYLMDRKLSWIDDPANENAKSLR 194 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NID 260 V+ R+ + L L V L+ ++ D + Sbjct: 195 VQARQAL-------LGLTSAPLPPPVRLPRGEVETLLHDPEGWSALGLLRFKADAFYQLP 247 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + +LL +A GG LP +E + L G+ ++ R I + F+ + R Sbjct: 248 NDTALHLLATAAVCAGGGDRLPRRHKVETLYESLADGRSHTLAGAR--IRQAGGFIHVLR 305 Query: 321 AVRNLPTLILYPEETTVWDGRYQF 344 ++ P + +WDGR+Q Sbjct: 306 EAGDI-GRNAEPGQGDLWDGRFQL 328 >gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307] gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307] Length = 430 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I VAVSGG DSM LL H + + + A++VDH LR A DE V+ C Sbjct: 30 PKKIGVAVSGGGDSMALL---HMCIWWANLVGVTVEAVTVDHGLRAEAADEAAVVAAFCK 86 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++HSV++W + + + AAAREARYAL++ AK+ +M HT DD ET MR Sbjct: 87 DQGVSHSVLNWDGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADDIAETFLMR 146 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL+ M D W +RP R +R++L + ++ W EDPSN D Sbjct: 147 LARTSGVD--GLAAMDARFDRDGVKW-ARPLWEQPRAQLRNYLRRHDVGWVEDPSNEDLS 203 Query: 199 FERVRVRRFV 208 R + R+ + Sbjct: 204 QTRPKARKIL 213 >gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7] gi|20140671|sp|Q92JK0|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7] Length = 478 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246] gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246] Length = 478 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1] gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magneticum AMB-1] Length = 443 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 149/354 (42%), Gaps = 22/354 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG+DS+ L + R + A++VDH LR + E V +R Sbjct: 27 LAVAVSGGADSLALALLAADWAKARGG---EVLALTVDHRLRPESAAEAARVGAWLARDG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I+H +++W+ KP L AAAR ARY L+ E + AH DDQ ET+ +R R Sbjct: 84 ISHRILAWEGDKPAADLQAAARAARYGLLGEACAAEGILHLALAHHQDDQAETLLLRLGR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL G+ W + RP L R + + L R W DPSN + F Sbjct: 144 -----GSGLEGLGAMAAERPTSWGRLLRPLLPVPRVRLEATLRHRGQEWTSDPSNRNPAF 198 Query: 200 ERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 RVR+R D+ + + + + V++ VA +++T+ + Sbjct: 199 ARVRLRHLAGDLAAEGMTPRRLAETAGRLARAQAAVDSMVAEAAARHVTLDPAGFGRLRP 258 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + L + + LL GG+ P +ER+ L G ++ I + Sbjct: 259 EALAGLPDEVGLRLLAGLLLSVGGEAHTPRLERLERLHATLCGGLEAARTLAGCRIVPQG 318 Query: 314 NFLWITR-AVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRK 361 + + + R R P L L P WDGR++ D+ L +GP+ RK Sbjct: 319 DSVVLCREPARVAPPLDLVPGSRIRWDGRFEAVVAGDAPPGLRLGALGPEGRRK 372 >gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5] gi|166988065|sp|A8F0E8|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5] Length = 477 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa] gi|166988066|sp|A8GQJ7|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189035969|sp|B0BVY4|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa] Length = 478 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211] gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211] Length = 529 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 94/191 (49%), Gaps = 20/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DS+ LL+ H + A + DH LR + +V +V DVC+RL Sbjct: 19 VLVAVSGGADSVALLLGAHEA-------GARVVAATFDHQLRADSAQDVAFVQDVCARLG 71 Query: 82 IAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V ++ + AAAR RYA ++ AK +I+TAHT D ET M Sbjct: 72 VPCEVGGADVARVARARGWSVEAAARTLRYAFLTRAAKARRVDVILTAHTARDDAETYLM 131 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A T + + N + RP+LR R D+ ++L R +W EDPSN D Sbjct: 132 EALRGEAHP---------TGIPEANGHVRRPWLRAARADVEAYLQARAQAWREDPSNADT 182 Query: 198 RFERVRVRRFV 208 F R VR V Sbjct: 183 YFTRNWVRHAV 193 >gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic] gi|259533756|sp|C4K162|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic] Length = 533 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 7/183 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + L Sbjct: 24 IAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNSLNRK 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R +R+ Sbjct: 81 HYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRLERNS 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ R Sbjct: 141 GIFGLSSSN----INWYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKYRRNV 196 Query: 204 VRR 206 +R+ Sbjct: 197 IRQ 199 >gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1] gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1] Length = 443 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 165/373 (44%), Gaps = 51/373 (13%) Query: 4 SPIESVRFFVR-SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 SP+ F R S++ P+ I +A SGG DS+ LLI L + + + G I A +VDH Sbjct: 13 SPVSPAEFSTRLSVLKPSKKIAIAFSGGPDSLALLI-LAAEWAKKRRG-ISLVAFTVDHG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E + + + L + H + W+ KP G+ AAAR+ARYAL+ ++ A Sbjct: 71 LRAASAAEAKAAARLSDELGVPHRTLKWRGVKPAKGIQAAARDARYALLLAACRSFGAGD 130 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWIS--RPFLRCRRE 175 ++ AH +DQ ET +R R G G+ G+ L D + RP + R Sbjct: 131 LLVAHHLEDQAETFLLRLAR-----GSGVDGLAAMPRARPLSDEEPAVRLLRPLIDLPRS 185 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKV 230 + + + + ++ DPSN ++RF+RV+ R+ + + L + R+ + Sbjct: 186 RLLATVARAGLTAIHDPSNENERFDRVKARKALALLAPLGLDAARLARTAEHMARARLAL 245 Query: 231 NNAVAMLIP--------KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQI 279 + A L+ ++ ++M + +A +I LRV A+C GG Sbjct: 246 EDETAALLRTHAVLSSFGHVEINMAAFLAAPAEI----------GLRVLGALCRIVGGGG 295 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGR----VVIDRRANFLWITR---AVRNLPTLILYP 332 P +E V ++ G + GR V + L TR A + P +IL Sbjct: 296 YGPRMEGLEEVY---QAAGTGTLGKGRTLHGVKLAASRGSLVATRELEAAKKSPAIILKA 352 Query: 333 EETTVWDGRYQFQ 345 E +WD R+ + Sbjct: 353 GEEGLWDRRFDIR 365 >gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5] gi|259533753|sp|C3PM75|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5] Length = 478 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + + +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSKLVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes scapularis] Length = 482 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALL-YLANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L RE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNVIRQ 199 >gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601] gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601] Length = 448 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 100/222 (45%), Gaps = 31/222 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I++AVSGG DSM +L H+ + ++VDH LR A +E V + C Sbjct: 24 FPSDIVLAVSGGGDSMAMLTLAHNWAH---VWGTRLWVVTVDHGLRPEAGNEAALVRETC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L H+ + W+ Q LM AAR AR LI ++ L+ AHT DD ET M Sbjct: 81 DELGHPHTTLRWRWDG-QGNLMDAARRARLDLIGRWRGGLSHVLL--AHTRDDVAETFLM 137 Query: 138 RSQRDYAEKGMGLSGM------------------CD-----TILYDLNLWISRPFLRCRR 174 R R G LS M CD L I RP L RR Sbjct: 138 RLARGSGVDG--LSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCLDMRR 195 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 ++R +L W EDP+N DD +ER R+R+ +R ++ L Sbjct: 196 AELRHYLRVLKGRWVEDPTNEDDHYERARIRKLLRGLEAEGL 237 >gi|257871355|ref|ZP_05651008.1| PP-loop family protein [Enterococcus gallinarum EG2] gi|257805519|gb|EEV34341.1| PP-loop family protein [Enterococcus gallinarum EG2] Length = 461 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 9/190 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V A L+AVS G DSM LL + + +FG V+H LRE + DE ++ D Sbjct: 16 VEDATCLLAVSTGVDSMVLLHVIEELFQQGTFG-----VAHVNHNLREASDDEAAFLKDY 70 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C I + W++ PQ G+ AAARE RY +E + ++TAH DDQ+ET+ Sbjct: 71 CQTRGIPYYERVWQDP-PQNGIEAAAREFRYHFFAETMTLQSYDWLLTAHHADDQMETML 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R+ + SG+ + N ++ RPFL +E+IR + +R I++ ED +N Sbjct: 130 MKMVRE--GRLQNASGIKRKQPFG-NGYLIRPFLTIAKEEIRDYARRRGIAYFEDETNQQ 186 Query: 197 DRFERVRVRR 206 F+R R+R Sbjct: 187 TLFQRNRLRH 196 >gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242] gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242] Length = 332 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 12/248 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DS+ L++ L + DR I + +VDH LR A+ E V + L Sbjct: 19 LLLAVSGGPDSVALML-LAAQWPDRRSHDIAVA--TVDHGLRPEARREAEQVGAWANALG 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H V++W+ KP+T + AR ARYAL+++ A I A I+TAH DDQ ET+ R R Sbjct: 76 FPHHVLTWQGEKPRTRVQERARTARYALLADCAGRIGAGAIVTAHHADDQAETILFRLTR 135 Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G G++G+ + + RP L R+ + + + + DPSN D+ + Sbjct: 136 -----GSGVAGLAGMTAESRCGGVALLRPLLGLRKAALEEICRRCDHDYFRDPSNIDEHY 190 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R R+R+ R + L A L + L + +A A L R+I+ + + Sbjct: 191 ARARLRKL-RPL-LAAQGLDDEALLRLGQRAAHADAALNFCAENARERAIVDVDSETARF 248 Query: 260 DSTLLFYL 267 D+ L L Sbjct: 249 DAAALREL 256 >gi|254419185|ref|ZP_05032909.1| PP-loop family [Brevundimonas sp. BAL3] gi|196185362|gb|EDX80338.1| PP-loop family [Brevundimonas sp. BAL3] Length = 449 Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 97/355 (27%), Positives = 153/355 (43%), Gaps = 51/355 (14%) Query: 9 VRFFVR-----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R F R S P + +A+SGG DS + + + R+ G+ +A+SVDH L Sbjct: 16 ARVFARLDRRLSSDAPQPVALALSGGGDS--IALLRLAAAWARARGR-PLTALSVDHRLN 72 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + D R+ + + W KP TGL AAAR AR+ LI+E A+ I A +++ Sbjct: 73 PASADWTRFAGEAARAAGADWRGLVWDGDKPATGLTAAARAARHRLIAEAARAIGARVVL 132 Query: 124 TAHTFDDQLETVYMRSQ-------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 AHT DD E MR++ R+++ + G L + RP L RRE Sbjct: 133 FAHTADDIAEADLMRAEGSTLGRVREWSPSPVWPEGR--------GLMLLRPLLDERRET 184 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 +R++L + W EDP+N D RF R R RR + + + N+ + Sbjct: 185 LRAWLAGQGAEWIEDPANADPRFGRSRARRALAGTVPDGAAAGRDRPSSEGITANHDGTV 244 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLK 295 I + V R + A A +C GG + P ++R+M L+ Sbjct: 245 RIAR--DVRARGLAA--------------------ALVCVGGGATPPRGDRLDRLMQRLQ 282 Query: 296 SGKRGCVSIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQ 345 G+ ++ ++ + + R A R P L+L+P VWDGR+ F+ Sbjct: 283 VGEDFAAALCGARVEADGETILLMREAGELARRAPPPLLLHPGVEAVWDGRFAFR 337 >gi|307294669|ref|ZP_07574511.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1] gi|306879143|gb|EFN10361.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1] Length = 314 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGG DSM LL L+ R+F + A +VDH LRE + DE V+D C IA Sbjct: 28 VAVSGGPDSMALLD-----LAARAFSG-RVEAATVDHGLREASADEAAMVADWCGNAGIA 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H+ + K + + + + AR RYAL+ E ++TAH DDQLET+ MR R Sbjct: 82 HATLHPKGAV-RGNVQSWARSQRYALLEEWRTAQGLDWLLTAHHADDQLETLLMRLNRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+ ++ RP L R+ ++ ++ L++++ + +DPSN+D RF+R Sbjct: 141 GVGGLAGVRARQGVVL-------RPLLGMRKAELLAYALEQDLPYIDDPSNSDPRFDRAA 193 Query: 204 VRRFVRDID 212 +R + +D Sbjct: 194 LRSALAGVD 202 >gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB5] gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB5] Length = 347 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 106/210 (50%), Gaps = 13/210 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58 +S E+ F PA I++AVSGG DS+ LL L+ R +K ++V Sbjct: 9 ISAREASHLFADWKAVPA-IVLAVSGGPDSLALLW-----LAARWRKALKRGPALGVVTV 62 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR A E R V + L + H + W KP TGL AAAR ARY L+++ AK Sbjct: 63 DHGLRPEAAREARAVKQLARTLDLPHRTLRWTGEKPTTGLPAAARAARYRLLAKAAKRFG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT IMTAHT DDQ ETV MR R GL+ M D + + RP L ++ + Sbjct: 123 ATHIMTAHTRDDQAETVLMRLSRGSGI--AGLAAMARETERDGAVLV-RPLLDVSKQRLI 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + L + I + DPSN D RF R R R + Sbjct: 180 ATLSKAQIEYTTDPSNLDPRFTRPRWRELM 209 >gi|58336616|ref|YP_193201.1| cell cycle [Lactobacillus acidophilus NCFM] gi|58253933|gb|AAV42170.1| putative cell cycle [Lactobacillus acidophilus NCFM] Length = 423 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM LL L + + F I A +H LR +++E R + D C + Sbjct: 24 LLVAASGGPDSMALLDMLKDLQKKQKFELI---AAHFNHQLRSDSEEETRILKDYCQKNE 80 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V W KN +P++G+ AAARE RY +++ AK A ++TAH DD +E + ++ Sbjct: 81 IPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENILLKFI 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M S +++ + L RP L +++I ++ +R IS+ D +N +D Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVTLL--RPLLSSSKQEILAYDKERGISFIVDSTNKEDDTM 197 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 198 RNRMRHHV 205 >gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magnetotacticum MS-1] Length = 429 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 152/361 (42%), Gaps = 36/361 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG+DS+ L + R + A++VDH LR + E V + Sbjct: 13 LAVAVSGGADSLALALLAAQWARARGG---EVLALTVDHRLRPDSTAEAERVGEWLGGEG 69 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IAH +++W+ KP L AAAR ARY L+ E ++ AH DDQ ET+ +R R Sbjct: 70 IAHRILAWEGDKPAADLQAAARAARYRLLGEACAAEGILHLLVAHHQDDQAETLLLRLGR 129 Query: 142 DYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL G+ W + RP L R + +FL R W +DPSN ++ F Sbjct: 130 -----GSGLDGLSAMAPERPTAWGRLLRPLLVVPRARLEAFLRHRGQDWVQDPSNRNEAF 184 Query: 200 ERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 RVR+RR D+ + + + + V+ VA +++T+ + Sbjct: 185 ARVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMVAEAAARHVTLDPAGYARLQP 244 Query: 255 DILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLKSGKR------GC--VSIG 305 +L + L +C GG+ P +ER+ L +G GC V +G Sbjct: 245 KVLARLPEEVGLRLLARLLLCVGGEDVTPRLERLERLYTALTAGLETARTLAGCRIVPVG 304 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYR 360 VI R R P + L P WDGR++ D+ L +GPQ Sbjct: 305 ETVIICR-------EPARMSPPVDLAPGTRIRWDGRFEAMVARDASPGLRLGGLGPQGRS 357 Query: 361 K 361 K Sbjct: 358 K 358 >gi|319409313|emb|CBI82957.1| tRNA(Ile)-lysidine synthase [Bartonella schoenbuchensis R1] Length = 518 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 1/129 (0%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS+ LL L + ++VDH LRE + E + V+++C +I Sbjct: 1 MAASGGGDSLALLFLLKDYFKT-LLSPPEIIVVTVDHQLREESACEAQKVAEICRAYQIK 59 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +V W+ +KP+T + AR ARY L+ + A+ ATLIMT HT +DQ+ET YMR QR Sbjct: 60 HVIVRWEGTKPKTDISQKARVARYDLLFQEAEKQGATLIMTGHTLNDQVETYYMRCQRVL 119 Query: 144 AEKGMGLSG 152 +K + G Sbjct: 120 KDKAVSQKG 128 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%) Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 GLS + L + + RP L +R+ +R++L R I W +DP+N D RFERVRVR + Sbjct: 203 GLSCIAREALLRRKVRLIRPLLGIKRDSLRAYLRLRGIEWIDDPTNDDLRFERVRVRHSI 262 Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQDILNIDSTLLFY 266 D + K+ + R + +A LI V + R I + L F Sbjct: 263 HFKDFSEVAQKVNEAALKRRQYAQMIADLILALDIVVEYGRCFIKRPEPFLCRHPGFPF- 321 Query: 267 LLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 ++ + A + GG L + + + L L S ++ ++ +I+ + R RN Sbjct: 322 VVGLFAVLMGGSPYLLASQKLSALNQKLCLHSLEKKRFTLAGSLIEYGQKGIAFWREARN 381 Query: 325 LPTLILYPEETTVWDGRYQFQN 346 + I+ P +T +WDGRYQ N Sbjct: 382 IQEAIILPGQTFLWDGRYQITN 403 >gi|254360930|ref|ZP_04977076.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213] gi|261493843|ref|ZP_05990355.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495109|ref|ZP_05991573.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092409|gb|EDN73472.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213] gi|261309179|gb|EEY10418.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310445|gb|EEY11636.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 421 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 33/328 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSRL 80 L+ +SGG DS+ LL F + F AI V H L A D + C RL Sbjct: 22 LIGLSGGVDSVVLL---------HLFARTSFHVRAIYVHHGLSPNADDWAAFCEQYCKRL 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ G+ AREARY I + K + TAH DDQ ET + + Sbjct: 73 NIPF-ILQKVRVDSSNGVENGAREARYQAIQQQLKP--NEVFATAHHLDDQAETFLLALK 129 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N + RP L + D+ + +Q + W ED SN D+R++ Sbjct: 130 RGSGVKG--LSAM-QAVTFLQNFTVFRPLLTFTKSDLMGYAVQHQLGWIEDESNADNRYD 186 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L L + + F + + A LI + L+ ++S Q L Sbjct: 187 ----RNFLRNSILPLLNQRWQHFSQMVARSAQHCAEQQALIEELLSNELKSRTGEKQQ-L 241 Query: 258 NIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310 NI+ F L + + + +P ++ V ++F K+ K V +G +I Sbjct: 242 NINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQAVISELIFAKADKNPQVKVGENIIR 301 Query: 311 RRANFLWITRAVRNLPTL-ILYPEETTV 337 R +++T + ++P ++ P ET V Sbjct: 302 RYQQAIYVTEEIADIPPFEVVLPTETKV 329 >gi|227903173|ref|ZP_04020978.1| cell cycle [Lactobacillus acidophilus ATCC 4796] gi|227868978|gb|EEJ76399.1| cell cycle [Lactobacillus acidophilus ATCC 4796] Length = 418 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM LL L + + F I A +H LR +++E R + D C + Sbjct: 19 LLVAASGGPDSMALLDMLKDLQKKQKFELI---AAHFNHQLRSDSEEETRILKDYCQKNE 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V W KN +P++G+ AAARE RY +++ AK A ++TAH DD +E + ++ Sbjct: 76 IPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENILLKFI 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M S +++ + L RP L +++I ++ +R IS+ D +N +D Sbjct: 136 RSGNPEEMN-SLQAVGVMHGVTLL--RPLLSSSKQEILAYDKERGISFIVDSTNKEDDTM 192 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 193 RNRMRHHV 200 >gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A] gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A] Length = 337 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 4/184 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGG DSM L+ S + G A++VDH LR + E R V ++ + L Sbjct: 21 LVLAVSGGPDSMALMWLAARWRSAMTRGP-DLIAVTVDHGLRRGSAREARDVKNLATSLG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H + W +KP++GL AAAR ARY L++ A+ A+ I+TAHT DDQ ETV MR R Sbjct: 80 VTHRTLRWSGAKPESGLPAAARAARYRLLARTARANGASHILTAHTRDDQAETVLMRISR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M + D ++RPFL + + + L + I + EDP+N D F R Sbjct: 140 GSGI--AGLSAMARETMRD-GFILARPFLNVPKSRLIATLKKAKIDYVEDPTNRDLNFTR 196 Query: 202 VRVR 205 R+R Sbjct: 197 PRLR 200 >gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2] gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2] Length = 469 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 24/242 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ VSGG DSM LL ALH + A VDH R E ++ ++R+V D C Sbjct: 13 LIAGVSGGPDSMALLHALHHTVP----ASATLIAAHVDHMFRGEESERDMRFVQDYCEAE 68 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ AAARE RYA E K A ++ H DDQ+ET+ Sbjct: 69 GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 128 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ + G+GL+G+ +D W+ RPFLR ++D+ ++ + I + DPSN++ Sbjct: 129 MKMAKGTV--GIGLAGIQPKRRFDSG-WLLRPFLRLSKDDLLAYCKENRIPFRTDPSNSE 185 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D + R R R H L K+ +D+ + + + ++LT + A+++D Sbjct: 186 DDYTRNRFRH-------HVLPFLKKESEDVHKRFQS-----VSEFLTEDELYLQALTKDK 233 Query: 257 LN 258 +N Sbjct: 234 MN 235 >gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301] gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301] Length = 389 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 156/375 (41%), Gaps = 32/375 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG+DSM L + S +R + A DH LR + DE + L Sbjct: 13 VAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPVSADEASLTGRRLAALG 69 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + ++ + P L A AR+AR+A ++ A+ ++ H DQ E MR+ R Sbjct: 70 IGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAAR 128 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL+GM D ++ I RP L +R FL R I W EDPSN D RFER Sbjct: 129 GP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFER 183 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 VRVR R L L D R VA ++ + +++ + L +++ Sbjct: 184 VRVRATRRQAALVPPSLD----ADRRAAAERDVAEILVRDVSLRPEGWAIVRAASLPVEA 239 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 L L RV GG P ++ER+ L+ G V R++ R W+ Sbjct: 240 --LAVLFRV----LGGAAYPPARAALERLAPELRPATLGGV---RIMAAGRHGPGWLLVR 290 Query: 322 VRNLPTLILYPEETTVWDGRYQFQN----------LSDSLIQIGPQSYRKADVPSGIPPI 371 + VWDGR++ ++ L DS +IG +S A + +P Sbjct: 291 EAAACAPPVAAVRGAVWDGRFRVRDVPPGARTIGALGDSAAEIGRRSGLPAALRRTLPAF 350 Query: 372 IAQRALSSMPSKEGG 386 + S+P GG Sbjct: 351 FGGDGVLSVPHLAGG 365 >gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01] gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01] gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-03] gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-07] gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-22] gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-26] gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-32] gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-12] Length = 435 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/333 (26%), Positives = 144/333 (43%), Gaps = 24/333 (7%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 FF YP I +AVSGG DS+ L SF + A+ VDH LR + E Sbjct: 37 FFPDQSDYPP-IAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGQEA 88 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + I ++ + K + + AREARYA + + T ++ H DD Sbjct: 89 QQTIARLRAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV+MR +G+ G T+ D+ L RP L R +R+ L Q ++ W + Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWI-TVRPDIRL--IRPLLGFSRTALRNTLRQAHLEWVD 205 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 DPSN D R ERVR+R +++ D A + K+ + LR++ A+ + +++ + Sbjct: 206 DPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLAQHVVMCPEGW 265 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 +A+ ++ ++D +L L+R I Y + ++ LK G +I Sbjct: 266 VALGPELPDVD--VLAALIR--------SIGGAAYPPAQSAVVRLKDMATEATLAGTRLI 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRY 342 R W+ E TVWD R+ Sbjct: 316 --RHAQKWMLMREAAAMAPAQQAENGTVWDNRF 346 >gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa] gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa] Length = 442 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 23/370 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL H LS R K ++V+H LR A E +V L + Sbjct: 29 IAVSGGIDSMTLL---H--LSARYCNKNTPIVLTVNHGLRPEAAQEALFVFQHSQNLNLK 83 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +++W P++ + ++AR RY L+ + +M AH +DQ ET+ +R Sbjct: 84 CHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIR----- 138 Query: 144 AEKGMGLSGMCDTILYD-LN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G GL G+ Y LN + I RP L R ++ + + NI+W D SN + +++R Sbjct: 139 LERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKYKR 198 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R + D ++ LY + + + + V + + L I I DI Sbjct: 199 TLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKLDI 258 Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313 L + + LL S G Q P Y + + +K+ K G + Sbjct: 259 FLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTNHN 318 Query: 314 NFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 N + ITR V + L + V WD R++ ++ + + S +P + Sbjct: 319 NIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELKK- 377 Query: 372 IAQRALSSMP 381 + + A+ +P Sbjct: 378 LHREAVRCLP 387 >gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217] gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217] Length = 419 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 28/352 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDS+ LL LH + G +A++VDH LR A E V+ +C+ Sbjct: 21 PPRLGVAVSGGSDSLALLHLLHDW---QRAGGPALAAVTVDHGLRPEAGAEAAEVAHICA 77 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RL + H + W+ L AR ARY L+S+ A T I HT DD ET MR Sbjct: 78 RLNVPHHTLHWQGCGGSGNLPDRARRARYTLMSDWAAAQGLTDIAIGHTQDDLAETFLMR 137 Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G+ G+ + RP L RE +R L +W +DP+N D Sbjct: 138 LAR-----GAGVDGLAAMRPRWTQEGVTFHRPLLGLAREALRDHLRGLRQTWIDDPTNVD 192 Query: 197 DRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 + R R R + +D L D R +++ V ++ Sbjct: 193 TSYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALSHTTHAAARTLTRVEAGDLLI 252 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 N+ + LL + G P ++ ++ ++G+ + G +++ Sbjct: 253 DHAGFANLPDEIARRLLHGALQWLTGAEYPPRGAALSALLAAARAGQTMTLQ-GGLLLPA 311 Query: 312 RANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSD----SLIQIGP 356 ++ L +TR AV++L T T +WD R+Q SD + +GP Sbjct: 312 KSGHLRLTREYDAVKDLRT-----PATALWDTRWQAIGPSDPADIEIAALGP 358 >gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas] gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas] Length = 434 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 23/370 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL H LS R K ++V+H LR A E +V L + Sbjct: 21 IAVSGGIDSMTLL---H--LSARYCNKNTPIVLTVNHGLRPEAAQEALFVFQHSQNLNLK 75 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +++W P++ + ++AR RY L+ + +M AH +DQ ET+ +R Sbjct: 76 CHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIR----- 130 Query: 144 AEKGMGLSGMCDTILYD-LN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G GL G+ Y LN + I RP L R ++ + + NI+W D SN + +++R Sbjct: 131 LERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKYKR 190 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R + D ++ LY + + + + V + + L I I DI Sbjct: 191 TLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKLDI 250 Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313 L + + LL S G Q P Y + + +K+ K G + Sbjct: 251 FLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTNHN 310 Query: 314 NFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 N + ITR V + L + V WD R++ ++ + + S +P + Sbjct: 311 NIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELKK- 369 Query: 372 IAQRALSSMP 381 + + A+ +P Sbjct: 370 LHREAVRCLP 379 >gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060] gi|254789037|sp|B8IP16|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060] Length = 339 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 8/195 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGG DS L+ + R + +VDH LR A E V+ + RL Sbjct: 29 VVLAVSGGPDSTALMGG-----AARLPPLVPVMVATVDHGLRPEAAAEAEAVARLAGRLG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H +++W KP+T L AAR ARY L+ + A+ A ++TAHT DDQ ETV MR Sbjct: 84 LPHRILAWTGPKPRTRLQEAARAARYRLLLDLAREQGAAALLTAHTLDDQAETVLMRLCA 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G + + + L + RPFL + + + + DP N D RF R Sbjct: 144 GSGPAGL---GGIEPVRHLGGLALVRPFLDLPKARLVATCAAEGWPFVVDPGNADARFAR 200 Query: 202 VRVRRFVRDIDLHAL 216 R+RR + + L Sbjct: 201 GRLRRVMPHLAAEGL 215 >gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580] gi|52783924|ref|YP_089753.1| YacA [Bacillus licheniformis ATCC 14580] gi|61216472|sp|Q65PF4|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580] gi|52346426|gb|AAU39060.1| YacA [Bacillus licheniformis ATCC 14580] Length = 476 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 24/242 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ VSGG DSM LL ALH + A VDH R E ++ ++R+V D C Sbjct: 20 LIAGVSGGPDSMALLHALHHTVP----ASATLIAAHVDHMFRGEESERDMRFVQDYCEAE 75 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ AAARE RYA E K A ++ H DDQ+ET+ Sbjct: 76 GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ + G+GL+G+ +D W+ RPFL+ ++D+ ++ + I + DPSN++ Sbjct: 136 MKMAKGTV--GIGLAGIQPKRRFDSG-WLLRPFLKLSKDDLLAYCKENRIPFRTDPSNSE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D + R R R H L K+ +D+ + + + ++LT + A+++D Sbjct: 193 DDYTRNRFRH-------HVLPFLKKESEDVHKRFQS-----VSEFLTEDELYLQALTKDK 240 Query: 257 LN 258 +N Sbjct: 241 MN 242 >gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5] gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5] Length = 338 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 11/206 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHC 61 +S E+ + F PA +L AVSGG DS+ LL + RS K A++VDH Sbjct: 11 ISAQEARQLFAGWKNLPALVL-AVSGGPDSVALLWL--AARWRRSLKKGPDLLAVTVDHG 67 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR A E R V + S L IAH ++W+ +KP+TG+ AAREARY L++ A++ +A Sbjct: 68 LRAAAAHEAREVKRLASALGIAHRTLTWRGTKPKTGVPEAAREARYELLARAARSASAVA 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRS 179 I TAHT DDQ ET+ MR R G GL+G+ ++ RP L + + + Sbjct: 128 IATAHTQDDQAETILMRLTR-----GSGLTGLAGMAAQSERHGVALLRPLLDVPKARLVA 182 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 L + I++ DP+N D + R R+R Sbjct: 183 TLNRAKIAYANDPTNHDPAYTRSRLR 208 >gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1] gi|167710570|gb|EDS21149.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1] Length = 480 Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 14/192 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++ VSGG+DS+ LL+ L+ + R + +A+ ++H +R A D+ ++V D+C +L Sbjct: 31 HIIIGVSGGADSVYLLLILNEL---RESMNLTITAVHINHMIRREAVDDQKFVQDLCGQL 87 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V + + L A R+ARY ++ K NA I AH +DQ ET Sbjct: 88 SILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQNDQAETFL 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G G+ G D NL RP L ++E+I +L + +W ED SN D Sbjct: 148 YRVVR-----GTGIYGAGAMREKDGNLI--RPLLCVKKEEIVKYLKEAGQAWVEDASNQD 200 Query: 197 DRFERVRVRRFV 208 D F R ++R V Sbjct: 201 DAFARNQIRNQV 212 >gi|206890355|ref|YP_002248733.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742293|gb|ACI21350.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermodesulfovibrio yellowstonii DSM 11347] Length = 460 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 15/191 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 H+LV +SGG DS+ LL L+ + +S K+K SA +DH LR + E+ + +C Sbjct: 22 HVLVGLSGGPDSVCLLQILNIL---KSSYKLKISAAYIDHELRPDDVPKEIEFCKKLCES 78 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I V S K + + AAR RYA + + + INA I AH DDQ ETV Sbjct: 79 LNIPFYVQSINVKDFAKKEKISIQEAARILRYAALDQISININAHKIAVAHNADDQAETV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G G +G+ + + I RP + R +I FL ++NIS+ DPSN Sbjct: 139 IMRLLR-----GAGPAGLSG--IPPVRKKIIRPLIEIERTEIERFLSEKNISYIIDPSNE 191 Query: 196 DDRFERVRVRR 206 ++ R ++R+ Sbjct: 192 SMKYLRNKIRK 202 >gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ] gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ] Length = 447 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 17/204 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 +R +V A VAVSGG DSM L L+AL S S G + ++V+H R A++EV Sbjct: 1 MRDIVPNAQYAVAVSGGVDSMTLMRLVALFHK-SSASVGSP--TILTVNHGFRPEARNEV 57 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +V + L + ++ W+N + AR RY L+ + N +++TAHT +D Sbjct: 58 SFVHKQATMLGLECHMLHWENPIRKKS-QVVARNIRYQLLLQWCSAHNVKVLLTAHTKND 116 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 Q ETV +R E+G G+ G+ +++ D+ I RP L R +I+ + +Q Sbjct: 117 QAETVLIR-----LERGSGIDGLAGIRERSVIGDVT--IIRPLLDFTRREIQEYAIQHQQ 169 Query: 187 SWCEDPSNTDDRFERVRVRRFVRD 210 W EDPSN+D ++ R R F+ + Sbjct: 170 PWIEDPSNSDPKYRRTFYRNFINN 193 >gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645] gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645] Length = 328 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 14/196 (7%) Query: 18 YPAH------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 +P H ++VAVSGG+DS+ LL +L ++ R G + A+ VDH LR+ + + + Sbjct: 12 WPPHSWSDCTVMVAVSGGADSVALLRSLAAI---RESGPGRLIAVHVDHNLRKESDTDAQ 68 Query: 72 YVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +V+ + +L I + V ++ S P G+ AAAR ARY + A A ++TAHT D Sbjct: 69 FVAQLAQQLGIEGILGRVDFELSGPD-GIEAAARSARYGFLRTFAMDHGARYVVTAHTAD 127 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ETV R R + GLSG+ +L + + RP L RR ++ ++L ++ Sbjct: 128 DQIETVLHRILRGTSLA--GLSGIPRARELELGISLLRPMLSIRRSEVEAYLADLGQTFR 185 Query: 190 EDPSNTDDRFERVRVR 205 D +N + RF R R+R Sbjct: 186 HDETNDESRFFRNRLR 201 >gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5] gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5] Length = 390 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 152/375 (40%), Gaps = 32/375 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG+DSM L + S +R + A DH LR + DE + L Sbjct: 14 VAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPESADEASLTGRRLAALG 70 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + ++ + P L A AR+AR+A ++ A+ ++ H DQ E MR+ R Sbjct: 71 IGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAAR 129 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL+GM D ++ I RP L +R FL R I W EDPSN D RFER Sbjct: 130 GP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFER 184 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 VRVR R L L D R VA + + +++ + L +++ Sbjct: 185 VRVRATRRQAALVPPSLD----ADRRAAAERDVAETLARNVSLRPEGWAIVRAASLPVEA 240 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 L L RV GG P ++ER+ L+ G V R++ R W+ Sbjct: 241 --LAVLFRV----LGGAAYPPARAALERLTPALRPATLGGV---RIMAAGRHGPGWLLVR 291 Query: 322 VRNLPTLILYPEETTVWDGRYQ----------FQNLSDSLIQIGPQSYRKADVPSGIPPI 371 + VWDGR++ L DS +IG +S + +P Sbjct: 292 EAAACAPPVAAVRGAVWDGRFRVCDVPPGARTIGALGDSAAEIGRRSGLPGALRRTLPAF 351 Query: 372 IAQRALSSMPSKEGG 386 + S+P GG Sbjct: 352 FGGDGVLSVPHLAGG 366 >gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C] gi|122425129|sp|Q1RGN9|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C] Length = 430 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 21/334 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ +SVDH LR+ +K E+ Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALL-YLANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + + L AR+ RY L++ + ++ +++TAH DD +E +R Sbjct: 77 LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ S ++ + N I RP + ++ ++L NI W ED SN ++ Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 R +R + + +Y+K ++KVN + L + + IS+ Sbjct: 193 RRNTIR---QKLAKEEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248 Query: 255 -DILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 D++ + L+ I GQ + S+E ++ ++ ++ VI Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343 R N L I R + LP L ++ VWD R++ Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFR 342 >gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2] gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2] Length = 422 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 14/209 (6%) Query: 19 PAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 PA + +AVSGG DSM LL +A+ + L R A++VDH LR + E V+ C Sbjct: 30 PAVLGLAVSGGGDSMALLHLAVAAGLPCR--------AVTVDHGLRAESAAEAAGVARAC 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L + H + W+ + L AR ARYALI+E A + H DD ET+ + Sbjct: 82 AALAVPHDTLRWQGWDGRGNLQDQARRARYALIAEWALAHGIAAVALGHNRDDVAETLLL 141 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R GL+ M + W+ RP L R ++R +L R + W +DPSN + Sbjct: 142 RLARGAGVD--GLAAMAARRRHQGVNWL-RPLLEIGRGELRDWLAGRGVVWVDDPSNDNA 198 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDL 226 RF+RVR+R+ L AL L ++ ++ Sbjct: 199 RFDRVRLRQAAG--TLAALGLTTERLAEV 225 >gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389] gi|166988064|sp|A8GY99|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389] Length = 430 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 21/334 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ +SVDH LR+ +K E+ Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALL-YLANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + + L AR+ RY L++ + ++ +++TAH DD +E +R Sbjct: 77 LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ S ++ + N I RP + ++ ++L NI W ED SN ++ Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 R +R + + +Y+K ++KVN + L + + IS+ Sbjct: 193 RRNTIR---QKLAKEEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248 Query: 255 -DILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 D++ + L+ I GQ + S+E ++ ++ ++ VI Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343 R N L I R + LP L ++ VWD R++ Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFR 342 >gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002] gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002] Length = 351 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 28/220 (12%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F SL ++ VAVSGG DS+ L L +S+ + KIK VDH LR + E Sbjct: 32 FSSSLNSEENLAVAVSGGPDSLALAYLAKCYSIKN-----KIKVKFFLVDHRLRNESTKE 86 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + ++ I V+ WK KP + + AREARY+L+S+ K N ++ H + Sbjct: 87 ATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSN 146 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLWISRPFLRCRREDIRSFLLQRN 185 D +E +R R G GL+G+ ++ Y D +L I RP L ++ D+ N Sbjct: 147 DLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLNILRPLLNLKKNDL------IN 195 Query: 186 IS------WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 IS + +DPSN ++ ++R R+R + ++ L LK Sbjct: 196 ISKIVFKFFIKDPSNINEIYKRTRIRTLLESLEKEGLDLK 235 >gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45] gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45] Length = 445 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 160/397 (40%), Gaps = 45/397 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P I +AVSGG DSM +L H+ +G ++ ++VDH LR A E V D C Sbjct: 21 FPLDIGLAVSGGGDSMAMLTLAHNWT--HRWG-VRLWVVTVDHGLRPEAAAEATLVRDTC 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W + Q LM AAR R +LI + A L AHT DD ET M Sbjct: 78 AELGWPHTTLRW-HWDGQGNLMDAARRGRLSLIGRWRGGLPAVLF--AHTRDDVAETFLM 134 Query: 138 RSQRDYAEKGMGLSGMC----------------DTILYDLNLWIS-------RPFLRCRR 174 R R GLS M D D I+ RP L R Sbjct: 135 RLARGSGVD--GLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCLDMGR 192 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 E++R +L W +DPSN D ++R RVR+ + ++ L + R+ Sbjct: 193 EELRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAGRMSRAREA 252 Query: 235 AMLIPKYLTVHMRSIIAISQDIL-------NIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 H ++ D++ +++ LL + P + Sbjct: 253 LRAR-AVAGWHSCGREGVAGDLILDRDAFAALEADTRMRLLAAALQYVSSAEYRPRAAQL 311 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 E ++ L +G G + + DR + I R + L E +WDGR++ + Sbjct: 312 EALLDRLDAGAGGTLHGAELRCDR--AEIRIFREYAAVAGLRRAVTEGGLWDGRWRVSHP 369 Query: 348 SDSLIQI---GPQSYRK-ADVPSGIPPIIAQRALSSM 380 + S ++I G +R+ A+ +G PP RAL ++ Sbjct: 370 TPSGLEIRALGEDGWRQSAERRAGGPPHAVARALPAI 406 >gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid E] gi|6226316|sp|Q9ZEA3|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii] gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii Rp22] Length = 430 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 109/434 (25%), Positives = 183/434 (42%), Gaps = 54/434 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ ISVDH LR +K E Y+ + S Sbjct: 20 SKIAIAVSGGSDSISLL-YLANIWARKN--NIELFVISVDHNLRPQSKQENYYIHTISSN 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKYYNLSFDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ I W ED SN D++ Sbjct: 137 ERNSGIFGLSSSN----IHWYNNIQIIRPLYNIPKSELVEYLVNHKIKWFEDESNLSDKY 192 Query: 200 ER--VRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R +R + F + Y+K + Q L+ LI L + S IA + I Sbjct: 193 RRNIIRQKLFKEEN-----YIKAEISLQQLKTN------KLIEDELKPALISAIAEAVKI 241 Query: 257 LNIDSTLL------FYLLRVSAAICG-------GQISLPGYRSMERVMLFLKSGKRGCVS 303 T L +L V A I GQ + S+ ++ + + Sbjct: 242 FEYGFTFLDLVKFDKFLNEVKAQIINFLLIMISGQSRSARFYSIAHILKLISQDINFKNT 301 Query: 304 IGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY---QFQNLSDSLIQIGPQSY 359 + VI R N L I R + LP + +++ +WD R+ + Q D +I +Y Sbjct: 302 VHGCVIKRIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQKTPDCVI-----TY 356 Query: 360 RKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFS 409 I + + L ++ K L P + + K +D V + F Sbjct: 357 LSLADYKAIKKQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDV-WNFE 415 Query: 410 ISFGKVFIPRLPFF 423 +SF F+ R F Sbjct: 416 VSFAPNFVSRFTHF 429 >gi|90418979|ref|ZP_01226890.1| putative ATPase, PP-loop superfamily implicated in cell cycle control [Aurantimonas manganoxydans SI85-9A1] gi|90337059|gb|EAS50764.1| putative ATPase, PP-loop superfamily implicated in cell cycle control [Aurantimonas manganoxydans SI85-9A1] Length = 410 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 11/260 (4%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS+ L++A ++ + + +F +VDH LR+ + E RYV+ V +R RI+H Sbjct: 1 MSGGPDSLALVLAAIALQGTAALPQTRFHIATVDHGLRDASAAEARYVAGVAARFRISHE 60 Query: 86 VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 + W + AAAREARYAL+S+ A+ AT+I+TAH DDQ ET M +R Sbjct: 61 TLRWDAPARTGNIAAAAREARYALLSDAARRFGATVILTAHHEDDQCETHLMARERGAGV 120 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 +GL+GM +L ++RPFL + +++ + + DP+N D RV++R Sbjct: 121 --VGLAGMRPVRSLASDLVLARPFLDVAGDRLKASVAAHRLPAVADPTNDDPASRRVQLR 178 Query: 206 RFVR--DIDLHALYLKMKKFQD----LRVKVNNAV-AMLIPKYLTVHMRSIIAISQDILN 258 R + +D AL ++ + L + +A+ AM L + + IS++ L Sbjct: 179 RQIAAGALDRDALRARIAGHRSERDALEAGLGDAIAAMQAAGELRLTDAGTLEISRNALR 238 Query: 259 --IDSTLLFYLLRVSAAICG 276 D +L R AA+ G Sbjct: 239 RLGDDAAFTFLQRAVAAVGG 258 >gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571] gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571] Length = 332 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 16/186 (8%) Query: 26 VSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +SGG DS +L+ + +L SF F A +VDH LR A DE V +C L Sbjct: 1 MSGGPDSTAMLVLARIWRYGLLDGPSF----FVA-TVDHGLRPEATDEALAVGALCEELG 55 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ KP++G+ AAR+ R+AL+ A+ + AHT DDQ ETV R R Sbjct: 56 LPHVILPWRGPKPRSGIQEAARDERFALLRSFARQNGLDGLALAHTQDDQAETVLFRLCR 115 Query: 142 DYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G G+ G+ + L + RPFL + + + L + DPSN D R+ Sbjct: 116 -----GSGIGGLAAMRPVSRRNGLAVLRPFLSIAKARLVATLAVSGTPFVRDPSNEDTRY 170 Query: 200 ERVRVR 205 R R+R Sbjct: 171 ARPRLR 176 >gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis ITI-1157] gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis ITI-1157] Length = 417 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 38/372 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ + VAVSGGSDS LL L S +++ + A +VDH LR + E V+ +C Sbjct: 21 PSRLGVAVSGGSDSTALL-HLMSRIAEGT--DTNLFAATVDHGLRPESAAEAAKVAALCW 77 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L I H ++ W L AR ARY L+ + A + I HT DDQ ETV MR Sbjct: 78 ELEIPHEILKWTGWDGTGNLQDQARRARYRLLRDWAHAQDIPAIALGHTADDQAETVLMR 137 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R A GLS M ++D + + RP L R +R +L+ + I W EDPSN + R Sbjct: 138 LGR--AAGVTGLSAMPVVRMFD-GVALVRPLLFATRSQLRDYLVAQAIDWMEDPSNQNIR 194 Query: 199 FERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSII---- 250 F+R++ R+ + + +L + + + N A+A + LTV I Sbjct: 195 FDRIKARQSLGQLAELGISAESLARVAENLGHANTALAQYTQETAQRLTVEQAGSIRLDC 254 Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 S + ++ ++R I GG P S++R + + +G+ +IG + Sbjct: 255 AGFSGLPKELQRRIVIGIVRW---IAGGDYP-PRQASVDRTISAVSAGR--PTTIGGCAL 308 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 F W R + + L+ P WD R+ I GP D+P Sbjct: 309 VPDGEFAWFCRELNPVTDLVTSP--GLQWDRRW---------IVSGP------DLPGAQV 351 Query: 370 PIIAQRALSSMP 381 +A+R L +P Sbjct: 352 RALAERGLKQLP 363 >gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington] gi|61216485|sp|Q68XR8|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington] Length = 430 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 7/187 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LR +K E Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALL-YLANIWAEKN--NIELFIISVDHNLRAQSKQENYYIQSISNN 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L+ + +S+ + + L A ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LKRKYYNLSFDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S I + N+ I RP + ++ +L+ I W ED SN D++ Sbjct: 137 ERNSGIFGLSSSN----IHWYNNIQIIRPLYNIPKSELVKYLVTNKIKWFEDESNLSDKY 192 Query: 200 ERVRVRR 206 R +R+ Sbjct: 193 RRNIIRQ 199 >gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193] gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193] Length = 399 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 11/191 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA I +AVSGG DS+ L+ L D ++ +VDH LR ++ E + + Sbjct: 2 PARIGIAVSGGGDSVALMHLLKECFCDDP---VELMVATVDHGLRAESRQEAEDTARMAR 58 Query: 79 RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H +++W+ +TG L AR ARY L++ A+ ++ HT DDQ ETV M Sbjct: 59 ELGLRHEILTWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADDQAETVIM 118 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE--DIRSFLLQRNISWCEDPSNT 195 R R G++G+ + +S ++R +L SW EDPSN Sbjct: 119 RLMR-----ASGVNGLAGIPVRRTQDGVSLLRPLLGLRRVELRQYLDAAGQSWIEDPSNE 173 Query: 196 DDRFERVRVRR 206 D+ ++R+++R+ Sbjct: 174 DESYDRIKIRK 184 >gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis RB2256] gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis RB2256] Length = 284 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 10/156 (6%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEH 113 A +VDH LR+ + DE R V+ C+R I HS + + P G L AAAR RY L+ + Sbjct: 17 AATVDHGLRKGSDDEARMVAAFCAREHIPHSTL--RPPTPIRGSLQAAARTERYRLLEQW 74 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + I+TAH DDQLET+ MR R G+ G+ + N + RP L R Sbjct: 75 REAHALDHIVTAHHADDQLETIVMRLNR-----ASGVGGLA--AIRATNGAVLRPLLGWR 127 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 R ++ L ++ + +DPSN+DDRF+R R+R +R Sbjct: 128 RRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALR 163 >gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] gi|151280695|gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] Length = 462 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 21/200 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDV 76 A I +A SGG DS LL LH+ +G +I+ A V H L A D + + Sbjct: 24 AKIALAYSGGLDSAALLHLLHA------YGLAQQIEIFAFHVHHGLSPNADDWLAHCRAQ 77 Query: 77 CSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C+ L + A V + K G+ AAR++RYA + + + L++TAH DDQ E Sbjct: 78 CAALGVVFDARQVQVTRQGK--NGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGM-----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 TV ++ R GLSGM +L D NL + RP L+ RRED+++++ I + Sbjct: 136 TVLLQLLR--GSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQF 193 Query: 189 CEDPSNTDDRFERVRVRRFV 208 ED SN D R+ R +R V Sbjct: 194 VEDESNLDPRYARNALRHQV 213 >gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1] gi|189035964|sp|A5ERG8|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1] Length = 358 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ R F + +AVSGG DSM L+ + R+ G + A++VDH L Sbjct: 12 ISAAEAERLFA-PFADSGVLTLAVSGGPDSMALMWLAARWRATRAGGP-RLLAVTVDHGL 69 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R ++ E V + +L + H + W KP G+ AAR ARY L++ A+ A+ + Sbjct: 70 RPESRREALMVKQLARQLGLTHRTLRWSGEKPAAGIPEAARIARYRLLARAAEQAGASHV 129 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ETV MR R GL+ M D L ++RP L + + + L Sbjct: 130 VTAHTRDDQAETVLMRLLRGSGIA--GLAAMAPVSRRD-GLLLARPLLSLSKARLLATLR 186 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 I++ +DP+N D F R R+R Sbjct: 187 SAGIAFADDPTNRDPAFTRPRLR 209 >gi|115378573|ref|ZP_01465727.1| PP-loop family [Stigmatella aurantiaca DW4/3-1] gi|115364401|gb|EAU63482.1| PP-loop family [Stigmatella aurantiaca DW4/3-1] Length = 468 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 19/212 (8%) Query: 5 PIESVRFFVRSL------VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 P + R R+L V AH +L+AVSGG DS LL L + L G I Sbjct: 20 PRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALL--LGTALVRERLG-ILVEVA 76 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 ++DH LR A +EVR V + +R ++ V S + K GL AREARYA +S+ Sbjct: 77 TLDHGLRPEAMEEVRAVERLAARQKMICHVRSL-HVKEGPGLEVRAREARYAALSQLCSE 135 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I TAHT DQ ET+ MR R + +G T + + RP L RE Sbjct: 136 RKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTREQ 188 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +FL ++ + DP N D RF R R+R V Sbjct: 189 VEAFLGEQEEGFAVDPMNADPRFLRARIRHHV 220 >gi|238759930|ref|ZP_04621084.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236] gi|238701837|gb|EEP94400.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236] Length = 445 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++K AI + H L A V++ C + Sbjct: 18 HVLVGFSGGLDS-SVLLHLLVCLRELLIPELKVRAIHIHHGLNPLADSWVKHCQRQCEQW 76 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ VV K Q G+ AAAR ARY S H +++TA DDQ ET + + Sbjct: 77 QVPLEVVRVKIDSRQNGVEAAARTARYQAFSSHMAA--DEVLLTAQHLDDQCETFLLALK 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLSGM ++ + + + RP L RE + ++ + +SW ED SN DDRF+ Sbjct: 135 RGSGPA--GLSGMAASLPFAHSQ-LLRPLLAFSREMLENYACAQQLSWIEDDSNQDDRFD 191 Query: 201 RVRVRRFVRDIDLHALYLKMKKF 223 R F+R L LY + F Sbjct: 192 ----RNFLRLRVLPLLYQRWPHF 210 >gi|303326966|ref|ZP_07357408.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3] gi|302862954|gb|EFL85886.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3] Length = 366 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 99/205 (48%), Gaps = 14/205 (6%) Query: 10 RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 RF++R L P A +++A+SGG+DS L LH +LS R K+ A++V+H LR A Sbjct: 23 RFYLRRLEIPRGARLVLALSGGADSTALACILH-ILSPRL--KLDLFALTVNHGLRPEAD 79 Query: 68 DEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + R D+C+ L I H+ V+ S GL A R ARYAL+ E + A ++ Sbjct: 80 ADARCARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQADFVV 139 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H +D E V +R R G G + D + RP L R + +R L Q Sbjct: 140 LGHHNEDLSEDVLLRLTR-----GTGWPALGGMAARDDTRRLLRPLLFTRPQALRELLRQ 194 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 I W ED SN F R R+R V Sbjct: 195 CGIVWREDASNDSPAFTRNRLRHNV 219 >gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 438 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +L Sbjct: 19 VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ W+ S Q AAAR+ARYA ++ A +A ++MTAH DDQLET+ R Sbjct: 72 QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 131 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L G+ D + L RP L + IRS+ Q N+ +CED SN D + Sbjct: 132 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 187 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 188 ARNQLRHQV 196 >gi|310821984|ref|YP_003954342.1| tRNA(ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1] gi|309395056|gb|ADO72515.1| tRNA(Ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 19/212 (8%) Query: 5 PIESVRFFVRSL------VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 P + R R+L V AH +L+AVSGG DS LL L + L G I Sbjct: 4 PRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALL--LGTALVRERLG-ILVEVA 60 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 ++DH LR A +EVR V + +R ++ V S + K GL AREARYA +S+ Sbjct: 61 TLDHGLRPEAMEEVRAVERLAARQKMICHVRSL-HVKEGPGLEVRAREARYAALSQLCSE 119 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I TAHT DQ ET+ MR R + +G T + + RP L RE Sbjct: 120 RKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTREQ 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +FL ++ + DP N D RF R R+R V Sbjct: 173 VEAFLGEQEEGFAVDPMNADPRFLRARIRHHV 204 >gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi] Length = 501 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 11/190 (5%) Query: 24 VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VAVSGG DS+ LL ALH ++ + ++V+H R A E R+V L Sbjct: 74 VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTVNHGFRAEADHETRFVQKRAVAL 128 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ W + + ARE RY+L+ + + ++TAH DQ ETV M + Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLSGM + ++ ++ I RP L R++I + Q+ +SW EDPSN D ++ Sbjct: 189 RGSGID--GLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKYR 245 Query: 201 RVRVRRFVRD 210 R R + + Sbjct: 246 RTFFRNLIAE 255 >gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida] gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico] gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia] gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida] Length = 501 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 13/191 (6%) Query: 24 VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VAVSGG DS+ LL ALH ++ + ++V+H R A E R+V L Sbjct: 74 VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTVNHGFRAEADHETRFVQKRAVAL 128 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ W + + ARE RY+L+ + + ++TAH DQ ETV M + Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188 Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ GLSGM + ++ ++ I RP L R++I + Q+ +SW EDPSN D ++ Sbjct: 189 RG---SGIDGLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKY 244 Query: 200 ERVRVRRFVRD 210 R R + + Sbjct: 245 RRTFFRNLIAE 255 >gi|242371661|ref|ZP_04817235.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W1] gi|242350610|gb|EES42211.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W1] Length = 432 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 23/230 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78 AH++VAVS G DSM LL HS+L D K + + V+H LR + +E +++ D C Sbjct: 12 AHLVVAVSTGVDSMSLL---HSLLHDYHNTYRKLTCVHVNHGLRHQSVEEEQFLKDYCRA 68 Query: 79 ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + H +S K + + AR+ RY E + I+A ++TAH DDQLET+ Sbjct: 69 HHIELYVKHLDLSQIVEKGNS-IQHEARQRRYDWFGEIIQKIDADALLTAHHLDDQLETI 127 Query: 136 YMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R S R +G+S + + Y + RP L +EDI ++ I + ED S Sbjct: 128 FYRLLSGRS-TRSALGMSLISNYKHYR----VCRPLLEVSKEDILAYQHSNTIPYFEDDS 182 Query: 194 NTDDRFERVRVRRFV-----RD--IDLHALYLKMKKFQDLRVKVNNAVAM 236 N D ++ R +R+ + R+ +D H L L++K + D +++ N A Sbjct: 183 NQDTKYVRNDIRQRILPTINRNPFLDTHHL-LRLKDWHDNELQLLNEYAQ 231 >gi|304321216|ref|YP_003854859.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis HTCC2503] gi|303300118|gb|ADM09717.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis HTCC2503] Length = 393 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%) Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTI 117 +R ++++E V+ C + H+ ++W S P L AAAR+ARY L+ + + Sbjct: 1 MRPSSREEADLVAAWCRARGLRHTTLTWARSDPARKGGGTLTAAARQARYKLLCQACEQH 60 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCR 173 + TAHT DDQ ETV+MR +R G G++GM L + + RP L R Sbjct: 61 GLDRVATAHTADDQAETVFMRLRRG---GGQGMAGMPRERLIAAGPGPAIRLLRPLLGVR 117 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 R +R++ ++ + +DPSN D R+ERVRVR + ++ L Sbjct: 118 RARLRAYAKTHDLPFVDDPSNADPRYERVRVRALLGALEEQGL 160 >gi|187251952|ref|YP_001876434.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191] gi|186972112|gb|ACC99097.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191] Length = 241 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 9/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV VSGG+DS+ LL L + + F + A ++H LRE AK + + +C +L Sbjct: 28 VLVGVSGGADSVCLLHFLTQLAQKKRF---RVYACHINHSLRENAKKDELFTKKLCEQLG 84 Query: 82 IAHSVVSW--KNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V++ KN K + + AAR+ARY+ AK INA + AH DD +ET ++ Sbjct: 85 VELFVITKDVKNIALKNKLSIEHAARKARYSAFESAAKKINAGYLALAHHLDDNVETFFL 144 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R K GL+G+ + N I RP L RR+D+ +++ + + D +N+D+ Sbjct: 145 NILR--GTKAKGLTGIPRVRPLNKNTVIIRPLLNIRRQDVINYVKFNKLKFITDETNSDE 202 Query: 198 RFERVRVR 205 ++ R VR Sbjct: 203 KYTRNWVR 210 >gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang] gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str. Zhang] Length = 436 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +L Sbjct: 17 VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ W+ S Q AAAR+ARYA ++ A +A ++MTAH DDQLET+ R Sbjct: 70 QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L G+ D + L RP L + IRS+ Q N+ +CED SN D + Sbjct: 130 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 186 ARNQLRHQV 194 >gi|296186909|ref|ZP_06855310.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7] gi|296048623|gb|EFG88056.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7] Length = 464 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VAVSGG DSM LL L+S+ R I+ A V+HCLR E+ KDE YV + C + Sbjct: 21 VIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNHCLRGNESDKDE-EYVKEFCEK 76 Query: 80 LRI---AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I + SV K K Q +A R ARY ++ K +NA I AH +DQ ET+ Sbjct: 77 LNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKKELNAQKIAIAHNANDQAETI 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ N+++ RP + R +I + + NI+ D +N Sbjct: 137 LMRIMR-----GTGLEGLVGIKAVRDNIFV-RPLIDVTRHEIEEYCCKENINPRIDKTNL 190 Query: 196 DDRFERVRVR 205 + + R +VR Sbjct: 191 ETIYSRNKVR 200 >gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 436 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +L Sbjct: 17 VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ W+ S Q AAAR+ARYA ++ A +A ++MTAH DDQLET+ R Sbjct: 70 QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L G+ D + L RP L + IRS+ Q N+ +CED SN D + Sbjct: 130 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 186 ARNQLRHQV 194 >gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus casei BL23] gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus casei BL23] gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W] gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II] Length = 436 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +L Sbjct: 17 VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ W+ S Q AAAR+ARYA ++ A +A ++MTAH DDQLET+ R Sbjct: 70 QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L G+ D + L RP L + IRS+ Q N+ +CED SN D + Sbjct: 130 R--SGDPAALIGIRADRAWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 186 ARNQLRHQV 194 >gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 806 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 22/207 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 YP + VA+SGG+DS+ L + L L + AI+VDH LR +++E YV +C Sbjct: 121 YP--LAVALSGGADSLTLTLLLDEYLRECEQKAASLLAITVDHQLRAESREEAEYVHKIC 178 Query: 78 SRLRIAHSVVS--WK--------NSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126 IAH + S W + KP ++ + AR+ RY+ + + ++ + H Sbjct: 179 EERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLEHKCRKVSVKYLFVGH 238 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSF 180 T DDQ ET+ R R GL+GM + N +++ RP L + ++ Sbjct: 239 TLDDQEETILYRLARGSGVN--GLAGMDPITKWFWNEEMGEHIYLIRPLLSVPKSRLQQT 296 Query: 181 LLQR-NISWCEDPSNTDDRFERVRVRR 206 +QR + W EDPSN D F+RVR+R+ Sbjct: 297 CMQRFHQDWIEDPSNHSDTFDRVRIRK 323 >gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 422 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 147/348 (42%), Gaps = 35/348 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYV 73 S Y + VAVSGG DS ++ LH + + K+ +A++V+H LR ++ E +V Sbjct: 5 SAFYNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPTALTVNHGLRPESQKEADFV 61 Query: 74 SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L S +++W+ + + AR+ARY L++E K N ++ AH DDQ Sbjct: 62 VSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQA 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET +R E+G G+ G+ D + ++I RP L R +I + + W E Sbjct: 122 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWVE 176 Query: 191 DPSNTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAML 237 D SN D ++ R R ++ D L AL++K R+ N+ V + Sbjct: 177 DRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVH 236 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLK 295 Y+ + + + ++I LL S + P Y S+ + + K Sbjct: 237 DLGYIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQK 289 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRY 342 C G + N L I + + TL L E+T WD R+ Sbjct: 290 DSNVNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNESTQWDNRF 337 >gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083] gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083] Length = 389 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 15/197 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + +A+SGGSDS LL VL+ +FG AI++DH LR A+ E R + +C+ Sbjct: 11 APLGIALSGGSDSTALL-----VLAVDAFGAENLQAITIDHGLRAAAQAEARQAAKLCAS 65 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-INA-TLIMTAHTFDDQLETVYM 137 L + H++ + K L A AR ARY + + A+ +N+ I HT DD ET M Sbjct: 66 LGVPHTIRTLA-LKDGPDLQARARNARYMALGDWARAQLNSIPAIALGHTKDDVSETFLM 124 Query: 138 RSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G G+ G+ Y + RP L R ++ + L +R I+W EDPSN Sbjct: 125 RLAR-----GSGVDGLATMPEYFERAGMVFKRPLLAASRAELHAMLTKRGITWSEDPSNQ 179 Query: 196 DDRFERVRVRRFVRDID 212 D RF RV++R+ +D Sbjct: 180 DPRFTRVKMRQAQATLD 196 >gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062] Length = 346 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 33/231 (14%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F SL ++ VAVSGG DS+ L L +S+ + KIK VDH LR + E Sbjct: 27 FSSSLNSEENLAVAVSGGPDSLALAYLAKCYSIKN-----KIKVKFFLVDHRLRNESTKE 81 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + ++ I V+ WK KP + + AREARY+L+S+ K N ++ H + Sbjct: 82 ATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSN 141 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLWISRPFLRCRREDIRSFLLQRN 185 D +E +R R G GL+G+ ++ Y D +L I RP L + D+ N Sbjct: 142 DLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLNILRPLLNLEKNDL------IN 190 Query: 186 IS------WCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQD 225 IS + +DPSN ++ ++R R+R + +DL L L + +D Sbjct: 191 ISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDLKKLKLTIDNLRD 241 >gi|145634599|ref|ZP_01790308.1| pyridoxine kinase [Haemophilus influenzae PittAA] gi|145268144|gb|EDK08139.1| pyridoxine kinase [Haemophilus influenzae PittAA] Length = 430 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + + L+ ++ I RP L R ++ ++ Q N+SW ED SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQKEGQLFGMS--ILRPLLSFTRNELEDYIQQENLSWVEDESNGDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D+L Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDNL 340 >gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334] gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334] Length = 436 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +L Sbjct: 17 VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ W+ S Q AAAR+ARYA ++ A +A ++MTAH DDQLET+ R Sbjct: 70 QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L G+ D + L RP L + IRS+ Q N+ +CED SN D + Sbjct: 130 R--SGDPAALIGIRADRAWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 186 ARNQLRHQV 194 >gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311] gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311] Length = 465 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 9/186 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL H + + I F+ V+H +RE + +E YV C + Sbjct: 21 LLLAISGGVDSMVLL---HLIEQLQKKIPIDFAVAHVNHKIREESIEEAAYVCTYCKQKN 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + SW+ +K + + A AR+ RY+ + K T ++TAH DDQ ET+ M+ R Sbjct: 78 IPYYETSWEEAKDK-NIEARARKFRYSFFANLMKQERYTHLLTAHHLDDQAETMLMKMVR 136 Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 K + G+ D + L RPFL +E IR++ + + I + ED +N D + Sbjct: 137 GTTLKNLAGIQLQQDFSIGKL----VRPFLIFSKEQIRNYAIDKKIMYFEDNTNYSDSYA 192 Query: 201 RVRVRR 206 R R+R Sbjct: 193 RNRMRH 198 >gi|320105913|ref|YP_004181503.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4] gi|319924434|gb|ADV81509.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4] Length = 358 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 99/218 (45%), Gaps = 21/218 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-Y 72 SL P I VA S G+DS LL+ALH R I SA+ + H R D R + Sbjct: 15 SLFRPGDRIAVAASAGADSTSLLLALHE---QRVALGIGLSAVHLHHGTRGAESDRDRDF 71 Query: 73 VSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C+RL R+A S + L AAR AR L T++ TAHT Sbjct: 72 VQALCARLDVPLRLAESDIPAAAEADGETLEEAARNARLELFRTLMLGGEVTMVATAHTQ 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV + R +G LSG+ + L + RP L R + +FL R Sbjct: 132 DDQAETVLAKLLRGAWTEG--LSGIHPILFLGEGERLPVIRPMLHLSRVQVEAFLEARGE 189 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 +WCED SNT + R R+R H L KM++F Sbjct: 190 AWCEDSSNTSTKHMRNRIR--------HDLMPKMREFN 219 >gi|70727501|ref|YP_254417.1| hypothetical protein SH2502 [Staphylococcus haemolyticus JCSC1435] gi|68448227|dbj|BAE05811.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 431 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 21/221 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++AVS G DSM L H++LS S + + + V+H LRE + E ++ C + Sbjct: 14 HIVIAVSTGVDSMSLF---HNLLSQSSRTYKQLTCLHVNHGLREASHKEEAFIEAFCKQY 70 Query: 81 RIAHSV--VSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V ++ + Q + A AR+ RY E K ++A +++TAH DDQLET++ Sbjct: 71 EITCYVKHLNLTDVVAQGKSIQADARQLRYEWFDEMMKRLDADVLLTAHHLDDQLETIFY 130 Query: 138 R---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + G+ + + + + I RP L +EDIR + + + + ED SN Sbjct: 131 RLFTGRSTRSTLGIDVQSIRN------HYTICRPLLEVSKEDIRDYQHKYQVPYYEDSSN 184 Query: 195 TDDRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVK 229 +D+++ R +R + ++ DL + + LK+K++ D++++ Sbjct: 185 SDNKYVRNDIRNRLLPAINQNADLDSTHLLKLKRWHDIQLQ 225 >gi|224475652|ref|YP_002633258.1| putative PP-loop family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420259|emb|CAL27073.1| putative PP-loop family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 426 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 17/219 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ +AVS G DSM LL L ++ + K + + V+H +RE +K+E +++ D C + Sbjct: 13 HLAIAVSTGVDSMVLLDVL---TTEFAHTYQKLTVLHVNHGIREASKEEEQFIRDYCEKH 69 Query: 81 RI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I H + + + + ARE RY H KTI A +++TAH DDQLET++ Sbjct: 70 QIPLAVHHLDLSELTAQGKSIQHTAREQRYDWFETHMKTIGANVLVTAHHQDDQLETIFY 129 Query: 138 RSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + + +G+S + L RP L + IR + + + + ED SNTD Sbjct: 130 RIMTGRSTRSPLGMSVQETRPGFKL----VRPLLNVTKRVIRQYQVTNEVPYYEDASNTD 185 Query: 197 DRFERVRVR-RFVRDIDLH-----ALYLKMKKFQDLRVK 229 + + R +R R + +ID + + LK+K++ D + + Sbjct: 186 NHYVRNDIRNRILPEIDENPQLDVSQLLKLKQWHDAQFQ 224 >gi|225445226|ref|XP_002280934.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 687 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 124/274 (45%), Gaps = 42/274 (15%) Query: 19 PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 P H I + VSGG DSM L I L++ R F AI VDH LR +KDE Sbjct: 80 PHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHGLRAESKDE 138 Query: 70 ---VRY-VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMT 124 VR+ VSD+ R IA W + KP+ G L AARE RY + +++ Sbjct: 139 ANIVRHRVSDMGIRCEIAQ--CDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQIGVLLV 196 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLR 171 AH DDQ+E +R RD +GL+GM D + ++ + RP L Sbjct: 197 AHHADDQVELFILRLSRDSGV--LGLAGMAFASQLFSTYTNYFDEASDNYSILLVRPLLE 254 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224 +ED+ N W EDP+N + F R R+R +R++ +L A+ +K Sbjct: 255 FSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISACRK-- 312 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R V+ + LI + ++V + I +IL+ Sbjct: 313 -TRAYVDQICSNLINEVVSVMAQGYAVIDLEILH 345 >gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera] Length = 707 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 124/274 (45%), Gaps = 42/274 (15%) Query: 19 PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 P H I + VSGG DSM L I L++ R F AI VDH LR +KDE Sbjct: 80 PHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHGLRAESKDE 138 Query: 70 ---VRY-VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMT 124 VR+ VSD+ R IA W + KP+ G L AARE RY + +++ Sbjct: 139 ANIVRHRVSDMGIRCEIAQ--CDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQIGVLLV 196 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLR 171 AH DDQ+E +R RD +GL+GM D + ++ + RP L Sbjct: 197 AHHADDQVELFILRLSRDSGV--LGLAGMAFASQLFSTYTNYFDEASDNYSILLVRPLLE 254 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224 +ED+ N W EDP+N + F R R+R +R++ +L A+ +K Sbjct: 255 FSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISACRK-- 312 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R V+ + LI + ++V + I +IL+ Sbjct: 313 -TRAYVDQICSNLINEVVSVMAQGYAVIDLEILH 345 >gi|15806226|ref|NP_294931.1| cell cycle protein MesJ /cytosine deaminase-like protein [Deinococcus radiodurans R1] gi|84039866|gb|AAF10777.2|AE001969_6 cell cycle protein MesJ, putative/cytosine deaminase-related protein [Deinococcus radiodurans R1] Length = 600 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 95/192 (49%), Gaps = 20/192 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LV VSGG+DS+GLL AL +V G + A +DH LR + D+ +VSD+C+RL Sbjct: 57 QVLVGVSGGADSVGLLRALLAV------GALPAVA-HLDHALRPESVDDAAWVSDLCARL 109 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V V ++ L AAR RY ++S AK A +I+TAHT DQ ETV Sbjct: 110 GVPCEVTRIDVGAVAARRNWNLEBAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAETVL 169 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G I + RP+L R +I ++L W ED SN D Sbjct: 170 MELLRG--------EGRIRGIPPQRGR-VRRPWLNVGRAEIETYLRGLGQDWREDASNAD 220 Query: 197 DRFERVRVRRFV 208 RF R +RR V Sbjct: 221 PRFTRAWLRREV 232 >gi|332307488|ref|YP_004435339.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174817|gb|AEE24071.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 466 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 104/206 (50%), Gaps = 22/206 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRY 72 SL+ H +VA S G DS + LH++ + K F SAI + H L E A ++ Sbjct: 17 SLLPSRHFVVAYSAGIDSH---VLLHALWRLQQVKKTPFTLSAIYIHHGLSENADLWQQH 73 Query: 73 VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +DVC L I A + + N K G+ A AREARYA + E A T ++IM A Sbjct: 74 CADVCDALNIEFASAKVTLDFSNGK---GIEAQAREARYAKLVEMAPT--DSVIMLAQHQ 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------LNLWISRPFLRCRREDIRSFLL 182 DDQLETV ++ +R KG LSGM D N+ RP L ++ I+ + Sbjct: 129 DDQLETVLLQLKRGAGPKG--LSGMGTYFTSDKLGASQQNVHFFRPLLDISQQQIQHYAK 186 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 ++++ W ED SN + FER +RR V Sbjct: 187 EQSLVWQEDESNQNTDFERNFIRRDV 212 >gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942] gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942] Length = 472 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 14/195 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDE-VRYVSDVC 77 A I+V VSGG DSM LL LH+ FG+ A VDH R A +E +R+V C Sbjct: 18 ATIIVGVSGGPDSMALLNFLHT-----RFGRASVIIAAHVDHSFRGAASEEDMRFVQAYC 72 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 RI V S + AAARE RY + A + AH DDQ+E Sbjct: 73 KTERITCETVKMDVSAYAEMNRLNKQAAARECRYRFFKDLMVKHQADYLALAHHGDDQVE 132 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR + G GL+G+ ++ W+ RPFL +ED+ ++ L+ ++ + D S Sbjct: 133 TMLMRLAK--GTLGAGLAGIQPVRKFETG-WLIRPFLSITKEDVLTYCLEHDVRYRTDES 189 Query: 194 NTDDRFERVRVRRFV 208 N D + R R R+ V Sbjct: 190 NAKDDYTRNRFRKAV 204 >gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi] gi|254764825|sp|C0R4S1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi] Length = 431 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 35/345 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYVSDV 76 Y + VAVSGG DS ++ LH + + K+ +A++V+H LR ++ E +V Sbjct: 17 YNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPTALTVNHGLRPESQKEADFVVSY 73 Query: 77 CSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L S +++W+ + + AR+ARY L++E K N ++ AH DDQ ET Sbjct: 74 AKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETF 133 Query: 136 YMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +R E+G G+ G+ D + ++I RP L R +I + + W ED S Sbjct: 134 LLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRS 188 Query: 194 NTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAMLIPK 240 N D ++ R R ++ D L AL++K R+ N+ V + Sbjct: 189 NYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 248 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGK 298 Y+ + + + ++I LL S + P Y S+ + + K Sbjct: 249 YIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSN 301 Query: 299 RGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRY 342 C G + N L I + + TL L E T WD R+ Sbjct: 302 VNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNEPTQWDNRF 346 >gi|228476217|ref|ZP_04060920.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119] gi|228269702|gb|EEK11201.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119] Length = 433 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 124/243 (51%), Gaps = 26/243 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ VAVS G DSM LL L L+D S+ + + V+H LR+ + +E R++ C + Sbjct: 13 HLAVAVSTGIDSMCLLYKL---LNDLSYSYQSITCLHVNHGLRDASVEEERFIKQFCKQY 69 Query: 81 RIAHSVVSWKNSKP-QTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I V S+ + G + + AR+ RY E INA +++TAH +DQLET++ Sbjct: 70 QIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIFY 129 Query: 138 -----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 RS R+ +G+ + Y +I RP + + DI+ + ++ + ED Sbjct: 130 RVFTGRSTRN----SLGMHECTERNHY----FICRPLIETYKNDIKQYQTIHHVPFYEDE 181 Query: 193 SNTDDRFERVRVR-RFVRDIDLHALY-----LKMKKFQDLRVKVNNA-VAMLIPKYLTVH 245 SN +++ R +R R + ID + + LK+K + D+++++ ++ I +Y+ ++ Sbjct: 182 SNHHNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQQRISCFIEQYVNIY 241 Query: 246 MRS 248 + Sbjct: 242 LNE 244 >gi|310816574|ref|YP_003964538.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25] gi|308755309|gb|ADO43238.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25] Length = 407 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 98/204 (48%), Gaps = 11/204 (5%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P R FV + I VAVSGGSDS+ L+ LH R + A +VDH LR Sbjct: 8 PRAIARAFVTQVT--GRIGVAVSGGSDSLAALLLLHEAAPGRIW------AATVDHNLRA 59 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + E V C+ IAH + W+ + L AR ARY+L+S A+ ++ Sbjct: 60 DSAAEAEMVQRFCAARDIAHYTLPWQPADMAGNLPHRARIARYSLLSTWAREAFLAGVVI 119 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH +DQ ET M R GLS M D + + RPF+ R+ +R L Sbjct: 120 AHNREDQAETYLMNLGRSAGID--GLSAMRDRWRVE-GVPFYRPFMALSRKALRDVLRAG 176 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 ISW +DP+N D ++RVR+RR + Sbjct: 177 AISWVDDPTNDDPHYQRVRLRRLL 200 >gi|260914165|ref|ZP_05920638.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325] gi|260631798|gb|EEX49976.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325] Length = 435 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 32/322 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+ SGG DS LL+ + +R ++ AI + H L A + +C +L Sbjct: 19 QFLIGFSGGLDSTALLLLFTKLRENRP--HLQMRAIHIHHGLSANADSWTEHCKQICEQL 76 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ G+ A AREARY IS+H + ++ TAH DQ ET ++ + Sbjct: 77 NVP-LIIEKVRVDTCNGIEAGAREARYQAISQH--ILPDEILATAHHLQDQTETFFLALK 133 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + T+ NL + RP L R ++ F+ + W ED SN D+R+E Sbjct: 134 RGSGLQGLGAMQLQSTVY---NLPVFRPLLHFTRPELEQFVQATKLDWVEDESNRDNRYE 190 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMRS 248 R F+R+ L L + F DL V+ +N +A + RS Sbjct: 191 ----RNFLRNEILPELRQRWAHF-DLAVQRSAQHCFEQQQLINELLADEFAQNFDKTDRS 245 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 Q +T LLR+ + Q+ +P +E+++ +F +S +G Sbjct: 246 FSI--QQFAQYSATKQKALLRL--WLNEWQLPMPSLVQLEQIIQDVIFARSDSNPLFQLG 301 Query: 306 RVVIDRRANFLWITRAVRNLPT 327 V+ R L++T ++ T Sbjct: 302 EKVVRRHQQKLYLTPQFTDIST 323 >gi|253996656|ref|YP_003048720.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8] gi|253983335|gb|ACT48193.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8] Length = 500 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 9/212 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F +P + + +L P +L+A+SGG DS + LH + RS + A+ V H Sbjct: 58 LFPNPHLTPDTGLPALAAPPRLLLALSGGLDSA---VLLHLLAGLRSSLGFELYALHVHH 114 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA 119 L A + C L++ S+ K N G+ AAAR RY + + + + A Sbjct: 115 GLSPNADAWAAWCEQQCQLLQVPISISRVKVNQASGLGIEAAARLLRYQALFDARQALEA 174 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DDQ ET+ ++ R G G+ G+ D + RP L R+ + + Sbjct: 175 DFVVTAHHQDDQAETLLLQLFR-----GSGVKGLSSMAAVDHTRSLMRPLLGVSRQSLHA 229 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + +Q ++WC+D SN + R+ER +R V I Sbjct: 230 YAIQHALTWCDDESNDNTRYERNFIRHDVMPI 261 >gi|199598787|ref|ZP_03212199.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001] gi|199590292|gb|EDY98386.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001] Length = 435 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +R Sbjct: 17 VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV R Sbjct: 70 HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127 Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +G SG + ++ W + RP L ++DIR++ + + +C+DPSN Sbjct: 128 -------LGRSGDPAALVGIHPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180 Query: 195 TDDRFERVRVRRFV 208 D R+ R ++R V Sbjct: 181 ADTRYARNQLRHQV 194 >gi|258509511|ref|YP_003172262.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus GG] gi|257149438|emb|CAR88411.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus GG] gi|259650779|dbj|BAI42941.1| tRNA(Ile)-lysidine synthetase [Lactobacillus rhamnosus GG] Length = 435 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +R Sbjct: 17 VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV R Sbjct: 70 HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127 Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +G SG + ++ W + RP L ++DIR++ + + +C+DPSN Sbjct: 128 -------LGRSGDPAALVGIHPDQPWRKKRLVRPLLNFSKDDIRAYANRHGLDFCDDPSN 180 Query: 195 TDDRFERVRVRRFV 208 D R+ R ++R V Sbjct: 181 ADTRYARNQLRHQV 194 >gi|61216416|sp|Q5P9R1|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 466 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 13/191 (6%) Query: 24 VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VAVSGG DS+ LL ALH ++ + ++ +H R A E R+V L Sbjct: 39 VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTGNHGFRAEADHETRFVQKRAVAL 93 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ W + + ARE RY+L+ + + ++TAH DQ ETV M + Sbjct: 94 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 153 Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ GLSGM + ++ ++ I RP L R++I + Q+ +SW EDPSN D ++ Sbjct: 154 RG---SGIDGLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKY 209 Query: 200 ERVRVRRFVRD 210 R R + + Sbjct: 210 RRTFFRNLIAE 220 >gi|32491148|ref|NP_871402.1| hypothetical protein WGLp399 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|61217353|sp|Q8D2F5|TILS_WIGBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25166355|dbj|BAC24545.1| mesJ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 400 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 111/202 (54%), Gaps = 15/202 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLL----IALHSVLSDRSFGK--IKFSAISVDHCLRET 65 F + + Y ++A SGG DS LL + + + ++ +F K KF A+ ++H + + Sbjct: 5 FFKEISYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNICKE 64 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTIN-ATLIM 123 +K + D C + ++ ++ S G+ ++AR RY AL S+ +N +++ Sbjct: 65 SKYWSNHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKALFSD----LNPEEVLI 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ+ET+ + +R +G +SGM +D ++ I RP L C++EDI+ + ++ Sbjct: 121 TAHHQDDQIETILLSLKRGSGPRG--ISGMQSIKKFDSHI-IKRPLLHCKKEDIKLYAIK 177 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 N++W +D SN + +F+R +R Sbjct: 178 HNLNWIDDKSNLNIKFDRNFLR 199 >gi|167856269|ref|ZP_02479001.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755] gi|167852593|gb|EDS23875.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755] Length = 422 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 25/307 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + +SGG DS + LH R +K AI + H L A + +C + I Sbjct: 20 FIGLSGGVDSA---VLLHLFAQARQALNLKLRAIHIHHGLNPNADSWATFCEQLCEQWAI 76 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V + Q GL A AR ARY I +H + ++ TAH DDQ+ET ++ +R Sbjct: 77 PFTVCKVQVQGKQ-GLEANARTARYQAIQQHIQ--RNEMLATAHHLDDQVETFFLALKRG 133 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G+G + + N+ I RP L + DI ++ Q + W ED SN + F+ Sbjct: 134 SGIQGLG---AMQAVSFLQNIAIFRPLLSFNKTDILAYAEQHQLEWIEDESNFNTDFD-- 188 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNI 259 R F+R L L + ++F + + + A LI + L + S + L+I Sbjct: 189 --RNFLRQTALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELAS--RLQNGGLDI 244 Query: 260 DSTLLFYLLR----VSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRR 312 F LL+ V + +++P +E+++ L K+ K V + + +I R Sbjct: 245 TGFEHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRY 304 Query: 313 ANFLWIT 319 ++IT Sbjct: 305 QQQIFIT 311 >gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211] gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211] Length = 299 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 18/199 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DS+ L L + S + +K+ VDH LR + E + V + I Sbjct: 1 MAVSGGPDSLALSF-LTKIYSLKKSLDVKY--FLVDHRLRINSTIEAKSVQKLLKNFYIN 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 ++++WK SKP+ + + +R+ RY L+ + A I+ H DD E ++R R Sbjct: 58 LNILTWKGSKPEKNIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFENFFIRILR-- 115 Query: 144 AEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDD 197 G GL+G+ +T +NL RP L + D+ L + + S+ DPSN +D Sbjct: 116 ---GSGLNGLVSLDRETQRDTVNLI--RPLLEINKNDL--VYLSKYVFGSYVNDPSNEND 168 Query: 198 RFERVRVRRFVRDIDLHAL 216 +F+RV+VR F+ + L L Sbjct: 169 KFKRVKVRNFINQLGLEGL 187 >gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [alpha proteobacterium BAL199] gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [alpha proteobacterium BAL199] Length = 426 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 +VDH LR A E V VC+ H ++ W +KP +GL AAAR ARY L+++ + Sbjct: 22 TVDHGLRPEAVVEAGRVGQVCAMAGRPHRILRWLGTKPGSGLQAAARRARYDLMAQACRD 81 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 ++ AH +DQ ETV R R GL+GM +D + + RP L + Sbjct: 82 DGVVDLLLAHHLEDQAETVLHRIDRGTGPD--GLAGMARVRAFD-GVRLLRPLLDVPKVR 138 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + + W EDPSN+D RF R +R+ Sbjct: 139 LLATCRSVGVEWAEDPSNSDPRFARTELRQLA 170 >gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries] gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries] Length = 501 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 11/190 (5%) Query: 24 VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VAVSGG DS+ LL ALH ++ + ++ +H R A E R+V L Sbjct: 74 VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTGNHGFRAEADHETRFVQKRAVAL 128 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ W + + ARE RY+L+ + + ++TAH DQ ETV M + Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLSGM + ++ ++ I RP L R++I + Q+ +SW EDPSN D ++ Sbjct: 189 RGSGID--GLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKYR 245 Query: 201 RVRVRRFVRD 210 R R + + Sbjct: 246 RTFFRNLIAE 255 >gi|219871527|ref|YP_002475902.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165] gi|219691731|gb|ACL32954.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165] Length = 422 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 25/306 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + +SGG DS+ + LH R +K AI + H L A + +C + I Sbjct: 21 IGLSGGVDSV---VLLHLFAQARQALNLKLRAIHIHHGLSPNADSWATFCEQLCEQWAIP 77 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + Q GL A AR ARY +I +H + ++ TAH DDQ+ET ++ +R Sbjct: 78 LTVCKVQVQGKQ-GLEANARTARYQVIQQHIQ--RNEMLATAHHLDDQVETFFLALKRGS 134 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+G + + N+ I RP L + DI ++ Q + W ED SN + F+ Sbjct: 135 GIQGLG---AMQAVSFLQNIAIFRPLLSFNKTDILAYAEQYQLEWIEDESNFNTDFD--- 188 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNID 260 R F+R L L + ++F + + + A LI + L + S + L+I Sbjct: 189 -RNFLRQTALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELAS--RLQNGGLDIT 245 Query: 261 STLLFYLLR----VSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRA 313 F LL+ V + +++P +E+++ L K+ K V + + +I R Sbjct: 246 GFEHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQ 305 Query: 314 NFLWIT 319 ++IT Sbjct: 306 QQIFIT 311 >gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00] gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Lawsonia intracellularis PHE/MN1-00] Length = 341 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 16/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 ++V SGG DSM L + LH + D F + DH LR +KD+ +V + Sbjct: 40 VIVGCSGGVDSMALALILHCLGIDVVFAHM-------DHQLRAESKDDANHVKSFAAALD 92 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R I+ +S K + G+ AR+ RY + + K A I T H +D E + + Sbjct: 93 RRCIISRVDISGLAIKYKKGIEETARQERYCFLEQVRKEYGAQWIATGHHLNDLSEDILL 152 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G G+ D ++ RP L RR + SFL +NISW ED SN D Sbjct: 153 RLLR-----GTGWPGLAGMKAVDKKRYLLRPLLTTRRTLLVSFLSSQNISWVEDNSNKDI 207 Query: 198 RFERVRVRRFV 208 F+R R+R + Sbjct: 208 TFKRNRIRHTI 218 >gi|320536077|ref|ZP_08036134.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421] gi|320147077|gb|EFW38636.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421] Length = 452 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 24/209 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCSR 79 +L+AVSGG+DS+ LL ALH++ +D + + ++V+H +RE K + +VS C+ Sbjct: 25 LLIAVSGGADSLALLTALHTINTDFNH---RLFVVTVNHNIREKNETKADADFVSSFCAH 81 Query: 80 LR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L+ I V S +TG AAR RY E A ++A I+TAH +D Sbjct: 82 LQPPVPCIVKTIPAGSVKELASIRKTGTEDAARILRYRAFEEAAIEVSADFILTAHNKND 141 Query: 131 QLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET+ MR + + K + G+ + L RP L R I +FL QRNI W Sbjct: 142 MYETILMRLFQGGSPKSIAGIPLVRGKYL--------RPLLTVERASIEAFLRQRNIFWR 193 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYL 218 ED +N + + R ++R + + LH++++ Sbjct: 194 EDKTNFEQVYLRNKIRHTLIPV-LHSVFV 221 >gi|315127141|ref|YP_004069144.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913] gi|315015655|gb|ADT68993.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913] Length = 436 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 11/186 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI- 82 VA+SGG DS+ LL +H++ + ++ SAI V+H L + A ++ C +L I Sbjct: 27 VALSGGVDSVVLLQVMHAL--KQQCPQLDLSAIYVNHGLSDNAHHWRQFCHARCEQLSID 84 Query: 83 --AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A +V+ K +T + A AREARY + EH+ + ++I+ +DQ+ET +R + Sbjct: 85 FKAANVII--EPKSRTSIEAQAREARYQALDEHSPS--DSVILLGQHLNDQVETFLLRLK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+G M T + + RP L +R DI +F Q NIS D SN+++RF+ Sbjct: 141 RGSGLKGLG--AMQQTRVLESGRECYRPLLGVKRSDIEAFAQQFNISHITDESNSNERFD 198 Query: 201 RVRVRR 206 R +R+ Sbjct: 199 RNFLRQ 204 >gi|15639364|ref|NP_218813.1| hypothetical protein TP0373 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025606|ref|YP_001933378.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum SS14] gi|6136519|sp|O83388|TILS_TREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695552|sp|B2S2X0|TILS_TREPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3322651|gb|AAC65358.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018181|gb|ACD70799.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum SS14] Length = 477 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 20/197 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 P+ +LVAVSGG+DS+ LL A H + D FG + A++VDH LR + + R+V +C Sbjct: 28 PSCLLVAVSGGADSLALLYAAHELAPD--FG-VCACAVTVDHSLRAQEGALDARFVRALC 84 Query: 78 SRL---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +R +I+ V G+ AAR RY + A A +++TAHT Sbjct: 85 ARFSPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTR 144 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ MR + A + I ++ RP L+ R + FL R + W Sbjct: 145 DDQYETLLMRLFQGAAASAL------QGIRAARGRYV-RPLLKVSRTCVEDFLQTRGVRW 197 Query: 189 CEDPSNTDDRFERVRVR 205 ED SNT ++ R R+R Sbjct: 198 REDASNTCRKYVRNRIR 214 >gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860] gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860] Length = 497 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + WK+ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2] gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2] Length = 462 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + WK+ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|300715415|ref|YP_003740218.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661] gi|299061251|emb|CAX58360.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661] Length = 433 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 7/201 (3%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + L H+LV SGG DS LL L ++ + R G + AI + H L A Sbjct: 2 AMHALAQHLAGHQHLLVGFSGGLDSTVLLHQLVTLRAQR--GDLHLRAIHIHHGLNPLAD 59 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V + +C R ++ VV+ + G+ AAAR+ARY S+H + A ++TA Sbjct: 60 GWVEHCQQLCQRWQVELVVVNVTLDSREKGVEAAARDARYQAFSDHLRP--AECLLTAQH 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET + +R GL+GM L + + RP L R + ++ ++ +S Sbjct: 118 LDDQCETFLLALKRGSGPA--GLAGMPVQSLLGTHT-LLRPLLLQTRGQLEAWAVEHALS 174 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W ED SN D RF+R +R+ V Sbjct: 175 WIEDDSNQDTRFDRNFLRQKV 195 >gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929] gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929] Length = 460 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 9/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVS G DSM LL L + R+ + K VDH LR+ + +E RY+S+ CS Sbjct: 23 VVVAVSTGVDSMTLLYMLQHL--PRAV-RPKIIVAYVDHQLRDQSVEETRYISNYCSEHG 79 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W K+ P+ G+ AAAR RY K +T ++TAH DD +ETV M+ Sbjct: 80 LLLKQAVWPKDDHPKVGIEAAARTFRYRFFERVLKETGSTCLLTAHHGDDLVETVIMKLV 139 Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+G+ +T + D N+ RP L ++ + SF I W ED +N Sbjct: 140 R--GGQLASLTGIRETRSFADANM--IRPLLSFSKQQLESFAQTTGIRWFEDETNQQLAV 195 Query: 200 ERVRVRRFV 208 ER R+R V Sbjct: 196 ERNRIRHGV 204 >gi|323697897|ref|ZP_08109809.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. ND132] gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132] Length = 336 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 12/188 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS LL+ LH + S F A+ +DH LR + D+ + +C RL Sbjct: 43 VLVGLSGGVDSTALLLVLHYLSSRADF---TVGAVHLDHQLRPESADDATFARALCERLG 99 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V V+ + GL A REARYAL +E ++ I H DD E V M Sbjct: 100 IDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDLSEDVLM 159 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G G+ +D + RP L + +++F+ + W ED SN D Sbjct: 160 RLIR-----GTGWPGLSGMAGHDPARGLIRPLLLIPKSTLKAFVTHLGVPWREDASNADP 214 Query: 198 RFERVRVR 205 R RVR Sbjct: 215 AMTRNRVR 222 >gi|61216750|sp|Q9RV23|TILS_DEIRA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 582 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 29/196 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LV VSGG+DS+GLL AL +V G + A +DH LR + D+ +VSD+C+RL Sbjct: 40 QVLVGVSGGADSVGLLRALLAV------GALPAVA-HLDHALRPESVDDAAWVSDLCARL 92 Query: 81 RIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + +V + +N + AAR RY ++S AK A +I+TAHT DQ Sbjct: 93 GVPCEVTRIDVGAVAARRNWN-----LEAARRLRYDVLSRAAKHSGAEVILTAHTRRDQA 147 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M R G I + RP+L R +I ++L W ED Sbjct: 148 ETVLMELLRG--------EGRIRGIPPQRGR-VRRPWLNVGRAEIETYLRGLGQDWREDA 198 Query: 193 SNTDDRFERVRVRRFV 208 SN D RF R +RR V Sbjct: 199 SNADPRFTRAWLRREV 214 >gi|313905490|ref|ZP_07838854.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6] gi|313469674|gb|EFR65012.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6] Length = 507 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 24/204 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 + V +SGG+DS+ LL+ L +L S G+ + +A+ ++H LR + A+D+ R+V ++C+ Sbjct: 23 VCVGLSGGADSVALLLVLKEILKMGSVGEYRLAAVHINHNLRGQAAEDDSRFVRELCANR 82 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL--------IMTAHTF 128 L+I V+ + GL A RE R+ + AK + I AH Sbjct: 83 EIPLKIYSCPVAEYAGVRKIGLEEAGREVRHEKFALAAKEFAEEMEADPAKAKIALAHHA 142 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQ ET+ R+ R G LSG+ L +L L RP L R++I ++L Q+ Sbjct: 143 DDQAETLLFRAAR-----GSSLSGLAGIRPSATLGELLLI--RPLLSVTRDEIEAWLRQK 195 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 ++W D +N D+R+ R +R V Sbjct: 196 GVNWRTDETNADERYARNAIRGTV 219 >gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol] gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol] Length = 462 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V+ +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVVEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|314937284|ref|ZP_07844626.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis C80] gi|313654580|gb|EFS18330.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis C80] Length = 431 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 26/243 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ VAVS G DSM LL L L+D S + + V+H LR+ + +E R++ C + Sbjct: 11 HLAVAVSTGIDSMCLLYKL---LNDLSHSYQSITCLHVNHGLRDASVEEERFIKQFCKQY 67 Query: 81 RIAHSVVSWKNSKP-QTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I V S+ + G + + AR+ RY E INA +++TAH +DQLET++ Sbjct: 68 QIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIFY 127 Query: 138 -----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 RS R+ +G+ + Y +I RP + + DI+ + ++ + ED Sbjct: 128 RVFTGRSTRN----SLGMHECTERNHY----FICRPLIETYKNDIKQYQTIHHVPFYEDE 179 Query: 193 SNTDDRFERVRVR-RFVRDIDLHALY-----LKMKKFQDLRVKVNN-AVAMLIPKYLTVH 245 SN +++ R +R R + ID + + LK+K + D+++++ ++ I +++ +H Sbjct: 180 SNHHNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQRRISCFIEQHVNIH 239 Query: 246 MRS 248 + Sbjct: 240 LNE 242 >gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC 11741] gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC 11741] Length = 453 Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVS G DSM LL + L VL+ I+ + +DH LRE +K+E +++ + C Sbjct: 27 VLLAVSTGVDSMVLLSGMLKLSKVLN------IEINVAYIDHQLREQSKEETKFIKEFCF 80 Query: 79 RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V W K P + AAARE RY + K N ++TAH DDQ ET M Sbjct: 81 ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R L + ++ + I RP L +++I + Q I + ED +N D Sbjct: 141 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 198 Query: 198 RFERVRVRRFV 208 ++R R+R + Sbjct: 199 DYQRNRLRHHI 209 >gi|268590514|ref|ZP_06124735.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131] gi|291314100|gb|EFE54553.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131] Length = 450 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 39/325 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV SGG DS LL AL+ + R ++ AI + H L A + ++ + +CS+ Sbjct: 22 ILVGFSGGIDSTVLLHALYLIRQQR-LPSLEIRAIHIHHGLNRKANEWEQHCAQLCSQWD 80 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I H VV Q G+ AAAREARY E + +++TA DDQ ET + Sbjct: 81 IPFICRHVVVD----SSQKGIEAAAREARYQAYREELQ--EGEVLVTAQHLDDQAETFML 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +R G LS M + + + + W+ RP L R + +++ ++ +SW ED SN Sbjct: 135 ALKRGSGPAG--LSSMPELLSFSACCGSTWLLRPLLSTPRIALEAYMQEQQLSWVEDDSN 192 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRS 248 DDR++ R F+R LH + +++ V + A+ L+ + L + Sbjct: 193 QDDRYD----RNFLR---LHIMPTLSERWPHFSHAVARSAALCAEQESLLDELLKETLEG 245 Query: 249 IIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 ++ D+ S+ L+R + Q+ +P + +ER+ + ++ Sbjct: 246 MMDYRGGLFIDDLQGCSSSKRNALIRRWVGL--HQLPMPPFNQLERIWQEVALARQDADP 303 Query: 304 I---GRVVIDRRANFLWITRAVRNL 325 I G+ I R LW+ + + +L Sbjct: 304 ICRLGQFEIRRYQGALWVVKRINSL 328 >gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris HaA2] gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris HaA2] Length = 346 Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 5/206 (2%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA I++AVSGG DS+ L+ R G F +++DH L Sbjct: 9 ISAREASSLFADWKAVPA-IVLAVSGGPDSLALMWLAARWRKARKRGPALF-VVTIDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V L + H + W KP TGL AAAR ARY L+++ AK + A I Sbjct: 67 RPEAAREARSVKQFARTLGLPHRTLRWTGDKPATGLPAAARAARYRLLAKAAKAVGAAHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M D + + RP L ++ + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMPRETARDGAVLV-RPLLDVSKQRLVATLD 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 + I + DPSN D RF R R+R + Sbjct: 184 RAKIGFAVDPSNADPRFTRPRLRELM 209 >gi|325955979|ref|YP_004286589.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC] gi|325332544|gb|ADZ06452.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC] Length = 423 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA S G DSM LL L + K++ A DH LR +K+E + + + C + Sbjct: 28 FLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEYCKKYD 80 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +P G+ AAAR+ARYA +++ AK A ++TAH DD LE + ++ Sbjct: 81 IPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENILLKFI 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M S +++ ++L RP L ++++ + + I + D +N +D Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVSLL--RPLLAYSKQELFEYDRKNGIEFITDSTNNEDETM 197 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 198 RNRLRHHV 205 >gi|315037515|ref|YP_004031083.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112] gi|312275648|gb|ADQ58288.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112] gi|327182811|gb|AEA31258.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1118] Length = 423 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA S G DSM LL L + K++ A DH LR +K+E + + + C + Sbjct: 28 FLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEYCKKYD 80 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +P G+ AAAR+ARYA +++ AK A ++TAH DD LE + ++ Sbjct: 81 IPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENILLKFI 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M S +++ ++L RP L ++++ + + I + D +N +D Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVSLL--RPLLAYSKQELFEYDRKNGIEFITDSTNNEDETM 197 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 198 RNRLRHHV 205 >gi|170717655|ref|YP_001784732.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336] gi|226695541|sp|B0UUD3|TILS_HAES2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|168825784|gb|ACA31155.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336] Length = 427 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 10/190 (5%) Query: 18 YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +P+H +L+ SGG DS LL L + + + AI + H L + A + + Sbjct: 14 FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQPH--LSLRAIHIHHGLSQNADNWAIHCRQ 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C +L I+ + P+ G+ A AREARY I+ H + + +++TAH DQ ET Sbjct: 72 ICQQLDISF-LCEKVTINPRKGIEADAREARYQAIANHLQ--DNEILVTAHHQQDQTETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R +G+G + + NL I RP L C ++ + + +SW ED SN Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTKQQLEQYAKTEKLSWIEDESNA 185 Query: 196 DDRFERVRVR 205 D+R+ER +R Sbjct: 186 DNRYERNFLR 195 >gi|328478101|gb|EGF47969.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus MTCC 5462] Length = 402 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V +R Sbjct: 17 VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLET+ R Sbjct: 70 HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETILFR-- 127 Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +G SG + + W + RP L ++DIR++ + + +C+DPSN Sbjct: 128 -------LGRSGDPAALVGIRPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180 Query: 195 TDDRFERVRVRRFV 208 D R+ R ++R V Sbjct: 181 ADTRYARNQLRHQV 194 >gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13] gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13] Length = 473 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 16/211 (7%) Query: 7 ESVRFFVRSL-VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E+V F+ + P+H ++V VSGG+DSMGLL L S+ + ++K VDH R Sbjct: 3 ETVSTFIDKFDLLPSHSTVVVGVSGGADSMGLLHYLDSI---KEAKRLKLVVAHVDHMFR 59 Query: 64 ETAKDE-VRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +E + +V + C + I V +++N K + + AARE RYA + + Sbjct: 60 GAESEEDMDFVKEQCEKREILFEAEQIDVSAYQNEK-KLSVQVAARECRYAFYEKVMRKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++ H DDQ+ET+ MR R + G +G+ + + I RPFL + +I Sbjct: 119 RADVLALGHHADDQVETILMRLGRGSSMSGH--AGILPKRTFGAGV-IVRPFLTVTKSEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +L + + DPSN D + R R+R + Sbjct: 176 MEYLKANEVPYRHDPSNDKDAYRRNRLRHHI 206 >gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354] Length = 288 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 15/169 (8%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + A +VDH LR + DE +V+ VC L I H+ + S L A AR RY + Sbjct: 10 RVRAATVDHGLRPESADEAAFVARVCEGLGIPHATLRVDVSPGN--LQANARAVRYEALG 67 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NL 163 H + + A++ TAH DDQ ET+ MR R G GL+G+ + + + Sbjct: 68 CHFEQVGASVFATAHHADDQAETLLMRLNR-----GSGLAGLAGVRPWSVFFPEGIIEEM 122 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + RP L RR ++ + + I +DPSN+DD F+R R+R+ + D + Sbjct: 123 VMVRPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAE 171 >gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2] gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2] Length = 377 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 22 ILVAVSGGSDSMGLLIALHS---VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+AVSGG DS+ L++ +R +VDH LR + E V+ Sbjct: 51 ILLAVSGGPDSIALMLLASRWARAREERGLAAPLLHVSTVDHGLRTGSGAEAEAVAAWAK 110 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H + W KP+T + AREARY L+ A + A +I TAH DDQ ET+ R Sbjct: 111 AAGLPHETLIWNGGKPKTRIQERAREARYDLLCACAARLGADVIATAHHADDQAETILFR 170 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL+GM + L SRP L C + + ++ R + DPSN + Sbjct: 171 LTRGSGPG--GLAGM-SARFFRHGLIHSRPLLSCDKAALIAYCEARRHDFFADPSNCNPA 227 Query: 199 FERVRVRRFVR 209 F R R+R ++ Sbjct: 228 FARTRMRALLK 238 >gi|113461077|ref|YP_719145.1| cell-cycle protein [Haemophilus somnus 129PT] gi|123132098|sp|Q0I3D1|TILS_HAES1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|112823120|gb|ABI25209.1| cell-cycle protein [Haemophilus somnus 129PT] Length = 427 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 10/190 (5%) Query: 18 YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +P+H +L+ SGG DS LL L + + + AI + H L + A + + Sbjct: 14 FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQPH--LSLRAIHIHHGLSQNADNWAIHCRQ 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C +L I+ + P+ G+ A AREARY I+ H + + +++TAH DQ ET Sbjct: 72 ICQQLDISF-LCEKVTINPRKGIEADAREARYQAIANHLQ--DNEILVTAHHQQDQTETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R +G+G + + NL I RP L C R+ + + +SW ED SN Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTRQQLEQYAKTEKLSWIEDESNA 185 Query: 196 DDRFERVRVR 205 D+R++R +R Sbjct: 186 DNRYDRNFLR 195 >gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109] gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109] gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635] gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635] gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645] gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322] gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712] gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613] gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411] gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512] gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516] gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322] gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712] gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613] gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411] gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512] gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583] gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11] gi|61216623|sp|Q839B3|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583] gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6] gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188] gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96] gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis AR01/DG] gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96] gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104] gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22] gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104] gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22] gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B] gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|237745448|ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] gi|229376799|gb|EEO26890.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] Length = 468 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S PA I +A SGG DS LL H ++++ I+ A + H L A + + Sbjct: 33 SSAVPA-IAIAYSGGLDSTVLLHCAHRFAAEKN---IRLFAFHIHHGLNRKADAWLNHCE 88 Query: 75 DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C I + + G+ A AR RYA + E + TL++TAH DDQ+E Sbjct: 89 AACMEQGIRFESRKVRVDRGSGDGIEAEARSKRYAALGEMCRKNEVTLLLTAHHEDDQVE 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCD--------TILYDLNLWISRPFLRCRREDIRSFLLQRN 185 TV M R G G++G+ +L D W+ RPFL RE++ S+ +N Sbjct: 149 TVLMHLMR-----GTGIAGLAGMDSVTQAPELLGDTKTWVGRPFLSLSREELASWAKAKN 203 Query: 186 ISWCEDPSNTDDRFERVRVR 205 +S ED SN D ++ R +R Sbjct: 204 LSCVEDDSNNDTKYTRNAIR 223 >gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|299139540|ref|ZP_07032714.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8] gi|298598468|gb|EFI54632.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8] Length = 395 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 26/209 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 + VA+SGG+DS LL+AL + + + SA V H LR E DEV +V ++C R Sbjct: 44 VCVAISGGADSTALLLALKEANAAKESLGVVVSAAHVHHGLRGGEADDDEV-FVRELCER 102 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + H + + + + G+ AARE RY + I TAHT DDQ ETV Sbjct: 103 LAVPLTVFHVDTAARQAAEREGVEEAARELRYEALRGLLPEGRVDAIATAHTLDDQAETV 162 Query: 136 YMRSQRDY-----------------AEKGMGLS--GMCDTILYDLNLWISRPFLRCRRED 176 M+ R E+G+GL G + + + RP L RR + Sbjct: 163 MMKLLRGAWTEGLGGISPVVQGLGIREQGLGLGVEGSGPRVQGSVGGRVVRPLLGVRRAE 222 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + +FL R W D SN D R RVR Sbjct: 223 VEAFLQARGQVWRTDSSNRDLELTRNRVR 251 >gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 452 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVS G DSM LL + L VL ++ + +DH LRE +K+E +++ + C Sbjct: 26 VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINVAYIDHQLREQSKEETKFIKEFCF 79 Query: 79 RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V W K P + AAARE RY + K N ++TAH DDQ ET M Sbjct: 80 ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R L + ++ + I RP L +++I + Q I + ED +N D Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197 Query: 198 RFERVRVRRFV 208 ++R R+R + Sbjct: 198 DYQRNRLRHHI 208 >gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3] gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704] gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3] gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|238019645|ref|ZP_04600071.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748] gi|237863686|gb|EEP64976.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748] Length = 332 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 12/193 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DSM LL LH + + R K VDHC+R +KDEV ++ L Sbjct: 26 ILVACSGGPDSMALLYLLHDIATHR-HTTYKIGVAIVDHCIRPESKDEVLWLQHQVEELG 84 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ + + + R+ RY ++E A++ I AH DDQ E++ Sbjct: 85 LPFYSATFDVPSLSKEHKKSEETIGRQVRYQWLNEIAQSEGYDYISVAHHKDDQAESILA 144 Query: 138 RSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G GL+G+ + D ++ + RP L +E++ ++L R +++C D +N Sbjct: 145 HLIR-----GTGLNGLTGMAVVSNDYDIPVIRPLLDVPKEELLAYLADRKLTYCIDSTND 199 Query: 196 DDRFERVRVRRFV 208 D R++R ++R V Sbjct: 200 DIRYQRNKIRHRV 212 >gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248] gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248] gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017] gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1] gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200] gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855] gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134] gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510] gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510] Length = 448 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 169/383 (44%), Gaps = 21/383 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ L + L +++ A++VDH LR + E V +RL Sbjct: 28 IAVGVSGGGDSVALALLLRHWVAEHGG---SLLALTVDHGLRPDSAAEASAVGRTMARLD 84 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H V+ W+ KP TGL AAAR AR+ L++ + AH DDQ ETV +R R Sbjct: 85 VPHHVLRWEGEKPSTGLQAAARAARHRLLATACAEAGILHLALAHHRDDQAETVLLRLAR 144 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL+GM + D + I RP L + + + + W EDPSN + RF R Sbjct: 145 GSGVD--GLAGMA-PVRADGPVRIIRPLLGFPHDRLLATCRAEGVGWIEDPSNANPRFAR 201 Query: 202 VRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R+R +D L ++ R + A A L+ T+H I +++ Sbjct: 202 ARLRAASDLLGGEGLDADRLSEVARRAGRARAALEQATAALLADAATIHAEGWITLARGP 261 Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 L+ + + L + A+ GG + P ++ER++ L +G+ G + G VV RR Sbjct: 262 LSAAPAEIALRALGRTLAVVGGAAAHPVRDEALERLLGTLAAGRGGTLG-GCVVRHRRGA 320 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQF-----QNLSDSLIQIGPQSYRK--ADVPSG 367 + L + P +WDGR+ N ++ +G +R+ A +G Sbjct: 321 IMIAREPAAVTERLTVPPGGRVLWDGRFDLWLSPRWNRPVTVAALGAAGWREWVARPAAG 380 Query: 368 IPPIIAQRALSSMPSKEGGKPLL 390 PP + S+PS G LL Sbjct: 381 RPPDLPVPVRESLPSLWSGTELL 403 >gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus faecalis OG1RF] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Enterococcus faecalis T8] gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Enterococcus faecalis T8] Length = 500 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 59 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 115 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 116 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 175 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 176 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 229 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 230 YLRNRLRNQV 239 >gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC 29200] gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC 29200] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346] Length = 497 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5] gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecalis JH1] gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1] gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5] gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecalis JH1] gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1] Length = 462 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT 5713] Length = 456 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVS G DSM LL + L VL ++ + +DH LRE +K+E +++ + C Sbjct: 26 VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINVAYIDHQLREQSKEETKFIKEFCF 79 Query: 79 RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V W K P + AAARE RY + K N ++TAH DDQ ET M Sbjct: 80 ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R L + ++ + I RP L +++I + Q I + ED +N D Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197 Query: 198 RFERVRVRRFV 208 ++R R+R + Sbjct: 198 DYQRNRLRHHI 208 >gi|145632651|ref|ZP_01788385.1| DNA mismatch repair protein [Haemophilus influenzae 3655] gi|144986846|gb|EDJ93398.1| DNA mismatch repair protein [Haemophilus influenzae 3655] Length = 430 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 34/343 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS LL + R + AI + H L A ++ D+C + Sbjct: 19 FLIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+G + ++L+ + I RP L R + + + ++W D SN D+RF+ Sbjct: 136 RGSGLKGLG-AMQQQSVLFGMP--IFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247 Query: 261 STLLF---------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 L F LLR+ A Q+ +P R + +++ +F K + V Sbjct: 248 KLLQFRQYPPAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKV 305 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 I R + L++T+ +L L E+ T+ NL D+L Sbjct: 306 IRRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDNL 340 >gi|328463465|gb|EGF35116.1| tRNA(Ile)-lysidine synthase [Lactobacillus helveticus MTCC 5463] Length = 418 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ + F K A +H LR +++E +++ CS Sbjct: 19 LLVAASSGPDSMALLDMLRNLQDNAHF---KLMAAHFNHQLRADSEEESKFLKKYCSENH 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + ++ Sbjct: 76 VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M M + + + RP L + ++ + + I + D +N D Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 193 RNRLRHHV 200 >gi|330998820|ref|ZP_08322547.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT 11859] gi|329576034|gb|EGG57553.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT 11859] Length = 478 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++VA SGG DS LL A+ S L +S+G+I +A+ V H L + A + + + Sbjct: 47 PINVIVAFSGGLDSSVLLYAV-SQLKGKSYGEI--TAVHVHHGLSKHANEWAEFCEERAK 103 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + G A AR+ RY ++ E A+ A I+TAH DDQLET ++ Sbjct: 104 KCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKAAADAILTAHHLDDQLETFLIQ 163 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL+ M + D I RP L +R ++ F R I W ED SN D + Sbjct: 164 WMRGSGP--AGLAAMPPLLRKD-GCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDTK 220 Query: 199 FERVRVR 205 + R +R Sbjct: 221 YLRNAIR 227 >gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1] gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98] gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1] gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98] Length = 462 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|42521051|ref|NP_966966.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|61217299|sp|Q73FR9|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 431 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 143/348 (41%), Gaps = 35/348 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYV 73 S Y + VAVSGG DS ++ LH + + K+ A++V+H LR ++ E +V Sbjct: 14 SAFYNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPIALTVNHGLRPESQKEADFV 70 Query: 74 SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L S +++W+ + + AR+ARY L++E K N ++ AH DDQ Sbjct: 71 VSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET +R E+G G+ G+ D + + I RP L R +I + + W E Sbjct: 131 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIDIFRPLLNFSRSEIEKYAKLHRLKWIE 185 Query: 191 DPSNTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAML 237 D SN D ++ R R ++ D L AL++K R+ N+ V + Sbjct: 186 DRSNHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVH 245 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLK 295 Y+ + + + ++I LL S + P Y S+ + + K Sbjct: 246 DLGYIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQK 298 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP-EETTVWDGRY 342 C G + N L I + R + P E T WD R+ Sbjct: 299 DSNVNCTLSGCKIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRF 346 >gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141] Length = 497 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|332703890|ref|ZP_08423978.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis Bay] gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis Bay] Length = 340 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 93/202 (46%), Gaps = 17/202 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS LL L L+ R I A VDH LR + + Y ++C+ Sbjct: 38 LLVALSGGADSTALLYCLR-YLAPRMC--ISLLAAHVDHGLRPESGQDAAYCRELCAAQN 94 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A VS + G+ A R ARY + NA L++TAH +D E M Sbjct: 95 VPLYEAKLDVSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNADLLLTAHHLNDLAEDALM 154 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G + YD + RP L ++R FL SW EDPSNTD Sbjct: 155 RLIR-----GTGWPELAGMPAYDPQRNLLRPLLLTPGTNLREFLTNIGASWREDPSNTDP 209 Query: 198 RFERVRVRRFVRDIDLHALYLK 219 F R RVR +D+ L+L+ Sbjct: 210 AFLRNRVR-----LDILPLFLR 226 >gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043] gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312] Length = 497 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|291059764|gb|ADD72499.1| tRNA(Ile)-lysidine synthase [Treponema pallidum subsp. pallidum str. Chicago] Length = 447 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 20/194 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVAVSGG+DS+ LL A H + D FG + A++VDH LR + + R+V +C+R Sbjct: 1 MLVAVSGGADSLALLYAAHELAPD--FG-VCACAVTVDHSLRAQEGALDARFVRALCARF 57 Query: 81 ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +I+ V G+ AAR RY + A A +++TAHT DDQ Sbjct: 58 SPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTRDDQ 117 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ MR + A + I ++ RP L+ R + FL R + W ED Sbjct: 118 YETLLMRLFQGAAASAL------QGIRAARGRYV-RPLLKVSRTCVEDFLQTRGVRWRED 170 Query: 192 PSNTDDRFERVRVR 205 SNT ++ R R+R Sbjct: 171 ASNTCRKYVRNRIR 184 >gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118] gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118] Length = 452 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVS G DSM LL + L VL ++ + +DH LRE +K+E +++ + C Sbjct: 26 VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINIAYIDHQLREQSKEETKFIKEFCF 79 Query: 79 RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V W K P + AAARE RY + K N ++TAH DDQ ET M Sbjct: 80 ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R L + ++ + I RP L +++I + Q I + ED +N D Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197 Query: 198 RFERVRVRRFV 208 ++R R+R + Sbjct: 198 DYQRNRLRHHI 208 >gi|260582332|ref|ZP_05850125.1| DNA mismatch repair protein [Haemophilus influenzae NT127] gi|260094700|gb|EEW78595.1| DNA mismatch repair protein [Haemophilus influenzae NT127] Length = 430 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 87/341 (25%), Positives = 153/341 (44%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L + A + ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADNWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + + Q ++W D SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQQEKLNWITDESNKDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + I I N Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D L Sbjct: 308 RYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDL 340 >gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11] gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Enterococcus sp. 7L76] gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11] Length = 462 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|229551622|ref|ZP_04440347.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus LMS2-1] gi|258540711|ref|YP_003175210.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus Lc 705] gi|229315026|gb|EEN80999.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus LMS2-1] gi|257152387|emb|CAR91359.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus Lc 705] Length = 435 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LL +A+ + + + DH LR ++ E +V+ +R Sbjct: 17 VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVAAAAARY 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV R Sbjct: 70 HVPVVTGTWQRSAATAVSEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127 Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +G SG + + W + RP L ++DIR++ + + +C+DPSN Sbjct: 128 -------LGRSGDPAALVGIRPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180 Query: 195 TDDRFERVRVRRFV 208 D R+ R ++R V Sbjct: 181 ADTRYARNQLRHQV 194 >gi|148264776|ref|YP_001231482.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4] gi|146398276|gb|ABQ26909.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4] Length = 459 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE--VRYVSDVC 77 ++VAVSGG+DS+ LL VL+ S +++ + ++HCLR E+ DE VR ++ Sbjct: 21 VVVAVSGGADSVALL----DVLAGFSSLRLRLIVVHLNHCLRGAESDADEAFVRELAGKY 76 Query: 78 SRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V V + + + L A R ARY SE A + A ++ AH DDQ ETV Sbjct: 77 GVTFVTQAVDVQDLSKREKLSLEEAGRAARYRFFSEIAASCKARAVVLAHHADDQAETVL 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G G SG+C +++ RP L R +I ++L +R + + D SN D Sbjct: 137 MRLLR-----GAGGSGLCAMAAKSAGMYV-RPLLSVTRFEIEAYLRERGLVFRTDSSNAD 190 Query: 197 DRFERVRVR 205 F R RVR Sbjct: 191 VNFLRNRVR 199 >gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62] Length = 462 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 21 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 78 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 192 YLRNRLRNQV 201 >gi|319943422|ref|ZP_08017704.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599] gi|319743237|gb|EFV95642.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599] Length = 476 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 28/219 (12%) Query: 4 SPIESVR-FFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +P++++R R+ + P +L+A SGG DS + +H+V + R ++ + V H Sbjct: 5 TPVDALRQCLQRAGLGPDDTLLLACSGGRDSQ---VLMHAVAALRPV--VRAAVAHVHHG 59 Query: 62 LRETAKDEVRYVSDVCS---------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 L+ A D + + + S RLR++ + GL A AR RY +++ Sbjct: 60 LQSRADDWLVFCAAEASSLGLPFLSRRLRVSAGFGA-------LGLEAWARAGRYRALAD 112 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPF 169 A I A +++TAH +DQLETV +R +R +GL+GM ++ + + RPF Sbjct: 113 MAAEIGARVVLTAHHANDQLETVELRRRRGSGL--LGLAGMRESSPMPHAPAGMRVLRPF 170 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L R+ + + I W EDPSN D R R RVRRF+ Sbjct: 171 LGLSRQQLAEWAQAHGIQWVEDPSNQDTRLARNRVRRFL 209 >gi|291561227|emb|CBL40026.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 541 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +L AVSGG+DS+ LL+ LH + ++ IK A ++H +R E +DE R+V ++C R Sbjct: 36 VLAAVSGGADSVCLLLLLHEMAAELG---IKVFAFHMNHGIRGAEADRDE-RFVMELCER 91 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I AH V ++ A R RY + E A+ I AH DD ETV Sbjct: 92 LNIPLTVAHEKVEEYAAERGLSGEEAGRILRYHHLGETAEKYQCAKIAVAHHEDDDAETV 151 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL+G+ N I RP L R++I +L ++ +SWCED +N Sbjct: 152 LLNLFR-----GSGLAGLSGIRPVREN--IIRPLLCVSRKEIEEYLNEQELSWCEDSTNK 204 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 205 ENDYTRNKIR 214 >gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21] gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21] Length = 325 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 17/194 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS+ LL+ L G ++ A +VDH LR + +E R + +C L + Sbjct: 29 IAFSGGPDSLALLLLAVEALP----GSVE--AATVDHGLRAESAEEARNAARICEALGMP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +S + P + A AR ARY ++E A+ + I TAH DDQ ET MR+ R Sbjct: 83 HETLS--VTIPHGNVQAEARHARYEALAEWAERRSLDYIATAHHADDQAETFLMRANRSS 140 Query: 144 AEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 GLSG+ T L + +L + RP L RR + DPSN D+ F Sbjct: 141 -----GLSGLAAVRAATSLGEGDLIVLRPLLPWRRSALEDIARDSGFPVAADPSNLDESF 195 Query: 200 ERVRVRRFVRDIDL 213 +RVR+R+ + ++D Sbjct: 196 DRVRMRKGLAEVDF 209 >gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] Length = 528 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 20/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +L AVSGG DS+ LL L + D + DH LR + + +V + RL Sbjct: 26 LLAAVSGGGDSVALLYLLKAAGRDTIVAHL-------DHALRPDSAADAAFVEKLAQRLG 78 Query: 81 ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 H V + + L AAARE RYA ++ A+ A I+TAHT DD ETV + Sbjct: 79 FPLETEHVDVRALAHRKRINLEAAAREVRYAFLARVARRWKARCILTAHTLDDNAETVLL 138 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A +G+G+ L ++RP L R ++R++L R W EDP+N Sbjct: 139 QILRG-AGRGLGIR--------PLQRRVARPLLEFSRAELRAYLEARGARWLEDPTNRSL 189 Query: 198 RFERVRVRRFV 208 +R +R V Sbjct: 190 ELDRNYLRHAV 200 >gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 484 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 17/331 (5%) Query: 22 ILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++AVSGG DSM L L + L+ R I + +VDH LR + +E +V Sbjct: 56 LVLAVSGGPDSMALMHLARRWATLASRQAATITVA--TVDHGLRPESAEEATFVKAHARA 113 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H + W KP GL AAAR ARYAL++ A+ +N ++TAHT DDQ ET+ MR Sbjct: 114 LGFEHVTLVWSGEKPSAGLQAAARRARYALLTAQAR-VNGASLLTAHTRDDQAETLIMRL 172 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GLS + D + + RP L + + ++L R++ + DPSN + F Sbjct: 173 SRGSGVD--GLSAIAPVSGRD-GVRLVRPLLGFSKTRLTAYLRARHVPFVRDPSNENTAF 229 Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ERVR+R ++ + AL L + R ++ A + + V + I + Sbjct: 230 ERVRLRLAMKALANAGVSKAALALSAARLGRSRAALDEAAERFLDGFFRVSPLAHGEIDR 289 Query: 255 DILNI--DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + + D L L RV + GG+ P +ER++ L+S G ++I Sbjct: 290 EAFDALPDEIALRVLARV-LPLVGGRAEPPRMMRLERLLENLRSRNSEATLGGSLMIAAA 348 Query: 313 ANFLWITRAVRNLPT-LILYPEETTVWDGRY 342 + R P L L P +WD R+ Sbjct: 349 GRLSFYREPGRMKPEPLFLEPRVAVLWDRRF 379 >gi|293390367|ref|ZP_06634701.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950901|gb|EFE01020.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 448 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 8/188 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+ SGG DS LL +R +++ AI + H L A + +C +L Sbjct: 23 QFLIGFSGGLDSTALLTLFAKHRENRPHFQLR--AIHIHHGLSPNADAWTAHCQQICRQL 80 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + K + Q G+ A AREARY I++H + + TAH DQ ET ++ + Sbjct: 81 NIPLLIQPVK-VRLQNGIEAGAREARYEAIAQH--ILPEEWLATAHHQQDQTETFFLALK 137 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++I+Y + I RP L R+ + +F+ Q+ ++W ED SN D++++ Sbjct: 138 RGSGLQGLG-AMQANSIVYGVP--IFRPLLNFSRQQLMAFVQQQQLTWVEDESNEDNQYD 194 Query: 201 RVRVRRFV 208 R +R V Sbjct: 195 RNFLRNVV 202 >gi|322831607|ref|YP_004211634.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602] gi|321166808|gb|ADW72507.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602] Length = 447 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 149/334 (44%), Gaps = 28/334 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS LL L + L D++ I+ A+ + H L + A D V + C + Sbjct: 24 LCVAFSGGLDSSVLLAGL-AELRDKALPDIELRALHIHHGLSQFADDWVAHCQTFCQQRD 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I SV + + G+ AAAR ARY +E +++TA +DQ ET + +R Sbjct: 83 IPFSVAKVQVDAQEGGIEAAARTARYQAFAE--SLTAGEVLLTAQHLNDQCETFMLALKR 140 Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ +SG T Y L RPFL RE + + Q + W ED SN D RF+ Sbjct: 141 GSGPAGLSAMSGDSSTHGYRL----LRPFLELSREQLEEYAKQLKLCWIEDDSNRDARFD 196 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILN 258 R F+R ALY + F + + A + S+ +++ Q L+ Sbjct: 197 ----RNFLRLDIFPALYQRWPHFAQATARSASLCAEQETLLDELLSESLTSLTDEQGSLS 252 Query: 259 IDSTLLFYLLRVSA------AICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309 ++ F +R SA A+ G + +P ++R+ + + + + +G++V+ Sbjct: 253 VERLKAFSAVRRSALLRRWLALRGAR--MPSREQLQRIWDEVALSREDAQAQLVLGKMVV 310 Query: 310 DRRANFLWITRAVRNLPTLILY---PEETTVWDG 340 R L++ R+L IL E+ T+ DG Sbjct: 311 RRFRGRLYVLPERRSLKDQILCWDPAEKLTLPDG 344 >gi|83859796|ref|ZP_00953316.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii HTCC2633] gi|83852155|gb|EAP90009.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii HTCC2633] Length = 427 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 104/188 (55%), Gaps = 11/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS LL AL + D + A+ VDH LR + +E +D L Sbjct: 5 LALGYSGGGDSTALLHALKACFPD-----VALHALIVDHSLRPESAEEAADNADYARDLG 59 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ W + + AAAR+AR+AL++ + + +L+ HT DD++ET+ MR+ R Sbjct: 60 AEPHILRWSSPRKNQ---AAARQARHALLAGACEGLGVSLLCLGHTLDDRIETLRMRANR 116 Query: 142 DYAEKGM-GLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + G++ + + ++ NL ++RP L RR+++R++L + W +DPSN D + Sbjct: 117 KGGWRTLTGMTALDASPIWPEGRNLTVARPLLEMRRDELRTYLRRIKARWVDDPSNDDAQ 176 Query: 199 FERVRVRR 206 FER+R+R+ Sbjct: 177 FERIRLRQ 184 >gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102] gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102] gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031] Length = 497 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|315660323|ref|ZP_07913176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus lugdunensis M23590] gi|315494612|gb|EFU82954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus lugdunensis M23590] Length = 430 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 33/250 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI++AVS G DSM LL AL + D K + + V+H LRE + +E R+ C + Sbjct: 13 HIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++H V S K + +R+ RY +NA +++TAH DDQ Sbjct: 70 QLSYDIKHLDLSHLVASGK------SIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET++ R A + +G+S + Y I RP L+ ++DIR F ++ + E Sbjct: 124 LETIFYRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRV-KVNNAVAMLIPKYL 242 D SN +++ R +R R + +I D+ L LK+K + D ++ ++ N ++ I Y+ Sbjct: 180 DCSNHINKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKISRFIQDYV 238 Query: 243 TV-HMRSIIA 251 + H ++I Sbjct: 239 NMNHNHTMIT 248 >gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58] gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58] Length = 318 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 21/201 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+ SGGSDS+ L L S+ KI F+A+ VDH RE +++E + Sbjct: 16 FFSSLDRKKSYLLGFSGGSDSLFLFYVLKSL-------KINFTAVHVDHGWRECSREEAK 68 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTF 128 + + C R +I S + + S + G L AAR+ARYA + N + + AH Sbjct: 69 ALKEFCHREKI--SYIGHRLSPEEKGERDLENAARKARYAFFYQLCVQQNFSGVFLAHHA 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 +DQ ET+ R +G LS GM + Y + + RP L + + S L + Sbjct: 127 NDQAETLLKR-----VLEGAHLSNLKGMTVSSFYQ-GMQLLRPLLHIPKARLMSLLHREK 180 Query: 186 ISWCEDPSNTDDRFERVRVRR 206 IS+ D +N D+R+ R R+R+ Sbjct: 181 ISYISDETNEDERYLRARMRK 201 >gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301] gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301] Length = 456 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 10/201 (4%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F R L H+L+A+SGG DS + LH + + + + + A+ V H L A Sbjct: 28 HFLSRYLKPNQHVLLALSGGLDST---VLLHLLAAAKQTIRFELHAMHVHHGLSPNADAW 84 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHT 127 + C L + VV + + + G+ AAAR+ RY AL I ++TAH Sbjct: 85 ADFCMQQCQLLNVPIKVVRVQLDLNAKQGIEAAARQLRYEALFDFKVSGIAPDFVVTAHH 144 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ ++ R G G+ G+ D + + RP L R+ ++ + Q NI Sbjct: 145 QDDQAETLLLQLFR-----GAGVKGLASMGCIDESRRLMRPLLDISRQTLQEYAEQNNIQ 199 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 WC D SN + ++ER VR V Sbjct: 200 WCNDESNDNTQYERNFVRHDV 220 >gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2] gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2] gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 480 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++R+V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + N+ DPSN + + R R+R++V Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214 >gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134] gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134] Length = 476 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++R+V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + N+ DPSN + + R R+R++V Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 210 >gi|161506859|ref|YP_001576813.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571] gi|160347848|gb|ABX26522.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571] Length = 431 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ + F K A +H LR +++E + + CS Sbjct: 32 LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 88 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + ++ Sbjct: 89 VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 148 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M M + + + RP L + ++ + + I + D +N D Sbjct: 149 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 205 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 206 RNRLRHHV 213 >gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254764824|sp|B3CLY6|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine synthetase) (trna(ile)-2-lysyl-cytidine synthase) [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 430 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 12/202 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYV 73 S + I VAVSGG DS ++ LH + + K+ A++V+H LR ++ E ++ Sbjct: 13 SFAFHNQIAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPIALTVNHGLRSESQKEADFI 69 Query: 74 SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L S +++W+ + + AR+ARY L++E K N ++ AH DDQ Sbjct: 70 ISYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHKDDQA 129 Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET +R E+G G+ G+ D + ++I RP L R +I + + W E Sbjct: 130 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIERYAKLHQLRWIE 184 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 D SN D ++ R R ++ D Sbjct: 185 DRSNYDLKYRRTLYRNLLKASD 206 >gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58] gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58] Length = 314 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 14/182 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL S R +A++VDH LR + DE V+ C I Sbjct: 32 IAVSGGPDSMALLCLAASAFPGR------VAAVTVDHGLRRESADEAALVARWCVAHGIE 85 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H + ++ + A AR RY L+ + IMTAH DDQLET+ MR R Sbjct: 86 HVTLP-ADATVTGNVQAWARTTRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLNR-- 142 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G G+ G+ + ++ + RP L R+ +++F+ + + + +DPSN D RF+R Sbjct: 143 ---GSGIGGLAG--VRAVSGRVIRPLLGERKAMLQAFVDREGLPYVQDPSNRDRRFDRAT 197 Query: 204 VR 205 +R Sbjct: 198 LR 199 >gi|323465808|gb|ADX69495.1| tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus H10] Length = 418 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ + F K A +H LR +++E + + CS Sbjct: 19 LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + ++ Sbjct: 76 VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M M + + + RP L + ++ + + I + D +N D Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 193 RNRLRHHV 200 >gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18] gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18] Length = 480 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + V+ + Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + N+ DPSN + + R R+R++V Sbjct: 184 VNYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214 >gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633] gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633] Length = 450 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 6/185 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL + + + F ++FS + + H LR+ + +E V + C+ I Sbjct: 21 LLAVSGGVDSMVLLESFFKL--QKKFPTLQFSVVHIHHHLRKESDEEEEMVRNFCNERSI 78 Query: 83 AHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W+ Q G+ AR+ RY + E K A ++ AH DDQ ETV M+ R Sbjct: 79 SIEVYHWEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHADDQAETVLMKLTR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + G++GM + I RPFL +ED+ + I + ED SN + R Sbjct: 139 GSTIE--GIAGMKSIRPFSEGYLI-RPFLTVDKEDLYEYASIHQIPFKEDSSNQSLEYTR 195 Query: 202 VRVRR 206 R R+ Sbjct: 196 NRFRK 200 >gi|238796629|ref|ZP_04640136.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969] gi|238719607|gb|EEQ11416.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969] Length = 437 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 6/183 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LV SGG DS +L+ L + D+ ++K AI + H L A D V++ C R +I Sbjct: 12 LVGFSGGLDS-SVLLHLLVCIRDQLIPELKVRAIHIHHGLNPLADDWVKHCQQQCERWQI 70 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 VV G+ AAAR ARY S H +++TA DDQ ET + +R Sbjct: 71 PLEVVRVSIDPRHNGIEAAARTARYQAFSSHLAA--NEVLLTAQHLDDQCETFLLALKRG 128 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M + + + + RP L RE + S+ + + W ED SN DDRF+R Sbjct: 129 SGPA--GLSAMAARMPFAHSQ-LLRPLLTFSREMLESYARTQQLQWIEDDSNQDDRFDRN 185 Query: 203 RVR 205 +R Sbjct: 186 FLR 188 >gi|260102340|ref|ZP_05752577.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus DSM 20075] gi|260083849|gb|EEW67969.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus DSM 20075] Length = 418 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ + F K A +H LR +++E + + CS Sbjct: 19 LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + ++ Sbjct: 76 VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M M + + + RP L + ++ + + I + D +N D Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 193 RNRLRHHV 200 >gi|309750178|gb|ADO80162.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2866] Length = 430 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A+ V++ D+C +L Sbjct: 20 LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKT-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + I I N Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E++T+ Sbjct: 308 RYQDSLYLTKPFSDLTKYCLKLEKSTL 334 >gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222] gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200] gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto str. T04001] gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200] gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222] Length = 480 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 184 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407] gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407] gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 480 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 184 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|238763959|ref|ZP_04624915.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638] gi|238697776|gb|EEP90537.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638] Length = 461 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L D+ + AI + H L A VR+ C + Sbjct: 24 HVLVGFSGGLDS-SVLLHLLVCLRDKLIPDLMIRAIHIHHGLNPLADTWVRHCQQQCEQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I VV TG+ AAAR RY + H N L+ TA DDQ ET + + Sbjct: 83 NIPLEVVRVNIDARHTGIEAAARTVRYQAFASHLAA-NEVLV-TAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GLS M + + LW RP L RE + ++ + + W ED SN DDRF Sbjct: 141 RGSGPA--GLSAMAAKMPFAHSQLW--RPLLAFSRETLENYAQVQRLQWIEDDSNQDDRF 196 Query: 200 ERVRVR 205 +R +R Sbjct: 197 DRNFLR 202 >gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis CT-43] Length = 430 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 180 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470] gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470] Length = 497 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM L + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALFTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ M+ R Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172 Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G S G+ + + I RP L +E++ F ++ + ED +N + Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 227 YLRNRLRNQV 236 >gi|301155698|emb|CBW15166.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae T3T1] Length = 430 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 9/196 (4%) Query: 11 FFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F + PA+ +L+A SGG DS LL + + R + AI + H L A Sbjct: 6 LFQAQIPTPANKLLIAFSGGLDSTALLSLVKKLSKKRP--HLSLRAIHIHHGLSPNADTW 63 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +C + I +V + G+ A AREARY IS H + ++TAH + Sbjct: 64 TAHCQQLCKQFAIP-LIVEKVKVEMHDGIEAGAREARYQAISTHIQP--DEYLVTAHHLN 120 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET ++ +R +G+G + ++ L+ + I RP L R ++ ++ Q N+SW Sbjct: 121 DQTETFFLALKRGAGLQGLG-AMQKESQLFGMP--ILRPLLSFSRNELEDYVQQENLSWV 177 Query: 190 EDPSNTDDRFERVRVR 205 ED SN D+ +ER +R Sbjct: 178 EDESNQDNHYERNFLR 193 >gi|145640364|ref|ZP_01795948.1| DNA mismatch repair protein [Haemophilus influenzae R3021] gi|145274950|gb|EDK14812.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21] Length = 430 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 86/341 (25%), Positives = 152/341 (44%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C +L Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + I I N Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D L Sbjct: 308 RYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDL 340 >gi|303256929|ref|ZP_07342943.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47] gi|302860420|gb|EFL83497.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47] Length = 478 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 6/190 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++VA SGG DS LL A+ S L +S+G+I +A+ V H L + A + + + Sbjct: 47 PINVIVAFSGGLDSSVLLYAV-SQLKGKSYGEI--TAVHVHHGLSKHANEWAEFCEERAK 103 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + G A AR+ RY ++ E A+ A I+TAH DDQLET ++ Sbjct: 104 KCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKSAADAILTAHHLDDQLETFLIQ 163 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL+ M + D I RP L +R ++ F R I W ED SN D + Sbjct: 164 WMRGSGP--AGLAAMPPLLRKD-GCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDMK 220 Query: 199 FERVRVRRFV 208 + R +R + Sbjct: 221 YLRNAIRHNI 230 >gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842] gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842] Length = 476 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 180 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001] gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001] Length = 435 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 10/199 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DS+ L SF + A+ VDH LR + E + Sbjct: 47 VAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGLEAHQTLARLQAMN 99 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ + K + + AREARYA + + T ++ H DD ETV+MR Sbjct: 100 IPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADDLAETVWMRQNS 159 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ G T+ D+ L RP L R+ +R+ L Q ++ W +DPSN D R ER Sbjct: 160 SSGPEGLAGMGWI-TVRPDIRL--IRPMLGFSRQALRNTLRQAHVEWVDDPSNQDQRAER 216 Query: 202 VRVRRFVRDIDLHALYLKM 220 VR+R ++ D A + ++ Sbjct: 217 VRLRYLLQKNDQRAHFWQL 235 >gi|238754787|ref|ZP_04616138.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473] gi|238706947|gb|EEP99313.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473] Length = 447 Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 6/201 (2%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M P ++ L H+LV SGG DS LL AL +L DR + AI V H Sbjct: 1 MNHDPHPIIKHIASQLQGARHLLVGFSGGVDSSVLLHAL-MMLRDRLLPDLVIRAIYVHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + C R IA +V + TG+ AAAR ARY + + Sbjct: 60 GLNPLADSWGEHCQHQCQRWNIALEMVRVQIDPSDTGIEAAARTARYQAFK--TRLASDE 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET + +R G LS M + + + +I RP L R+++ + Sbjct: 118 VLLTAQHLDDQCETFLLALKRGSGPAG--LSAMAALMPF-AHSYIIRPLLALSRQELERY 174 Query: 181 LLQRNISWCEDPSNTDDRFER 201 ++W ED SN DDRF+R Sbjct: 175 ADDYQLTWIEDDSNQDDRFDR 195 >gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46] gi|226695542|sp|B0UGN1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46] Length = 344 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 5/115 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DS L+ + L R + +VDH LR + +E V+ + RL + Sbjct: 32 LAVSGGPDSTALM-GCAAALPPR----VPVLVATVDHGLRPESGEEAAGVAALAGRLGLP 86 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 H +++W+ KP+T L AAR ARY L+ A+ A I+TAHT DDQ ETV MR Sbjct: 87 HRILTWRGEKPRTRLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAETVLMR 141 >gi|289551692|ref|YP_003472596.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01] gi|289181223|gb|ADC88468.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01] Length = 430 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 33/250 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI++AVS G DSM LL AL + D K + + V+H LRE + +E R+ C + Sbjct: 13 HIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++H V S K + +R+ RY +NA +++TAH DDQ Sbjct: 70 QLSYDIKHLDLSHLVASGK------SIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET++ R A + +G+S + Y I RP L+ ++DIR F ++ + E Sbjct: 124 LETIFYRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRV-KVNNAVAMLIPKYL 242 D SN +++ R +R R + +I D+ L LK+K + D ++ ++ N + I Y+ Sbjct: 180 DCSNHINKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKTSRFIQDYV 238 Query: 243 TV-HMRSIIA 251 + H ++I Sbjct: 239 NMNHNHTMIT 248 >gi|227878371|ref|ZP_03996326.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus JV-V01] gi|256844414|ref|ZP_05549900.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849198|ref|ZP_05554631.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-1A-US] gi|262047214|ref|ZP_06020172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-3A-US] gi|227862050|gb|EEJ69614.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus JV-V01] gi|256613492|gb|EEU18695.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713974|gb|EEU28962.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-1A-US] gi|260572459|gb|EEX29021.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-3A-US] Length = 417 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ SF A DH LR + EV + + C++ + Sbjct: 19 LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + ++ Sbjct: 76 ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + M + M +L RP L ++++ + +R I + D +NT+ Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 189 DETVRNRLRHHV 200 >gi|194467678|ref|ZP_03073665.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23] gi|194454714|gb|EDX43611.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23] Length = 464 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 17/211 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 8 FERHLERSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---NRPQIIVAHMNHQ 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C R + +V W ++ PQTG+ AAR+ARY E K A Sbjct: 61 LRKQSQLEERFIRQYCKRNDLKLAVAHWPQDLHPQTGVENAARQARYHFFREVMKDNQAR 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDI 177 +++TAH +D ET+ M+ R G LS G+ D + I RP L ++ + Sbjct: 121 ILITAHHQNDLAETMLMKMTR-----GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQL 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + LQ ++ W ED +N D +R R R + Sbjct: 175 KKYALQHHLKWYEDKTNKDLNIQRNRFRHAI 205 >gi|153815236|ref|ZP_01967904.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756] gi|317502308|ref|ZP_07960477.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium 8_1_57FAA] gi|145847495|gb|EDK24413.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756] gi|316896264|gb|EFV18366.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium 8_1_57FAA] Length = 488 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 88/192 (45%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++ VSGG+DS+ LL+ L S+ FG + V+HCLR A D + YV +C L Sbjct: 29 VIAGVSGGADSVCLLLTLCSLRE--KFG-FEVKVCHVNHCLRGAAADADEEYVKKLCGEL 85 Query: 81 ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R+ V K + A RE R + T I TAH DDQ ETV Sbjct: 86 GVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHRDDQAETVL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+C + N RP L R+ I S+L +R I W D +N + Sbjct: 146 LNIAR-----GTGIRGLCGIVPVRDNRI--RPLLSLTRDRIESYLRERGIVWRVDATNEE 198 Query: 197 DRFERVRVRRFV 208 D + R R+R V Sbjct: 199 DDYTRNRIRHKV 210 >gi|331089912|ref|ZP_08338804.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium 3_1_46FAA] gi|330403144|gb|EGG82705.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium 3_1_46FAA] Length = 512 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 88/192 (45%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++ VSGG+DS+ LL+ L S+ FG + V+HCLR A D + YV +C L Sbjct: 53 VIAGVSGGADSVCLLLTLCSLRE--KFG-FEVKVCHVNHCLRGAAADADEEYVKKLCGEL 109 Query: 81 ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R+ V K + A RE R + T I TAH DDQ ETV Sbjct: 110 GVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHRDDQAETVL 169 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+C + N RP L R+ I S+L +R I W D +N + Sbjct: 170 LNIAR-----GTGIRGLCGIVPVRDNRI--RPLLSLTRDRIESYLRERGIVWRVDATNEE 222 Query: 197 DRFERVRVRRFV 208 D + R R+R V Sbjct: 223 DDYTRNRIRHKV 234 >gi|229846491|ref|ZP_04466599.1| cell cycle protein [Haemophilus influenzae 7P49H1] gi|229810584|gb|EEP46302.1| cell cycle protein [Haemophilus influenzae 7P49H1] Length = 430 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A V++ ++C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHALSPNADCWVQHCQNLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKA-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + + Q ++W D SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLYQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 308 RYQDCLYLTKRFSDLTKCTLKLEQNTL 334 >gi|295692143|ref|YP_003600753.1| cell cycle protein [Lactobacillus crispatus ST1] gi|295030249|emb|CBL49728.1| Cell cycle protein [Lactobacillus crispatus ST1] Length = 417 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ SF A DH LR + EV + + C++ + Sbjct: 19 LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + ++ Sbjct: 76 ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + M + M +L RP L ++++ + +R I + D +NT+ Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 189 DETVRNRLRHHV 200 >gi|312978414|ref|ZP_07790156.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05] gi|310894757|gb|EFQ43829.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05] Length = 417 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ SF A DH LR + EV + + C++ + Sbjct: 19 LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + ++ Sbjct: 76 ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + M + M +L RP L ++++ + +R I + D +NT+ Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 189 DETVRNRLRHHV 200 >gi|293380361|ref|ZP_06626432.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1] gi|290923044|gb|EFD99975.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1] Length = 417 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L ++ SF A DH LR + EV + + C++ + Sbjct: 19 LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + ++ Sbjct: 76 ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + M + M +L RP L ++++ + +R I + D +NT+ Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 189 DETVRNRLRHHV 200 >gi|229824541|ref|ZP_04450610.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271] gi|229785912|gb|EEP22026.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271] Length = 487 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 7/190 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGG DSM +L ++ + R + ++ +H LR + +E + ++ + Sbjct: 24 VVLAVSGGVDSMVMLRLMNELNQLRQYNHLQLVVAHFNHKLRPESDNEAVAIKEIVAEYG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W T + A AR+ARY +E +T A ++MTAH +D ET MR R Sbjct: 84 CIYFATEW-GEPAATNVEAQARDARYQFFAEVIRTTEADVLMTAHHLNDVAETFLMRMTR 142 Query: 142 DYAEKGM-GLSG-----MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G+ G+ G M D + + I RPF+ + ++ ++ + N+++ ED SN Sbjct: 143 GTSIRGLQGIRGCYQRLMSDPSGHTVMPTIIRPFIGVTKAELEAYAEKFNVTYFEDASNY 202 Query: 196 DDRFERVRVR 205 D F R R R Sbjct: 203 MDHFVRNRFR 212 >gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594] gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 319 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/196 (35%), Positives = 94/196 (47%), Gaps = 21/196 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGG DS+ LL+ ++ L R A ++DH LR A DE V +C RL + Sbjct: 18 VAVSGGPDSLALLLLANTALPGRVV------AATIDHGLRPEAADEAAMVGGLCERLGVL 71 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H V T AR+ARY + A TAH DDQ ET+ MR R Sbjct: 72 HHTVEVALEPGNT--QDRARKARYEALCRCFGEQGADTFATAHHADDQAETLLMRFNR-- 127 Query: 144 AEKGMGLSGMCD----TILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G GLSG+ T+L + RP L RRE++ + ++ +DPSN Sbjct: 128 ---GSGLSGLAGIRARTVLLSPEPLGEYLVVRPLLEWRREELAGIVADAGLAPVQDPSNV 184 Query: 196 DDRFERVRVRRFVRDI 211 D R++RV+VRR + D+ Sbjct: 185 DTRYDRVQVRRALADL 200 >gi|205371981|ref|ZP_03224799.1| cell cycle protein MesJ [Bacillus coahuilensis m4-4] Length = 456 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 25/210 (11%) Query: 9 VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 VR F+ R L+ H+LV VSGG+DSM LL L ++ ++ ++K + ++VDH LR E Sbjct: 7 VRQFIDKERLLMGEEHVLVGVSGGADSMMLLSMLMALQKEK---ELKITVVTVDHMLRGE 63 Query: 65 TAKDEVRYVSDVCSR---------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + ++ +V C + + + H++ + K S L AR+ RY E K Sbjct: 64 ESYQDLEFVRAYCEQHGISFVGKQVNVKHALTAQKGS-----LQQVARDMRYGAFLETLK 118 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AT++ DDQ+ETV M R KG G+ D Y L RP L ++ Sbjct: 119 AVKATVLALGQHGDDQVETVLMGLTRGGTSKGYGIPITRDFHGYPL----IRPLLPLTKD 174 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 DI SF+ I + EDPSN + + R R R Sbjct: 175 DIYSFVQHHRIPYREDPSNQKEDYTRNRFR 204 >gi|119471144|ref|ZP_01613676.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Alteromonadales bacterium TW-7] gi|119445800|gb|EAW27082.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Alteromonadales bacterium TW-7] Length = 434 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 17/188 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL +H + + K+K SAI V+H L E A D + ++C L I Sbjct: 27 VALSGGVDSVVLLHVMHVL--KQEMPKLKVSAIYVNHGLSEYANDWQAFCQNLCVELDIP 84 Query: 84 HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + S + +T L A AREARY + E + ++I+ +DQ+ET +R +R Sbjct: 85 FNTAQVTISPQTRTSLEAQAREARYKALDELSAP--QSVILLGQHLNDQIETFLLRLKRG 142 Query: 143 YAEKGMG-LSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 KG+G + M + I Y RP L R DI F NI+ D SNTD+ Sbjct: 143 SGLKGLGAMQAMRELQSGRICY-------RPLLSITRSDIEHFATAFNIAHITDDSNTDE 195 Query: 198 RFERVRVR 205 RF+R +R Sbjct: 196 RFDRNFLR 203 >gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201] gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201] Length = 480 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L ++E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVKKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3] gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3] Length = 283 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + V+ + Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + N+ DPSN + + R R+R++V Sbjct: 184 VNYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214 >gi|299536712|ref|ZP_07050022.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1] gi|298727826|gb|EFI68391.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1] Length = 468 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 19/197 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79 H+L+AVSGG DSM LL H + + I+ A+ VDH LR A E R +V C Sbjct: 22 HLLIAVSGGVDSMALL---HYFIQTQEQWNIQVEAVHVDHMLRGEASSEDRAFVQKYCD- 77 Query: 80 LRIAHSVVSWKNSKPQTGLMAAA--------REARYALISEHAKTINATLIMTAHTFDDQ 131 A+SV P ++A R RY E + NA ++TAH DDQ Sbjct: 78 ---ANSVYLHAKEIPIPTILAQENGNTQLICRRERYQFFKEVLQKTNANKLVTAHHADDQ 134 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LE+V M ++ M G+ ++ I RPFL + +I +LL++ + + ED Sbjct: 135 LESVLMALTKNATMNSM--QGIRPQRIFGGKSLI-RPFLTVTKSEIGEYLLRKGLDYRED 191 Query: 192 PSNTDDRFERVRVRRFV 208 SN+ D + R R R V Sbjct: 192 ASNSKDTYVRNRFRHHV 208 >gi|229844434|ref|ZP_04464574.1| pyridoxine kinase [Haemophilus influenzae 6P18H1] gi|229812683|gb|EEP48372.1| pyridoxine kinase [Haemophilus influenzae 6P18H1] Length = 430 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 30/340 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + R + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IP-LIIERVQVDKTNGIEAVAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G + ++L+ + I RP L R + + + ++W D SN D+R++ Sbjct: 137 GSGLKGLG-AMQQQSVLFGMP--ILRPLLGFTRPQLEDYAQKEKLNWITDESNGDNRYD- 192 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ---RNFLRNKILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311 F Y L A + Q+ +P R + +++ +F K + VI R Sbjct: 249 LCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIRR 308 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + L++T+ +L L E+ T+ NL D L Sbjct: 309 YQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDDL 340 >gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter sp. ELB17] gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter sp. ELB17] Length = 212 Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 12/203 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R R L + +A SGG DS LL+ L + ++ S I SA+ ++H L+ A + Sbjct: 16 LRDLARQLPQHDRLCIAFSGGLDS-SLLLHLFAAITPAS---IALSALHINHQLQPNAAE 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + DVC+RL + VVS ++ GL AAR ARY + ++ + L++ A Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADE--LLLLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLETV R R G L+GM T ++RP L R + ++ Sbjct: 130 HHGDDQLETVLFRLFRGSGVAG--LAGMPFTRALCARA-LARPLLEFSRAQLEAWAEGAG 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + W EDPSN+D RF+R +R V Sbjct: 187 LPWMEDPSNSDQRFDRNYLRNSV 209 >gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] Length = 427 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG DS LL L V + + K +VDH +R+ +K+EV++V ++ L Sbjct: 24 ILVAVSGGVDSSVLLNLLARV---QEYFKFSIFCATVDHGIRKESKEEVKFVYNMAQSLN 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V + + + AAR+ RY ++E AK INA + TAH +D ETV Sbjct: 81 VECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVATAHNLNDLAETVLF 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ GM N I RP L R++I F + I + D +N D Sbjct: 141 RLARGTGP--FGIYGMKPR-----NGNIIRPLLFFERKEIEQFATENKIPFVVDKTNFDT 193 Query: 198 RFERVRVR 205 ++ R +R Sbjct: 194 KYTRNFIR 201 >gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29] gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29] Length = 480 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + V+ + Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + N+ DPSN + + R R+R++V Sbjct: 184 VNYCNEINLIPRIDPSNKKEVYTRNRLRKYV 214 >gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185] gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W] gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876] gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876] gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W] gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185] Length = 480 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++R+V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + N+ DPSN + + R R+R++V Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214 >gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4] gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4] Length = 467 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+AVSGG DSM L+ L R I+ F + V+H LR+ + +E +++S C+ Sbjct: 23 LLLAVSGGVDSMVLV-----DLIQRLPNAIRPWFGVVHVNHQLRQASMEEEKFLSQYCAS 77 Query: 80 LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RI W + Q G+ AAARE RYA E K AT ++T H DDQ+ET+ MR Sbjct: 78 NRIPFFFKRWPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDDQMETILMR 137 Query: 139 SQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G L + Y L +RP L +E + + +R++S+ ED SN Sbjct: 138 LVR-----GGQLESIAGIKKHRTFYGKQL--TRPLLDYSKETLYQYSQERSLSFYEDESN 190 Query: 195 TDDRFERVRVR 205 + R R R Sbjct: 191 NSLEYTRNRYR 201 >gi|291551165|emb|CBL27427.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus torques L2-14] Length = 482 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M +E + ++R + I++ VSGG+DS+ LL+AL S+ F + Sbjct: 1 MMDKRLEKIENYIRQYHMIEKGDRIVIGVSGGADSVCLLMALCSLQEKLGF---QVLVCH 57 Query: 58 VDHCLR--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALIS 111 V+H LR E A+DE YV +C ++++ H V K + L A R R Sbjct: 58 VNHELRGEEAAQDEA-YVEMLCHKMQVPFFAFHENVELIAKKRKESLEEAGRYVRRQAFE 116 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + + T I TAH +D ET+ + R G GL G+C I WI RP L Sbjct: 117 QLCREQGGTKIATAHHSNDNAETMLLNMAR-----GTGLRGLC-GIRPVYGKWI-RPLLE 169 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 RE+I +L IS+C D +N +D + R R+R + Sbjct: 170 LSREEIEQWLKDCEISYCIDETNQEDEYTRNRIRHHI 206 >gi|148827606|ref|YP_001292359.1| cell cycle protein [Haemophilus influenzae PittGG] gi|226695540|sp|A5UGS0|TILS_HAEIG RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148718848|gb|ABQ99975.1| cell cycle protein [Haemophilus influenzae PittGG] Length = 430 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 143/326 (43%), Gaps = 22/326 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + +I AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLCQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + ++L+ + I RP L R + + + ++W D SN D+RF+ Sbjct: 137 GSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFD- 192 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ---RNFLRNEILPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311 F Y L A + Q+ +P R + +++ +F K + +I R Sbjct: 249 LCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKIIRR 308 Query: 312 RANFLWITRAVRNLPTLILYPEETTV 337 + L++T+ +L L E+ T+ Sbjct: 309 YQDRLYLTKPFSDLTKYCLKLEQNTL 334 >gi|261867859|ref|YP_003255781.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413191|gb|ACX82562.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 448 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 8/188 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+ SGG DS LL +R + + AI + H L A + +C L Sbjct: 23 QFLIGFSGGLDSTALLALFAKHRENRP--RFQLRAIHIHHGLSPNADAWAAHCQKICRHL 80 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + K + Q G+ A ARE RY I++H + + TAH DQ ET ++ + Sbjct: 81 NIPLLIQPVK-VRLQNGIEAGARETRYEAIAQH--ILPEEWLATAHHQQDQTETFFLALK 137 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++I+Y + I RP L R+ + +F+ Q+ ++W ED SN D++++ Sbjct: 138 RGSGLQGLG-AMQANSIVYGVP--IFRPLLNFSRQQLMAFVQQQQLTWVEDESNEDNQYD 194 Query: 201 RVRVRRFV 208 R +R V Sbjct: 195 RNFLRNVV 202 >gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 347 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 98/189 (51%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V SGG DSM LL AL ++ + F + A+ VDH LR E +++E + ++ V + L Sbjct: 24 VVVGTSGGPDSMALLYALKTLSAAMHFNLL---AVYVDHGLRPEESREEEQLMAAVAAAL 80 Query: 81 RIA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ ++ Q GL AARE RY ++ A A I AHT DDQ E + Sbjct: 81 EIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVAHTADDQAEELL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R R A G LSGM I RP L + ++ ++L QRNI++ D SN D Sbjct: 141 LRLLRGTARGG--LSGMAPLA----RGRIIRPLLAVSKAEVLAYLAQRNIAFARDSSNQD 194 Query: 197 DRFERVRVR 205 RF R RVR Sbjct: 195 LRFVRNRVR 203 >gi|269958448|ref|YP_003328235.1| putative ATPase [Anaplasma centrale str. Israel] gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel] Length = 447 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 6/187 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGG DSM LL + + ++ + ++V+H R A E R V L + Sbjct: 27 VAVSGGVDSMTLLNLVG--MFHKTQATSRPIVLTVNHGFRAEADYETRCVQKRALELGLE 84 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 ++ W P ARE RY L+ + + ++TAH DQ ETV M +R Sbjct: 85 CRILRWGGYIPSKS-QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQAETVLMHLERGS 143 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G LSGM + ++ N+ I RP L R++I + Q + W EDPSN D ++ R Sbjct: 144 GVDG--LSGMHERSVFG-NITICRPLLNFTRQEILQYATQERLFWVEDPSNQDSKYRRTF 200 Query: 204 VRRFVRD 210 R + + Sbjct: 201 FRNLIAE 207 >gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537] Length = 442 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 8/187 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V++L P ++VAVSGG DS+ LL AL ++ +++F V++ LR + ++ + Sbjct: 9 VQALQLPDKVIVAVSGGVDSVVLLDAL-----IKTQPQVEFIVAHVNYHLRPQSDNDAHF 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+++ + + V W+ Q + AAR+ RY E A I+ AH +DQ Sbjct: 64 VAEIAKKYHVVLRKVDWQGI-DQGSVEEAARDFRYCFFEELANEYATNTILVAHHANDQA 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ ++ R K LSGM T + I RP L ++ I+ + Q + WCED Sbjct: 123 ETILLKLVR--GGKLSQLSGMQPTRQVSKTVQIVRPLLPFSKQRIKLYAQQHRLEWCEDS 180 Query: 193 SNTDDRF 199 +N D + Sbjct: 181 TNADSAY 187 >gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9] gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9] Length = 351 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 10/193 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 + AVSGG+DS+ +L+ + + + SA+ V+H LR E+ DE +V+ +C Sbjct: 15 VCCAVSGGADSVAMLLLVCAANGGSKGLGLGVSAVHVNHGLRGAESDGDE-GFVAALCEG 73 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + ++ V+ + + + AARE RY A +++TAHT DDQ ETV Sbjct: 74 LGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVVLTAHTLDDQAETV 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M+ R +G+ G ++ + RP L RR ++ FL + W ED SN Sbjct: 134 LMKLLRGAWTEGL---GGISPVVEVPGGRVVRPVLGVRRGELVEFLKAKGQGWREDSSNA 190 Query: 196 DDRFERVRVRRFV 208 D+ F R R+R V Sbjct: 191 DEAFTRNRLRHTV 203 >gi|330860915|emb|CBX71195.1| tRNA(Ile)-lysidine synthase [Yersinia enterocolitica W22703] Length = 461 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 87/186 (46%), Gaps = 8/186 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L D+ + AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV G+ AAAR RY + H T N L+ TA DDQ ET + + Sbjct: 83 KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G LS M + + LW RP L RE + ++ + + W ED SN DDRF Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLVFSRETLENYAQVQRLQWIEDDSNQDDRF 196 Query: 200 ERVRVR 205 +R +R Sbjct: 197 DRNFLR 202 >gi|332160611|ref|YP_004297188.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606911|emb|CBY28409.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664841|gb|ADZ41485.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 461 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 87/186 (46%), Gaps = 8/186 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L D+ + AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV G+ AAAR RY + H T N L+ TA DDQ ET + + Sbjct: 83 KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G LS M + + LW RP L RE + ++ + + W ED SN DDRF Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLVFSRETLENYAQVQRLQWIEDDSNQDDRF 196 Query: 200 ERVRVR 205 +R +R Sbjct: 197 DRNFLR 202 >gi|160933737|ref|ZP_02081125.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753] gi|156867614|gb|EDO60986.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753] Length = 320 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 91/190 (47%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++ VSGG+DSM LL L S D + ++K +A V+HCLR E +DE +V C R Sbjct: 21 VVAGVSGGADSMALLHVLQSRRKD--WPELKVTAAHVNHCLRGAEADRDE-EHVRRYCQR 77 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V V + +K + GL A R RY A +I TAHT D ETV Sbjct: 78 EGIPLEVLKIDVREEAAKRKLGLEACGRAVRYEFFRRLAG--ENGVIATAHTLSDLAETV 135 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + +G GL G+C N I RP + C R +I + + I + D +N Sbjct: 136 LL-----HLTRGTGLKGLCGIPPVREN--IVRPLIDCSRREIEDYCREHKIPYVTDSTNL 188 Query: 196 DDRFERVRVR 205 + R+ R +VR Sbjct: 189 EARYSRNKVR 198 >gi|123443466|ref|YP_001007439.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090427|emb|CAL13295.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 461 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L D+ + AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV G+ AAAR RY + H T N L+ TA DDQ ET + + Sbjct: 83 KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G LS M + + LW RP L RE + + + + W ED SN DDRF Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLTFSRETLEHYAQVQRLQWIEDDSNQDDRF 196 Query: 200 ERVRVR 205 +R +R Sbjct: 197 DRNFLR 202 >gi|145628768|ref|ZP_01784568.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] gi|144979238|gb|EDJ88924.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] Length = 397 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 152/333 (45%), Gaps = 36/333 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LVA+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LVALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + ++ RP L R + + + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMPIF--RPLLGFTRPQLEDYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMR- 247 R F+R+ L L + F DL V+ +N+ ++ ++ + + Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304 + Q L +TLL L Q+ +P R + +++ +F K + Sbjct: 248 KLCQFRQYSLAKQTTLLRMWL------AENQLEMPSKRQLTQLINDVVFAKEEANPQFQL 301 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 VI R + L++T+ +L L E+ T+ Sbjct: 302 VNKVIRRYQDSLYLTKPFSDLTKCTLKLEQNTL 334 >gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28] gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28] Length = 283 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + V+ + Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + N+ DPSN + + R R+R++V Sbjct: 184 VKYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214 >gi|153854745|ref|ZP_01995979.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814] gi|149752652|gb|EDM62583.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814] Length = 473 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 18/210 (8%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR +V+ L H++ VSGG+DS+ LL L + + FG + + + H LR Sbjct: 14 ERVRAYVKKYHMLQEKDHVIAGVSGGADSVCLLFMLVKLQKEMRFG---LTVVHIHHGLR 70 Query: 64 -ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E+A + YV +C +L + H V + + L A R R + E N Sbjct: 71 GESADVDENYVRALCEKLDVELLAFHEDVGRYAKEQKLTLEEAGRNVRRHIFEEVCHRKN 130 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I AH +D ET+ R G GL G+ D +I RP L RR++I Sbjct: 131 GTRIALAHHQNDNAETLLWNLSR-----GCGLKGIGGISPVD-GKYI-RPLLGVRRQEIE 183 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +L + NI +C D +N +D + R R+R V Sbjct: 184 EYLKENNIDYCTDETNLEDHYTRNRLRNHV 213 >gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 480 Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + N+ DPSN + + R R+R++V Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214 >gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans DSM 12444] gi|123491176|sp|Q2GC97|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 326 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DS+ L++ + V F +VDH LR + E V+ +C Sbjct: 28 VCLAVSGGPDSLALMLLMQEV------APRDFCVATVDHGLRAESAAEAAMVAGLCEMRG 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IA+ + + + + AR+ARYA +++ A+ + ++TAH DDQ ET+ MR R Sbjct: 82 IAYHTLR-LDLAGGSAVQERARKARYAALADLARRDGLSAVVTAHHADDQAETLVMRLNR 140 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ ++ + + RP L RR ++ + + ++ DPSN D R+ER Sbjct: 141 GAGLRGLAGMRAASSVPGAGEVRLLRPLLGWRRAELVALVEDAGLAPVLDPSNHDHRYER 200 Query: 202 VRVR 205 VR+R Sbjct: 201 VRIR 204 >gi|314932731|ref|ZP_07840101.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87] gi|313654561|gb|EFS18313.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87] Length = 428 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 17/221 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL HS+L+ + + V+H LR + +E ++++ C + Sbjct: 12 AHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQK 68 Query: 80 LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V SK + AR RY E + +NA +++TAH DDQLET+ Sbjct: 69 NQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETIL 128 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + + GM D Y+ + + RP L ++DI ++ + + + ED SN D Sbjct: 129 YRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQD 185 Query: 197 DRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRVKV 230 ++ R +R R + I D H L LK+K++ D +++ Sbjct: 186 TKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQL 225 >gi|223044415|ref|ZP_03614448.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus capitis SK14] gi|222442204|gb|EEE48316.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus capitis SK14] Length = 428 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 17/221 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL HS+L+ + + V+H LR + +E ++++ C + Sbjct: 12 AHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQK 68 Query: 80 LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V SK + AR RY E + +NA +++TAH DDQLET+ Sbjct: 69 NQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETIL 128 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + + GM D Y+ + + RP L ++DI ++ + + + ED SN D Sbjct: 129 YRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQD 185 Query: 197 DRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRVKV 230 ++ R +R R + I D H L LK+K++ D +++ Sbjct: 186 TKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQL 225 >gi|149174369|ref|ZP_01852996.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797] gi|148846914|gb|EDL61250.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797] Length = 354 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 92/195 (47%), Gaps = 13/195 (6%) Query: 19 PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDE-VRYV 73 PA L+AVSGG+DSM LL AL L+ S I + + +H LR TA DE ++ Sbjct: 36 PAQRTLIAVSGGADSMALLRAL-KCLAQSSESLIPPDGLVIAHLNHGLRGTASDEDAEWL 94 Query: 74 SDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C RL + V+ K N P +GL R ARY ++ A T I AHT DD Sbjct: 95 KQECRRLSLP--CVTEKQELNQGPDSGLEEQCRTARYGFLTRVAIAEQCTQIAVAHTLDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV R GL G+ T + L + RP L+ RE++ FL + Sbjct: 153 QAETVLHHIIRGTG--ITGLRGIPQTRVLQQGLHLIRPLLQISREEVVEFLNVCGQEYRN 210 Query: 191 DPSNTDDRFERVRVR 205 D SN D F R R+R Sbjct: 211 DESNADTSFTRNRIR 225 >gi|238787216|ref|ZP_04631015.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641] gi|238724478|gb|EEQ16119.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641] Length = 461 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV SGG DS +L+ L L D+ ++K AI + H L A V + C + R Sbjct: 25 VLVGFSGGLDS-SVLLHLLVCLRDQLIPELKIRAIHIHHGLNPQADSWVMHCQQQCKQWR 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I VV +G+ AAAR ARY S H +++TA DDQ ET + +R Sbjct: 84 IPLEVVRVSIDARHSGIEAAARTARYQAFSSHLAA--DEVLLTAQHLDDQCETFLLALKR 141 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M + + + + RP L RE + ++ + + W ED SN DDRF+R Sbjct: 142 GSGPA--GLSAMAAKMPFAHSQ-LLRPLLAFSREILENYARAQQLQWIEDDSNQDDRFDR 198 Query: 202 VRVR 205 +R Sbjct: 199 NFLR 202 >gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] Length = 514 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 30/184 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +++AVSGG DS+ L H V G + +DH LR + ++ +V + RL Sbjct: 26 LVLAVSGGGDSVALA---HLVKRAGREGVV----AHLDHALRPESGGDLLFVKALAERLG 78 Query: 81 --------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +A W+ + L A ARE RYA + A+ + A I+TAHT DDQ Sbjct: 79 YPFYAERVEVARVAREWREN-----LEAVAREIRYAFLHRVAREVKAKAILTAHTLDDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ + A +G+G+ + + RP L RRE++R++L +W EDP Sbjct: 134 ETVLLKLLQGTA-RGLGIR--------EKEGLVVRPLLAFRREELRAYLKALGEAWREDP 184 Query: 193 SNTD 196 SN D Sbjct: 185 SNQD 188 >gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442] gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442] Length = 480 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG DS+ LL L L R K+K VDH R + + +++++V ++C ++ Sbjct: 29 IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + S+ Q G+ A AARE RYA + K +A + H DDQ+ET+ Sbjct: 86 GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K G +G+ + ++ RP L +E+I ++ + ++ DPSN Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202 Query: 197 DRFERVRVRRFV 208 + + R R+R++V Sbjct: 203 EVYTRNRLRKYV 214 >gi|52424859|ref|YP_087996.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] gi|61216475|sp|Q65UE9|TILS_MANSM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52306911|gb|AAU37411.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] Length = 426 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 20/206 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS LL + +R +F AI + H L A + ++C + Sbjct: 17 ILIAFSGGLDSTALLALCKKLQENRP--HFQFRAIHIHHGLSPNADKWALHCENICRQFS 74 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V + K G+ A AREARY I+ H ++ TAH +DQ ET + +R Sbjct: 75 IPLIVEKVRVDK-SNGIEAGAREARYHAIANHLNI--DEVLATAHHLNDQTETFLLALKR 131 Query: 142 DYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G+ G+ +++++ NL I RP L+ R + ++ + I+W ED SN D+ Sbjct: 132 -----GSGVQGLSAMQKESVVF--NLPIFRPLLQFTRAQLEDYVKSQKINWIEDESNEDN 184 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKF 223 ++ R F+R+I L + + F Sbjct: 185 SYD----RNFLRNIILPKMKTRWAHF 206 >gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380] gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380] Length = 456 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L D+ ++ AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDS-SVLLHLLVCLRDQFIPELMIRAIHIHHGLNPRADSWVKHCQQQCEQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A VV +G+ AAAR ARY + H T +++TA DDQ ET + + Sbjct: 83 GVALEVVRVTIDTRDSGIEAAARNARYQAFASHLAT--NEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 141 RGSGPA--GLSAMAAKRPFAHSQ-LLRPLLAFSRETLENYARAQQLQWIEDDSNQDDRFD 197 Query: 201 RVRVR 205 R +R Sbjct: 198 RNFLR 202 >gi|16272353|ref|NP_438566.1| cell cycle protein [Haemophilus influenzae Rd KW20] gi|260580533|ref|ZP_05848361.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Haemophilus influenzae RdAW] gi|1175240|sp|P44689|TILS_HAEIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1573375|gb|AAC22063.1| cell cycle protein (mesJ) [Haemophilus influenzae Rd KW20] gi|260092875|gb|EEW76810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Haemophilus influenzae RdAW] Length = 430 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 151/341 (44%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLKGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + I I N Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D L Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340 >gi|309972437|gb|ADO95638.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2846] Length = 430 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/333 (24%), Positives = 152/333 (45%), Gaps = 36/333 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A+ V++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMR- 247 R F+R+ L L + F DL V+ +N+ ++ K+ + + Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQF 247 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304 + Q L + LL L Q+ +P R + +++ +F K + Sbjct: 248 KLCQFRQYSLAKQTALLRMWL------AENQLEMPSKRQLTQLINDVVFAKEEANPQFQL 301 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 VI R + L++T+ +L L E+ + Sbjct: 302 VNKVIRRYQDSLYLTKPFSDLTKCTLKLEQNML 334 >gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17] gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17] Length = 480 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG DS+ LL L L R K+K VDH R + + +++++V ++C ++ Sbjct: 29 IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + S+ Q G+ A AARE RYA + K +A + H DDQ+ET+ Sbjct: 86 GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K G +G+ + ++ RP L +E+I ++ + ++ DPSN Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202 Query: 197 DRFERVRVRRFV 208 + + R R+R++V Sbjct: 203 EVYTRNRLRKYV 214 >gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like [Candidatus Koribacter versatilis Ellin345] gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter versatilis Ellin345] Length = 464 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR--- 79 VAVSGG+DS+ LL L L RS I S + + H +R D + ++V+D+ + Sbjct: 23 VAVSGGADSVALLRGL---LELRSELGIALSVVHLHHGIRGAEADADEQFVADLAGQFDL 79 Query: 80 -LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + V +S+ + L AAR+ RYA ++ + TAHT DDQ ETV +R Sbjct: 80 SLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDKVATAHTLDDQAETVLLR 139 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G+ +L I RP L R ++ ++L N W ED +NTD + Sbjct: 140 ILRGTGTRGLAAIPPFRDASPELAACIVRPLLGTERTEVETYLKSLNQPWREDSTNTDPK 199 Query: 199 FERVRVR 205 R R+R Sbjct: 200 HLRNRIR 206 >gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946] gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946] Length = 524 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 24/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVRYVSDVCSR 79 ++ AVSGG DS+ LL L + + F AI DH LR ++ +E +V + Sbjct: 28 VVAAVSGGGDSVALLYLLKA---------LGFEAIVAHFDHALRPSSAEEAVWVQHLAEA 78 Query: 80 L----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + V + + L A ARE RYA +S AK I+TAHT DDQ ETV Sbjct: 79 LGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFLSRVAKKYRTEAILTAHTQDDQAETV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G + T + + RP L R ++R +L + SW EDP+N Sbjct: 139 LLQLVR-----GTGRA----TGIRKRQGRVVRPLLGFTRAELRGYLRAKGASWLEDPTNQ 189 Query: 196 DDRFERVRVRRFV 208 D +R +R V Sbjct: 190 DPALDRNYLRHEV 202 >gi|148825315|ref|YP_001290068.1| pyridoxine kinase [Haemophilus influenzae PittEE] gi|226695539|sp|A5UA84|TILS_HAEIE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148715475|gb|ABQ97685.1| pyridoxine kinase [Haemophilus influenzae PittEE] Length = 430 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEILVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNGDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 308 RYQDRLYLTKPFSDLTKYCLKLEQNTL 334 >gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W] gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99] gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108] gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820] gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102] gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus anthracis CI] gi|61216513|sp|Q6HPV4|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W] gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108] gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99] gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820] gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102] gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI] Length = 476 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|269302798|gb|ACZ32898.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pneumoniae LPCoLN] Length = 319 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 17/200 (8%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F SL L+A+SGGSDS+ L +L +R + F+A+ +DH R T+ E Sbjct: 16 LFFASLDVKKRYLLALSGGSDSLFLFY----LLKERG---VSFTAVHIDHGWRSTSAQEA 68 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + ++C+R + + + + L AR+ RYA + E + ++A I AH + Sbjct: 69 KELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLAHHAN 128 Query: 130 DQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DQ ETV R S K M + +L + RP L + ++ L R I Sbjct: 129 DQAETVLKRLLESAHLTNLKAMAERSYVEDVL------LLRPLLHIPKSSLKEALDARGI 182 Query: 187 SWCEDPSNTDDRFERVRVRR 206 S+ +DPSN D+R+ R R+R+ Sbjct: 183 SYVQDPSNEDERYLRARMRK 202 >gi|22126993|ref|NP_670416.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM 10] gi|45442556|ref|NP_994095.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108806535|ref|YP_650451.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Antiqua] gi|108813098|ref|YP_648865.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|145598932|ref|YP_001163008.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides F] gi|149366937|ref|ZP_01888970.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125] gi|162418463|ref|YP_001607754.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola] gi|165927115|ref|ZP_02222947.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165939833|ref|ZP_02228373.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. IP275] gi|166011914|ref|ZP_02232812.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. E1979001] gi|166211335|ref|ZP_02237370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. B42003004] gi|167399756|ref|ZP_02305274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419749|ref|ZP_02311502.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425306|ref|ZP_02317059.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470891|ref|ZP_02335595.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis FV-1] gi|218928230|ref|YP_002346105.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CO92] gi|229837769|ref|ZP_04457929.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A] gi|229840991|ref|ZP_04461150.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843092|ref|ZP_04463242.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229903541|ref|ZP_04518654.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|270487322|ref|ZP_06204396.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27] gi|294503079|ref|YP_003567141.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003] gi|61217402|sp|Q8ZH50|TILS_YERPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21960038|gb|AAM86667.1|AE013912_11 cell cycle protein [Yersinia pestis KIM 10] gi|45437421|gb|AAS62972.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Yersinia pestis biovar Microtus str. 91001] gi|108776746|gb|ABG19265.1| hypothetical protein YPN_2938 [Yersinia pestis Nepal516] gi|108778448|gb|ABG12506.1| hypothetical protein YPA_0538 [Yersinia pestis Antiqua] gi|115346841|emb|CAL19727.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145210628|gb|ABP40035.1| hypothetical protein YPDSF_1650 [Yersinia pestis Pestoides F] gi|149290551|gb|EDM40627.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125] gi|162351278|gb|ABX85226.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola] gi|165912236|gb|EDR30873.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. IP275] gi|165921011|gb|EDR38235.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165989180|gb|EDR41481.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. E1979001] gi|166207106|gb|EDR51586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. B42003004] gi|166962490|gb|EDR58511.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050464|gb|EDR61872.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055706|gb|EDR65490.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679311|gb|EEO75414.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|229689968|gb|EEO82027.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229697357|gb|EEO87404.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704146|gb|EEO91158.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A] gi|262361117|gb|ACY57838.1| hypothetical protein YPD4_0929 [Yersinia pestis D106004] gi|270335826|gb|EFA46603.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27] gi|294353538|gb|ADE63879.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003] gi|320014196|gb|ADV97767.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 460 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 6/181 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++ AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV Q G+ AAAR ARY S A +++TA DDQ ET + + Sbjct: 83 KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197 Query: 201 R 201 R Sbjct: 198 R 198 >gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7] gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7] Length = 486 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 23/230 (10%) Query: 6 IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61 ++SV F ++ A I+ VSGG DSM LL L ++ FGK A VDH Sbjct: 15 VKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGKSSVIIAAHVDHQ 69 Query: 62 LRETAKDE-VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116 R + +E +++V C I V S K + AAAR+ RY + Sbjct: 70 FRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAK 129 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A + AH DDQ+ET+ MR + G GL+GM + L I RPFL +++ Sbjct: 130 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREFASGLLI-RPFLYAAKDE 186 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKM 220 I + Q +S+ D SNT D + R R R+ V D+H ++ K+ Sbjct: 187 ILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKV 236 >gi|157364389|ref|YP_001471156.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO] gi|166988068|sp|A8F7F8|TILS_THELT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157314993|gb|ABV34092.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO] Length = 447 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 31/289 (10%) Query: 16 LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L++P H +LVA+SGG DSM LL L L R + A ++H +RE A + ++V Sbjct: 19 LIFPGHKVLVALSGGMDSMSLLNIL---LKLRQKLNCEIFAAHLNHMIRENAIRDEQFVY 75 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C + + V + K + G+ AR ARY ++ A LI AH +D Sbjct: 76 SYCKKAGVKIFVERFDVPKFCADRKIGIEEGARAARYTFLNRIAHENGIDLIALAHNLND 135 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ R R G GLSG+ L D N RP L +RE I +++ + NI + + Sbjct: 136 LVETILYRIVR-----GTGLSGIVCMKLKDENKI--RPLLYFKREQIEAYIKRNNIPYVQ 188 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAMLIPKYLT 243 D +N + ++ R +R + + AL L ++ +V+ N V LI KY Sbjct: 189 DETNFNLKYSRNYIRHRI----VPALKLLNSDLENAFSQVHFSGMMLENHVKRLIKKYSE 244 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVM 291 R I D ++D + L++ C GQ+++ YR ++ V+ Sbjct: 245 RIFRCGKRIIFDSKDMDEFEIIELVKY----CAGQMNVDLNYRQIQLVV 289 >gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames] gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne] gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488] gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442] gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193] gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465] gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389] gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174] gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I] gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684] gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248] gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066] gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western North America USA6153] gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B] gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum] gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia 94] gi|61216616|sp|Q81VX7|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames] gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488] gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193] gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442] gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389] gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465] gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174] gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I] gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684] gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248] Length = 476 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1] gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1] Length = 279 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|51597300|ref|YP_071491.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP 32953] gi|186896405|ref|YP_001873517.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+] gi|61217229|sp|Q667K7|TILS_YERPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51590582|emb|CAH22223.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|186699431|gb|ACC90060.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+] Length = 460 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++ AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV Q G+ AAAR ARY S A +++TA DDQ ET + + Sbjct: 83 KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197 Query: 201 RVRVR 205 R +R Sbjct: 198 RNFLR 202 >gi|46579870|ref|YP_010678.1| hypothetical protein DVU1459 [Desulfovibrio vulgaris str. Hildenborough] gi|46449286|gb|AAS95937.1| conserved domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234129|gb|ADP86983.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris RCH1] Length = 390 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 12/192 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R C L Sbjct: 64 HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V V + + G A R+ARY L++ + A I T H D E V Sbjct: 121 GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 180 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G +CD I RP L ++ + +FL +SW EDPSN Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 235 Query: 197 DRFERVRVRRFV 208 D + R R+R V Sbjct: 236 DTYLRNRMRHGV 247 >gi|329122279|ref|ZP_08250867.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116] gi|327473840|gb|EGF19257.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116] Length = 430 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 22/326 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + R + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDKT-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + ++L+ + I RP L R + ++ + ++W D SN D+RF+ Sbjct: 137 GSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRFD- 192 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ---RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248 Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311 F Y L A + Q+ +P R + +++ +F K + VI R Sbjct: 249 LCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIRR 308 Query: 312 RANFLWITRAVRNLPTLILYPEETTV 337 + L++T+ +L L E+ T+ Sbjct: 309 YQDSLYLTKRFSDLTKYCLKLEQNTL 334 >gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 480 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam] gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42] gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1] gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam] gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1] gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42] gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 480 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51] gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 472 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 22/291 (7%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ P + IL AVSGG DS+ L L + D+ KI V H +RE + DE + V Sbjct: 12 QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71 Query: 74 SDVCSRLRIA---HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ I H S KN G AARE RYA E + N TL+ TAH Sbjct: 72 QNMARDWEIPCLIHRFDS-KNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHL 130 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ETV R R G G +G+ +Y + RP L +EDI + + + Sbjct: 131 GDQAETVLYRLLR-----GSGTAGLAG--IYPQKGKLIRPLLTVTKEDILEYCRNEKLPY 183 Query: 189 CEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPK 240 D SN + + R ++R R+ + + + + LR + V + Sbjct: 184 ALDHSNEEPVYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKR 243 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + + + + I + +L L+R +A + G+ ++ +E+VM Sbjct: 244 WAILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVM 294 >gi|184152910|ref|YP_001841251.1| cell cycle protein [Lactobacillus reuteri JCM 1112] gi|183224254|dbj|BAG24771.1| cell cycle protein [Lactobacillus reuteri JCM 1112] Length = 477 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R VRS + ++VAVS G DSM LL L + S + + ++H LR+ ++ Sbjct: 23 RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 79 Query: 68 DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R++ C + + +V W ++ PQTG+ AAR+ARY + K A++++TAH Sbjct: 80 LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 139 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D ET+ M+ R + L G+ D + I RP L ++ ++ + LQ ++ Sbjct: 140 HQNDLAETMLMKMTR--GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQHHL 196 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 W ED +N D +R R R + Sbjct: 197 KWYEDKTNKDLNIQRNRFRHAI 218 >gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Bacillus anthracis str. A2012] Length = 480 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479] gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479] Length = 462 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M +ES+R F+ LV +++ +SGG+DS+ LL+ LH + ++ + I+ A+ Sbjct: 1 MHRKILESIREFIGENHMLVPGDRVIIGLSGGADSVSLLMILHELKNELN---IELFAVH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE 112 V H LR E A + Y ++ L + H+ V+ A R RY ++ E Sbjct: 58 VHHGLRGEEADRDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEE 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171 +A+ I AH DDQ ETV R KG+G + + DTI+ RP L Sbjct: 118 QRLAHHASKIAVAHHADDQAETVLYNLFRGSGLKGIGGMKPVRDTII--------RPLLS 169 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R++I ++L ++ IS+CED +N+ + R R+R + Sbjct: 170 VTRKEILAYLEEKEISYCEDSTNSGTDYIRNRLRHEI 206 >gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4] gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4] Length = 283 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG DS+ LL L L R K+K VDH R + + +++++V ++C ++ Sbjct: 29 IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + S+ Q G+ A AARE RYA + K +A + H DDQ+ET+ Sbjct: 86 GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K G +G+ + ++ RP L +E+I ++ + ++ DPSN Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202 Query: 197 DRFERVRVRRFV 208 + + R R+R++V Sbjct: 203 EVYTRNRLRKYV 214 >gi|15618905|ref|NP_225191.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|15836528|ref|NP_301052.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|16752030|ref|NP_445396.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39] gi|33242366|ref|NP_877307.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] gi|61216756|sp|Q9Z6R2|TILS_CHLPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4377326|gb|AAD19134.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189770|gb|AAF38647.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39] gi|8979370|dbj|BAA99204.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236877|gb|AAP98964.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] Length = 319 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 17/200 (8%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F SL L+A+SGGSDS+ L +L +R + F+A+ +DH R T+ E Sbjct: 16 LFFASLDVKKRYLLALSGGSDSLFLFY----LLKERG---VSFTAVHIDHGWRSTSAQEA 68 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + ++C+R + + + + L AR+ RYA + E + ++A I AH + Sbjct: 69 KELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLAHHAN 128 Query: 130 DQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DQ ETV R S K M + +L + RP L + ++ L R I Sbjct: 129 DQAETVLKRLLESAHLTNLKAMAERSYVEDVL------LLRPLLHIPKSSLKEALDARGI 182 Query: 187 SWCEDPSNTDDRFERVRVRR 206 S+ +DPSN D+R+ R R+R+ Sbjct: 183 SYLQDPSNEDERYLRARMRK 202 >gi|325681847|ref|ZP_08161366.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri MM4-1A] gi|324978938|gb|EGC15886.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri MM4-1A] Length = 470 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R VRS + ++VAVS G DSM LL L + S + + ++H LR+ ++ Sbjct: 16 RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R++ C + + +V W ++ PQTG+ AAR+ARY + K A++++TAH Sbjct: 73 LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 132 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D ET+ M+ R + L G+ D + I RP L ++ ++ + LQ ++ Sbjct: 133 HQNDLAETMLMKMTR--GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQHHL 189 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 W ED +N D +R R R + Sbjct: 190 KWYEDKTNKDLNIQRNRFRHAI 211 >gi|170023333|ref|YP_001719838.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII] gi|169749867|gb|ACA67385.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++ AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV Q G+ AAAR ARY S A +++TA DDQ ET + + Sbjct: 83 KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197 Query: 201 RVRVR 205 R +R Sbjct: 198 RNFLR 202 >gi|153947345|ref|YP_001400015.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP 31758] gi|254764826|sp|A7FFI7|TILS_YERP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|152958840|gb|ABS46301.1| tRNA(Ile)-lysidine synthase [Yersinia pseudotuberculosis IP 31758] Length = 451 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++ AI + H L A V++ C + Sbjct: 15 HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 73 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV Q G+ AAAR ARY S A +++TA DDQ ET + + Sbjct: 74 KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 131 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 132 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 188 Query: 201 RVRVR 205 R +R Sbjct: 189 RNFLR 193 >gi|153952817|ref|YP_001393582.1| TilS [Clostridium kluyveri DSM 555] gi|146345698|gb|EDK32234.1| TilS [Clostridium kluyveri DSM 555] Length = 462 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 140/311 (45%), Gaps = 46/311 (14%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS IE + F R ++VAVSGG DS+ LL L+ VL +R I A V+HCL Sbjct: 6 LSTIEENKMFNRG----DKVIVAVSGGPDSICLLHMLY-VLQNRL--DITLYAAHVNHCL 58 Query: 63 R--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 R E KDE YV C L + + V++ + + +A RE RY E K Sbjct: 59 RGEEGDKDE-EYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKK 117 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A I AH +DQ ETV MR R G GL G+ N+++ RP +R R++ Sbjct: 118 LKAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVFV-RPLIRITRDE 171 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227 I + N+ D +N + + R ++R F RDI + + D+ Sbjct: 172 IEKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDI-----VAVLNRLSDI- 225 Query: 228 VKVNNAVAMLI-----PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 +K++N I KY + + +I + L D +L ++R+S + G + Sbjct: 226 IKIDNDYLNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL--- 281 Query: 283 GYRSMERVMLF 293 + +E++ +F Sbjct: 282 --KDIEKIHIF 290 >gi|148543503|ref|YP_001270873.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016] gi|227363652|ref|ZP_03847766.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3] gi|148530537|gb|ABQ82536.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016] gi|227071321|gb|EEI09630.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3] Length = 464 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 15/205 (7%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R VRS + ++VAVS G DSM LL L + S + + ++H LR+ ++ Sbjct: 10 RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 66 Query: 68 DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R++ C + + +V W ++ PQTG+ AAR+ARY + K A++++TAH Sbjct: 67 LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 +D ET+ M+ R G LS G+ D + I RP L ++ ++ + LQ Sbjct: 127 HQNDLAETMLMKMTR-----GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQ 180 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 ++ W ED +N D +R R R + Sbjct: 181 HHLKWYEDKTNKDLNIQRNRFRHAI 205 >gi|225571157|ref|ZP_03780155.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM 15053] gi|225159988|gb|EEG72607.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM 15053] Length = 477 Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ VSGG+DS+ LL L + + F +A+ V H LR ETA + +YV +C Sbjct: 42 VIAGVSGGADSICLLFVLLELKKEIGFS---VTAVHVHHGLRAETADRDAQYVEKICREQ 98 Query: 81 RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ H V ++ + + A RE R A E + T I AH +D ET+ Sbjct: 99 KVELLVYHEDVKTYAAEHKLTVEEAGREVRRAAFKEVLRKKQGTKIALAHHQNDNAETLL 158 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL GM + +WI P L +R+++ S+L +R IS+C D +N++ Sbjct: 159 LNLCR-----GTGLKGMGGIPPVE-GVWIH-PLLCLKRKEVESYLEERGISYCTDETNSE 211 Query: 197 DRFERVRVRRFV 208 D + R ++R V Sbjct: 212 DSYARNKIRNQV 223 >gi|301169106|emb|CBW28703.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae 10810] Length = 430 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 86/341 (25%), Positives = 153/341 (44%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + N++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKENLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D L Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340 >gi|294012454|ref|YP_003545914.1| cell cycle protein MesJ [Sphingobium japonicum UT26S] gi|292675784|dbj|BAI97302.1| cell cycle protein MesJ [Sphingobium japonicum UT26S] Length = 314 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 34/187 (18%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VAVSGG DSM LL L+ R+F G+++ A +VDH LR+ + E V+D C I Sbjct: 28 VAVSGGPDSMALLD-----LAARAFPGRVE--AATVDHGLRDASAVEAAMVADWCRDGGI 80 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 AH+ + + + + AR RYAL+ E ++TAH DDQLET+ MR R Sbjct: 81 AHATLH-PQGAVRGNVQSWARAQRYALLEEWRAARGLDWLLTAHHADDQLETLLMRLNRG 139 Query: 143 Y---------AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 A +G + RP L R+ D+ ++ L+R + +DPS Sbjct: 140 AGVGGLAGVRARQGA----------------VLRPLLGMRKADLLAYALERGLPHVDDPS 183 Query: 194 NTDDRFE 200 N D RF+ Sbjct: 184 NGDARFD 190 >gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2] gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2] Length = 472 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 22/291 (7%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ P + IL AVSGG DS+ L L + D+ KI V H +RE + DE + V Sbjct: 12 QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71 Query: 74 SDVCSRLRIA---HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ I H S KN G AARE RYA E + N TL+ TAH Sbjct: 72 QNMARDWEIPCLIHRFDS-KNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHL 130 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ETV R R G G +G+ +Y + RP L +EDI + + + Sbjct: 131 GDQAETVLYRLLR-----GSGTAGLAG--IYPQKGKLIRPLLTVTKEDILEYCRNEKLPY 183 Query: 189 CEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPK 240 D SN + + R ++R R+ + + + + LR + V + Sbjct: 184 ALDHSNEEPIYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKR 243 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + + + + I + +L L+R +A + G+ ++ +E+VM Sbjct: 244 WAILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVM 294 >gi|78357070|ref|YP_388519.1| ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219475|gb|ABB38824.1| Ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 357 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +L A SGG+DS LL+ LH L+ R + A+ +DH LR+ + D+ +VS +CS Sbjct: 58 MLAACSGGADSTALLLILH-YLAPRMGHTV--VAVHLDHALRQESADDAHFVSQLCSAAG 114 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL + V+ + + GL A R+ARYA ++ A + +I T H DD E V M Sbjct: 115 IRLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDVLM 174 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G GM ++ + +L RP L + + +FL W ED SN+D Sbjct: 175 RLIRGAGWPALG--GM-QAVIPERSLL--RPLLVTEKYKLTTFLEACRCPWREDASNSDP 229 Query: 198 RFERVRVRRFV 208 F R R+R + Sbjct: 230 SFTRNRIRNTI 240 >gi|198283303|ref|YP_002219624.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665676|ref|YP_002425891.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247824|gb|ACH83417.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517889|gb|ACK78475.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 464 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 12/187 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS LL+AL S+ + A+ VDH + R+ + L Sbjct: 29 LYVAYSGGGDSTALLVALLSL-------GYEIHALHVDHGWHPDSAQWARFCQEQAKALG 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +++ P G AR ARYAL++ A+ + TA +DQ ETV ++ R Sbjct: 82 VPFTLLHLAADTPGEGPEDQARRARYALMA--AQLRQGDWLFTAQHREDQAETVLLQLLR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G L+GM L + RP L R+ +R +L QR + + DP+N D R++R Sbjct: 140 GTGVAG--LAGMPRQRPLGAGL-LVRPLLDVPRQVLRDYLEQRQLPFLNDPANADMRYDR 196 Query: 202 VRVRRFV 208 VR+RR + Sbjct: 197 VRIRRIL 203 >gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 480 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Brevibacterium mcbrellneri ATCC 49030] gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Brevibacterium mcbrellneri ATCC 49030] Length = 326 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 12/198 (6%) Query: 9 VRFFVRSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +R V + P H L+AVSGG+DSM L A + L+ + + +F A++VDH L+E + Sbjct: 14 IRKAVEDALEPGHTYLIAVSGGADSMSLAAAC-AFLTRKDY---EFVAVTVDHGLQEGSA 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + L + +V + + + GL A AR ARYA + AK A ++ AHT Sbjct: 70 EVAARTQRALTDLGLTATVETAEVTATSDGLEADARTARYAALDRVAKERGAAGVLLAHT 129 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ ETV + R + L+GM +I RP L R + S +NI Sbjct: 130 QNDQAETVLLGLLRGSGAR--SLAGMRPRA----GRYI-RPLLGITRAETESATTAQNIP 182 Query: 188 WCEDPSNTDDRFERVRVR 205 DP N+D F RV+VR Sbjct: 183 VWNDPMNSDPSFTRVKVR 200 >gi|219853482|ref|YP_002470604.1| hypothetical protein CKR_0139 [Clostridium kluyveri NBRC 12016] gi|219567206|dbj|BAH05190.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 140/311 (45%), Gaps = 46/311 (14%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS IE + F R ++VAVSGG DS+ LL L+ VL +R I A V+HCL Sbjct: 9 LSTIEENKMFNRG----DKVIVAVSGGPDSICLLHMLY-VLQNRL--DITLYAAHVNHCL 61 Query: 63 R--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 R E KDE YV C L + + V++ + + +A RE RY E K Sbjct: 62 RGEEGDKDE-EYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKK 120 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A I AH +DQ ETV MR R G GL G+ N+++ RP +R R++ Sbjct: 121 LKAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVFV-RPLIRITRDE 174 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227 I + N+ D +N + + R ++R F RDI + + D+ Sbjct: 175 IEKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDI-----VAVLNRLSDI- 228 Query: 228 VKVNNAVAMLI-----PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 +K++N I KY + + +I + L D +L ++R+S + G + Sbjct: 229 IKIDNDYLNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL--- 284 Query: 283 GYRSMERVMLF 293 + +E++ +F Sbjct: 285 --KDIEKIHIF 293 >gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 440 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL ++V+ + + V+H +RE AK++ +V D+C + Sbjct: 21 LLLAISGGPDSMYLL---YNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFVIDICKKFN 77 Query: 82 IAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I +++ V+ + + A A R RY E+A + I+TAH +DQ ET+ Sbjct: 78 INYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLNDQAETILT 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G+ G+ + ++ N I RP L R I +L + N+ + D +N Sbjct: 135 RIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYVIDETNLKS 187 Query: 198 RFERVRVR 205 + R R+R Sbjct: 188 DYTRNRIR 195 >gi|84495023|ref|ZP_00994142.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649] gi|84384516|gb|EAQ00396.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649] Length = 320 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%) Query: 9 VRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 VR+ VRS + A +LVA SGG DSM L A+ S+ A+ VDH L+ Sbjct: 11 VRYAVRSSLADIAPDAVVLVACSGGGDSMALAEAVAHEARRASW---SAGAVVVDHGLQA 67 Query: 65 TAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + D + RLR V +GL +AAR+ARYA +S A + A Sbjct: 68 GSAD---VAARAAGRLRDLGLGPVVVERVAVVDNGSGLESAARDARYAALSGVADRLGAA 124 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRS 179 +++ HT +DQ E V + R + L+GM +Y RP L R + R Sbjct: 125 VVVVGHTLEDQAEQVLLGLVRGSGAR--SLAGMASVRGIY------RRPLLGVTRAECRE 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 L + W +DP N D F RVR RR V D++ Sbjct: 177 SLKAEGVEWWDDPMNDDAAFTRVRARRAVADLE 209 >gi|120602664|ref|YP_967064.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4] gi|120562893|gb|ABM28637.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4] Length = 390 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 12/192 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R C L Sbjct: 64 HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V V + + G A R+ARY L++ + A I T H D E V Sbjct: 121 GIPLAVHTLAVDELAAVWRVGTEEAGRKARYDLLAAALPSAAADWICTGHHLGDLAEDVL 180 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G +CD I RP L ++ + +FL +SW EDPSN Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTGKDRLEAFLATLGVSWTEDPSNAS 235 Query: 197 DRFERVRVRRFV 208 D + R R+R V Sbjct: 236 DTYLRNRMRHGV 247 >gi|268608652|ref|ZP_06142379.1| cell cycle protein MesJ [Ruminococcus flavefaciens FD-1] Length = 457 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 22/191 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++ +SGG+DS+GLL+AL+ + R I A+ V+HCLR E+ +DE + +CSR Sbjct: 21 VVCGLSGGADSVGLLLALYEL---REKLGINVEALHVNHCLRGEESDRDE-EFCCHLCSR 76 Query: 80 LRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I S V K+ + L AAR+ RY + +++ I TAH +D LETV Sbjct: 77 LGIPFSAFRVDVKSYAKEHSLSDEEAARKLRYGVFEANSQ---GKKIATAHNANDNLETV 133 Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R A KGM G+ + I+ RP L RE+I +FL +R + D +N Sbjct: 134 ILNLARGSALKGMAGIPVRRNNII--------RPLLTVSREEIEAFLSERGQEFVTDSTN 185 Query: 195 TDDRFERVRVR 205 D + R ++R Sbjct: 186 LSDDYTRNKIR 196 >gi|42526849|ref|NP_971947.1| hypothetical protein TDE1341 [Treponema denticola ATCC 35405] gi|61217302|sp|Q73N15|TILS_TREDE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41817164|gb|AAS11858.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 460 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 22/197 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSD 75 P +L+AVSGG+DSM +L A + SD + + ++V+H +R ET D ++V D Sbjct: 29 PLRLLLAVSGGADSMAMLSAFLELKSDIN---AEIFVLTVNHNIRPEKETLGD-AQFVLD 84 Query: 76 VCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C+ I + V + +TG+ AAR RY + A ++NA I+TAH + Sbjct: 85 FCNDKCPCILAEIPKNTVFDEAKNRKTGIEDAARFLRYNEFEKAADSLNADYILTAHNKN 144 Query: 130 DQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ETV MR Q E MG+S + RP L R +I +L ++NI W Sbjct: 145 DNYETVLMRLFQGSEPEALMGISPRRGRFI--------RPMLNISRSEIEEYLKEKNIPW 196 Query: 189 CEDPSNTDDRFERVRVR 205 ED +N + + R +VR Sbjct: 197 REDATNLEASYLRNKVR 213 >gi|325295220|ref|YP_004281734.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065668|gb|ADY73675.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 454 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 15/190 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 + +LVA+SGG DS+ LL H +L + KI +A ++H LR E+ +DE +V +C Sbjct: 20 SKVLVALSGGPDSVTLL---HILLQLKEKLKIDIAAAHLNHMLRGEESERDE-NFVKKLC 75 Query: 78 SRLRIA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S I + K + A ARE RY + E K IN I T HT D +ETV Sbjct: 76 SDWGIPLFTKRENIKEISKGKNIEAVAREVRYRFLEETLKKINGDYIATGHTASDLVETV 135 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + KG G+ G + I RP RE+I +++ + NI + D SN Sbjct: 136 ILN-----LTKGTGIKGFRG--FFPKREKIIRPLFEVTREEIENYIKENNIPFVVDSSNL 188 Query: 196 DDRFERVRVR 205 FER +R Sbjct: 189 KTEFERNLIR 198 >gi|61216557|sp|Q72C25|TILS_DESVH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 347 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 12/196 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R Sbjct: 17 VRNCHCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTF 73 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I +V V + + G A R+ARY L++ + A I T H D Sbjct: 74 CHALGIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E V MR R +G +CD I RP L ++ + +FL +SW EDP Sbjct: 134 EDVLMRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDP 188 Query: 193 SNTDDRFERVRVRRFV 208 SN D + R R+R V Sbjct: 189 SNASDTYLRNRMRHGV 204 >gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 407 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 35/337 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 VSGG DS+ + LH + + K+ A++V+H LR ++ E +V L Sbjct: 1 VSGGVDSV---VLLHLMTNWAKKNKLLLPIALTVNHGLRPESQKEADFVVSYAKELGAKE 57 Query: 85 S-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 S +++W+ + + AR+ARY L++E K N ++ AH DDQ ET +R Sbjct: 58 SFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLR----- 112 Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 E+G G+ G+ D + ++I RP L R +I + + W ED SN D ++ R Sbjct: 113 LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNHDLKYRR 172 Query: 202 VRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAMLIPKYLTVHMRS 248 R ++ D L AL++K R+ N+ V + Y+ + + Sbjct: 173 TLYRNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSE 232 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGR 306 + ++I LL S + P Y S+ + + K C G Sbjct: 233 FYQLPEEI-------ALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSGC 285 Query: 307 VVIDRRANFLWITRAVRNLPTLILYP-EETTVWDGRY 342 + N L I + R + P E T WD R+ Sbjct: 286 KIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRF 322 >gi|227544681|ref|ZP_03974730.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A] gi|227185327|gb|EEI65398.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A] Length = 470 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R VRS + ++VAVS G DSM LL L + S + + ++H LR+ ++ Sbjct: 16 RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHELRKQSE 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R++ C + + +V W ++ PQTG+ AAR+ARY E K A++++TAH Sbjct: 73 LEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQASILLTAH 132 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D ET+ M+ R + L G+ D + I RP L ++ ++ + LQ ++ Sbjct: 133 HQNDLAETMLMKMAR--GGQLSQLVGIRDWRPFASGTLI-RPLLPFSKQQLKKYALQHHL 189 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 W ED +N D +R R R + Sbjct: 190 KWYEDKTNKDLSIQRNRFRHAI 211 >gi|53804114|ref|YP_114243.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath] gi|61216455|sp|Q607F5|TILS_METCA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53757875|gb|AAU92166.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath] Length = 439 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 15/189 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL + V R I AI V H ++ A R+ + V R +A Sbjct: 20 VAFSGGLDSAVLLDLMCQV---RRVSGIGVRAIHVHHGIQPEADAWSRHCAAVADRYGVA 76 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ S+P AAAR ARY S A +++TA DDQ ET+ ++ R Sbjct: 77 LDILQIDGRSRPGDSPEAAARTARYH--SLEASLDPGDILVTAQHLDDQAETLLLQLLR- 133 Query: 143 YAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL+G M + + + + + RP LR R DI ++ +R +SW EDPSN D+R+ Sbjct: 134 ----GAGLAGLAAMPNAVPFGAGI-LHRPLLRFGRRDILAYAQERGLSWIEDPSNRDERY 188 Query: 200 ERVRVRRFV 208 +R +RR + Sbjct: 189 DRNFIRRRI 197 >gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171] gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171] Length = 476 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|238784898|ref|ZP_04628898.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970] gi|238714215|gb|EEQ06227.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970] Length = 451 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LV SGG DS +L+ L + D+ ++K AI + H L A V++ C R +I Sbjct: 26 LVGFSGGLDS-SVLLHLLVCIRDQLIPELKVRAIHIHHGLNPRADGWVKHCQQQCERWQI 84 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 VV G+ AAAR ARY S H +++TA DDQ ET + +R Sbjct: 85 PLEVVRVSIDPRHNGIEAAARSARYQAFSSHLAA--DEVLLTAQHLDDQCETFLLALKRG 142 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M + + + + RP L RE + ++ + + W ED SN DDRF+R Sbjct: 143 SGPA--GLSAMAARMPFAHSQ-LLRPLLTLSRETLENYARIQQLQWIEDDSNQDDRFDR 198 >gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B] gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B] Length = 440 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL ++V+ + + V+H +RE AK++ +V D+C + Sbjct: 21 LLLAISGGPDSMYLL---YNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFVIDICKKFN 77 Query: 82 IAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I +++ V+ + + A A R RY E+A + I+TAH +DQ ET+ Sbjct: 78 INYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLNDQAETILT 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G+ G+ + ++ N I RP L R I +L + N+ + D +N Sbjct: 135 RIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYVIDETNLKS 187 Query: 198 RFERVRVR 205 + R R+R Sbjct: 188 DYTRNRIR 195 >gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4] gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4] Length = 480 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15] gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24] gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550] gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550] gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24] gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15] gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 480 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264] gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264] Length = 476 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579] gi|61216614|sp|Q81J84|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579] Length = 476 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|300909077|ref|ZP_07126540.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri SD2112] gi|300894484|gb|EFK87842.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri SD2112] Length = 464 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R VRS + ++VAVS G DSM LL L + S + + ++H LR+ ++ Sbjct: 10 RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHELRKQSE 66 Query: 68 DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R++ C + + +V W ++ PQTG+ AAR+ARY E K A++++TAH Sbjct: 67 LEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQASILLTAH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS----RPFLRCRREDIRSFLL 182 +D ET+ M+ R G LS + + D + S RP L ++ ++ + L Sbjct: 127 HQNDLAETMLMKMAR-----GGQLSQLVG--IRDWRPFASGTLIRPLLPFSKQQLKKYAL 179 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 Q ++ W ED +N D +R R R + Sbjct: 180 QHHLKWYEDKTNKDLSIQRNRFRHAI 205 >gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208] gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3] Length = 472 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 6 IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61 ++SV F ++ A I+ VSGG DSM LL L ++ FGK A VDH Sbjct: 1 MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGKSSVIIAAHVDHQ 55 Query: 62 LRETAKDE-VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116 R + +E +++V C I V S K + AAAR+ RY + Sbjct: 56 FRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAK 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A + AH DDQ+ET+ MR + G GL+GM + L I RPFL +++ Sbjct: 116 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREFASGLLI-RPFLYAAKDE 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKK 222 I + Q +S+ D SNT D + R R R+ V D+H ++ K+ + Sbjct: 173 ILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSE 224 >gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp. subtilis str. 168] gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp. subtilis str. SMY] gi|8039814|sp|P37563|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 472 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77 A I+V VSGG DSM LL ALH+ L RS I A VDH R +E +R+V C Sbjct: 18 ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73 Query: 78 -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L + ++ + GL AAAR+ RY E A + AH DDQ+ET Sbjct: 74 AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M+ + G GL+GM + I RPFL +E+I + + +S+ D SN Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEILHYCHENGLSYRTDESN 190 Query: 195 TDDRFERVRVRRFV 208 D + R R R+ V Sbjct: 191 AKDDYTRNRFRKTV 204 >gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto BEST195] Length = 472 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77 A I+V VSGG DSM LL ALH+ L RS I A VDH R +E +R+V C Sbjct: 18 ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73 Query: 78 -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L + ++ + GL AAAR+ RY E A + AH DDQ+ET Sbjct: 74 AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M+ + G GL+GM + I RPFL +E+I + + +S+ D SN Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEILHYCRENGLSYRTDESN 190 Query: 195 TDDRFERVRVRRFV 208 D + R R R+ V Sbjct: 191 AKDDYTRNRFRKTV 204 >gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676] gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676] Length = 480 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L I + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231 + + N+ DPSN + + R R+R++V + +H +KFQ V++ Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis] Length = 486 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 15/211 (7%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV+ F+ + A I+V VSGG DSM LL ALH+ L RS I A VDH Sbjct: 15 VKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRF 70 Query: 63 RETAKDE-VRYVSDVC--SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTI 117 R +E +R+V C +L + ++ + GL AAAR+ RY E Sbjct: 71 RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 130 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E+I Sbjct: 131 QADYLALAHHGDDQVETMLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEI 187 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + +S+ D SN D + R R R+ V Sbjct: 188 LHYCHENGLSYRTDESNAKDDYTRNRFRKTV 218 >gi|77360937|ref|YP_340512.1| lysidine forming enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76875848|emb|CAI87069.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas haloplanktis TAC125] Length = 467 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 152/328 (46%), Gaps = 19/328 (5%) Query: 24 VAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VA+SGG DS+ LL +H++ + D + ++ SAI + H L + A D + +C+ L + Sbjct: 59 VALSGGVDSVVLLHLMHALRVQDPA---LQVSAIYIHHGLSQYADDWQVFCQTLCNELNV 115 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +T L A AR+ARY + E + + ++I+ +DQ+ET +R +R Sbjct: 116 PFQTAKVNIEQQSRTSLEAQARDARYQALDELSP--HGSIILLGQHLNDQIETFLLRLKR 173 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G T+ + RP L +R DI +F Q ++ D SNTD+RFER Sbjct: 174 GSGLKGLGAMQRERTLTSGRLCF--RPLLAVKRSDIEAFAAQYALNHVTDDSNTDERFER 231 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R+ V I L A + ++ + + L+ +Y + + + SQ LNI + Sbjct: 232 NFMRQQVVPI-LAARFNGFEQCTARSISLLQQQHALLNEYTHIDLTQCVN-SQQALNISA 289 Query: 262 TLLFYLLRVSAAICGG----QISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRAN 314 F +R + + LP + +E+++ + K+ + + + I R Sbjct: 290 IAKFTPIRTANVVRAWLELFTHVLPSQKQLEQIINQAIAAKTDAQMLIELSDGQIRRHQG 349 Query: 315 FLW-ITRAVRNLPTLILYPEETTVWDGR 341 L+ + + L +++ E + DGR Sbjct: 350 HLYFVVPRTQILNNILITRSELKLADGR 377 >gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23] gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23] Length = 509 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 20/184 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGG DS+ L H V R G+ A +DH LR + +++ +V D+ RL Sbjct: 21 LVLAVSGGGDSVALA---HLV---RRAGRRAVVAY-LDHALRPDSGEDLLFVRDLAFRLG 73 Query: 82 I---AHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V + +K + L A ARE RYA + AK + A I+TAHT DDQ ETV + Sbjct: 74 FPFYGERVEVGRIAKERGENLEALAREVRYAFLHRVAKEVGAKAILTAHTLDDQAETVLL 133 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + + A +G+G+ + + RP L RE +R++LL +W EDP+N D Sbjct: 134 KLLQGTA-RGLGIR--------EKEGMVVRPLLPFTREALRAYLLGLGEAWREDPTNRDL 184 Query: 198 RFER 201 +R Sbjct: 185 SLDR 188 >gi|319775667|ref|YP_004138155.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047] gi|317450258|emb|CBY86474.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047] Length = 433 Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 150/341 (43%), Gaps = 32/341 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ ++C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHALSPNADCWAQHCQNLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H + +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + + Q ++W +D SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQHQSVLFGMP--IFRPLLGFTRLQLEDYAQQEKLNWVKDESNEDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 R + L++T+ +L L E+ T+ NL D L Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340 >gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis 3_1_45B] gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis 3_1_45B] Length = 702 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVC 77 P ++VA+SGG DSM LL + +DR I + A+ V H L A + C Sbjct: 197 PVRVIVALSGGRDSMALLDVAARIAADRRQQLIAELRAVYVHHGLEREADAWEEHCRREC 256 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V + + G+ AAAR+ RY ++++A ++IMTAH DD++ET + Sbjct: 257 EKRGVIFEAVRVRVQRSGDGIEAAARDVRYRALAQYALKSGCSIIMTAHHEDDRIETFLL 316 Query: 138 RSQRDYAEKGMGLSGM----------------CDTILYDLNLWISRPFLRCRREDIRSFL 181 + R G GL G+ + +++ RP+ R DI ++ Sbjct: 317 QWMR-----GAGLEGLAAFPEVRELAAPSMEDAKAVQARKQVFLLRPWSGVLRRDIERYV 371 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 R I + +DPSN ++ R RVR Sbjct: 372 KNRRIPYVDDPSNNSPKYARNRVR 395 >gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus DSM 19965] gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus DSM 19965] Length = 466 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 16/165 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+AVSGG DS+GLL+A++ + S F ++DH LR+ + +EV YV+ +C L Sbjct: 9 ILLAVSGGPDSLGLLLAMNELKSSEGFS---IGCCTIDHHLRKESAEEVIYVNKICEELG 65 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V V + + AARE RY + E T I AH DDQ ETV Sbjct: 66 IDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAETVIH 125 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 R R GM GLSGM Y + RPFL +++I++++ Sbjct: 126 RLIRG---GGMTGLSGMLPKREYFI-----RPFLAVTKKEIQAYI 162 >gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551] gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551] Length = 458 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V +SGG DS+ LL L S+ +S I A VDH R + +K ++ YV + C +L Sbjct: 21 VVVGISGGPDSLALLHFLWSLKEQKSLTII---AAHVDHMFRGKESKQDMEYVQNYCKQL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ + + AARE RY + K A L+ H DDQ+ET+ Sbjct: 78 NIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHGDDQIETML 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G +GM Y + +I RPFL +E+I + ++ DPSN Sbjct: 138 MRMVR--GSTMNGYAGMQPKRPY-ADGFIIRPFLAVTKEEINRYCKLHGLTPRIDPSNEK 194 Query: 197 DRFERVRVRRFV 208 D + R R R +V Sbjct: 195 DSYTRNRFRHYV 206 >gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens] gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens] Length = 462 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DS+ L VL+ + F K+ AI+VDH LR + E + V+++ +L Sbjct: 19 VALAVSGGVDSISL-----CVLARQYFQKL--FAITVDHRLRAESSQEAQNVNEILDKLN 71 Query: 82 IAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I H +VS W + AR RY L+ E + N ++T H +DQ+ET R Sbjct: 72 IPHKIVSCNWNQEVNFRKVQELARLKRYRLLGEECQNQNIQYLLTGHHLNDQIETFIFRL 131 Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G+ + + L+ + + RP L ++ ++ Q + W EDPSN Sbjct: 132 SCKSGIDGLSCMKLSQNLRLHFPPITLIRPLLSFQKTQLQEVCHQNKVIWIEDPSNMSLM 191 Query: 199 FERVRVRR 206 ++R ++R+ Sbjct: 192 YKRNQIRQ 199 >gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5] gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5] Length = 472 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77 A I+V VSGG DSM LL ALH+ L RS I A VDH R +E +R+V C Sbjct: 18 ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73 Query: 78 -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L + ++ + GL AAAR+ RY E A + AH DDQ+ET Sbjct: 74 AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M+ + G GL+GM + I RPFL +E+I + + +S+ D SN Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLPITKEEILHYCRENGLSYRTDESN 190 Query: 195 TDDRFERVRVRRFV 208 D + R R R+ V Sbjct: 191 AKDDYTRNRFRKTV 204 >gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella adiacens ATCC 49175] gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella adiacens ATCC 49175] Length = 457 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 13/221 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM LL A+ + D + K V++ LR + DE + V C +I Sbjct: 22 VLAVSGGVDSMVLLNAMALLFEDHA--KDHIVVAHVNYGLRAQSMDEEQLVRRFCKSRQI 79 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + ++K +K + + R RY E K A ++ AH DDQLET+ M+ R Sbjct: 80 PFEIKNFKETKEEKASESILRNFRYEFFEEVLKKHQAHYLVVAHHQDDQLETILMKWSRG 139 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + GLSGM + I + I RPFL ++++ + + ED SN D + R Sbjct: 140 STLE--GLSGMKE-IRQVKGMTILRPFLSLNKKELYQEAETHQVPYLEDESNESDNYTRN 196 Query: 203 RVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 R R F+++ + +A FQ + +AVA L+P Sbjct: 197 RYRHHVVPFLKEENPNA----GSHFQKSAQMIADAVACLMP 233 >gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614] gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614] Length = 321 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 104/214 (48%), Gaps = 16/214 (7%) Query: 1 MFLSP-IESVRFFVR---SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 M L P I +VR VR + V P ++VA SGG+DS+ LL A +V R G + Sbjct: 1 MSLHPAIAAVRLAVRRALAHVDPGRTVVVACSGGADSLALLAA--TVFEGRRAG-WRVVG 57 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHA 114 +VDH L+ + D +V + L +V + + G AAAR+ARYA++ + A Sbjct: 58 ATVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEAAGQGPEAAARQARYAVLDQLA 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +A ++ HT DDQ ETV + R G L+GM + +D RP L R Sbjct: 118 ERFDADAVLLGHTRDDQAETVLLGLAR--GSGGRSLAGMRRS--FDR---FVRPLLDLSR 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 D + I + DP N D F RVRVRR V Sbjct: 171 ADTATACQVAGIEFWSDPHNEDPAFTRVRVRRSV 204 >gi|326794452|ref|YP_004312272.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1] gi|326545216|gb|ADZ90436.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1] Length = 431 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 94/213 (44%), Gaps = 32/213 (15%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRETAK 67 +F R I VA SGG DS LL + S L + + I+ SAI V H + E A Sbjct: 13 QFLPRENNRAVTIWVAYSGGLDSEALLHLVASELESIESLYKGIRLSAIHVHHGVSEHAD 72 Query: 68 DEVRYVSDVCSRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 V + C+ L I V S++N AAREARY + +H + + Sbjct: 73 SWVEHCKTSCAALGIPLIVEKVVIEGVASFEN---------AAREARYEVFRKHLQMND- 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRRE 175 +++ AH +DQ ETV R +R KG+G + D I+Y RP L C R Sbjct: 123 -ILLQAHHANDQAETVLFRLERGTGLKGLGGIPSSRPLADAIIY-------RPLLNCSRF 174 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 I + N+ W ED SN D + R +R V Sbjct: 175 HIEQYAYSCNLKWIEDESNQDQAYRRNFLRHSV 207 >gi|289450034|ref|YP_003475216.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184581|gb|ADC91006.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 483 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 26/202 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++VA SGG+DS+ LL LH + + K K I +H LR A +E V + L Sbjct: 32 NLVVACSGGADSLALLYVLHEI---STVVKFKLEVIHFNHGLRLEAAEEAAAVETIARSL 88 Query: 81 RIAHSVVSWKNSKPQT------------GLMA-AAREARYALISEHAKTINAT---LIMT 124 ++ ++ W T G+ A+R+ARYA + A+ I Sbjct: 89 QLPFTLGVWDRGNCATPSNSVGSNDFFDGISENASRQARYAFFKHYLAENCASERSYIAL 148 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV+ R R G G++G+ + + + RPFL+ + ++S+L+ Sbjct: 149 AHHLDDQAETVFFRLMR-----GCGINGL--QGMRNFSGRYFRPFLQTPQAKLKSYLISH 201 Query: 185 NISWCEDPSNTDDRFERVRVRR 206 NI+W ED SN+D++F R +R Sbjct: 202 NIAWSEDASNSDEKFTRNYLRH 223 >gi|262365357|gb|ACY61914.1| hypothetical protein YPD8_1229 [Yersinia pestis D182038] Length = 248 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS +L+ L L + ++ AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I VV Q G+ AAAR ARY S A +++TA DDQ ET + + Sbjct: 83 KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + + + RP L RE + ++ + + W ED SN DDRF+ Sbjct: 141 RGSGPAG--LSAMAAKMPF-AHSQLLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197 Query: 201 RVRVR 205 R +R Sbjct: 198 RNFLR 202 >gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187] gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187] Length = 476 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912] gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912] Length = 497 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 15/194 (7%) Query: 19 PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSD 75 P H +++AVSGG DSM + + L LS G + FS + VDH +R + DE R+V Sbjct: 17 PLHRVVLAVSGGVDSM-VAMDLIGQLS----GALGFSVVVCHVDHRMRPESGDEQRFVEA 71 Query: 76 VCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 R +A V+ + K AAAR RY +++ A+ A ++ AH DDQ Sbjct: 72 EAVRRGLAFQGVAVDVPGRIRKTGESPQAAARALRYEALTQCAREAGAEAVILAHHQDDQ 131 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV +R R + G+G GM + + +LW RPFL+ + ++ ++ I + ED Sbjct: 132 AETVLLRLLRGTSPAGLG--GMNEVRRWG-DLWWLRPFLKVPKAELVAYATDHGIPYRED 188 Query: 192 PSNTDDRFERVRVR 205 PSN ++ R ++R Sbjct: 189 PSNWSTKYLRNKIR 202 >gi|325473901|gb|EGC77089.1| hypothetical protein HMPREF9353_01437 [Treponema denticola F0402] Length = 454 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 22/197 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSD 75 P +L+AVSGG+DSM +L A + SD + + ++V+H +R ET D ++V + Sbjct: 23 PLRLLLAVSGGADSMAMLSAFLELKSDIN---AEIFVLTVNHNIRPEKETLGD-AQFVLN 78 Query: 76 VCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C I + V + +TG+ AAR RY + A ++NA I+TAH + Sbjct: 79 FCKNKCPCILAEIPKNTVFDEAGNRKTGIEDAARFLRYNEFEKAADSLNADYILTAHNKN 138 Query: 130 DQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ETV MR Q E MG+S + RP L R +I +L ++NI W Sbjct: 139 DNYETVLMRLFQGSEPEALMGISPRRGRFI--------RPMLNISRSEIEEYLKEKNIPW 190 Query: 189 CEDPSNTDDRFERVRVR 205 ED +N + + R +VR Sbjct: 191 REDATNLETSYLRNKVR 207 >gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26] gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26] Length = 480 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 184 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987] gi|61216566|sp|Q73FE5|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 476 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3] gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3] Length = 464 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 96/211 (45%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL H LS R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI A V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R K G +G+ + I RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ Q +S DPSN +D + R R R + Sbjct: 176 EAYCRQMGLSPRRDPSNEEDDYTRNRFRHHI 206 >gi|91788722|ref|YP_549674.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666] gi|91697947|gb|ABE44776.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666] Length = 326 Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 32/196 (16%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG+DS LL+ +++ G+++ A+ + H L+ A D R+ +C++L + Sbjct: 25 VALSGGADSTALLVGC----AEKWPGQVR--AVHIHHGLQAAADDFERHCQALCAQLNVP 78 Query: 84 HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATL----IMTAHTFDDQLETVYM 137 +V V +++ P AAR+ARYA A+ A I A DDQ+ET+ + Sbjct: 79 LAVKRVQARHA-PGESPEDAARKARYAAFGAVAREEWAQHAIKDIAIAQHADDQVETMLL 137 Query: 138 RSQRDYAEKGMGLSGMC--------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 R G GL G+ D I+Y RP L +R++L++R + W Sbjct: 138 ALSR-----GAGLPGLAAMPARWERDGIVYH------RPLLAVPGALVRAWLVERGLPWV 186 Query: 190 EDPSNTDDRFERVRVR 205 EDP+NTD+RF R R+R Sbjct: 187 EDPTNTDERFTRNRIR 202 >gi|145638685|ref|ZP_01794294.1| pyridoxine kinase [Haemophilus influenzae PittII] gi|145272280|gb|EDK12188.1| pyridoxine kinase [Haemophilus influenzae PittII] Length = 430 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 150/327 (45%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L + A ++ D+C +L Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADCWAKHCQDLCDQL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + I I N Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 308 RYQDSLYLTKRFSDLTKYCLKLEQNTL 334 >gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97] gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1] gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97] gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1] Length = 476 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 509 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 38/281 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 +LV VSGG DS+ LL L+ + + F K ++H R+ +A+++ +V + L Sbjct: 21 VLVGVSGGPDSVALLHVLYELRQELQF---KLVVSHLNHGFRDKSAEEDADFVKKLAEDL 77 Query: 81 RI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + +++ PQ G AR RY + AK AT + H DDQ+ Sbjct: 78 ELPIIYDKWQVKDYINYYKLSPQQG----ARIQRYKFFEQAAKDFGATKLALGHHIDDQV 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET ++R R + GLSGM + +L + RP L + +I+ +L + + DP Sbjct: 134 ETFFLRLIRGAGTQ--GLSGMQFIRKLNNDLLLIRPLLEVSKSEIKEYLQTNKLKYKIDP 191 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N + + R +VR + + FQD+ +N + + ++ Sbjct: 192 TNQETNYLRNKVRHEILPV-----------FQDINPNINERL---------LETMELLKE 231 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 D LN + L+ +V Y+ ER +LF Sbjct: 232 ENDYLNKAANELYQKSQVDTGRSQNNTKPLAYQGQERELLF 272 >gi|300172734|ref|YP_003771899.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811] gi|299887112|emb|CBL91080.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811] Length = 435 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 16/194 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + A ++VAVSGG DS+ LL L L D K V++ LRE + + ++V + Sbjct: 14 WEATVIVAVSGGVDSVVLLHTLRQQLPD-----AKLVVAHVNYHLREESDADEKFVHHLA 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +W N P + AR+ RY + A + T ++ AH DDQ ETV + Sbjct: 69 DKYHAIFEQTAWLNV-PDIAVEKQARDFRYQFFEQLASKYHTTTVVVAHHADDQAETVLL 127 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R + M L+GM N I RPFL ++++ S+ + N++W ED +N D Sbjct: 128 KLIR--GGQLMQLAGMSQQ-----NRRIVRPFLCITKQELVSYAQKHNLNWHEDKTNHDA 180 Query: 198 RFERVRVRRFVRDI 211 + R F+R I Sbjct: 181 MY---TPRNFLRQI 191 >gi|261344719|ref|ZP_05972363.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541] gi|282567161|gb|EFB72696.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541] Length = 453 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 16/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV SGG DS LL AL+ L F ++ AI V H L A + +++C + Sbjct: 22 ILVGFSGGIDSTVLLHALYQ-LKQSHFPSLQVRAIHVHHGLNMRADKWEMHCAELCEQWN 80 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I H V N+ G+ AAAR+ARY + + + +I+TA DDQ ET + Sbjct: 81 IPFVCHHVTVDASNN----GVEAAARDARYQAYRD--ELLQNEIIVTAQHLDDQAETFLL 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +R GLS M ++ +D N ++ RP L R+++ ++ + + W ED SN Sbjct: 135 ALKR--GSGPAGLSAMRESQPFDATRGNTYLLRPLLDISRQELERYMQEYALPWVEDDSN 192 Query: 195 TDDRFER 201 DDR++R Sbjct: 193 QDDRYDR 199 >gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803] gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803] Length = 480 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L + + + VDH Sbjct: 10 VEKVDDFVKQHDVLEERSTIVVGVSGGPDSLALLYYL---LEKKEAKRWEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + N+ DPSN + + R R+R++V Sbjct: 184 INYCNKLNVIPRIDPSNKKEVYTRNRLRKYV 214 >gi|169825696|ref|YP_001695854.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41] gi|168990184|gb|ACA37724.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41] Length = 468 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 11/193 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVC-- 77 H+L+AVSGG DSM LL H + + I+ A+ VDH LR A E R +V C Sbjct: 22 HLLIAVSGGVDSMALL---HYFVQTKEHWNIRVEAVHVDHMLRGEASAEDRAFVQKYCDD 78 Query: 78 SRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + + +S +K + R RY E NA ++TAH DDQLE+V Sbjct: 79 NGVYLHATAISIPTILAKENGNIQLICRRERYRYFKEVLYETNANKLVTAHHADDQLESV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M ++ M G+ ++ I RPFL + +I +LL++ +++ ED SN+ Sbjct: 139 LMALTKNATMNSM--QGIRPQRNFEGKTLI-RPFLTVTKTEIGEYLLRKGLNYREDASNS 195 Query: 196 DDRFERVRVRRFV 208 D + R R R V Sbjct: 196 KDTYVRNRFRHHV 208 >gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498061|sp|Q5GTD2|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, MesJ [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 431 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 12/197 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 VY + VAVSGG DS+ LL + S R A++V+H LR +++EV +V Sbjct: 16 VYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPP--IALAVNHGLRPESQEEVEFVVSY 73 Query: 77 CSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + S +++WK + + + AR+ARY L++E K + + AH DDQ ET Sbjct: 74 AKELGVKKSFILNWKRQNIKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETF 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDP 192 +R E+G GL G+ ++ Y +L + RP L R I+ + + W ED Sbjct: 134 LLR-----LERGSGLDGL-SSMDYKSSLNGVCMLRPLLSFSRSRIKKYADFYRLKWVEDR 187 Query: 193 SNTDDRFERVRVRRFVR 209 SN +++R R ++ Sbjct: 188 SNQSLKYKRTLYRNLLK 204 >gi|251792238|ref|YP_003006960.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700] gi|247533627|gb|ACS96873.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700] Length = 436 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 16/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DS LL AL + L + + AI + H L A + ++C + Sbjct: 18 TQFLIGFSGGLDSTALL-ALFAKLRENQ-PHFQLRAIHIHHGLSSNADAWATHCENLCRQ 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I ++ N G+ A AR+ARY I++H + + TAH DQ ET ++ Sbjct: 76 FQIP-LLIQRVNVNIANGIEAGARQARYEAIAQH--ILPQEWLATAHHLQDQTETFFLAL 132 Query: 140 QRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R G GL G+ + +Y N+ I RP L R+ + +F+ Q+ I+W ED SN Sbjct: 133 KR-----GSGLQGLSAMQAQSTVY--NVPIFRPLLSFSRQQLLNFVQQQGITWIEDESNA 185 Query: 196 DDRFERVRVR 205 D++++R +R Sbjct: 186 DNQYDRNFLR 195 >gi|225027805|ref|ZP_03716997.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353] gi|224954855|gb|EEG36064.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353] Length = 513 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 27/291 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 IL+ +SGG+DS+ L L+ R +K A+ ++H LR E AK + +V D C + Sbjct: 25 ILLGISGGADSVCLA---RYFLARREALSLKLYAVHINHMLRGEEAKRDEEFVQDFCHKW 81 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + + + ++ + + A R ARY ++AK + I AH +D ET+ Sbjct: 82 NLSLNVEYRNIKEESRQKKCSEEEAGRIARYECFEKYAKEYHCGKIAVAHHQNDAAETIL 141 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G G GM + +N I RPFL RE+I L ++ +D +NT+ Sbjct: 142 FRMLR-----GTGPQGMAGIL--PVNGKIIRPFLCLSREEIMDILQNIGQNYVDDSTNTN 194 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + + R +R + H +L +++ +A + P+ ++ ++IA Q Sbjct: 195 EEYSRNYIRHRILPEMEHVNQKAAAHISELGMQMQELLAYVTPQMEKLYNENVIANEQGE 254 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 L ++ + SL + M R MLF SG R +S+ V Sbjct: 255 LFLEEKTFSVM------------SLFEQKEMMRRMLFEISGHRKDISLVHV 293 >gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271] gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271] Length = 480 Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L] gi|61216463|sp|Q63HD6|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L] Length = 476 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|68249007|ref|YP_248119.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP] gi|81336582|sp|Q4QND8|TILS_HAEI8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|68057206|gb|AAX87459.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP] Length = 430 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 40/345 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ ++C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQNLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H + +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ ++L+ + I RP L R + + Q ++W D SN D Sbjct: 136 R-----GSGLQGLSAMQQQSVLFGMP--IFRPLLGFTRPQLEDYAQQEKLNWVTDESNED 188 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R++ R F+R+ L L + F DL V+ + + + + I I Sbjct: 189 NRYD----RNFLRNEILPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQI 243 Query: 257 LNIDSTLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306 N L F Y L A + Q+ +P R + +++ +F K + Sbjct: 244 KNQFKLLQFRQYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVN 303 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 VI R + L++T+ +L L E+ + NL D L Sbjct: 304 KVIRRYQDSLYLTKPFSDLTKCTLKLEQNML--------NLPDDL 340 >gi|258424455|ref|ZP_05687334.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635] gi|257845324|gb|EEV69359.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635] Length = 431 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASNEEARFLEAYCDRH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|160902337|ref|YP_001567918.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95] gi|189035968|sp|A9BJK2|TILS_PETMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|160359981|gb|ABX31595.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95] Length = 311 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL + + F + S ++HC+RE A ++ +V C +L+ Sbjct: 26 ILLGVSGGKDSMSLLHVMSKLSKTMGF---EISVAHLNHCMREEADNDEAFVRQACWKLK 82 Query: 82 IAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + K + G+ A R+ RY E + ++ I TAH DD ET+ Sbjct: 83 IPFFSKKVDVFTY-SKKNKVGVEVAGRKLRYEFFYETLRRLSYNKIATAHHMDDLFETMI 141 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G G+ G+ I + I++P L E+I++++ NI + ED N Sbjct: 142 YRILR-----GTGIYGLGGLI--PIEEEITKPMLCVDLEEIKNYVTINNIEYVEDKYNYS 194 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 195 LDYARNKIR 203 >gi|331661562|ref|ZP_08362486.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA143] gi|331061477|gb|EGI33440.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA143] Length = 432 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L C R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLACTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|281411798|ref|YP_003345877.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10] gi|281372901|gb|ADA66463.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10] Length = 431 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V +C + Sbjct: 24 HVLVAVSGGIDSMTLLYVLKKF---SPLLKIKITAAHLDHRIRESSRRDREFVERICRQW 80 Query: 81 RIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + WK+S L ARE RY + AK + AT I AH +D LET Sbjct: 81 NVPVETSEVDVPSLWKDS--GKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLET 138 Query: 135 VYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V R R G+ +S + + RPFL +R +I + ++ + + D + Sbjct: 139 VVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVVDET 190 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D ++ R F+R H + MK +L V +AV L+ +T+ +R+ + + Sbjct: 191 NYDVKY----TRNFIR----HRIVPLMK---ELNPTVEDAVYRLVS--VTLLLRNFVERT 237 Query: 254 -QDILNIDSTLLFY 266 QD ++ + FY Sbjct: 238 VQDF--VERNVYFY 249 >gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 476 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342] gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342] Length = 480 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008] gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008] Length = 332 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 14/198 (7%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++P + ILVA SGGSDSM LL L + + R + VDHC+R +KDEV ++ Sbjct: 19 IFPENCRILVACSGGSDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRPESKDEVLWLR 77 Query: 75 DVCSRLRIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + K S+ Q R+ RY +++ A++ I AH DD Sbjct: 78 TQVDVLGLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTDIAQSEGYDYIAVAHHKDD 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 Q E++ R G GL+G+ + D + + RP L +E++ +L +++IS+ Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYTVPVVRPLLDVTKEELLLYLKEKDISY 192 Query: 189 CEDPSNTDDRFERVRVRR 206 C D +N D R++R R+R Sbjct: 193 CIDSTNEDVRYQRNRIRH 210 >gi|148269484|ref|YP_001243944.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1] gi|147735028|gb|ABQ46368.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1] Length = 419 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V +C + Sbjct: 12 HVLVAVSGGIDSMTLLYVLKKF---SPLLKIKITAAHLDHRIRESSRRDREFVERICRQW 68 Query: 81 RIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + WK+S L ARE RY + AK + AT I AH +D LET Sbjct: 69 NVPVETSEVDVPSLWKDS--GKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLET 126 Query: 135 VYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V R R G+ +S + + RPFL +R +I + ++ + + D + Sbjct: 127 VVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVVDET 178 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D ++ R F+R H + MK +L V +AV L+ +T+ +R+ + + Sbjct: 179 NYDVKY----TRNFIR----HRIVPLMK---ELNPTVEDAVYRLVS--VTLLLRNFVERT 225 Query: 254 -QDILNIDSTLLFY 266 QD ++ + FY Sbjct: 226 VQDF--VERNVYFY 237 >gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260] gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260] Length = 442 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 20/190 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+A+SGG DS +AL +L R + + + +DH +R+ + + +VS++ SR Sbjct: 22 EMLIAISGGGDS----VALAGLL--RRYWRGRQVWAHLDHGIRKESSRDALFVSELASRW 75 Query: 81 RIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V + S P L A R RY + A + I AHT DDQ ET+ Sbjct: 76 GIPCVVE--RVSLPALRERGESLEMAGRRVRYGFLERTASNASLAFIALAHTADDQAETL 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + +G G+ G+ N W+ RP RRE++RSFL + ISW ED SN Sbjct: 134 LL-----HLARGTGIWGLAGMPERRGN-WV-RPLATFRREELRSFLREEGISWVEDLSNQ 186 Query: 196 DDRFERVRVR 205 D F R RVR Sbjct: 187 DRMFLRNRVR 196 >gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319] gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319] Length = 458 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V +SGG DS+ LL L S+ +S I A VDH R E ++ ++ YV + C +L Sbjct: 21 VVVGISGGPDSLALLHFLWSLKEQKSLTII---AAHVDHMFRGEESQQDMEYVQNYCKQL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ + + AARE RY + K A + H DDQ+ET+ Sbjct: 78 NIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHGDDQIETML 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G +GM Y + +I RPFL +E+I + ++ DPSN Sbjct: 138 MRMVR--GSTMNGYAGMQPKRPY-ADGFIIRPFLAVTKEEINRYCKLHGLTPRIDPSNEK 194 Query: 197 DRFERVRVRRFV 208 D + R R R +V Sbjct: 195 DSYTRNRFRHYV 206 >gi|117923751|ref|YP_864368.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1] gi|117607507|gb|ABK42962.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1] Length = 349 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 13/191 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LVAVS G DS LL L R A DH LR AK ++ +V C++ Sbjct: 28 APLLVAVSAGVDSSALLHLL------RLCYPGPLQAAHFDHALRPCAKQDLAHVQQQCAQ 81 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V W + L A AR+ARY +++ A + A I AH +DQ ET+ R Sbjct: 82 YAIPLHVGHWLPPAQKANLAAQARQARYRFLAQTAYGLKAPFIGIAHHQEDQAETLLERL 141 Query: 140 QRDYAEKGM-GLSGMCDTILYDL----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 A G+ GLSGM + + + RP L ++++ S+L I+W EDPSN Sbjct: 142 LLRGA--GLKGLSGMRPLAPLPMAEFAQVQLLRPLLPFSKKELTSWLQGEQITWREDPSN 199 Query: 195 TDDRFERVRVR 205 D R+ R +R Sbjct: 200 QDLRYTRNHIR 210 >gi|197334782|ref|YP_002156773.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11] gi|197316272|gb|ACH65719.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11] Length = 456 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 11/197 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V H++VA+SGG DSM LL ++ +++ A+ V+H L + A D + Sbjct: 29 VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSKHASDWEVSCASY 85 Query: 77 CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C L I + V+ K S PQ L AR+ARY ++ +H + +L++T DDQ+ET Sbjct: 86 CEELDIPLYIERVNLKVS-PQESLEEVARKARYHVLEKHMRA--NSLLLTGQHQDDQVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ +R GLS M I + RP L R+ I + Q ++W ED SN Sbjct: 143 FFLALKR--GSGPAGLSSMPSIIPLKTG-YKCRPLLFTSRQHITEYAQQHQLTWVEDESN 199 Query: 195 TDDRFERVRVRRFVRDI 211 D RF+R +R + + Sbjct: 200 QDTRFDRNFLRHEITPV 216 >gi|331092502|ref|ZP_08341324.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400723|gb|EGG80326.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium 2_1_46FAA] Length = 470 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG+DS+ LL L + F I + V+H LR E A+ + +YV ++C + Sbjct: 21 VVVGVSGGADSVCLLFVLMELQKTIGFDII---VVHVNHLLRGEDAESDEKYVRELCEKY 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V V W + L A R R + K T I AH +D ET+ Sbjct: 78 HLTCEVYRENVEWIAKNKRESLEEAGRNVRREAFEQTLKKYGGTKIALAHHRNDNAETLL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G GL+G+ N RP L R++I +LL+R I++C D +N Sbjct: 138 MNLAR-----GSGLAGLGGMRPVKENRI--RPLLCLERKEIEEYLLKRQIAYCTDETNYS 190 Query: 197 DRFERVRVRRFV 208 D + R RVR V Sbjct: 191 DAYTRNRVRNHV 202 >gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293] gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293] gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 480 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|153872260|ref|ZP_02001203.1| cell cycle protein MesJ [Beggiatoa sp. PS] gi|152071275|gb|EDN68798.1| cell cycle protein MesJ [Beggiatoa sp. PS] Length = 435 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 18 YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 YPA VA SGG DS LL AL + + ++ +++ AI + H L A + Sbjct: 28 YPATQCFWVAYSGGLDSRVLLHALAQLRHNNTYFQLR--AIHIHHGLHPKADQWATHCQQ 85 Query: 76 VCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 VC L IA V+ K + P+ L A AR ARY I++ ++ TA DDQ ET Sbjct: 86 VCEALTIACEVIRVKVGTGPRESLEANARTARYDAIAQ--VIAPDDVVFTAQHADDQAET 143 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 V ++ R G G++G+ + W+ RP L R + + L+ +I W ED Sbjct: 144 VLLQLLR-----GAGVAGLAAMPQVSRLAQGWLVRPLLGYTRTQLHDYALKAHIHWIEDS 198 Query: 193 SNTDDRFERVRVRR 206 SN+D RF R +R Sbjct: 199 SNSDTRFARNFLRH 212 >gi|222056506|ref|YP_002538868.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32] gi|221565795|gb|ACM21767.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32] Length = 459 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 100/207 (48%), Gaps = 22/207 (10%) Query: 9 VRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 V ++R+ L+ P ++VAVSGG+DS+ LL VL+ K++ ++HCLR Sbjct: 5 VNSYIRAHRLISPGDTVIVAVSGGADSVALL----DVLAGLRSSKLRLIVAHLNHCLRGS 60 Query: 64 ETAKDE--VRYVSD---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E+ DE VR ++ VC + + + SK L A R ARY + E A N Sbjct: 61 ESDADEAFVRKLAGGYGVCFVTKAVDVLALSRESK--MSLEEAGRVARYRFLKELAINCN 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A + AH DDQ ETV MR R G GL M T I RP L R +I Sbjct: 119 ARSVAVAHHADDQAETVLMRLIR--GAGGSGLRAMTSTTAG----LIIRPLLSVTRREIE 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 S+L ++ + + D SN D F R R+R Sbjct: 173 SYLDKKGLGYRTDSSNADLNFLRNRIR 199 >gi|170288158|ref|YP_001738396.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2] gi|226695551|sp|B1L8R5|TILS_THESQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|170175661|gb|ACB08713.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2] Length = 414 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 26/195 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77 H+LVAVSGG DSM LL L R F KIK +A +DH +RE+++ + +V +C Sbjct: 7 HVLVAVSGGIDSMTLLYVL------RKFSPLLKIKITAAHLDHRIRESSRRDREFVERIC 60 Query: 78 SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I WK+S L ARE RY + AK + A+ I AH +D Sbjct: 61 RQWNIPVETSEVDVPSLWKDS--GKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118 Query: 132 LETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LETV R R G+ +S + + RPFL +R +I + ++ + + Sbjct: 119 LETVVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVV 170 Query: 191 DPSNTDDRFERVRVR 205 D +N D ++ R +R Sbjct: 171 DETNYDVKYTRNFIR 185 >gi|332994188|gb|AEF04243.1| cell cycle protein MesJ [Alteromonas sp. SN2] Length = 437 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 10/192 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++VA SGG DS LL ALH R A+ + H L A +R+ C Sbjct: 24 PPLLVVAYSGGVDSSLLLHALHVF---RKQTSTPVHAVHIHHGLSNNADTWLRHCQSECD 80 Query: 79 RLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +L I H V+ N ++ L A AR+ARY ++ E T N L++ H +DQLETV Sbjct: 81 KLSIPLTHYHVAVDNGARKS-LEAEARDARYKVLHEFCHTHNGVLLLGQHA-EDQLETVL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ +R +G LSGM + L + RP L ++ DI + ++ W D SN D Sbjct: 139 LQLKRGAGPQG--LSGMGAQQWRNGVLTL-RPMLALQKSDIVDAANRLDLQWVNDESNAD 195 Query: 197 DRFERVRVRRFV 208 DR++R +R + Sbjct: 196 DRYDRNFLRNQI 207 >gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62] gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62] Length = 422 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 14/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGGSDS LL+A V +S G + A++VDH R AK E VS++ + L Sbjct: 32 VGVAVSGGSDSTALLLAC--VEWAKSNG-VAVHAVTVDHGQRVEAKQEAIAVSELTAELG 88 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + HS+++ + + A AR+ARYA +++ A+ ++ HT DD ET MR R Sbjct: 89 VEHSILTLETLEAGANFQARARDARYAAMAQWAQARRLAVVAVGHTADDVAETFLMRLAR 148 Query: 142 DYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G+ G+ + ++++ W+ RP L +R+ +R FL + I W +DPSN Sbjct: 149 -----GAGVDGLAQMVGSWTAHEMS-WV-RPLLGFKRQALRDFLTAQRIVWSDDPSNQSI 201 Query: 198 RFERVRVRRFV 208 ++ R R + Sbjct: 202 KYTRTAAREVL 212 >gi|317493166|ref|ZP_07951589.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918826|gb|EFV40162.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 439 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 6/182 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + ++VA SGG DS LL AL + L ++F ++ A+ V H L A V + VC + Sbjct: 18 SQLMVAFSGGLDSTVLLHAL-AQLRMQNFPHLQLRAVHVHHGLSRYADLWVDHCESVCRQ 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V+ K ++G+ AAAR+ARY I++ + + ++TA DDQ ET + Sbjct: 77 WQVPLKVLRVKVDSQRSGVEAAARDARYHAIAD--EISHHETLLTAQHLDDQCETFLLAL 134 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GLS M + + + RP L R + + ++ W ED SN DDRF Sbjct: 135 KR--GSGPTGLSAMASHMPF-FSTEQLRPLLDISRAQLEEYAANYDLKWVEDDSNQDDRF 191 Query: 200 ER 201 +R Sbjct: 192 DR 193 >gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str. F0412] gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str. F0412] Length = 332 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 14/197 (7%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++P H IL+A SGG DSM LL L + + R K K VDH +R +KDEV ++ Sbjct: 19 LFPEHSRILIACSGGPDSMALLHLLQDIAAHR-HTKYKLGIAIVDHSIRPESKDEVLWLR 77 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLM----AAAREARYALISEHAKTINATLIMTAHTFDD 130 + L ++ ++ L R RY ++E A++ I AH DD Sbjct: 78 NQVDALGLSFYTTTFDVPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVAHHKDD 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 Q E++ R G GL+G+ + D ++ + RP L + ++ ++L R +++ Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYDIPVIRPLLDVTKAELLAYLADRKLTY 192 Query: 189 CEDPSNTDDRFERVRVR 205 C D +N D R++R R+R Sbjct: 193 CIDSTNDDIRYQRNRIR 209 >gi|168245005|ref|ZP_02669937.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447470|ref|YP_002044226.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254789044|sp|B4TK64|TILS_SALHS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194405774|gb|ACF65993.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336227|gb|EDZ22991.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 430 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G C L L RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255 R F+R L AL L +++ V + + L+ + L + I ++ Sbjct: 188 ---RNFLR---LRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240 Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 L + +L +R +A + +P ++ER+ + + C+ G Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHE 300 Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332 I R ++ WI T +++P Sbjct: 301 IRRYQSQLWWIKTVAGQHETTVVWP 325 >gi|282915827|ref|ZP_06323595.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus D139] gi|283768944|ref|ZP_06341853.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus H19] gi|282320318|gb|EFB50660.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus D139] gi|283461125|gb|EFC08211.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus H19] Length = 431 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKDYQ----IYRPLLAVSKKEIKQFQERNHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 344 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 12/188 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +L SGG DS L++A+H + + +K A +DH LR A +++ V D CS Sbjct: 37 VLAGFSGGPDSAALVLAMHYLAPSLN---MKLEAAYLDHGLRREAGEDLALVQDTCSQLS 93 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +L + S VS + + G+ AR RY + A+ A ++T H +D E + M Sbjct: 94 MKLHLGRSNVSRLAGRGRGGIEETARRLRYRYLHGVARKTGADYVLTGHHLNDLAEDILM 153 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R QR G G G+ Y I RP L R+ I FL + D +N D Sbjct: 154 RLQR-----GTGWPGLSGMRAYVPERRILRPLLMIPRKCIMDFLETAGQGYVLDATNKDK 208 Query: 198 RFERVRVR 205 F R RVR Sbjct: 209 TFLRNRVR 216 >gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella grylli] gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella grylli] Length = 458 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 12/204 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F ++ A +A SGG DS LL AL +L + AI ++H L + Sbjct: 5 EKLAFLLKQYPVSACFWIAYSGGLDSHVLLYALSQLLPTE-----RLRAIHINHGLHIHS 59 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMT 124 + C +L I +V+ + +P+TG L A+ REARY I + K ++T Sbjct: 60 DKWAKICRHACEKLTIDCEIVT-LDIRPKTGESLEASLREARYHAIEK--KIPAGNFLLT 116 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH +DQ ET ++ R KG+ C + N+++ RP L R+++ ++ Sbjct: 117 AHHRNDQAETFLLQLFRGAGLKGLISMPFCRPLTN--NVYLMRPLLNFTRQELYAYAQTH 174 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +++W ED SN + RF R +R V Sbjct: 175 HLTWIEDDSNKNQRFSRNFIRHQV 198 >gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61] gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52] gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61] gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52] Length = 464 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL H LS R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI A V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R K G +G+ + I RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ Q +S DPSN D + R R R + Sbjct: 176 EAYCRQMGLSPRRDPSNEKDDYTRNRFRHHI 206 >gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032] gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032] Length = 467 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 12/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DSM LL L+ R G + A VDH R E + ++ +V C Sbjct: 20 VIVGVSGGPDSMLLL----HELNKRRKGSFQLIAAHVDHMFRGEESFVDLAFVEAYCKEQ 75 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I A V+ + AAARE RYA + + A I AH DDQ+ET+ Sbjct: 76 GIPFESARIQVTQYAKENHLNKQAAARECRYAFFRQLMERYKAQFIALAHHGDDQVETMM 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G+GL+G+ Y + W+ RP + ++D+ + Q +I + D SN Sbjct: 136 MRLARGTV--GIGLAGIQAKRPYQ-DGWLIRPLIGYSKDDVLTACEQAHIPYVIDQSNHT 192 Query: 197 DRFERVRVRRFV 208 D + R R+RR + Sbjct: 193 DDYLRNRIRRHI 204 >gi|118594638|ref|ZP_01551985.1| hypothetical protein MB2181_03180 [Methylophilales bacterium HTCC2181] gi|118440416|gb|EAV47043.1| hypothetical protein MB2181_03180 [Methylophilales bacterium HTCC2181] Length = 446 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DSM L+ AL+ + + K+ A + H L A + + + C +L Sbjct: 29 IDIALSGGCDSMVLMYALNQLKDEL---KLSIKAHYIHHGLSAYADEWLAFCEAACRKLN 85 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I S+ N+ P G+ AAR+ RY +++ ++ +I TAH +DQ ET+ ++ Sbjct: 86 IPFDSMRVDTNTLPSLGIEGAARKLRYEALAQ----LSVGVIATAHHENDQAETLLLQLI 141 Query: 141 RDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G GL G+ YD NLW RP LR +R+ I F I + ED SN D R Sbjct: 142 R-----GAGLKGLAAMPEYDKEKNLW--RPLLRVQRQVIEDFADIYEIVFIEDDSNEDTR 194 Query: 199 FERVRVRRFV 208 F+R +R+ + Sbjct: 195 FDRNFLRKNI 204 >gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens] Length = 569 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 27/207 (13%) Query: 24 VAVSGGSDSMGL-LIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEV----RYVSDV 76 +AVSGG DSM L L+A R G + + I VDH LR + E R+V D+ Sbjct: 2 IAVSGGPDSMALCLVAKEWWKGFRESGVFAERPTGIVVDHGLRPESAAEALQVQRWVLDL 61 Query: 77 ---CSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L+ W N +P +G L AAR ARY+L+ + ++T H DDQ Sbjct: 62 GFECHVLK-----CDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQA 116 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY---------DLNLWISRPFLRCRREDIRSFLLQ 183 E MR R +GL+GM + L + RP L+ ++D+ + + Sbjct: 117 ELFMMRLARSSGI--IGLAGMASRSYFFSRRPVSQDQTGLLLVRPLLQFSKQDLYTVCKK 174 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRD 210 W EDP+N + +F R R+R+ + D Sbjct: 175 AGQEWIEDPTNFNHKFARNRIRQVLAD 201 >gi|237807600|ref|YP_002892040.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187] gi|237499861|gb|ACQ92454.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187] Length = 441 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 12/204 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 SV + L+ P H+LV SGG DS LL L +S R A+ V H L A Sbjct: 4 SVFSVLDQLIRPGHLLVGFSGGLDSRVLLELLARYISQRD--GFSLQAVHVHHGLNPKAD 61 Query: 68 DEVRYVSDVCSRLR---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + VC L IA V K K + L AR+ARY + ++ +++T Sbjct: 62 QWLTHCAQVCDVLTVPFIAKRVEIEK--KARQSLEDLARQARYDVFRQNLP--EGGVLLT 117 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQLET+ + +R +G LS M + + RP L R+ + + + + Sbjct: 118 AHHQDDQLETLLLALKRGSGPRG--LSAMPVKTAFAGGHLV-RPLLTFSRQQLSDWAISQ 174 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +SW ED SN DDRF+R +R+ V Sbjct: 175 QLSWIEDDSNQDDRFDRNFLRQKV 198 >gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3] gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3] Length = 480 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 10 VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RYA + K Sbjct: 67 RGDESHEDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214 >gi|218885398|ref|YP_002434719.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756352|gb|ACL07251.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 433 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +++ VSGG+DS+ LL+ L + G ++ A +DH LR + DE R V+ +C RL Sbjct: 81 LVIGVSGGADSLCLLLVLRWLAP--RLG-LRLHAAVLDHGLRPESADEARAVAALCRRLG 137 Query: 81 ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R+ + VS ++ GL A R ARYA + A TAH DD E V + Sbjct: 138 VPCRVQRADVSDLAARECCGLEDAGRRARYAFFEAERQRTGADWTCTAHQADDLCEDVLL 197 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G G+ D I RP L R DI +FL + DPSN D Sbjct: 198 RLVR-----GTGWPGLGGMAAMDPARRILRPLLTTERRDIDAFLADLGVQPVRDPSNADP 252 Query: 198 RFERVRVRRFV 208 + R R+R V Sbjct: 253 AYRRNRLRHQV 263 >gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055] Length = 476 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V +C L + + S+ Q G+ A AARE RYA + K Sbjct: 63 RGDESHEDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + I DPSN + + R R+R++V Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H] gi|61216387|sp|Q5FQB6|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H] Length = 398 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 25/327 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + +AVSGG+DSM L + L+ R + A VDH LR + E + + Sbjct: 14 APVGLAVSGGADSMAL-----AFLARRW--RRNVVAFVVDHALRPESAAEAQLTVHRLAG 66 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + +++ P+ + AR AR+ + + ++ AH DQ ETV+MR Sbjct: 67 MNVKARLLT-LAPFPKGRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQDETVWMRH 125 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +A +GLSG+ + + + RP L +R L N+ W EDPSN + RF Sbjct: 126 L--HASGPLGLSGI-QPVSVRGRIRLVRPLLTFPTARLRLTLQAENLPWIEDPSNANRRF 182 Query: 200 ERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 ERVR+R+ + A L+ Q+ R+++ +A + ++ + + + + Q+ Sbjct: 183 ERVRLRQDLTPEQRQEARVLQQDALQE-RLRLEAELAEELGRHAVWYSQGWVFLGQE--G 239 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV-VIDRRANFLW 317 +D L L+R+ +S YR + L + G +S +V R N + Sbjct: 240 VDEEALSVLIRL--------VSGSAYRPAREAVRTLMTQGYGTLSGVQVRPAGRFGNGII 291 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQF 344 + R R L + + VWDGR++ Sbjct: 292 LVREERALGPFV-PAKAGAVWDGRWRL 317 >gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911] gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911] Length = 462 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 84/192 (43%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LV VSGG DS+ LL H + R + +AI DH R E + E R+V C Sbjct: 22 VLVGVSGGPDSLALL---HLLWKKRKVWGAEPAAIHFDHMFRGEESYQEARFVQSFCEER 78 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VS + AARE RY E K A+ + H DDQ+ET+ Sbjct: 79 NIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASGASYLALGHHGDDQMETIL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G SG+ + + I RPFL R +I + L + DPSN Sbjct: 139 MRLTR--GSTGEARSGIPFSRPFGGGEII-RPFLCLERGEIEEYCLSNELDPRRDPSNEK 195 Query: 197 DRFERVRVRRFV 208 D + R R RR V Sbjct: 196 DVYSRNRFRRNV 207 >gi|254514885|ref|ZP_05126946.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3] gi|219677128|gb|EED33493.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3] Length = 413 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + VA SGG DS LL AL + SF + +A+ +H L + A+ R+ +++C + Sbjct: 8 AGVYVAYSGGLDSTVLLHALAT-----SFSGL-VTALHANHGLHDDAELWARHCAELCDQ 61 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++ + + G+ AAAR ARY E +A L+M AH DDQ ET+ +R Sbjct: 62 WKVSFRSTRLQLNDTGDGVEAAARSARYHWF-ETCVEADAVLLM-AHHQDDQAETLLLRL 119 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+G + + L RP L R D+ + Q +SW +DPSNTD RF Sbjct: 120 LRGAGPQGLGSIPTTRALGHGSLL---RPLLDIPRSDLAGYAAQHKLSWIDDPSNTDTRF 176 Query: 200 ERVRVRRFV 208 +R +R+ V Sbjct: 177 DRNYLRQEV 185 >gi|29654800|ref|NP_820492.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 493] gi|154706200|ref|YP_001423893.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111] gi|164686109|ref|ZP_01946931.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177'] gi|165919314|ref|ZP_02219400.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334] gi|212219227|ref|YP_002306014.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154] gi|61216625|sp|Q83BJ9|TILS_COXBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29542068|gb|AAO91006.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii RSA 493] gi|154355486|gb|ABS76948.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111] gi|164601674|gb|EAX32419.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177'] gi|165916974|gb|EDR35578.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334] gi|212013489|gb|ACJ20869.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154] Length = 449 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 9/203 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F+ +L ++ +A SGG DS L+ A+ + + + + A+ ++H L A Sbjct: 15 EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKA 71 Query: 67 KDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + +C+RL+I S + +P + A AR+ARYA I + A + N TL +TA Sbjct: 72 NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET ++ R KG LS M + RP L R+D++ + + N Sbjct: 130 HTENDQAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKNN 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + W ED +N + RF R +R V Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEV 209 >gi|152978797|ref|YP_001344426.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z] gi|226695533|sp|A6VNE4|TILS_ACTSZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|150840520|gb|ABR74491.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z] Length = 427 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG+DS LL +R ++ AI + H L A D + +C +L + Sbjct: 17 LIAFSGGADSTALLALFAKSRQNRP--HLQLRAIHIHHGLNVAANDWAAHCRRICEKLEV 74 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ ++G+ AREARYA I H ++ TAH DQ ET + +R Sbjct: 75 P-LIIERVEINKKSGIEQGAREARYAAIRCHRHA--DEIVATAHHLQDQTETFLLALKRG 131 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G + ++ LY + I RP L + ++ ++L +++ W ED SN D+R++R Sbjct: 132 SGIKGLG-AMQRESRLYGMP--IFRPLLPFGKTELENYLRAQSLDWIEDDSNADNRYDR 187 >gi|15643345|ref|NP_228389.1| hypothetical protein TM0579 [Thermotoga maritima MSB8] gi|8928511|sp|Q9WZ48|TILS_THEMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4981097|gb|AAD35664.1|AE001733_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 414 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 26/195 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77 H+LVAVSGG DSM LL L R F KIK +A +DH +RE+++ + +V +C Sbjct: 7 HVLVAVSGGIDSMTLLYVL------RKFSPLLKIKITAAHLDHRIRESSRRDREFVERIC 60 Query: 78 SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I WK+S L ARE RY + AK + A+ I AH +D Sbjct: 61 RQWNIPVETSEVDVPSLWKDS--GKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118 Query: 132 LETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LETV R R G+ +S + + RPFL +R +I + + N+ + Sbjct: 119 LETVVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYARKNNVPYVV 170 Query: 191 DPSNTDDRFERVRVR 205 D +N + ++ R +R Sbjct: 171 DETNYNVKYTRNFIR 185 >gi|329731094|gb|EGG67466.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21193] Length = 431 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IHRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|319898074|ref|YP_004136271.1| tRNA(ile)-lysidine synthetase [Haemophilus influenzae F3031] gi|317433580|emb|CBY81964.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3031] Length = 430 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H + +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + + I RP L R + + + ++W D SN D+RF+ Sbjct: 136 RGSGLQGLGAIQQQSELF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNKILPKLRERWAYF-DLSVQRSTQHCFEQQQLINDLLSEAFAEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + VI Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 308 RYQDCLYLTKRFSDLTKCTLKLEQNTL 334 >gi|212212130|ref|YP_002303066.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212] gi|212010540|gb|ACJ17921.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212] Length = 449 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 9/198 (4%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ +L ++ +A SGG DS L+ A+ + + + + A+ ++H L A D Sbjct: 20 FITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKANDWEN 76 Query: 72 YVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +C+RL+I S + +P + A AR+ARYA I + A + N TL +TAHT +D Sbjct: 77 HCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTAHTEND 134 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET ++ R KG LS M + RP L R+D++ + + N+ W E Sbjct: 135 QAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKNNLRWVE 191 Query: 191 DPSNTDDRFERVRVRRFV 208 D +N + RF R +R V Sbjct: 192 DDTNLELRFNRNYLRHEV 209 >gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44] gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44] Length = 480 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG DS+ LL L L R K+K VDH R + + +++++V ++C + Sbjct: 29 IVVGVSGGPDSLALLYYL---LEKRKEAKLKIVVAHVDHMFRGDESYEDLQFVENLCREI 85 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + S+ Q G+ A AARE RYA + K A+ + H DDQ+ET+ Sbjct: 86 GVICETIRINVSQYQQQYGMNAQMAARECRYAFLERIMKKYEASYVALGHHGDDQVETIL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K G +G+ + I RP L +++I ++ + I+ DPSN Sbjct: 146 MRLVRGSTSK--GYAGIAAKRPFHSGYLI-RPLLAVTKKEINAYCKRIGITPRIDPSNEK 202 Query: 197 DRFERVRVRRFV 208 + + R R+R+ V Sbjct: 203 EVYTRNRLRKHV 214 >gi|298693839|gb|ADI97061.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 431 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|145630423|ref|ZP_01786204.1| pyridoxine kinase [Haemophilus influenzae R3021] gi|144984158|gb|EDJ91595.1| pyridoxine kinase [Haemophilus influenzae R3021] Length = 430 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 24/327 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ D+C +L Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLQPLSIRAIHIHHGLSPNADSWAKHCQDLCDQL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ + Sbjct: 79 QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + I RP L R + ++ + ++W D SN D+R++ Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R F+R+ L L + F DL V+ + + + + A I N Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247 Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 F Y L A + Q+ +P R + +++ +F K + +I Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKIIR 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 308 RYQDRLYLTKPFSDLTKYCLKLEQNTL 334 >gi|284023518|ref|ZP_06377916.1| hypothetical protein Saura13_02954 [Staphylococcus aureus subsp. aureus 132] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|262052536|ref|ZP_06024733.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3] gi|282925584|ref|ZP_06333237.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765] gi|259159583|gb|EEW44630.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3] gi|282592488|gb|EFB97500.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|253735244|ref|ZP_04869409.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus TCH130] gi|253726804|gb|EES95533.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus TCH130] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDNYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|253730977|ref|ZP_04865142.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725289|gb|EES94018.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|49482736|ref|YP_039960.1| hypothetical protein SAR0510 [Staphylococcus aureus subsp. aureus MRSA252] gi|257424621|ref|ZP_05601049.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427287|ref|ZP_05603688.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429924|ref|ZP_05606310.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 68-397] gi|257432626|ref|ZP_05608988.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus E1410] gi|257435530|ref|ZP_05611580.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M876] gi|282903095|ref|ZP_06310987.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus C160] gi|282904884|ref|ZP_06312744.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus Btn1260] gi|282907831|ref|ZP_06315669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910147|ref|ZP_06317953.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WBG10049] gi|282913337|ref|ZP_06321128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M899] gi|282918290|ref|ZP_06326030.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427] gi|282923041|ref|ZP_06330727.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101] gi|283957299|ref|ZP_06374757.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus A017934/97] gi|293500386|ref|ZP_06666238.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 58-424] gi|293509325|ref|ZP_06668041.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809] gi|293515913|ref|ZP_06670603.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M1015] gi|295427043|ref|ZP_06819680.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591580|ref|ZP_06950217.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus MN8] gi|61217256|sp|Q6GJG2|TILS_STAAR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49240865|emb|CAG39532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272648|gb|EEV04768.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275938|gb|EEV07406.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279440|gb|EEV10035.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 68-397] gi|257282491|gb|EEV12624.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus E1410] gi|257285167|gb|EEV15284.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M876] gi|282314560|gb|EFB44947.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101] gi|282317856|gb|EFB48225.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427] gi|282322808|gb|EFB53128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M899] gi|282325995|gb|EFB56301.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WBG10049] gi|282328307|gb|EFB58582.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332001|gb|EFB61510.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus Btn1260] gi|282596521|gb|EFC01481.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus C160] gi|283791223|gb|EFC30033.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus A017934/97] gi|290921321|gb|EFD98379.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M1015] gi|291096346|gb|EFE26606.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 58-424] gi|291467870|gb|EFF10380.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809] gi|295129046|gb|EFG58675.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575449|gb|EFH94166.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus MN8] gi|312436401|gb|ADQ75472.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH60] gi|315193871|gb|EFU24265.1| hypothetical protein CGSSa00_12597 [Staphylococcus aureus subsp. aureus CGS00] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRNGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|57651385|ref|YP_185441.1| hypothetical protein SACOL0553 [Staphylococcus aureus subsp. aureus COL] gi|87161906|ref|YP_493196.1| hypothetical protein SAUSA300_0487 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194269|ref|YP_499061.1| hypothetical protein SAOUHSC_00484 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220683|ref|YP_001331505.1| hypothetical protein NWMN_0471 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508749|ref|YP_001574408.1| hypothetical protein USA300HOU_0503 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142299|ref|ZP_03566792.1| hypothetical protein SauraJ_11802 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452810|ref|ZP_05700805.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948] gi|262049994|ref|ZP_06022853.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30] gi|294850369|ref|ZP_06791102.1| cell cycle protein MesJ [Staphylococcus aureus A9754] gi|304380527|ref|ZP_07363203.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61216391|sp|Q5HIG6|TILS_STAAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|57285571|gb|AAW37665.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus COL] gi|87127880|gb|ABD22394.1| MesJ/Ycf62 family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201827|gb|ABD29637.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373483|dbj|BAF66743.1| isoleusyl-tRNA-2-lysl-cytidine synthase [Staphylococcus aureus subsp. aureus str. Newman] gi|160367558|gb|ABX28529.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859496|gb|EEV82349.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948] gi|259161929|gb|EEW46512.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30] gi|269940080|emb|CBI48456.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus TW20] gi|294822793|gb|EFG39229.1| cell cycle protein MesJ [Staphylococcus aureus A9754] gi|302750400|gb|ADL64577.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340931|gb|EFM06855.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196192|gb|EFU26548.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus CGS01] gi|320139404|gb|EFW31282.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144181|gb|EFW35949.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313228|gb|AEB87641.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus T0131] gi|329729763|gb|EGG66160.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21189] Length = 431 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|161830915|ref|YP_001597351.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331] gi|161762782|gb|ABX78424.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331] Length = 449 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 9/203 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F+ +L ++ +A SGG DS L+ A+ + + + + A+ ++H L A Sbjct: 15 EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKA 71 Query: 67 KDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + +C+RL+I S + +P + A AR+ARYA I + A + N TL +TA Sbjct: 72 NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET ++ R KG LS M + RP L R+D++ + + N Sbjct: 130 HTENDQAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKSN 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + W ED +N + RF R +R V Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEV 209 >gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII 345-E] gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII 345-E] Length = 484 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 16/165 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+AVSGG DS+GLL+A++ + F ++DH LR+ + +EV YV+ +C L Sbjct: 27 ILLAVSGGPDSLGLLLAMNELKRSEGFS---IGCCTIDHHLRKESAEEVIYVNKICEELG 83 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V V + + AARE RY + E T I AH DDQ ETV Sbjct: 84 IDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAETVIH 143 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 R R GM GLSGM Y + RPFL +++I++++ Sbjct: 144 RLIRG---GGMTGLSGMLPKREYFI-----RPFLAVTKKEIQAYI 180 >gi|227357232|ref|ZP_03841589.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906] gi|227162495|gb|EEI47484.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906] Length = 441 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 13/223 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + HILV SGG DS LL L L D+ ++ +AI V H L A D + + Sbjct: 14 RQIGSHTHILVGFSGGVDSTVLLHGL-VCLRDKYQLPLELTAIYVHHGLNSKADDWLTHC 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +++ + + + G+ AREARY ++ + N L+ H DDQ E Sbjct: 73 EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQP-NQVLVTAQHQ-DDQAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + ++ ++ RP L RE I ++ + + W ED S Sbjct: 131 TFLLALKR--GSGPAGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N DDR++ R F+R LH + L +++ V + A+ Sbjct: 188 NQDDRYD----RNFLR---LHVMPLLTQRWPHFSQAVTRSAAL 223 >gi|322515650|ref|ZP_08068628.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976] gi|322118301|gb|EFX90584.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976] Length = 419 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 28/366 (7%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 A+ + H L A + VC RL+I + + + G+ A AR ARY I E Sbjct: 46 AVHIHHGLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARTARYQAIGE-- 102 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +++TAH DDQ ET + +R KG LS M + + N I RP L + Sbjct: 103 IILPNEVLVTAHHLDDQAETFLLALKRGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSK 159 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 I + LQ+ ++W ED SN D +E R F+R+ L + + + F + + Sbjct: 160 TQIEQYALQQQLTWIEDESNHDSHYE----RNFLRNEVLPIMNQRWQHFSQMVARSAQHC 215 Query: 235 A---MLIPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYR 285 A ML+ + LT ++ S+ LNI F L+R+ CG Q +P Sbjct: 216 AEQQMLLEELLTQELQRYADFSEKRLNIKDFPQFSVAKQQQLIRLWLEKCGTQ--MPSTV 273 Query: 286 SMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWD 339 + +V M++ K + + + R + L++T + L L+ + T+ D Sbjct: 274 RLIQVIQQMIYTNVDKNPQIKLADFWLRRYQHHLYLTGELLELDDFCQLLFAQQSLTLPD 333 Query: 340 GRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMT 398 G + Q+L DS+I + +P + Q L+ + GKP+ + Sbjct: 334 GIGELQHLGDSIIYKKSGKINRLLLPEALVDASLQVKLAHQGKVAQYGKPMREEMKKLYQ 393 Query: 399 KFDLPV 404 + +PV Sbjct: 394 QAQVPV 399 >gi|85707586|ref|ZP_01038652.1| ATPase [Erythrobacter sp. NAP1] gi|85689120|gb|EAQ29123.1| ATPase [Erythrobacter sp. NAP1] Length = 292 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 11/164 (6%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 + +S+DH +R A EV +V +C L + S K + L A AREARYA + + Sbjct: 12 IAVMSIDHGIRPEAAREVAFVETICQSLDV--PFTSAKVTLGAGNLQAKAREARYAALVQ 69 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRP 168 A + TAH DDQ ET+ MR R G GL G+ T L ++ + RP Sbjct: 70 WAAQQKIGHVATAHHIDDQAETLLMRLAR-----GSGLPGLAGVREWTHLPGSDVPLIRP 124 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 L R+ ++ + + I+ DPSN + F+RVRVR+ + + D Sbjct: 125 LLGFRKAELEAVVASAGITPVSDPSNENPAFDRVRVRQHLAEHD 168 >gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273] gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273] Length = 480 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 25/240 (10%) Query: 11 FFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67 F R V H I+V VSGG DS+ LL L L R+ +++ VDH R + Sbjct: 16 FVKRHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMFRGNESH 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIM 123 +++++V +C L + + S+ Q G+ A AARE RYA + K +A + Sbjct: 73 EDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 132 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I + + Sbjct: 133 LGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEIVDYCNK 189 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVNNAVAML 237 + DPSN + + R R+R++V YLK +KFQ V++ A L Sbjct: 190 LKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQEDEAYL 243 >gi|283469801|emb|CAQ49012.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus ST398] Length = 431 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIIYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|253999456|ref|YP_003051519.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4] gi|253986135|gb|ACT50992.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4] Length = 456 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + ++ F+ H+LVA+SGG DS LL L ++ ++ I+ S + V H L A Sbjct: 20 QHLQQFITQHHIEGHLLVALSGGLDSCVLLHLLATLPNNPG---IRLSVMHVHHGLSPHA 76 Query: 67 KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +C+ L++ H V + + GL AAAR RY E + +A + Sbjct: 77 DQWAEHCQRLCASHAIPLQVVHVQVPRDSGQ---GLEAAARHLRY----EAMRAAHADYV 129 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH DDQ ETV ++ R G G+ G+ YD + RP L R + + Sbjct: 130 VLAHHQDDQAETVMLQLLR-----GAGMRGLAAMASYDAQQGLLRPLLDISRAQLAEYAA 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 Q + W ED SN D ++R R+ V Sbjct: 185 QHQLEWVEDESNHDTHYDRNFCRQQV 210 >gi|154684586|ref|YP_001419747.1| YacA [Bacillus amyloliquefaciens FZB42] gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42] Length = 472 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 6 IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61 ++SV F ++ A I+ VSGG DSM LL L ++ FG A VDH Sbjct: 1 MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGHSSVIIAAHVDHQ 55 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116 R +++++++V C I V S K + AAAR+ RY + Sbjct: 56 FRGPESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFEDLMTK 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A + AH DDQ+ET+ MR + G GL+GM + + W+ RPFL +++ Sbjct: 116 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREF-ASGWLIRPFLYAAKDE 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKK 222 I + Q +S+ D SN D + R R R+ V D+H ++ K+ + Sbjct: 173 ILEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSE 224 >gi|15923499|ref|NP_371033.1| hypothetical protein SAV0509 [Staphylococcus aureus subsp. aureus Mu50] gi|15926186|ref|NP_373719.1| hypothetical protein SA0467 [Staphylococcus aureus subsp. aureus N315] gi|148266968|ref|YP_001245911.1| hypothetical protein SaurJH9_0531 [Staphylococcus aureus subsp. aureus JH9] gi|150393014|ref|YP_001315689.1| hypothetical protein SaurJH1_0544 [Staphylococcus aureus subsp. aureus JH1] gi|156978837|ref|YP_001441096.1| hypothetical protein SAHV_0506 [Staphylococcus aureus subsp. aureus Mu3] gi|253315222|ref|ZP_04838435.1| hypothetical protein SauraC_03485 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005302|ref|ZP_05143903.2| hypothetical protein SauraM_02505 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794250|ref|ZP_05643229.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781] gi|258407233|ref|ZP_05680378.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763] gi|258420800|ref|ZP_05683736.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719] gi|258429626|ref|ZP_05688300.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299] gi|258446104|ref|ZP_05694265.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300] gi|258448012|ref|ZP_05696142.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224] gi|258453842|ref|ZP_05701815.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937] gi|269202129|ref|YP_003281398.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus ED98] gi|282895117|ref|ZP_06303337.1| cell cycle protein MesJ [Staphylococcus aureus A8117] gi|295407399|ref|ZP_06817196.1| cell cycle protein MesJ [Staphylococcus aureus A8819] gi|296276162|ref|ZP_06858669.1| hypothetical protein SauraMR_07424 [Staphylococcus aureus subsp. aureus MR1] gi|297246479|ref|ZP_06930319.1| cell cycle protein MesJ [Staphylococcus aureus A8796] gi|61216721|sp|Q99W94|TILS_STAAM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217307|sp|Q7A7A6|TILS_STAAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13700399|dbj|BAB41697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246277|dbj|BAB56671.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740037|gb|ABQ48335.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149945466|gb|ABR51402.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156720972|dbj|BAF77389.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788222|gb|EEV26562.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781] gi|257841191|gb|EEV65640.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763] gi|257843192|gb|EEV67605.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719] gi|257849685|gb|EEV73652.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299] gi|257855081|gb|EEV78023.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300] gi|257858702|gb|EEV81575.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224] gi|257864013|gb|EEV86768.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937] gi|262074419|gb|ACY10392.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus ED98] gi|282762535|gb|EFC02675.1| cell cycle protein MesJ [Staphylococcus aureus A8117] gi|285816208|gb|ADC36695.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus 04-02981] gi|294967756|gb|EFG43788.1| cell cycle protein MesJ [Staphylococcus aureus A8819] gi|297176666|gb|EFH35928.1| cell cycle protein MesJ [Staphylococcus aureus A8796] gi|312829004|emb|CBX33846.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128637|gb|EFT84640.1| hypothetical protein CGSSa03_01650 [Staphylococcus aureus subsp. aureus CGS03] gi|329725061|gb|EGG61556.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21172] Length = 431 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYIRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|302332222|gb|ADL22415.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 431 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|212636261|ref|YP_002312786.1| cell cycle protein MesJ [Shewanella piezotolerans WP3] gi|212557745|gb|ACJ30199.1| Cell cycle protein MesJ [Shewanella piezotolerans WP3] Length = 452 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I++A SGG DS L L L + + ++ + V H L + A D ++ + Sbjct: 23 PRKIVLAYSGGVDSEILAQGLS--LFAKQQPQFEYQLVHVHHGLSDNADDWAKHCQAQAA 80 Query: 79 RLRIAHSVVSWKNS-KPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ +V + + P+ + A AR RY AL+ A+ A ++MTAH DDQLET+ Sbjct: 81 LYKLPCTVARVEVTIAPRVSIEAQARSVRYQALL---AQMEAADILMTAHHQDDQLETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R KG LS M +D N W+ RP L + ++ ++ ++ IS +D SN D Sbjct: 138 LALKRGLGPKG--LSAMGKVQSFDKNKWLIRPLLDISKSEVEAYAMKHQISHIQDESNFD 195 Query: 197 DRFERVRVRRFV 208 ++++R +R+ + Sbjct: 196 EKYDRNFLRQSI 207 >gi|197286113|ref|YP_002151985.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320] gi|259533731|sp|B4F252|TILS_PROMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194683600|emb|CAR44491.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320] Length = 441 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 13/223 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + HILV SGG DS LL L L D+ ++ +AI V H L A D + + Sbjct: 14 RQIGSHTHILVGFSGGVDSTVLLHGL-VCLRDKYQLPLELTAIYVHHGLNSKADDWLTHC 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +++ + + + G+ AREARY ++ + N L+ H DDQ E Sbjct: 73 EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQP-NQVLVTAQHQ-DDQAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + ++ ++ RP L RE I ++ + + W ED S Sbjct: 131 TFLLALKR--GSGPAGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N DDR++ R F+R LH + L +++ V + A+ Sbjct: 188 NQDDRYD----RNFLR---LHVMPLLTQRWPHFSQAVTRSAAL 223 >gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2] gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2] Length = 475 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 15/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRL 80 I+ AVSGG DSM LL L I A V+H R+ A + E V +L Sbjct: 28 IVAAVSGGPDSMALLHLLWQAARQEQLTVI---AAHVNHGFRKDASRQEAEVVRQYAEKL 84 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + ++ +TG+ A AARE RYA + E A A+ I AH DDQ ETV Sbjct: 85 GVPFEMIELDMPAYIEETGINAQSAAREKRYAFLHETAVKYGASAIALAHHADDQAETVL 144 Query: 137 MRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 MR R G GL+G+ + N+ + RP LR + DI + +R++ +C D SN Sbjct: 145 MRVIR-----GAGLTGLAGMAPKRKEKNVELIRPLLRMNKSDIVRYCSERDVPYCLDSSN 199 Query: 195 TDDRFERVRVR 205 + + R VR Sbjct: 200 NERYYFRNVVR 210 >gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114] gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114] Length = 333 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 21/202 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F+ + ++ VSGG DSM L L ++S+ +++F + +DH +R+ + E Sbjct: 25 FLDKNLKEKKFVIGVSGGPDSMALAYLSKVYSIDRNKTF-----ECVIIDHGVRKNSGKE 79 Query: 70 VRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V + +I ++ + ++NS + + AR RY I E K I+ H Sbjct: 80 AKKVKSALLKHKIKSNIFKIKFENS---SNFHSEARVKRYDKIIEFCKRKKVKKILLGHH 136 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ+E Y+R R G GL+G+ + N++ RPFL ++ ++ + ++N Sbjct: 137 LDDQVENFYIRLSR-----GSGLTGLSPIKKVSKYKNIYFLRPFLNTKKNELVK-IAKKN 190 Query: 186 ISWC-EDPSNTDDRFERVRVRR 206 S+ DPSN D++ R RVR+ Sbjct: 191 FSFSVNDPSNFKDKYLRSRVRK 212 >gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 472 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 18/197 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCS 78 A I+V VSGG DSM LL ALH+ L RS I A VDH R +E +R+V C Sbjct: 18 ATIIVGVSGGPDSMALLHALHT-LCGRSANII---AAHVDHRFRGAESEEDMRFVQAYCK 73 Query: 79 RLRIAH-----SVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++A +V ++ K GL AAAR+ RY + A + AH DDQ Sbjct: 74 AEQLACETAQINVTAYAREK---GLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGDDQ 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ M+ + G GL+GM + I RPFL +E+I + + ++S+ D Sbjct: 131 VETMLMKLAK--GALGAGLAGMQPARRFGTGRII-RPFLTITKEEILHYCRENSLSYRTD 187 Query: 192 PSNTDDRFERVRVRRFV 208 SN D + R R R+ V Sbjct: 188 ESNATDDYTRNRFRKTV 204 >gi|183597578|ref|ZP_02959071.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827] gi|188023075|gb|EDU61115.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827] Length = 450 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 8/208 (3%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L P + + + + ILV SGG DS LL AL+ + ++ AI + H Sbjct: 1 MALQPQAIIEQVLNKIGHFRKILVGFSGGVDSTVLLHALYQI-KKYQLPSLEIRAIHIHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A D + +C + I G+ AAAREARY + + Sbjct: 60 GLNVRADDWEAHCQHLCEQWHIPFVCTHVTVDPSNRGIEAAAREARYQ--AYRNELAEGE 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRREDI 177 +I TA DDQ ET + +R GLS M + + W+ RP L R D+ Sbjct: 118 IIATAQHLDDQAETFMLALKR--GSGPAGLSSMPELSPFYAEKGETWLLRPLLAISRGDL 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205 ++ + ++W ED SN DDR++R +R Sbjct: 176 ENYAREYPLTWVEDDSNQDDRYDRNFLR 203 >gi|295425667|ref|ZP_06818354.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664] gi|295064683|gb|EFG55604.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664] Length = 420 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DSM LL L+ + +F I DH LR ++ E +++ C Sbjct: 19 LVIAASGGPDSMALLDMLNELRKSHNFSLI---VAHFDHQLRVDSQKETELLTEYCHSHN 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W K +P+TG+ AAAR RYA +S+ A ++TAH DD LE + ++ Sbjct: 76 LPLAKGVWLKKEQPRTGIEAAARHFRYAFLSQVVAQYQADYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGM----GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + M + M T L RP L + ++ + Q +I++ ED +N Sbjct: 136 RSGNPQEMNSLQAVGKMHGTALL-------RPLLSTSKAELLEYDQQHHIAFIEDETNAK 188 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 189 DDTLRNRLRHHV 200 >gi|326626600|gb|EGE32943.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 430 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G C L L RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|300812074|ref|ZP_07092522.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496913|gb|EFK31987.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 431 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 17/203 (8%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL L R G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W S P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRN 185 D LE + ++ R + M L ++ W + RP L + D+ ++ ++ Sbjct: 126 DLLENILLKLVRSGIPREM-------NSLKPVSQWGQVKLVRPLLAVGKADLLAYAKKQG 178 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + + ED +N R R+R+ V Sbjct: 179 LEYVEDETNFTGITARNRLRQEV 201 >gi|323442047|gb|EGA99682.1| hypothetical protein SAO46_2006 [Staphylococcus aureus O46] Length = 431 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|222099059|ref|YP_002533627.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359] gi|221571449|gb|ACM22261.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359] Length = 419 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 20/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM LL L + KI+ +DH +RE+++ + ++V D+C + Sbjct: 13 VLVAVSGGIDSMTLLYILKKL---SPLLKIEVLGAHLDHRIRESSERDRKFVEDICRQWN 69 Query: 82 I--AHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +VV WK S L ARE RY+ + + AK + AT I AH +D LETV Sbjct: 70 VPVETAVVDVPALWKGS--GKTLEEVAREVRYSFLEKVAKKLGATKIALAHHKNDLLETV 127 Query: 136 YMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R G G G+ C + + + RPFL +R +I + ++ I + D +N Sbjct: 128 LHRLVR-----GTGPLGIACIPVKREKYI---RPFLVFKRSEIEDYAQKQKIPFVVDETN 179 Query: 195 TDDRFERVRVR 205 D ++ R +R Sbjct: 180 YDIKYTRNFIR 190 >gi|15612646|ref|NP_240949.1| cell-cycle protein [Bacillus halodurans C-125] gi|61216744|sp|Q9KGH8|TILS_BACHD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|10172695|dbj|BAB03802.1| cell-cycle protein [Bacillus halodurans C-125] Length = 462 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 93/217 (42%), Gaps = 28/217 (12%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ IE R F + ++VAVSGG DSM LL H + S R I A +H L Sbjct: 6 LNFIEEHRLFASGGL----VIVAVSGGPDSMALL---HFLFSHREQLGITVMAAHGNHQL 58 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHA 114 R+ A +E +V C ++H + V + G+ ARE RY + A Sbjct: 59 RQEADEEETFVHQFC----LSHGILFTSARLPVKERMEMSGEGVQVTARELRYKWLEAEA 114 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171 K A I T H DDQ+ET+ M+ R + G+ + +L I RPFL Sbjct: 115 KKHGAAFIATGHHGDDQIETILMKQVRGTFPLSRGGIPVRREVGDVL------IVRPFLG 168 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + I + + NI DPSN + R R R + Sbjct: 169 ITKGQIEHYCKEVNIEPKRDPSNNASSYTRNRFRHTI 205 >gi|167553350|ref|ZP_02347099.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197262939|ref|ZP_03163013.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241194|gb|EDY23814.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205322182|gb|EDZ10021.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 430 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G C L L RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|332653694|ref|ZP_08419438.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae bacterium D16] gi|332516780|gb|EGJ46385.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae bacterium D16] Length = 470 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 34/210 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD---V 76 +L AVSGG+DS+ LL L+ + + +F A DH LR E+ +D ++V + + Sbjct: 21 VLCAVSGGADSVYLLHRLYCLRRELNF---TLVAAHYDHRLRGAESTQD-AKFVEEFVRL 76 Query: 77 CS------------------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 C RL V+ + ++ + GL AR+ RYA + A+ + Sbjct: 77 CCPAERLYAPEGPGKELPGVRLITGGGDVAGEAARLRQGLEETARQMRYAFLQTAAQEVG 136 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A LI TAH D ETV + + +G GL G+ NL RP L RE+I Sbjct: 137 ANLIATAHNASDNAETVLL-----HLGRGSGLRGLAGMPPKRGNLI--RPLLTTSREEIE 189 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++L R + W ED +N DD + R R+R V Sbjct: 190 NYLRYRGLPWREDATNRDDAYARNRLRHQV 219 >gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group] Length = 694 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 40/295 (13%) Query: 10 RFFVRSL----VYPAH-ILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIK---- 52 R F R + V+P H + V VSGG DSM L + + D G + Sbjct: 55 RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 114 Query: 53 -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYA 108 + VDH LR + DE + V D + + + + W N +P+ G + AARE RY Sbjct: 115 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 174 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----YD--- 160 + + +++ AH DDQ E +R R+ G+ + + YD Sbjct: 175 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 234 Query: 161 ---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-- 215 + + RP L ++D+ N W EDP+N + R R+R +R + + Sbjct: 235 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 294 Query: 216 ---LYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ-DILNIDSTLL 264 L+ + + R ++NA +M++ K LT+ H ++I + + D N+D L Sbjct: 295 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 349 >gi|109897591|ref|YP_660846.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c] gi|109699872|gb|ABG39792.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c] Length = 464 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 12/200 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 RS P H++VA S G DS LL AL L+ + SA+ + H L + A ++ Sbjct: 16 RSHPSPLHLVVAYSAGIDSHVLLHALWQ-LTQADISSFQLSALYIHHGLSDNADKWQQHC 74 Query: 74 SDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + VCS L + HS + + G+ A AR+ARYA + E A +++ A +DQL Sbjct: 75 ATVCSELEVEFHSAKVFVDVASGNGIEAQARDARYAKLVEVAPP--GSVVALAQHQNDQL 132 Query: 133 ETVYMRSQRDYAEKGMGLSGM------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 ETV ++ +R KG LSGM + RP L + I + + + Sbjct: 133 ETVLLQLKRGAGPKG--LSGMGRLFSRAKPSTPQEQVHFFRPLLEISQAQIHRYADEHAL 190 Query: 187 SWCEDPSNTDDRFERVRVRR 206 W ED SN + FER +RR Sbjct: 191 VWQEDESNQNVDFERNFIRR 210 >gi|323438741|gb|EGA96481.1| hypothetical protein SAO11_2434 [Staphylococcus aureus O11] Length = 431 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241] gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241] Length = 476 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 6 VEKVDDFVKQYDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117 R + + +++++V D+C L + + S+ Q G+ A AARE RY + K Sbjct: 63 RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + I DPSN + + R R+R++V Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210 >gi|251809816|ref|ZP_04824289.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|251806684|gb|EES59341.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|329733025|gb|EGG69364.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028] Length = 432 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 49/274 (17%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C + Sbjct: 12 AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68 Query: 80 LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I +V+ NS Q AR+ RY + + A +++TAH DDQ Sbjct: 69 HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123 Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 LET+ RS R+ +G++ Y + RP L ++ +I ++ I Sbjct: 124 LETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175 Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230 + ED SN D ++ R +R+ + ++ H L LK+K + D+ ++ + Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 NN V+ KYLT S A ++ +NI S ++ Sbjct: 235 NNEVSK--SKYLTYSF-SRTAFNELNVNIKSVVM 265 >gi|168230546|ref|ZP_02655604.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471349|ref|ZP_03077333.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457713|gb|EDX46552.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335048|gb|EDZ21812.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 430 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G C L L RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|21282193|ref|NP_645281.1| hypothetical protein MW0464 [Staphylococcus aureus subsp. aureus MW2] gi|49485373|ref|YP_042594.1| hypothetical protein SAS0466 [Staphylococcus aureus subsp. aureus MSSA476] gi|297207388|ref|ZP_06923827.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910347|ref|ZP_07127800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH70] gi|61217254|sp|Q6GBX9|TILS_STAAS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217380|sp|Q8NXZ4|TILS_STAAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21203629|dbj|BAB94329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49243816|emb|CAG42241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887951|gb|EFH26845.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888336|gb|EFK83523.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH70] Length = 431 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C R Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEVYCERH 69 Query: 80 --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDID----LHALY-LKMKKFQD 225 D SN D+++ R +R R + ID L A + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKASHLLKLKQWHD 220 >gi|126653286|ref|ZP_01725397.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905] gi|126589960|gb|EAZ84089.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905] Length = 468 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 19/197 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79 H+L+AVSGG DSM LL H + + I+ A+ VDH LR A E R +V C Sbjct: 22 HLLIAVSGGVDSMALL---HYFVQTQEHWNIRVEAVHVDHMLRGEASAEDRAFVQKYCDE 78 Query: 80 LRI-AH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + H ++++ +N Q R RY E NA ++TAH DDQ Sbjct: 79 NDVYLHATAISIPTILALENGNTQ----LICRRERYRYFKEVLYKTNANKLVTAHHADDQ 134 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LE+V M ++ M G+ ++ I RPFL + +I +LL++ +++ ED Sbjct: 135 LESVLMALTKNATMNSM--QGIRPQRYFEGKSLI-RPFLTVTKTEIGEYLLRKGLNYRED 191 Query: 192 PSNTDDRFERVRVRRFV 208 SN+ D + R R R V Sbjct: 192 VSNSKDTYVRNRFRHHV 208 >gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426] gi|61216398|sp|Q5L3T3|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 464 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 14/211 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL H LS R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI A V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R K G +G+ + I RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ Q +S DPSN D + R R R + Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHI 206 >gi|315634539|ref|ZP_07889824.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393] gi|315476766|gb|EFU67513.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393] Length = 436 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 20/208 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DS LL AL + L ++ + AI + H L A + +C + Sbjct: 18 TQFLIGFSGGLDSTALL-ALFAKLREKQ-PHFQLRAIHIHHGLSANADAWSAHCQQMCRQ 75 Query: 80 ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L+I H VS +N G+ A AR+ARY I++ + + + TAH DQ ET Sbjct: 76 FHIPLQIQHVNVSTEN-----GIEAGARQARYEAIAQ--QILPTEWLATAHHQQDQTETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ +R +G+G + + +Y + I RP L R+ + +F+ Q +SW ED SN Sbjct: 129 FLALKRGSGVQGLG-AMPSKSNVYSVP--IFRPLLNFSRQQLLAFVQQEGLSWIEDESNE 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223 D++++ R F+R+I L L + F Sbjct: 186 DNQYD----RNFLRNIVLPELRQRWAHF 209 >gi|322420025|ref|YP_004199248.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18] gi|320126412|gb|ADW13972.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18] Length = 458 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 27/210 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VAVSGG+DS+ LL L + +R + ++HCLR E+ DE ++V+D+ +R Sbjct: 20 VVVAVSGGADSVALLDILTRLDEER----LNLIVAHLNHCLRGAESDADE-QFVADLAAR 74 Query: 80 -----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I V S + + L A R ARYA E A+ A I AH DDQ ET Sbjct: 75 YQLPFLAIRVDVASLAAADGLS-LEDAGRRARYAFFHEVARRRGAGSITVAHHLDDQAET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V +R R G G +G+ NL + RP L+ R ++ +L R +SW D +N Sbjct: 134 VLIRLLR-----GAGGAGLSAMAAVGDNL-VKRPLLQVSRCELEGYLNNRGLSWRTDSTN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 D R +R H L ++K+ Sbjct: 188 ADTTILRNSIR--------HELIPALRKYN 209 >gi|121602616|ref|YP_988505.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583] gi|120614793|gb|ABM45394.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583] Length = 660 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/86 (44%), Positives = 53/86 (61%) Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 ++VDH LR + E V+ +C I H +V W+ KP+T + AR ARY L+ + A+ Sbjct: 134 VTVDHQLRAESALEAENVAALCRAYHIKHVIVRWEGEKPKTNIAQQARIARYDLLFKEAE 193 Query: 116 TINATLIMTAHTFDDQLETVYMRSQR 141 ATLIMT HT +DQ+ET +MR QR Sbjct: 194 KQGATLIMTGHTLNDQVETYHMRRQR 219 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 25/204 (12%) Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 RP L +R+ +R++L + SW +DP+N D +FERVRVR H+L+ +K D+ Sbjct: 381 RPLLGVKRKILRAYLSLQGTSWIDDPTNEDRKFERVRVR--------HSLH--QQKLADI 430 Query: 227 RVKVNNAVA------------MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 KVN+A +L + R I L ++ F + + Sbjct: 431 AKKVNHAAVQRRKQAQDIADLILALDICVEYGRCFIRKPAPFLQQHASFPFVVGLFVVLM 490 Query: 275 CGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP 332 G LP + ++ R L L+ ++ ++ VI+ + R RN+ IL+P Sbjct: 491 GGNPYLLPSRKVAALGR-KLSLQHPEKQRFTLAGSVIEYNHKGIVCWREARNIKEEILFP 549 Query: 333 EETTVWDGRYQFQNLSDSLIQIGP 356 ++ +WDGRYQ N D I++GP Sbjct: 550 GQSLLWDGRYQITNHDDEAIRVGP 573 >gi|325267936|ref|ZP_08134585.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Kingella denitrificans ATCC 33394] gi|324980622|gb|EGC16285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Kingella denitrificans ATCC 33394] Length = 432 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 9/191 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG+DS+ LL AL + L D +FG SA+ V H L A D ++ D RL Sbjct: 25 ICVGLSGGADSVVLLHAL-AALRD-TFGLADLSAVHVHHGLNAAADDWQQFCRDYAQRLG 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S + + G+ AAAR ARYA+ +E NA + AH DDQ+ET ++ + R Sbjct: 83 VGFSAAQVQVDAGKLGIEAAARTARYAVFAEQ----NADFVALAHHRDDQIETFFLAALR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + LW RP L R +I + + + D SN + F R Sbjct: 139 GGGLRALSAMPEQRALTEKTVLW--RPLLAFSRAEIEQYAQDNALMFVHDDSNENPAFLR 196 Query: 202 VRVR-RFVRDI 211 +R R++ D+ Sbjct: 197 NWLRGRWLPDL 207 >gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group] Length = 693 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 40/295 (13%) Query: 10 RFFVRSL----VYPAH-ILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIK---- 52 R F R + V+P H + V VSGG DSM L + + D G + Sbjct: 54 RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 113 Query: 53 -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYA 108 + VDH LR + DE + V D + + + + W N +P+ G + AARE RY Sbjct: 114 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 173 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----YD--- 160 + + +++ AH DDQ E +R R+ G+ + + YD Sbjct: 174 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 233 Query: 161 ---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-- 215 + + RP L ++D+ N W EDP+N + R R+R +R + + Sbjct: 234 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 293 Query: 216 ---LYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ-DILNIDSTLL 264 L+ + + R ++NA +M++ K LT+ H ++I + + D N+D L Sbjct: 294 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 348 >gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b] gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B] gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b] gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B] Length = 430 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P+ GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|311280843|ref|YP_003943074.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1] gi|308750038|gb|ADO49790.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1] Length = 436 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 15/193 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 VR L ILVA SGG DS LL L V +S I+ AI V H L A VR+ Sbjct: 9 VRRLQPYRQILVAFSGGLDSTVLLHQL--VCWRQSAPDIQLRAIHVHHGLSPNADAWVRH 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C++ ++ +V + G+ A AR+ARY + + ++ TA DDQ Sbjct: 67 CQQLCAQWQVPLAVARVTLADDGLGIEAHARQARYEAFRDALQP--GEVLATAQHLDDQS 124 Query: 133 ETVYMRSQRDYAEKGM----GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 ET+ + +R G+ G++ T L RP L RE + + +Q + W Sbjct: 125 ETLLLALKRGSGPAGLSAMPGVAPFAGTRLV-------RPLLEMSRESLMQWAIQHQLRW 177 Query: 189 CEDPSNTDDRFER 201 ED SN DD +ER Sbjct: 178 IEDESNQDDAYER 190 >gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a] gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a] Length = 418 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 8 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 64 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P+ GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 65 LQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 178 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 179 ETLRNRLRHFV 189 >gi|82750216|ref|YP_415957.1| hypothetical protein SAB0458 [Staphylococcus aureus RF122] gi|82655747|emb|CAI80146.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 431 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78 HI+VAVS G DSM LL L L+D K + + V+H +R + +E R++ C Sbjct: 13 HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCEGH 69 Query: 79 -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L ++HS+ + AR RY E + A +++TAH DDQ Sbjct: 70 HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ R + + +G + Y I RP L +++I+ F + +I + E Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179 Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225 D SN D+++ R +R R + ID + + LK+K++ D Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220 >gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048] gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603] gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196] gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621] gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621] gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196] gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603] gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048] Length = 480 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + +++++V +C L + ++ + Q G+ A AARE RYA + K Sbjct: 67 RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVN 231 + + + DPSN + + R R+R++V YLK +KFQ V++ Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQ 237 Query: 232 NAVAML 237 A L Sbjct: 238 EDEAYL 243 >gi|196230473|ref|ZP_03129335.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428] gi|196225403|gb|EDY19911.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428] Length = 311 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ VSGG DS+ LL LH+ G + +DH LR + + ++V + +L Sbjct: 12 LIGVSGGRDSVALLHQLHAA------GFRELIVCHLDHALRAESVADAQFVEKLARKLDY 65 Query: 83 AHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 A + V+ + + L AREAR + + A+ + + AH DDQ+ET+ Sbjct: 66 AFVLQREDVATLAKQRKKSLETTAREARISFFTHVAREHDCPRLFLAHHADDQVETLLFN 125 Query: 139 SQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ +S + + + L ISRPFL RE+I +++L+ +S+ ED SN+D Sbjct: 126 LFRGAGAAGLAGMSALSTRTIDGVTLQISRPFLGTWREEIEAYILRHKLSFVEDASNSDR 185 Query: 198 RFERVRVR 205 +F R R+R Sbjct: 186 KFTRNRLR 193 >gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8] gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8] Length = 507 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +++AVSGG DS+ L + + G+ A +DH LR + + +V + RL Sbjct: 19 LVLAVSGGGDSVALALLVKEA------GRQAVVA-HLDHGLRPESPLDQAFVRALAERLG 71 Query: 81 ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R+ + ++ + L A ARE RYA + A+ + A I+TAHT DDQ ET Sbjct: 72 FPFFTERVEVARIAQARGE---NLEAVAREVRYAFLHRVAREVGARAILTAHTLDDQAET 128 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V ++ + A T + + + RP L RE++R++L R +W EDP+N Sbjct: 129 VLLQLLQGTARA---------TGIREREGIVVRPLLAHTREELRAYLRARGEAWREDPTN 179 Query: 195 TDDRFERVRVRRFV 208 D +R +R FV Sbjct: 180 QDPALDRNFLRLFV 193 >gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted) [Schizosaccharomyces pombe 972h-] gi|1723551|sp|Q10441|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted) [Schizosaccharomyces pombe] Length = 456 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 24/230 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM L++ S FG +F A VDH +R+ + +E +R+ I Sbjct: 27 IAVSGGVDSM--LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQTIWNLNRMLI 84 Query: 83 AHSV--VSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++W N T L ARE RY +++ T N I TAH +DQ ET++MR Sbjct: 85 PNVYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHANDQAETIFMR 144 Query: 139 SQRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 R GL M D+I N+ + RP L + I + Q I+W E Sbjct: 145 LLRRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNTAKQHGIAWEE 204 Query: 191 DPSNTDDRFE-RVRVRRFVRDIDLH-ALYLKMKK----FQDLRVKVNNAV 234 DP+N D R +RRF ++ H AL ++ K FQ L+V ++N V Sbjct: 205 DPTNADINLTPRNAIRRF---LNQHAALTVEATKLATAFQSLQVNIDNKV 251 >gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC 25745] gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC 25745] Length = 456 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVS G DS L+ AL ++ + V+H LRE + +E R++ C + + Sbjct: 21 IVVAVSTGVDSTVLINAL---INSTKIKHQQLIVAHVNHQLREQSIEEERFLHKWCRQHQ 77 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ PQ G+ AAARE RY + +A +++TAH D+Q E M+ Sbjct: 78 ITFMETDWPKSQHPQHGVEAAAREFRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQVI 137 Query: 141 RDYAEKGM--GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G L+G+ + + W+ RPFL+ ++ + + + W ED +N Sbjct: 138 RG----GWLNQLNGIPERRTFAQG-WLIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTE 192 Query: 199 FERVRVR 205 F R RVR Sbjct: 193 FLRNRVR 199 >gi|332532221|ref|ZP_08408102.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis ANT/505] gi|332038319|gb|EGI74764.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 434 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 11/185 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI- 82 VA+SGG DS+ LL + ++ D I SAI V H L + A D + +VC L + Sbjct: 27 VALSGGVDSVVLLHLMRTLKVDNP--AINVSAIYVHHGLSQYADDWQHFCKNVCIELNVP 84 Query: 83 --AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A VV + S+ T L A AR+ARY + E + ++I+ +DQ+ET +R + Sbjct: 85 FEAAKVVIEQQSR--TSLEAQARDARYKALDELSP--QGSIILLGQHLNDQVETFLLRLK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+G M RP L R DI +F Q +IS D SNTD+ F+ Sbjct: 141 RGSGLKGLG--SMYKERFLQSGRICFRPLLNVARSDIEAFATQFSISHITDDSNTDESFD 198 Query: 201 RVRVR 205 R +R Sbjct: 199 RNFLR 203 >gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062] Length = 297 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 26/192 (13%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108 KIK VDH LR + E V + ++ I V+ WK KP + + AREARY+ Sbjct: 12 NKIKVKFFLVDHRLRNESTKEATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYS 71 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLW 164 L+S+ K N ++ H +D +E +R R G GL+G+ ++ Y D +L Sbjct: 72 LLSKECKKNNIKYLLLGHHSNDLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLN 126 Query: 165 ISRPFLRCRREDIRSFLLQRNIS------WCEDPSNTDDRFERVRVRRFV-----RDIDL 213 I RP L + D+ NIS + +DPSN ++ ++R R+R + +DL Sbjct: 127 ILRPLLNLEKNDL------INISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDL 180 Query: 214 HALYLKMKKFQD 225 L L + +D Sbjct: 181 KKLKLTIDNLRD 192 >gi|242279442|ref|YP_002991571.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638] gi|242122336|gb|ACS80032.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638] Length = 340 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV VSGG DS LLI + ++L+ +S G++ F A +DH LR+ + + +V ++C+ L Sbjct: 39 MLVGVSGGIDSTALLI-IATLLARKSGGRV-FCA-HIDHNLRKESAGDRAFVEELCTELG 95 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V+ ++ GL A R RY + K +A ++ AH D E V M Sbjct: 96 VPVKSLKADVAGYAAERSIGLEEAGRIIRYDFFKQCLKKFDADFLLLAHHIGDLSEDVVM 155 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G + YD + RP L ++ + FL W ED SNT D Sbjct: 156 RLIR-----GTGWPALAGMDAYDPKRKLLRPLLSTDKDSLEDFLRSIGCPWREDESNTCD 210 Query: 198 RFERVRVRRFV 208 + R R+R + Sbjct: 211 DYTRNRIRNHI 221 >gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4] gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4] Length = 476 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 26/246 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 6 VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117 R + +++++V +C L + ++ + Q G+ A AARE RYA + K Sbjct: 63 RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R K G +G+ + N ++ RP L +E+I Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVN 231 + + + DPSN + + R R+R++V YLK +KFQ V++ Sbjct: 180 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQ 233 Query: 232 NAVAML 237 A L Sbjct: 234 EDEAYL 239 >gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] Length = 507 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +++AVSGG DS+ L + + G+ A +DH LR + + +V + RL Sbjct: 19 LVLAVSGGGDSVALALLVKEA------GRQAVVA-HLDHGLRPESPLDQAFVRALAERLG 71 Query: 81 ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R+ + ++ + L A ARE RYA + A+ + A I+TAHT DDQ ET Sbjct: 72 FPFFTERVEVARIAQARGE---NLEAVAREVRYAFLHRVAREVGARAILTAHTLDDQAET 128 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V ++ + A T + + + RP L RE++R++L R +W EDP+N Sbjct: 129 VLLQLLQGTARA---------TGIREREGIVVRPLLAHTREELRAYLRARGEAWREDPTN 179 Query: 195 TDDRFERVRVRRFV 208 D +R +R FV Sbjct: 180 QDPALDRNFLRLFV 193 >gi|145636327|ref|ZP_01791996.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH] gi|145270492|gb|EDK10426.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH] Length = 301 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 9/185 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DS +L++L + L + + AI + H L A ++ ++C + Sbjct: 20 LIALSGGLDST-VLLSLFAKLRQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQNLCDQF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AREARY I +H +T +++TAH +DQ ET ++ + Sbjct: 79 QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEVLVTAHHLNDQTETFFLALK 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + ++L+ + ++ RP L R + + + ++W D SN D+RF+ Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMPIF--RPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFD 192 Query: 201 RVRVR 205 R +R Sbjct: 193 RNFLR 197 >gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans] gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Herminiimonas arsenicoxydans] Length = 465 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DS LL L + + ++ A V H L A + + C+ L Sbjct: 34 IAIAYSGGLDSAALLYLLRAYATQHG---LELFAFHVHHGLSLNADQWLAHCQQQCAGLG 90 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A V N + ++G+ AAR +RYA + E + + L++TAH DDQ ETV ++ Sbjct: 91 VAFDARRVQIAN-QDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQL 149 Query: 140 QRDYAEKGMGLSGM-----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R GLSGM +L D L + RP L+ R D+ + I++ ED SN Sbjct: 150 LR--GSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESN 207 Query: 195 TDDRFERVRVRRFV 208 D R+ R +R V Sbjct: 208 LDPRYARNALRHQV 221 >gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01] gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01] Length = 440 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 10/179 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +A SGG DS + LH + + + ++ SAI V H L+ A + + VC+RL I Sbjct: 23 IAFSGGLDSS---VLLHLLAAWARYEELPALSAIHVHHGLQPAADGWPEHCAQVCTRLGI 79 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V P L AAR RYA +E + + +++ A DDQ ET+ R R Sbjct: 80 PLDIVR-VQVAPGASLEQAARRVRYAAFAE--RLGSGEVLLGAQHRDDQAETLLFRLLRG 136 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + + RP L C R +++++ +R ++W EDPSN D+RF R Sbjct: 137 AGVRGLAAMPASRPLGQGS---LVRPLLDCSRAELQAYAQRRGLAWVEDPSNADERFSR 192 >gi|325125152|gb|ADY84482.1| Putative cell cycle protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 431 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 9/202 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 S F L + LVA SGG DSM LL L R G + A +DH LR ++ Sbjct: 8 SAFFAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQ 62 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E + + C + ++ W S P++GL AAAR+ RY + E A+ + A ++TAH Sbjct: 63 KESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAH 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD LE + ++ R + M + + + RP L + D+ ++ ++ + Sbjct: 123 HGDDLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGL 179 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 + ED +N R R+R+ V Sbjct: 180 EYVEDETNFTGITARNRLRQEV 201 >gi|73663556|ref|YP_302337.1| hypothetical protein SSP2247 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496071|dbj|BAE19392.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 431 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 29/234 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78 HI++AVS G DSM LL L + L D S+ K+ + + V+H +R AK+E ++ C Sbjct: 15 HIVLAVSTGVDSMVLLHELITRLKD-SYAKL--TCLHVNHNIRPIAKEEEYFLKQFCKAH 71 Query: 79 --RLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + H V+ NS + AR ARY E + A +++TAH DDQ+ Sbjct: 72 HVELYVRHLDLSDVIEKGNS-----IENDARVARYQWFDEMMYELKADILLTAHHQDDQI 126 Query: 133 ETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET++ R + + +G++ Y I +P L + +IR + + + + ED Sbjct: 127 ETIFYRVMTGRSTRSSLGMAYQTTRASYQ----ICKPLLSTTKNEIRDYQVMHRVPYYED 182 Query: 192 PSNTDDRFERVRVR-RFVRDIDLHA-----LYLKMKKFQDLRVKV--NNAVAML 237 +NT + + R +R R + +I+ +A +K+K++ D +++V N AVA + Sbjct: 183 ETNTQNHYVRNDIRNRILPEINENAQLATDQLIKLKEWHDEQLEVINNEAVAFI 236 >gi|104773521|ref|YP_618501.1| hypothetical protein Ldb0367 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513516|ref|YP_812422.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422602|emb|CAI97205.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092831|gb|ABJ57984.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 431 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 9/202 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 S F L + LVA SGG DSM LL L R G + A +DH LR ++ Sbjct: 8 SAFFAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQ 62 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E + + C + ++ W S P++GL AAAR+ RY + E A+ + A ++TAH Sbjct: 63 KESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAH 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD LE + ++ R + M + + + RP L + D+ ++ ++ + Sbjct: 123 HGDDLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGL 179 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 + ED +N R R+R+ V Sbjct: 180 EYVEDETNFTGITARNRLRQEV 201 >gi|237747645|ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] gi|229379007|gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] Length = 473 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 7/202 (3%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 SV F ++ + A I +A SGG DS LL H + F V H L A Sbjct: 30 SVSFSLKESLKNARIAIAYSGGLDSSVLLHLAHRFAIENDCALFAFH---VHHGLNPHAD 86 Query: 68 DEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D + + + C RL ++ + + + G+ A ARE RY + E + + L++TAH Sbjct: 87 DWLAHCENECIRLGVSFDSQRVQIDPQSGDGIEAEAREKRYRALGEMCRKHDIPLLLTAH 146 Query: 127 TFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DDQ+ETV MR GM S +L D L++ RP L R+++ S+L++ Sbjct: 147 HEDDQVETVLLQLMRGTGVAGLSGMEASSHSPELLGDETLFLGRPLLSVSRKELASWLVE 206 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 I+ +D SN D + R +R Sbjct: 207 AGITHIDDDSNDDVAYTRNAIR 228 >gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 454 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 17/207 (8%) Query: 6 IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR ++ L+ P +L+ VSGG DSM LL +H + ++ G + + ++H L Sbjct: 2 LRKVREYIWEEKLLEPGKKVLLGVSGGPDSMALLHIMHKLTTEMDLG---LAVLHLNHGL 58 Query: 63 RETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R A E +V + C I + + + + L A R+ RY E + + Sbjct: 59 RPEAAAEEEFVREHCRNWGIDFYSRQADIRALALQEKKTLEEAGRDCRYRYFFEQLEELQ 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I TAH DDQ ETV + R G GL G+ + L RP L + +I Sbjct: 119 ADYIATAHHQDDQAETVLLHLLR-----GSGLKGLRGIMPRKGQLL--RPLLALSKAEII 171 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 +L + I +C D SN D +F R R+R Sbjct: 172 HYLDENQIPYCLDQSNNDLKFLRNRIR 198 >gi|90020884|ref|YP_526711.1| GntR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950484|gb|ABD80499.1| transcriptional regulator, GntR family [Saccharophagus degradans 2-40] Length = 429 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L A + VA SGG DS LL AL SVL +K A+ V+H L A + R Sbjct: 12 ITALSPQACVWVAFSGGLDSTVLLHAL-SVLG------VKCHAVHVNHGLSINADNWQRQ 64 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 S S+ IA + V S G+ AAR ARY I + +++T H DDQ+ Sbjct: 65 CSVFASQREIAFTAVKVIVSAEGRGIEEAARVARYNAIEN--LLAPSDVLLTGHHRDDQI 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET ++R R +G+G ++ + + RP L R+ + + LQ+ ++W ED Sbjct: 123 ETFFLRLMRGAGLRGLGAMRRTRSLSQAI---LVRPLLNISRQSLHEYALQQGLTWIEDE 179 Query: 193 SNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 SN D ++R +R+ FV L A + +++K + V+ A L+ +Y Sbjct: 180 SNLDTHYDRNLLRQTFVP--QLKARWPQVEKNVETTVQHLQAAEDLLQEY 227 >gi|257456705|ref|ZP_05621895.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Treponema vincentii ATCC 35580] gi|257445898|gb|EEV20951.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Treponema vincentii ATCC 35580] Length = 485 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 29/203 (14%) Query: 21 HILVAVSGGSDSMGLLIA---LHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVS 74 H L+A SGG+DS LL+A L VLS R SA++V+H +R E+A D +V+ Sbjct: 24 HFLLACSGGADSTALLLAFRQLQPVLSCR------LSAVTVNHNIRSAEESAADSA-FVA 76 Query: 75 DVCSRLR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +CS I V+ + G AAR RY L + A +++A I+TA Sbjct: 77 GLCSGFEPAIPCIIEEIPAGEVARYAKERGRGTEDAARTLRYRLFEKTADSVSADFIVTA 136 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H D ETV MR +G G + + +I+ RP + R I FL Q+ Sbjct: 137 HNLSDVYETVLMR-----LFQGGGTASL--SIMPVRRGRYLRPLITVERNSIEEFLRQQG 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 I W ED +N + + R R+R ++ Sbjct: 190 IVWREDATNAGNTYLRNRIRHYL 212 >gi|15602154|ref|NP_245226.1| hypothetical protein PM0289 [Pasteurella multocida subsp. multocida str. Pm70] gi|61216731|sp|Q9CNY2|TILS_PASMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12720522|gb|AAK02373.1| MesJ [Pasteurella multocida subsp. multocida str. Pm70] Length = 431 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DS LL+ L + L ++ + AI + H L A V + +C ++ I Sbjct: 21 LIGFSGGLDSTALLL-LFAKLREKQ-PHLMLRAIHIHHGLSANADAWVTHCQQICQQVAI 78 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V G+ A AREARY I +H + + TAH DQ ET ++ +R Sbjct: 79 P-LIVEQVKIDQHKGIEAGAREARYQAIRQH--LLPNEMFATAHHQQDQTETFFLALKR- 134 Query: 143 YAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G GL+G+ + LY L I RP L R+ + ++ Q W ED SNTD R Sbjct: 135 ----GSGLAGLGAMQRKSTLYCLP--ICRPLLTFTRQMLLDYVKQAGCPWVEDESNTDSR 188 Query: 199 FERVRVRRFV 208 +ER +R V Sbjct: 189 YERNFLRHEV 198 >gi|218677908|ref|ZP_03525805.1| tRNA(Ile)-lysidine synthetase [Rhizobium etli CIAT 894] Length = 244 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 94/231 (40%), Gaps = 58/231 (25%) Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 ++ +H + + D L D +L Y L A+ GGQ PG MER++ F G+ Sbjct: 9 RHFRLHGGLLGQVMPDGLRQDRAILDYALGRLTAVFGGQPFAPGRAQMERLLSFATGGEP 68 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI----- 354 G ++ GRVV D R + L++TR R + L+L P E VWDGR + N S ++I Sbjct: 69 GRMTAGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRLKAVNRSGMTVEIEGPAA 128 Query: 355 --------------------GPQSYRKADVPS-------------------GIPPIIAQR 375 P ++ ++ P G+P +R Sbjct: 129 PSVIPVLVTGIQPPRVGAVNDPTTHDESSAPKDLGALDSCDEHRNEGGEGRGLPKAAWKR 188 Query: 376 ALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISF 412 A++S P GG PL APF RF+T+FD A S F Sbjct: 189 AIASAPVLSAGGVPLSPESEPTIHLTPYFAPFDRFLTRFDFIFANRLSAVF 239 >gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis] gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis] Length = 679 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 37/286 (12%) Query: 19 PAH-ILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEV--- 70 P H I + VSGG DS+ L + A S +S G + AI VDH LR +K+E Sbjct: 59 PQHRIAIGVSGGPDSVALCVLTAAWKSAGVAKSEGFVDGLLAIVVDHGLRPESKEEAQVV 118 Query: 71 -RYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTF 128 R VSD+ R IA SW +P+ G L AR+ RY + +++ AH Sbjct: 119 SRRVSDMGVRCEIA--CCSWYRGRPKQGHLQEEARDMRYQKLHSICLQHQIGVLLIAHHA 176 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLRCRRE 175 DDQ E +R R+ +GL+GM D L + ++ ++RP L +E Sbjct: 177 DDQAELFILRLSRNSGV--LGLAGMAFTSQIFFSNAQPNDEGLKNESILLARPLLHFSKE 234 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRV 228 D+ W EDP+N + R R+R + ++ +L A+ +K R Sbjct: 235 DMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTFKSELQAVISACRK---TRA 291 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 V+ LI + +T+ + I +ILN + L++ A + Sbjct: 292 FVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLALV 337 >gi|227522408|ref|ZP_03952457.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290] gi|227090466|gb|EEI25778.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290] Length = 478 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 20/204 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79 ++VAVS G DSM LL L L RS I VDHCLRE +K E ++ CS Sbjct: 33 VVVAVSTGIDSMTLLYLLEH-LDQRSPQII---VAYVDHCLREQSKRETVFIQQYCSDHH 88 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L++ +V + K PQ G+ AAARE RY K AT+++TAH DD ET+ M+ Sbjct: 89 LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLMKL 147 Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R E +G++ T + RP L +++I F +I W ED +N D Sbjct: 148 VRGGQVESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNLDLT 203 Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222 +R R R H + KMK+ Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219 >gi|325684695|gb|EGD26849.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 431 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 9/199 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL L R G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W S P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LE + ++ R + M + + + RP L + D+ ++ ++ + + Sbjct: 126 DLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182 Query: 190 EDPSNTDDRFERVRVRRFV 208 ED +N R R+R+ V Sbjct: 183 EDETNFTGITARNRLRQEV 201 >gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 448 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 13/200 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E RFF SL P ++VAVS G DSM LL L S+LS + V+H LR Sbjct: 13 LERYRFF--SLKQP--LVVAVSTGVDSMTLLHVLGSLLS-----ADQLVVAHVNHHLRAQ 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E +++ C ++ + V W+N PQ G+ AAR+ RY ++ A ++TA Sbjct: 64 SQQEEQFLRQQCQQMGVRLYVDQWENH-PQHGIENAARQERYRFFAKVMHETKAAYLLTA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D ET+ M+ R G+ + + N + RP LR ++ + + Sbjct: 123 HHENDLAETMLMKLLR--TGDATATVGIREARPF-ANGQLLRPLLRVTKKSLVEYARVHQ 179 Query: 186 ISWCEDPSNTDDRFERVRVR 205 + W ED +N +D R RVR Sbjct: 180 LKWYEDATNQEDMTLRNRVR 199 >gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110] gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110] Length = 325 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 22/197 (11%) Query: 19 PAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 PAH+ +AV SGG+DS LL A S + A V H L+ A D R+ + V Sbjct: 14 PAHLPLAVGFSGGADSTALLAACASAWPGQVL------AFHVHHGLQAAADDFERHCAAV 67 Query: 77 CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA----TLIMTAHTFDD 130 C RL + +V V ++++ + AAR ARY + A+ A I+ H DD Sbjct: 68 CERLGVPLAVHRVDARHAQGDSP-EDAARRARYDAFAAMARMDTALGAIESIVLGHHADD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISW 188 Q+ET+ + R G GL G+ + L I RP L DIR++L ++ W Sbjct: 127 QVETLLLALSR-----GAGLPGLAAMPAHVRRNGLDIYRPLLAVPGADIRAWLKSVDLPW 181 Query: 189 CEDPSNTDDRFERVRVR 205 EDP+N D+R+ R R+R Sbjct: 182 IEDPTNEDERYTRNRIR 198 >gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7] gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7] Length = 443 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77 +L+A+SGG DS+ L L + D I++ HC LR++ D+ ++V ++ Sbjct: 21 LLIAISGGLDSVVLTHLLFNAGYD----------ITLAHCNFNLRDSESDQDEQFVRELA 70 Query: 78 SRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R +I V ++ S+ + AARE RY ++ K N I+TAH DDQ+E Sbjct: 71 DRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCKDHNYDFILTAHHLDDQIE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ R G GL G+ + LN + RP L RE I + + + W ED S Sbjct: 131 TFFINLNR-----GAGLKGLQG--IPQLNGNVIRPLLPFSREQIMEYAMNSQVLWREDSS 183 Query: 194 NTDDRFERVRVRR 206 N ++++R ++R Sbjct: 184 NRSNKYQRNQLRN 196 >gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a] gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a] Length = 430 Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|319638353|ref|ZP_07993115.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102] gi|317400102|gb|EFV80761.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102] Length = 451 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 92/326 (28%), Positives = 146/326 (44%), Gaps = 40/326 (12%) Query: 19 PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H + V +SGG DS ++ LH + R F + A+ V H L A ++ D Sbjct: 21 PSHTVFEVGLSGGLDS---VVLLHLLDRMREFRRFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL +A V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CQRLNVALRVCRVNVEKHGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + + R G GL GM ++ DLN + I RP L R+++ + Q + + ED S Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPLLAFSRQELAEYAQQWRLPFVEDES 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-----DLRVKVNNAVAMLI---PKYLTVH 245 N D + +R ++R+ L ++ F+ ++R+ + + +Y + Sbjct: 189 NEDSGY----LRNWMRNQALPQWQQRIPNFEQQICANIRLLQEDLQLLDELAESEYQRIS 244 Query: 246 MRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 I +IS Q + LL+Y LR SLP Y S+ L++ ++ + Sbjct: 245 PDGIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETAEQAQL 298 Query: 303 SI--GRVVIDRRANFLWITRAVRNLP 326 S+ G +V R F+W + LP Sbjct: 299 SLPNGELVAYRDQLFIWQENEFQRLP 324 >gi|313123084|ref|YP_004033343.1| tRNA(ile)-lysidine synthetase, mesj [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279647|gb|ADQ60366.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 431 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 9/199 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL L R G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W S P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYEGVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LE + ++ R + M + + + RP L + D+ ++ ++ + + Sbjct: 126 DLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182 Query: 190 EDPSNTDDRFERVRVRRFV 208 ED +N R R+R+ V Sbjct: 183 EDETNFTGITARNRLRQEV 201 >gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax ferrireducens T118] gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118] Length = 320 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 28/218 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG+DS LL+A +++ G++ AI + H ++ D R+ VC RL Sbjct: 18 LAVAFSGGADSTALLLAC----AEKWPGQVH--AIHIHHGVQAAGDDFERHCQAVCVRLG 71 Query: 82 IAHSVVSWKNSKPQTGLMA--AAREARY------ALISEHAKTINATLIMTAHTFDDQLE 133 + VV +++ +G AAR ARY AL+ E+A+ ++ + H DDQ+E Sbjct: 72 LP-LVVKRVDARHASGQSPEDAARRARYKAFEAVALV-EYAQVAIKSIALAQHA-DDQVE 128 Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 T+ + R G GL GM L RP L DIR +L+ R ++W ED Sbjct: 129 TLLLALSR-----GAGLPGMSAMPASWRRAGLTYHRPLLGVAASDIRRWLVGRGVAWIED 183 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 P+N D++F R R+R + L AL +F+D V+ Sbjct: 184 PTNVDEQFTRNRIRARL----LPALDATFPQFRDTFVR 217 >gi|282850013|ref|ZP_06259395.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745] gi|282580202|gb|EFB85603.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745] Length = 332 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 14/198 (7%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++P + ILVA SGG DSM LL L + + R + VDHC+R +KDEV ++ Sbjct: 19 IFPENCRILVACSGGPDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRLESKDEVLWLR 77 Query: 75 DVCSRLRIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + K S+ Q R+ RY ++ A++ I AH DD Sbjct: 78 NQADVLGLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTGIAQSEGYDYIAVAHHKDD 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 Q E++ R G GL+G+ + D + + RP L +E++ +L +++IS+ Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYIVPVVRPLLDVTKEELLLYLKEKDISY 192 Query: 189 CEDPSNTDDRFERVRVRR 206 C D +N D R++R R+R Sbjct: 193 CIDSTNEDVRYQRNRIRH 210 >gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d] gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d] Length = 430 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|27469192|ref|NP_765829.1| hypothetical protein SE2274 [Staphylococcus epidermidis ATCC 12228] gi|57866063|ref|YP_187744.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A] gi|242241594|ref|ZP_04796039.1| cell cycle control ATP-binding protein MesJ [Staphylococcus epidermidis W23144] gi|293366151|ref|ZP_06612838.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W2(grey)] gi|61217168|sp|Q5HRP5|TILS_STAEQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217351|sp|Q8CQV3|TILS_STAES RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27316741|gb|AAO05916.1|AE016751_211 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57636721|gb|AAW53509.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A] gi|242234975|gb|EES37286.1| cell cycle control ATP-binding protein MesJ [Staphylococcus epidermidis W23144] gi|291319745|gb|EFE60104.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W2(grey)] Length = 432 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 49/274 (17%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C + Sbjct: 12 AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68 Query: 80 LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I +V+ NS Q AR+ RY + + A +++TAH DDQ Sbjct: 69 HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123 Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 ET+ RS R+ +G++ Y + RP L ++ +I ++ I Sbjct: 124 FETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175 Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230 + ED SN D ++ R +R+ + ++ H L LK+K + D+ ++ + Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 NN V+ KYLT S A ++ +NI S ++ Sbjct: 235 NNEVSK--SKYLTYSF-SRTAFNELNVNIKSVVM 265 >gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D] gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D] Length = 430 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1] gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1] Length = 460 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 19/196 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DS+ LL H + S+R I+ A VDH LR + +++++ +V C + Sbjct: 21 VVVGVSGGPDSLALL---HFLWSERERYDIQLVAAHVDHMLRGKQSEEDMHFVKHFCEQ- 76 Query: 81 RIAHSVVSWKN--------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 HS++ + G+ AAR+ RY + +A + AH DDQ+ Sbjct: 77 ---HSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHARCVALAHHGDDQI 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R + G +G+ + +I RPFL R I + Q + DP Sbjct: 134 ETVLMRLVRGSTTR--GYAGIPVKRPFGSG-YIVRPFLCIDRRQIEQYCQQNGLHARHDP 190 Query: 193 SNTDDRFERVRVRRFV 208 SN D + R R R V Sbjct: 191 SNEKDDYTRNRFRHAV 206 >gi|300742497|ref|ZP_07072518.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567] gi|300381682|gb|EFJ78244.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567] Length = 469 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 11/190 (5%) Query: 22 ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVA SGG DS+ L IA H + RS ++ A+ VDH L+ + + ++ + L Sbjct: 128 VLVACSGGPDSLALACIAAH--FARRS--DVRVGAVVVDHGLQADSAEVAASTAETLTNL 183 Query: 81 RIAHSVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H V++ + PQ G AAR ARY A ++ HT DDQ ETV + Sbjct: 184 GL-HPVLTERVQVPQGSMGPEMAARTARYGAFERAVHNTGARAVLLGHTLDDQAETVLLG 242 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+GM + + ++ RPFL RR D+ + ++ DP+NTD Sbjct: 243 LGRGSGTRS--LAGMPPVRIENGVTYL-RPFLALRRADMLNICEAEGVAPWNDPTNTDQT 299 Query: 199 FERVRVRRFV 208 R R+R + Sbjct: 300 LMRARIRHTI 309 >gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] Length = 664 Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 36/271 (13%) Query: 19 PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKD 68 P H I + VSGG DSM L + L V ++S G I AI VDH LR+ +KD Sbjct: 82 PHHRIALGVSGGPDSMALCVLTAKWKTEGLSCV--NKSDGFIDGLVAIVVDHGLRQESKD 139 Query: 69 EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125 E V S++ I + S W + +P+ G L AARE RY +IS +++ A Sbjct: 140 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYQMISNVCFRHQIEVLLIA 199 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174 H DDQ E +R R G+ + I + + ++ + RP L + Sbjct: 200 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHIKNRSILLVRPLLDLWK 259 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLR 227 ED+ W EDP+N F R R+R + ++ +LHA+ + ++ R Sbjct: 260 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLHSGNFKSELHAVISECRR---TR 316 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 V+ LI + +TV + + + LN Sbjct: 317 SFVDKFCTDLISQTVTVTDKGYAILDLERLN 347 >gi|167465338|ref|ZP_02330427.1| tRNA(Ile)-lysidine synthetase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 424 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 23/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL L+ + ++ + K A V+H R E + +E +YV S L Sbjct: 23 VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79 Query: 81 RIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V + + PQ AARE RY + + A NA I AH DDQ Sbjct: 80 GIPCEVGVIDVPAYIRETSLNPQV----AAREKRYEFLHKIANVYNADKIALAHHADDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR R G GLSG+ + + N+ + RP LR + ++ S+ + + + Sbjct: 136 ETVLMRIVR-----GTGLSGLTGIPIKRKEKNVELVRPMLRIYKNEVISYCHEHQLHFFR 190 Query: 191 DPSNTDDRFERVRVR 205 D SN ++ R +VR Sbjct: 191 DSSNDSRKYFRNQVR 205 >gi|308235339|ref|ZP_07666076.1| tRNA(Ile)-lysidine synthase [Gardnerella vaginalis ATCC 14018] gi|311114324|ref|YP_003985545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Gardnerella vaginalis ATCC 14019] gi|310945818|gb|ADP38522.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Gardnerella vaginalis ATCC 14019] Length = 363 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 9/178 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + R I+ +AI V+H ++E + + ++ + L Sbjct: 45 VLVACSGGRDSLALTALAVKVCASRG---IRCAAIIVNHNMQEGSAKVAQNAANTVASLG 101 Query: 82 IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + S++ S + + G +AAR+ARYA I AK + A+ ++ AHT DDQ ETV + Sbjct: 102 VDKSLIFVESVQVKDGEKGEESAARDARYAAIINAAKDLGASAVLLAHTADDQAETVII- 160 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 RD A G+ I + +RP + RR + + I W +DP+N D Sbjct: 161 GLRDSA--GLEAVAGMKNITVRSGIRFARPLINLRRLETTNICKDLGIEWWDDPTNGD 216 >gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners DSM 13335] gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1] gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners DSM 13335] Length = 430 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + M L + WI+ RP L +E++ + +R +++ D +N + Sbjct: 137 SGNVQEMN-------SLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189 Query: 197 DRFERVRVRRFV 208 + R R+R FV Sbjct: 190 NETLRNRLRHFV 201 >gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN] gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN] Length = 320 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 20/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS LL+A + + G+++ AI V H L+ A D R+ D+C L+ Sbjct: 18 LAVGLSGGADSTALLLAC----ARKWPGQVQ--AIHVHHGLQAAADDFERHCQDLCKCLQ 71 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETV 135 + +V V +++ P AAR ARY A++ H + I A DDQ+ET+ Sbjct: 72 VPLTVQRVDARHA-PGESPEDAARRARYKAFEAVVQAHPAPFAISSIALAQHADDQVETL 130 Query: 136 YMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R G G++G+ ++ RP LR +R +L + W EDP+ Sbjct: 131 LLALSR-----GAGVAGLAAMPARWERGGVFWHRPLLRVAGAHVRDWLRAQGQGWVEDPT 185 Query: 194 NTDDRFERVRVR 205 N D+RF R R+R Sbjct: 186 NQDERFTRNRIR 197 >gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70] gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70] Length = 462 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 87/192 (45%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DS+ LL H S R I A VDH R + +++++ +V C+ Sbjct: 21 VIVGVSGGPDSLALL---HFFWSIRQEWNITLIAAHVDHMFRGKQSEEDMNFVKHFCAAR 77 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + + G+ AAR+ RY E K A + H DDQ+ET+ Sbjct: 78 GIICEAVQMDVPAFQRESKLGVQEAARQCRYRFFGELMKKYKAHYLALGHHGDDQVETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K G +G+ + +I RPFL R DI ++ Q I+ D SN Sbjct: 138 MRLVRGSTSK--GYAGIPAKRPF-YGGYIIRPFLAISRADIDAYCRQHQITPRHDASNDK 194 Query: 197 DRFERVRVRRFV 208 D + R R R V Sbjct: 195 DDYTRNRFRHHV 206 >gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D] gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D] Length = 418 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ C + + Sbjct: 8 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 64 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 65 LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 178 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 179 ETLRNRLRHFV 189 >gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Desmospora sp. 8437] Length = 477 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 92/192 (47%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LV VSGG DS LL AL + + K +A+ V+H LR E ++ + +YV C Sbjct: 23 VLVGVSGGPDSTALLHALSRIAPTHGW---KVAAVHVNHGLRGENSRGDEKYVRTCCEHW 79 Query: 81 RIAHSV--VSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V V + Q G A AR RYA A+ + A + AH DDQ+ET+ Sbjct: 80 QIPCHVEQVGVRQVLAQKGGNKQAVARSLRYAAFLRVARRVGAECLALAHQADDQVETLL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R GL+G+ T + L I RP L R D+ ++ + ++ D SN D Sbjct: 140 MRLIRGTGP--AGLAGIPATREWR-GLRIVRPLLEVWRSDVEAYCTRYGLTPRLDESNRD 196 Query: 197 DRFERVRVRRFV 208 R R R+R + Sbjct: 197 PRHTRNRIRHHL 208 >gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624] gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624] Length = 466 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 17/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL ++ + K AI +DH L+E + + + V+ + L I Sbjct: 34 LIGCSGGMDSMLLLHLMNQIFPQ------KIRAIYIDHQLQEQSAEWGKLVASQATSLNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ + K L A AR+ARY +H + +++ AH DQ ET +R Sbjct: 88 SYIIQ--KVQISDGNLEAQARQARYQAYQQHLQ--QNEILLLAHHQQDQAETAILR---- 139 Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ I Y N+ I RPFL RE I S+ Q + + +DP N D ++ Sbjct: 140 -LLSGTGVDGLAAMQAIDYRENMTIWRPFLDLTREQIASWAAQLEVKYIDDPMNYDTHYD 198 Query: 201 RVRVRR 206 RV R Sbjct: 199 RVWCRE 204 >gi|264677341|ref|YP_003277247.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2] gi|262207853|gb|ACY31951.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2] Length = 336 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 26/201 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA SGG+DS LL+A H+ R G+++ AI V H L+ A + R+ +C+ Sbjct: 29 PLPLAVAFSGGADSSALLLACHA----RWPGRVR--AIHVHHGLQAAADEFQRHCEQLCA 82 Query: 79 RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAK---------TINATLIMT-AH 126 R IA V + +N + Q+ AAR+ RYA + + A+ ++A M A Sbjct: 83 RHGIALKVCAIDARNVQGQSP-EDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQR 184 DDQ+ET+ + R G G++G+ + L RP L + +R +L R Sbjct: 142 HADDQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLEWFRPLLEVPGQALRDWLRLR 196 Query: 185 NISWCEDPSNTDDRFERVRVR 205 N+SW EDP+N D + R R+R Sbjct: 197 NLSWVEDPTNADPGYTRNRIR 217 >gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp. IMCC9063] gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp. IMCC9063] Length = 346 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 12/207 (5%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V+ + + +SGG DS+ L A + S+++ + + + VDH +R + E + Sbjct: 31 VKKNIGSKSFVACISGGPDSLALA-ACSKIYSEKNHTNVFY--LIVDHNIRANSALEAKR 87 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V ++ +++ K ++ + AR+ RY ++S+ K + ++TAH DDQ+ Sbjct: 88 VQKNLLKISAKAKILTIKKIISRS-IQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQI 146 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWC 189 E Y+R R G GL G+ + + N + I RPFL ++ + + ++ Sbjct: 147 ENFYIRLSR-----GSGLQGLSSMKIAEKNKEKITIVRPFLSSSKKILIQVAKKIFTTFI 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHAL 216 +DPSNT+DRF R R+R+ +++ L Sbjct: 202 KDPSNTNDRFLRSRIRKLKSNLEKEGL 228 >gi|322381177|ref|ZP_08055180.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154753|gb|EFX47024.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 479 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 23/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL L+ + ++ + K A V+H R E + +E +YV S L Sbjct: 23 VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79 Query: 81 RIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V + + PQ AARE RY + + A NA I AH DDQ Sbjct: 80 GIPCEVGVIDVPAYIRETSLNPQV----AAREKRYEFLHKIANVYNADKIALAHHADDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR R G GLSG+ + + N+ + RP LR + ++ S+ + + + Sbjct: 136 ETVLMRIVR-----GTGLSGLTGIPIKRKEKNVELVRPMLRIYKNEVISYCHEHQLHFFR 190 Query: 191 DPSNTDDRFERVRVR 205 D SN ++ R +VR Sbjct: 191 DSSNDSRKYFRNQVR 205 >gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners ATCC 55195] gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners ATCC 55195] Length = 418 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ C + + Sbjct: 8 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 64 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 65 LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 178 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 179 ETLRNRLRHFV 189 >gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d] gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d] Length = 418 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 8 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 64 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 65 LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 178 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 179 ETLRNRLRHFV 189 >gi|329737901|gb|EGG74129.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045] Length = 432 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 49/274 (17%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C + Sbjct: 12 AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68 Query: 80 LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I +V+ NS Q AR+ RY + + A +++TAH DDQ Sbjct: 69 HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123 Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 ET+ RS R+ +G++ Y + RP L ++ +I ++ I Sbjct: 124 FETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175 Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230 + ED SN D ++ R +R+ + ++ H L LK+K + D+ ++ + Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 NN V+ KYLT S A ++ +NI S ++ Sbjct: 235 NNEVSK--NKYLTYSF-SRTAFNELNVNIKSVVM 265 >gi|108758860|ref|YP_632533.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622] gi|108462740|gb|ABF87925.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622] Length = 451 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 11/184 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG+DS LL+ +VL +++ S+DH LR A +E R VS V + R Sbjct: 29 VLLAVSGGADSTALLMG--TVLVAERL-RLRVEVASLDHGLRPEAAEEARQVS-VLAAAR 84 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V P G+ A AREARYA + ++ TAHT DQ ET+ MR R Sbjct: 85 GLPCHVQALRLHPGVGIEARAREARYAALEALRLERGLDVVATAHTATDQAETLLMRLAR 144 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 A +G +++ + RP L C RE++ +FL ++ +++ DP NTD R Sbjct: 145 GTALRGA-------VGIHEARPGLVRPLLSCTREEVVAFLAEQGVAYVTDPMNTDPVHFR 197 Query: 202 VRVR 205 RVR Sbjct: 198 TRVR 201 >gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c] gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c] Length = 430 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|227894505|ref|ZP_04012310.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM 16047] gi|227863664|gb|EEJ71085.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM 16047] Length = 425 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA S G DSM LL L + +F I A DH LR ++ E + C + Sbjct: 19 LLVASSAGPDSMALLDMLWGMQKKCNFAVI---AAHFDHQLRVDSEKETEILKKYCRQKE 75 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I W K+ +PQ G+ AAAR ARYA ++ A NA ++TAH DD LE + ++ Sbjct: 76 IPFFSTKWLKSQQPQRGVEAAARHARYAFLTMVANEQNADYLLTAHHGDDLLENILLKFI 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + M S ++ + L RP L ++++ + IS+ D +N +D Sbjct: 136 RSGNPEEMN-SLQAIGKMHGIKLL--RPLLAYSKQELLDYDRTHEISFIIDSTNEEDETM 192 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 193 RNRLRHHV 200 >gi|317047001|ref|YP_004114649.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b] gi|316948618|gb|ADU68093.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b] Length = 433 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 25/349 (7%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L+ P A ++A SGG DS LL L V + +++ A+ V H L A + Sbjct: 8 ALLTPDARCVLAFSGGLDSTVLLHQL--VCWRQQHPQMQLRALHVHHGLSPNADSWAAHC 65 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C + I V+ + + G+ AAAR+ARY + +H + ++TA DDQ E Sbjct: 66 QHLCQQWHIPCEVLRVRVDGREQGIEAAARDARYQALLQHLQP--GEHLLTAQHLDDQCE 123 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +R G L+ M + N + RP L R+ + S+ Q +SW ED S Sbjct: 124 TLLLALKRGSGPAG--LAAMPSQRILGENTHL-RPLLALSRQQLESWAAQHQLSWIEDES 180 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D R++R +R+ V + L A + + L+ + L + + + Sbjct: 181 NADCRYDRNFLRQQVLPL-LQARWPHFSAAAARSAALCGEQEQLLDELLAEQL-AQLTDK 238 Query: 254 QDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306 Q LN L R A I G ++P ++ R+ ++ + + C+ G Sbjct: 239 QGRLNFTPLLAMQEARRHALLRRWIAGQGGTMPSRDALLRITREVMHSREDAQPCLHFGA 298 Query: 307 VVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 + R R W LP+ + + W R Q L +SL ++ Sbjct: 299 FELRRYRQQLYW-------LPSQPSLSQHSLTWHDRSQPLPLPESLGEL 340 >gi|269138115|ref|YP_003294815.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202] gi|267983775|gb|ACY83604.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202] gi|304558160|gb|ADM40824.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda FL6-60] Length = 439 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 6/192 (3%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 R L H+LVA SGG DS LL AL + + R ++ + V H L A Sbjct: 8 RHIADRLAGRQHLLVAFSGGLDSTVLLHALVQLRASR-LPHLRLRVVHVHHGLSHFADQW 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + VC ++ V+ + + + AAAR+ARY I+E + ++TA D Sbjct: 67 VDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYRGIAELIDSHET--LLTAQHLD 124 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET + +R GLS M ++ + RP L RE + ++ ++SW Sbjct: 125 DQCETFLLALKR--GSGPTGLSAMAQSMPF-FACEQLRPLLDISREQLTAYAQAHHLSWV 181 Query: 190 EDPSNTDDRFER 201 ED SNTD RF+R Sbjct: 182 EDDSNTDARFDR 193 >gi|154499603|ref|ZP_02037641.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC 29799] gi|150271681|gb|EDM98925.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC 29799] Length = 458 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 31/208 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYVSDV 76 +L AVSGG+DS+ LL H + R A +HCLR E+ +DE +V+ Sbjct: 21 VLCAVSGGADSVYLL---HRLWLLRDILGFNLIAAHYNHCLRGEESDRDEAFVRDFVAKW 77 Query: 77 CSRLR----------------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 C R + V+ + + GL AR+ RYA + + A+ + Sbjct: 78 CGPQRFDGPEGEHTLPAVELVVGRGDVAAEAERQGRGLEETARDMRYAFLRDTAQRLGCD 137 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I TAHT DD ET+ + + +G GL GM +L RP L R ++ + Sbjct: 138 RIATAHTADDNAETLLL-----HLIRGTGLQGMAGIAPRRGDL--VRPMLTTTRREVEEY 190 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 L +I ED SN+D RF R R+RR V Sbjct: 191 LELYSIPHVEDSSNSDQRFTRNRIRRQV 218 >gi|220904230|ref|YP_002479542.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868529|gb|ACL48864.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 377 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 14/206 (6%) Query: 6 IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E RF + L P + +++A+SGG+DS L A+ S+L R +K +S++H LR Sbjct: 19 LEVERFCLHHLALPRGSSLVLALSGGADSTAL-AAILSLLVPRLH--LKLRGLSINHGLR 75 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 AK + + CS L + +V V ++ + G A R RYAL+ E +T A Sbjct: 76 PEAKADAAHAQKTCSILGMPCAVREADVQGLAARCRMGEEEAGRTLRYALLEEERQTSGA 135 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H +D E + +R R G G + D + RP L C ++ Sbjct: 136 HFIALGHHREDLSEDILLRLVR-----GTGWPALGGMPARDDKRRLLRPLLHCAPSALKD 190 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 L + WCED SN + R R+R Sbjct: 191 LLRHCGLDWCEDASNQSTIYRRNRLR 216 >gi|81429211|ref|YP_396212.1| ATPase [Lactobacillus sakei subsp. sakei 23K] gi|78610854|emb|CAI55906.1| Putative ATPase of the PP-loop superfamily, cell cycle protein [Lactobacillus sakei subsp. sakei 23K] Length = 459 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 87/192 (45%), Gaps = 15/192 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VA S G DSM LL L + + K + V+H LR + E Y+ C Sbjct: 20 AKVIVATSTGVDSMVLLTLLQRLPTAL---KPQLIVAHVNHELRTESVAEEAYLRQFCLE 76 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM- 137 ++ V W PQTG+ AAARE RY A ++TAH DDQLET+ M Sbjct: 77 NDLSLQVAHWPLQQHPQTGIEAAAREFRYQFFEHLMTAEKADYLVTAHHGDDQLETLMMK 136 Query: 138 --RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 RS + +G+ D L RP L ++D+R + L NI+ ED +N Sbjct: 137 FIRSGELHEMRGIQSQRPFADGTLI-------RPLLPFAKQDLRDYALANNITSFEDQTN 189 Query: 195 TDDRFERVRVRR 206 + R RVR Sbjct: 190 YETTVLRNRVRH 201 >gi|147676532|ref|YP_001210747.1| ATPase [Pelotomaculum thermopropionicum SI] gi|146272629|dbj|BAF58378.1| predicted ATPase [Pelotomaculum thermopropionicum SI] Length = 473 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 +LVAVSGG DS+ LL AL+ + + +I ++H R + E +V+D+ R Sbjct: 23 VLVAVSGGPDSVALLHALYLLKEEL---EISLHVAHLNHMFRGAESEAEALFVADMARRY 79 Query: 81 RIAHSVVSWK--NSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V + + Q+GL AAARE R+ SE A A+ + AH DDQ ET+ Sbjct: 80 GLPATVEARDVPAYQKQSGLSAQAAAREVRFRFFSEAAGKAGASRVALAHHADDQAETIL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G++G+ +I RP L RR +I + + + +C D SN Sbjct: 140 INFLR-----GAGITGLKGISPVREGFYI-RPLLTVRRAEIERYCKEMKLPYCRDSSNLK 193 Query: 197 DRFERVRVR 205 + R RVR Sbjct: 194 AVYTRNRVR 202 >gi|299533879|ref|ZP_07047246.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44] gi|298718163|gb|EFI59153.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44] Length = 336 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 26/201 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA SGG+DS LL+A H+ R G+++ AI V H L+ A + R+ +C+ Sbjct: 29 PLPLAVAFSGGADSSALLLACHA----RWPGRVR--AIHVHHGLQAAADEFQRHCEQLCA 82 Query: 79 RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAK---------TINATLIMT-AH 126 R IA V + +N + Q+ AAR+ RYA + + A+ ++A M A Sbjct: 83 RHGIALKVCAIDARNVQGQSP-EDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQR 184 DDQ+ET+ + R G G++G+ + L RP L + +R +L R Sbjct: 142 HADDQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLEWFRPLLEVPGQVLRDWLRLR 196 Query: 185 NISWCEDPSNTDDRFERVRVR 205 N+SW EDP+N D + R R+R Sbjct: 197 NLSWVEDPTNADPGYTRNRIR 217 >gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601] gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601] Length = 646 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG DS+ LL H ++ R F +A+ V+H LR + DE V D C L Sbjct: 24 ILVAVSGGPDSLALL---HFIV--RFFPLQNIAAVHVNHQLRAESLDEETLVHDSCQTLG 78 Query: 82 I---AHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++ V ++ + G+ AAR RY E + ++TAH DDQ+ET+ M Sbjct: 79 VDLFSRTIDVKAIAAERKKGIEEAARYVRYQCFEEVMQEAGIDQVVTAHHADDQVETIMM 138 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G SG+ I RPFL + DI ++ +++I + D +N + Sbjct: 139 RLVR--GSFSSGWSGIAPVRKLGAGQVI-RPFLTASKSDILAYCQRQDIQFALDDTNEET 195 Query: 198 RFERVRVRRFV 208 F R R+R+ V Sbjct: 196 IFTRNRLRKKV 206 >gi|167759635|ref|ZP_02431762.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704] gi|167662761|gb|EDS06891.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704] Length = 449 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++V VSGG+DS+ LL L + + G + A+ V H LRE TA + YV VC L Sbjct: 21 VIVGVSGGADSICLLFML--IQLKKEMG-LSVEAVHVHHGLREKTADADAVYVKKVCKEL 77 Query: 81 ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R+ + V + A R R + E + T I AH +D ET+ Sbjct: 78 GIGLRLYYEDVKSFALHNKMSEEEAGRYVRRRIFKEVLQEAGGTKIALAHHQNDNAETLL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + KGMG D + RP L +RE+I S+L+ R IS+C D +N + Sbjct: 138 WNLCRGCSLKGMGGIAPVDGVFI-------RPLLCLKREEIESYLVNRGISYCTDETNLE 190 Query: 197 DRFERVRVRRFV 208 D R R+R V Sbjct: 191 DGHTRNRIRNHV 202 >gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1] gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1] Length = 430 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190 Query: 198 RFERVRVRRFV 208 R R+R FV Sbjct: 191 ETLRNRLRHFV 201 >gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum centenum SW] gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum centenum SW] Length = 453 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 6/185 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG DS+ L++ + R + A++VDH LR + E V + Sbjct: 33 LAVGVSGGRDSLALVLLADAWARARGGSVL---ALTVDHALRPESAAEAAQVGAWMAARG 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H+V+ W+ KP G+ AAR ARYAL+ + A ++ H +DQ ETV +R+ R Sbjct: 90 IRHAVLRWEGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQAETVLLRAAR 149 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL+GM + L + RP L R + + W +DPSN DRF R Sbjct: 150 SSGPD--GLAGMA-AVRELAGLRLLRPLLDIPRVRLAATCEALGQPWLDDPSNLSDRFAR 206 Query: 202 VRVRR 206 R+RR Sbjct: 207 GRLRR 211 >gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4] gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4] Length = 471 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 15/195 (7%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +++P ++V VSGG DS+ LL L+ + D+ ++ + H LR A +E VS Sbjct: 16 MLFPGDKVVVGVSGGPDSVALLDLLYRLREDK---ELSLYVAHLHHGLRAEADEEAAMVS 72 Query: 75 DVCSRLRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ R + + V K Q L AARE RY + E A + A I H DD Sbjct: 73 ELARRYGLPFFLDRVDVKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIALGHQADD 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV + R G GLSG+ + + RP LR RR +I ++ R +S C Sbjct: 133 QAETVLLHLLR-----GTGLSGLRG--IPPVRGPFIRPLLRVRRAEIEAYCQWRGLSPCL 185 Query: 191 DPSNTDDRFERVRVR 205 D SN + R R+R Sbjct: 186 DLSNWSLEYTRNRIR 200 >gi|34541632|ref|NP_906111.1| hypothetical protein PG2046 [Porphyromonas gingivalis W83] gi|61216584|sp|Q7MTC4|TILS_PORGI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34397950|gb|AAQ67010.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 454 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 90/193 (46%), Gaps = 26/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77 +LVA+SGG+DS+ LL L R G +A HC LR DE +V +C Sbjct: 26 VLVALSGGADSVALLCVL------RELGYETVAA----HCNFHLRGVESDEDAAFVERLC 75 Query: 78 SRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L RI V + + + AARE RY + K + + AH DD Sbjct: 76 RDLDVPLHRIDFDTVRYARER-SISIEMAARELRYEWFGQLRKELAIEYVAVAHHADDNA 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + R G G+SG+C + Y N I RP L R++I ++LL + I++ D Sbjct: 135 ETMVLNLCR-----GTGISGLC-GMPYKRNDGIVRPLLDATRDEIEAYLLDQKITYRTDS 188 Query: 193 SNTDDRFERVRVR 205 SN D RF R VR Sbjct: 189 SNEDTRFRRNLVR 201 >gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 485 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 12/207 (5%) Query: 7 ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR F R L P I+VAVSGG DS LL + + D++ G ++ + H LR Sbjct: 11 EQVRRFGRQEQLWLPGDVIVVAVSGGVDSTVLLHIMKEIAGDKALG-LQLICAHLHHGLR 69 Query: 64 -ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + A + +V ++ RL I ++ V + L AARE RY + + A+ Sbjct: 70 GDEADRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYG 129 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A+ I AH DDQ ETV MR R GL+GM + N+ + RP LR + D+ Sbjct: 130 ASSIALAHHADDQAETVLMRLLRGSGPS--GLAGMRPK-RREKNVELIRPLLRIYKTDLL 186 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 + +++ ED SN D R +R Sbjct: 187 QACRESGLAYVEDSSNLDKEMTRNSIR 213 >gi|227509310|ref|ZP_03939359.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191240|gb|EEI71307.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 478 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 20/204 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79 ++VAVS G DSM LL L + D+ +I + VDHCLRE +K E ++ CS Sbjct: 33 VVVAVSTGIDSMTLLYLLEHL--DQCSPQIIVAY--VDHCLREQSKRETVFIQQYCSDHH 88 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L++ +V + K PQ G+ AAARE RY K AT+++TAH DD ET+ M+ Sbjct: 89 LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLMKL 147 Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R E +G++ T + RP L +++I F +I W ED +N D Sbjct: 148 VRGGQIESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNRDLT 203 Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222 +R R R H + KMK+ Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219 >gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 463 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 17/207 (8%) Query: 6 IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR F+ +L+ P ++V VSGG DS+ LL LH + + F A ++H L Sbjct: 8 LRKVRQFIMQHNLISPGELVVVGVSGGPDSVALLHLLHLLGKEEGF---SIHAAHLNHGL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R A++E +V ++ L + +V V + + + A R+ARYA A+ + Sbjct: 65 RPEAEEEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFIRVAEELK 124 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A + TAH DQ ETV M R KG+G IL RPFL R DI Sbjct: 125 ADKVATAHHMGDQAETVLMHLLRGSGLKGLGGMSPRRGILI-------RPFLTVTRTDIM 177 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 S+L + + +C D SN D + R R+R Sbjct: 178 SYLEENRLDYCLDASNYDWDYLRNRIR 204 >gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus casseliflavus ATCC 12755] gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus casseliflavus ATCC 12755] Length = 467 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 5/186 (2%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVS G DSM LL + + ++ F V+H LR + +E ++ C I Sbjct: 23 LLAVSTGVDSMVLLQVFCQLFPEMQKEQV-FGVAHVNHQLRPASAEEAAFLRQYCQERGI 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 W+N P+TG+ A+AR+ RY ++ +++TAH DDQ+ET+ M+ R+ Sbjct: 82 PFYERCWENP-PETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDDQVETMLMKMMRE 140 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + G GM + + + RP L + I + + I + ED SN + + R Sbjct: 141 GRLQSAG--GMQQQQPFHAGILL-RPLLSVSKTAIYDYAQVQQIPYFEDESNHEPLYLRN 197 Query: 203 RVRRFV 208 R+R+ V Sbjct: 198 RLRQQV 203 >gi|116628949|ref|YP_814121.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC 33323] gi|238853548|ref|ZP_04643920.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4] gi|311111243|ref|ZP_07712640.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22] gi|122274053|sp|Q046D9|TILS_LACGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|116094531|gb|ABJ59683.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC 33323] gi|238833844|gb|EEQ26109.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4] gi|311066397|gb|EFQ46737.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22] Length = 431 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 15/208 (7%) Query: 7 ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E FF ++ + L+A SGG DS+ L L + L + S I +DHCLR+ Sbjct: 3 EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPNPSKQLI---VAHLDHCLRK 59 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 + E + + + +I SW + PQTG+ A ARE RYA ++ K ++ Sbjct: 60 DSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKKYQVDYLL 119 Query: 124 TAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 TAH DD +E + ++ R D AE + + G D+ + + RP ++ ++ + + Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNLDS------MRLLRPLIKYSKDQLLEY 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + + ED +N +D R R+R +V Sbjct: 174 DKRNGLDYIEDETNFEDDTLRNRLRHYV 201 >gi|284043133|ref|YP_003393473.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684] gi|283947354|gb|ADB50098.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684] Length = 455 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V +SGG DS+ LL ++ R G SA+ V++ LR+ A D+ R+ + +C RL Sbjct: 22 VVVLLSGGRDSVCLLD-----VAVRIAGAPAVSAVHVNYGLRDDADDDERHCAQLCERLG 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140 +A +V L A AR+ RYA ++ A T+ I T HT DQ+ET+ R Sbjct: 77 VALAVERPSRPAGSGNLQAWARDVRYAAAAQRALTLGPGAAIATGHTASDQVETILYRLA 136 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 + + L GM + + RP L RE+ ++ R + W +D +N + ++ Sbjct: 137 SSPSRR--ALLGM-----RPRDGRLVRPLLGLTREETTAYCEARGLPWRDDATNEEGKYA 189 Query: 201 RVRVR 205 R R+R Sbjct: 190 RNRLR 194 >gi|303228874|ref|ZP_07315687.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a] gi|302516494|gb|EFL58423.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a] Length = 320 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 16/199 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + A ILVA SGG DSM LL L V R + ++DH +R + E++ V+ C Sbjct: 14 HEARILVACSGGPDSMVLLHVLQYVKVHRK-ARWTIGVTTMDHSIRRESLSELQMVASYC 72 Query: 78 SRLRIAHSVVSWKNSKP--------QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +++ W K + L R RY +E A + I+TAH D Sbjct: 73 NK----NNLPFWGVKKDIPTIAGERKESLETVGRCERYKWFNELAAREHYDYIVTAHHKD 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R KG ++GM I +D + I RP L +++I + ++I +C Sbjct: 129 DQGETILAHILRGSGIKG--ITGM-SVISHDYTVPIVRPLLSVTKDEILEYARLQDIEYC 185 Query: 190 EDPSNTDDRFERVRVRRFV 208 D SN D ++ R R+R V Sbjct: 186 VDASNEDVKYNRNRIRHEV 204 >gi|56412509|ref|YP_149584.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|61216419|sp|Q5PD76|TILS_SALPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56126766|gb|AAV76272.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 430 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERMTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255 R F+R L AL L +++ V + + L+ + L + I ++ Sbjct: 188 ---RNFLR---LRALPLLQRRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240 Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 L + +L +R +A + +P ++ER+ + + C+ G Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHE 300 Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332 I R ++ WI T +++P Sbjct: 301 IRRYQSQLWWIKSVAGQHETTVVWP 325 >gi|227512322|ref|ZP_03942371.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577] gi|227084497|gb|EEI19809.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577] Length = 478 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 98/204 (48%), Gaps = 20/204 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79 ++VAVS G DSM LL L L RS I VDHCLRE +K E ++ CS Sbjct: 33 VVVAVSTGIDSMTLLYLLEH-LDQRSPQII---VAYVDHCLREQSKRETVFIQQYCSDHH 88 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L++ +V + K PQ G+ AAARE RY K T+++TAH DD ET+ M+ Sbjct: 89 LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQVTVLLTAHHGDDLAETMLMKL 147 Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R E +G++ T + RP L +++I F +I W ED +N D Sbjct: 148 VRGGQVESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNRDLT 203 Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222 +R R R H + KMK+ Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219 >gi|256829531|ref|YP_003158259.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028] gi|256578707|gb|ACU89843.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028] Length = 334 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 82/188 (43%), Gaps = 12/188 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA S G DS LL + R+ + A H LR + E+ + +VCSRL Sbjct: 34 LVVAYSAGLDSTALLH---LLHLLRAPLNLTLIAAHAHHGLRPESDRELEHAREVCSRLS 90 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 IA H + + GL AR+ARYA + + A I TAH DD E + M Sbjct: 91 IAFQAAHLDIPSLQAASGRGLEECARQARYAFLESVRQEHQADWITTAHHGDDLAEDIVM 150 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G G+ D + RP L + +RSFL + WCED SN Sbjct: 151 RLLR-----GTGWPGLGGMPGVDPKRGLLRPLLDWEKNGLRSFLEETGTGWCEDQSNASP 205 Query: 198 RFERVRVR 205 R RVR Sbjct: 206 DRTRNRVR 213 >gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G] gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G] Length = 430 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A+S G DSM LL + ++ D + + VDHCLR + E ++ C + + Sbjct: 20 IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 77 LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + M L + WI+ RP L +E++ + +R + + D +N + Sbjct: 137 SGNVQEMN-------SLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLVYIVDYTNQE 189 Query: 197 DRFERVRVRRFV 208 + R R+R FV Sbjct: 190 NETLRNRLRHFV 201 >gi|206578043|ref|YP_002240324.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342] gi|206567101|gb|ACI08877.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342] Length = 437 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 109/424 (25%), Positives = 175/424 (41%), Gaps = 50/424 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L VL + A+ V H L A D V + +C + + Sbjct: 19 LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140 + V ++ G+ A AR ARY + T+NA +++TA DDQ ET+ + + Sbjct: 77 VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + + RP L RE +R + L +SW ED SN DD ++ Sbjct: 134 RGSGP--TGLSAMAPSSAF-ADSRLLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R + L + F + + + A L+ + L + S++A L Sbjct: 191 ----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVA-EDGSL 245 Query: 258 NIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310 +I R +A + G Q +P ER+ + + C+ +G + Sbjct: 246 SITPLTSMSPPRRAALLRRWLAGHQAPMPAREVPERLWHEVALAREDASPCLRLGDFTVR 305 Query: 311 R-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R + W V+ LP E W Q L+D L ++ Q + PS Sbjct: 306 RFQQRLYW----VKYLPGQT---ESVQHWPDWRQPLRLADGLGELMLQPGGRLRPPSADE 358 Query: 370 PIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSIS 411 P+ + RA + + GG+ L + P+ R T + P+A A F + Sbjct: 359 PVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAAADDLFVTT 418 Query: 412 FGKV 415 G+V Sbjct: 419 EGEV 422 >gi|319794157|ref|YP_004155797.1| tRNA(ile)-lysidine synthetase [Variovorax paradoxus EPS] gi|315596620|gb|ADU37686.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus EPS] Length = 323 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 88/193 (45%), Gaps = 22/193 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V SGG+DS LL A S R G++ A V H L+ A D R+ +VC+RL Sbjct: 19 LAVGFSGGADSNALLAACAS----RWPGQV--VAFHVHHGLQAAADDFERHCGEVCARLG 72 Query: 82 IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQLET 134 + H V + P AR ARY A+ + I H DDQ+ET Sbjct: 73 VPLVVHRVDA--RHAPGDSPEDTARRARYEAFGVMARMDSTRPFIQSIALGHHADDQVET 130 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + R G GL G+ + L I RP L DIR++L R++ W EDP Sbjct: 131 LLLALSR-----GAGLPGLAAMPAHAERNGLNIYRPLLTVPAADIRAWLAARDLPWIEDP 185 Query: 193 SNTDDRFERVRVR 205 SN D R+ R R+R Sbjct: 186 SNGDARYTRNRIR 198 >gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6] gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6] Length = 355 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 81/196 (41%), Gaps = 16/196 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V P H++VA SGG+DS L + L R G + +DH LR + +E Sbjct: 46 VSPHHVIVAFSGGADSTALAVIL------RCLG-VSLVLAHLDHRLRPESGEEAESARRF 98 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 RL + V V GL A R ARYA + A ++T H DD Sbjct: 99 AERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEWVVTGHHLDDLS 158 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E V MR R G G G+ D + RP L R ++ +FL + W ED Sbjct: 159 EDVLMRLVR-----GSGWPGLGGMKAVDPARRLLRPLLGTPRAELEAFLRSLGVDWIEDA 213 Query: 193 SNTDDRFERVRVRRFV 208 SN D F R R+R V Sbjct: 214 SNRSDAFRRNRMRNHV 229 >gi|212710380|ref|ZP_03318508.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM 30120] gi|212686962|gb|EEB46490.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM 30120] Length = 458 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 37/324 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV SGG DS LL AL+ + ++ AI V H L A + + +C + Sbjct: 22 ILVGFSGGIDSTVLLHALYQI-KISELPSLEIRAIHVHHGLNIQADKWEAHCASLCQKWD 80 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I H V N G+ AAAR RY E + + +I+TA DDQ ETV + Sbjct: 81 IPFICRHVTVEGSNK----GIEAAARAERYQAYRE--ELLEDEIIVTAQHLDDQAETVML 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +R GLS M +++ + N + RP L R + + ++ + W ED SN Sbjct: 135 ALKR--GSGPTGLSAMPESLAFQAKCGNTVLLRPLLTISRHALEHYRAEQQLPWVEDDSN 192 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRS 248 DDR++ R F+R LH + +++ V+ + ++ L+ + L + Sbjct: 193 QDDRYD----RNFLR---LHIMPRLSERWSHFANAVSRSASLCAEQEALLDELLQDSLDE 245 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAI---CG-GQISLPGYRSMERVMLFLKSGKRGCVSI 304 II + L ID + + + +A I G Q+++P + +ER+ + ++ I Sbjct: 246 IIDY-RGGLYIDGLVHCSVAKRNALIRRWIGLHQLAMPPFNQLERIWQEVALARQDAEPI 304 Query: 305 ---GRVVIDRRANFLWITRAVRNL 325 G V I R LW+ + + +L Sbjct: 305 CRLGNVEIRRYQGALWVVKRINSL 328 >gi|172087739|ref|YP_205328.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114] gi|171902329|gb|AAW86440.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114] Length = 456 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 11/197 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V H++VA+SGG DSM LL ++ +++ A+ V+H L A D + Sbjct: 29 VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSLHANDWEVSCASY 85 Query: 77 CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C L I + V+ K S PQ L AR+ARY + ++ ++ +L++T DDQ+ET Sbjct: 86 CKELDIPLYIERVNLKVS-PQESLEEVARKARYHALEKYMQS--NSLLLTGQHQDDQVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ +R GLS M I + RP L R+ I + Q ++W ED SN Sbjct: 143 FFLALKR--GSGPAGLSSMPSIIPLKTG-YKCRPLLFTSRQHITEYAQQHQLTWVEDESN 199 Query: 195 TDDRFERVRVRRFVRDI 211 D RF+R +R + + Sbjct: 200 QDTRFDRNFLRHEITPV 216 >gi|160894589|ref|ZP_02075365.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50] gi|156863900|gb|EDO57331.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50] Length = 485 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 + +V VSGG+DS+ LL L + R ++K A+ V+H +R T D + YV++ C + Sbjct: 25 NCIVGVSGGADSICLLTVLAGL---REKIELKLYAVHVNHMIRGTEADADESYVAEYCKK 81 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLE 133 L I H V + + A R ARY + A T + AH +D E Sbjct: 82 LGIPCDCYHIDVPQLAKEQKLTEEEAGRNARYGAFARAADKYGITDYKVAVAHNKNDVAE 141 Query: 134 TVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 TV + R G G++GM + D I RP L C R +I ++L Q+ I +C D Sbjct: 142 TVLLNMVR-----GTGIAGMAGIPVKRD---RIVRPLLSCTRTEIEAYLEQQGIQYCTDS 193 Query: 193 SNTDDRFERVRVRRFV 208 +N ++ + R ++R V Sbjct: 194 TNLENDYARNKIRNQV 209 >gi|295397830|ref|ZP_06807894.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563] gi|294973927|gb|EFG49690.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563] Length = 484 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 87/189 (46%), Gaps = 8/189 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL H LS +S + FS I ++H LR + E V C I Sbjct: 39 LLAVSGGVDSMVLLDLFHR-LSQKSL--VTFSVIHINHQLRPESTAEQDMVIKFCEDRDI 95 Query: 83 AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +V+W + PQ + AARE RYA+ + ++TAH +DQ ETV MR Sbjct: 96 PIQIVAWDHDDPQNPNRSELAAREFRYAVFKRMMVLTKSPFLVTAHHQNDQAETVLMRLV 155 Query: 141 RDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 K + I D L ++ RP L + D+ + I + ED SN D Sbjct: 156 HGGRLKSIAGIHPYRPIHLDQGLQTGYVLRPLLSVDKADLYEYATAWQIPFSEDASNLDL 215 Query: 198 RFERVRVRR 206 + R R R+ Sbjct: 216 AYTRNRFRQ 224 >gi|291457314|ref|ZP_06596704.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213] gi|291381149|gb|EFE88667.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213] Length = 383 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 7/177 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L V + S G ++ A+ VDH L+ + ++ C Sbjct: 45 VLVACSGGRDSMALAAVCRIVCA--SLG-LRCGAVIVDHGLQSGSDRVATLTAERCRDCG 101 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A V + Q G+ AAAREARY + A+ +NA +++ AHT DDQ ETV + Sbjct: 102 LAPVAVRTASVHVQGEGVEAAAREARYGELCGAARELNAAVVLLAHTLDDQAETVLIGLL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R L+GM + D +++ RP + R + NI + +DP+N DD Sbjct: 162 RSGGVD--ALAGMPQVMHRDGIMFL-RPLIGVSRAETTGICEDLNIHYWDDPTNGDD 215 >gi|288937030|ref|YP_003441089.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22] gi|290512451|ref|ZP_06551817.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55] gi|288891739|gb|ADC60057.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22] gi|289774792|gb|EFD82794.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55] Length = 437 Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 107/423 (25%), Positives = 174/423 (41%), Gaps = 48/423 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L VL + A+ V H L A D V + +C + + Sbjct: 19 LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140 + V ++ G+ A AR ARY + T+NA +++TA DDQ ET+ + + Sbjct: 77 VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + + RP L RE +R + L +SW ED SN DD ++ Sbjct: 134 RGSGP--TGLSAMAPSSAF-ADSRLLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R + L + F + + + A L+ + L + S++A + Sbjct: 191 ----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVAEDGSLA 246 Query: 258 NIDSTLLFYLLRVSAA---ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311 T + R + + G Q +P ER+ + + C+ +G + R Sbjct: 247 ITPLTSMSPPRRAALLRRWLAGQQAPMPAREVPERLWHEVALAREDASPCLRLGDFTVRR 306 Query: 312 -RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 + W V+ LP E W Q L+D L ++ Q + PS P Sbjct: 307 FQQRLYW----VKYLPGQT---ESVQHWPDWRQPLRLADGLGELMLQPGGRLRPPSADEP 359 Query: 371 IIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSISF 412 + + RA + + GG+ L + P+ R T + P+A A F + Sbjct: 360 VTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAAADDLFVTTE 419 Query: 413 GKV 415 G+V Sbjct: 420 GEV 422 >gi|317056314|ref|YP_004104781.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7] gi|315448583|gb|ADU22147.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7] Length = 444 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +L+ +SGG+DS LL+ LH + D A V+HC+R E A + + ++C L Sbjct: 25 LLIGLSGGADSAALLLCLHELGYD-------ICACHVNHCIRGEEADRDQHFCEELCKGL 77 Query: 81 RIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +V ++ + P + AR RY + E INA I TAH DD LET Sbjct: 78 NIDITVKVVDVPAYCRANPVSE-EEGARLLRYKALQE----INADKICTAHNLDDCLETT 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G GL G+ N I RP + C R DI ++L ++ S+ D +N Sbjct: 133 LFNLAR-----GSGLKGIASIPPVREN--IIRPLIECSRADIEAYLFEKGQSFVTDSTNL 185 Query: 196 DDRFERVRVRRFV 208 D + R ++R V Sbjct: 186 LDEYSRNKLRHKV 198 >gi|241896603|ref|ZP_04783899.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella paramesenteroides ATCC 33313] gi|241870084|gb|EER73835.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella paramesenteroides ATCC 33313] Length = 324 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 8/192 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LVAVSGG DS+ LL L + + + + SAI ++H LR A+ E V V + Sbjct: 25 HVLVAVSGGQDSLRLLRWLTAGDLPKDL-QPQVSAIYINHQLRSDAQQEEALVRKVFAHT 83 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 S + W + P + ARE RY ++ A+ + A I+TAH +DQ+ET+ Sbjct: 84 PHLQSATIRKLDW-SEVPTVSVEEKAREKRYGVMFSVAEQVGANSIVTAHHRNDQVETIL 142 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + L+GM + L + RPFL + +++ + + W +D +N D Sbjct: 143 YKLTR--GSRLEQLTGMPEKQTLTNGLKLVRPFLSLSKLELKDLIKEPVQEWIDDYTNDD 200 Query: 197 DRFERVRVRRFV 208 ++ R R+R V Sbjct: 201 QQYARNRLRNAV 212 >gi|307297688|ref|ZP_07577494.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916948|gb|EFN47330.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 463 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 16/186 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRL 80 ILVAVSGG DSM LL L+++ +S KI+ A +++H LRE ++E R + C Sbjct: 24 ILVAVSGGKDSMALLNVLNNL---KSTLKIELFAANLNHGLREEGPQEEARMIEQFCEDR 80 Query: 81 RI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V + +K + +AARE RY + + I A I H DD +E Sbjct: 81 FIDFFHEKRDVREYMRTKKGESIESAAREVRYGFLRDVKSMIGADRIALGHNRDDLVENT 140 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R KG G+ G+ L N + RP L + I ++ +++ ED +N Sbjct: 141 LLR-----LVKGTGMKGVIG--LRPSNGDLIRPLLFSDMQRIIDYVTINKVTFMEDETNA 193 Query: 196 DDRFER 201 +D FER Sbjct: 194 EDGFER 199 >gi|312869847|ref|ZP_07729988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3] gi|311094626|gb|EFQ52929.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3] Length = 457 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 15/208 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 F ++ RFF ++ +++AVS G DSM LL + S+ + + + V+H Sbjct: 8 QFKRHLQRGRFFDKN----DRVVIAVSTGVDSMALLSLVTSLPASL---RPAITVAHVNH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR +++E Y+ C + ++A V W + + PQTG+ AAAR RY +E + Sbjct: 61 ELRRQSQEEEAYLRRYCQKHQLALLVKHWPRANHPQTGIEAAARRFRYQFFAEVMAARES 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDI 177 +++TAH +D ET+ M+ R G LS + + + + RP L +E + Sbjct: 121 PILLTAHHQNDLAETMLMKLVR-----GGQLSQLVGIEAVRSFAGGRLVRPLLPFSKEQL 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205 R++ + + + W ED +N D R R R Sbjct: 176 RAYAVAKGVRWYEDATNQDLTISRNRYR 203 >gi|61216758|sp|Q9ZGE2|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis] Length = 470 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRL 80 I++A+SGG+DS+ LL+ V FG I+ +A +H +R DE +V+++ +RL Sbjct: 24 IVIALSGGADSVCLLLLFKKV--SPQFG-IELAAAHYNHGMRGKESDEDAAFVAELTNRL 80 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + + W +P T M AAR RY +S A+ A I AH DD ETV Sbjct: 81 QVPLFLETAPLKWWQQEPGTK-MEAARRLRYDFLSRSAEQAGARWIALAHHADDMAETVL 139 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R KG+ G+ + RP L RR+++ FL W D SN Sbjct: 140 FHMLRGSGIKGLSGIPAKRGPFV--------RPLLPFRRKELEEFLKAEGQHWRHDSSND 191 Query: 196 DDRFERVRVR 205 D + R R+R Sbjct: 192 SDVYTRNRIR 201 >gi|33519753|ref|NP_878585.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus] gi|61216604|sp|Q7VRC9|TILS_BLOFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33504098|emb|CAD83359.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus] Length = 531 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIK-----FSAISVDHCLRE 64 +R +V ++L+A SGG DS LL L + F G K A+ V H L Sbjct: 18 IRCIVKYRNLLLAYSGGMDSTVLLDILTKLKKYFDFQVKGTSKILPFFLRAVYVHHGLNN 77 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATL 121 A + C + ++ +S K + + A AR+ RY + K + Sbjct: 78 KADYWADHCLQQCKMRNVPFHIIYINHSDLSKIKCNIEAMARDFRYKALFNALKP--EEV 135 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIR 178 ++TAH +DQ+ETV + +R GLSGM ILY N + + RP L+C ++ Sbjct: 136 LLTAHHMNDQVETVLLALKR--GSGPAGLSGMTQDILYQHNEYQHRLLRPLLKCSHIQLQ 193 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 + ++ ++W ED +NTD RF+R +R Sbjct: 194 EYAYRKKLTWVEDDTNTDVRFDRNFLR 220 >gi|332638692|ref|ZP_08417555.1| tRNA(Ile)-lysidine synthase [Weissella cibaria KACC 11862] Length = 325 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 12/194 (6%) Query: 21 HILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV-C 77 H+LVAVSGG DS+ LL + ++ +D + SA V+H LR+ A E V Sbjct: 25 HVLVAVSGGQDSLHLLRWLTEGTLPADV---QPTVSAGYVNHQLRDDAAAEEALVRRTFA 81 Query: 78 SRLRIAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + +A+ ++ +W+ + P + ARE RY + + A+ + A +I+TAH DQ+ET Sbjct: 82 ATPHLAYGLIETLTWE-AVPTVAVEEQAREKRYEALIKMAREVGANIIVTAHHQGDQVET 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R + L GM ++ ++RP L + D+ ++Q W ED +N Sbjct: 141 ILYKLTR--GSRLTQLVGMAPRQQLRGDIDLARPLLNLTKADLADLVIQPLTEWVEDYTN 198 Query: 195 TDDRFERVRVRRFV 208 D+ F R R+R+ V Sbjct: 199 ADETFARNRMRQTV 212 >gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540] gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540] Length = 462 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 11/208 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E RFF ++ ++VAVS G DSM LL L + + + + V+H Sbjct: 7 FKRHLERGRFFDKN----DRVVVAVSTGVDSMVLLALLQELPASL---RPQIIVAHVNHR 59 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ +++E +++ D C R+ V W PQ G+ AAR+ RY ++ K AT Sbjct: 60 LRKQSEEEEQFIRDYCEDHRLKLVVHHWPLTEHPQNGIEEAARKMRYCFFAQVMKDEQAT 119 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R + L G+ + + + RP L ++ +R + Sbjct: 120 ILLTAHHQNDLAETMLMKLTR--GGQLHQLIGIEEKRPFASGT-LERPLLNFPKQRLREY 176 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ W ED +N + R R R V Sbjct: 177 AVNNHLKWYEDLTNRELTVSRNRFRHQV 204 >gi|330001721|ref|ZP_08304094.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3] gi|328537568|gb|EGF63790.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3] Length = 349 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 9/181 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L VL + A+ V H L A D V + +C + + Sbjct: 19 LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSVHADDWVAHCRQICQQWQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140 + V ++ G+ A AR ARY + T+NA +++TA DDQ ET+ + + Sbjct: 77 VPLGVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + ++ + + RP L RE +R + L +SW ED SN DD ++ Sbjct: 134 R--GSGPTGLSAMAPSSVFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190 Query: 201 R 201 R Sbjct: 191 R 191 >gi|301025926|ref|ZP_07189412.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1] gi|300395781|gb|EFJ79319.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1] Length = 432 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] Length = 522 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 26/187 (13%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +L ++ AVSGG DS+ + + G+ A +DH LR ++ + R+V Sbjct: 14 ALCGEGRVVAAVSGGGDSV------ALAVLLAAVGREAVVA-HLDHALRPGSEADARFVC 66 Query: 75 DVCSRL-------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ RL R+ + V+ + + L A ARE RYA ++E A+ A ++TAHT Sbjct: 67 ELAGRLGFPCEQRRVDAAAVA---RRKRENLEAVARELRYAFLAEVARAYGAACVLTAHT 123 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +D ETV ++ R A + +G+ ++RP L R ++R++L +R Sbjct: 124 LEDNAETVLLQLFRG-AGRALGIRAKRGR--------VARPLLEISRTELRAYLRERGER 174 Query: 188 WCEDPSN 194 W EDPSN Sbjct: 175 WLEDPSN 181 >gi|326202845|ref|ZP_08192712.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782] gi|325986922|gb|EGD47751.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782] Length = 470 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 17/194 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75 Y ++V +SGG DS+ LL L+S+ ++ IK + V+H LR E +DE +V Sbjct: 18 YGEGVIVGISGGYDSVCLLHVLYSISNELG---IKIYPVHVNHMLRGEEALRDE-NFVRS 73 Query: 76 VCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C+ L + H VS K +T L A R ARY + S A+ A+ I AH+ +DQ Sbjct: 74 FCASLGLEVYVKHVDVSKKAKIEKTSLEEAGRNARYEVFSTVAEEQGASKIAVAHSRNDQ 133 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ MR R G GL G+ N I RP L R I ++ + I D Sbjct: 134 AETILMRICR-----GTGLEGLRGMEYKRDN--IIRPLLDVDRYQIEEYVNKIGIEAVTD 186 Query: 192 PSNTDDRFERVRVR 205 SN + R R+R Sbjct: 187 SSNLHTDYFRNRIR 200 >gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 425 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYA 108 +A+ ++H +R A D+ ++V D+C +L I + V + + L A R+ARY Sbjct: 5 ITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYD 64 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 ++ K NA I AH +DQ ET R R G G+ G D NL RP Sbjct: 65 AFAKTMKKYNADKIAIAHHQNDQAETFLYRVVR-----GTGIYGAGAMREKDGNLI--RP 117 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L ++E+I +L + +W ED SN DD F R ++R V Sbjct: 118 LLCVKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIRNQV 157 >gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429] gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429] Length = 423 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL L+ V + I ++VDH LR+ +K+E+ V + L Sbjct: 23 ILIGVSGGVDSMTLLYLLNGV---KDILNIDIVCVTVDHGLRKESKEEINLVKEFSRSLD 79 Query: 82 I-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V+ + K + + AAR+ RY + + A+ I AH +D +E V Sbjct: 80 VPCISGEIDVLGYSKEK-KLSIEEAARKLRYEFFYRIKEKVGASKIAVAHNLNDLVENVL 138 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G+ G+ + I+ RP L REDI F I + D SN Sbjct: 139 FRLSRGAGPFGIYGMKPVKGNII--------RPLLFFTREDIEDFAGNNKIPYAVDKSNF 190 Query: 196 DDRFERVRVR 205 D ++ R +R Sbjct: 191 DTKYTRNFIR 200 >gi|323170980|gb|EFZ56629.1| tRNA(Ile)-lysidine synthase [Escherichia coli LT-68] Length = 432 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|213965144|ref|ZP_03393342.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46] gi|213952258|gb|EEB63642.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46] Length = 334 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 6/190 (3%) Query: 22 ILVAVSGGSDSMGLLI-ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG+DS+ L A L + + K A+ VDH L++ + + + + Sbjct: 12 VVIGLSGGADSLALTAGACAEALGPKGALAGRKVHAVVVDHQLQQGSAEVAERAAHMARE 71 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V++ N+ G AR AR+ ++ E A++ A L M AHT DDQ ETV +R Sbjct: 72 MGATAEVIAVDINNNSDRGPEYEARLARHTVLREVAQSRGAAL-MLAHTLDDQAETVVLR 130 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LS + D + + I RP L RR D + + + DP N DD Sbjct: 131 LARGGGPQA--LSAIRDNLTWSDGTRILRPLLGVRRTDTQLCCEELGLKVWHDPHNHDDH 188 Query: 199 FERVRVRRFV 208 + RVRVR+ + Sbjct: 189 YARVRVRKTI 198 >gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b] gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b] Length = 313 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + + +VDH LR A +E R V + L H ++ W+ KP++ + AR+ARY L++ Sbjct: 17 RIAVATVDHGLRPEAAEEARRVGEWARALGFEHHILRWEGEKPRSRIQERARDARYRLLA 76 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A+T+ A+ I+ AH DDQ ET+ R R GL+GM D + L Sbjct: 77 DCARTVGASAIVAAHHADDQAETILFRLTRGSGV--AGLAGMAPASRLDGLALLRP-LLG 133 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R++ + + + DPSN + + RVR+R Sbjct: 134 LRKQALEALCEAAGQPFFRDPSNENPAYARVRLR 167 >gi|319891462|ref|YP_004148337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317161158|gb|ADV04701.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius HKU10-03] Length = 429 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 25/219 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78 HI+VAVS G DSM LL H +L D + + + + V H LRE ++ E ++ C Sbjct: 10 HIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFIQHYCEQH 66 Query: 79 -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RL ++ V ++ + ARE RY ++A ++TAH DDQ Sbjct: 67 DIPFYMKRLDLSDVVAEGRS------IQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET++ R + K S TI + RP L + IR++ Q ++ + ED Sbjct: 121 VETIFYRL---FTGKSTRSSLGMSTIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177 Query: 192 PSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVK 229 SN ++ + R +R R + ID +A ++K Q L++K Sbjct: 178 TSNANNTYVRNDIRNRILPQIDENA---QLKSQQLLKLK 213 >gi|42572523|ref|NP_974357.1| RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen bonds / nucleotide binding [Arabidopsis thaliana] gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana] Length = 660 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 25/214 (11%) Query: 22 ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRY 72 I + VSGG DSM L + L V +++ G I AI VDH LR+ +KDE Sbjct: 87 IALGVSGGPDSMALCVLTAKWKTEGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAEL 144 Query: 73 VSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFD 129 V S++ I + S W + +P+ G L AARE RY +IS +++ AH D Sbjct: 145 VCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHAD 204 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIR 178 DQ E +R R G+ + I + + ++ + RP L +ED+ Sbjct: 205 DQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMY 264 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 W EDP+N F R R+R + +++ Sbjct: 265 KICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLE 298 >gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 469 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 20/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78 ++VAVSGG DS+ L + L ++ +G VDH +RET+ + +VS + Sbjct: 33 MVVAVSGGGDSVALALLLKRFWPGEQVWGH-------VDHGIRETSGRDADFVSALAESW 85 Query: 79 --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R + V K ++ MAA R R+A + + A + A I TAHT DDQ ETV Sbjct: 86 GIRCHVGRFHVPTDRIKGESMEMAA-RRVRHAFLEDLASRLGAGFIATAHTVDDQAETVM 144 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL G+ I W+ RP + RR ++R +L + ++SW ED +N Sbjct: 145 LNLLR-----GTGLWGLA-GIPQRRGPWV-RPVIAMRRWELRRYLEESSVSWVEDETNLC 197 Query: 197 DRFERVRVR 205 + R +VR Sbjct: 198 CDYRRNQVR 206 >gi|298505922|gb|ADI84645.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter sulfurreducens KN400] Length = 471 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 29/219 (13%) Query: 3 LSPIESVRFFVRS------LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 LSP+++V VR+ + P ++VAVSGG+DS +AL +L + ++ Sbjct: 4 LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADS----VALVDILVSLNELRLDLVV 59 Query: 56 ISVDHCLRETAKDEVRYVSDVC---------SRLRIAHSVVSWKNSKPQTGLMAAAREAR 106 ++H LR A DE + C SR ++ W+ + L A R AR Sbjct: 60 AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWE----RLSLEDAGRRAR 115 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 YA + A A + AH DDQ ET+ MR R G+GLS M + Sbjct: 116 YAFFDDVAAACGARTVALAHHADDQAETLLMRLVR--GAGGLGLSAMQPVGAGGKYV--- 170 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RP L R++I ++L R +++ +D SNTD F R R+R Sbjct: 171 RPLLALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIR 209 >gi|325579079|ref|ZP_08149035.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC 33392] gi|325159314|gb|EGC71448.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC 33392] Length = 430 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS LL + + R + AI + H L A + +C + Sbjct: 18 LLIAFSGGLDSTALLSLVKKLSEKRP--HLSLRAIHIHHGLSPNADTWTTHCQQLCEQFA 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ + G+ A AREARY I +H + ++TAH +DQ ET ++ +R Sbjct: 76 IP-LIIEKVKVEMHNGIEAGAREARYRAILKHIQP--DEYLVTAHHLNDQTETFFLALKR 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + ++ L+ + I RP L R ++ ++ + +SW ED SN D+ ++R Sbjct: 133 GAGLQGLG-AMQKESQLFGMP--ILRPLLSFSRYELEDYVQRETLSWVEDESNQDNHYDR 189 Query: 202 VRVR 205 +R Sbjct: 190 NFLR 193 >gi|302388372|ref|YP_003824194.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1] gi|302199000|gb|ADL06571.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1] Length = 458 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 ++VA+SGG+DS+ LL+ L+ + + + A+ V H LR D R Y D+ +RL Sbjct: 21 VIVALSGGADSVCLLVVLNELKEELGL---ELKAVHVHHGLRGKEADRDRDYSRDLSARL 77 Query: 81 RIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ S V + + + A R RY + + + T I AH DDQ ET+ Sbjct: 78 GVSFSCVQVDAALYAGEHGMSVEEAGRHLRYQIFEKERLDFSGTKIAVAHHRDDQAETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R KG+G GM L I RP L RE+I ++L ++ IS+CED +N Sbjct: 138 YNLFRGTGLKGLG--GM-----RPLRDRIVRPLLCVGREEILAYLEEKRISYCEDSTNAQ 190 Query: 197 DRFERVRVRRFV 208 + R R+RR + Sbjct: 191 TDYVRNRIRRRI 202 >gi|198244025|ref|YP_002214197.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254789043|sp|B5FJ36|TILS_SALDC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|197938541|gb|ACH75874.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621940|gb|EGE28285.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 430 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A+ VR+ VC+R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHAESWVRHCETVCARWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|297570853|ref|YP_003696627.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931200|gb|ADH92008.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 361 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 8/180 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV VSGGSDSM L L V G I A+ VDH +R + E +V D+ R R Sbjct: 27 VLVGVSGGSDSMALAATLAFVAP--KLG-ILVHAVCVDHGIRPESVQEAAFVRDIL-RKR 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-NAT---LIMTAHTFDDQLETVYM 137 V + +G AREARY I+ +A+++ NA ++ HT +DQ ETV M Sbjct: 83 GVPVEVCRVDVDGSSGPEGNAREARYDAIATYARSLGNAAGPAVVFLGHTQNDQAETVLM 142 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R K + + ++ + RPFL R+++R+ + ++ W +DPSN D Sbjct: 143 GFARGSGAKSIAGMPAVGHLPLHRDVPMQRPFLEFTRDELRTVCSELDVPWVDDPSNDLD 202 >gi|238911302|ref|ZP_04655139.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 430 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 29/325 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255 R F+R L AL L +++ V + + L+ + L + I ++ Sbjct: 188 ---RNFLR---LRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240 Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 L + +L +R +A + +P ++ER+ + + C+ G Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDRE 300 Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332 I R ++ WI T +++P Sbjct: 301 IRRYQSQLWWIKTVAGQHETTVVWP 325 >gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 334 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 14/200 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR +R L LVA SGG+DS+ L +A + R+ G A++VDH L+E Sbjct: 14 AVRRVLRDLPDDTTALVACSGGADSLALAGAVAFEAPRVGRTAG-----AVTVDHGLQEG 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + V+ V + L + +V G A+AR ARY + +++ Sbjct: 69 SDRRAEDVAKVLAGLGLDPVLVRTVRVTGPGGPEASARRARYEALDGAVAERAPAVVLLG 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + L+GM + + L RP L R +R + Sbjct: 129 HTLDDQAETVLLGLARGSGAR--SLAGMAPRVGHRL-----RPLLDLDRATVREACARMG 181 Query: 186 ISWCEDPSNTDDRFERVRVR 205 + EDP N D RF R RVR Sbjct: 182 LDAWEDPHNLDPRFARSRVR 201 >gi|39996909|ref|NP_952860.1| cell cycle protein MesJ [Geobacter sulfurreducens PCA] gi|61216575|sp|Q74C65|TILS_GEOSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39983797|gb|AAR35187.1| cell cycle protein MesJ, putative [Geobacter sulfurreducens PCA] Length = 471 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 29/219 (13%) Query: 3 LSPIESVRFFVRS------LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 LSP+++V VR+ + P ++VAVSGG+DS +AL +L + ++ Sbjct: 4 LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADS----VALVDILVSLNELRLDLVV 59 Query: 56 ISVDHCLRETAKDEVRYVSDVC---------SRLRIAHSVVSWKNSKPQTGLMAAAREAR 106 ++H LR A DE + C SR ++ W+ + L A R AR Sbjct: 60 AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWE----RLSLEDAGRRAR 115 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 YA + A A + AH DDQ ET+ MR R G+GLS M + Sbjct: 116 YAFFDDVAAACGARTVALAHHADDQAETLLMRLVR--GAGGLGLSAMQPVGAGGKYV--- 170 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RP L R++I ++L R +++ +D SNTD F R R+R Sbjct: 171 RPLLALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIR 209 >gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ST-III] Length = 448 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 30/284 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVS G DSM LL L + + + + V+H LRE ++ E Y+ C + Sbjct: 23 VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W + P++G+ AA R+ RY + ++ + AT ++TAH +DQ+ET M+ Sbjct: 80 LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139 Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R D ++ L+G+ + + I RP L ++ +R++ ++++ + ED +N D Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194 Query: 199 FERVRVR---------------RFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIP 239 R R+R + V D L M K Q + V ++ V A+++ Sbjct: 195 LTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLMAKKQMVTVLLSQVVTATGALVVD 254 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 ++ + + +A+ L + LF ++ + GQ + P Sbjct: 255 QWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQRTRPA 298 >gi|309806956|ref|ZP_07700938.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b] gi|308166576|gb|EFO68773.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b] Length = 409 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 13/189 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+S G DSM LL + ++ D + + VDHCLR + E ++ C + ++ Sbjct: 1 MAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYKLQ 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 58 LEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLRSG 117 Query: 144 AEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + M + D L + RP L +E++ + +R +++ D +N ++ Sbjct: 118 NVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENET 171 Query: 200 ERVRVRRFV 208 R R+R FV Sbjct: 172 LRNRLRHFV 180 >gi|84624777|ref|YP_452149.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368717|dbj|BAE69875.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 434 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 87/344 (25%), Positives = 138/344 (40%), Gaps = 37/344 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134 C L++ +V + + GL AAAR AR+ A T+ A +T AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +R+ R ++G+ + D LW RP L R D+ ++ L + + W EDPSN Sbjct: 126 FLLRALRASGQEGLA-AMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPSN 182 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D R + R F+R L L + + D + A L + ++ +A+ Sbjct: 183 ADPRHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLP 234 Query: 255 DILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + L + LR +A + G ++ER + + ++ C Sbjct: 235 SVCTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQAC 294 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 + +V + R L++ R PT + WDG Q Sbjct: 295 FAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333 >gi|332095129|gb|EGJ00161.1| tRNA(Ile)-lysidine synthase [Shigella boydii 5216-82] Length = 432 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADSWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|315185670|gb|EFU19438.1| tRNA(Ile)-lysidine synthetase [Spirochaeta thermophila DSM 6578] Length = 472 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 104/230 (45%), Gaps = 30/230 (13%) Query: 6 IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E V F + V A +LVA SGG DS LL HS+ R + + +DH +R Sbjct: 2 LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALL---HSLFLLRQRLNLTLKVVYLDHGIR 58 Query: 64 ETAK--DEVRYV------SDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 ++ E R+V D+ S + R+ + + + + ARE RYA E Sbjct: 59 PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173 + HT DDQ+ETV R R + G+S + D L RP L C Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDPLALRGMSPVRDRYL--------RPLLSCS 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 R ++ SFL ++ +S+ ED SN D ++ R F+R +H L L K+F Sbjct: 171 RSEVLSFLQEQGLSYLEDSSNEKDSYD----RNFLR---IHVLPLLEKRF 213 >gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1] gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1] Length = 324 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 27/213 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 ++P SV ++ PA + V SGG+DS LL+ L + A VDH Sbjct: 1 MITPFNSVAGRMQMDGLPAEVAVGWSGGADSTALLLMLQQQ-------GYRVQAWHVDHG 53 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKT 116 RE++ E +++ I V S +N + A AR+ RYA + ++ Sbjct: 54 WRESSIKETELLAEKARGWEIELQVARLPAPSGRNRE------AEARKGRYAQFEQWSEA 107 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCR 173 T + H DDQ ETV MR +G G+SG C + L I RP L+ + Sbjct: 108 TGITTLCLGHHRDDQAETVCMR-----MLQGAGISG-CRGMQQRRRHGRLDIFRPLLQVK 161 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 ++++ L +I+W EDPSN D R R+R+ Sbjct: 162 AGELKAALRAADINWLEDPSNNDMTIWRNRIRQ 194 >gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359] gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359] Length = 461 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 90/334 (26%), Positives = 140/334 (41%), Gaps = 29/334 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 ++VAVSGG DS+ LL L + L DR + A V+H LR A +E +V + Sbjct: 25 VIVAVSGGPDSIALLHIL-AALQDR--WSLHLVAAYVNHGLRAAAFEEEVFVESQARAVG 81 Query: 81 ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI + ++ K + A R RYA SE A+ A I H DDQ ET Sbjct: 82 AEFYCRRIDAAAIAEKQG---LSIETAGRNERYAFFSELAEKTGAVRIAVGHHEDDQAET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M R G G+SG + N I RP L R+DI + L + N+ W D SN Sbjct: 139 VLMHLLR-----GGGVSGA--GAMKAKNGLIIRPLLCVPRQDILTALNEVNLPWRVDESN 191 Query: 195 TDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSI 249 + R R+R +++I+ + + +F + + N + K L + R+ Sbjct: 192 ESREYLRNRIRHDIMPLLKNINPQ-VTAALNRFASISRQENMYMENEAVKQLKLAERRNE 250 Query: 250 IAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 DI ++ L ++R++ I P + ++ER++ ++ V Sbjct: 251 RGFYLDIPILTDLHEALQRRVVRLAVQEMTKDIYAPDFAAVERILGLCRATSGKQVRFKD 310 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 +++ RR L TR V TL E G Sbjct: 311 LIVYRRGRGLCFTRGVARKATLFTTDREEVFIKG 344 >gi|157376277|ref|YP_001474877.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3] gi|157318651|gb|ABV37749.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3] Length = 494 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +++A SGG DS L L S R + ++ + V H L A VR+ ++ Sbjct: 29 SQLVLAYSGGVDSEVLAQGLASFA--RHNPQYRYLLVHVHHGLSSNADAWVRHCQSQAAK 86 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + K P+ + A AR ARY I+ +A ++TAH DDQLETV + Sbjct: 87 YQLPIEIRQVKVKMGPRLSIEAQARSARYEAITSLMAPGDA--LLTAHHLDDQLETVLLA 144 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG LS M + +D N + RP L RE I S + I+ ED SN D + Sbjct: 145 LKRGLGPKG--LSAMGEVQAFDNNKQLLRPLLSISREQIESLATSQAIAHIEDESNQDTK 202 Query: 199 FER 201 ++R Sbjct: 203 YDR 205 >gi|313201479|ref|YP_004040137.1| tRNA(ile)-lysidine synthetase [Methylovorus sp. MP688] gi|312440795|gb|ADQ84901.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. MP688] Length = 439 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + ++ F+ +LVA+SGG DS LL L ++ ++ I+ SA+ V H L A Sbjct: 3 QHLQQFITQHHIEGRLLVALSGGLDSCVLLHLLATLPNNPG---IRLSAMHVHHGLSPHA 59 Query: 67 KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +C+ L++ H V + + GL AAAR RY E + +A + Sbjct: 60 DQWAEHCQRLCASHAIPLQVVHVQVPRDSGQ---GLEAAARHLRY----EAMRAAHADYV 112 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH DDQ ETV ++ R G G+ G+ +D + RP L R + + Sbjct: 113 VLAHHQDDQAETVMLQLLR-----GAGMRGLAAMASHDAQQRLLRPLLDISRAQLAEYAA 167 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 Q + W ED SN D ++R R+ V Sbjct: 168 QHQLEWVEDESNQDTHYDRNFCRQQV 193 >gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis] Length = 308 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRL 80 I++A+SGG+DS+ LL+ V FG I+ +A +H +R DE +V+++ +RL Sbjct: 24 IVIALSGGADSVCLLLLFKKV--SPQFG-IELAAAHYNHGMRGKESDEDAAFVAELTNRL 80 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + + W +P T M AAR RY +S A+ A I AH DD ETV Sbjct: 81 QVPLFLETAPLKWWQQEPGTK-MEAARRLRYDFLSRSAEQAGARWIALAHHADDMAETVL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G+ G+ I ++ RP L RR+++ FL W D SN Sbjct: 140 FHMLR-----GSGIKGLS-GIPAKRGPFV-RPLLPFRRKELEEFLKAEGQHWRHDSSNDS 192 Query: 197 DRFERVRVR 205 D + R R+R Sbjct: 193 DVYTRNRIR 201 >gi|307565061|ref|ZP_07627574.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A] gi|307346230|gb|EFN91554.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A] Length = 456 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 21/192 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR- 79 LVA+SGG+DS+ LL+ LH + K +A+ + LR E+ +DE ++ D+C+R Sbjct: 22 LVALSGGADSVSLLLILHQL-------GYKINAVHCNFKLRGEESYRDE-QFCIDLCNRH 73 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L+ H + S + + AARE RY + K+INA + H +D +ET+ Sbjct: 74 DIPLKRIHFDTTEYASLRKISIEMAARELRYTYFEQLRKSINAEGVCVGHHQEDSVETIL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+ T + N + RP L C R+DI +F++ + D SN Sbjct: 134 LNLTR-----GTGIHGL--TGIAPRNGNVIRPLLSCTRKDIETFIIGEGEHYVTDSSNLV 186 Query: 197 DRFERVRVRRFV 208 R ++R V Sbjct: 187 SNVVRNKLRLLV 198 >gi|269218250|ref|ZP_06162104.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212378|gb|EEZ78718.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str. F0332] Length = 351 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 10/179 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGGSDSM L A +V R G I S+++VDH RE + DE V + + Sbjct: 31 LLAVSGGSDSMAL--AQAAVFVCRREG-IVASSLTVDHGWREGSADEAASVRSALEAMGV 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQR 141 + V+ SK GL +AAR ARYA ++E A+++ ++ HT DDQ ETV M R Sbjct: 88 ESAGVARVESKGGGGLESAARAARYAALAEAARSMPGRAAVVCGHTADDQAETVLMGLGR 147 Query: 142 DYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + GM G C ++ + RPFL RR D+R L + W EDP+N D Sbjct: 148 GSGPRSIAGMPAVGACPGA---PDVPLVRPFLGLRRADLRQALASEGVEWVEDPTNDVD 203 >gi|152968782|ref|YP_001333891.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953631|gb|ABR75661.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 437 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 108/425 (25%), Positives = 175/425 (41%), Gaps = 52/425 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVA SGG DS + LH ++ R + A+ V H L A V + VC + Sbjct: 19 LLVAFSGGLDST---VLLHQLVQLREQDPALTLRAVHVHHGLSAHADQWVAHCRQVCQQW 75 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139 ++ V ++ G+ A AR ARY E T+NA +++TA DDQ ET+ + Sbjct: 76 QVPLVVHHVTLARGGLGVEAHARAARYQAFQE---TLNAGEVLVTAQHQDDQCETLLLAL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GLS M + + + + RP L RE +R + L +SW ED SN DD + Sbjct: 133 KRGSGP--TGLSAMAPSSAFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTY 189 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDI 256 + R F+R + L + F + + + A L+ + L + S++A Sbjct: 190 D----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVA-EDGS 244 Query: 257 LNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309 L I R +A + G Q +P ER+ + + C+ +G + Sbjct: 245 LAIAPLATMSPPRRAALLRRWLAGQQAPMPAREVPERLWHEVALAREDASPCLRLGEFTV 304 Query: 310 DR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + W V+ LP + W Q L+D L ++ Q + PS Sbjct: 305 RRFQQRLYW----VKYLPGQT---DSVQRWPDWRQPLRLADGLGELTLQPGGRLRPPSAD 357 Query: 369 PPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSI 410 P+ + RA + + GG+ L +AP+ R T + P+A A F Sbjct: 358 EPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTTPLLFYGETPIAAADDLFVT 417 Query: 411 SFGKV 415 + G+V Sbjct: 418 TEGEV 422 >gi|74310809|ref|YP_309228.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei Ss046] gi|73854286|gb|AAZ86993.1| cell cycle protein [Shigella sonnei Ss046] Length = 432 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|325287915|ref|YP_004263705.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489] gi|324323369|gb|ADY30834.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489] Length = 434 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 170/390 (43%), Gaps = 42/390 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81 LVA SGG DS+ +L L + L ++ FS + LR+ A D + +V + +L+ Sbjct: 22 LVACSGGVDSV-VLAHLCAAL------QLDFSIAHCNFKLRDAASDADEEFVRQLALQLQ 74 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V ++ +K + + AAR+ RY+ ++ K N ++T H DD LET + Sbjct: 75 KKIYVTNFNTVGYVAKNKVSIQMAARDLRYSWFAKLVKENNLETVLTGHQADDNLETFLI 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G+ G+ + ++RP L R++I F Q NI W ED SN + Sbjct: 135 NLSR-----GTGVGGLLG--IPSKTSALARPLLPFTRDEIEDFAKQNNIKWREDKSNKET 187 Query: 198 RFERVRVR-RFVRDI-DLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 ++ R R+R + V ++ +LH +L+ Q+ V + + +L K L V +I Sbjct: 188 KYLRNRIRHKIVPELKELHPTFLQNFNNTQAYLQETSVLAEDYIKLLKNK-LFVRKNGVI 246 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVV 308 +S L L YL + S G+ + V +L SGK+ R+V Sbjct: 247 EVSVSKLLTYKPLKTYLYAL--------FSSYGFTEWQDVANLLTAMSGKQVLSRTHRLV 298 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS-G 367 +R L + + L+ +ET + + FQN+S+ I I + D Sbjct: 299 KNRENLLLQELKEANSDVYLVNKDQETISYPIKLHFQNVSE--IGITNDTTIYVDKSKLK 356 Query: 368 IPPIIAQRALSSM--PSKEGGKPLLAPFSR 395 P ++ +R + P + GK L+ F + Sbjct: 357 FPLVLRKREEGDVFYPFGQNGKKKLSKFYK 386 >gi|319399666|gb|EFV87920.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909] Length = 431 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 35/229 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C + Sbjct: 12 AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCQQ 68 Query: 80 LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I +V+ NS Q AR+ RY + + A +++TAH DDQ Sbjct: 69 HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIISQLRADVLLTAHHLDDQ 123 Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 LET+ RS R+ +G++ Y + RP L ++ +I ++ I Sbjct: 124 LETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQHANQI 175 Query: 187 SWCEDPSNTDDRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVK 229 + ED SN D ++ R +R+ + + L+A LK+K + D+ ++ Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAYQLLKLKDWHDIELQ 224 >gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455] gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455] Length = 434 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +L+ VSGGSDSM LL A R + + + +DH LR + + +V C+ L Sbjct: 25 VLLGVSGGSDSMSLLCAF-----SRLYEPSQLVVLHMDHGLRGASSRDGEFVKKRCAELG 79 Query: 81 ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R S +S K + AA R RY L E A+ L+ HT DD E Sbjct: 80 VRCVIERRPVSALSRKGESEE----AAGRRLRYELYEETAQRFGCRLVALGHTRDDLAEN 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M R G GL G+ + +++I RP L RR+++R FL + SW +D +N Sbjct: 136 TLMNLAR-----GCGLWGVAG-MPEQRDIYI-RPLLSFRRQELRDFLRAQGWSWVDDETN 188 Query: 195 TDDRFERVRVRRFV 208 + ++R RVR V Sbjct: 189 ALNIYQRNRVRNEV 202 >gi|297620920|ref|YP_003709057.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044] gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044] Length = 438 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 8/196 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F R + A +L+A SGG DSM LL ++ R ++F VDH R+ + DE Sbjct: 11 FLKRCTPFNAPVLIACSGGPDSMALL---RMMVEYRKTHSVRFGVAHVDHRWRKESADEA 67 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +C + + + Q L A R R + +M H DD Sbjct: 68 ETLRALCREIDVPFHLKEIDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWC 189 Q ETV R + G GM + +Y+ + W RPFL+ R++ + ++L RN + Sbjct: 128 QAETVLKRVFEGAKLEKCG--GMQEISVYETIPFW--RPFLQVRKQKLIAWLNLRNFPYF 183 Query: 190 EDPSNTDDRFERVRVR 205 DP+N D F R ++R Sbjct: 184 IDPTNNDSSFLRSKIR 199 >gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1] gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1] Length = 448 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 11/190 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVS G DSM LL L + + + + V+H LRE ++ E Y+ C + Sbjct: 23 VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W + P++G+ AA R+ RY + ++ + AT ++TAH +DQ+ET M+ Sbjct: 80 LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139 Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R D ++ L+G+ + + I RP L ++ +R++ ++++ + ED +N D Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194 Query: 199 FERVRVRRFV 208 R R+R V Sbjct: 195 LTRNRIRHRV 204 >gi|28377429|ref|NP_784321.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1] gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|61216640|sp|Q88Z33|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28270261|emb|CAD63162.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1] gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 448 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 11/190 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVS G DSM LL L + + + + V+H LRE ++ E Y+ C + Sbjct: 23 VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + W + P++G+ AA R+ RY + ++ + AT ++TAH +DQ+ET M+ Sbjct: 80 LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139 Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R D ++ L+G+ + + I RP L ++ +R++ ++++ + ED +N D Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194 Query: 199 FERVRVRRFV 208 R R+R V Sbjct: 195 LTRNRIRHRV 204 >gi|218703442|ref|YP_002410961.1| tRNA (Ile)-lysidine synthetase [Escherichia coli UMN026] gi|293403257|ref|ZP_06647354.1| tilS [Escherichia coli FVEC1412] gi|298378793|ref|ZP_06988677.1| tilS [Escherichia coli FVEC1302] gi|300900770|ref|ZP_07118916.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1] gi|218430539|emb|CAR11405.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UMN026] gi|284919963|emb|CBG33018.1| tRNA(Ile)-lysidine synthase [Escherichia coli 042] gi|291430172|gb|EFF03186.1| tilS [Escherichia coli FVEC1412] gi|298281127|gb|EFI22628.1| tilS [Escherichia coli FVEC1302] gi|300355755|gb|EFJ71625.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1] Length = 431 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|300920126|ref|ZP_07136579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1] gi|300412860|gb|EFJ96170.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1] Length = 432 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADTWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC R ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCKRWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|269926166|ref|YP_003322789.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789826|gb|ACZ41967.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 442 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 18/196 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVC 77 +++ +SGG+DS+ L L+ + RS I S DH LR + D+ +Y+ Sbjct: 1 MILGLSGGADSIALFHVLYEL---RSILGINISVAHFDHRLRPESSDQASQLAKYIEQFD 57 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V+ + + + AR+ RY ++ A+ NA L+ AH DQ ET + Sbjct: 58 VNFYLGSADVAGAALQAKASIEDTARKYRYDFLAACARKENA-LVCVAHNQQDQAETFLL 116 Query: 138 RSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G GL G+C D + + ++ + RPFL EDIR++ ++ EDP Sbjct: 117 NLAR-----GTGLDGLCGMLPIDRVPGNPDVELVRPFLGIAHEDIRNYCRLNSLPVIEDP 171 Query: 193 SNTDDRFERVRVRRFV 208 SN F R ++R V Sbjct: 172 SNLSLDFTRNKIRHLV 187 >gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2] gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2] Length = 462 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 34/253 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V VSGG DS+ LL H + R +I+ A VDH R E + + +V D C + Sbjct: 22 IVVGVSGGPDSIALL---HYFWNQRQQLQIELIAAHVDHMFRGEESFQDAMFVKDYCRKK 78 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V K AAR+ RY+ AK A I H DDQ+ET+ Sbjct: 79 AIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYGAEYIALGHHGDDQVETIL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G +G+ + + +I RPFL R +I + L+ ++ DPSN Sbjct: 139 MRLTR--GSTGSARAGIPFKRPFG-DYFIIRPFLCLNRAEIEDYCLKERLNPRRDPSNEK 195 Query: 197 DRFERVRVR-------------------RFVRDIDLHALYLK----MKKFQDLRVKVNNA 233 + R R R RF D+ YL+ K ++ KVN Sbjct: 196 GIYSRNRFRQEVLPFLRKENPQVHEHFQRFSEDLQSDEAYLQELTVHKMNTVMKKKVNEE 255 Query: 234 VAMLIPKYLTVHM 246 ++M I + + M Sbjct: 256 ISMDIDAFEAMPM 268 >gi|188995854|ref|YP_001930106.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277] gi|226695545|sp|B2RMB4|TILS_PORG3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|188595534|dbj|BAG34509.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277] Length = 454 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 89/193 (46%), Gaps = 26/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77 +LVA+SGG+DS+ LL L R G +A HC LR DE +V +C Sbjct: 26 VLVALSGGADSVALLCVL------RELGYETVAA----HCNFHLRGVESDEDAAFVEGLC 75 Query: 78 SRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L RI V + + + AARE RY K + + AH DD Sbjct: 76 RDLDVPLHRIDFDTVRYARER-SISIEMAARELRYEWFGLLRKELAIEYVAVAHHADDNA 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + R G G+SG+C + Y N I RP L R++I ++LL + I++ D Sbjct: 135 ETMVLNLCR-----GTGISGLC-GMPYKRNDGIVRPLLDATRDEIEAYLLDQKITYRTDS 188 Query: 193 SNTDDRFERVRVR 205 SN D RF R VR Sbjct: 189 SNEDTRFRRNLVR 201 >gi|238893184|ref|YP_002917918.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545500|dbj|BAH61851.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 433 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L VL + A+ V H L A D V + +C + + Sbjct: 15 LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 72 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140 + V ++ G+ A AR ARY + T+NA +++TA DDQ ET+ + + Sbjct: 73 VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 129 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + + RP L RE +R + L +SW ED SN DD ++ Sbjct: 130 RGSGP--TGLSAMAPSSAFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 186 Query: 201 R 201 R Sbjct: 187 R 187 >gi|74316607|ref|YP_314347.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259] gi|74056102|gb|AAZ96542.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259] Length = 445 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 25/204 (12%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 R + A +++A+SGG DS+ + LH + S R + +A+ V H L A D Sbjct: 5 LARHVFSGARLVLALSGGLDSV---VLLHVLASLRGRHRFALAAVHVHHGLSPHASD--- 58 Query: 72 YVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +D C RL AH++ V P G AAAR R+ + + ++A ++TA Sbjct: 59 -WADFCERLCAAHALDLQVERVHIAGDDP-AGTEAAARRERHRVFAR----LDADFVLTA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLL 182 H DDQ ETV ++ R KG L+ M L W + RP L R IR+ Sbjct: 113 HHLDDQAETVLLQLLRGAGPKG--LAAMPQ--LRRPAGWRAAQLRPLLDVSRRAIRAHAQ 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRR 206 + ++W ED SN D R+ R +RR Sbjct: 169 RHGLAWVEDESNLDLRYRRNALRR 192 >gi|26246135|ref|NP_752174.1| tRNA(Ile)-lysidine synthetase [Escherichia coli CFT073] gi|227884899|ref|ZP_04002704.1| PP-loop superfamily ATPase [Escherichia coli 83972] gi|300993591|ref|ZP_07180447.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1] gi|301049898|ref|ZP_07196824.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1] gi|61216659|sp|Q8FL00|TILS_ECOL6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|26106532|gb|AAN78718.1|AE016755_218 Putative cell cycle protein mesJ [Escherichia coli CFT073] gi|227838037|gb|EEJ48503.1| PP-loop superfamily ATPase [Escherichia coli 83972] gi|300298351|gb|EFJ54736.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1] gi|300406514|gb|EFJ90052.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1] gi|307552038|gb|ADN44813.1| tRNA(Ile)-lysidine synthase [Escherichia coli ABU 83972] Length = 437 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|300362403|ref|ZP_07058579.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus gasseri JV-V03] gi|300353394|gb|EFJ69266.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus gasseri JV-V03] Length = 431 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 15/208 (7%) Query: 7 ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E FF ++ + L+A SGG DS+ L L + L D S I +DHCLR+ Sbjct: 3 EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPDPSEQLI---VAHLDHCLRK 59 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 + E + + + ++ SW + PQTG+ A ARE RYA ++ K ++ Sbjct: 60 DSYLESELLQRLATAFKVKLIEKSWPLALHPQTGIEARAREFRYAFLANTGKKYQVDYLL 119 Query: 124 TAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 TAH DD +E + ++ R D AE + + G ++ + + RP ++ ++ + + Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQVVGNFNS------MKLLRPLIKYSKDQLLEY 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 Q ++ + ED +N +D R R+R V Sbjct: 174 DKQNSLDYIEDETNFEDDTLRNRLRHHV 201 >gi|323465368|gb|ADX77521.1| tRNA(Ile)-lysidine synthetase, putative [Staphylococcus pseudintermedius ED99] Length = 429 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 25/219 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78 HI+VAVS G DSM LL H +L D + + + + V H LRE ++ E ++ C Sbjct: 10 HIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFIQHYCEQH 66 Query: 79 -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RL ++ V ++ + ARE RY ++A ++TAH DDQ Sbjct: 67 DIPFYMKRLDLSDVVAEGRS------IQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ETV+ R + K S TI + RP L + IR++ Q ++ + ED Sbjct: 121 VETVFYRL---FTGKSTRSSLGMSTIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177 Query: 192 PSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVK 229 SN + + R +R R + ID +A ++K Q L++K Sbjct: 178 TSNASNTYVRNDIRNRILPQIDENA---QLKSQQLLKLK 213 >gi|315294592|gb|EFU53939.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 153-1] Length = 437 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|312796646|ref|YP_004029568.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI 454] gi|312168421|emb|CBW75424.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI 454] Length = 476 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 14/193 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + +A SGG DS LL A + R G + A+ V H L A + +DV R Sbjct: 28 ASVAIAFSGGIDSTVLLHA-----ATRVLGARRCVALHVHHGLSPHADAWRSHCADVACR 82 Query: 80 LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L +A + ++ PQ + A AR+ARYA + + ++ H DDQ ETV ++ Sbjct: 83 LDVAFDCRAVAITRTPQHSVEALARDARYAALEQMCAAHRVRVLWLGHHADDQAETVLLQ 142 Query: 139 SQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G GL G+ L+ + L RP L R + ++ Q + W ED SN Sbjct: 143 LLR-----GAGLPGLAAMPLHRVLPNGLIHVRPLLPVLRASLDAYARQHTLRWIEDESNA 197 Query: 196 DDRFERVRVRRFV 208 D R+ R VRR V Sbjct: 198 DLRYARNAVRRHV 210 >gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT] gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT] Length = 464 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VA+SGG DS+ LL LH++ + + I A V+HCLR E A ++ YV +C L Sbjct: 21 VVVALSGGPDSICLLHILHTLKDEIN---ISIVAAHVNHCLRGEAADNDEMYVKKICEEL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V V + + A RE RY E IN I AH +DQ ETV Sbjct: 78 GIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNANDQAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ N+++ RP + R++I ++ ++ D +N + Sbjct: 138 MRILR-----GTGLEGLVGIRPVRDNIFV-RPIINLTRDEIENYCDINKLNPRIDKTNFE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 NIYTRNKIR 200 >gi|331671694|ref|ZP_08372492.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA280] gi|331071539|gb|EGI42896.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA280] Length = 432 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G+ G + RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAGLSAMGKVSEFAGTR---LIRPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|291166567|gb|EFE28613.1| tRNA(Ile)-lysidine synthase [Filifactor alocis ATCC 35896] Length = 466 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 17/206 (8%) Query: 6 IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E++R +L+ P ++VA SGG DS+ LL LH + ++ IK A ++H +R Sbjct: 8 LETIR--QNNLIQPKEKVIVAFSGGPDSVCLLHLLHELKAELD---IKLYAFHLNHQIRG 62 Query: 65 -TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 A + Y +C I V S + L AAR+ RY + +NA Sbjct: 63 LDAHRDAWYCLSLCDEYDIPFFVDSTDVPGYAQNMKMSLEEAARDVRYKKLFYLKSILNA 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I AH DDQ+ETV MR R G GL G+ + L+ I RP L ++++I Sbjct: 123 DKIAVAHNMDDQVETVLMRMMR-----GTGLYGL-KGMEQLLSNGIIRPLLSVQKKEIIE 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 L Q I W D +N +D + R ++R Sbjct: 177 ELEQNGIHWQVDTTNQEDNYTRNKIR 202 >gi|215485349|ref|YP_002327780.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str. E2348/69] gi|312966325|ref|ZP_07780551.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75] gi|215263421|emb|CAS07741.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str. E2348/69] gi|312289568|gb|EFR17462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75] Length = 437 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADVWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSAFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|116515015|ref|YP_802644.1| hypothetical protein BCc_073 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256869|gb|ABJ90551.1| tRNA(Ile)-lysidine synthetase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 435 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 145/293 (49%), Gaps = 28/293 (9%) Query: 12 FVRSLV--YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 F++ L YP L+A+SGG DS L L ++ + F +I F I ++H L AK Sbjct: 2 FIKKLFKKYPTKKKFLLALSGGVDSTVLFYQL--IIWKKKFQEINFRTIHINHHLHSHAK 59 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++C + +I + K + G+ +R R + ++ + +++T H Sbjct: 60 LAQKHCINICKKNKIEIKIFDIIIPKKNKYGIEGYSRLERLKIFKKN--ILPEEILLTGH 117 Query: 127 TFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 +D E +++ +R + G+ G+SGM YD N+ I RP + ++E+I + ++ Sbjct: 118 NMNDLCENIFLSLKR---KSGINGISGMNFYSKYD-NIKIIRPLINIKKENILFWAKKKK 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYL 242 I W ED SN +++++ R F+R+ L +YLK F +K N + ++ +L Sbjct: 174 IKWIEDQSNKNNQYD----RNFIRNKILSKIYLKWPYFLKNSIKSINLLKKDKKILNYFL 229 Query: 243 TVHMRSIIAISQ--DILNIDSTLL---FYLLRVSAAICGGQISLPGYRSMERV 290 + ++ I + + ++N D+ +L F +L++ QI +P Y ++R+ Sbjct: 230 SKFLKKNIYLDKTLSLINFDNLILEAKFSILKMWLY-NNSQI-IPTYYIIKRI 280 >gi|169351463|ref|ZP_02868401.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552] gi|169291685|gb|EDS73818.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552] Length = 414 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V VSGG DSM LL ++ + + + V++ LR + + + V D C I Sbjct: 15 VVGVSGGCDSMALL----DIMQKKGY---RMVVCHVNYHLRNDSDLDQKTVEDYCKMHDI 67 Query: 83 AHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A V +SK + ARE RY E A N ++ AH DD +E + M+ Q Sbjct: 68 A-CFVKEIDSKLYSKENFQMQARELRYQFYREIANKYNTNEVVLAHHLDDVIENIVMQLQ 126 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R+ + +G+ + D + + RPFL R++ +R++ N+ + +D +N FE Sbjct: 127 RNNTKGYLGIKDVSDV----FGVVVIRPFLEVRKQALRNYCHDYNVFYRDDYTN----FE 178 Query: 201 RVRVRRFVRDIDL 213 R FVR++ L Sbjct: 179 TDFTRDFVRNVTL 191 >gi|150025676|ref|YP_001296502.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86] gi|149772217|emb|CAL43693.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86] Length = 434 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 31/196 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +L+A SGG DSM + LH F K+ ++ I++ HC LR E+ D+ ++V + Sbjct: 21 LLLATSGGIDSM---VMLHL------FQKLNYN-IAIAHCNFQLRGLESFGDQ-QFVQEY 69 Query: 77 CSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S+ +I V + K+ K T + AARE RY E +T N I+TAH DD Sbjct: 70 ASKNKIPAFVTHFDTENFAKDYKLSTQI--AARELRYNWFYELLETENFDFILTAHHADD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G GL G+ T + + N I RP L R +I + + +I W E Sbjct: 128 NLETFIINLTR-----GTGLDGL--TGIPEQNEQIIRPLLPFSRSEIEEYTKENSIQWRE 180 Query: 191 DPSNTDDRFERVRVRR 206 D SN D++ R ++R Sbjct: 181 DSSNASDKYLRNKIRH 196 >gi|126663890|ref|ZP_01734885.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38] gi|126624154|gb|EAZ94847.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38] Length = 219 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 25/191 (13%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVCS- 78 +AVSGG DSM LL F +FS V HC LR E + ++R++ D C Sbjct: 23 IAVSGGIDSMVLL---------HLFQHFQFS-FGVLHCNFKLRGEESDADMRFIHDYCEE 72 Query: 79 ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +LRI + + + AR+ RY E + + + TAH DD LET Sbjct: 73 NNIQLRIGFFETEMIAKELKESIQVTARKLRYNWFYEQMEENDVQFVATAHHLDDSLETF 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G+ G+ T + ++N I RP L RE+I + NI W ED SN Sbjct: 133 LINLSR-----GTGIDGL--TGIPEINDQIIRPLLPFSREEIEQYAKVNNIQWREDASNA 185 Query: 196 DDRFERVRVRR 206 ++ R ++R Sbjct: 186 TTKYLRNKLRH 196 >gi|187735920|ref|YP_001878032.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425972|gb|ACD05251.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 334 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 20/194 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSDV- 76 +L +SGG DSM LL S+LS A V+H LR A++E +RY + + Sbjct: 21 VLAGISGGRDSMALL----SLLS--GMPGCNLVACHVNHQLRPEAEEEEMFVLRYAASLG 74 Query: 77 --CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C R R+ +V S +++ + AAREAR A + A L+ AH +DQ ET Sbjct: 75 IPCVRERV--NVRSMAHTR-GIAIEEAAREARQASFLKWAAGYPGALVALAHHRNDQQET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + G+ GM + L + RP L REDI S+L R+I W ED SN Sbjct: 132 ALLHLCRGAS----GIHGMFPVSTWANGLTVVRPMLDFSREDITSYLEHRHIPWREDSSN 187 Query: 195 TDDRFERVRVRRFV 208 + R +R + Sbjct: 188 QSAEYTRNALRHEI 201 >gi|204927320|ref|ZP_03218522.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323985|gb|EDZ09180.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 430 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPHVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + + + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAYDR 188 >gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7] gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7] Length = 471 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 9/186 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL + + + F + V+H LRE + +E +++ D C Sbjct: 23 LLLAVSGGVDSMVLLDLIQRL---PKVVRPWFGMVHVNHQLREASIEEEKFLVDYCKSAN 79 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I+ W +P G+ AAARE RYA + AT ++T H DDQ+ET+ MR Sbjct: 80 ISFFFKRWPVKEQPTDGVEAAAREFRYAFFRNVLRDQQATHLLTGHHGDDQIETILMRLV 139 Query: 141 RDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + ++G+ + Y L +RP L ++ + + +R++ + ED +N + Sbjct: 140 R--GGQLESIAGIKEQRSFYGSQL--TRPLLPYSKKMLYHYSQERSLVFFEDETNKSLDY 195 Query: 200 ERVRVR 205 R R R Sbjct: 196 TRNRYR 201 >gi|148654498|ref|YP_001274703.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1] gi|148566608|gb|ABQ88753.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1] Length = 682 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 37/232 (15%) Query: 7 ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +SVR +R ++ P ++VAVSGG DS+ LL L ++ ++ + +DH LR Sbjct: 6 DSVRATIRRYRMIAPGKPVVVAVSGGPDSLCLLDVLANLCAEL---MCTLHVVHLDHRLR 62 Query: 64 ET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + E +V++ RL IA +V V + L AA R ARY L++ A TI Sbjct: 63 GAQSAAEAAFVAETAERLGIAATVEAVDVRALAVERNLNLHAAGRLARYRLLARVALTIG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-------------- 164 A + TAH DDQ ETV + R +G L G+ + + W Sbjct: 123 AQAVATAHHADDQAETVLLHLVRGAGVEG--LRGIRPVVAW--GEWRVIGDMDDDDLAAL 178 Query: 165 --------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + RP L R DI ++ ++ + DPSN D R+ R R+R+ V Sbjct: 179 PKDEHAPRLIRPLLHVARADIETYCVEHGLVPRRDPSNVDRRYLRTRIRQDV 230 >gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica] gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica] Length = 426 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 33/209 (15%) Query: 22 ILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGGSDSM L +I+ LS+++ +A +VDH +R + E + V ++ SR Sbjct: 12 LALAVSGGSDSMALAYMISQTPGLSEKT------TAYTVDHGVRSESSSEAQNVHEIVSR 65 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I H ++ L + R+ARY+ + + ++TAHT DD +ET +R Sbjct: 66 LGINHRILKLDALNDTKEL--SMRQARYSKLIAAMNDDGVSTVVTAHTQDDCIETFVVRM 123 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLW--------------------ISRPFLRCRREDIRS 179 R GL+G+ + ++ W + RP L + +R+ Sbjct: 124 LRGSGL--FGLAGIQPRVSFNPYTWGGGGIALKQHSRTELASGWKLMRPLLGLTKSHLRN 181 Query: 180 FLLQRNISWCEDPSNTD-DRFERVRVRRF 207 L++ NI W EDP+N + + ER VR+ Sbjct: 182 VLVKNNIPWFEDPTNQNVEIAERNLVRKM 210 >gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168] gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168] Length = 468 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV VSGG DS+ LL L V + +G +K +DH R+ A E RYVS++ + Sbjct: 23 VLVGVSGGPDSLTLLDMLVRVKDE--YG-LKLVVFHLDHKFRQEAAREARYVSNITNNYG 79 Query: 82 IAHSVVSWKNSKPQTGLM--------AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + GLM AAR+ R+ L+ + ++N I AH DD +E Sbjct: 80 LKCIIEEFD----VPGLMNDEGLSPEEAARKVRFNLMIKWVNSLNLNKIAVAHNKDDLVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 TV++ R G GL G+ D + + + P L R++I + +RN++ D Sbjct: 136 TVFLHMFR-----GTGLKGLTGIDPVSRIGGVEVIHPLLNIYRQEIMDYCQRRNLNPVYD 190 Query: 192 PSNTDDRFERVRVRRFV 208 P+N + + R ++R + Sbjct: 191 PTNQETIYTRNKIRHHI 207 >gi|239621577|ref|ZP_04664608.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515452|gb|EEQ55319.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 388 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ A+ VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V +N+ Q GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + + +RP L R++ + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215 >gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98] Length = 476 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 13/206 (6%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66 RF + V H I+V VSGG DS+ LL L L R + VDH R + + Sbjct: 11 RFAKQHGVLEEHSTIVVGVSGGPDSLALLYYL---LEKREAKNLTIVVAHVDHMFRGDES 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLI 122 +++++V ++C L I + + Q G+ A AARE RYA + + +A + Sbjct: 68 YEDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLERIMRKYDAGYV 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 H DDQ+ET+ MR R G +G+ + N ++ RP L +E+I + Sbjct: 128 ALGHHGDDQVETILMRLVR--GSTPQGYAGIAVKRPFH-NGYLIRPLLAVTKEEILDYCD 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 Q I D SN + + R R+R++V Sbjct: 185 QLGIMPRIDSSNKKEVYTRNRLRKYV 210 >gi|218688063|ref|YP_002396275.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a] gi|331681573|ref|ZP_08382210.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H299] gi|218425627|emb|CAR06413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a] gi|315300660|gb|EFU59887.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 16-3] gi|331081794|gb|EGI52955.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H299] Length = 437 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|291528701|emb|CBK94287.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium rectale M104/1] Length = 501 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 60/328 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 +LVA+SGG+DS+ LL+ L+ + + ++ F+ A+ V+H +R ++++ R+ SD+C Sbjct: 21 VLVALSGGADSVCLLLVLNEI-KRQCTDELDFALEAVHVEHGIRGAESREDARFASDLCE 79 Query: 79 RLRI---AHSV-VSWKNSKPQTGLMAAAREARYALISEHA-------------KTINA-- 119 RL I HSV V + GL AAR RY E A K N+ Sbjct: 80 RLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEEEAGRYPCETAYAADQKQGNSRQ 139 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AH +D ETV + R KG L+GM + + +I RP L R I Sbjct: 140 AVVAVAHHMEDNAETVLFQMLRGSGAKG--LAGMHPVSVKNGVTYI-RPLLSATRAQIEE 196 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLHALYLK-MKKFQDL 226 +L + ++ D +NTD + R ++R R + I+ A L M F + Sbjct: 197 YLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINESAGQLAVMNDFYEQ 256 Query: 227 RVKV---------NNAVAMLIPKYLTVH--MRSIIA------ISQDILNIDSTLLFYLLR 269 ++K V + I ++ ++H ++S +A S + +I ST + L++ Sbjct: 257 QLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRLKDITSTHIGALVK 316 Query: 270 VSAAICGGQISLP----GYRSMERVMLF 293 ++ G +I+LP +S V+LF Sbjct: 317 LAGQQSGRKINLPYGIIAEKSFGEVILF 344 >gi|317482117|ref|ZP_07941141.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA] gi|291516361|emb|CBK69977.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Bifidobacterium longum subsp. longum F8] gi|316916476|gb|EFV37874.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA] Length = 388 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ + VDH L+E ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V +N+ Q GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + + +RP L R++ + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215 >gi|168823094|ref|ZP_02835094.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340604|gb|EDZ27368.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084490|emb|CBY94283.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 430 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC+R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCARWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|323975644|gb|EGB70740.1| PP-loop family protein [Escherichia coli TW10509] Length = 431 Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|303231002|ref|ZP_07317745.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6] gi|302514384|gb|EFL56383.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6] Length = 320 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 10/194 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LVA SGG DSM LL L + R + ++DH +R + E++ V C++ Sbjct: 16 ARVLVACSGGPDSMVLLDVLQYIKVHRK-AQWTIGVTTMDHSIRRESPSELQMVQSYCNK 74 Query: 80 LR-----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + + + ++ L R RY +E A+ + I+TAH DDQ ET Sbjct: 75 RNLPFWGIKKDIPTIARERKES-LETVGRCERYKWFNELAEREHYEYIVTAHHKDDQGET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R KG ++GM I +D + I RP L +++I + ++I +C D SN Sbjct: 134 ILAHILRGSGIKG--ITGM-SVISHDYAVPIVRPLLAVTKDEILEYARLQDIEYCLDASN 190 Query: 195 TDDRFERVRVRRFV 208 D ++ R R+R V Sbjct: 191 EDVKYNRNRIRHDV 204 >gi|324008219|gb|EGB77438.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 57-2] Length = 432 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTPLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|237729494|ref|ZP_04559975.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2] gi|226909223|gb|EEH95141.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2] Length = 431 Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 28/314 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILVA SGG DS + LH ++ R+ ++ AI + H L A V++ VC + Sbjct: 16 ILVAFSGGLDST---VLLHQLVQWRAQHPEVALRAIHIHHGLSPHADSWVQHCESVCMQW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ V G+ A AR ARY ++ + ++MTA DDQ ET + + Sbjct: 73 QVPLVVERVHLEDDGLGIEAQARRARYQAFAQ--TLLPGEVLMTAQHLDDQCETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + I RP L RE + ++ Q + W ED SN DD ++ Sbjct: 131 RGSGPAG--LSAMGENTPFAGTQLI-RPLLAQTREVLETWARQHELCWIEDESNQDDTYD 187 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQ 254 R F+R L L +++ V + A+ L+ + LT + I Sbjct: 188 ----RNFLR---LRVTPLLQQRWPHFAQAVARSAALCAEQESLLDELLTSDLADCITAHG 240 Query: 255 DILNIDSTLLFYLLRVSA---AICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 +L + ++ + R + + G +P +ER+ + + C +G Sbjct: 241 TLLLVPLMMMSDVRRAALLRRWLAGLNAPMPSRDGLERIWQEVALAREDASPCFRLGEYE 300 Query: 309 IDRRANFLWITRAV 322 + R + LW ++V Sbjct: 301 VRRYQSQLWWVKSV 314 >gi|330836936|ref|YP_004411577.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374] gi|329748839|gb|AEC02195.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374] Length = 499 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 21/204 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD 68 F RS I+VA SGG+DS LL L ++ S A+ V+H LR E Sbjct: 41 FSSRSWNPREGIVVAFSGGADSSALLYLLSRLVPASSL-----VAVYVNHRLRPAEELAG 95 Query: 69 EVRYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ + + C++L I V+S + ++ G+ AAAR RY ++ + Sbjct: 96 EIAHNTCFCAKLGIEIKIVDSGEDVISNRAAQEGDGIEAAARAVRYEILEAERARLGFPW 155 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I T HT DDQ+ET+ R R G S + +N + RP L +RS L Sbjct: 156 IATGHTSDDQMETILHRLLR-------GCSVAALRGIEPVNGSVIRPLLDVSGTVLRSLL 208 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + +SW ED +N D + R R+R Sbjct: 209 KDKGLSWSEDSTNAMDDYTRNRIR 232 >gi|300902007|ref|ZP_07120034.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1] gi|301305324|ref|ZP_07211420.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1] gi|300405893|gb|EFJ89431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1] gi|300839429|gb|EFK67189.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1] gi|315254990|gb|EFU34958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 85-1] Length = 432 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTLRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1] gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1] Length = 463 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 88/202 (43%), Gaps = 17/202 (8%) Query: 10 RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 R L+ P +L+AVSGG DS+ LL+ H +K S +H LR A D Sbjct: 8 RLHRHRLIEPQQRVLIAVSGGIDSVSLLLLFHQAAPQMD---LKLSVAHYNHGLRGEAAD 64 Query: 69 EVR-YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 E +V+ + RL + + W +P T M AAR RY + AK A I Sbjct: 65 EDEAFVAALAGRLGLPCYRERAPQGWWTREPGTK-MEAARRLRYDFLERVAKAAGADRIA 123 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DDQ+ETV R G GL G+ + +I RP L RR ++ +FL Sbjct: 124 LGHHADDQVETVLFHFLR-----GSGLRGLAGMPIRR-GPYI-RPLLAFRRAELAAFLQA 176 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 W D SN + R R+R Sbjct: 177 ERQEWRHDASNDSTLYTRNRIR 198 >gi|90407914|ref|ZP_01216089.1| mesJ protein [Psychromonas sp. CNPT3] gi|90311005|gb|EAS39115.1| mesJ protein [Psychromonas sp. CNPT3] Length = 441 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 18/189 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL + S GK+ A V H L A D + + S +C L + Sbjct: 26 IALSGGMDSVVLL----HLFSRLHNGKVM--AHHVHHGLSAHADDWLLFCSTLCKALNVD 79 Query: 84 HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K ++ L A ARE RY + E+A T ++TAH DDQLE++ + +R Sbjct: 80 FCATRVHLDKKNRSSLEAVAREHRYKALQENASV--TTCLVTAHHQDDQLESILLALKR- 136 Query: 143 YAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL+G+ +L L + RP L R+ I + +++W ED SN D RF Sbjct: 137 ----GAGLTGL-QGVLATQKLPKGMLIRPLLDVSRQQIEDYAALFSLAWIEDESNQDQRF 191 Query: 200 ERVRVRRFV 208 +R +R + Sbjct: 192 DRNFIRHSI 200 >gi|253681327|ref|ZP_04862125.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873] gi|253562565|gb|EES92016.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873] Length = 462 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VAVSGG DS+ LL L+ + R I A ++HCLR E KDE YV C Sbjct: 21 VVVAVSGGPDSICLLHILYKL---REKIGISIVAAHINHCLRGEEADKDE-EYVRKFCEN 76 Query: 80 LRIAHSVVS---WKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I V K SK + A RE RY SE + A I AH +DQ ET+ Sbjct: 77 LNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNVRANKIAVAHNANDQAETI 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ N+++ RP + R++I + N++ D +N Sbjct: 137 LMRMLR-----GTGLEGLIGIRAVRDNIFV-RPIIDITRDEIEDYCYVNNLNPRIDKTNL 190 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 191 ENIYTRNKIR 200 >gi|168235017|ref|ZP_02660075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738177|ref|YP_002113259.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254789047|sp|B4TYE9|TILS_SALSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194713679|gb|ACF92900.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291746|gb|EDY31096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 430 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVKRVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + + + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAYDR 188 >gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16] gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16] Length = 464 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 14/211 (6%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ R L A ++V VSGG DS+ LH + S R K++ A VDH Sbjct: 2 VDKVRAFIDRHRLLTEGATVIVGVSGGPDSL---ALLHLLSSLRDEWKLQLVAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMA--AAREARYALISEHAKTI 117 R +++E+ +V C+ RI V Q TGL A AAR RY +E K Sbjct: 59 RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R K G +G+ + + I RPFL R +I Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGSYLI-RPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + ++ DPSN D + R R R + Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHI 206 >gi|152995318|ref|YP_001340153.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1] gi|150836242|gb|ABR70218.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1] Length = 436 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 84/186 (45%), Gaps = 8/186 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V SGG DS LL AL + ++ K K + V H L A D + + +C+ L Sbjct: 33 VWVGFSGGVDSHVLLHALVNQITLAQ--KQKLFVLHVHHGLSANADDWLLHCETICNNLG 90 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + Q + AAR ARY A +I+ AH DQ ET+ R R Sbjct: 91 VTFKAEK-VQLESQASIEDAARNARYQAF--QANMGEGDVILLAHHAGDQAETLLFRLLR 147 Query: 142 DYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G GLSGM + L + + RP L ++DI + +Q + W D SN D+RF Sbjct: 148 --GTGGKGLSGMPNERWLANGKARLIRPLLSVSKQDIEGYAIQHKLDWIHDESNFDERFT 205 Query: 201 RVRVRR 206 R +RR Sbjct: 206 RNFLRR 211 >gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana] Length = 614 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 25/212 (11%) Query: 24 VAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVS 74 + VSGG DSM L + L V +++ G I AI VDH LR+ +KDE V Sbjct: 59 LGVSGGPDSMALCVLTAKWKTEGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAELVC 116 Query: 75 DVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 S++ I + S W + +P+ G L AARE RY +IS +++ AH DDQ Sbjct: 117 SRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQ 176 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRSF 180 E +R R G+ + I + + ++ + RP L +ED+ Sbjct: 177 AELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKI 236 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 W EDP+N F R R+R + +++ Sbjct: 237 CQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLE 268 >gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170] gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170] Length = 462 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 76/179 (42%), Gaps = 6/179 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ LL ++R + +A+ DH LR + E R V L Sbjct: 34 IAVGVSGGVDSLTLLAFAARWAAERGG---RCTAVCFDHGLRAASAGEARLVETTARSLG 90 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V+ W P +G+ AAR AR + ++ AH DDQ ETV R R Sbjct: 91 AEAVVLRWAGPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLAHHRDDQAETVLQRLGR 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G L+ M + I RPFL R I + + + W EDPSN D ++ Sbjct: 151 GSGADG--LAAMA-ALSSRGEARILRPFLEVPRAAIEASARRIGLVWAEDPSNHDPHYD 206 >gi|209745668|gb|ACI71141.1| cell cycle protein MesJ [Escherichia coli] gi|326345091|gb|EGD68834.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1125] Length = 431 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G ++ AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G LS M + + I RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFER 201 N DD ++R Sbjct: 180 NQDDSYDR 187 >gi|71281989|ref|YP_268314.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H] gi|71147729|gb|AAZ28202.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H] Length = 462 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL AL + ++ + + V+H L A+ + C +L Sbjct: 24 LIVAYSGGIDSQVLLHALVQLKQNKIINN-EITVCHVNHGLSGNAERWQKLAEQECIKLS 82 Query: 82 IAHSVVSWKN--SKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + +V N SK Q L A AR+ARY AL S K ++++T H DDQ ET + Sbjct: 83 V-NLIVKRVNVRSKAQQSLEALARDARYNALKSLREK---KSVVLTGHHSDDQSETFLLA 138 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG LS M D +L + RP L R++I ++ +SW ED SN D Sbjct: 139 LKRGAGLKG--LSAMSVQTQLDQHLLV-RPLLNVARQEIENYAENHQLSWVEDESNLDTC 195 Query: 199 FERVRVRR 206 F+R +R+ Sbjct: 196 FDRNFIRQ 203 >gi|16759227|ref|NP_454844.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140776|ref|NP_804118.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161205|ref|ZP_03346915.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416904|ref|ZP_03350048.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428146|ref|ZP_03360896.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612494|ref|ZP_03370320.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646227|ref|ZP_03376280.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|61216696|sp|Q8Z996|TILS_SALTI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25325274|pir||AG0531 cell cycle protein MesJ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501518|emb|CAD08695.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhi] gi|29136400|gb|AAO67967.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|33356621|gb|AAQ16558.1| putative cell cycle protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 430 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|58582920|ref|YP_201936.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427514|gb|AAW76551.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 434 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 138/345 (40%), Gaps = 39/345 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134 C L++ +V + + GL AAAR AR+ A T+ A +T AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125 Query: 135 VYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +R+ R A GL+ M D LW RP L R D+ ++ L + + W EDPS Sbjct: 126 FLLRALR--ASGPEGLAAMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPS 181 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D R + R F+R L L + + D + A L + ++ +A+ Sbjct: 182 NADPRHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALL 233 Query: 254 QDILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRG 300 + L + LR +A + G ++ER + + ++ Sbjct: 234 PSVRTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQA 293 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 C + +V + R L++ R PT + WDG Q Sbjct: 294 CFAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333 >gi|322616060|gb|EFY12977.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620843|gb|EFY17703.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623806|gb|EFY20643.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627254|gb|EFY24045.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630561|gb|EFY27325.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638221|gb|EFY34922.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640706|gb|EFY37357.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645510|gb|EFY42037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648197|gb|EFY44664.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657147|gb|EFY53430.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657517|gb|EFY53789.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663837|gb|EFY60037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666670|gb|EFY62848.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672172|gb|EFY68284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676517|gb|EFY72588.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679391|gb|EFY75436.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686282|gb|EFY82266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193462|gb|EFZ78670.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197516|gb|EFZ82651.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201215|gb|EFZ86284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209610|gb|EFZ94543.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212138|gb|EFZ96962.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216443|gb|EGA01169.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223367|gb|EGA07702.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225928|gb|EGA10148.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228531|gb|EGA12660.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236856|gb|EGA20932.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239644|gb|EGA23691.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242309|gb|EGA26338.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249971|gb|EGA33867.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252401|gb|EGA36252.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255684|gb|EGA39437.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262879|gb|EGA46429.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265365|gb|EGA48861.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271848|gb|EGA55266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 430 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|33151295|ref|NP_872648.1| cell-cycle protein MesJ [Haemophilus ducreyi 35000HP] gi|61216603|sp|Q7VPN7|TILS_HAEDU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33147515|gb|AAP95037.1| probable cell-cycle protein MesJ [Haemophilus ducreyi 35000HP] Length = 428 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 17/206 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++L+++SGG DS+ LL L R+ ++ AI + H L A + + +C + Sbjct: 19 NVLLSLSGGIDSVVLL-----DLFSRTTTPLR--AIYIHHGLSANADNWADFCEALCKQY 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ TG+ A AR ARY I+EH + ++ TAH +DQ ET + + Sbjct: 72 NIPF-ILQKVTVDKSTGIEAGARTARYKAIAEHIQA--NEILATAHHLNDQAETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N+ I RP L +++I+ + Q+ + W ED SN ++ ++ Sbjct: 129 RGSGVKG--LSAM-QIVSHRQNMTIFRPLLSTTKKEIQQYAKQQQLCWIEDESNQNNHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDL 226 R F+R+ L L + +F + Sbjct: 186 ----RNFLRNQILPLLLQRWPQFNQM 207 >gi|289830090|ref|ZP_06547530.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 431 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 17 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 74 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 75 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 133 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 189 >gi|168464199|ref|ZP_02698102.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632620|gb|EDX51074.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 430 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|294085869|ref|YP_003552629.1| putative ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Candidatus Puniceispirillum marinum IMCC1322] Length = 444 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%) Query: 25 AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 A+SGG+DS L L++ +V S ++ AI VDH +RE A E V+ + I Sbjct: 34 ALSGGADSTALCLLMSRFAVASGKAH-----RAIIVDHGIRENAGAEAARVAARMQKFGI 88 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + P+TG+ A AR R+ ++ HA+ NA L++ H DQ ET+ MR +D Sbjct: 89 NVKIEKVSDKAPETGIQAWARRQRFEIMLAHARRDNAALLV-GHHAGDQAETIAMRLGKD 147 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +GL+GM T + + I RP L + + + +DPSN D RFER+ Sbjct: 148 SGL--VGLAGMKRTS-WRAGVPIGRPLLDWPADRMADICRIFACEFEDDPSNLDRRFERI 204 Query: 203 RVRRFV 208 R+R+F+ Sbjct: 205 RLRQFM 210 >gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 485 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 93/196 (47%), Gaps = 20/196 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 P H+ AVSGG+DSM LL L ++ + FG + SA V+H LR ETA + +V C Sbjct: 25 PLHLAAAVSGGADSMALLRILLALQPE--FGFV-LSACHVNHGLRGETADRDEAFVRAEC 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE-HAKTINATLIMTAHTFDD 130 +RL + V + GL AR RYA + + I+ + TAHT +D Sbjct: 82 ARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFARLCGEGIDD--VATAHTAND 139 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET+ +R R G GL G I ++ RP L R+D SF +W Sbjct: 140 QAETLLLRLAR-----GTGLHGAAG-IRPKRGCYL-RPLLALTRQDTESFCRAAGQAWVT 192 Query: 191 DPSNTDDRFERVRVRR 206 D +N D + R RVRR Sbjct: 193 DETNATDAYARNRVRR 208 >gi|200387429|ref|ZP_03214041.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604527|gb|EDZ03072.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 430 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42] gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42] Length = 335 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 26/213 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG+DS LL+A + R G++ A V H L+ A ++ +C RL Sbjct: 18 LAVALSGGADSTALLLAC----AARWPGQV--VAFHVHHGLQAAADGFEQHCVALCERLG 71 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLIMTAHTFDDQLET 134 I V V +++ Q+ AAR+ARY A+ T+ + H DDQ+ET Sbjct: 72 IPLWVRRVDARHAAGQSP-EDAARQARYKAFEALALDCQAQAAIKTIALAQHA-DDQVET 129 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + R G G++G+ + RP LR D+R++L+ R W EDP Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWQRAGMDWCRPLLRVAGADVRAWLVARGERWVEDP 184 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +N D+RF R R+RR + L AL +F+D Sbjct: 185 TNADERFTRNRIRRQL----LPALQQAFPQFRD 213 >gi|32034944|ref|ZP_00135035.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209005|ref|YP_001054230.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae L20] gi|303250988|ref|ZP_07337176.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253197|ref|ZP_07535073.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|226695530|sp|A3N2I9|TILS_ACTP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|126097797|gb|ABN74625.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302650145|gb|EFL80313.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859341|gb|EFM91378.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 419 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 + R + L++T + P P + T+ DG + Q+L DS+I + + Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358 Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 P + Q L+ K+ GKP+ + + +PV Sbjct: 359 PKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVPV 399 >gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 455 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I VAVSGGSDSM LL + + + S I V+H +R +++K + +V + C +L Sbjct: 27 IAVAVSGGSDSMALLWLMLNCWPN------DISVIHVEHGIRGDSSKADACFVKEHCKKL 80 Query: 81 RIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I ++S + L AAR R+ ++ A+ I + + H DD +ET ++ Sbjct: 81 DIPCFILSRDVPVEAMKGESLEQAARRIRHEALASKAEEIGSDFVALGHNSDDTVETFFL 140 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ G+ + D + RP L R+++R L + W ED SN + Sbjct: 141 NLARGSGAYGLAGIPEVRDRFV--------RPVLEVSRDELRELLKEVGWGWVEDESNQE 192 Query: 197 DRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227 D + R R+R R R + H L L +++ DLR Sbjct: 193 DLYLRNRIRHEVLPLLENRINRGVRRHVLSL-IEEMSDLR 231 >gi|194435002|ref|ZP_03067243.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012] gi|194416738|gb|EDX32866.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012] gi|320180904|gb|EFW55826.1| tRNA(Ile)-lysidine synthetase [Shigella boydii ATCC 9905] gi|332097611|gb|EGJ02588.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 155-74] Length = 432 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLLGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|62178806|ref|YP_215223.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484785|sp|Q57T19|TILS_SALCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62126439|gb|AAX64142.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713260|gb|EFZ04831.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 430 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2] gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2] Length = 464 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 14/211 (6%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ R L A ++V VSGG DS+ LH + S R K++ A VDH Sbjct: 2 VDKVRAFIDRHRLLTEGATVIVGVSGGPDSL---ALLHLLSSLRDEWKLQLVAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMA--AAREARYALISEHAKTI 117 R +++E+ +V C+ RI V Q TGL A AAR RY +E K Sbjct: 59 RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R K G +G+ + + I RPFL R +I Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGSYLI-RPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + ++ DPSN D + R R R + Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHI 206 >gi|16763626|ref|NP_459241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990123|ref|ZP_02571223.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264644|ref|ZP_02686617.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|61216700|sp|Q8ZRN5|TILS_SALTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|16418741|gb|AAL19200.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331423|gb|EDZ18187.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205346914|gb|EDZ33545.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267991927|gb|ACY86812.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911206|dbj|BAJ35180.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225169|gb|EFX50229.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128556|gb|ADX15986.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987188|gb|AEF06171.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 430 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|15799870|ref|NP_285882.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 EDL933] gi|15829444|ref|NP_308217.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. Sakai] gi|168752171|ref|ZP_02777193.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113] gi|168758712|ref|ZP_02783719.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401] gi|168764949|ref|ZP_02789956.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501] gi|168769956|ref|ZP_02794963.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486] gi|168777704|ref|ZP_02802711.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196] gi|168782081|ref|ZP_02807088.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076] gi|168789298|ref|ZP_02814305.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869] gi|168802467|ref|ZP_02827474.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508] gi|195939884|ref|ZP_03085266.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. EC4024] gi|208806040|ref|ZP_03248377.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206] gi|208812463|ref|ZP_03253792.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045] gi|208818383|ref|ZP_03258703.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042] gi|209399704|ref|YP_002268796.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115] gi|217324422|ref|ZP_03440506.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588] gi|254791321|ref|YP_003076158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. TW14359] gi|261226942|ref|ZP_05941223.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261255346|ref|ZP_05947879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. FRIK966] gi|61216683|sp|Q8X8W8|TILS_ECO57 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12512916|gb|AAG54490.1|AE005194_11 cell cycle protein [Escherichia coli O157:H7 str. EDL933] gi|13359646|dbj|BAB33613.1| cell cycle protein MesJ [Escherichia coli O157:H7 str. Sakai] gi|187767122|gb|EDU30966.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196] gi|188013918|gb|EDU52040.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113] gi|189000414|gb|EDU69400.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076] gi|189354503|gb|EDU72922.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401] gi|189361024|gb|EDU79443.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486] gi|189365138|gb|EDU83554.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501] gi|189371100|gb|EDU89516.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869] gi|189375538|gb|EDU93954.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508] gi|208725841|gb|EDZ75442.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206] gi|208733740|gb|EDZ82427.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045] gi|208738506|gb|EDZ86188.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042] gi|209161104|gb|ACI38537.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115] gi|209745666|gb|ACI71140.1| cell cycle protein MesJ [Escherichia coli] gi|209745672|gb|ACI71143.1| cell cycle protein MesJ [Escherichia coli] gi|217320643|gb|EEC29067.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588] gi|254590721|gb|ACT70082.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. TW14359] gi|320190286|gb|EFW64936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. EC1212] gi|326339757|gb|EGD63565.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1044] Length = 431 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G ++ AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G LS M + + I RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFER 201 N DD ++R Sbjct: 180 NQDDSYDR 187 >gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925] gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925] Length = 467 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VAVSGG DS+ LL L+ + + I A ++HCLR E KDE YV C Sbjct: 26 VVVAVSGGPDSICLLHILYKLKEELG---ITLVAAHINHCLRGEEADKDE-EYVRKFCEN 81 Query: 80 LRIAHSVVS---WKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I V K SK + A RE RY SE + A I AH +DQ ET+ Sbjct: 82 LNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLNKVGANKIAVAHNANDQAETI 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ N+++ RP + R++I ++ N++ D +N Sbjct: 142 LMRMLR-----GTGLEGLVGIRAVRDNIFL-RPIIDITRDEIENYCDVNNLNPRIDKTNL 195 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 196 ENIYTRNKIR 205 >gi|197249380|ref|YP_002145241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254789042|sp|B5F8V0|TILS_SALA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|197213083|gb|ACH50480.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 430 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|241758884|ref|ZP_04756997.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114] gi|241321092|gb|EER57305.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114] Length = 441 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 143/327 (43%), Gaps = 42/327 (12%) Query: 19 PAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H +V V SGG DS+ LL LH R F A+ V H L A ++ D Sbjct: 21 PSHTVVEVGLSGGLDSVVLLHLLHRT---REFHHFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L + V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CRGLNVTLRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + + R G GL GM ++ DLN + I RP L R+++ + Q +S+ ED S Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPLLAFSRQELAEYAQQWGLSFVEDES 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTV 244 N D + +R ++R+ L ++ F+ ++ N ++ +Y + Sbjct: 189 NEDSSY----LRNWMRNQALPKWQQRIPNFEQ-QICTNVRLLQEDLQLLDELIESEYQRI 243 Query: 245 HMRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 I +IS Q + LL+Y LR SLP Y S+ L++ + Sbjct: 244 SPNGIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQ 297 Query: 302 VSI--GRVVIDRRANFLWITRAVRNLP 326 +++ G++V+ R F+ + LP Sbjct: 298 LNLPDGKLVVYRDKLFVCQESEFQKLP 324 >gi|227115135|ref|ZP_03828791.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 455 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS + LH +++ R ++ A + H L A + C R + Sbjct: 29 ILLAYSGGLDSS---VLLHLLVALRQRSELPIRAAYIHHGLNPLADSWAEHCRQQCERWQ 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + +S G+ AAAR ARY + H + + ++TA DDQ ET + +R Sbjct: 86 VPFTSLSVTVEAQNGGIEAAARTARYQALRAHLQ--DGETLLTAQHLDDQSETFLLALKR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ T+ + + RP L R + ++ + + W ED SN D+RF+R Sbjct: 144 GSGPAGLSAMAAQSTLGHHR---LVRPLLGISRLQLEAYAQRNQLDWIEDDSNQDERFDR 200 Query: 202 VRVRRFV 208 +RR + Sbjct: 201 NFLRRQI 207 >gi|320639994|gb|EFX09579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. G5101] Length = 431 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G ++ AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G LS M + + I RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFER 201 N DD ++R Sbjct: 180 NQDDSYDR 187 >gi|297582401|ref|YP_003698181.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10] gi|297140858|gb|ADH97615.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10] Length = 475 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 20/195 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 H+LVAVSGG DSM LL LH R+ I SA+ H LR E+A + V+ C Sbjct: 20 HLLVAVSGGVDSMVLLHLLHE---RRTRLSITLSAVHAHHHLRRESADRDAELVASFCRE 76 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I H V + + A AR+ RY A ++TAH DDQ+ETV Sbjct: 77 LAIPFHLVHLSVEEERKLRNGSVQAVARDLRYEAFRHVMTETGANRLVTAHHGDDQIETV 136 Query: 136 YMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++ R+ A+ G G+ + T++ RP L + + + I + ED Sbjct: 137 LLQLLRNTAQGGSGMRALRPIEGGTLI--------RPLLDTEKASLYRYAKDSGIPFRED 188 Query: 192 PSNTDDRFERVRVRR 206 SN + R R+R+ Sbjct: 189 ESNDSRHYRRNRIRQ 203 >gi|330896077|gb|EGH28298.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 286 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|288554678|ref|YP_003426613.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4] gi|288545838|gb|ADC49721.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4] Length = 465 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 24/217 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 + VAVSGG DSM LL H ++ R I+ A+ V+H LR E+ DE +YV C+ Sbjct: 21 VFVAVSGGPDSMALL---HYLIKRREMYGIEVEAVHVNHQLRGAESVDDE-QYVRKFCTE 76 Query: 80 LRIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I H+ V S+ + G AA E RY E + + I TAH DDQ ET+ Sbjct: 77 HNIPLHTKKMDVQTFASQNKMGTQKAASELRYQWFDEWLENRPHSCIATAHHGDDQTETI 136 Query: 136 YM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M R G+ + + N ++ RPFL +E+I + + I+ D Sbjct: 137 LMTMVRGGNLLVPSGINVKRILQ------NGFVIRPFLGITKEEIEHYCKREGITPRIDS 190 Query: 193 SNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQD 225 SN ++ R R R+ F++ + ++++ M++FQ+ Sbjct: 191 SNHSMKYTRNRYRQQIMPFIKSENP-SVHIHMQRFQE 226 >gi|194443631|ref|YP_002039476.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254789045|sp|B4SV18|TILS_SALNS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194402294|gb|ACF62516.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 430 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|161612610|ref|YP_001586575.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|254789046|sp|A9N0U0|TILS_SALPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161361974|gb|ABX65742.1| hypothetical protein SPAB_00301 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 430 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|331645331|ref|ZP_08346442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M605] gi|281177413|dbj|BAI53743.1| cell cycle protein [Escherichia coli SE15] gi|330910038|gb|EGH38548.1| tRNA(Ile)-lysidine synthetase [Escherichia coli AA86] gi|331046088|gb|EGI18207.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M605] Length = 437 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + Q ++ W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWARQYDLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|254468050|ref|ZP_05081456.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13] gi|207086860|gb|EDZ64143.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13] Length = 441 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 13/199 (6%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F + L H+LV VSGG DS+ + H++ RS + I VDH L +K Sbjct: 12 FLKQKLKKNCHLLVGVSGGIDSV---VLGHTLSQLRSLHPFDLTFIYVDHQLHPESKQWA 68 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + +L I + + + G AAR+ RY +H K I L++ H D Sbjct: 69 NTVKQLAKKLSIEYICEKVTIDQDLKLGTEGAARKHRYQAFQKHQKDI---LVLAQHE-D 124 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQLET+ ++ R G G G+ Y L I RP L + I + + + + Sbjct: 125 DQLETLLLQLAR-----GAGSKGLSCMPEYHEKLKIWRPLLGVSKNLIYRYQQEHKLKFI 179 Query: 190 EDPSNTDDRFERVRVRRFV 208 ED SN D++++R +R V Sbjct: 180 EDSSNKDNKYDRNYLRNKV 198 >gi|188577760|ref|YP_001914689.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522212|gb|ACD60157.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 434 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 138/345 (40%), Gaps = 39/345 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134 C L++ +V + + GL AAAR AR+ A T+ A +T AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125 Query: 135 VYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +R+ R A GL+ M D LW RP L R D+ ++ L + + W EDPS Sbjct: 126 FLLRALR--ASGPEGLAAMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPS 181 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D R + R F+R L L + + D + A L + ++ +A+ Sbjct: 182 NADPRHD----RNFLRSQVLPLLQQRWPQAVDALAR----SAQLSADASALLLQQDMALL 233 Query: 254 QDILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRG 300 + L + LR +A + G ++ER + + ++ Sbjct: 234 PSVCTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQA 293 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 C + +V + R L++ R PT + WDG Q Sbjct: 294 CFAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333 >gi|110640407|ref|YP_668135.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 536] gi|191172763|ref|ZP_03034300.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11] gi|110341999|gb|ABG68236.1| putative cell cycle protein MesJ [Escherichia coli 536] gi|190906913|gb|EDV66515.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11] Length = 437 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|330975382|gb|EGH75448.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 445 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|88857960|ref|ZP_01132602.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas tunicata D2] gi|88819577|gb|EAR29390.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas tunicata D2] Length = 428 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA+SGG DS+ + LH V + ++ +K A+ V+H + A + +C+ L Sbjct: 21 LTVALSGGVDSV---VLLHLVATYQALNPDVKVQAVHVNHGISPHAHAWQDFCQRLCAEL 77 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I + +S + K + L A ARE RY AL+S + +++ H DDQ+ET +++ Sbjct: 78 TIPFNAISVTIDKKNRQSLEAVARELRYQALVS--VTQVQDVILLGQHQ-DDQVETFFLQ 134 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +R G+ GLS M +T ++ + + RP L R I +F Q N+S ED SN+D Sbjct: 135 LKRG---SGLSGLSAMANTSEFEGRILV-RPLLETSRASIEAFCQQFNLSHIEDESNSDV 190 Query: 198 RFERVRVRR 206 +++R +R Sbjct: 191 KYDRNYLRH 199 >gi|330936799|gb|EGH40956.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 445 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|91209258|ref|YP_539244.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UTI89] gi|117622473|ref|YP_851386.1| tRNA(Ile)-lysidine synthetase [Escherichia coli APEC O1] gi|218557129|ref|YP_002390042.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88] gi|237704347|ref|ZP_04534828.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA] gi|331661259|ref|ZP_08362191.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA206] gi|91070832|gb|ABE05713.1| putative cell cycle protein MesJ [Escherichia coli UTI89] gi|115511597|gb|ABI99671.1| putative cell cycle protein MesJ [Escherichia coli APEC O1] gi|218363898|emb|CAR01563.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88] gi|226902259|gb|EEH88518.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA] gi|294494175|gb|ADE92931.1| tRNA(Ile)-lysidine synthase [Escherichia coli IHE3034] gi|307629764|gb|ADN74068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UM146] gi|315285280|gb|EFU44725.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 110-3] gi|323950813|gb|EGB46690.1| PP-loop family protein [Escherichia coli H252] gi|323955070|gb|EGB50846.1| PP-loop family protein [Escherichia coli H263] gi|331052301|gb|EGI24340.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA206] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|333011028|gb|EGK30447.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-272] gi|333021823|gb|EGK41072.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-227] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|300990435|ref|ZP_07179203.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1] gi|300305735|gb|EFJ60255.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1] Length = 437 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|323495345|ref|ZP_08100423.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546] gi|323310416|gb|EGA63602.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546] Length = 439 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ +SGG DS +L + +R +++ AI V H L A C L Sbjct: 21 LVLGLSGGLDSRVMLELMAEYCHNR---QLECLAIHVHHGLSANADQWAMQCQHWCDSLG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + L +AREARY I+ H + L++T DDQLET + +R Sbjct: 78 VPLVIERVQLDSKGRSLEESAREARYQAIARHLN--DDDLLLTGQHCDDQLETFLLALKR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG LS M + + +L I RP L R+ I + Q +SW ED SN D RF+R Sbjct: 136 GSGPKG--LSAMAHAMPFASSL-IVRPLLTSTRQQIEEYARQHQLSWVEDESNLDQRFDR 192 Query: 202 VRVRRFV 208 +R + Sbjct: 193 NFIRHTI 199 >gi|322689831|ref|YP_004209565.1| hypothetical protein BLIF_1650 [Bifidobacterium longum subsp. infantis 157F] gi|320461167|dbj|BAJ71787.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 388 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ + VDH L+E ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V +N+ Q GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + +RP L R++ + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215 >gi|293399915|ref|ZP_06644061.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306315|gb|EFE47558.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 406 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 28/236 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL RS+G + F +++ RE+A + V + C R I Sbjct: 14 VIGVSGGPDSMALLDMC------RSYG-LSFLVAHMNYQKRESAFRDEELVVNYCQRYEI 66 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + KP G A AR RY E + + I+ AH DD LET M+ +R Sbjct: 67 PCYVK--RQKKPCKGNFQAFARAERYHFYHELLEKYHGDAILLAHHLDDHLETYLMQMER 124 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+ +T+LYD + RP L ++++ ++ ++ + + D SN D + R Sbjct: 125 --GSKGVYYGIQEETVLYDCK--VLRPLLSYTKQELLAYCIEHQVPYGFDESNFTDDYTR 180 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQ 254 R+R D ++ K+ ++L ++ NN ++ K ++ +AI Q Sbjct: 181 NRIRHSYID------HMSRKEKEELAAEIAEKNNKAQQVLEK-----TKAFLAIWQ 225 >gi|262170788|ref|ZP_06038466.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451] gi|261891864|gb|EEY37850.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451] Length = 440 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 19/204 (9%) Query: 12 FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65 FV+ L YP LV A+SGG DS LL L + G+ +F A+ V H L Sbjct: 8 FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A V+ C I+ + + + + AREARY +S+H + TL++ Sbjct: 61 ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVDS--DTLLLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQLET + +R KG LS M + +++RP L R+DI ++ +Q+ Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-YLARPLLTVSRQDIEAYAMQK 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +SW D SN D R+ER +R + Sbjct: 176 KLSWVTDESNLDTRYERNFLRHHI 199 >gi|116333183|ref|YP_794710.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367] gi|116098530|gb|ABJ63679.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367] Length = 450 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H LVAVS G DSM LL L ++ + K + + V+H LR+ ++ E ++ C+ Sbjct: 22 HGLVAVSTGVDSMVLLQLLMTLPVTM---RPKLTVVHVNHQLRQQSQTEAAFLKKWCAAH 78 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I+ W + P G+ AAAR RY ++ A + TAH D+Q+ET+ ++ Sbjct: 79 QISLVTTKWPIDQHPSHGVEAAARAFRYDFFAQQLHQQKADWVATAHQADEQVETILLKL 138 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+GM + + RP L +E ++++ ++ + W ED +N + Sbjct: 139 IR--GGQLAQLTGMAASRPLAGGR-VIRPLLPFTKERLKAYAREQQVPWYEDATNQELIA 195 Query: 200 ERVRVR 205 R RVR Sbjct: 196 SRNRVR 201 >gi|170682716|ref|YP_001742316.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SMS-3-5] gi|170520434|gb|ACB18612.1| tRNA(Ile)-lysidine synthase [Escherichia coli SMS-3-5] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|24111623|ref|NP_706133.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 301] gi|61216594|sp|Q7UDQ6|TILS_SHIFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24050392|gb|AAN41840.1| cell cycle protein [Shigella flexneri 2a str. 301] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|222032018|emb|CAP74757.1| tRNA(Ile)-lysidine synthase [Escherichia coli LF82] gi|312944796|gb|ADR25623.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O83:H1 str. NRG 857C] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|170727604|ref|YP_001761630.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908] gi|259533759|sp|B1KNS7|TILS_SHEWM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|169812951|gb|ACA87535.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908] Length = 470 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 7/183 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A SGG DS L L L +S + ++ + V H L A V + Sbjct: 25 AKLVLAYSGGVDSEVLAQGLS--LYAKSHPEFRYLLVHVHHGLSRNADAWVTHCQKQALD 82 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ VV + + P+ + A AR ARY I+ + +A +++TAH DDQLETV + Sbjct: 83 YQLPIEVVQVQVKTGPRLSIEAEARRARYKAIT--SLMDSADVLLTAHHLDDQLETVLLA 140 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG LS M ++D + + RP L RE I + ++ ED SNTDD+ Sbjct: 141 LKRGLGPKG--LSAMGALQVFDGDKQLLRPLLNVSREQIEAKAASLSLPHIEDESNTDDK 198 Query: 199 FER 201 ++R Sbjct: 199 YDR 201 >gi|30061745|ref|NP_835916.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T] gi|30039987|gb|AAP15721.1| cell cycle protein [Shigella flexneri 2a str. 2457T] gi|281599543|gb|ADA72527.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2002017] gi|332762035|gb|EGJ92306.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2747-71] gi|332762192|gb|EGJ92461.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 4343-70] gi|332765037|gb|EGJ95265.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-671] gi|332768691|gb|EGJ98871.1| hypothetical protein SF293071_0275 [Shigella flexneri 2930-71] gi|333009368|gb|EGK28824.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-218] gi|333022234|gb|EGK41473.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-304] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|218698608|ref|YP_002406237.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39] gi|218368594|emb|CAR16331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39] Length = 432 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|325496120|gb|EGC93979.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ECD227] Length = 431 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPSVILRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|307718728|ref|YP_003874260.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192] gi|306532453|gb|ADN01987.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192] Length = 472 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 30/230 (13%) Query: 6 IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E V F + V A +LVA SGG DS LL HS+ R + + +DH +R Sbjct: 2 LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALL---HSLFLLRQRLNLTLKVVYLDHGIR 58 Query: 64 ETAK--DEVRYV------SDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 ++ E R+V D+ S + R+ + + + + ARE RYA E Sbjct: 59 PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173 + HT DDQ+ETV R R + G+S + D L RP L C Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDPLALRGMSPVRDRYL--------RPLLSCS 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 R ++ SFL ++ +S+ ED SN D ++ R F+R +H L + K+F Sbjct: 171 RSEVLSFLQEQGLSYLEDSSNEKDAYD----RNFLR---IHVLPVLEKRF 213 >gi|30249025|ref|NP_841095.1| hypothetical protein NE1022 [Nitrosomonas europaea ATCC 19718] gi|61216622|sp|Q82VP4|TILS_NITEU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|30138642|emb|CAD84933.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 458 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 11/195 (5%) Query: 11 FF--VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 FF +R+ V P + VA+SGG DS+ + LH + + +++ SA+ V+H + + Sbjct: 16 FFHNLRAQVRPGDRLTVALSGGVDSV---VLLHLLTTFSESMQLEVSAVHVEHGISTYSG 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +C L I S+ K +PQ L A AREARY + K I A +M A Sbjct: 73 EWSAFCQSLCDSLAIPLSIHRLKIRRRPQESLEAIAREARYQIF----KHIQADYVMLAQ 128 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ ++ R KG+ + + + RP L R +I ++ + Sbjct: 129 HQDDQVETLILQLLRGAGVKGLSAMPTVRLLEPGKTIRLFRPLLNIPRSEILNYARLHGL 188 Query: 187 SWCEDPSNTDDRFER 201 SW D SN D ++R Sbjct: 189 SWVTDESNLDTSYDR 203 >gi|227326554|ref|ZP_03830578.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 457 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 12/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS + LH +++ R + + H L A + C R + Sbjct: 29 ILLAYSGGLDSS---VLLHLLVALRQRSGLPIRTAYIHHGLNPLADSWAEHCCQQCERWQ 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + +S G+ AAAR ARY + H + A ++TA DDQ ET + +R Sbjct: 86 VPFASLSVTVEAQNGGIEAAARTARYQALQAHLQEGEA--LLTAQHLDDQSETFLLALKR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G LS M + L N + RP L R + ++ + + W ED SN D Sbjct: 144 GSGPAG--LSAMAASTLLGDNTTLGQHRLVRPLLGISRLQLEAYAQRHQLDWIEDDSNQD 201 Query: 197 DRFERVRVRRFV 208 +RF+R +RR + Sbjct: 202 ERFDRNFLRRQI 213 >gi|157158325|ref|YP_001461357.1| tRNA(Ile)-lysidine synthetase [Escherichia coli E24377A] gi|193063304|ref|ZP_03044395.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22] gi|193067588|ref|ZP_03048555.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019] gi|194428333|ref|ZP_03060875.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171] gi|256021620|ref|ZP_05435485.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] gi|260842420|ref|YP_003220198.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009] gi|260853398|ref|YP_003227289.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368] gi|260866337|ref|YP_003232739.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128] gi|293476845|ref|ZP_06665253.1| cell cycle protein MesJ [Escherichia coli B088] gi|332282862|ref|ZP_08395275.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] gi|157080355|gb|ABV20063.1| tRNA(Ile)-lysidine synthase [Escherichia coli E24377A] gi|192931212|gb|EDV83815.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22] gi|192959000|gb|EDV89436.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019] gi|194413708|gb|EDX29988.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171] gi|257752047|dbj|BAI23549.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368] gi|257757567|dbj|BAI29064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009] gi|257762693|dbj|BAI34188.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128] gi|291321298|gb|EFE60740.1| cell cycle protein MesJ [Escherichia coli B088] gi|320200286|gb|EFW74872.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EC4100B] gi|323157975|gb|EFZ44077.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EPECa14] gi|323176503|gb|EFZ62095.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1180] gi|323181696|gb|EFZ67110.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1357] gi|332105214|gb|EGJ08560.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] Length = 432 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|328948674|ref|YP_004366011.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489] gi|328448998|gb|AEB14714.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489] Length = 454 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 24/191 (12%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS--- 78 VAVSGG+DS+ LL+AL L+ I+ A++V+H +R + + D+ YV VC Sbjct: 34 VAVSGGADSVSLLVALKKNLN------IQLKAVTVNHNIRSSKESSDDADYVESVCRSLG 87 Query: 79 ----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R +A + K +T + AAR+ RY S+ KT + + AH +DQ+ET Sbjct: 88 VKCVRYDVAPGEIFSLAKKLKTSVEDAARKIRYEKFSDFIKTEGISFVCLAHNKNDQIET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + MR + + L G+ T RP L R +I +L + I++ D +N Sbjct: 148 LAMR----FLQGSANLCGIPMT-----REKFVRPLLNISRSEIEKYLQLQKINFRTDRTN 198 Query: 195 TDDRFERVRVR 205 D++ R R+R Sbjct: 199 FDNQIFRNRIR 209 >gi|289809587|ref|ZP_06540216.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 223 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|262044741|ref|ZP_06017788.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037891|gb|EEW39115.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 259 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L VL + A+ V H L A D V + +C + + Sbjct: 19 LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSVHADDWVVHCRQICQQWQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140 + V ++ G+ A AR ARY + T+NA +++TA DDQ ET+ + + Sbjct: 77 VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEMLVTAQHQDDQCETLLLALK 133 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + + RP L RE +R + L +SW ED SN DD ++ Sbjct: 134 R--GSGPTGLSAMAPSSAFAGSRLL-RPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190 Query: 201 R 201 R Sbjct: 191 R 191 >gi|116626117|ref|YP_828273.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus Ellin6076] gi|122251826|sp|Q01QT2|TILS_SOLUE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|116229279|gb|ABJ87988.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus Ellin6076] Length = 440 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 21/190 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78 A + V VSGG+DS+ LL AL + G +K S + VDH LR ++ + +V ++ + Sbjct: 6 ARVAVGVSGGADSVCLLHALVEL------GGLKLSVLHVDHGLRGAESRADAEFVGELAA 59 Query: 79 RLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R+ + V + Q G R AR E N + HT DQ ETV Sbjct: 60 RMGLPFCLREVTLGPGNVEQEG-----RRARLRFFHEQLAAGNCDRVALGHTRSDQAETV 114 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R GL+G+ I RP + R +I +L +R I W ED +N Sbjct: 115 LFRFLRGSGT--AGLAGIRPVTAEG----IVRPLIELERAEIEEYLRERQIPWREDATNA 168 Query: 196 DDRFERVRVR 205 + F R R+R Sbjct: 169 GEEFARNRIR 178 >gi|309700396|emb|CBI99684.1| tRNA(Ile)-lysidine synthase [Escherichia coli ETEC H10407] Length = 432 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADTWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [marine bacterium HP15] Length = 449 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 14/200 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 VR L + VA+SGG DS LL +A H G ++ AI ++H L+ A D Sbjct: 21 VRELPDHTRLWVALSGGLDSTLLLHLAAHC---HGCSGAVR--AIHINHQLQPNASDTES 75 Query: 72 YVSDVCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + C RL + V G+ AAR+ARYA + A L++ AH Sbjct: 76 FCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAAL--EALVGKGDLVLMAHHG 133 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV R R GL+GM + + RP L R ++ + +SW Sbjct: 134 DDQAETVLFRMLRGSGV--AGLAGMPASRELGTAT-LVRPLLGFERAELERWARVAGLSW 190 Query: 189 CEDPSNTDDRFERVRVRRFV 208 +DPSNTD RF+R +R V Sbjct: 191 VDDPSNTDQRFDRNFLRHTV 210 >gi|324112401|gb|EGC06378.1| PP-loop family protein [Escherichia fergusonii B253] Length = 431 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANANAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|307246460|ref|ZP_07528533.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255443|ref|ZP_07537250.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259895|ref|ZP_07541609.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852664|gb|EFM84896.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861627|gb|EFM93614.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866065|gb|EFM97939.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 419 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I + + + G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYTDVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 + R + L++T + P P + T+ DG + Q+L DS+I + + Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358 Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 P + Q L+ K+ GKP+ + + +PV Sbjct: 359 PKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVPV 399 >gi|213691452|ref|YP_002322038.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296454758|ref|YP_003661901.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum JDM301] gi|254789034|sp|B7GP48|TILS_BIFLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|213522913|gb|ACJ51660.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296184189|gb|ADH01071.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum JDM301] gi|320457524|dbj|BAJ68145.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 388 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ A+ VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V +N+ Q GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + + +RP L R + + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215 >gi|307257612|ref|ZP_07539372.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863915|gb|EFM95838.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 419 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 98/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E ++ N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQS-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYTDVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 + R + L++T + P P + + DG + Q+L DS+I + + Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLALPDGIGELQHLGDSIIYQKSGKIDRLLL 358 Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 P + Q L+ K+ GKP+ + + +PV Sbjct: 359 PEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVPV 399 >gi|331651093|ref|ZP_08352121.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M718] gi|331051547|gb|EGI23596.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M718] Length = 432 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|289675284|ref|ZP_06496174.1| PP-loop [Pseudomonas syringae pv. syringae FF5] Length = 276 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGHLL-RPLLDVSRKHLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|323964919|gb|EGB60385.1| PP-loop family protein [Escherichia coli M863] gi|327255167|gb|EGE66770.1| tRNA(Ile)-lysidine synthase [Escherichia coli STEC_7v] Length = 431 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPSVILRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEISEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|323342361|ref|ZP_08082593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463473|gb|EFY08667.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Erysipelothrix rhusiopathiae ATCC 19414] Length = 400 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 17/234 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V VSGG DSM LL +LS ++ I A V++ RET+K + V C + I Sbjct: 7 IVGVSGGPDSMALL----DILSKQN---IPCVAAHVNYGKRETSKRDEDIVRKYCEKNHI 59 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++++ AR RYA E +A + AH F+D LET + QR Sbjct: 60 PFECSNYEDDGKNHNFQHQARAFRYAFFKELVLKYDAEGVAIAHHFNDDLETYLFQKQRK 119 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + +GL+ T + D+ +W RP L ++ + + I + D SN + R Sbjct: 120 MESEHVGLAQY--TEIMDVTVW--RPLLDMTKDMVVQYCDDHQIQYGIDESNLSLDYTRN 175 Query: 203 RVRRFVRDIDLHAL------YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 ++R + +D ++ L K++ + R K+ ++A+ + + V M ++I Sbjct: 176 QIRNDIHYMDENSYESLVKEMLAAKQYGEKRSKMVKSIALQLDSKVKVDMYALI 229 >gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893] gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893] Length = 416 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIA---HSVVSWKNSKPQ----TGLMAAARE 104 + SAI ++H L+ A D R+ D+C L + V+ P+ G+ AAR Sbjct: 19 QVSAIHINHQLQPNADDAERFCEDICRELGVPLDIRRVIVSSRETPEIDTSGGVEEAARN 78 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 ARY + E L++ AH DDQ ETV R R G+G GM T Sbjct: 79 ARYQVFEE--ILAPGELLLMAHHGDDQAETVLFRLLRGTGVVGLG--GMPITRPLGAGR- 133 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + RP L R ++ ++ + I W EDPSN D+RF+R Sbjct: 134 LYRPLLDFSRAELHAWAAEHGIEWMEDPSNIDERFDR 170 >gi|225075259|ref|ZP_03718458.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens NRL30031/H210] gi|224953434|gb|EEG34643.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens NRL30031/H210] Length = 441 Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 144/327 (44%), Gaps = 42/327 (12%) Query: 19 PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H + V +SGG DS+ LL LH + R F A+ V H L A ++ D Sbjct: 21 PSHTVFEVGLSGGLDSVVLLHLLHRM---REFRYFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL +A V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CQRLNVALRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + + R G GL GM ++ DLN + I RP L R+++ + Q +S+ ED S Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPILAFSRQELVEYAQQWGLSFVEDES 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTV 244 N D + +R ++R+ L ++ F+ ++ N ++ +Y + Sbjct: 189 NEDSGY----LRNWMRNQALPQWQQRIPNFEQ-QICANVRLLQEDLQLLDELIESEYQRI 243 Query: 245 HMRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 I ++S Q + LL+Y LR SLP Y S+ L++ + Sbjct: 244 SPNGIFSVSLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQ 297 Query: 302 VSI--GRVVIDRRANFLWITRAVRNLP 326 +++ G +V R F+ + LP Sbjct: 298 LNLSDGELVAYRDKLFVCQESEFQKLP 324 >gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC 35910] gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC 35910] Length = 449 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 13/199 (6%) Query: 13 VRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +++LV+ L+AVSGG DSM L + K +F +++ LR D Sbjct: 11 LKNLVHEPEKHTFLLAVSGGVDSMVLASLFRDFGQEIQDSKFRFQVAHINYKLRGNDSDL 70 Query: 69 EVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + V D C + I + VS K+ KP+ + ARE RY + ++TAH Sbjct: 71 DQKTVQDFCEKNHIKFHLYEVSEKDQKPENSIQLWARELRYRFFKTIQEKEKLEFLVTAH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQLET + K G++G+ +D N I RP L +++I F +I Sbjct: 131 HLNDQLETFIIN-----LSKAAGINGLSGIPSHDNN--ILRPLLNFSKKEIYQFAELNHI 183 Query: 187 SWCEDPSNTDDRFERVRVR 205 + ED SN + + R ++R Sbjct: 184 EFREDLSNKKNDYLRNKIR 202 >gi|119953563|ref|YP_945773.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135] gi|119862334|gb|AAX18102.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135] Length = 439 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 25/212 (11%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ IES F+ ++ + ++VA SGG+DS LL++L L++ A+ H + Sbjct: 8 LTKIES--FYFKNSLTKEKVIVAFSGGADSTTLLLSLKEYLNN------NIVALYFAHYI 59 Query: 63 RETAKD--EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHA 114 R + E+ ++ C+ I + V K Q G+ AR+ RY + E Sbjct: 60 RSDFEQNLEIEHIKKFCNFYSITFQIKRCSVDIKRKSRQLGMSVEELARKYRYDALLESF 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ I AH +DQ ET+ MR Q + + GLSG+ +N I RP + Sbjct: 120 IENGASYIALAHNQNDQFETLVMRFFQGSFLD---GLSGIPV-----INGNIIRPLIEVS 171 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 REDI FL NI + D +N +D + R R+R Sbjct: 172 REDIEKFLSLNNIVYSVDSTNREDLYLRNRIR 203 >gi|262281027|ref|ZP_06058810.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202] gi|262257927|gb|EEY76662.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202] Length = 467 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 17/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + K AI +DH L+ + + + V+ +RL I Sbjct: 34 LIGCSGGMDSMLLLHLISQIFPQ------KIRAIYIDHQLQSQSAEWGKLVAKQATRLDI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K L A AR+ARY +H + N L++ AH DQ ETV +R Sbjct: 88 PYIIQ--KVQVADGNLEAQARQARYQAYRQHLQP-NEILVL-AHHQQDQAETVMLR---- 139 Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ +I Y +++ I RPFL RE I + Q I + DP+N D ++ Sbjct: 140 -LLSGAGVDGLAAMQSIDYRVDMTIWRPFLDLTREQIADWTTQLEIEYVNDPTNYDIHYD 198 Query: 201 RVRVRR 206 R R Sbjct: 199 RAWSRE 204 >gi|284048931|ref|YP_003399270.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM 20731] gi|283953152|gb|ADB47955.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM 20731] Length = 350 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ A+SGG+DS+ L + + + + A+ V H LR E A+ + R V D C Sbjct: 24 VIAALSGGADSLCLADVMAAQGEEDG---VDVLAVHVQHHLRGEEAEQDARQVEDYCRNR 80 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +A V K L AAR RY + + A I AH DDQ ETV Sbjct: 81 GLAFRRVDVDARSLAEKEGLSLEDAARRLRYEALETCRQEAGAEAIFLAHHQDDQAETVL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R +G L GM +N +++RPFL R D ++ + ++WC+D +N D Sbjct: 141 LNLVRGAGTRG--LRGM-----LPVNGYLARPFLGITRRDTEAYCEEMGLTWCQDSTNED 193 Query: 197 DRFERVRVRR 206 +R VR+ Sbjct: 194 QSLKRNWVRK 203 >gi|73540827|ref|YP_295347.1| PP-loop [Ralstonia eutropha JMP134] gi|72118240|gb|AAZ60503.1| PP-loop [Ralstonia eutropha JMP134] Length = 484 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 8/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG DS+ LL A + +S + A+ V H L+ A + +D+C+R Sbjct: 46 VAVALSGGRDSVALLHATQAAVSAWRM-PARVVALHVHHGLQAQADAWDAFCADLCARWE 104 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + V VS + + G+ AAAR ARY + + + A ++ AH DDQ+ETV +R Sbjct: 105 LGYFVRRVSVQAGTGE-GIEAAARRARYEALGDMCRASGARFLLFAHHLDDQVETVLLRL 163 Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GM SGM D ++ + RP+L R DI S+ ++W +DPSN Sbjct: 164 FRGAGVAGM--SGMPAMRKLDEAGDIMLLRPWLEVPRADIDSYCAAHELAWIDDPSNDST 221 Query: 198 RFERVRVR 205 R+ R +R Sbjct: 222 RYARNALR 229 >gi|291281010|ref|YP_003497828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli O55:H7 str. CB9615] gi|209745670|gb|ACI71142.1| cell cycle protein MesJ [Escherichia coli] gi|290760883|gb|ADD54844.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli O55:H7 str. CB9615] gi|320658308|gb|EFX26037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663618|gb|EFX30902.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. USDA 5905] Length = 431 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 466 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 5/187 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+AVS G DSM LL + + + F V+H LR + E ++ C Sbjct: 21 FLLAVSTGVDSMVLLQIFCQLFPEMQ-KEPCFGVAHVNHQLRPASAKEAAFLRQYCQERG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I W+N P+TG+ A+AR+ RY ++ +++TAH DDQ+ET+ M+ R Sbjct: 80 IPFYERCWENP-PETGVEASARDFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + G GM + + + RP L + I + + I + ED SN + + R Sbjct: 139 EGRLRSAG--GMQQQQPFHTGVLL-RPLLTVSKAAIYDYAQAQQIPYFEDESNHEPLYLR 195 Query: 202 VRVRRFV 208 R+R+ V Sbjct: 196 NRLRQQV 202 >gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641037|sp|Q493B5|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 510 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETA 66 R LV ++++ SGG DS LL L + ++ AI V H + + Sbjct: 15 RKVTHCLVGHTRLVLSYSGGLDSTVLLDILTRLKNNSDHFTSSPFMLRAIYVHHGISNYS 74 Query: 67 KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + + C I SV+ + Q + A AR RY + + + + +++ Sbjct: 75 DEWASHCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKL--YNRLNSKEILL 132 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH +DQ+E++++ +R GLSGM LY + RP L C RE + + + Sbjct: 133 TAHHMNDQVESLFLALKR--GSGPSGLSGMSKNALYANKYRLLRPLLDCSREQLEMYAYK 190 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 + + W ED +NTD RF+R +R Sbjct: 191 KKLVWIEDDTNTDTRFDRNFLR 212 >gi|188492707|ref|ZP_02999977.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638] gi|254037607|ref|ZP_04871684.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43] gi|188487906|gb|EDU63009.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638] gi|226840713|gb|EEH72715.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43] Length = 432 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|293408280|ref|ZP_06652120.1| tilS [Escherichia coli B354] gi|291472531|gb|EFF15013.1| tilS [Escherichia coli B354] Length = 432 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|283835250|ref|ZP_06354991.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220] gi|291068961|gb|EFE07070.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220] Length = 430 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS LL L VL ++ AI + H L A V++ VC++ + Sbjct: 16 ILVAFSGGLDSTVLLHQL--VLWRAQHPQVALRAIHIHHGLSPHADGWVQHCESVCAQWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V G+ A AR ARY ++ + ++MTA DDQ ET + +R Sbjct: 74 VPLVVERVHLEDDGLGIEAQARRARYQAFAQ--TLLPGEVLMTAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + I RP L RE + + Q + W ED SN DD ++R Sbjct: 132 GSGPAG--LSAMGERSPFAGTQLI-RPLLAQTREALEGWARQHQLCWIEDESNQDDAYDR 188 >gi|209745664|gb|ACI71139.1| cell cycle protein MesJ [Escherichia coli] gi|320644764|gb|EFX13808.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. 493-89] gi|320652920|gb|EFX21158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. H 2687] gi|320668931|gb|EFX35726.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. LSU-61] Length = 431 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|320173331|gb|EFW48534.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae CDC 74-1112] Length = 432 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|323935028|gb|EGB31401.1| PP-loop family protein [Escherichia coli E1520] Length = 431 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|325971761|ref|YP_004247952.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy] gi|324026999|gb|ADY13758.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy] Length = 484 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 23/218 (10%) Query: 7 ESVRFFVRSLVYPAHI------LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 E+V VRS + HI VA SGGSDS+ LLIAL + + SF A+ V H Sbjct: 6 ETVLNNVRSFLAMQHIDATKRIGVAFSGGSDSLALLIALRK-MYEPSF----LHAMYVQH 60 Query: 61 CLRETAKDEVRYV--SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALIS 111 LR + + E + C +L ++ + V+ + G+ AAR RY + Sbjct: 61 HLRPSNELEAETALNRENCQKLGVSLHILDLGKGSVAHAMQTRRGGVEEAARYLRYEALY 120 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFL 170 E T + TAH DDQLET MR + A L G+ + D L + RP L Sbjct: 121 EECNRGGCTYLATAHNADDQLETTLMRLFQ--ASSIAALEGIRPVRIVDGYALTLIRPVL 178 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 C + ++ N+ W ED +NT+D + R +R + Sbjct: 179 ECSHAVLAEYVGLHNLVWSEDSTNTEDAYLRNTIRHTI 216 >gi|319760425|ref|YP_004124363.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str. BVAF] gi|318039139|gb|ADV33689.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str. BVAF] Length = 535 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 15/197 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSV-------LSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++L++ SGG DS LL L ++ + R F + A+ V H L E A D + Sbjct: 34 NLLLSYSGGLDSTVLLDILTTLTKNSQIWMKSRKF-PLFLKAVYVHHGLNEKADDWANHC 92 Query: 74 SDVCSRLRIAHSV--VSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C + ++ + + N K ++ + + AR+ RY ++ ++ +++TAH DD Sbjct: 93 AHQCQIRDVPFNILYIQYFNFCKKRSNVESLARKLRYQVLYDYLNVNVEEILLTAHHMDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISW 188 QLETV + +R GLSG+ + YD + RP L C R + + +R + W Sbjct: 153 QLETVLLALKR--GSGPAGLSGISREVWLNYDYRYRVLRPLLGCSRGQLEEYAHRRKLIW 210 Query: 189 CEDPSNTDDRFERVRVR 205 D +N + RF+R +R Sbjct: 211 INDDTNVNIRFDRNFLR 227 >gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] Length = 521 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 20/190 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +V ++ AVSGG DS+ LL+ L S K +DH LR + + +V Sbjct: 20 MVPEGSLVAAVSGGGDSVALLLLLTSTPR-------KVVVAHLDHSLRPESGQDALWVKA 72 Query: 76 VCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + RL V+ ++ L A ARE RY +++ AK A I+TAHT DDQ Sbjct: 73 LAERLGYPFESEKLDVAKIAAERGGNLEATARELRYGFLAKVAKKHQAQAILTAHTEDDQ 132 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV ++ + +G+G+ ++ RP L R +R++L + W ED Sbjct: 133 AETVLLQLLQGTG-RGLGMRPKRGKVV--------RPLLELSRSTLRAYLRCKQQDWLED 183 Query: 192 PSNTDDRFER 201 SN D +R Sbjct: 184 ISNADTSLDR 193 >gi|302342198|ref|YP_003806727.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075] gi|301638811|gb|ADK84133.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075] Length = 466 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 14/192 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ AVSGG+DS+ +L L S+R + + VDH LR + + +V+D+ Sbjct: 8 PGTLVAAVSGGADSVAMLRLLAEQASERGW---RLVVGHVDHGLRADSAVDAAFVADLAG 64 Query: 79 RLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + VV + Q GL AAR AR + A+ ++A + AHT DDQ ETV Sbjct: 65 ALGLECRVV--RVVARQAGLSPEDAARRARRQALLALAEELDAVAVALAHTIDDQAETVL 122 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G G+ LW RP L R ++R +L W EDPSN D Sbjct: 123 ARLL-----TGAGPGGLAAMRPRSGPLW--RPLLAVRGRELRDYLAALGQPWREDPSNAD 175 Query: 197 DRFERVRVRRFV 208 ++R R+R V Sbjct: 176 RAYQRNRLRHAV 187 >gi|82542786|ref|YP_406733.1| tRNA(Ile)-lysidine synthetase [Shigella boydii Sb227] gi|187730131|ref|YP_001878990.1| tRNA(Ile)-lysidine synthetase [Shigella boydii CDC 3083-94] gi|81244197|gb|ABB64905.1| cell cycle protein [Shigella boydii Sb227] gi|187427123|gb|ACD06397.1| tRNA(Ile)-lysidine synthase [Shigella boydii CDC 3083-94] gi|320186610|gb|EFW61335.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri CDC 796-83] gi|332098780|gb|EGJ03740.1| tRNA(Ile)-lysidine synthase [Shigella boydii 3594-74] Length = 432 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|283457230|ref|YP_003361800.1| putative ATPase [Rothia mucilaginosa DY-18] gi|283133215|dbj|BAI63980.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Rothia mucilaginosa DY-18] Length = 377 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS L G ++ AI VDH L+E + + + L Sbjct: 53 LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTDLG 109 Query: 82 IAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + H V++ K P G AAR ARY ++ + A ++ HT DDQ ETV + Sbjct: 110 L-HPVITEKVQVPVGNMGPEMAARTARYTAFTKAVEATGARAVLLGHTLDDQAETVLLGL 168 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+GM + + ++ RPFL RR D+ + ++ DP+NTD+ Sbjct: 169 SRGSGTR--SLAGMPPVRVEEGVTYL-RPFLGLRRTDMLNICDAETLTPWIDPTNTDETL 225 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 226 MRARIRHSV 234 >gi|225375860|ref|ZP_03753081.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM 16841] gi|225212295|gb|EEG94649.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM 16841] Length = 487 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 29/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS-- 78 +L VSGG+DS+ LL+ L + F A+ V+H +R E ++ + +V ++C Sbjct: 21 VLAGVSGGADSVCLLLMLEQLQKKTDF---LLEAVHVEHGIRGEESRKDAAFVKNLCQDH 77 Query: 79 --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------IMTAHTFDD 130 R I V K GL AAR RY + A+++ + AH +D Sbjct: 78 GIRCHIFSVEVPLFAEKHGLGLEEAARILRYDCYKKAAESVKKEFPEKKIKLALAHHAED 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQR 184 ETV + R G GL G+C D +Y+L RP L RE+I +FL + Sbjct: 138 NAETVLFQMVR-----GSGLDGLCGMSRRRDEGIYEL----IRPLLAQPREEIEAFLREC 188 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 S+C D +N D + R R+R V Sbjct: 189 GQSYCMDETNLDTEYSRNRIRHQV 212 >gi|126173704|ref|YP_001049853.1| Fis family transcriptional regulator [Shewanella baltica OS155] gi|125996909|gb|ABN60984.1| transcriptional regulator, Fis family [Shewanella baltica OS155] Length = 476 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 9/193 (4%) Query: 11 FFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F V + P +++A SGG DS L L R + + + V H L + A Sbjct: 21 FLVEQPLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSW 78 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ + + +V N P+ L A AR+ RY I H + +++TAH Sbjct: 79 AQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHE 136 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ + +R + KG+ G + L RP L RE I ++ Q+ + Sbjct: 137 DDQLETILLALKRGHGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVH 193 Query: 189 CEDPSNTDDRFER 201 ED SN DD+++R Sbjct: 194 IEDESNQDDKYDR 206 >gi|195953926|ref|YP_002122216.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933538|gb|ACG58238.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 306 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 10/187 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ SGG DSM +L L L D + G I+ +H LRE A ++ + D L+ Sbjct: 23 ILIGFSGGVDSM-VLSCLMYKLKD-ALG-IEIGLAHFNHHLREDADEDEAFCIDFAKSLK 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V S+ + + AR+ RY + + +K I TAH DD ET+ + Sbjct: 80 LPIYVESFDIKSLKGNIEENARKKRYEFLQKTSKKEGYNKIATAHHLDDLAETMIL---- 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +G GL G+ Y N I RP + +++IR+F +++++W ED +N D+ R Sbjct: 136 -WFVRGGGLKGLSGFKAYKEN--IIRPLITATKDEIRAFAKEQHLNWKEDYTNYDETISR 192 Query: 202 VRVRRFV 208 +R V Sbjct: 193 NLIRHKV 199 >gi|170021459|ref|YP_001726413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739] gi|169756387|gb|ACA79086.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739] Length = 432 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|254520535|ref|ZP_05132591.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA] gi|226914284|gb|EEH99485.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA] Length = 469 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L+ + R I A V+H LR + A ++ Y ++C Sbjct: 26 VLVALSGGPDSVCLLHILYKL---RESLNIDIGAAHVNHMLRGQDALNDEEYAKEICKEF 82 Query: 81 RIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + K + G+ A RE RY T N + I AH +DQ ETV Sbjct: 83 NIEFYPIRIDIDKIAKEKGISHEMAGREERYKFFDFIKNTQNYSKIAVAHNSNDQAETVV 142 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G G+ G+C I + I RP L RED+ ++ + N++ D +N + Sbjct: 143 MNMMR-----GAGIEGLC-GIRSKRDGGIIRPILCLSREDVENYCKENNLNPRIDKTNLE 196 Query: 197 DRFERVRVR 205 + + R +VR Sbjct: 197 NIYSRNKVR 205 >gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032] gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032] Length = 329 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 14/210 (6%) Query: 3 LSP-IESVRFFVRSLV--YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +SP + ++R VR ++ PA +LVA SGG+DS+ L A + ++ RS G++ ++ Sbjct: 4 ISPSVAAIRVAVRRVLAELPADGPVLVACSGGADSL-ALAAAAAFVAPRS-GRVA-GLVT 60 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 VDH L+ + + V+ + ++ VV + + G AAAREARY + E A Sbjct: 61 VDHGLQTGSAERAEAVARWAEQAGLSPVEVVRVEVAGRPGGPEAAAREARYQALVEAAGR 120 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRRE 175 A ++T HT DDQ ETV + R + GL+GM + DL + + RP L RE Sbjct: 121 HRAAALLTGHTRDDQAETVLLALARGAGPR--GLAGM--PVRRDLGGVPLVRPLLEISRE 176 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R+ ++ +DP N D + R RVR Sbjct: 177 QTRAACAALRLTPWQDPHNLDPAYARSRVR 206 >gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773] Length = 435 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 14/204 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE ++ +++ + I+VAVSGG DS+ LL AL L + V++ LR Sbjct: 2 IEKIQQQLQAQDWEPTIIVAVSGGVDSVVLLHALRQHLP-----TAQLVVAHVNYHLRAE 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + ++ +V+++ + + + W + P TG+ A AR RY A I A Sbjct: 57 SDEDAAFVAELAQQYQAQFELCEW-DDIPTTGVEAQARTLRYRFFEALAAKYQTQTIAVA 115 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV ++ R + L+GM + I RPFLR ++ + S+ Sbjct: 116 HHANDQAETVLLKLAR--GGQVTQLAGMATSRAK-----IRRPFLRITKQTLMSYAQAHG 168 Query: 186 ISWCEDPSNTD-DRFERVRVRRFV 208 ++W D +N D D R R+R V Sbjct: 169 LTWRHDQTNDDPDYTARNRLRHVV 192 >gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] gi|299800072|gb|ADJ50447.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] Length = 319 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 88/197 (44%), Gaps = 16/197 (8%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ +L P + VAVSGG+DS+ L A V R A+ VDH L+E + Sbjct: 16 FLETLEAPPELCVAVSGGADSLALAEAAAYVGHHRGH---VVRALVVDHGLQEGSAKIAA 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L + + V + G AAAR+ARY +++ H L++ HT DDQ Sbjct: 73 DAAAAAKALGVDEAEVRRADVTGAGGPEAAARKARYRVLAGH------DLVLLGHTLDDQ 126 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R G G + +D W RP L R R+ + + +D Sbjct: 127 AETVLLGLGR-----GSGPRSVAGMRPHD-PPW-GRPLLAVGRATTRAACAELGVEPWDD 179 Query: 192 PSNTDDRFERVRVRRFV 208 P N + RF RVR+R V Sbjct: 180 PHNAEPRFTRVRLRTEV 196 >gi|255326128|ref|ZP_05367215.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296] gi|255296839|gb|EET76169.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 9/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS L G ++ AI VDH L+E + + + L Sbjct: 53 LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTELG 109 Query: 82 IAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + H V+ K P G AAR ARYA ++ + A ++ HT DDQ ETV + Sbjct: 110 L-HPVIIEKVQVPVGNMGPEMAARTARYAAFTKAVEATGARAVLLGHTLDDQAETVLLGL 168 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+GM + + + RPFL RR D+ ++ DP+NTD+ Sbjct: 169 SRGSGTR--SLAGM-PPVRVEGGVTYLRPFLGLRRTDMLDICDAETLTPWIDPTNTDETL 225 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 226 MRARIRHSV 234 >gi|288800193|ref|ZP_06405652.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 299 str. F0039] gi|288333441|gb|EFC71920.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 299 str. F0039] Length = 444 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 25/213 (11%) Query: 1 MFLSPIESV----RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 MFL IE ++ +Y LVA+SGG+DS+ LL+ L + + F Sbjct: 1 MFLRKIEQFIEQKELMSKNQLY----LVALSGGADSVALLLVLKRLGYNVEAAHCNF--- 53 Query: 57 SVDHCLRETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 H E + + + D+C +L +AH S + AAR RY Sbjct: 54 ---HLRGEESDRDEDFCKDLCRELDIKLHLAHFDTQTNASLHGISIEMAARNLRYNYFEA 110 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K INA+ + AH DD ET+ + R G G+ G+ T + N I RPFL Sbjct: 111 LLKDINASAVCVAHHKDDSAETLLLNLVR-----GTGIEGL--TGIKSKNNRIVRPFLCV 163 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RR +I ++L Q+N S+ D SN + +R ++R Sbjct: 164 RRNEIINYLEQQNQSFVTDSSNLVNDVQRNKIR 196 >gi|258513582|ref|YP_003189804.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257777287|gb|ACV61181.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 473 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 14/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 IL+AVSGG DS+ +L L + D I ++H R E + + +V ++ R Sbjct: 24 ILLAVSGGPDSVAMLDVLFCLRHDLG---ISLHIAHLNHMFRGEESLGDAEFVRELAVRY 80 Query: 81 RIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V ++ + +TGL + AAR RY+ + E A +A+ I AH DDQ ETV Sbjct: 81 NLPVTVRHINVPSFMEKTGLSSQPAARTVRYSFLDETAAQESASRIALAHHADDQAETVM 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G +G+ + N +I RP L +R+DI + ++N+ W D SN Sbjct: 141 LHFLR-----GSGAAGLRGMLPVRDNFYI-RPMLCLKRQDIEDYCKKKNLRWRVDSSNLK 194 Query: 197 DRFERVRVRRFV 208 + R ++R ++ Sbjct: 195 TDYRRNKIRMYL 206 >gi|168215140|ref|ZP_02640765.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str. F4969] gi|170713441|gb|EDT25623.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str. F4969] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|168206867|ref|ZP_02632872.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str. JGS1987] gi|168211206|ref|ZP_02636831.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC 3626] gi|170661729|gb|EDT14412.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str. JGS1987] gi|170710765|gb|EDT22947.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC 3626] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|169343171|ref|ZP_02864192.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str. JGS1495] gi|169298723|gb|EDS80799.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str. JGS1495] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|209695834|ref|YP_002263764.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238] gi|208009787|emb|CAQ80094.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238] Length = 443 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 9/190 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + ++VA SGG DS+ + LH ++ A+ V+H L E A + + C Sbjct: 18 SELVVAFSGGVDSV---VLLHLAAYYSKLHQLPCVAVYVNHGLSEHAVEWEVFCQSYCDS 74 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L I+ + + PQ L AREARY ++++H N +L++T DDQ+ET ++ Sbjct: 75 LGISLFIERVNLDIGPQQSLEEVAREARYDVLAKHIN--NHSLLLTGQHQDDQVETFFLA 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R GLS M I + RP L R DI ++ + W ED SN D R Sbjct: 133 LKR--GSGPAGLSSM-PVIAPFVTGRKCRPLLSTSRCDIEAYANVNQLKWVEDESNKDTR 189 Query: 199 FERVRVRRFV 208 F+R +R V Sbjct: 190 FDRNFLRHKV 199 >gi|261876168|ref|YP_697160.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124] gi|281185487|sp|Q0TMI0|TILS_CLOP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|255529904|gb|ABG82412.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|95930473|ref|ZP_01313209.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM 684] gi|95133513|gb|EAT15176.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM 684] Length = 415 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 19/169 (11%) Query: 49 GKIKFSAI--SVDHCLRETAKDEVRYVSDVCSRL-------RIAHSVVSWKNSKPQTGLM 99 G+ F + +DH LR+ + D+ +V ++ +RL R+ ++ +N + GL Sbjct: 3 GQHHFDVVVAHLDHGLRDESADDALFVQELAARLDLRFFKRRVEVGGLAQRN---RWGLE 59 Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 A REAR A +SE A + +I AH DDQ ETV M + +G G+ G+ + + Sbjct: 60 EAGREARRAFLSEVADQVGGAVIALAHHRDDQSETVLM-----HLARGCGVGGLA-GMRW 113 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +I RP L R +I +FL + + W ED SN ++RF+R +R V Sbjct: 114 QEGKYI-RPMLSICRNEINAFLQRHRLEWREDDSNRNERFKRNLIRHQV 161 >gi|300938597|ref|ZP_07153329.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1] gi|300456443|gb|EFK19936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1] Length = 437 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C R ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENICQRWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|182626023|ref|ZP_02953786.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str. JGS1721] gi|177908730|gb|EDT71241.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str. JGS1721] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|168218232|ref|ZP_02643857.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239] gi|182379755|gb|EDT77234.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|157159653|ref|YP_001456971.1| tRNA(Ile)-lysidine synthetase [Escherichia coli HS] gi|209917378|ref|YP_002291462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SE11] gi|218552769|ref|YP_002385682.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1] gi|218693653|ref|YP_002401320.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989] gi|307311364|ref|ZP_07591006.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|331666429|ref|ZP_08367310.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA271] gi|331680767|ref|ZP_08381426.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H591] gi|157065333|gb|ABV04588.1| tRNA(Ile)-lysidine synthase [Escherichia coli HS] gi|209910637|dbj|BAG75711.1| cell cycle protein [Escherichia coli SE11] gi|218350385|emb|CAU96068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989] gi|218359537|emb|CAQ97075.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1] gi|306908343|gb|EFN38841.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|315059406|gb|ADT73733.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|323380035|gb|ADX52303.1| tRNA(Ile)-lysidine synthetase [Escherichia coli KO11] gi|323945665|gb|EGB41714.1| PP-loop family protein [Escherichia coli H120] gi|324017845|gb|EGB87064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 117-3] gi|324118308|gb|EGC12203.1| PP-loop family protein [Escherichia coli E1167] gi|331066640|gb|EGI38517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA271] gi|331072230|gb|EGI43566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H591] Length = 432 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|18311454|ref|NP_563388.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens str. 13] gi|61216685|sp|Q8XHL1|TILS_CLOPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|18146138|dbj|BAB82178.1| probable cell-cycle protein [Clostridium perfringens str. 13] Length = 469 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + R I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|191167023|ref|ZP_03028845.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A] gi|300816228|ref|ZP_07096451.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1] gi|300923020|ref|ZP_07139087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1] gi|309796365|ref|ZP_07690774.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7] gi|190902916|gb|EDV62643.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A] gi|300420647|gb|EFK03958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1] gi|300531435|gb|EFK52497.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1] gi|308120069|gb|EFO57331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7] Length = 432 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|301330010|ref|ZP_07222697.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1] gi|300843964|gb|EFK71724.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1] Length = 432 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|323190412|gb|EFZ75687.1| tRNA(Ile)-lysidine synthase [Escherichia coli RN587/1] Length = 432 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADVWVIH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSAFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|324014127|gb|EGB83346.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 60-1] Length = 437 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + + V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQGPLGVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10] gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10] Length = 434 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 91/200 (45%), Gaps = 21/200 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 A L+AVSGG DSM LL S ++F V++ LR D + R V + C+ Sbjct: 21 ARYLLAVSGGVDSMVLLYLF-------SHSNLEFEVAHVNYRLRGVDSDADQRIVEEFCA 73 Query: 79 RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V V + KP + ARE RY + + I+TAH +DQLET Sbjct: 74 KHHLTLHVYEVGDHDGKPANSVQLWARELRYGFFRKIQIQSDLQYIVTAHHLNDQLETFI 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R A GLSG+ I RP L + DI F QR+I + ED SN+ Sbjct: 134 INLSR--ASGLNGLSGIPSN-----ENGILRPLLNFTKNDIYDFAAQRSIQFGEDVSNSK 186 Query: 197 DRFERVRVRRFVRDIDLHAL 216 + + +R F+R+ H L Sbjct: 187 NDY----LRNFIRNEIAHRL 202 >gi|303240184|ref|ZP_07326704.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2] gi|302592275|gb|EFL62003.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2] Length = 465 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 88/303 (29%), Positives = 136/303 (44%), Gaps = 50/303 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++V VSGG DS+ LL L + D + A+ ++H LR E+ +DE YV +CS Sbjct: 21 VVVGVSGGPDSVCLLHVLWRLRKDFD---LYIVAVHINHMLRGSESCRDE-NYVKSLCSE 76 Query: 80 LRIAHSVVS---WKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I + K SK + L A RE RY A ++ A+ I AH +DQ ETV Sbjct: 77 LEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIAVAHNKNDQAETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M R G GL G+ + Y + I RP L R +I ++ + +++ D SN Sbjct: 137 LMNIIR-----GSGLDGL-KGMDY-IRGRIIRPLLDIERNEIEAYCRENSLNPITDSSNL 189 Query: 196 DDRFERVRVR-------------RFVRDID-LHALYLKMKKFQDLRV----------KVN 231 +D + R ++R FV+ +D L+ L F D ++ K N Sbjct: 190 EDIYSRNKIRLNVIPYIDTLFGCNFVKSVDRLNRLVKDDIDFIDGKIKKSYYAAVLRKEN 249 Query: 232 NAVAMLIPKYLTVHM---RSII--AISQDILNIDSTLLFYLLRVSAAI----CGGQISLP 282 V +L+ K +H+ R II AI++ N+ ++ RV I G ++ LP Sbjct: 250 EEVELLLGKIKKMHIAVKRRIIRKAINEVKGNVKGIESLHIERVLNMIDNGRVGSRLDLP 309 Query: 283 GYR 285 G + Sbjct: 310 GIK 312 >gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 466 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+AVS G DSM LL + + + F V+H LR + E ++ C Sbjct: 21 FLLAVSTGVDSMVLLQIFCQLFPEMQ-KEPCFGVAHVNHQLRPASAKEAAFLRQYCQERG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I W+N P+TG+ A+AR RY ++ +++TAH DDQ+ET+ M+ R Sbjct: 80 IPFYERCWENP-PETGVEASARNFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + G GM + + + RP L + I + + I + ED SN + + R Sbjct: 139 EGRLRSAG--GMKQQQPFHTGILL-RPLLTVSKAAIYDYAQAQQIPYFEDESNHEPLYLR 195 Query: 202 VRVRRFV 208 R+R+ V Sbjct: 196 NRLRQQV 202 >gi|157165572|ref|YP_001467030.1| ATP/GTP hydrolase [Campylobacter concisus 13826] gi|112800063|gb|EAT97407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter concisus 13826] Length = 330 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-- 80 L+A S G DS L L +KF + VDH +RE +K EV ++ S+ Sbjct: 16 LLAFSHGIDSTALFYILKET-------GVKFDLVIVDHNVREQSKFEVESAKELASKFGK 68 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I V+ S + AREARY SE + ++ AH FDD+ E M+ Sbjct: 69 KIYVKSVNLAGSNFEKN----AREARYEFFSEICQKFGYENLILAHQFDDKFEWFLMQ-- 122 Query: 141 RDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 KG GL GM + + + W+ RP L R+++++++L +R + + D +N + Sbjct: 123 ---LGKGAGLKELFGMSELEKRE-HFWLVRPLLNLRKKELQNYLDERGLRYFVDETNLEG 178 Query: 198 RFERVRVR 205 + +R VR Sbjct: 179 KLKRSFVR 186 >gi|82775579|ref|YP_401926.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae Sd197] gi|81239727|gb|ABB60437.1| cell cycle protein [Shigella dysenteriae Sd197] Length = 431 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVVLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY] gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY] Length = 335 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG+DS LL+A + R G++ A V H L+ A ++ +C RL Sbjct: 18 LAVALSGGADSTALLLAC----AARWPGQV--VAFHVHHGLQAAADGFEQHCVALCERLG 71 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLIMTAHTFDDQLET 134 I V V +++ Q+ AAR+ RY A+ T+ + H DDQ+ET Sbjct: 72 IPLWVRRVDARHAAGQSP-EDAARQVRYKAFEALALDCQAQAAIKTIALAQHA-DDQVET 129 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + R G G++G+ + RP LR D+R++L+ R+ W EDP Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWQRAGMDWCRPLLRVAGADVRAWLVARDERWVEDP 184 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +N D+RF R R+RR + L AL +F+D Sbjct: 185 TNADERFTRNRIRRQL----LPALQQAFPQFRD 213 >gi|51599039|ref|YP_073227.1| hypothetical protein BG0813 [Borrelia garinii PBi] gi|61216476|sp|Q65ZY6|TILS_BORGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51573610|gb|AAU07635.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 440 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRTDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA V + K+ + G + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + G+ G+ I+ RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLSGIPGVNKNII--------RPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NIS+ D +N D + R RVR Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204 >gi|27904608|ref|NP_777734.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396403|sp|Q89AX3|TILS_BUCBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27904005|gb|AAO26839.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 438 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 55/342 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +IL+A SGG DS + + ++ F AI ++H L ++ SD C ++ Sbjct: 13 NILLAYSGGIDST--FLLYQLLKLKKNNLNFTFRAIHINHQLHPDSEK----WSDHCKKI 66 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I H++ + + + AR+ RY I + K ++ T H +DQ ET+ Sbjct: 67 CINHNIPIIIKKITINSNKNRIEEIARKKRYQAIYKIIKP--KEVLATGHNLNDQCETML 124 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + +R G G++G+ ++ Y LN + I RP L+ REDI++++ + I W ED Sbjct: 125 LALKR-----GSGITGL-SSMSYKLNTIYKIKIVRPLLKISREDIKTWIYKHKIHWIEDT 178 Query: 193 SNTDDRFERVRVRRFV----------------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 SN D + +R +R + R I++ + K+ K Q+++ K+N Sbjct: 179 SNNDTKHDRNFLRLNIIPKLKNRWPYFEKNCSRSIEILNIEKKILK-QEIKKKLN----- 232 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLF 293 KYL + SI+ IS + ID + +LR I Q ++P ++ ++ + ++F Sbjct: 233 ---KYLV--LNSILNIS-NFRYIDKNICSIILRHWIKI--NQNTMPTFKIVKEIYNKVIF 284 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 K + + I I R N L+ T+ + + +IL T Sbjct: 285 SKIDSQPKIIIKNYQIRRYNNHLYWTKKIPRIENIILIWNNT 326 >gi|260775269|ref|ZP_05884166.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260608450|gb|EEX34615.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 444 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A+SGG DS LL + + + A+ V H L A D CS Sbjct: 21 LVLALSGGLDSRVLLSLMARYCREHQQEGL---AVHVHHGLSSNADDWAEQCKQWCSEDG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ K + +AREARY +S++ + L++T DDQ ET + +R Sbjct: 78 IPFNLERVTLEKSGKSIEESAREARYQALSKYVSKED--LLLTGQHSDDQFETFLLALKR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG LS M + + L + RP L R D++++ + + W ED SN D RF+R Sbjct: 136 GSGPKG--LSAMAQAMSFGEAL-LVRPLLAVSRSDVKAYAVAEQLQWVEDESNQDTRFDR 192 Query: 202 VRVRRFV 208 +R V Sbjct: 193 NFIRHQV 199 >gi|221068471|ref|ZP_03544576.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1] gi|220713494|gb|EED68862.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1] Length = 334 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 26/198 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG+DS LL+A H+ R G+++ AI V H L+ A ++ +C+R Sbjct: 30 LAVAFSGGADSSALLLACHA----RWPGQVR--AIHVHHGLQSAADGFQQHCEQLCARHG 83 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKT---------INATLIMT-AHTFD 129 IA V + +N + Q+ AAR+ RYA + + A ++A M A D Sbjct: 84 IALKVCAIDARNVQGQS-PEDAARQGRYAALIQAAGQPWLAADGAPLDAVRSMALAQHAD 142 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ+ET+ + R G G++G+ + L RP L + +R +L R +S Sbjct: 143 DQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLQWFRPLLAVPGQALRDWLRLRGLS 197 Query: 188 WCEDPSNTDDRFERVRVR 205 W EDP+NTD + R R+R Sbjct: 198 WVEDPTNTDQGYTRNRIR 215 >gi|225022109|ref|ZP_03711301.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii ATCC 33806] gi|224945042|gb|EEG26251.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii ATCC 33806] Length = 301 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 100/211 (47%), Gaps = 28/211 (13%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67 +R VR+L +L+ +SGG+DS+GL+ A + D A+ VDH L+ ++A Sbjct: 19 LRRAVRALASEDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSAT 71 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAH 126 R V+ S A SV K + A AREARY AL++ A + + AH Sbjct: 72 VADRAVAMARSLGAEARSV---KVQVKPGNIEAQAREARYKALMT--AAAAESRSVWVAH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ET + S R A GM +SG + RPFL RR D + + + Sbjct: 127 TMDDQAETYLLGSLRGRA-VGMPVSGT-----------VIRPFLSVRRADTVAACAELGL 174 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--DLHA 215 DP N D RF RVRVR V + D+H Sbjct: 175 EVWHDPMNADPRFRRVRVRTEVLPLLADIHG 205 >gi|213852724|ref|ZP_03382256.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 311 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 132 --GSGPAGLSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188 >gi|149926802|ref|ZP_01915061.1| transcriptional regulator, GntR family protein [Limnobacter sp. MED105] gi|149824354|gb|EDM83572.1| transcriptional regulator, GntR family protein [Limnobacter sp. MED105] Length = 330 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 11/198 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R PA +VA SGG DS LL ALH + + A+ V+H ++ A Sbjct: 12 FNRHAPTPACFVVAYSGGVDSTVLLHALHVM-------GLPLHAVHVNHQIQTQADAWEA 64 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + C + + + + K +GL AR RY I K +++ AH DDQ Sbjct: 65 HCKSQCEQWGVPFTALRVKVEPSDSGLEGQARVERYRAIFNWMKANQHHVLLCAHHRDDQ 124 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNIS 187 LETV ++ R +G+G + D +L + RP L C + + + + + Sbjct: 125 LETVLLQLLRGSGLRGVGGMRAVGPVGVDRHLHPELLLCRPLLNCSKPSLLDYARENRLQ 184 Query: 188 WCEDPSNTDDRFERVRVR 205 EDPSN D R VR Sbjct: 185 HIEDPSNHDTALRRNWVR 202 >gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16] gi|61216430|sp|Q5WAE0|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16] Length = 469 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE+ R F ++LVAVSGG DSM LL + ++ R K+ + V+H LR E Sbjct: 9 IENNRLFGME----TNVLVAVSGGPDSMALLAIMANL---REKWKLNLFGVHVNHRLRGE 61 Query: 65 TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + V +RL + +V V+ ++ G AAR RY + + ++AT Sbjct: 62 ESNKDAELVQSFSARLGVPCNVKDVDVAAFKAEHHVGTQQAARALRYQVFQGEMERVHAT 121 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DD++ET +M+ R + G+ T + N ++RP L + I ++ Sbjct: 122 VLLTAHHGDDEVETAFMKLTR--GTTPLTKLGIAATRPF-ANGVLARPLLEETKRSIVAY 178 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 ++ I + D SN D + R R R Sbjct: 179 CHEKAIPYRIDQSNFSDAYTRNRFR 203 >gi|28209970|ref|NP_780914.1| cell cycle protein mesJ [Clostridium tetani E88] gi|61216641|sp|Q899H5|TILS_CLOTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28202405|gb|AAO34851.1| cell cycle protein mesJ [Clostridium tetani E88] Length = 467 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG DSM LL L+ + + + I A ++HCLR + A ++ +YV + C + Sbjct: 21 IIVGVSGGPDSMCLLHILYRLRDEYNLNII---AAHINHCLRGKDADNDEKYVENFCKKY 77 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V K A RE RY ++ N I AH +DQ ET+ Sbjct: 78 DIDFYSTKIDVGKLAKKENISFEVAGRECRYDFFNKLKLKFNCDKIALAHNSNDQCETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G G+ G+ N++I RP + R+ I + + + D +N + Sbjct: 138 MRIMR-----GTGIEGLAGIKAIRDNIYI-RPIIEASRKQIEDYCEEHELEARIDKTNLE 191 Query: 197 DRFERVRVR 205 + R +VR Sbjct: 192 SIYARNKVR 200 >gi|293418073|ref|ZP_06660695.1| tilS [Escherichia coli B185] gi|291430791|gb|EFF03789.1| tilS [Escherichia coli B185] Length = 431 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPCEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|258627367|ref|ZP_05722151.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603] gi|258580405|gb|EEW05370.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603] Length = 440 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 19/204 (9%) Query: 12 FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65 FV+ L YP LV A+SGG DS LL L + G+ +F A+ V H L Sbjct: 8 FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A V+ C I+ + + + + AREARY +S+H + TL++ Sbjct: 61 ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQGH-LARPLLTVSRQDIEAYAMQK 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +SW D SN D R+ER +R + Sbjct: 176 KLSWVTDESNLDTRYERNFLRHHI 199 >gi|270290204|ref|ZP_06196430.1| tilS/hprT [Pediococcus acidilactici 7_4] gi|270281741|gb|EFA27573.1| tilS/hprT [Pediococcus acidilactici 7_4] Length = 457 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 13/190 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VAVS G DS L+ AL L+ + + + V+H LR + E ++ C++ Sbjct: 20 APVIVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEDFLRQWCAK 76 Query: 80 LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ W + P TG+ AAAR RY ++ + NAT ++TAH +Q E+ M+ Sbjct: 77 RRLMFVSTKWPRELHPDTGVEAAARRFRYDFFAKVMQRYNATTLLTAHNATEQAESFLMQ 136 Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS G + + + RPFL+ + + + + +++W ED +N Sbjct: 137 VVR-----GGWLSQLRGTPEERSFATGRLV-RPFLKISKPTLVALAQENHLTWFEDETNQ 190 Query: 196 DDRFERVRVR 205 D + R RVR Sbjct: 191 QDDYLRNRVR 200 >gi|163789070|ref|ZP_02183514.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1] gi|159875734|gb|EDP69794.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1] Length = 439 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 25/198 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 + +L+A+SGG DS+ L H ++ F+ + LR E + + +V ++ Sbjct: 18 ESKLLIAISGGIDSVVLAHLCHQF-------QLNFTLAHCNFNLRGEESNADEDFVLELA 70 Query: 78 SRLRIAHSVVSWKNSKPQT-------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + V +N QT + AARE RY +E A+ + I+TAH DD Sbjct: 71 DQLNVE---VFIQNFDTQTYADENKRSIQMAARELRYDWFTELAEQLKFDYILTAHHADD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G GL+G+ T + ++N I RP L+ RE I S+ + I W E Sbjct: 128 NLETFLINFTR-----GTGLNGL--TGIPEINDNIVRPLLQFSREQIESYANENAIKWRE 180 Query: 191 DPSNTDDRFERVRVRRFV 208 D SN+ ++ R ++R V Sbjct: 181 DSSNSSRKYLRNKLRHEV 198 >gi|301646513|ref|ZP_07246387.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1] gi|301075266|gb|EFK90072.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1] Length = 432 Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + Q ++ W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM 574] Length = 475 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 17/209 (8%) Query: 6 IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E VR + +V P ++V VSGG DS+ LL L+ + R I ++H Sbjct: 4 LEKVRAEIIRHKMVQPGDLVVVGVSGGPDSVALLHVLYCL---RDELGISLHVAHLNHMF 60 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E A+++ +V D+ ++L I +V V K AAREARY + + Sbjct: 61 RGEEAEEDASFVQDLAAKLGIPCTVEERDVPAYARKNHLSSEVAAREARYRFFRDVLQAT 120 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + + AH DDQ E V M R G GL G+ ++I RP L RR+DI Sbjct: 121 GGSKLALAHHADDQAELVLMNILR-----GTGLKGLSGMWPVRDQVYI-RPMLEVRRKDI 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRR 206 + N+S+ D SN + + R R+R+ Sbjct: 175 EQYCHDHNLSFRIDSSNLKNIYLRNRIRQ 203 >gi|307136788|ref|ZP_07496144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli H736] gi|331640642|ref|ZP_08341790.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H736] gi|331040388|gb|EGI12595.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H736] Length = 432 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + Q ++ W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|261380143|ref|ZP_05984716.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703] gi|284796980|gb|EFC52327.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703] Length = 441 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 85/324 (26%), Positives = 139/324 (42%), Gaps = 36/324 (11%) Query: 19 PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P H + V +SGG DS+ LL LH + R F A+ V H L A ++ D Sbjct: 21 PNHTVFEVGLSGGLDSVVLLHLLHRM---REFRHFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL +A V GL AAAR ARY S+ + I I+ AH +DQ+ET Sbjct: 78 CQRLDVALRVCRVNVQNQGKGLEAAARAARYQAFSDGLRKI----IVLAHHHNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + R +GM + + ++ +W RP L R+++ + Q +S+ ED SN D Sbjct: 134 LSAVRGGGLRGMAAMPVWRNLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNED 191 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTVHMR 247 + +R ++R+ L ++ F+ ++ N ++ +Y + Sbjct: 192 SGY----LRNWMRNQALPQWQQRIPNFEQ-QICANVRLLQEDLQLLDELIESEYQRISPN 246 Query: 248 SIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I +IS Q + LL+Y LR SLP Y S+ L++ + +++ Sbjct: 247 GIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQLNL 300 Query: 305 --GRVVIDRRANFLWITRAVRNLP 326 G +V R F+ + LP Sbjct: 301 PDGELVAYRDKLFVCQESEFQKLP 324 >gi|16128181|ref|NP_414730.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89107068|ref|AP_000848.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. W3110] gi|170079824|ref|YP_001729144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238899586|ref|YP_002925382.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952] gi|256025500|ref|ZP_05439365.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 4_1_40B] gi|300949778|ref|ZP_07163753.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1] gi|300956073|ref|ZP_07168397.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1] gi|301028683|ref|ZP_07191903.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1] gi|1708989|sp|P52097|TILS_ECOLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|971394|emb|CAA90751.1| mesJ [Escherichia coli] gi|1122208|dbj|BAA08428.1| YaeN [Escherichia coli W3110] gi|1552765|gb|AAB08617.1| hypothetical [Escherichia coli] gi|1786386|gb|AAC73299.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. MG1655] gi|4902929|dbj|BAA77863.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K12 substr. W3110] gi|47230786|tpd|FAA00003.1| TPA: tRNA-Ile lysidine synthetase [Escherichia coli] gi|169887659|gb|ACB01366.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238863712|gb|ACR65710.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952] gi|260450609|gb|ACX41031.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1] gi|299878282|gb|EFI86493.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1] gi|300317067|gb|EFJ66851.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1] gi|300450843|gb|EFK14463.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1] gi|315134878|dbj|BAJ42037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1] gi|315616327|gb|EFU96945.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 3431] gi|323939936|gb|EGB36134.1| PP-loop family protein [Escherichia coli E482] gi|332341521|gb|AEE54855.1| tRNA(Ile)-lysidine synthetase TilS [Escherichia coli UMNK88] Length = 432 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + Q ++ W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|296134924|ref|YP_003642166.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12] gi|295795046|gb|ADG29836.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12] Length = 350 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG+DS LL+A ++ +G + A+ V+H L+ +A+ ++ + C+ L Sbjct: 47 IGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHGLQTSAQLFAQHCAQACAALD 101 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A++ + + + L AREARY +++ A+ N +++ A DDQ+ET+ + Sbjct: 102 VAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCAVVLLAQHGDDQVETLLLALL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G L+ M + +RP L C ++RS+L + +S+ +DP N D F Sbjct: 162 RGAGPRG--LAAM-PAQMQRHGCSFARPLLDCGAAELRSWLKSQAVSFLDDPMNADPAFR 218 Query: 201 RVRVR 205 R R+R Sbjct: 219 RSRIR 223 >gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330] gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12] gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330] gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12] Length = 481 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DSM LL L + + R G + ++H LRE + +E Y+ C + Sbjct: 33 ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W+N +T + AAR RY + + +MTAH DDQ+ETV M+ R Sbjct: 90 LPLYVSVWENP-AKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVLMKIIR 148 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + SG+ + + RP L +E++ ++ + + + ED +N +R Sbjct: 149 --GGQLSTFSGIKGVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 205 Query: 202 VRVRRFV 208 R+R V Sbjct: 206 NRLRHLV 212 >gi|46446273|ref|YP_007638.1| hypothetical protein pc0639 [Candidatus Protochlamydia amoebophila UWE25] gi|61216530|sp|Q6MDI6|TILS_PARUW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46399914|emb|CAF23363.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 458 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 7/207 (3%) Query: 3 LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ I V+ F++ +L+A+SGG+DS+ L L L+ R G + F VDH Sbjct: 11 LNVINQVKRFIKKYCKSTQPLLLALSGGADSLSLFYCL---LACRLEGILSFHVAHVDHG 67 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE + E + ++ + ++ + + S+ L A R+ R E N Sbjct: 68 WREESAKEATILKNLAEQHQVPYHQLKIDLSQLAGNLEDACRKQRQKFFKEICLQNNLQA 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + H +DQ+ETV R G+ + + +D + RP L ++++I +FL Sbjct: 128 VCLGHQENDQVETVLKRILE--GSHWSHFDGLKERMWHD-QVQFLRPLLGIQKDEILAFL 184 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ED +N D+RF R R+RR + Sbjct: 185 KGNQLKAFEDGTNCDERFMRARMRRTI 211 >gi|169797140|ref|YP_001714933.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE] gi|169150067|emb|CAM87961.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE] Length = 467 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + K AI +DH L++ + + V+ + L I Sbjct: 34 LIGCSGGMDSMLLLHLMAQIFPQ------KIRAIYIDHQLQDQSAEWAEVVATQATILNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K L A AR+ARY +H + +++ AH DQ ETV +R Sbjct: 88 PYIIQ--KVQIANGNLEAQARQARYQAYQQHLQ--ENEILLLAHHQQDQAETVILR---- 139 Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ I Y ++ I RPFL RE I + Q + + +DP N D+ ++ Sbjct: 140 -LLSGAGVDGLAAMQAIDYRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYD 198 Query: 201 RVRVRR 206 RV R Sbjct: 199 RVWCRE 204 >gi|165976971|ref|YP_001652564.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150871|ref|YP_001969396.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264222|ref|ZP_07545813.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226695531|sp|B3GYM3|TILS_ACTP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695532|sp|B0BRD5|TILS_ACTPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|165877072|gb|ABY70120.1| probable cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916002|gb|ACE62254.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870468|gb|EFN02221.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 419 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 36/348 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352 + R + L++T + P P + T+ DG + Q+L DS+I Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346 >gi|218547643|ref|YP_002381434.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469] gi|218355184|emb|CAQ87791.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469] Length = 432 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVMH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + + V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICHQWHVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|219684916|ref|ZP_03539857.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr] gi|219671654|gb|EED28710.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr] Length = 440 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATL 121 E+ +V C IA V + K+ + G+ AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGISIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIPG-----VNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NIS+ D +N D + R RVR Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204 >gi|160874614|ref|YP_001553930.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195] gi|160860136|gb|ABX48670.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195] gi|315266855|gb|ADT93708.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS678] Length = 491 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L R + + + V H L + A ++ Sbjct: 24 AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V N P+ L A AR+ RY I H + +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFER 201 SN DD+++R Sbjct: 197 ESNQDDKYDR 206 >gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733] gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1] gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733] gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1] Length = 484 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DSM LL L + + R G + ++H LRE + +E Y+ C + Sbjct: 36 ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W+N +T + AAR RY + + +MTAH DDQ+ETV M+ R Sbjct: 93 LPLYVSVWENP-AKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVLMKIIR 151 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + SG+ + + RP L +E++ ++ + + + ED +N +R Sbjct: 152 --GGQLSTFSGIKGVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 208 Query: 202 VRVRRFV 208 R+R V Sbjct: 209 NRLRHLV 215 >gi|332520627|ref|ZP_08397089.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4] gi|332043980|gb|EGI80175.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4] Length = 438 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 32/241 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSD 75 A IL+AVSGG DS+ +L L S L+ I++ HC LRE D + +V + Sbjct: 19 AKILIAVSGGLDSV-VLTHLCSKLN---------LNIALAHCNFNLRENESDTDEAFVLE 68 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L I V + ++ + AAR RY + A+ + I+TAH DD Sbjct: 69 LAKTLDIEAFVQHFNTEAYAKAEKSSIQMAARTLRYNWFFDLARQLQFDYILTAHHADDN 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LETV + R G G+ G+ T + + N I RP L+ RE + + +NI+W ED Sbjct: 129 LETVLINLTR-----GTGIEGL--TGIPERNENIVRPLLKFSRESLEYYAKSKNIAWRED 181 Query: 192 PSNTDDRFERVRVRRFV----RDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 SN ++ R ++R V ++I+ L + + +D + V +V+ ++ + + Sbjct: 182 SSNASTKYLRNKLRHDVIPILKEINPTLLKNVETTLDNLKDTKAIVQESVSAVLKRAIIQ 241 Query: 245 H 245 H Sbjct: 242 H 242 >gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii] gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii] Length = 461 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 14/187 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRI 82 +AVSGG DS+ LL LH + + + + ++ LR D + +V+ +C RL + Sbjct: 1 MAVSGGPDSVALLSILHQLAP---AWNLLLTVVHCNYGLRGAESDGDASFVAALCRRLEL 57 Query: 83 AHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V + + + L A AREARY L + + A + HT DDQ ETV +R Sbjct: 58 PCHIRRLTVDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADDQAETVLLR 117 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G GL G+ +L++ RP L R++I ++L +S+ D SN Sbjct: 118 MLR-----GTGLRGLAGMPHIRESLFV-RPLLSRSRQEILAYLQAVGLSYRTDSSNAKSI 171 Query: 199 FERVRVR 205 + R RVR Sbjct: 172 YLRNRVR 178 >gi|163783225|ref|ZP_02178219.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] gi|159881559|gb|EDP75069.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] Length = 317 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 15/191 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVC- 77 + +LVA SGG DS+ L+ AL L R F +K S +H LR+ A +E + + Sbjct: 25 SSLLVAFSGGVDSVSLVDAL---LELRDFLNLKKLSLAHFNHRLRKEADEEEEFCREFAR 81 Query: 78 SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 SR + + V + L ARE RYA + + LI TAH +D +ET Sbjct: 82 SRELDIFVGAEDVGEVARREGRNLEEVARELRYAFLRKVKNERGYDLIATAHHLNDLVET 141 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + +G GL G + + + RP +RE+I S+ R + W ED SN Sbjct: 142 ALI-----WLSRGAGLEGFLAFEPREGD--VVRPLYGVKREEILSYAEARGLRWVEDTSN 194 Query: 195 TDDRFERVRVR 205 TD RF R RVR Sbjct: 195 TDPRFFRNRVR 205 >gi|78485607|ref|YP_391532.1| PP-loop [Thiomicrospira crunogena XCL-2] gi|123555425|sp|Q31G65|TILS_THICR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|78363893|gb|ABB41858.1| tRNA(Ile)-lysidine synthetase [Thiomicrospira crunogena XCL-2] Length = 420 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 19/226 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P LVA SGG DS +L AL +S +S A+ ++H L+ + C Sbjct: 20 PVQFLVAFSGGLDSTVMLDALCKHVSPQSI-----HAVYINHGLQPESNQWADACKKACE 74 Query: 79 RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL + V + S + G+ A AR+ RY + +++ T+++TAH DQ ET+ + Sbjct: 75 RLGVKFESVDVQVSDISRQGIEAVARQKRYEAL--YSRVTKGTILLTAHHQRDQAETLLL 132 Query: 138 RSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 R G G+SG+ + L + L RP L + I+S+ Q + W ED Sbjct: 133 NMAR-----GAGISGLSGMPYVKNIQLNEQTLQHCRPLLNVDYDAIQSYAKQYRLDWVED 187 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 SN + + R +R V HA F +N ++A+L Sbjct: 188 SSNQELDYRRNYLRHEVLPKIRHAWPFSDANFAKSAHHLNESLALL 233 >gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165] gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165] Length = 648 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A E R V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + + Q GL AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|217974044|ref|YP_002358795.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223] gi|217499179|gb|ACK47372.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223] Length = 496 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L R + + + V H L + A ++ Sbjct: 24 AQSLAPSCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V N P+ L A AR+ RY I H + +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFER 201 SN DD+++R Sbjct: 197 ESNQDDKYDR 206 >gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519] gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii] Length = 464 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 18/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ILVA+SGG DS+ LL AL + ++ IK A ++H +R E KD + Y + +C Sbjct: 22 ILVALSGGPDSVCLLHALKKL---ETYYNIKIYAAHLNHKIRGIEAQKDAL-YAAKLCDE 77 Query: 80 LRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + A V ++ K T L AAR+ RY ++ E I A I AH DDQ ET Sbjct: 78 LDVPFFVKAIDVPAYAKEKKMT-LEEAARKLRYDMLFEVKNRIGAKKIAVAHNLDDQAET 136 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V MR R G G++G+ + Y + RP + + +I S+ + ++ D +N Sbjct: 137 VIMRLIR-----GTGITGL-KGMDYKRGDGVIRPLMDISKANIVSYCDENKLNPRIDYTN 190 Query: 195 TDDRFERVRVR 205 + + R ++R Sbjct: 191 LETEYTRNKIR 201 >gi|219685944|ref|ZP_03540742.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04] gi|219672518|gb|EED29559.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04] Length = 440 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA V + K+ + G + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIPG-----VNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NIS+ D +N D + R RVR Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204 >gi|152999993|ref|YP_001365674.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185] gi|151364611|gb|ABS07611.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185] Length = 491 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L R + + + V H L + A ++ Sbjct: 24 AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V N P+ L A AR+ RY I H + +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFER 201 SN DD+++R Sbjct: 197 ESNQDDKYDR 206 >gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 459 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V VSGG DS+ LI L S ++ ++ + V+H LR A ++ +V VC + Sbjct: 21 IVVGVSGGPDSI-CLINLLSEFKEKY--NLRLYVVHVNHMLRGIDADNDASFVEGVCRGM 77 Query: 81 RIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + K + GL AA RE RY E + +NA I AH +D ET+ Sbjct: 78 GIPFFLFKEDVKKYALEKGLSEEAAGREVRYKAFHEIFEKVNADKIAVAHNKNDVAETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G +G+ + +N I RP +R R++I +L +NI + D +N + Sbjct: 138 LNILR-----GAGTAGLIG--IKPVNGNIIRPLIRTTRDEILDYLKSKNIKFVVDATNKE 190 Query: 197 DRFERVRVR 205 D + R R+R Sbjct: 191 DVYRRNRIR 199 >gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e] gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 1/2a F6854] gi|224500330|ref|ZP_03668679.1| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland 1988] gi|224503461|ref|ZP_03671768.1| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL R2-561] gi|254900996|ref|ZP_05260920.1| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161] gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818] gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900] gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578] gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923] gi|61216688|sp|Q8YAC7|TILS_LISMO RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes EGD-e] gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 1/2a F6854] gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900] gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578] gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923] gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818] Length = 648 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A E R V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + + Q GL AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|294338861|emb|CAZ87195.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Thiomonas sp. 3As] Length = 350 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 9/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG+DS LL+A ++ +G + A+ V+H L+ +A+ ++ + C+ L Sbjct: 47 IGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHGLQTSAQLFAQHCAQACAALD 101 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A++ + + + L AREARY +++ A+ N +++ A DDQ+ET+ + Sbjct: 102 VAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCAVVLLAQHGDDQVETLLLALL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G L+ M + +RP L C ++RS+L + +S+ +DP N D F Sbjct: 162 RGAGPRG--LAAM-PAQMQRHGCSFARPLLDCGAAELRSWLKAQAVSFLDDPMNADPAFR 218 Query: 201 RVRVR 205 R R+R Sbjct: 219 RSRIR 223 >gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|61216585|sp|Q7N8N0|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 442 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 17/199 (8%) Query: 10 RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R FV + L ILV SGG DS +L+ L ++ KI+ AI + H L A Sbjct: 7 RLFVTLAKQLGEYKKILVGFSGGLDS-SVLLHLLVNWRNQHNQKIQLRAIHIHHGLNLKA 65 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +C ++ Q G+ AAAR+ARY + + +++TA Sbjct: 66 DQWIEHCQLICDDWQVEFHSARVTIDARQKGIEAAARDARYQVFKSELQ--KDEVLVTAQ 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 DDQ ET + +R G+ ++ DT+L RP L R ++ + Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASMPSIAVFADTLLL-------RPLLDYSRNELEKYAS 176 Query: 183 QRNISWCEDPSNTDDRFER 201 + ++W ED SN DDR++R Sbjct: 177 KHRLNWIEDDSNQDDRYDR 195 >gi|307250818|ref|ZP_07532747.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857177|gb|EFM89304.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 419 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 98/401 (24%), Positives = 168/401 (41%), Gaps = 37/401 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 + R + L++T + P P + T+ DG + Q+L DS+I + + Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358 Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 P + Q L+ K+ GKP+ + + +P Sbjct: 359 PEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVPA 399 >gi|254385667|ref|ZP_05000990.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptomyces sp. Mg1] gi|194344535|gb|EDX25501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptomyces sp. Mg1] Length = 343 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 17/192 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ ++VDH L+ + V + LR Sbjct: 38 VLVACSGGADSMALASAL--AFEAPKLG-IRAGGVTVDHGLQPGSDLRAAEVVTRMTALR 94 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM---- 137 + + G AAAR+ARY + E A + A ++ HT DDQ ETV + Sbjct: 95 LDPVESVAVRVGREGGPEAAARDARYGALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 154 Query: 138 ----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 RS E G G T Y RPFL+ R+ R + +++ +DP Sbjct: 155 GSGIRSLSGMPEVSAGPGGPGRTNRY------RRPFLQVDRQTARKACMVQSLPVWDDPH 208 Query: 194 NTDDRFERVRVR 205 N D + R R+R Sbjct: 209 NLDPAYTRSRLR 220 >gi|119504829|ref|ZP_01626907.1| cell cycle protein [marine gamma proteobacterium HTCC2080] gi|119459434|gb|EAW40531.1| cell cycle protein [marine gamma proteobacterium HTCC2080] Length = 426 Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 23/282 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS+ LL H+ L + A+ + H L A V DVC +L Sbjct: 1 MLGLSGGCDSIALLHLAHAWLDHVGPERRPALRAVHIHHGLAPEADAWVEVCHDVCQQLS 60 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 IA SV P T G+ AAAR ARY++ + K+ +++ AH DDQ+ETV Sbjct: 61 IALSVY---RVTPVTDEGKGIEAAARTARYSVYRQELKS--GEVLLLAHHADDQVETVLQ 115 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R KG +GM + +SRP L R I+ + R +++ D SN D Sbjct: 116 RLLRGTGPKG--FAGMPRRRELGQGV-LSRPLLGVARSVIKRWADNRELAYVIDASNQDM 172 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 RF+R F+R L L +++ R + A L L H +A++ +++ Sbjct: 173 RFDRG----FLRTEILPKL---EQRWPGYRESIRRATE-LQSGLLRQHNAQPLALTANVM 224 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + Y L+ SA G ++ +R + ++L + + R Sbjct: 225 G--EPAMAYHLKDSAQDSRGVLAYSLHRWLSELLLDVPAAAR 264 >gi|315179362|gb|ADT86276.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii NCTC 11218] Length = 432 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 11/193 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H ++A SGG DS LL + +R +I A+ V H L A + + C Sbjct: 18 HFVLAFSGGVDSRVLLALIARYRQER---EISVQAVHVHHGLSVNADEWAQRCQHWCQAA 74 Query: 81 RIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ VS + ++ + AR+ARYA ++ H +TL++ H DDQLET + Sbjct: 75 HVPLAIERVSLATASGES-IEKLARDARYAALATHMHP-GSTLLLGQHA-DDQLETFLLA 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG L+ M + + RP L R I F +Q ++ W ED SN D+R Sbjct: 132 LKRGSGPKG--LAAMAQQAPFSCGQ-LLRPLLSVSRAQIEYFAMQHHLQWVEDESNQDER 188 Query: 199 FERVRVRRFVRDI 211 +ER +R V I Sbjct: 189 YERNFLRHRVTPI 201 >gi|220927542|ref|YP_002504451.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10] gi|219997870|gb|ACL74471.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10] Length = 481 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 89/194 (45%), Gaps = 17/194 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75 Y I+V +SGG DS+ LL L+S+ ++ IK + V+H LR E +DE +V Sbjct: 25 YGEGIVVGISGGYDSVCLLHILYSISNELG---IKIYPVHVNHMLRGDEALRDE-NFVKS 80 Query: 76 VCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 CS L I H ++ K + L A R ARY + S A A+ I AH+ +DQ Sbjct: 81 FCSSLGLEVYIKHIDIAKKAKTEKISLEEAGRNARYEVFSLVAGERGASKIAVAHSRNDQ 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ MR R G GL G+ N I RP L R I ++ + D Sbjct: 141 AETILMRICR-----GTGLEGLRGMEYKRDN--IIRPLLDADRSQIEEYVNGIGVEAVTD 193 Query: 192 PSNTDDRFERVRVR 205 SN + R R+R Sbjct: 194 SSNLHTDYFRNRIR 207 >gi|297243772|ref|ZP_06927702.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD] gi|296888193|gb|EFH26935.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD] Length = 372 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 11/180 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L AL SV+ S G I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V S G +AAR+ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARKARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +D A G+ ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLTREDTTGICEDLGISWWDDPTNGDD 217 >gi|283783579|ref|YP_003374333.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05] gi|283441060|gb|ADB13526.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05] Length = 372 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 11/180 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L AL SV+ S G I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V S G +AAR ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +D A G+ ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDD 217 >gi|169634324|ref|YP_001708060.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii SDF] gi|260556042|ref|ZP_05828261.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606] gi|169153116|emb|CAP02190.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii] gi|260410097|gb|EEX03396.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606] Length = 467 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + K AI +DH L++ + + V+ + L I Sbjct: 34 LIGCSGGMDSMLLLHLMAQIFPQ------KIRAIYIDHQLQDQSAEWAEVVATQATILNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K L A AR+ARY +H + +++ AH DQ ETV +R Sbjct: 88 PYIIQ--KVQIANGNLEAQARQARYQAYQQHLQ--ENEILLLAHHQQDQAETVILR---- 139 Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ I Y ++ I RPFL RE I + Q + + +DP N D+ ++ Sbjct: 140 -LLSGAGVDGLAAMQAIDYRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYD 198 Query: 201 RVRVRR 206 RV R Sbjct: 199 RVWCRE 204 >gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC] gi|61216617|sp|Q822B9|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC] Length = 317 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 25/203 (12%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ LL L S + F+A+ VDH RE++ E Sbjct: 15 FFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVAFTAVHVDHGWRESSYREAE 67 Query: 72 YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C + I H ++ S+ P+ AAR RY L + K N I AH Sbjct: 68 ELKIRCEEEGIPILIDHVPPEYRTSRDPEN----AARRYRYTLFHKVCKEQNLAGIFLAH 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 +DQ ETV R +G LS GM Y+ ++ + RP L ++ I + L Sbjct: 124 HANDQAETVLKR-----LLEGASLSNLKGMSPKTSYE-DIPLFRPLLHIPKQIIINVLDA 177 Query: 184 RNISWCEDPSNTDDRFERVRVRR 206 N+ +D +NTD+R+ R R+R+ Sbjct: 178 ENVPCVQDITNTDERYLRARMRK 200 >gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326] gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326] Length = 434 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 26/196 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78 +++ SGG DS LL L+ R FG+ + A+ V H L A R+ ++ C+ Sbjct: 21 LVIGFSGGVDSQVLL-----TLAAR-FGQQYQCECLAVHVHHGLSGNAD---RW-AEQCA 70 Query: 79 RLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + AH VV +PQ + A AREARY +++H + + +++T DDQL Sbjct: 71 QW--AHERGVPFVVEKVILQPQGKSIEACAREARYQALAQHLE--HGDVLLTGQHADDQL 126 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG+ C + N ++ RP L R I +F ++ + W ED Sbjct: 127 ETFLLAVKRGSGPKGLSAMAQCRSFA---NGYMLRPLLEVNRSTIEAFAVEHQLQWAEDE 183 Query: 193 SNTDDRFERVRVRRFV 208 SN D RF+R +R V Sbjct: 184 SNQDTRFDRNYIRHQV 199 >gi|298252658|ref|ZP_06976452.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1] gi|297533022|gb|EFH71906.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1] Length = 372 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 11/180 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L AL SV+ S G I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V S G +AAR ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +D A G+ ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDD 217 >gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603] gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603] Length = 432 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 21/217 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++AVS G DSM LL H +L++ K + I ++H LR+ + +E + C Sbjct: 13 HIVLAVSTGIDSMCLL---HLLLNEYQHTYSKLTCIHINHGLRQASIEEEAFFKTYCEEH 69 Query: 81 RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + S+ + +R+ RY K + A++++TAH DDQ+ET++ Sbjct: 70 GIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLLTAHHRDDQIETIFY 129 Query: 138 R--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + R + +G++ + Y L RP L + I+S+ Q N+ + ED SN Sbjct: 130 RLFTGR-FTRSHLGIAYTSQRVSYQL----VRPMLDISKATIKSYQNQYNVPFFEDVSNH 184 Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225 ++ + R +R + + +D+ L LK+K + D Sbjct: 185 NNVYVRNDIRNRIIPAVMDNQQLDVAHL-LKLKSWHD 220 >gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 277 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 7/202 (3%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + FF + + AH ++ VSGG DSM LL + FS + V H LRETA Sbjct: 12 ISFFQQHRLETAHAVIGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +V C I + K + GL AAAR ARY ++E A+ +I+ AH Sbjct: 72 DAEFVEQYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALAERARA-KGGVILVAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNI 186 D+LET MR R G+G ++N + ++RP + + +I + + Sbjct: 131 AQDELETFIMRLLRGAGPGGLGAM----RPEAEMNGVRVARPLIAVEKGEIDRYAEAHGV 186 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 ED +N D RF R RVR+ V Sbjct: 187 PHVEDETNEDPRFFRNRVRQVV 208 >gi|110639392|ref|YP_679602.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406] gi|110282073|gb|ABG60259.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 450 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 IL+ VSGG DS+ VL D F K FS V HC LR + D + ++VSD+ Sbjct: 21 ILLTVSGGIDSI--------VLFDL-FVKAGFS-FGVAHCNFSLRGSESDGDEQFVSDLA 70 Query: 78 SRLRIAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I+ V + S + + AARE RY E A+ I TAH +D +E Sbjct: 71 IKQGISIHVKRFDTSAFASNNALSIQMAARELRYTWFKELARQYGYAAIATAHQLNDIIE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R G G++G+ + + N I RP L R+ IRS+ + N+ W ED S Sbjct: 131 TTLINLSR-----GTGIAGLHG--IPEKNGEIIRPLLFAGRDKIRSYAEENNLKWREDSS 183 Query: 194 NTDDRFERVRVRR 206 N ++++ R +R Sbjct: 184 NMEEKYARNLIRH 196 >gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453] gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453] Length = 476 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 13/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I+VAVSGG DS+ LL LH + + + ++ V H R + E V ++ RL Sbjct: 29 IVVAVSGGPDSVALLHVLHEISLNHT--PLRLICAHVHHGFRTESDQEAEMVRELAERLG 86 Query: 81 ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 A + + G AARE RY + + A+ NA + AH DDQ ETV M Sbjct: 87 LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTAQKYNARSVALAHHADDQAETVLM 146 Query: 138 RSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G GL G+ + + + RPFLR + DI + D SN Sbjct: 147 RLLR-----GSGLPGLAGIKFKRTEKKVELIRPFLRMYKADIVELCRVCGFQYAVDNSNL 201 Query: 196 DDRFERVRVR 205 ++ R +R Sbjct: 202 QTKYRRNAIR 211 >gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana] Length = 662 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 25/213 (11%) Query: 22 ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRY 72 I + VSGG DSM L + L V +++ G I AI VDH LR+ +KDE Sbjct: 87 IALGVSGGPDSMALCVLTAKWKTQGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAEL 144 Query: 73 VSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFD 129 V S++ I + S W + +P+ G L AARE RY +IS +++ AH D Sbjct: 145 VCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHAD 204 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIR 178 DQ E +R R G+ + I + + ++ + P L +ED+ Sbjct: 205 DQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVGPLLDFWKEDMY 264 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 W EDP+N F R R+R + ++ Sbjct: 265 KICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297 >gi|330721718|gb|EGG99715.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC2047] Length = 401 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 14/245 (5%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 A+ V H L + A D + VC +L + +V + PQ L RE RY + Sbjct: 11 LEALHVHHGLSDYADDWAAHCQYVCDQLSVPLTVRHVRAEMPQASLENQLRELRYQVF-- 68 Query: 113 HAKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +N L+ AH DDQ+ET+ +R R +G L+GM + I RP L Sbjct: 69 -INVLNGGDLLALAHHADDQVETMMLRMLRGTGPQG--LAGMPSQRCLGQGMLI-RPLLE 124 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR-DIDLHALYLKMKKFQDLRVKV 230 R ++ S+ +SW ED SN D RF+R +R V + Y + F++ +V Sbjct: 125 HCRSELESYAQHHGLSWIEDDSNADTRFDRNYLRHEVMPKLARRWPYYRKNFFRNAQVNK 184 Query: 231 N--NAVAMLIPKYLTVHMRSIIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + +++ + + L M++ A + +L + L LLR I + LPGY+ Sbjct: 185 DALSSLDYFLERELQPQMQANEAGLDCEWLLGFPAALQINLLRGWLNI--RSLPLPGYKH 242 Query: 287 MERVM 291 +++V+ Sbjct: 243 LQQVL 247 >gi|317126809|ref|YP_004093091.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522] gi|315471757|gb|ADU28360.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522] Length = 471 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 34/306 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I+VAVSGG DSM LL L V D ++ V+H LR E+ D +V C Sbjct: 21 IIVAVSGGPDSMALLHYLQMVKRDYH---LQLIVAHVEHGLRGVESVND-CNFVKSYCEE 76 Query: 80 LRI-----AHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ +V++ K + GL AAR +RY + + AT + AH DDQ+ Sbjct: 77 NKLDFFLYEPNVMAMKE---ELGLSTQEAARFSRYQWFEKLMEEHKATKLAFAHHGDDQV 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M+ R + L G+ + N I RPFL + DI + + +I + D Sbjct: 134 ETVLMKQVRGSV---VSLQGIPVKRQFG-NGMIIRPFLCVEKSDILEYCQEHHIQYRIDQ 189 Query: 193 SNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVA-MLIPKYLTVH 245 SN D ++R R R+++ + +H + + + + ++A M + K + H Sbjct: 190 SNDSDNYKRNRFRKYILPFLKEENPSIHKTFQRQSEISTEENEFLQSLAKMEVEKAIDYH 249 Query: 246 MRSIIAIS-QDILNIDSTL----LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 S I IS Q +L + +TL L +L + G +I++ + S+ + L K+ G Sbjct: 250 QESEICISNQRLLQMPTTLQRRALHLILNYLSLNSGREITVHHFDSI--IELIKKASPSG 307 Query: 301 CVSIGR 306 + + + Sbjct: 308 MLHLPK 313 >gi|295698551|ref|YP_003603206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia pediculicola USDA] gi|291157496|gb|ADD79941.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia pediculicola USDA] Length = 454 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 18/204 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHC 61 P ++ +SL +LV SGG DS LL H +++ R KIK AI ++H Sbjct: 7 EPYNLLKLISKSLNPFKKVLVGFSGGMDSTVLL---HILMTLRKLKKIKIDLRAIHINHH 63 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L++ + + +C +I+ K S + G+ + +R RY + + + Sbjct: 64 LQKESNLWESHCKKICDLWKISFLSKRVKISSKKYGVESESRAIRYREMRNVLRP--KEV 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDI 177 IMTAH DDQ ET + +R G G SG+ T +D N I RP L + + Sbjct: 122 IMTAHHIDDQAETFLLALKR-----GSGPSGLSSMKFITSFHDKN--IVRPLLSFEKTQL 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFER 201 + + + +SW ED SN D F+R Sbjct: 175 KKYAEENRLSWIEDQSNFQDLFDR 198 >gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15] gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15] Length = 481 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DSM LL L + + R G + ++H LRE + +E Y+ C + Sbjct: 33 ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W++ +T + AAR RY + + +MTAH DDQ+ETV M+ R Sbjct: 90 LPLYVSVWEDP-AKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIETVLMKIIR 148 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + SG+ + + + RP L +E++ ++ + + + ED +N +R Sbjct: 149 --GGQLSTFSGIKEVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 205 Query: 202 VRVRRFV 208 R+R V Sbjct: 206 NRLRHLV 212 >gi|90416187|ref|ZP_01224119.1| mesJ protein [marine gamma proteobacterium HTCC2207] gi|90331912|gb|EAS47126.1| mesJ protein [marine gamma proteobacterium HTCC2207] Length = 458 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 16/191 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILV SGG DS + L + +A+ + H L A D ++ +C L Sbjct: 35 QILVGFSGGLDS-----TVLLHLLCELLPPERITAVHIHHGLSANADDWQQHAKTLCHSL 89 Query: 81 R---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I+ SVV +K GL +AAR+ARY + EH I L++ H DDQ+ETV Sbjct: 90 GVRLISESVVV---NKTGAGLESAARDARYKVFEEH--LIEDGLLLLGHHADDQVETVLF 144 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + GLSG+ T I RP L + ++++ + + W ED SN + Sbjct: 145 RLLRGSGAR--GLSGIPQTRAVGAGHLI-RPLLNQPKSRLQAYAEAQQLVWIEDESNQQE 201 Query: 198 RFERVRVRRFV 208 +F+R +R V Sbjct: 202 QFDRNYLRNSV 212 >gi|238918797|ref|YP_002932311.1| tRNA(Ile)-lysidine synthetase [Edwardsiella ictaluri 93-146] gi|259533714|sp|C5B7T0|TILS_EDWI9 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|238868365|gb|ACR68076.1| tRNA(Ile) [Edwardsiella ictaluri 93-146] Length = 439 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL AL L ++ + V H L A V + VC + Sbjct: 20 LLVAFSGGLDSTVLLHAL-VQLRASCLPHLRLRVVHVHHGLSHFADQWVDHCESVCYLWQ 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V+ + + + AAAR+ARY I+E + ++TA DDQ ET + +R Sbjct: 79 VPLHVLHVQVDTQRNSVEAAARDARYQAIAELIDSRET--LLTAQHLDDQCETFLLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M ++ + + + RP L RE + ++ ++SW ED SN D RF+R Sbjct: 137 --GSGPTGLSAMAQSMPFFVCEQL-RPLLDISREQLTAYAQVHDLSWVEDDSNADARFDR 193 >gi|268318837|ref|YP_003292493.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785] gi|262397212|emb|CAX66226.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785] Length = 431 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A SGG DS+ LL L + L + S I +DHCLR+ + E + + + S L+ Sbjct: 20 FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W PQ G+ A ARE RYA ++E + ++TAH DD +E + ++ Sbjct: 77 VKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYQTDYLLTAHHGDDLIENILLKFI 136 Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R D AE + + G + + + RP ++ ++++ + ++ + ED +N +D Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNFED 190 Query: 198 RFERVRVRRFV 208 R R+R V Sbjct: 191 DTLRNRLRHHV 201 >gi|296118975|ref|ZP_06837548.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM 20306] gi|295968073|gb|EFG81325.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM 20306] Length = 340 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 19/211 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +VR + L +P + V +SGG+DS+ L+ AL ++ A+ +DH Sbjct: 14 FLAVRGAVRESLEQLGWPEQVYVGLSGGADSLALVAAL---CAEVRVATTSVHALCIDHG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-AAAREARYALISEHAKTINAT 120 +++ + D + + R SV+ + + G M A AR RY +E A + T Sbjct: 71 VQDGSGDIAKQAAAHAERWGATASVIPVEVVRDSAGGMEAEARRVRYQAFAEVAGEM--T 128 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDI 177 + AHT +DQ ET+ + S L G T+ + + I RP L RR D Sbjct: 129 PVFVAHTAEDQAETLLLSS----------LRGHISTMAFATEIEGAKIYRPLLGIRRADT 178 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + DP N + F RV +R+ V Sbjct: 179 LGACAELGVQAWHDPQNEREDFRRVAIRKTV 209 >gi|194439921|ref|ZP_03071983.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1] gi|253774785|ref|YP_003037616.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160307|ref|YP_003043415.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606] gi|312970289|ref|ZP_07784471.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70] gi|194421167|gb|EDX37192.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1] gi|242376019|emb|CAQ30702.1| tRNA[Ile]-lysidine synthetase [Escherichia coli BL21(DE3)] gi|253325829|gb|ACT30431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972208|gb|ACT37879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606] gi|253976417|gb|ACT42087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BL21(DE3)] gi|310337787|gb|EFQ02898.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70] gi|323959949|gb|EGB55596.1| PP-loop family protein [Escherichia coli H489] gi|323970667|gb|EGB65923.1| PP-loop family protein [Escherichia coli TA007] Length = 432 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 95/188 (50%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DS+ LL+ H+VL + F + +VDH LR + E V+ +C+ Sbjct: 29 VGLAVSGGPDSLALLLLAHAVLPAQGF-----AVATVDHGLRAESAGEAAMVAHLCAERG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IAH + + P + + AR ARY + + T ++TAH DDQ ET+ MR R Sbjct: 84 IAHDTLR-ISLAPGSAIQERARAARYRALEDWRVGRGLTALVTAHHADDQAETLVMRLNR 142 Query: 142 DYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G GL G+ + + RP L R D+ + L R I+ +DPSN D Sbjct: 143 -----GAGLRGLAAMRARVPVPGGEGVLLRPLLGWARADLAALLGDRGIAAVDDPSNRDV 197 Query: 198 RFERVRVR 205 RFERVRVR Sbjct: 198 RFERVRVR 205 >gi|300932146|ref|ZP_07147429.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1] gi|300460083|gb|EFK23576.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1] Length = 432 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|298208541|ref|YP_003716720.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559] gi|83848464|gb|EAP86333.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559] Length = 436 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 25/195 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 +L+AVSGG DSM LL K I++ HC LR D + V + Sbjct: 21 LLLAVSGGLDSMVLL----------HLCKASGLNIAIAHCNFNLRGKESDADTLLVKEEA 70 Query: 78 SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 RL+I V + + + + AARE RY E K + ++TAH +D +E Sbjct: 71 DRLQITCHVEHFNTESYAADIKVSIQIAARELRYQWFDEVIKEFDYNYVLTAHHLNDDVE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R G GL G+ + +N I RP L RE+I ++ L I W ED S Sbjct: 131 TFIINLTR-----GTGLDGLSG--IPKVNNTIIRPLLPFSREEIHTYALAEKIIWREDAS 183 Query: 194 NTDDRFERVRVRRFV 208 N D++ R +R + Sbjct: 184 NASDKYLRNSIRHHI 198 >gi|23336235|ref|ZP_00121460.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Bifidobacterium longum DJO10A] gi|189440708|ref|YP_001955789.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A] gi|226695535|sp|B3DR08|TILS_BIFLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189429143|gb|ACD99291.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A] Length = 388 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ + VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V +N+ Q GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + + +RP L R + + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215 >gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054] Length = 375 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DSM L A + G ++ A++VDH L++ + + V+ L Sbjct: 77 VLVAVSGGADSMALATA--TAFEAPKLG-LRVGAVTVDHGLQDGSAERAEQVAVRLRELG 133 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A +V + P+ AAR+ARYA + A+ A ++ HT DDQ ETV + Sbjct: 134 LDPVEAVAVRVGREGGPEN----AARDARYAALDLAAERHGALAVLLGHTRDDQAETVLL 189 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + L+GM RP L R R ++I +DP NTD Sbjct: 190 GLARGSGAR--SLAGMPAQ-----KGRYRRPLLELDRAATRQACSAQSIPVWDDPHNTDP 242 Query: 198 RFERVRVRRFV 208 + R RVR V Sbjct: 243 AYTRSRVRHEV 253 >gi|303253037|ref|ZP_07339189.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307262025|ref|ZP_07543680.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302648101|gb|EFL78305.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306868308|gb|EFN00130.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 419 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 36/348 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352 + R + L++T + P P + T+ DG + Q+L DS+I Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346 >gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980] gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980] Length = 484 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DSM LL L + + R G + ++H LRE + +E Y+ C + Sbjct: 36 ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W++ +T + AAR RY + + +MTAH DDQ+ETV M+ R Sbjct: 93 LPLYVSVWEDP-AKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIETVLMKIIR 151 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + SG+ + + + RP L +E++ ++ + + + ED +N +R Sbjct: 152 --GGQLSTFSGIKEVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 208 Query: 202 VRVRRFV 208 R+R V Sbjct: 209 NRLRHLV 215 >gi|153005200|ref|YP_001379525.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5] gi|152028773|gb|ABS26541.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5] Length = 436 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 10/200 (5%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E++R R L +LVA+S G DS LL +L + + +A+ VDH LR Sbjct: 13 LETIRRR-RLLAAGDRVLVALSAGPDSTALLASLAELRDAGCLPGMALAALYVDHGLRPG 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 DE VC RL + V + + A AR ARYA + A AT I T Sbjct: 72 GADEAGSAKSVCERLGVTFESVRVRIGP--GNVQAEARRARYAALRTAALRAGATRIATG 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DQ ETV +R R + GL+G+ I RP + R + +L +R Sbjct: 130 HTRTDQAETVLLRLLRGAGAR--GLAGIPPR-----RGAIVRPLIDRSRAEGLVYLAERG 182 Query: 186 ISWCEDPSNTDDRFERVRVR 205 + W DP+N RF R R+R Sbjct: 183 VPWRTDPTNATPRFARNRLR 202 >gi|110802414|ref|YP_699728.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101] gi|110682915|gb|ABG86285.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101] Length = 469 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L + + I+ A V+HCLR E+A + YV ++C L Sbjct: 21 VLVALSGGPDSVCLLHILSEL---KELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A RE RY E + I AH +DQ ET+ Sbjct: 78 NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR+ R G G+ G+ ++I RP L RR++I + N++ D +N + Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLTPRIDETNLE 191 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 192 EIYSRNKIR 200 >gi|320196935|gb|EFW71556.1| tRNA(Ile)-lysidine synthetase [Escherichia coli WV_060327] Length = 437 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 9/182 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ILVA SGG DS + LH ++ R+ + AI V H L A V++ ++C + Sbjct: 14 QILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKHCENICQQ 70 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + ++ G+ A AR+ARY + + +++TA DDQ ET + Sbjct: 71 WQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLAL 128 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G LS M + + I RP L R ++ + Q ++ W ED SN DD + Sbjct: 129 KRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWARQYDLRWIEDESNQDDFY 185 Query: 200 ER 201 +R Sbjct: 186 DR 187 >gi|307248585|ref|ZP_07530600.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854935|gb|EFM87123.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 413 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 36/348 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++ +SGG DS+ LL L + + A+ + H L A + VC RL Sbjct: 19 NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ G+ A AR ARY I E + N L+ TAH DDQ ET + + Sbjct: 72 KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M + + N I RP L + I + LQ+ +W ED SN D ++ Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257 R F+R+ L + + + F + + A ML+ + L ++ S+ L Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241 Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 NI++ F L+R+ CG Q +P + +++ ++ K + + Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299 Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352 + R + L++T + P P + T+ DG + Q+L DS+I Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346 >gi|254832460|ref|ZP_05237115.1| hypothetical protein Lmon1_13981 [Listeria monocytogenes 10403S] Length = 648 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A E R V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSDLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + + Q GL AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|282860306|ref|ZP_06269375.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010] gi|282586903|gb|EFB92139.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010] Length = 455 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 27/192 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 LVA+SGG+DS+ LL+ LH K+ + A+ HC LR E+ +DE ++ D+C Sbjct: 22 LVALSGGADSVCLLLILH---------KLGY-AVEAAHCNFKLRGEESNRDE-QFCIDLC 70 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I ++ + + + + AAR+ RY + + I+A I H DD +E Sbjct: 71 KRQNIKIHLIHFDTREYAALKKISIEMAARDLRYRYFEQLCRDIDAAGICVGHHQDDSVE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G G+ G+ T + +N I RP L C +EDI ++L ++ D S Sbjct: 131 TILLNLVR-----GTGIKGL--TGIKPINGLIIRPLLVCSKEDINAYLKAEGATYITDSS 183 Query: 194 NTDDRFERVRVR 205 N R ++R Sbjct: 184 NLVPDVMRNKIR 195 >gi|323705585|ref|ZP_08117159.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535062|gb|EGB24839.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 460 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 I+V VSGG DS+ LL L + + K+K + V+H LR D + +V C + Sbjct: 21 IVVGVSGGPDSICLLNLLLEI---KERYKLKLFVVHVNHMLRGADADSDALFVEKFCKGI 77 Query: 81 RIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + + + GL AA RE RY+ ++ K + I AH +D ETV Sbjct: 78 NIPFFLFKEDVRRYAEENGLSEEAAGREIRYSAFNKVLKEVGGNKIAIAHNKNDVAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G +G+ + +N I RP ++ +R +I +L +N+ + ED +N + Sbjct: 138 LNILR-----GAGTTGLVG--IKPVNGCIIRPLIQTKRREIIDYLNSKNLEFVEDVTNKE 190 Query: 197 DRFERVRVR 205 D + R R+R Sbjct: 191 DAYRRNRIR 199 >gi|160886327|ref|ZP_02067330.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483] gi|156108212|gb|EDO09957.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483] Length = 426 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA+SGG+DS+ LL LH+ F +E+ +DE+ +V +C R+ Sbjct: 22 ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + K A ++ AH DD +ET+ + Sbjct: 76 IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254 + R ++R L+ L L Q++ V N + + + T++ + I + Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237 Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308 I+ + + L++ A AI + G+ S + L + GK+ C RV+ Sbjct: 238 KIITAEGIRICDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297 Query: 309 IDRRANFLWITRAVRNLPTL 328 DR FL I A TL Sbjct: 298 KDRE--FLLIETAESENETL 315 >gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28] Length = 275 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A E R V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + + Q GL AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|260173564|ref|ZP_05759976.1| putative cell-cycle protein [Bacteroides sp. D2] gi|315921832|ref|ZP_07918072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2] gi|313695707|gb|EFS32542.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2] Length = 426 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA+SGG+DS+ LL LH+ F +E+ +DE+ +V +C R+ Sbjct: 22 ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + K A ++ AH DD +ET+ + Sbjct: 76 IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254 + R ++R L+ L L Q++ V N + + + T++ + I + Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237 Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308 I+ + + L++ A AI + G+ S + L + GK+ C RV+ Sbjct: 238 KIITAEGIRISDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297 Query: 309 IDRRANFLWITRAVRNLPTL 328 DR FL I A TL Sbjct: 298 KDRE--FLLIETAESENETL 315 >gi|238897452|ref|YP_002923129.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259533725|sp|C4K338|TILS_HAMD5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|229465207|gb|ACQ66981.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 457 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 13/208 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----- 62 S+ +++L LVA SGG DS LL L S L D++ K+ AI L Sbjct: 8 SLTTLLKNLGKHHKFLVAFSGGLDSTVLLHGLLS-LRDQNHLKLNIRAIHTHEKLIHRPE 66 Query: 63 --RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + A + + C + ++ VV + G+ AAAR RY + S K Sbjct: 67 NWSKDADQRLTHCQSQCEQWKVPLEVVKMEVEPRGKGIEAAARTVRYQIFSNALK--KDE 124 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++T H +DQ ETV + +R GLSGM + + + RP L R ++ + Sbjct: 125 VLLTGHHQNDQCETVLLALKRGSGP--AGLSGMPLAMPLGQSQ-LLRPQLSFSRHSLQLY 181 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 L++ I W ED N +DRF+R +RR + Sbjct: 182 ALEKGILWMEDEDNQNDRFDRNFLRRHI 209 >gi|327399626|ref|YP_004340495.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411] gi|327182255|gb|AEA34436.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411] Length = 322 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VAVSGG DS+ +L+ L+++ + ++ + + +H LRE A+DE +V + S L Sbjct: 24 IGVAVSGGPDSVFMLMLLNTLAQKYT---LELAVLHFNHKLREEAEDEEIFVGKLASSLG 80 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A V + + + + AR RY E +N +I T HT DD ET+ M Sbjct: 81 LKFLKAEYDVGAFSRQNKLSIEDGARRKRYEFFYESKTKLNLDVIATGHTKDDVAETLLM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + G+ + L + RP L +++I +FL + NI + D SN D Sbjct: 141 NLIRGSSTDGL-------SSLKPKRGFFIRPILCFEKQEILNFLNKNNIQYKIDNSNADT 193 Query: 198 RFERVRVR 205 F+R ++R Sbjct: 194 YFKRNKIR 201 >gi|210623231|ref|ZP_03293670.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275] gi|210153768|gb|EEA84774.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275] Length = 461 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 16/194 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75 Y I+V +SGG DS+ LL L+ + R+ +K A ++H +R E KD + +VS+ Sbjct: 18 YGDKIIVGLSGGPDSVCLLHILNRLKESRN---LKIYAAHLNHQIRGIEAQKDAL-FVSE 73 Query: 76 VCSRLRIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +C L I + S K + GL AR RY + E + A I H +DQ Sbjct: 74 LCDSLEIPVFIKSVDVPKYCEEKGLSLEEGARNIRYDMFYEIKRRTGANKIAIGHNMNDQ 133 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV MR R G GL G+ I Y I RP L R+DI ++ Q + D Sbjct: 134 AETVMMRIMR-----GTGLQGLR-GIEYTRENGIIRPILDIERKDIEAYCEQHELHPKID 187 Query: 192 PSNTDDRFERVRVR 205 +N + + R R+R Sbjct: 188 QTNLESIYTRNRIR 201 >gi|260767808|ref|ZP_05876743.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972] gi|260617317|gb|EEX42501.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972] Length = 432 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + ++A SGG DS LL + +R I A+ V H L A + + C Sbjct: 18 YFVLAFSGGVDSRVLLALIARYRQERD---ISVQAVHVHHGLSVNADEWAQRCQHWCQAA 74 Query: 81 RIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ VS + ++ + AREARYA ++ H +TL++ H DDQLET + Sbjct: 75 HVPLAIERVSLATASGES-IEKLAREARYAALATHMHP-GSTLLLGQHA-DDQLETFLLA 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG L+ M + + RP L R I F LQ ++ W ED SN D+R Sbjct: 132 LKRGSGPKG--LASMAQQAPFSCGQ-LLRPLLSVSRAQIEHFALQHHLQWVEDESNQDER 188 Query: 199 FERVRVRRFVRDI 211 +ER +R V I Sbjct: 189 YERNFLRHRVTPI 201 >gi|94310033|ref|YP_583243.1| tRNA(Ile)-lysidine synthetase-like protein [Cupriavidus metallidurans CH34] gi|93353885|gb|ABF07974.1| tRNA(Ile)-lysidine synthetase [Cupriavidus metallidurans CH34] Length = 487 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 6/190 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA+SGG DS+ LL A L+ ++ + A+ V H L+ A D R+ + C Sbjct: 47 PVTVAVALSGGRDSVALLHATREALAA-TWPLARLVALHVHHGLQAQADDWDRFCTARCG 105 Query: 79 RLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ S + G+ AAAR AR+ + + A L++ AH DDQ+ETV + Sbjct: 106 DLQVPLSSARVTVQAATGEGIEAAARRARHEALGRMCREQGARLLLFAHHRDDQVETVLL 165 Query: 138 RSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R GM +GM D ++ + RP+L R +I + + + W +DPSN Sbjct: 166 RLFRGTGVAGM--AGMPARRPLDERGDIQLVRPWLGVTRAEIDDYCAWQGLRWIDDPSNA 223 Query: 196 DDRFERVRVR 205 D RF R +R Sbjct: 224 DTRFARNALR 233 >gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 440 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 14/227 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG+DS+ L ++L+ R + + VDH LR + DE + + Sbjct: 41 VAIAVSGGADSLAL-----ALLTRRW--RRAVVGLVVDHGLRAESADEAARTVRCLAEMD 93 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ + + AR RY + + + ++ H DDQ ETV MR + Sbjct: 94 IPARLLRLRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQAETVMMRQRA 153 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G L+ M + ++ RP L + D+ + L I W EDPSNTD R ER Sbjct: 154 SSGPDG--LAAMAQAV-AGTDVRFVRPLLGVCKADLYATLRHAGIDWVEDPSNTDLRTER 210 Query: 202 VRVRRFVR-DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 R R + D L + L+ + R +A ++L H R Sbjct: 211 ARARHALSTDAQLRRVCLQTAQQAGGRRMARDAQDA---QWLAAHAR 254 >gi|238792737|ref|ZP_04636368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909] gi|238727845|gb|EEQ19368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909] Length = 455 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 6/185 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LV SGG DS LL L L + ++K AI + H L A V++ C + Sbjct: 24 HVLVGFSGGLDSSVLLHLL-VSLRQQLLPELKVRAIHIHHGLNPLADCWVKHCQQQCDQW 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + VV G+ AAAR ARY S H +++TA DDQ ET + + Sbjct: 83 DVPLEVVRVNIDPRHNGIEAAARTARYQAFSSHLAA--NEVLLTAQHLDDQCETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GLS M + + + + RP L RE + ++ + + W ED SN D+RF+ Sbjct: 141 RGSGPA--GLSSMAGRMPFAHSQ-LLRPLLAFSRETLENYAQVQQLRWIEDDSNQDNRFD 197 Query: 201 RVRVR 205 R +R Sbjct: 198 RNFLR 202 >gi|114562464|ref|YP_749977.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400] gi|114333757|gb|ABI71139.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L L ++ I I V H L A V++ + + Sbjct: 41 LVLAYSGGVDSEVLACGLSALAHKHPH--IACLLIHVHHGLSANADIWVQHCITRANHYQ 98 Query: 82 IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + K K P+ L A AR+ARY + +++TAH DDQLET+ + + Sbjct: 99 LPVQIERVKVEKGPRQSLEAQARDARYQAFDRYLNP--GDILLTAHHQDDQLETLLLALK 156 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+ G I W+ RP L R+ I F Q+ +S ED SN DD F+ Sbjct: 157 RGQGPKGLAAMG---AIQAYKQAWLVRPLLDISRDQIEQFAAQKQLSHIEDESNQDDSFD 213 Query: 201 RVRVR 205 R +R Sbjct: 214 RNFLR 218 >gi|253988142|ref|YP_003039498.1| tRNA (Ile)-lysidine synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica] Length = 442 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%) Query: 10 RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R FV + L ILV SGG DS LL L + ++ ++ AI + H L A Sbjct: 7 RLFVTLTKQLGEHKKILVGFSGGLDSSVLLYLLVN-WRNQYNQNVQLRAIHIHHGLNIKA 65 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V++ +C ++ Q G+ AAAR+ARY + + +++TA Sbjct: 66 DQWVKHCQQICDDWQVEFFFEKVTIDARQKGIEAAARDARYQVFKRELQ--KDEILVTAQ 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 DDQ ET + +R G+ ++ DT+L RP L R ++ + Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASMPPIAVFADTLLL-------RPLLGYSRNELEIYAN 176 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 + ++W ED SN DDR++R +R Sbjct: 177 EHCLNWIEDDSNQDDRYDRNFLR 199 >gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1] gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1] Length = 476 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 16/194 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDVCS- 78 +++ VSGG+DS+ LL LH + F+ I +H LR A+ E +V Sbjct: 23 LVLGVSGGADSLCLLDVLH---------RAGFNLIVAHFNHRLRPEAESEADWVCAQAQQ 73 Query: 79 ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R+ + V + + AAREARY+ + A + A + AHT DQ+ETV Sbjct: 74 RGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAVAHTASDQVETV 133 Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M R KG+ G+ + + RP L RE++ ++ +R ++W EDPSN Sbjct: 134 LMHLIRGTGHKGLTGMPYRGFLNQFSTTTPLVRPMLSIWREEVLAYCHERGLTWLEDPSN 193 Query: 195 TDDRFERVRVRRFV 208 D RF R R+R V Sbjct: 194 RDVRFTRNRLRNEV 207 >gi|292492700|ref|YP_003528139.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4] gi|291581295|gb|ADE15752.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4] Length = 442 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 6/197 (3%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+R L + VA SGG DS LL +L V I SA VDH L + + Sbjct: 11 FLRQLHFCHGYRVAYSGGLDSQVLLYSL--VQLRPQLPGIALSAFHVDHGLSSRSGQWSQ 68 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + CS L + V+ N++P G A + + ++T DDQ Sbjct: 69 HCRETCSELGVGCEVIK-VNARPAKGESPEAAAREARYAALRTRVEKGECLLTGQHQDDQ 127 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV ++ R G L+ M + + L + RP L R +++++ Q + W ED Sbjct: 128 AETVLLQLLRGAGPHG--LAAMARVMPFGEGL-LLRPLLPFSRAELKAYAEQEGLVWIED 184 Query: 192 PSNTDDRFERVRVRRFV 208 PSN D F+R +R V Sbjct: 185 PSNFDVGFDRNYLRHHV 201 >gi|146292467|ref|YP_001182891.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32] gi|145564157|gb|ABP75092.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32] Length = 465 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + +G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLR-------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + +R + I H V P+ + A AR RY I +H + + Sbjct: 68 D---AWAQHCITRGQHYGLPTIIEHVQV---KQGPRMSIEAEARRMRYQAIEQHVGSDD- 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 L++TAH DDQLET+ + +R KG+ G ++ + + RP L RE I + Sbjct: 121 -LLLTAHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEA 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + + ED SN DD+++R +R Sbjct: 177 YASANGLVHIEDESNQDDKYDRNFLR 202 >gi|304409578|ref|ZP_07391198.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183] gi|307303936|ref|ZP_07583689.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175] gi|304352096|gb|EFM16494.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183] gi|306912834|gb|EFN43257.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175] Length = 486 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 8/190 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L R + + + V H L + A+ ++ Sbjct: 24 AQSLAPRCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNAEVWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V N P+ L A AR+ RY I H + +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQVLAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFER 201 SN DD+++R Sbjct: 197 ESNQDDKYDR 206 >gi|271499513|ref|YP_003332538.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586] gi|270343068|gb|ACZ75833.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586] Length = 448 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 8/186 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS + LH + R + A+ V H L A + C ++ Sbjct: 26 LVAYSGGLDST---VLLHVMTRLRLPRALSLRAVYVHHGLSVNADAWAEHCRTQCINWQV 82 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V++ K G+ AAAR ARY ++ +H ++TA DDQ ET + +R Sbjct: 83 PFNVLAVKVDARDGGIEAAARTARYQVLHQH--LCEGETLLTAQHQDDQSETFLLALKRG 140 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ S L + L RP L RE + + + W ED SN D+R++R Sbjct: 141 SGPAGLA-SMAASATLNGVTL--LRPLLGISREQLEGYARAHQLVWVEDDSNADERYDRN 197 Query: 203 RVRRFV 208 +RR V Sbjct: 198 FLRRQV 203 >gi|50119989|ref|YP_049156.1| tRNA(Ile)-lysidine synthetase [Pectobacterium atrosepticum SCRI1043] gi|61216498|sp|Q6D8C5|TILS_ERWCT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49610515|emb|CAG73960.1| cell cycle protein [Pectobacterium atrosepticum SCRI1043] Length = 440 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS + LH +++ R A + H L A + C R + Sbjct: 24 ILLAYSGGLDSS---VLLHLLVTVRQRSGQTIRAAYIHHGLNPLADSWAEHCRQQCERWQ 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S ++ G+ AAAR ARY + H K ++TA DDQ ET + +R Sbjct: 81 VPFSSLAVTVEAQNGGIEAAARTARYQALQVHLK--EGETLLTAQHLDDQSETFLLALKR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + RP L R + ++ + + W ED SN D+RF+R Sbjct: 139 GSGPAG--LSAMAANSFLGHHR-LVRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERFDR 195 Query: 202 VRVRRFV 208 +RR + Sbjct: 196 NFLRRQI 202 >gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii] gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii] Length = 1167 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 33/273 (12%) Query: 22 ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +AVSGG+DSM L L+AL S K ++VDH R + +EV V + L Sbjct: 49 VAIAVSGGADSMALCLLALEWTES-----KSLVFGLTVDHGFRRESAEEVVQVREWLRTL 103 Query: 81 RIAHSVV--SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ SW+ P G L +AR+ARY L+ E + A +++TAH DDQ E + Sbjct: 104 GMECEILKCSWQGGFPSPGHLQESARKARYELLQEACQRNGAGVLLTAHHADDQAELFAL 163 Query: 138 RSQRDYAEKGMGLSGMCD-------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 R R + G+ + +I+ L + RP L +++D+ + + SW E Sbjct: 164 RLSRCSGDNGLACMALASELFPIMPSIIEASRLLLVRPLLDLQKKDLYNVCHVADQSWIE 223 Query: 191 DPSNTDDRFERVRVRRFVRDI---------DLHALYLKMKKFQDLRVKVNNAVAMLIP-- 239 DP+N + R ++R+ + + DL A Y KK ++ V+ + + Sbjct: 224 DPTNCKTIYARNKIRKELVSLSDSMRSEVQDLIATY--RKKRSEIHVQTKMLMTTFVHID 281 Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 Y V ++A + D ++ TLL +LR Sbjct: 282 LDYGYAVVDAEGLLAETNDTTVLE-TLLASVLR 313 >gi|283783975|ref|YP_003363840.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168] gi|282947429|emb|CBG86975.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168] Length = 432 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 9/188 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYV 73 SL ILVA SGG DS + LH ++ R+ +++ AI + H L A + V + Sbjct: 9 SLFNRPQILVAFSGGLDST---VLLHQLVQWRALRPELRLRAIHIHHGLSPHADEWVAHC 65 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 VC+R ++ V + + G+ A AR+ARY ++ ++ TA DDQ E Sbjct: 66 EAVCARWQVPLMVRRVQLADEGLGIEALARQARYQAFAQ--ALAPGEILATAQHLDDQCE 123 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G LS M + + + + RP L R + + + ++ W ED S Sbjct: 124 TFLLALKRGSGPAG--LSAMAEVSAFADSR-LVRPLLTQSRTALEQWAREHSLCWIEDES 180 Query: 194 NTDDRFER 201 N DD ++R Sbjct: 181 NQDDAYDR 188 >gi|212703024|ref|ZP_03311152.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098] gi|212673612|gb|EEB34095.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098] Length = 351 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG+DS LL + +L+ R ++ + +VDH LR + ++ +V+ +C RI Sbjct: 38 LLAVSGGADSTALLFIM-VLLAPRHNWRLHVA--TVDHQLRPESAEDTAFVARLCQDWRI 94 Query: 83 AHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +++ ++ Q GL AAR ARYAL+ + AT I+ H D E +R Sbjct: 95 PCRILTADVARLARQDGLGTEEAARLARYALLEQARLACGATAILLGHHRSDVAEDQLLR 154 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G + D + RP LR ++ L I W ED SN D R Sbjct: 155 FLR-----GTGWPALGGMRAEDAERHLLRPLLRTDNRALKELLHHCGILWREDSSNADTR 209 Query: 199 FERVRVRRFV 208 + R R+R V Sbjct: 210 YTRNRLRHTV 219 >gi|240949808|ref|ZP_04754137.1| cell-cycle protein MesJ [Actinobacillus minor NM305] gi|240295725|gb|EER46420.1| cell-cycle protein MesJ [Actinobacillus minor NM305] Length = 423 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 15/196 (7%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +P LVA+SGG DS+ LL L+ + + AI + H L A V + Sbjct: 16 ALHFPTQKRFLVALSGGIDSVVLLYLLNQLKLE-------LRAIHIHHGLSPNADQWVTF 68 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I V + + G+ A ARE RY I E + + +++TAH DDQ+ Sbjct: 69 CQHYCQQHAIP-LCVKYVQVNGKKGIEAEAREKRYQAIREVRE--HNEVVVTAHHLDDQV 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + N I RP L + DI ++ +N+SW ED Sbjct: 126 ETFLLALKRGSGVKG--LSAM-QVVNFSQNFPIFRPLLAISKNDILTYAKSQNLSWIEDE 182 Query: 193 SNTDDRFERVRVRRFV 208 SN ++R +R V Sbjct: 183 SNQSTDYDRNFLRHKV 198 >gi|298484345|ref|ZP_07002506.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22] gi|298269499|gb|EFI11099.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22] Length = 426 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +L+A+SGG+DS+ LL LH+ F E+ +DE+ +V +C R Sbjct: 20 AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + ++ Q + AARE RY + K A +I AH DD +ET+ Sbjct: 74 TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N I RP L REDI +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1] gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1] Length = 425 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 15/193 (7%) Query: 18 YPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +P H + VAVSGG+DSM L + D + VDH LR ++ E Sbjct: 27 WPGHGVPVAVAVSGGADSMALAVLARQWRPD-------VVGLVVDHGLRAESRREAEQTI 79 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 S L ++ ++ + + + AR RYA +S + I A ++ AH DQ ET Sbjct: 80 GRLSALGLSARLLVLEGLERGPRMAERARRMRYAALSAACREIGALDLLVAHHAGDQAET 139 Query: 135 VYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V MR + GL+GM T ++D+ L RP L + + + + ++W EDPS Sbjct: 140 VMMRQHAASGDD--GLAGMALVTPMHDVRL--VRPLLSFAKPALYATVRAAGLAWVEDPS 195 Query: 194 NTDDRFERVRVRR 206 N D R R R R+ Sbjct: 196 NADLRTGRARARQ 208 >gi|237712941|ref|ZP_04543422.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409616|ref|ZP_06086156.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643471|ref|ZP_06721284.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a] gi|294807915|ref|ZP_06766696.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b] gi|229447060|gb|EEO52851.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352469|gb|EEZ01569.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641190|gb|EFF59395.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a] gi|294444913|gb|EFG13599.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b] Length = 426 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +L+A+SGG+DS+ LL LH+ F E+ +DE+ +V +C R Sbjct: 20 AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + ++ Q + AARE RY + K A +I AH DD +ET+ Sbjct: 74 TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N I RP L REDI +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|148981150|ref|ZP_01816312.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3] gi|145960977|gb|EDK26302.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3] Length = 443 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 17/283 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F +S + P ++VA SGG DS +L+ L + + +I AI V H L + A Sbjct: 12 FDQSAIKPHRLVVAFSGGVDSR-VLLELAAQYTKTH--EIDCQAIHVHHGLSDNADQWAE 68 Query: 72 YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C L + +V + + + AR+ARY H + +++T DD Sbjct: 69 QCQVWCDDLSVPLAVERVSLDVRSGESIEKLARDARYNAFKSHLR--QGDVLVTGQHVDD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET + +R KG LS M + + I RP L R +I +F + ++W E Sbjct: 127 QVETFLLALKRGSGPKG--LSSMAKVMPFS-GAHIVRPMLSVTRAEIEAFARRMGLTWVE 183 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D RF+R +R V + L + ++ ++ ML+ + L H++ + Sbjct: 184 DESNQDVRFDRNFIRHQVTPL-LTERWPSFRESVSRSAQLCAEQEMLLDELLASHLQRAL 242 Query: 251 ----AISQDILNIDSTLL-FYLLRVSAAICGGQISLPGYRSME 288 ++S ++L+ S LL LLR+ C Q ++P + ++ Sbjct: 243 GDDQSLSVEVLSEQSALLRARLLRMWLGHC--QQAMPSQKQLQ 283 >gi|300824089|ref|ZP_07104209.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7] gi|300523366|gb|EFK44435.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7] Length = 432 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|290473675|ref|YP_003466547.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004] gi|289172980|emb|CBJ79751.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004] Length = 449 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG----KIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LV SGG DS LL L + G +I+ AI + H L A V + +C Sbjct: 22 VLVGFSGGLDSTVLLHLLVQLRYQSHSGVIRDQIELRAIHIHHGLNPKADKWVEHCRQIC 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ V Q G+ AAAR+ARY + +++TA DDQ ET + Sbjct: 82 ADWKVDFRVEKVSLDIRQNGIEAAARDARYQAFQHELQ--QGEILVTAQHLDDQAETFLL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R G G +G+ + RP L R ++ ++ + + W ED SN Sbjct: 140 ALKR-----GSGPAGLSSMPSSMPFSGTTLIRPLLNASRAELETYAQTQRLQWIEDDSNQ 194 Query: 196 DDRFER 201 DDR++R Sbjct: 195 DDRYDR 200 >gi|229542263|ref|ZP_04431323.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1] gi|229326683|gb|EEN92358.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1] Length = 478 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 8/123 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 H+LVAVSGG DS+ LL H + S R ++K +A V+H LR E + ++ +V C Sbjct: 23 HLLVAVSGGPDSLALL---HFLTSRRERFRVKITAAHVNHMLRGEASCKDLLFVKSFCES 79 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI A V K + G+ AAR+ RYA ++E + A ++ H DDQ+ETV Sbjct: 80 HRIGCEAAEIPVLEKAKEEGLGIEEAARKYRYAFLAEAMEKTGANKVVLGHHGDDQMETV 139 Query: 136 YMR 138 MR Sbjct: 140 LMR 142 >gi|312792833|ref|YP_004025756.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179973|gb|ADQ40143.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 456 Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL + + + S + + ++H LR A D+ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLLNCICRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEICKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E A+ +N I+ H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ + D+ I+RP + RE+I F NI + D +N Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---IARPLINISREEIEEFARVNNIPFVVDKTNFS 191 Query: 197 DRFERVRVR 205 +++R VR Sbjct: 192 LKYKRNIVR 200 >gi|167751544|ref|ZP_02423671.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702] gi|167655352|gb|EDR99481.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702] Length = 324 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V +C L Sbjct: 26 VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 82 Query: 81 RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I S K + + L AR RY +K LI TAHT D ET+ + Sbjct: 83 DIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCETILI 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G LSG+C N I RP L REDI + + + + D +N D Sbjct: 140 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 192 Query: 198 RFERVRVRRFV 208 + R ++R V Sbjct: 193 DYTRNKIRHKV 203 >gi|295087951|emb|CBK69474.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Bacteroides xylanisolvens XB1A] Length = 426 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +L+A+SGG+DS+ LL LH+ F E+ +DE+ +V +C R Sbjct: 20 AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + ++ Q + AARE RY + K A +I AH DD +ET+ Sbjct: 74 TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N I RP L REDI +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|238855042|ref|ZP_04645370.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3] gi|260664826|ref|ZP_05865677.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii SJ-7A-US] gi|282934828|ref|ZP_06340062.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|238832286|gb|EEQ24595.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3] gi|260561309|gb|EEX27282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii SJ-7A-US] gi|281301100|gb|EFA93410.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] Length = 412 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 20/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA S G DS+ L+ +L D +K DH +RE + E + + C + + Sbjct: 20 VIVACSAGPDSLALV----DMLKDWP---LKLIVAHFDHQIREDSYLETKLLQQYCQKNK 72 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W SK AAAREARY + E AK+ +A ++TAH DD LE + ++ R Sbjct: 73 LMLCVEKW--SKHVNKTEAAAREARYNFLLELAKSWHADYLLTAHHGDDYLENILLKLIR 130 Query: 142 --DYAEKG--MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 D AE + M L +RP L + ++ +LL +++++ D +N + Sbjct: 131 SGDPAEMSSLQAVGQMAGVKL-------ARPLLYYSKAELTKYLLDKHLAFITDETNLTN 183 Query: 198 RFERVRVRRFV 208 R R+R V Sbjct: 184 ENLRNRIRHQV 194 >gi|319425769|gb|ADV53843.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens 200] Length = 465 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 12/201 (5%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + +G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ + +++ K P+ + A AR RY I +H + + L++T Sbjct: 68 DAWAQHCITRGQHYGLP-TIIEHVQVKLGPRMSIEAEARRMRYQAIEQHVGSDD--LLLT 124 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQLET+ + +R KG+ G ++ + + RP L RE I ++ Sbjct: 125 AHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEAYASAN 181 Query: 185 NISWCEDPSNTDDRFERVRVR 205 + ED SN DD+++R +R Sbjct: 182 GLVHIEDESNQDDKYDRNFLR 202 >gi|253687355|ref|YP_003016545.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753933|gb|ACT12009.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 425 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS + LH +++ R + A + H L A + C R + Sbjct: 10 ILLAYSGGLDSS---VLLHLLVAVRQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCERWQ 66 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + + G+ AAAR ARY + H + ++TA DDQ ET + +R Sbjct: 67 VSFASLPVMVEAQNGGIEAAARTARYQALQAHQQ--EGETLLTAQHLDDQSETFLLALKR 124 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ T+ + RP L R + ++ + + W ED SN D+RF+R Sbjct: 125 GSGPAGLSAMAAQSTLGQHR---LIRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERFDR 181 Query: 202 VRVRRFV 208 +RR + Sbjct: 182 NFLRRQI 188 >gi|320353156|ref|YP_004194495.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032] gi|320121658|gb|ADW17204.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032] Length = 345 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 41/202 (20%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VDH------------CLRETAK 67 ILV VSGG+DS+ L G+I + I+ VDH C++E A Sbjct: 25 ILVGVSGGADSL-----ALLHLLAALRGEISLTLIAAYVDHGLRPKETPAEWACVQEAAA 79 Query: 68 ----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + VR V+DV R ++ + L AAREARY + + A L+ Sbjct: 80 VLGINSVRAVADVHGR-----------AARQKLSLEHAAREARYQALGALIRQQGANLLA 128 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AHT DDQ E + +R R K LSGM + + RP L R+ + ++L Sbjct: 129 VAHTADDQAEEILLRLFRGGGRK--ALSGMRMRAGH-----LIRPLLATRKAMLLAYLRD 181 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 + I +C D SN D RF R R+R Sbjct: 182 QGIGYCHDSSNDDRRFLRNRIR 203 >gi|315498689|ref|YP_004087493.1| pp-loop domain protein [Asticcacaulis excentricus CB 48] gi|315416701|gb|ADU13342.1| PP-loop domain protein [Asticcacaulis excentricus CB 48] Length = 375 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108 G+ +VDH + + + R V + L + +V+ W+ KP++GL AAAR AR+ Sbjct: 11 GQRPLEVFTVDHGVNPQSAEWARGVEALGRELGLPLTVLRWEGDKPRSGLQAAARRARHH 70 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-- 166 LI + A+ + ++ H DD E MR++ G + + W Sbjct: 71 LILDAARAKDIRVLCLGHNADDVAEAAAMRAE--------GSTVGAPKLWSPAPFWPQGE 122 Query: 167 -----RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 RP L R +R +L +S+ +DP+NT+ + R RVR+ Sbjct: 123 GMFYLRPLLGVGRARLRDWLKTVGMSYVDDPANTNPAYLRARVRQ 167 >gi|66044608|ref|YP_234449.1| PP-loop [Pseudomonas syringae pv. syringae B728a] gi|63255315|gb|AAY36411.1| PP-loop [Pseudomonas syringae pv. syringae B728a] Length = 445 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLYLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCRTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY+ SE + +++T DDQ ET+ R R Sbjct: 88 FESVR-LQVEPGASLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGR-LVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|293372701|ref|ZP_06619083.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f] gi|292632510|gb|EFF51106.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f] Length = 426 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG+DS+ LL LH+ F +E+ +DE+ +V +C R+ Sbjct: 22 ILIALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + K A ++ AH DD +ET+ + Sbjct: 76 IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKKCQADVVAVAHHQDDSIETILL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254 + R ++R L+ L L Q++ V N + + + T++ + I + Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLVDTSNYLNDVATIYNKCIEETKK 237 Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308 I+ + + L++ A AI + G+ S + L + GK+ C RV+ Sbjct: 238 KIITAEGIRICDLVKEPAPEAILFEVLHPLGFNSAQIKDIAHSLHSQPGKQFCSKEWRVI 297 Query: 309 IDRRANFLWITRAVRNLPTL 328 DR FL I A TL Sbjct: 298 KDRE--FLLIETAESKNETL 315 >gi|302390905|ref|YP_003826725.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501] gi|302202982|gb|ADL11660.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501] Length = 466 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V+VSGG DS+ LL L + D + +K +DH R E ++ + YV+ ++L Sbjct: 21 VIVSVSGGPDSLALLHILWRLQDDYN---LKLHVFHLDHMFRGEESQKDAEYVAQFANKL 77 Query: 81 RIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I ++ + +TGL AAAR+ RY L +E A ++ A I DDQ ETV Sbjct: 78 SIPATIEEYDIPAYIEETGLSNQAAARKIRYELCTELADSLKADKIAIGQQADDQAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G GL G+ ++I RP L R+DI + Q + D SN Sbjct: 138 MNFLR-----GAGLDGLSGIEPIRNGIFI-RPLLEVWRKDIGDYCKQHELEPRIDSSNLK 191 Query: 197 DRFERVRVR 205 + R +VR Sbjct: 192 PVYLRNKVR 200 >gi|144227507|gb|AAZ44292.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 297 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 20/187 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 L+ VSGGSDSM LL K K + V H LR A E VS C + Sbjct: 12 LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++S+ + K + L + R RY + K N T ++ H DD LETV+++ Sbjct: 60 YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDR 198 ++ G+ + N+ I RPFL R ++ I Q+ I + +D SN + Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGK 175 Query: 199 FERVRVR 205 ++R ++R Sbjct: 176 YQRNQIR 182 >gi|291543862|emb|CBL16971.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus sp. 18P13] Length = 448 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 19/201 (9%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 ++V P + VA+SGG+DS L +L+ R I A+ V+H LR D + + Sbjct: 13 AMVQPGDTVTVALSGGADST---ALLLGLLALREQLGISLRAVHVNHHLRGAESDRDAAF 69 Query: 73 VSDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +C ++ V ++ + T AARE RYA + A + I TAHT Sbjct: 70 CAQLCEERQVPFFLGTCDVATYAAQRKHTSCEMAARELRYAQLE--ALCPPGSKIATAHT 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D ETV R R G GL+G+C + + I RP L R I FL Q++ S Sbjct: 128 ASDNTETVLERLTR-----GTGLAGLCG--IPPVRGRIIRPLLYVTRPQILGFLAQQHQS 180 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 + D +N D F R R+R V Sbjct: 181 YVTDSTNAQDAFFRNRLRHHV 201 >gi|237723186|ref|ZP_04553667.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447708|gb|EEO53499.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 426 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +L+A+SGG+DS+ LL LH+ F E+ +DE+ +V +C R Sbjct: 20 AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + ++ Q + AARE RY + K A +I AH DD +ET+ Sbjct: 74 TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N I RP L RED+ +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDVIHYLESIGQDYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|295401968|ref|ZP_06811930.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1] gi|294975970|gb|EFG51586.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1] Length = 462 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DS+ LL H S R I A VDH R + +++++ +V C Sbjct: 21 VIVGVSGGPDSLALL---HFFWSIRQKWNITLIAAHVDHMFRGKQSEEDMNFVKHFCQTR 77 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I A V + + G+ AAR+ RY E + A + H DDQ+ET+ Sbjct: 78 GIICEAAQIDVPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYLALGHHGDDQVETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R KG +G+ + +I RPFL R I ++ + I+ D SN Sbjct: 138 MRLVRGSTSKGY--AGIPVKRPFH-GGYIIRPFLAISRAHIDAYCEKHQITPRHDASNDK 194 Query: 197 DRFERVRVRRFV 208 D + R R R V Sbjct: 195 DDYTRNRFRHHV 206 >gi|197119017|ref|YP_002139444.1| tRNA(Ile) lysidine-34 synthase [Geobacter bemidjiensis Bem] gi|197088377|gb|ACH39648.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter bemidjiensis Bem] Length = 457 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 33/206 (16%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---- 68 ++L P ++VAVSGG+DS+ LL +++ G ++ ++HCLR D Sbjct: 11 QNLFQPGETVVVAVSGGADSVALL----DIMTRLECG-LRLVVAHLNHCLRGAESDADQA 65 Query: 69 ---------EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + +VS C +A + + L A R ARYA + + A+ A Sbjct: 66 FVASLADNYHLPFVSQSCDVADLAR--------RERLSLEDAGRRARYAFLEQTAEQYGA 117 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I AH DDQ ETV +R R G GLS M T L RP L+ R + Sbjct: 118 FSIALAHHQDDQAETVLIRLLR--GSGGTGLSAMAGTAGDKLK----RPLLQVSRVKLEQ 171 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 +L QR +S+ D +N D R +R Sbjct: 172 YLKQRELSYRTDSTNADTAILRNSIR 197 >gi|291557138|emb|CBL34255.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium siraeum V10Sc8a] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V +C L Sbjct: 8 VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 64 Query: 81 RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I S K + + L AR RY +K LI TAHT D ET+ + Sbjct: 65 DIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCETILI 121 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G LSG+C N I RP L REDI + + + + D +N D Sbjct: 122 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 174 Query: 198 RFERVRVRRFV 208 + R ++R V Sbjct: 175 DYTRNKIRHKV 185 >gi|323491002|ref|ZP_08096196.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2] gi|323395358|gb|EGA88210.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2] Length = 463 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 19/196 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 +LV SGG DSM LL L+S+ +D I +A+ VDH LR D+ R ++ Sbjct: 24 VLVGCSGGIDSMVLLYFLNSIKADLG---ISVAAVHVDHMLRGEESDKDRLFTEKIAKQW 80 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 SR +++ + Q R RY E K AT TAH DDQL Sbjct: 81 GIECFSRAIPIPAILEKRGGNKQQ----VCRTERYNYFLEVMKQTGATKFATAHHADDQL 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ M R + G GM + + N + RP L +E I ++ NI + ED Sbjct: 137 ETILMSGVRGSLQDGS--FGMLASRPFG-NGQLIRPLLAVVKEQISAYAKSLNIPYREDS 193 Query: 193 SNTDDRFERVRVRRFV 208 SN + + R R+R+ V Sbjct: 194 SNAEAAYTRNRLRQNV 209 >gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599] gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599] Length = 475 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 10/198 (5%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 L+ P ++V +SGG+DS LL L S+ + + K A+ ++H R E A+ + Y Sbjct: 13 GLLLPGESVVVGISGGNDSTALLHILASLNKQYQY-QWKLHAVHLNHGFRGEEARQDALY 71 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++C L + + + K G A+R+ RY L E AT + AH Sbjct: 72 AEELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLALAHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET+ R R + GL+GM +L D + + RP L R+++ + + + Sbjct: 132 DDQVETILFRFVR--GSRLNGLTGMPKRRMLADCPIELVRPLLHKTRQELEGYCREHQLV 189 Query: 188 WCEDPSNTDDRFERVRVR 205 ED SN ++ R +R Sbjct: 190 PREDSSNQSRKYTRNLLR 207 >gi|170017773|ref|YP_001728692.1| ATPase [Leuconostoc citreum KM20] gi|169804630|gb|ACA83248.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Leuconostoc citreum KM20] Length = 435 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +R + A I+VAVSGG DS+ LL AL L D K V++ LR+ + + + Sbjct: 9 LRRYAWEATIIVAVSGGVDSVVLLHALRQYLPD-----TKLVVAHVNYHLRKESDGDALF 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + + + A + W + P + ARE RY + A I+ AH +DQ Sbjct: 64 VRQLATTYQAAFEQIDW-SIMPSHAVEEQARELRYRFFARLAGQYRTKTIVVAHHANDQA 122 Query: 133 ETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV ++ R E+ G+S +L RPFL ++ + ++ Q ++SW ED Sbjct: 123 ETVLLKLIRGGRLEQLAGMSVKKRLVL--------RPFLGITKQQLITYAQQHHLSWRED 174 Query: 192 PSNTD 196 +N D Sbjct: 175 DTNFD 179 >gi|167032176|ref|YP_001667407.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1] gi|166858664|gb|ABY97071.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1] Length = 427 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 22/192 (11%) Query: 24 VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +A SGG DS LL +L+D R+ AI V H L+ A + +C L Sbjct: 15 IAYSGGLDSTVLL----HLLADYARNHASPPLRAIHVHHGLQTAADAWPAHCQAICDNLG 70 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140 I V+ + S P + AAR+ARYA + T+ ++ T DDQ ET+ R Sbjct: 71 IELQVIHVQVS-PGASVEQAARDARYAAFKQ---TLGPGDILFTGQHRDDQAETLLFRLL 126 Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ L +L +RP L C R+ ++ + ++W EDPSNTD Sbjct: 127 R-----GAGLRGLAAMPGQRALGQGSL--ARPLLGCARQQLQDYASAHRLAWIEDPSNTD 179 Query: 197 DRFERVRVRRFV 208 F R +R V Sbjct: 180 THFARNYLRGEV 191 >gi|304373319|ref|YP_003856528.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1] gi|304309510|gb|ADM21990.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1] Length = 292 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 15/185 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL + L +++ A V++ LR + + + V C + +I Sbjct: 11 LLAVSGGPDSMFLL----NKLKNKNI-----VAAHVNYHLRADSNVDQQIVEKFCQKHKI 61 Query: 83 AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S K + + AR RY S+ K N ++ AH DD +ETV+++ + Sbjct: 62 KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ LY++N I+R FL + +E+I + L ++NI + D SN+ D ++ Sbjct: 122 KKEVNYWGIKK--KNFLYNMN--ITRIFLFKYFKEEIINLLNKKNIHFAIDSSNSKDIYQ 177 Query: 201 RVRVR 205 R ++R Sbjct: 178 RNKIR 182 >gi|291530325|emb|CBK95910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium siraeum 70/3] Length = 306 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V +C L Sbjct: 8 VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 64 Query: 81 RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I S K + + L AR RY +K LI TAHT D ET+ + Sbjct: 65 DIPLYTASIKVNDLRQKHDSLEECARRLRYEFFESISKD---RLIATAHTASDNCETILI 121 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G LSG+C N I RP L REDI + + + + D +N D Sbjct: 122 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 174 Query: 198 RFERVRVRRFV 208 + R ++R V Sbjct: 175 DYTRNKIRHKV 185 >gi|116617526|ref|YP_817897.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096373|gb|ABJ61524.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 430 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + ++ +P ++VAVSGG DS+ L+ AL S K V++ LRE + Sbjct: 3 EKILQTIQQYNWPETVIVAVSGGVDSVVLVHAL-------SKTKANLVIAHVNYRLREES 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D+ +V + ++ W++ P + AAR+ RY E A+ + I AH Sbjct: 56 DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 114 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R + MG GM N + RPFL ++++ ++ ++ Sbjct: 115 HADDQAETVLLKMIRGGRLQQMG--GMQTK-----NHKVIRPFLSITKQELITYAQDNHL 167 Query: 187 SWCEDPSNTD 196 W +D +N D Sbjct: 168 GWRQDKTNFD 177 >gi|262066540|ref|ZP_06026152.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC 33693] gi|291379774|gb|EFE87292.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC 33693] Length = 452 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + F K K + ++H LR E A + + D + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QDFFKFKIYLVHINHLLRGEDADADENFSYDYARKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K +TG L RE RY SE + A I TAH DDQLET Sbjct: 80 SLEIFAKRIPVKEIAKETGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQLETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ L + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIR-----GTSLQGLEGIKLKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|85859371|ref|YP_461573.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB] gi|85722462|gb|ABC77405.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB] Length = 476 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 18/193 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSD- 75 H++ AVSGG DS+ LL H ++S ++ S ++H LR + D VR +S Sbjct: 20 HVIAAVSGGPDSVALL---HVLISLACEYELTLSVAHLNHGLRGSESDAEEQLVRQLSKE 76 Query: 76 ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 CS RI + K + + L R+ RY + A I A+ I H +DQ Sbjct: 77 RGISCSVKRIDLQALR-KCDRRKCSLEDIGRQERYEFFTALAAEIGASRIALGHHREDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M R G GL G+ +I RP L R DI FL ++ + ED Sbjct: 136 ETVLMNFIR-----GSGLEGLKGIRPVRDGCFI-RPLLEVSRRDILDFLQAEHLPFLEDS 189 Query: 193 SNTDDRFERVRVR 205 SN++D F R R+R Sbjct: 190 SNSEDHFLRNRIR 202 >gi|330686057|gb|EGG97679.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU121] Length = 433 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 21/217 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++AVS G DSM LL H +L++ K + I V+H LR+ + +E + C Sbjct: 14 HIVLAVSTGIDSMCLL---HLLLNEYQHTYSKLTCIHVNHGLRQASIEEEAFFKTYCEEH 70 Query: 81 RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I + + S+ + +R+ RY K + A +++TAH DDQ+ET++ Sbjct: 71 QIEYFIKRLDLSETVEAGNSIQNVSRQYRYDWFDSIMKQLGANVLLTAHHQDDQIETIFY 130 Query: 138 R--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + R + +G++ Y L RP L + I+S+ Q NI + ED SN Sbjct: 131 RLFTGR-FTRSHLGIAYTSQRSSYQL----IRPMLDISKAAIKSYQNQYNIPFFEDVSNH 185 Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225 + + R +R + + +D+ A LK+K + D Sbjct: 186 KNVYVRNDIRNRIIPAVMDNQQLDV-AHLLKLKSWHD 221 >gi|262380273|ref|ZP_06073428.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] gi|262298467|gb|EEY86381.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] Length = 454 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 17/185 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + ++ G+I+ AI VDH L+ ++D +V C +L + Sbjct: 34 LIGCSGGMDSMLLLYFMAALCP----GRIR--AIYVDHQLQAQSRDWGIHVQAECMKLDV 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L AREARY +H K+ +++ AH DQ ETV +R Sbjct: 88 PCIVQPVHVNA--GNLERQAREARYQAYHQHIKS--GEVLVLAHHQQDQAETVLLR---- 139 Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+SG+ D + I RP L RE I + Q NIS+ +DPSN + ++ Sbjct: 140 -LFSGTGISGLSAMKQLDQRHEMPIWRPMLSLSREQICQWAEQLNISFIDDPSNNNTHYD 198 Query: 201 RVRVR 205 R R Sbjct: 199 RAWCR 203 >gi|54020383|ref|YP_115689.1| hypothetical protein mhp176 [Mycoplasma hyopneumoniae 232] gi|61216451|sp|Q601M6|TILS_MYCH2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53987556|gb|AAV27757.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 297 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 L+ VSGGSDSM LL K K + V H LR A E VS C + Sbjct: 12 LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++S+ + K + L + R RY + K N T ++ H DD LETV+++ Sbjct: 60 YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ G+ + N+ I RPFL R +++ IR Q+ I + +D SN Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKKIPYLDDQSNFTG 174 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 175 KYQRNQIR 182 >gi|333031348|ref|ZP_08459409.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011] gi|332741945|gb|EGJ72427.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011] Length = 431 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 25/192 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVC 77 I+V +SGG+DS+ LLI L + +S I+ HC LR E A + +V +C Sbjct: 22 IIVGLSGGADSVALLILLKD---------LGYSCIAA-HCNFHLRGEEADRDEDFVVQLC 71 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L I + K + + AARE RY K NAT + AH DD +E Sbjct: 72 KKLDIKLRSTHFDTYKYAADHKLSIEMAARELRYNWFERLCKEENATKVAIAHHRDDNVE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G GL G+ T + N I RP L R++I FL R + D + Sbjct: 132 TLLLNLIR-----GAGLKGL--TGIQPKNGNIVRPLLTISRKEIVFFLQSRQQDFVTDST 184 Query: 194 NTDDRFERVRVR 205 N +D F R +VR Sbjct: 185 NLEDEFARNKVR 196 >gi|167624879|ref|YP_001675173.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4] gi|167354901|gb|ABZ77514.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4] Length = 476 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 94 PQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 P+ + A AR RY AL+SE + N ++MTAH DDQLETV + +R KG LS Sbjct: 113 PRLSVEAQARSVRYEALLSELS---NNDILMTAHHQDDQLETVLLALKRGLGPKG--LSA 167 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 M ++ WI RP L C +++I ++ + I+ +D SN DD+++R +R Sbjct: 168 MGKVQRFNQQHWIIRPLLDCSKDEIEAYAKRYEITHIQDESNFDDKYDRNFLR 220 >gi|260596609|ref|YP_003209180.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032] gi|260215786|emb|CBA28217.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032] Length = 444 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LVA SGG DS + LH ++ R + +++ AI V H + A + +C R Sbjct: 24 QLLVAYSGGLDST---VLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQAICHR 80 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + + ++ GL A AR+ARY A + ++TA DDQ ET+ + Sbjct: 81 WQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLDDQCETLLLAL 138 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G L+ M + + + I RP L R + ++ + + W +D SN DDRF Sbjct: 139 KRGSGPAG--LAAMPAELPFAGSA-ILRPLLNTSRAQLEAWADRHQLLWIDDESNQDDRF 195 Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223 + R F+R L AL + F Sbjct: 196 D----RNFLRLRILPALQARWPHF 215 >gi|262404577|ref|ZP_06081132.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586] gi|262349609|gb|EEY98747.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586] Length = 440 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 22/251 (8%) Query: 12 FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65 FV+ L YP LV A+SGG DS LL L + G+ +F A+ V H L Sbjct: 8 FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A V+ C I+ + + + + AREARY +S++ + TL++ Sbjct: 61 ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQYVDS--DTLLLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYTPFAQGH-LARPLLTVSRQDIEAYAMQK 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +SW D SN D R+ER +R + I L +L +++ ++ +L+ + L Sbjct: 176 KLSWVTDESNFDTRYERNFLRHHITPI-LTERWLSIRQAVQRSAELCAEQEVLLQELLAD 234 Query: 245 HMRSIIAISQD 255 ++ AI+QD Sbjct: 235 ALKR--AITQD 243 >gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6] gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6] Length = 487 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 22/220 (10%) Query: 6 IESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I VR F+++ L P ++VAVSGG DS+ LL H ++ ++ G +DH Sbjct: 6 INRVRAFLQAQQLFTPNRRVVVAVSGGPDSLCLL---HVLVQLQAQGGPLLHVAHLDHGF 62 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117 R + E V+ +C+ + S+ + + G MAAAR+ARYA +++ + Sbjct: 63 RGPQSAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKMAAARQARYAFLTDLVQQQ 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWIS--------RP 168 A + AHT DDQ ETV + + R GL GM + + ++ + S RP Sbjct: 123 QAHALAVAHTADDQAETVLLHALRGAGPA--GLRGMRERVAAHEWQIEASVVHAADLVRP 180 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L R +I ++ + +DPSN + R RVR + Sbjct: 181 LLSTTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQI 220 >gi|258621013|ref|ZP_05716047.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573] gi|258586401|gb|EEW11116.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573] Length = 440 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%) Query: 12 FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65 FV+ L YP LV A+SGG DS LL L + G+ +F A+ V H L Sbjct: 8 FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + C I+ + + + + AREARY +S+H + TL++ Sbjct: 61 ADQWAQDCQTWCQAANISCQIEHVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQGH-LARPLLTVSRQDIEAYAMQK 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +SW D SN D R+ER +R + Sbjct: 176 KLSWVTDESNFDIRYERNFLRHHI 199 >gi|332830557|gb|EGK03178.1| hypothetical protein HMPREF9455_00748 [Dysgonomonas gadei ATCC BAA-286] Length = 438 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V VSGG+DS+ LL LH SFG A H E + + +V ++C + Sbjct: 22 IIVGVSGGADSIALLDILH------SFGLECVVAHCNFHLRGEESNRDAFFVEELCKKYN 75 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + + + AARE RY + A I AH DD +ET+ + Sbjct: 76 LKYERIDFDTEAYAAINSVSIEMAARELRYNWFEQLRVIHMADKIAVAHHRDDSVETILL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G+ G+ T + +N ++ RP L R++I +L +R +S+ +D +N +D Sbjct: 136 NLVR-----GTGIRGL--TGIAPVNGYVIRPLLCVSRDEIIEYLKERRMSFVDDSTNNED 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 MYARNKIR 196 >gi|89068037|ref|ZP_01155454.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516] gi|89046276|gb|EAR52333.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516] Length = 377 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 9/168 (5%) Query: 46 RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA 105 R FG I+ + ++VDH LR A DE V+ L + H V+ W + Q L AAR A Sbjct: 12 RVFG-IRLAVVTVDHGLRPEAADEAALVAAEAELLGLPHDVLRW-HWDGQGNLQDAARRA 69 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW- 164 R LI + I + AHT DDQ ET+ +R +R +G LSGM + D+ W Sbjct: 70 RARLIGDWRGEI--AHVAFAHTRDDQAETLLLRLRRGSGVEG--LSGMAER--RDMGGWQ 123 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 I RP L R+++R + I + +DPSN D ++RVR+RR + D++ Sbjct: 124 IVRPLLDAGRDELRHYCRVLRIPYADDPSNADPTYDRVRIRRLLSDLE 171 >gi|329666677|gb|AEB92625.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026] Length = 431 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A SGG DS+ LL L + L + S I +DHCLR+ + E + + + S L+ Sbjct: 20 FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W PQ G+ A ARE RYA +++ + ++TAH DD +E + ++ Sbjct: 77 VKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGREYQTDYLLTAHHGDDLIENILLKFI 136 Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R D AE + + G + + + RP ++ ++++ + ++ + ED +N +D Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFED 190 Query: 198 RFERVRVRRFV 208 R R+R V Sbjct: 191 DTLRNRLRHHV 201 >gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus italicus DSM 15952] gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus italicus DSM 15952] Length = 457 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 9/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVS G DSM LL L S ++D + + + V+H LR ++ E +++ C + Sbjct: 20 VLLAVSTGVDSMVLLDLLISSVTDIQ----RIAVVHVNHGLRPESEKEACFINAYCKEHQ 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +W + + + A AR+ RY + +++TAH DDQLET+ M++ R Sbjct: 76 LDFFQANW--TPTSSNIEANARQFRYDFFKKIMNEQGYKVLLTAHHRDDQLETMLMKAIR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 D + L G+ + + N + RP L ++ + + +R +++ ED +N D + R Sbjct: 134 D--GQLTALKGIVASQPF-ANGQLVRPLLPYDKQTLYDYAKRRELTYFEDETNQDSLYFR 190 Query: 202 VRVRRFV 208 R+R+ V Sbjct: 191 NRMRQQV 197 >gi|289663217|ref|ZP_06484798.1| cell cycle protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 469 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 37/339 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS + LH + + + + A+ V H L A + C L+ Sbjct: 52 VLLAYSGGMDSN---VLLHLLAATPRYRQAGLRALHVHHGLHTDADAWAAHCQRSCDALQ 108 Query: 82 IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + GL AAAR AR+ + HA L + AH DDQ ET +R+ Sbjct: 109 VPLQIVQVHVERDSGLGLEAAARNARHTAFA-HALAAGEWLAL-AHHRDDQAETFLLRAL 166 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R A GL+ M + LW RP L R D+ ++ L + + W EDPSN D R Sbjct: 167 R--ASGPEGLAAMRPQRPFANGTLW--RPLLAHARADLLAYALAQGLRWIEDPSNADPRH 222 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 + R F+R L L + + D + A L + ++ +A+ + Sbjct: 223 D----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLPSVRTA 274 Query: 260 DSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 L + LR +A + G ++ER + + ++ C + + Sbjct: 275 SGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQ 334 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 + I R L++ R P + + WDG Q Sbjct: 335 MEIRRWRQCLFLHR-----PAAVWPSDWQASWDGAVPLQ 368 >gi|42518368|ref|NP_964298.1| hypothetical protein LJ0281 [Lactobacillus johnsonii NCC 533] gi|61216579|sp|Q74LA3|TILS_LACJO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41582653|gb|AAS08264.1| hypothetical protein LJ_0281 [Lactobacillus johnsonii NCC 533] Length = 431 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A SGG DS+ LL L + L + S I +DHCLR+ + E + + + S L+ Sbjct: 20 FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W PQ G+ A ARE RYA +++ + ++TAH DD +E + ++ Sbjct: 77 VKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGRKYQTDYLLTAHHGDDLIENILLKFI 136 Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R D AE + + G + + + RP ++ ++++ + ++ + ED +N +D Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFED 190 Query: 198 RFERVRVRRFV 208 R R+R V Sbjct: 191 DTLRNRLRHHV 201 >gi|91775602|ref|YP_545358.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus flagellatus KT] gi|91709589|gb|ABE49517.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus flagellatus KT] Length = 425 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS LL L + A+ V H L A + + C L Sbjct: 1 MLIAFSGGLDSRVLLQLLAQCSQQHG---VLLEAMHVHHGLSPNADRWAAFCAAECQGLG 57 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 IA H ++ G+ A AR ARY + H +A ++ AH DDQ ET+ ++ Sbjct: 58 IAFHCQRICVDTSSGLGIEAGARLARYTALLSH----DADYVLLAHHQDDQAETLLLQLL 113 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G G G+ ++D + + RP + R++I+++ + W +D SN D R++ Sbjct: 114 R-----GAGAKGLAAMAIHDPSRRLLRPLIDVSRDEIQAYAKHAGLQWVDDESNLDTRYD 168 Query: 201 RVRVRRFV 208 R +R V Sbjct: 169 RNFLRHMV 176 >gi|304396663|ref|ZP_07378544.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB] gi|304356172|gb|EFM20538.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB] Length = 439 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 19/278 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VA SGG DS LL L ++ A+ V H L A + VC + Sbjct: 14 AALVVAFSGGLDSTVLLHQLRGWQQQHPESHLR--ALHVHHGLSPNADCWAAHCLSVCEQ 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V+ + G+ AAAR ARY +S A + +++TA DDQ ET + Sbjct: 72 WQLPCEVLHVTVDGRENGIEAAARTARYQALS--AALLPGEVLLTAQHLDDQCETFMLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ + L RP L R+ + ++ + W ED SN D R+ Sbjct: 130 KRGSGPAGLAAMPAARALGSHQLL---RPLLNQSRQSLETYARTHQLVWIEDESNQDLRY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 + R F+R L ALY + F + + + + L+ + LT + +I Sbjct: 187 D----RNFLRQRLLPALYQRWPHFAEATARSAALCSEQEQLLDELLTGQLNELIQ-PDGS 241 Query: 257 LNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV 290 L+ ++ LR +A I G +P +++R+ Sbjct: 242 LHFPPLMVMSELRANALLRRWIAGQGGRMPSREALKRI 279 >gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931] gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931] Length = 398 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 11/190 (5%) Query: 22 ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVA SGG DS+ L IA H + RS ++ A+ VDH L+ + + ++ + L Sbjct: 57 VLVACSGGPDSLALACIAAH--FARRS--DVRVGAVVVDHGLQADSAEVAASTAETLTNL 112 Query: 81 RIAHSVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + V + PQ G AAR ARY+ A ++ HT DDQ ETV + Sbjct: 113 GL-YPVRTECVQVPQGSMGPEMAARTARYSAFECAVHNTGARAVLLGHTLDDQAETVLLG 171 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+GM + + ++ RPFL RR D+ + + DP+NTD Sbjct: 172 LGRGSGTRS--LAGMPPARIENGVTYL-RPFLALRRADMLNICEAEGATPWNDPTNTDQT 228 Query: 199 FERVRVRRFV 208 R R+R + Sbjct: 229 LMRARIRHTI 238 >gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16] gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16] Length = 434 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++A SGG DS LL L + + A+ V H L A + + ++ Sbjct: 21 IVLAFSGGIDSRVLLSLLARYQQETHRPTL---AVHVHHGLSVNADEWANQCQEWAAQSD 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + AR+ RY ++++H + +++T DDQLET + +R Sbjct: 78 VPFILEKVQLDASGKSIEECARDQRYKVLAQHVNEKD--ILLTGQHGDDQLETFLLALKR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG LS M ++ + N + RP L+ RRE+I + ++W ED SN D RF+R Sbjct: 136 GSGPKG--LSAMAESKPFS-NGRLVRPLLKVRREEIEQYAQHHGLNWVEDESNQDTRFDR 192 Query: 202 VRVRRFV 208 +RR + Sbjct: 193 NYIRRHI 199 >gi|120436499|ref|YP_862185.1| PP-loop family protein [Gramella forsetii KT0803] gi|117578649|emb|CAL67118.1| PP-loop family protein [Gramella forsetii KT0803] Length = 437 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 19/192 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 + +L+AVSGG DS ++ H LS K+ F+ + LR + + D+ ++V D+ Sbjct: 19 SKLLLAVSGGVDS---VVLAHLCLS----AKLDFTIAHCNFNLRGDESDDDEKFVVDLAD 71 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + S+ K + + AARE RY +E + ++ +TAH +D LET Sbjct: 72 FLEVEVYTESFNTLKFAENNKISVQMAARELRYEWFAELSNSVQFDYTLTAHHANDNLET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G G G+ T + I RP L R +I F ++N+ W ED SN Sbjct: 132 FLINLIR-----GTGPEGL--TGIKKEKNEIVRPLLPFTRSEIEDFARKKNLKWREDSSN 184 Query: 195 TDDRFERVRVRR 206 D++ R ++R Sbjct: 185 ASDKYMRNKIRH 196 >gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS 6054] gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 484 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 11/189 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ +LVA+SGG DS+ L L I +AI++DH R + +E + V + Sbjct: 23 PSRVLVALSGGVDSICLTYLLSQYSRLYCNNAIAINAITIDHGYRSGSNEEAKAVGKLVE 82 Query: 79 RLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + H V + K T AR RY E +A+ + AH +DQLET Sbjct: 83 KWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLNDQLETF 142 Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDL-------NLWISRPFLRCRREDIRSFLLQRNIS 187 R Q + + G+ GL + + + RP L + +I Q+NIS Sbjct: 143 IQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKERISVIRPLLSFEKSEIIDTCKQQNIS 202 Query: 188 WCEDPSNTD 196 W ED +N D Sbjct: 203 WFEDSTNMD 211 >gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 488 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 23/210 (10%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++VR F + L H+ +AVSGG+DSM LL + + ++ I + V+H L Sbjct: 7 LQTVRGFCAREKLLDGKQHLALAVSGGADSMALLCLIRPLAGEKG---IALTVCHVNHGL 63 Query: 63 R-ETAKDEVRYVSDVCSR----LRIAHSV-VSWKNSKPQTGLMAAAREARYALISE-HAK 115 R ETA + +V +VC+R LR+ H+ + + KP+ G AR RYA A+ Sbjct: 64 RGETADRDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG-EDWARRLRYACFERVLAE 122 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I+A + TAHT DQ ET+ R R G GL G + RP L R Sbjct: 123 GIDA--VATAHTGSDQAETLLFRLAR-----GTGLHGAAG--IRPSRPGYLRPLLCLTRA 173 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D + W D +N D + R R+R Sbjct: 174 DTEAVCRACGEGWVTDETNDADDYARNRLR 203 >gi|144575318|gb|AAZ53579.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 297 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 L+ VSGGSDSM LL K K + V H LR A E VS C + Sbjct: 12 LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++S+ + K + L + R RY + K N T ++ H DD LETV+++ Sbjct: 60 YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ G+ + N+ I RPFL R +++ IR Q+ I + +D SN Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKRIPYLDDQSNFTG 174 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 175 KYQRNQIR 182 >gi|332883365|gb|EGK03648.1| hypothetical protein HMPREF9456_01715 [Dysgonomonas mossii DSM 22836] Length = 441 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 27/195 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSD 75 + ++V VSGG+DS+ LL LHS +K+ + V HC LR E + + +V + Sbjct: 20 SKVIVGVSGGADSVALLDILHS---------LKYKCV-VAHCNFHLRGEESNRDAFFVEE 69 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDD 130 +C + + + V + + AARE RY E +TI+ A I AH DD Sbjct: 70 LCQKYNLKYERVDFDTEAYAEIHSISIEMAARELRYNWF-EQIRTIHLADKIAVAHHRDD 128 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + R G G+ G+ + N I RP L R+DI +L R + + + Sbjct: 129 SVETILLNLIR-----GTGIRGLTGIAAQNNN--IIRPLLCLSRKDILEYLKDRGLKYVD 181 Query: 191 DPSNTDDRFERVRVR 205 D +N +D + R ++R Sbjct: 182 DSTNNEDLYTRNKIR 196 >gi|293610423|ref|ZP_06692724.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827655|gb|EFF86019.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + K I +DH L+ + + V+ +RL I Sbjct: 34 LIGCSGGMDSMLLLHLMSQIFPH------KIRIIYIDHQLQSKSAEWGELVAKQATRLNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++ K L A AR+ARY +H + N L++ AH DQ ETV +R Sbjct: 88 PYTIQ--KVQVTDGNLEAQARQARYYAYLQHLQA-NEILVL-AHHQQDQAETVILR---- 139 Query: 143 YAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G G+ G+ C D+ +W RPFL RE I + Q I + +DP+N D Sbjct: 140 -LLSGAGVDGLAAMQCIDHRVDMTIW--RPFLDLTREQIAEWTTQLEIEYVDDPTNYDIH 196 Query: 199 FERVRVRR 206 ++R R Sbjct: 197 YDRAWSRE 204 >gi|71893557|ref|YP_279003.1| hypothetical protein MHJ_0201 [Mycoplasma hyopneumoniae J] Length = 286 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 20/187 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 ++ VSGGSDSM LL K K + V H LR A E VS C + Sbjct: 1 MIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 48 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++S+ + K + L + R RY + K N T ++ H DD LETV+++ Sbjct: 49 YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 108 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDR 198 ++ G+ + N+ I RPFL R ++ I Q+ I + +D SN + Sbjct: 109 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGK 164 Query: 199 FERVRVR 205 ++R ++R Sbjct: 165 YQRNQIR 171 >gi|330968943|gb|EGH69009.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 307 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLYLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCRTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + +++T DDQ ET+ R R Sbjct: 88 FESVRLQ-VEPGPSLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGR-LVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|166711443|ref|ZP_02242650.1| cell cycle protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 434 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 88/343 (25%), Positives = 136/343 (39%), Gaps = 39/343 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 14 PGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRSCD 70 Query: 79 RLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLETVY 136 L++ +V + + GL AAAR AR+ A T+ A +T AH DDQ ET Sbjct: 71 ALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAETFL 127 Query: 137 MRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R A GL+ M + LW RP L R D+ ++ L + + W EDPSN Sbjct: 128 LRALR--ASGPEGLAAMRPQRPFANGTLW--RPLLAHSRADLLAYALAQKLRWIEDPSNA 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D + R F+R L L + + D + A L + ++ +A+ Sbjct: 184 DPHHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLPS 235 Query: 256 ILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 + L + LR +A + G ++ER + + ++ C Sbjct: 236 VRTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACF 295 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 + +V + R L++ R PT + WDG Q Sbjct: 296 AWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333 >gi|91201108|emb|CAJ74167.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 482 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 6/189 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DS+ LL LH + + ++ +++ ++H LR + ++++ ++V D+ ++L Sbjct: 26 VIVGVSGGPDSVALLKTLHFLNAAKNL-RLRLYVAHLNHQLRGDFSEEDEQFVQDLANKL 84 Query: 81 R---IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I+ V K S+ + L AR+ RY SE ++ N + + T H DD ET+ Sbjct: 85 SLPFISKRVNIGKIASETKLSLEEMARKERYTFYSEASQNYNVSHVATGHNADDNAETIL 144 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G+G + + I RP L +++I +L + + D SN + Sbjct: 145 HRIIRGTGAPGLGGIPIKRLLSPGTPQLIIRPLLFAWKKEILEYLNKDKTKYRVDASNYE 204 Query: 197 DRFERVRVR 205 + R R+R Sbjct: 205 KEYTRNRIR 213 >gi|28374025|pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli Length = 433 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 8 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 64 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 65 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R GLS + + I RP L R ++ + Q ++ W ED Sbjct: 123 ETFLLALKRGSGP--AGLSAXAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 179 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 180 SNQDDSYDR 188 >gi|123969392|ref|YP_001010250.1| ATPase [Prochlorococcus marinus str. AS9601] gi|123199502|gb|ABM71143.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. AS9601] Length = 336 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76 ++IL++VSGG DSM LL ++ + K+ +ISV DH E + + D Sbjct: 33 SNILISVSGGQDSMALLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKDY 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129 C I+ S + +K ARE RY + E AKT+ +T ++T HT Sbjct: 87 CEDKNISFSFD--QANKEDISSEEKAREWRYKKLCERAKTLLSTNQEKHNIYLLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET + R GLS + L + +++ RP L RED + F + I Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLIENQIYLIRPILIFSREDTKQFCNEMKIPVW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N+D + +R VR+ + Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221 >gi|302672259|ref|YP_003832219.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus B316] gi|302396732|gb|ADL35637.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus B316] Length = 475 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 35/223 (15%) Query: 12 FVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F+R +++ P +L SGG+DS L++ L S+ IK A+ V+H +RE A + Sbjct: 11 FIRANNMIDPGSTVLAGFSGGADSTALMLTLCSL---SKVLNIKLVAVHVNHGIREEAIE 67 Query: 69 EVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 + +V + C I V WK ++ + G R ARY +E AK Sbjct: 68 DETFVKNFCEEHDIECVVYKKDIPKLSKKWKMTEEEAG-----RRARYEAFTETAKKHGT 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++I AH +D ET+ M R G GL G + + I RPFL R +I Sbjct: 123 SIIAVAHHQNDVAETLLMNLIR-----GSGLHGA--GAIRPVRGNIIRPFLCVDRAEIEK 175 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 +L + +C D +N E + R +R+I L KM+K Sbjct: 176 YLKGKRQLFCHDKTND----ENIHTRNIIRNI----LIPKMEK 210 >gi|260905550|ref|ZP_05913872.1| tRNA(Ile)-lysidine synthetase [Brevibacterium linens BL2] Length = 292 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 12/225 (5%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108 G+++ A++VDH L+ T+ + R V + + V S GL AAAREARY Sbjct: 14 GELRARAVTVDHGLQPTSAEVARRVISIAESWGVPAEVSSVNVEAGVDGLEAAAREARYD 73 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A ++TAHT DQ ETV + R G G + L + RP Sbjct: 74 ALEAARSADGADWVLTAHTRSDQAETVLLGLMR-----GSGTRSLAGMALRTGR--VVRP 126 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQD 225 L R + +NI DP N DD F RVR R + ++ + + + + Sbjct: 127 LLDVDRASTLASCRAQNIEVWHDPMNVDDSFARVRARSLLESLEADLGQPITANLARTAE 186 Query: 226 L-RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 L R + + P V R+ + +S+ + +++ L +LR Sbjct: 187 LCRADADCLDELAEPSAAAVRGRTEVPLSE-VADLEDALASRVLR 230 >gi|124006425|ref|ZP_01691259.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla marina ATCC 23134] gi|123988082|gb|EAY27753.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla marina ATCC 23134] Length = 450 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 25/197 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC---LRETAKDE-VRYVSD 75 +IL+AVSGG DS+ VL+D F +IK +++ HC LR A +E +V Sbjct: 20 NILLAVSGGIDSV--------VLTDL-FAQIKSHGQVAIAHCNFQLRGVASEEDEEFVKQ 70 Query: 76 VCSRLRIAHSVV---SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I V ++ ++ Q G + AR RYA + + TAH +D Sbjct: 71 LAQHYGIPCFVTRFDTYTLAQAQKGSIQMIARNLRYAWFEQLRTKEGYHYLATAHHQNDM 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ETV + R G G++G+ + + I RP L RE+I ++ ++ + WCED Sbjct: 131 VETVLLNLVR-----GTGIAGLHGIKVKQGH--IIRPMLFASREEIEAYAQEKGLKWCED 183 Query: 192 PSNTDDRFERVRVRRFV 208 SN D+++ R R+R V Sbjct: 184 ASNQDNKYYRNRLRNEV 200 >gi|121611837|ref|YP_999644.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2] gi|121556477|gb|ABM60626.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2] Length = 308 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 20/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS LL+A + R G+++ A+ V H L+ A ++ + +C RL+ Sbjct: 10 LAVGLSGGADSSALLLAC----ARRWPGQVQ--ALHVHHGLQAAADGFEQHCAALCQRLQ 63 Query: 82 IAHSVVSWKNS-KPQTGLMAAAREARYALISEHA---KTINA--TLIMTAHTFDDQLETV 135 + V + S P AAR+ARY ++ A +T +A ++++ H DDQ ETV Sbjct: 64 VPLMVQHLRASPAPGQSPEDAARQARYQALAALAQANQTHDAIKSIVIGQHA-DDQAETV 122 Query: 136 YMRSQRDYAEKGMGLSGMCD-TILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R G G++G+ +++ L RP L+ D+R +L + +W EDPS Sbjct: 123 LLALLR-----GAGVAGLAAMPARWEMAGLTWHRPLLQVTAADVRQWLRAQGQTWVEDPS 177 Query: 194 NTDDRFERVRVR 205 N D R R R+R Sbjct: 178 NADQRLTRNRIR 189 >gi|120599536|ref|YP_964110.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1] gi|120559629|gb|ABM25556.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1] Length = 465 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 30/344 (8%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQHGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ + +++ K P+ + A AR RY I +H + + L++T Sbjct: 68 DAWAQHCITRGQHYGLP-TIIEHVQVKLGPRMSIEAEARRMRYQAIEQHVGSDD--LLLT 124 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQLET+ + +R KG+ G ++ + + RP L RE I ++ Sbjct: 125 AHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEAYASAN 181 Query: 185 NISWCEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKF--QDLRVKVNNAVAML 237 + ED SN DD+++R +R R A F + + ++ V++ Sbjct: 182 GLVHIEDESNQDDKYDRNFLRLDIIPRLKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241 Query: 238 IPKYLTVHMRSIIAISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV--- 290 +P +LT Q + N++ T + L + I ++LP + + ++ Sbjct: 242 LPTWLT----QAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGVALPSFVQLNQIIHQ 297 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 +L K + + +G + R AN L++ +++ + Y ++ Sbjct: 298 LLNAKDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341 >gi|160878299|ref|YP_001557267.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg] gi|160426965|gb|ABX40528.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg] Length = 492 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 ++V VSGG+DS+ LL LH + R + A+ V+H LR DE +V +C+ L Sbjct: 21 VIVGVSGGADSICLLTCLHRL---REQYHLNLYAVHVNHMLRGMEADEDEAFVQSMCNSL 77 Query: 81 RIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I H V V T + A R RY + + + A I AH +D ETV Sbjct: 78 SIPLHCVREDVKRIAELSGTTIEEAGRNLRYLSFEQECERVKAHKIAVAHNRNDNAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +G GL+GM T + I RP L RE+I +FL +I + D +N Sbjct: 138 F-----HLFRGTGLTGM--TGIPKKRGQIIRPLLCVTREEIETFLFNEHIFYRIDSTNLS 190 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 191 NDYTRNKIR 199 >gi|251790727|ref|YP_003005448.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591] gi|247539348|gb|ACT07969.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591] Length = 442 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 8/194 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H LVA SGG DS + LH + R + A+ V H L A + Sbjct: 18 QLATGGHYLVAYSGGLDST---VLLHLMTRLRLPRALSLRAVYVHHGLSVNADAWAEHCR 74 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + VV + G+ AAAR ARY ++ +H +++TA DDQ ET Sbjct: 75 TQCLNWLVPFDVVPVQVDARDGGIEAAARAARYKVLHQH--VCEGEVLLTAQHQDDQSET 132 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G+ T+ + + RP L RE + + +SW ED SN Sbjct: 133 FLLALKRGSGPAGLASMAAAATLN---GMVLQRPLLSISREQLEIYARLHQLSWVEDDSN 189 Query: 195 TDDRFERVRVRRFV 208 D+R++R +RR V Sbjct: 190 ADERYDRNFLRRQV 203 >gi|299146811|ref|ZP_07039879.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23] gi|298517302|gb|EFI41183.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23] Length = 426 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA+SGG+DS+ LL LH+ F +E+ +DE+ +V +C R+ Sbjct: 22 ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + K A ++ AH DD +ET+ + Sbjct: 76 IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R++I +L + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINRKEIIRYLQNIGQDYVTDSTNLED 188 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254 + R ++R L+ L L Q++ V N + + + T++ + I + Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237 Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308 I+ + + L++ A AI + G+ S + L + GK+ C RV+ Sbjct: 238 KIITAEGIRISDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297 Query: 309 IDRRANFLWITRAVRNLPTL 328 DR FL I A TL Sbjct: 298 KDRE--FLLIETAESENETL 315 >gi|330723804|gb|AEC46174.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis MCLD] Length = 252 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 15/186 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL + L +++ A V++ LR + + + V C + +I Sbjct: 11 LLAVSGGPDSMFLL----NKLKNKNI-----VAAHVNYHLRADSNVDQQIVEKFCQKHKI 61 Query: 83 AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S K + + AR RY S+ K N ++ AH DD +ETV+++ + Sbjct: 62 KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ LY++N I+R FL + +E+I + L ++NI + D SN+ D ++ Sbjct: 122 KKEVNYWGIKK--KNFLYNMN--ITRIFLFKYFKEEIINLLNKKNIHFAIDSSNSKDIYQ 177 Query: 201 RVRVRR 206 R ++R Sbjct: 178 RNKIRH 183 >gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 740 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 39/228 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RL 80 I VAVSGG+DSM L++ L L K A++VDH LR + E V+ +C+ R Sbjct: 14 IAVAVSGGADSMALMLLLREYLHGNRI-KTPLLAVTVDHQLRIGSSREALEVAKICAERG 72 Query: 81 RIAH--SVVSW--------KNSKPQTGLM-----------AAAREARYALISEHAKTINA 119 I H V W + Q+ L+ AR+ RY L+ Sbjct: 73 GITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRRVCLEYGV 132 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILY------DLNL 163 + AH DQLET R R G+ L G+ D + D + Sbjct: 133 RCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKGLDSDYSA 192 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + RP L ++++ + + +W DPSN D ++RVR+R+ ++ + Sbjct: 193 TLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRV 240 >gi|23466228|ref|NP_696831.1| hypothetical protein BL1680 [Bifidobacterium longum NCC2705] gi|61216664|sp|Q8G3S4|TILS_BIFLO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23326973|gb|AAN25467.1| narrowly conserved hypothetical protein similar to MesJ [Bifidobacterium longum NCC2705] Length = 388 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V +N+ Q GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 L--GPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + +RP L R + + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215 >gi|226226797|ref|YP_002760903.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27] gi|259533720|sp|C1A873|TILS_GEMAT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226089988|dbj|BAH38433.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27] Length = 468 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 17/184 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDSM LL A+ DR F DH A D V+ RL Sbjct: 31 LVLAVSGGSDSMALLFAMERWAPDRIAAVATF-----DHGTGSYATDAASLVAAHGRRLG 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V+ + +P AA R+AR++ + A+ +A + TAHT DDQ ETV MR R Sbjct: 86 L--TVIRERARRPGVN-EAAWRDARWSFLQRVARGFHAR-VATAHTRDDQAETVVMRLLR 141 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ ++ RP+L RE++ +L + + EDP N F R Sbjct: 142 GSGARGLAALAAPSPVV--------RPWLGVSREELTRWLASEGLPFLEDPMNASRYFLR 193 Query: 202 VRVR 205 RVR Sbjct: 194 ARVR 197 >gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J2-071] gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J2-071] Length = 648 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSDLVSKEAISVAHLNHHLRENAANEQNVVETFCERHG 80 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + Q G+ AR RY + N + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I ++ + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKREVRGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|304385528|ref|ZP_07367872.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM 20284] gi|304328032|gb|EFL95254.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM 20284] Length = 457 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 13/190 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VAVS G DS L+ AL L+ + + + V+H LR + E ++ C++ Sbjct: 20 APVVVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEEFLRQWCAK 76 Query: 80 LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ W + P TG+ AAAR RY ++ + +A ++TAH +Q E+ M+ Sbjct: 77 RRLTFVSTKWSRELHPDTGVEAAARRFRYDFFAKVMQRYHANTLLTAHNATEQAESFLMQ 136 Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS G + + + RPFL+ + + + + +++W ED +N Sbjct: 137 VVR-----GGWLSQLRGTPEERSFATGRLV-RPFLKISKPTLVALAQENHLTWFEDETNQ 190 Query: 196 DDRFERVRVR 205 D + R RVR Sbjct: 191 QDDYLRNRVR 200 >gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi] gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi] Length = 598 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%) Query: 24 VAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VAVSGG DSMG I + L + ++ A+ VDH +RE ++ E+ YV +V ++ Sbjct: 124 VAVSGGGDSMGTAILVKKWADYLKQKKGIDMEVVALIVDHQIREESEHEMLYVHEVLTKT 183 Query: 81 RIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +V ++ P Q AR R ++S + L+++ H D +ET+ R Sbjct: 184 VGYKNVFCFQCLWPDNQKKQQRIARLKRQLIMSSECVSQKIDLLISGHHKQDNIETMIHR 243 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G+ G+ + + D + ++RP L ++++ Q NI W EDP N+D+ Sbjct: 244 VAFSSGINGLNGIPLIYSYCVADATIMLARPGLVFDCNELKAVCTQYNIKWVEDPKNSDE 303 Query: 198 RFERVRVR 205 R R +R Sbjct: 304 REFRSIIR 311 >gi|223041688|ref|ZP_03611884.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202] gi|198246543|gb|ACH82232.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202] Length = 423 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P LVA+SGG DS+ +L K+ A+ V H L A V + C Sbjct: 22 PPSFLVALSGGVDSV-------VLLHLLHRLKLPLRAVHVHHGLSPNADQWVAFCQHYCQ 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V + + G+ A ARE RY I E + + +++TAH DDQ ET + Sbjct: 75 QQAIP-LCVKYVQVNGKKGIEAEAREKRYQTIRETRE--HNEVVVTAHHLDDQAETFLLA 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG LS M + + I RP L + DI ++ +N+SW ED SN Sbjct: 132 LKRGSGVKG--LSAM-QAVNFSQKFPIFRPLLAVSKNDILAYAQSQNLSWIEDESNQSTD 188 Query: 199 FERVRVRRFV 208 ++R +R V Sbjct: 189 YDRNFLRHKV 198 >gi|332290166|ref|YP_004421018.1| hypothetical protein UMN179_02108 [Gallibacterium anatis UMN179] gi|330433062|gb|AEC18121.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 431 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ +SGG DS +L+ L L++R +KF AI + H + A + + +C + + Sbjct: 25 LIGLSGGVDST-VLLHLFVRLAERM--PLKFRAIHIHHGISPNADHWLNHCRQLCQQFNV 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 S + + Q + A AR+ RY I +H + +++TAH DDQ ET + +R Sbjct: 82 PFSFEKVQLQQ-QRNIEAQARQVRYQAIQQHLN--HNEMLVTAHHLDDQSETFLLALKR- 137 Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ T+ ++ I RP L R + +L + ++ D SN D R+E Sbjct: 138 ----GSGVKGLAAMPTLSRLFSVPIFRPLLSVTRRQLEQYLAENQLTAIFDESNDDLRYE 193 Query: 201 RVRVRRFV 208 R +R V Sbjct: 194 RNFLRHQV 201 >gi|319762814|ref|YP_004126751.1| tRNA(ile)-lysidine synthetase [Alicycliphilus denitrificans BC] gi|330824894|ref|YP_004388197.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601] gi|317117375|gb|ADU99863.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans BC] gi|329310266|gb|AEB84681.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601] Length = 335 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 22/185 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS LL+A + R G++ A V H L+ A ++ +C+RL+ Sbjct: 18 LAVGLSGGADSTALLLAC----AGRWPGQVH--AFHVHHGLQAAADGFEQHCVALCARLQ 71 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYAL-----ISEHAKTINATLIMTAHTFDDQLET 134 + SV V +++ Q+ AAR+ARY + A+ T+ + H DDQ+ET Sbjct: 72 VPLSVRRVDARHASGQS-PEDAARQARYKAFEALALDNQARAAIGTIALAQHA-DDQVET 129 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + R G G++G+ L SRP LR D+R++L Q+ W EDP Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWERGGLHWSRPLLRVAGADVRAWLQQQGEHWVEDP 184 Query: 193 SNTDD 197 +N D+ Sbjct: 185 TNADE 189 >gi|205351573|ref|YP_002225374.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271354|emb|CAR36147.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 403 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 5/151 (3%) Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110 + AI + H L A VR+ VC R ++ V + G+ A AREARY Sbjct: 16 VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF 75 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 ++ + ++ TA DDQ ET + +R G+ G C L L RP L Sbjct: 76 AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGECSPFAGTLLL---RPLL 130 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 R R+ + + ++ + W ED SN DD ++R Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161 >gi|301062530|ref|ZP_07203173.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2] gi|300443387|gb|EFK07509.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2] Length = 478 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 85/189 (44%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVAVSGG DS+ +L+ L S L D + DH LR + E R+V+ + + Sbjct: 24 VLVAVSGGPDSV-VLLDLLSRLKDAL--SLTLVVAHFDHGLRPRDDEGETRFVAALADAM 80 Query: 81 RIAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V+ K P G L AR+ RY + A I HT DDQ ETV Sbjct: 81 NLP--FVTEKALSPPGGNGISLEEEARDLRYEFLYGAKAAHGAHKIALGHTLDDQAETVL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R GLSG+ D I RP + R +I +L RN+ DPSN + Sbjct: 139 MRLLRGSGP--TGLSGIPPVRHPD----IIRPLIEVTRLEIERYLAHRNLKHITDPSNFE 192 Query: 197 DRFERVRVR 205 + R R+R Sbjct: 193 KQHLRNRIR 201 >gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23] gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23] gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99] Length = 648 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSDLVPKEAISVAHLNHHLRENAANEQNVVETFCERHG 80 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + Q G+ AR RY + N + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I ++ + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|149183227|ref|ZP_01861672.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1] gi|148849060|gb|EDL63265.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1] Length = 467 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 13/193 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 IL AVSGG DS+ LL H + R+ +K +A+ VDH R E + +E+ +V C + Sbjct: 24 ILAAVSGGPDSLSLL---HFLNKYRNLWNVKVAAVCVDHMFRGEQSYEELLFVKKTCEEM 80 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + GL AR ARY L + K T + H DDQ+ET+ Sbjct: 81 DIPFFGERLNVQGMLDDQKAGLQEGARNARYHLFARLIKDEGFTKLAFGHHGDDQVETIL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M+ R + G + + + D I RP L +E+I + + + DPSN Sbjct: 141 MQLTRGSS----GRAKIGIPVQRDFYGARIIRPLLCLSKEEILKYCSETGLQPKFDPSNE 196 Query: 196 DDRFERVRVRRFV 208 + R R R+ V Sbjct: 197 KKDYTRNRFRQEV 209 >gi|330872710|gb|EGH06859.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 441 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + AI V H L+ A + VC L +A Sbjct: 26 VGFSGGLDSTVLLHLLAELARRESLPALH--AIHVHHGLQAAADAWPEHCRQVCQALDVA 83 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V K +P L AAR+ARY ++ + +++T DDQ ET+ R R Sbjct: 84 FELVRVK-VEPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ Q+ + W EDPSN D +F R Sbjct: 141 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARQQGLRWVEDPSNDDQQFSRNF 197 Query: 204 VRRFV 208 +R V Sbjct: 198 LRSQV 202 >gi|305680519|ref|ZP_07403327.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC 14266] gi|305660050|gb|EFM49549.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC 14266] Length = 302 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 94/198 (47%), Gaps = 28/198 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +L+ +SGG+DS+GL+ A + D A+ VDH L+ ++A R V+ S Sbjct: 33 VLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSATVADRAVAMARSLG 85 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 A SV K + A AREARY AL++ A + + AHT DDQ ET + S Sbjct: 86 AEARSV---KVQVKPGNIEAQAREARYKALMT--AAAAESRSVWVAHTMDDQAETYLLGS 140 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R A GM +SG + RPFL RR D + + + DP N D RF Sbjct: 141 LRGRA-VGMPVSGT-----------VIRPFLSVRRADTVAACAELGLEVWHDPMNADPRF 188 Query: 200 ERVRVRRFVRDI--DLHA 215 RVRVR V + D+H Sbjct: 189 RRVRVRTEVLPLLADIHG 206 >gi|227432630|ref|ZP_03914606.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351600|gb|EEJ41850.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 435 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 15/190 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + ++ +P ++VAVSGG DS+ L+ AL S K V++ RE + Sbjct: 8 EKILQTIKQYNWPETVIVAVSGGVDSVVLVHAL-------SKTKANLVIAHVNYRFREES 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D+ +V + ++ W++ P + AAR+ RY E A+ + I AH Sbjct: 61 DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R + MG GM N + RPFL ++++ ++ + Sbjct: 120 HADDQAETVLLKMIRGGRLQQMG--GMQTK-----NHKVIRPFLSITKQELITYAQDNQL 172 Query: 187 SWCEDPSNTD 196 W +D +N D Sbjct: 173 GWRQDKTNFD 182 >gi|311064792|ref|YP_003971517.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum PRL2010] gi|310867111|gb|ADP36480.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum PRL2010] Length = 372 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 7/176 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L V + S+G I+ A+ VDH L+E + + + + C L Sbjct: 45 VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSAEVAQSAARRCCGLG 101 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A +VV + S G+ AAAR+ARY +++ A+ +A ++ AHT DDQ ETV M Sbjct: 102 LAPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R L+GM + D + +RPFLR R D I+W +DP+N D Sbjct: 162 RSSGLD--ALAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214 >gi|322691770|ref|YP_004221340.1| hypothetical protein BLLJ_1581 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456626|dbj|BAJ67248.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 388 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ +N+ Q GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 LGPVIM--RNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + +RP L R + + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215 >gi|262166320|ref|ZP_06034057.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223] gi|262026036|gb|EEY44704.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223] Length = 440 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 19/204 (9%) Query: 12 FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65 FV+ L YP LV A+SGG DS LL L + G+ +F A+ V H L Sbjct: 8 FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + C I+ + + + + AREARY +S+H + TL++ Sbjct: 61 ADQWAQDCQTWCQAANISCQIERVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQLET + +R KG+ ++RP L R+DI ++ +Q+ Sbjct: 119 GQHADDQLETFLLALKRGSGPKGLAAMAAYGPFAQGH---LARPLLTVSRQDIEAYAMQK 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +SW D SN D R+ER +R + Sbjct: 176 KLSWVTDESNFDTRYERNFLRHHI 199 >gi|227546576|ref|ZP_03976625.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133972|ref|YP_004001311.1| mesj [Bifidobacterium longum subsp. longum BBMN68] gi|227212893|gb|EEI80772.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773271|gb|ADQ02759.1| MesJ [Bifidobacterium longum subsp. longum BBMN68] Length = 388 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + S G ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ +N+ Q GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 LGPVIL--RNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ L+GM + +RP L R + + + +DP+N D Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215 >gi|325679361|ref|ZP_08158946.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8] gi|324108958|gb|EGC03189.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8] Length = 444 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LV +SGG+DS LL+ L + D SA V+HC+R E A + + +C L Sbjct: 25 LLVGLSGGADSAALLLCLDELGYD-------VSACHVNHCIRGEEADRDQHFCERLCEGL 77 Query: 81 RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V ++ + P + AR RY + E I+A I TAH DD LET Sbjct: 78 GIGIIVRRVDVPAYCRANPVSE-EEGARLLRYNALQE----ISADKICTAHNLDDCLETT 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G GL G+ N I RP + C R DI ++L +R + D +N Sbjct: 133 LFNLAR-----GSGLKGIASIPPVRGN--IIRPLIECSRADIEAYLAERGQDFVTDSTNL 185 Query: 196 DDRFERVRVRRFV 208 D + R ++R V Sbjct: 186 LDEYSRNKLRHKV 198 >gi|289668288|ref|ZP_06489363.1| cell cycle protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 469 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 11/182 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS + LH + + + + A+ V H L A + C L+ Sbjct: 52 VLLAYSGGMDSN---VLLHLLAATPRYRQAGLRALHVHHGLHTDADAWAAHCQRSCDALQ 108 Query: 82 IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + GL AAAR AR+ + HA L + AH DDQ ET +R+ Sbjct: 109 VPLQIVQVHVERDSGLGLEAAARNARHTAFA-HALAAGEWLAL-AHHRDDQAETFLLRAL 166 Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R A GL+ M + LW RP L R D+ ++ L + + W EDPSN D R Sbjct: 167 R--ASGPEGLAAMRPQRPFANGTLW--RPLLAHARADLLAYALAQGLRWIEDPSNADPRH 222 Query: 200 ER 201 +R Sbjct: 223 DR 224 >gi|156740870|ref|YP_001430999.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii DSM 13941] gi|156232198|gb|ABU56981.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii DSM 13941] Length = 676 Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 103/228 (45%), Gaps = 28/228 (12%) Query: 4 SPIESVRFFVRS--LVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 S ++SVR +R ++ P A ++VAVSGG DS+ LL AL + D + + +DH Sbjct: 3 SLVDSVRAMLRRYRMIMPGAPVVVAVSGGPDSLCLLDALVHLRDDLA---CDLHVVHLDH 59 Query: 61 CLR---ETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAK 115 LR A+ + C L V + + L AA R ARY L++ A Sbjct: 60 RLRGAEAAAEAAFVAETAACLNLPCTVEAVDVRALALERNLNLHAAGRLARYRLLARVAL 119 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------------- 160 TI A + TAH DDQ ETV + R GL GM + ++ Sbjct: 120 TIGAQAVATAHHADDQAETVLLHLVRGAGVA--GLRGMRPVVAWEEWRTFAGDPSLQADH 177 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L + RP L R I ++ +R ++ DPSN D R+ R R+R+ V Sbjct: 178 LRPRLIRPLLDVPRARIEAYCTERGLTPRRDPSNADRRYLRTRIRQDV 225 >gi|154505539|ref|ZP_02042277.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149] gi|153794197|gb|EDN76617.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149] Length = 469 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ +SGG+DS+ LL L + F I A+ V+H LR E AK + R+ C Sbjct: 21 VIAGISGGADSICLLFVLLRLQEKIGFDVI---AVHVNHGLRGENAKRDERFTETFCRER 77 Query: 81 RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H V ++ + + A R R E T I AH +D ET+ Sbjct: 78 NVPCIVYHENVKEIAAQKKLSVEEAGRLVRRKAFEEVRIRYGGTKIALAHHQNDNAETML 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+ + + +N ++ RP L R++I +L + +S+CED +N Sbjct: 138 LNLAR-----GTGIRGL--SGIRPVNGYMIRPLLGINRKEIEYYLKEHQLSYCEDETNAG 190 Query: 197 DRFERVRVR 205 D + R R+R Sbjct: 191 DEYTRNRIR 199 >gi|312883825|ref|ZP_07743544.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122] gi|309368574|gb|EFP96107.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122] Length = 436 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 24/197 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC-- 77 I++A+SGG DS +L L + I A+ V H L A D + C Sbjct: 20 GQIVLALSGGLDSRVMLALLKKYCENTGSKAI---AVHVHHGLSIHADDWAKQCQKWCLE 76 Query: 78 SRLR--IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S L + H + K L +AR+ARY +S+H + +++T DDQLET Sbjct: 77 SGLECFVEHVSLDLKGK----SLEESARDARYVALSKHLNEND--VLLTGQHADDQLETF 130 Query: 136 YMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + +R +G+ ++ M + +L RP L +R DI S+ N+ W D Sbjct: 131 LLALRRGSGPRGLSCMPQVAPMGNALLV-------RPLLHVKRHDIESYAKDSNLEWLND 183 Query: 192 PSNTDDRFERVRVRRFV 208 SN D RFER +R + Sbjct: 184 ESNQDKRFERNYIRHTI 200 >gi|77918602|ref|YP_356417.1| cell cycle protein [Pelobacter carbinolicus DSM 2380] gi|77544685|gb|ABA88247.1| cell cycle protein [Pelobacter carbinolicus DSM 2380] Length = 458 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 93/207 (44%), Gaps = 22/207 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 ILV +SGG+DSM LL L V ++ A +DH +R + D+ +V+ C R Sbjct: 21 ILVGLSGGADSMVLLDVLLHVADSL---QLAILAAHLDHGMRPESADDAAFVARFCRRRD 77 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H V + + GL AAREAR + + A+ I H +DQ+ET Sbjct: 78 VPLTVGHRDVPALARQHKQGLEEAAREARREFLQQTARVEGCRFIALGHHRNDQVETFLH 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G GLSG+ L RP L R+DI ++L I ED SN D Sbjct: 138 RLLR-----GSGLSGLAGMRLRSGPF--IRPLLSFSRQDILAYLDDHQIPHVEDASNADT 190 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQ 224 F R R+R H L +++ F Sbjct: 191 VFTRNRLR--------HELLPRLRDFN 209 >gi|72080544|ref|YP_287602.1| hypothetical protein MHP7448_0205 [Mycoplasma hyopneumoniae 7448] Length = 286 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 ++ VSGGSDSM LL K K + V H LR A E VS C + Sbjct: 1 MIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 48 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + ++S+ + K + L + R RY + K N T ++ H DD LETV+++ Sbjct: 49 YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 108 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ G+ + N+ I RPFL R +++ IR Q+ I + +D SN Sbjct: 109 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKRIPYLDDQSNFTG 163 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 164 KYQRNQIR 171 >gi|327438074|dbj|BAK14439.1| predicted ATPase of the PP-loop superfamily [Solibacillus silvestris StLB046] Length = 468 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +L+A SGG DSM LL + + + I+ + VDH LR E + + ++V C Sbjct: 24 LLIACSGGVDSMALLSFFYHF---QHYFNIELAVAHVDHMLRGEQSAQDRQFVEQACEDW 80 Query: 81 RI---AHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + ++ + K + G M A R+ RY T T ++TAH DDQLE++ Sbjct: 81 AIPFYSCAIPIAEIQKKEGGNMQAICRKERYHFFETVMHTHKFTKLVTAHHADDQLESML 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + A GL G+ + + + RPFL +++I +L + + EDPSN Sbjct: 141 MAMTK--ASSLNGLKGILPSRKFQ-QFTVIRPFLMVTKDEIGEYLHSKGHLYREDPSNAK 197 Query: 197 DRFERVRVRRFV 208 + + R R R V Sbjct: 198 NDYTRNRFRHNV 209 >gi|293375859|ref|ZP_06622125.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909] gi|325841824|ref|ZP_08167484.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1] gi|292645504|gb|EFF63548.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909] gi|325489854|gb|EGC92206.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1] Length = 459 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 6/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG+DSM LL L + + + V+H RE + + V+ + Sbjct: 21 VVVAVSGGADSMALLNLLVEI---KELYNLHLVVAHVNHKKRENSDLDEVLVNKIALENG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + V AR RY A A I+TAH DD LET R Sbjct: 78 LDYEVYYLPKCLTNENFHEYARRERYNFFKRVAANYKADCIVTAHHADDHLETQIYRLL- 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 Y GL G+ + Y L I RP + ++DI + + I + ED SN D + R Sbjct: 137 -YHSTVSGLIGIEPIVEY-CGLKIIRPLIEVTKDDIYKYCSESRIEYREDESNQSDVYTR 194 Query: 202 VRVRRFV 208 R+R+++ Sbjct: 195 NRIRKYI 201 >gi|302381981|ref|YP_003817804.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192609|gb|ADL00181.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 409 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 86/309 (27%), Positives = 130/309 (42%), Gaps = 31/309 (10%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 AI+VDH L A R ++ + W+ KP TGL AAAR AR+ALI+E A Sbjct: 20 AITVDHGLNPDAAAWSRRCAEAARAVGADWVERRWEGDKPATGLPAAARHARHALIAEAA 79 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPF 169 + A +++ AHT +D E+ +MR+ +G L G+ + L + RP Sbjct: 80 RDAGAKVVLIAHTANDIAESDWMRA------RGTMLGGLREWSPSPAWPEGRGLMLLRPM 133 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-DLHAL-YLKMKKFQDLR 227 + RRED+R +L W EDP N + F R + RR + + + L L+ ++ R Sbjct: 134 VNERREDLRGWLRSAGEGWIEDPGN--EGFGRGKARRALLPLPEGEGLSVLERSDWERER 191 Query: 228 VK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284 V+ + + P L H ++ A S L L ++ G LP Sbjct: 192 VRGLALAGSHRNPSPFRLKAHRSALRASSALPLGEGFIWAGEALAMNLLCAAGHDRLPRS 251 Query: 285 RSMERVMLFLK---------SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 + + L +G R S R++I R A L R L L + Sbjct: 252 ERLAALADRLAGGDPFTATLAGARIEASPDRMIIGREAGEL----KRRPPGPLALDTDTP 307 Query: 336 TVWDGRYQF 344 VWDGRY+ Sbjct: 308 AVWDGRYEI 316 >gi|325278075|ref|ZP_08143594.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51] gi|324096782|gb|EGB95109.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51] Length = 247 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 87/202 (43%), Gaps = 42/202 (20%) Query: 24 VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +A SGG DS LL +L+D RS A+ V H L+ A + VC+ L Sbjct: 15 IAFSGGLDSTVLL----HLLADYARSHAVPPLRAVHVHHGLQAAADAWPAHCQAVCANLG 70 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVY---- 136 IA V+ + S P L AAR+ARYA + T+ ++ T DDQ ET+ Sbjct: 71 IALEVIHVQVS-PGASLEQAARDARYAAFQQ---TLGPGDILFTGQHCDDQAETLLLRLL 126 Query: 137 ----------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 M QR + + RP L C R+ ++++ R + Sbjct: 127 RGAGLRGLAAMPGQRPLGQGSL-----------------VRPLLGCARQLLQAYAQARGL 169 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 +W +DPSN D RF R +RR V Sbjct: 170 AWIDDPSNADTRFARNFLRRKV 191 >gi|313639795|gb|EFS04533.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171] Length = 648 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 10/191 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + K S ++H LRE A E V + C + Sbjct: 24 LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHE 80 Query: 82 IA---HSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K +K Q G+ AR ARY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFFIEEVNVKKRAKTMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SGM I RPFL + +I + + +++ D SN+ Sbjct: 141 RLVR--GSSSIGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197 Query: 198 RFERVRVRRFV 208 ++ R R R+ + Sbjct: 198 KYTRNRYRKEI 208 >gi|312128221|ref|YP_003993095.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778240|gb|ADQ07726.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 456 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL + + + S + + ++H LR A D+ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E A+ +N I+ H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAQELNIDRILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G+ G+ + D+ I+RP + RE+I F NI + D +N Sbjct: 140 NLFR-----GSGMEGLASVPPVRDI---IARPLINVSREEIEEFAKVNNIPFVVDKTNFS 191 Query: 197 DRFERVRVR 205 +++R VR Sbjct: 192 LKYKRNIVR 200 >gi|291523831|emb|CBK89418.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium rectale DSM 17629] Length = 514 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 73/341 (21%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 +LVA+SGG+DS+ LL+ L+ + + ++ F+ A+ V+H +R ++++ R+ SD+C Sbjct: 21 VLVALSGGADSVCLLLVLNEI-KRQCADELDFALEAVHVEHGIRGAESREDARFASDLCE 79 Query: 79 RLRI---AHSVVSWKNSKPQT-GLMAAAR----EA---------RYALISEHA-----KT 116 RL I HSV + +K GL AAR EA RY E A +T Sbjct: 80 RLNIPCHVHSVDVPQYAKSHGLGLEEAARILRYEAFEKEVARILRYEAFEEEAGRYPCET 139 Query: 117 INAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 NA+ ++ AH +D ETV + R K GL+GM + + +I Sbjct: 140 ANASDQKQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAK--GLAGMHPVSVKNGVTYI- 196 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLH 214 RP L R I +L + ++ D +N D + R ++R R + I+ Sbjct: 197 RPLLSATRAQIEEYLKENGQAFVTDATNADTAYSRNKLRHDVFPLLLQINDRAIEHINES 256 Query: 215 ALYLK-MKKF--QDLRVKVNNAVA-------MLIPKYLTVH--MRSIIA------ISQDI 256 A L M F Q L+ ++ V+ + I ++ ++H ++S +A S + Sbjct: 257 AGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRL 316 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLF 293 +I ST + L++++ G +I+LP +S V+LF Sbjct: 317 KDITSTHISALVKLAGQQSGRKINLPYGIIAEKSFGDVILF 357 >gi|323340112|ref|ZP_08080377.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus ruminis ATCC 25644] gi|323092489|gb|EFZ35096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus ruminis ATCC 25644] Length = 450 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 13/200 (6%) Query: 14 RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + + PA+ +LVAVS G DSM LL L L ++ ++ + VDH LRE +K E Sbjct: 16 KKMGVPANETVLVAVSTGCDSMTLLSLLQR-LPEKMRPTVQVAY--VDHQLREQSKKETD 72 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ C + + W K P+ G+ +ARE RY + + ++TAH +D Sbjct: 73 FITKYCQKNGLVLFKNVWEKEFHPKKGIEESAREFRYRFFEKIMEETGIEYLLTAHHSND 132 Query: 131 QLETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 Q ET+ M++ R D + L G+ + + RP L +E ++ + + I + Sbjct: 133 QAETILMKAVRGGDLEQ----LVGIKSARTFGTGKLL-RPLLHFSKETLKEYAERNQIKY 187 Query: 189 CEDPSNTDDRFERVRVRRFV 208 ED +N D R R+R V Sbjct: 188 FEDETNALDDVLRNRLRHHV 207 >gi|167772098|ref|ZP_02444151.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM 17241] gi|167665896|gb|EDS10026.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM 17241] Length = 467 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 + AVSGG+DS+ LL L + L G + A ++HCLR E+ +DE + V +C++ Sbjct: 21 VAAAVSGGADSVALLDFLCAQLD---LG-LTVRACHLNHCLRGEESDRDE-QLVRTMCAQ 75 Query: 80 LRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +A V V + GL AAREARYA E A+T + I TAHT D ETV Sbjct: 76 YGVALDVRRVDVRALAHTRGLSLETAAREARYAFFEEVART-HGCKIATAHTLSDAAETV 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G+ G+C + + I RP + C R ++ + + D +N Sbjct: 135 VLNLAR-----GTGIVGLCG--IPPVRGDIVRPLIGCTRAQTEAYCAAHGLCYVTDSTNL 187 Query: 196 DDRFERVRVRRFV 208 D R +R + Sbjct: 188 TDSCTRNHIRHNI 200 >gi|237736633|ref|ZP_04567114.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium mortiferum ATCC 9817] gi|229420495|gb|EEO35542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium mortiferum ATCC 9817] Length = 441 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLR--ETAKDEVRYVSDVC 77 I+V SGG DS+ L+ L + KI F + ++H LR E +DE ++ Sbjct: 23 IVVGFSGGPDSVFLVEMLLKLRE-----KIDFDIVLVHINHLLRGEEAQRDEDFSINYGK 77 Query: 78 SR-LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 S+ L++ ++ + + GL A REARY+ E + N I AH DDQ+ET Sbjct: 78 SKGLKVFARKINITSLGKEKGLSLEEAGREARYSFYKEVLEKTNGNKIALAHNKDDQIET 137 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R G GLSG+ + I + +I RP + +I ++L + NIS+C D +N Sbjct: 138 FMFRLTR-----GTGLSGL-EGIATKRDRYI-RPISEIYKSEIVNYLDENNISYCIDSTN 190 Query: 195 TDDRFERVRVR 205 ++ F R +R Sbjct: 191 LENEFTRNSIR 201 >gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC 19061] gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC 19061] Length = 443 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 10/184 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF----GKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+ SGG DS +L+ L + L D I AI + H L A V + +C Sbjct: 22 ILLGFSGGLDST-VLLHLLTRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVEHCRQMC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ + Q G+ AAAREARY + + +++TA DDQ ET + Sbjct: 81 ADWKVDFRTEKVRLDIRQNGIEAAAREARYQSFQQMLQP--DEILITAQHLDDQAETFLL 138 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +R GLS M + + I RP L R ++ + + + W ED SN DD Sbjct: 139 ALKRGSGP--AGLSSMPSRMPFSGTTLI-RPLLNVSRAELEVYARGKELEWIEDDSNQDD 195 Query: 198 RFER 201 R++R Sbjct: 196 RYDR 199 >gi|238922945|ref|YP_002936458.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656] gi|238874617|gb|ACR74324.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656] Length = 514 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 73/341 (21%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 +LVA+SGG+DS+ LL+ L+ + + ++ F+ A+ V+H +R ++++ R+ SD+C Sbjct: 21 VLVALSGGADSVCLLLVLNEI-KRQCADELDFALEAVHVEHGIRGAESREDARFASDICE 79 Query: 79 RLRI---AHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTI----------------- 117 RL I HSV V + GL AAR RY + I Sbjct: 80 RLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEKEVARILRYEAFEEGAGRYPCEP 139 Query: 118 -NAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 NA+ ++ AH +D ETV + R KG LSGM + + +I Sbjct: 140 ANASDQKQGNSRQVVVAVAHHMEDNAETVLFQMLRGSGAKG--LSGMHPVSVKNGVTYI- 196 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLH 214 RP L R I +L + ++ D +NTD + R ++R R + I+ Sbjct: 197 RPLLSATRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINES 256 Query: 215 ALYLK-MKKFQDLRVKV---------NNAVAMLIPKYLTVH--MRSIIA------ISQDI 256 A L M F + ++K V + I ++ +H ++S +A S + Sbjct: 257 AGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFECLHPALKSGVARECIHLASGRL 316 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLF 293 +I ST + L++++ G +I+LP +S V+LF Sbjct: 317 KDITSTHIGALVKLAGQQSGRKINLPYGIIAEKSFGEVILF 357 >gi|258510216|ref|YP_003183650.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476942|gb|ACV57261.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 475 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 5/201 (2%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + FF + + AH ++ VSGG DSM LL + FS + V H LRETA Sbjct: 12 ISFFQQHRLETAHAVLGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +V C I + K + GL AAAR ARY +++ A+ + +I+ AH Sbjct: 72 DAAFVERYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALADRAR-VKGGVILVAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D+LET MR R G+G M + + + RP L + +I + + Sbjct: 131 AQDELETFIMRLLRGAGPGGLG--AMRPEAEMN-GVRVLRPLLAVEKSEIERYAALHGVP 187 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 ED +N D RF R RVR+ V Sbjct: 188 HVEDETNEDPRFFRNRVRQVV 208 >gi|15834848|ref|NP_296607.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] gi|270285014|ref|ZP_06194408.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] gi|301336412|ref|ZP_07224614.1| tRNA(Ile)-lysidine synthase [Chlamydia muridarum MopnTet14] gi|61216745|sp|Q9PL79|TILS_CHLMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|7190268|gb|AAF39100.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] Length = 321 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 24/264 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+A+SGGSDS+ L+ L RS G I F+A+ VD+ RET+ Sbjct: 10 KQLEVFFSSLDKKKKYLLALSGGSDSLLLMYLL------RSRG-ISFTAVHVDYGWRETS 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMT 124 E ++ +C R +I + + + P + + AR+ RY L K + Sbjct: 63 YQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRYELFYRLCKERLFAGVFL 122 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DDQ ET+ +R + +G L GM Y + + RP L + I L Sbjct: 123 GHHADDQAETIL---KRVFEGAHLGNLKGMARYGTYK-GITLLRPLLHITKRQIVEALDN 178 Query: 184 RNISWCEDPSNTDDRFERVRVRR---------FVRDIDLHALYLKMKKFQDLRVKVNNAV 234 I + +D +N D+RF R R+R F ++I L+L + +LR ++ Sbjct: 179 YRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFLA-EDSAELREYLDQQA 237 Query: 235 AMLIPKYLTVHMRSIIAISQDILN 258 A + + + + + + Q++L Sbjct: 238 APFLSQVIDNEIGQFLPVGQELLQ 261 >gi|119946581|ref|YP_944261.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37] gi|119865185|gb|ABM04662.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37] Length = 460 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 18/191 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSRLR 81 +A+SGG DS+ + LH R+F K K+S A ++H L + A + ++C+ L Sbjct: 30 IALSGGLDSV---VLLHLFTRLRAFDK-KYSLCAHHINHGLSDNAAHWQLFCENLCASLA 85 Query: 82 I---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V+ K K +T L A ARE RYA ++ ++ + ++TAH DDQLETV + Sbjct: 86 VDFCCSPVILEK--KNRTSLEALAREKRYACLT--GNLLDNSYLITAHHQDDQLETVLLA 141 Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +R G+ G+ M L RP L R+ + ++ + W ED SN D Sbjct: 142 LKRGSGSTGLQGIQKMQKLQKGHL----IRPLLNFSRQQLAAYAELFQLDWVEDESNQDQ 197 Query: 198 RFERVRVRRFV 208 F+R +R+ + Sbjct: 198 DFDRNFIRQTI 208 >gi|197302373|ref|ZP_03167430.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC 29176] gi|197298552|gb|EDY33095.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC 29176] Length = 498 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+ VSGG+DS+ LL L + F I V+H LR E A+ + YV ++C +L Sbjct: 25 IVTGVSGGADSVCLLFVLCELRKKLGFEVI---VCHVNHQLRAEAAEQDEAYVKELCRKL 81 Query: 81 ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 RI H V + L A R R + A I TAH +D ETV Sbjct: 82 DVPCRIFHENVELIAKNGKKSLEEAGRIVRSNAFETVCRESGANKIATAHHKNDNAETVL 141 Query: 137 MRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL GMC +Y + RP L R++I +L + IS+C D +N Sbjct: 142 LNLAR-----GSGLQGMCGIRPVYGNRI---RPLLCLTRKEIEEWLEEEQISYCTDETNE 193 Query: 196 DDRFERVRVR 205 +D + R R+R Sbjct: 194 EDEYTRNRIR 203 >gi|224532919|ref|ZP_03673530.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23] gi|224512157|gb|EEF82547.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23] Length = 440 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI + D +N + + R RVR Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204 >gi|331003927|ref|ZP_08327416.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411947|gb|EGG91347.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon 107 str. F0167] Length = 497 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 23/200 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG+DS+ LL L + + +I+ + ++H +R E AK + +V D C RL Sbjct: 23 IVLGVSGGADSICLLNILSCI---QKALEIRLFVVHINHGIRGEEAKRDEDFVRDFCKRL 79 Query: 81 RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--------NATLIMTAHTF 128 + H + + + A R+ARY+ AK I I AH Sbjct: 80 NVEFFAFHYDIKKMAREQKISEEEAGRKARYSTFDTVAKKIIQKEGADAQNVKIAIAHNK 139 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ET+ R G G+SG+ + + N I RP L R++I +L + NI + Sbjct: 140 DDNAETILHNLSR-----GSGISGLKGILAQNGN--IIRPLLSFSRQEIEEYLSKNNIEY 192 Query: 189 CEDPSNTDDRFERVRVRRFV 208 D +N ++ + R +R V Sbjct: 193 MTDSTNLENEYTRNVLRNEV 212 >gi|15595133|ref|NP_212922.1| hypothetical protein BB0788 [Borrelia burgdorferi B31] gi|216264898|ref|ZP_03436890.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a] gi|218249437|ref|YP_002375287.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7] gi|223889299|ref|ZP_03623886.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b] gi|225549361|ref|ZP_03770333.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a] gi|226321219|ref|ZP_03796753.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805] gi|226321253|ref|ZP_03796781.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26] gi|6136576|sp|O51728|TILS_BORBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695536|sp|B7J0N4|TILS_BORBZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2688713|gb|AAC67121.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|215981371|gb|EEC22178.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a] gi|218164625|gb|ACK74686.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7] gi|223885220|gb|EEF56323.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b] gi|225369989|gb|EEG99430.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a] gi|226233285|gb|EEH32036.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26] gi|226233373|gb|EEH32120.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805] gi|312147795|gb|ADQ30454.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi JD1] gi|312149540|gb|ADQ29611.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi N40] Length = 440 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----SVNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI + D +N + + R RVR Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204 >gi|239617939|ref|YP_002941261.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506770|gb|ACR80257.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1] Length = 469 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ILVAVSGG DSM LL H ++S + + ++DH LR+ + ++E ++ C + Sbjct: 24 ILVAVSGGKDSMALL---HFLVSKKERLGCEICVANMDHGLRDDSGREEAVMIASFCEKH 80 Query: 81 RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V + + L AAR RY + + + A I AH +D +ET+ Sbjct: 81 DVPFYHERRDVTQYHKNNRGLSLEEAARIVRYDFLFNAREKLGADKIALAHHLNDLVETM 140 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ + +N I RP L ++I ++ I + EDP+N Sbjct: 141 LMRIAR-----GTGLKGVIS--MKPMNNSIIRPLLSVGVQEILDYVTINMIPYKEDPTNV 193 Query: 196 DDRFERVRVR 205 + ++R +R Sbjct: 194 LEVYDRNFIR 203 >gi|195942001|ref|ZP_03087383.1| hypothetical protein Bbur8_03899 [Borrelia burgdorferi 80a] gi|221217597|ref|ZP_03589066.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a] gi|224533444|ref|ZP_03674037.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a] gi|221192543|gb|EEE18761.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a] gi|224513406|gb|EEF83764.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a] Length = 440 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI + D +N + + R RVR Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204 >gi|332290992|ref|YP_004429601.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332169078|gb|AEE18333.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 435 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 93/196 (47%), Gaps = 27/196 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74 + ILV VSGG DSM LL+ R G +SV HC LR E+ D+V +V+ Sbjct: 19 SKILVTVSGGLDSMLLLLLC------RQAG----LTMSVAHCNFNLRGVESDGDQV-FVA 67 Query: 75 DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C+ I + + S +T AARE RY E + + I+TAH +D Sbjct: 68 SYCTLHNIPIYIKGFDTSAYAKTSKTSTQIAARELRYQWFKELSVAEDFDYILTAHHLND 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G G+ G+ T + +N I RP L+ R+ IR++ L+ + W E Sbjct: 128 DLETFLINLGR-----GTGIKGL--TGIPVVNGEIVRPLLKFSRKQIRNYALKEGLQWRE 180 Query: 191 DPSNTDDRFERVRVRR 206 D SN D + R +R Sbjct: 181 DSSNGTDNYVRNHIRH 196 >gi|222528655|ref|YP_002572537.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455502|gb|ACM59764.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 456 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL +L + + + ++H LR A D+ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLL---DCILRLKDKYNLDITVAHLNHMLRPEADDDEKFVIEICKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E A+ +N I+ H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ + D+ ++RP + RE+I + N+ + D +N Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---VARPLINISREEIEEYAKLNNVPFVVDKTNFS 191 Query: 197 DRFERVRVR 205 +++R VR Sbjct: 192 LKYKRNIVR 200 >gi|225550286|ref|ZP_03771245.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a] gi|225369154|gb|EEG98608.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a] Length = 440 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI + D +N + + R RVR Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204 >gi|313635123|gb|EFS01457.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067] Length = 648 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 10/191 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + K S ++H LRE A E V + C + Sbjct: 24 LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHE 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR ARY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SGM I RPFL + +I + + +++ D SN+ Sbjct: 141 RLVR--GSSSIGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197 Query: 198 RFERVRVRRFV 208 ++ R R R+ + Sbjct: 198 KYTRNRYRKEI 208 >gi|127513547|ref|YP_001094744.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4] gi|126638842|gb|ABO24485.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4] Length = 474 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 93/215 (43%), Gaps = 16/215 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + P + R PA LV A SGG DS L L L + + + + V H Sbjct: 19 VKPAAGINSGSRPATKPAMKLVLAYSGGVDSEVLAHGLS--LFAKQHPEFNYLLVHVHHG 76 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG----LMAAAREARY-ALISEHAKT 116 L A + S R R +S K +G L AAAREARY AL SE A Sbjct: 77 LSANADS---WQSHCERRAREYGLPISVKRVTVASGARISLEAAAREARYDALRSELAP- 132 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +++TAH DDQLET+ + +R KG+ G D L RP L R Sbjct: 133 --GDILLTAHHQDDQLETLLLALKRGLGPKGLAAMGEVQAFTPDNPLL--RPLLTSSRAQ 188 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 I +F + +S ED SN D RF+R +R V I Sbjct: 189 IEAFAMAEGLSHIEDESNKDSRFDRNFLRNEVLPI 223 >gi|297520460|ref|ZP_06938846.1| tRNA(Ile)-lysidine synthetase [Escherichia coli OP50] Length = 286 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 9/189 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +VC + ++ V + ++ G+ AR+ RY + + +++TA DDQ Sbjct: 64 CENVCQQWQVPLVVERVQLAQEGLGIEVQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R ++ + L + W ED Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 179 SNQDDSYDR 187 >gi|300857288|ref|YP_003782272.1| putative tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM 13528] gi|300437403|gb|ADK17170.1| predicted tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM 13528] Length = 468 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL L+ + R I V+HCLR + A + YV C L Sbjct: 21 VIVAVSGGPDSICLLHILYVL---REKLDITLCVAHVNHCLRGKDADGDEEYVKKFCENL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V+ + + +A R+ RY+ + + A I AH +DQ ET+ Sbjct: 78 KIQFKSLKIDVNHVSQEEGISCESAGRKVRYSFFEKLKDELKAQKIAIAHNANDQAETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ N+++ RP + R++I + N++ D +N + Sbjct: 138 MRIMR-----GAGLDGLVGIRPVRDNIYV-RPLICSTRDEIEKYCSLNNLNPRIDKTNLE 191 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 192 TLYSRNKIR 200 >gi|294786616|ref|ZP_06751870.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305] gi|315226203|ref|ZP_07867991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Parascardovia denticolens DSM 10105] gi|294485449|gb|EFG33083.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305] gi|315120335|gb|EFT83467.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Parascardovia denticolens DSM 10105] Length = 408 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 15/181 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + S+G I+ A +DH L+ + ++ C +L Sbjct: 45 VLVACSGGRDSLALAYVARIVCA--SWG-IRCGAAIIDHQLQADSGQVADQTAEQCRKLG 101 Query: 82 IAHSVVSWKNSK-PQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---Y 136 +A VV K P G+ AAAR+ RY +++ A+ + ++ AHTF DQ ETV Sbjct: 102 LAPVVVRKVQVKDPHGQGMEAAARQTRYQALTDLARHEGSRCLLLAHTFTDQAETVALGL 161 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNT 195 +R A G+ D++L I RPFL+ R+D + ++W +DP+N Sbjct: 162 LRHPDLRALAGIPARTEKDSVL------ILRPFLKAISRQDTEAICRAAGLAWWDDPANG 215 Query: 196 D 196 + Sbjct: 216 E 216 >gi|154248857|ref|YP_001409682.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1] gi|154152793|gb|ABS60025.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1] Length = 457 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 21/222 (9%) Query: 12 FVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F+R V + +L+AVSGG DS+ +++ L + D I + +H LR A DEV Sbjct: 27 FIREYVPNCSSVLLAVSGGVDSI-VMLDLFNRAKDELL--INIGVATFNHKLRTEADDEV 83 Query: 71 RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +V C L I + V + + + AR RY + AK + I TAH Sbjct: 84 IFVQKFCEGLGIPFFPGEADVKMYCEQNKLSIEEGARILRYEFLKRTAKENGYSFIATAH 143 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D LET+ +R KG G G+ + +N RP + R++I + +R + Sbjct: 144 NANDLLETIILRQI-----KGTGPFGL--AAIKPINGIFIRPLIFFTRKEIEEYAKERKL 196 Query: 187 SWCEDPSNTDDRFERVRVRR----FVRDID--LHALYLKMKK 222 + D +N D + R VR +++I+ + + YLK+ K Sbjct: 197 EYVIDRTNFDIEYNRNFVRHKIVPLLKEINPSVESAYLKLAK 238 >gi|294790630|ref|ZP_06755788.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304] gi|294458527|gb|EFG26880.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304] Length = 474 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + S G ++ A+ VDH L+ + + ++ C+ Sbjct: 45 VLVACSGGRDSLALAYTAKIVCA--SLG-VRCGAVIVDHHLQTGSGLVAQKAAEQCTAYG 101 Query: 82 IAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A ++ + + GL + AR+AR+ + A A++ + AHT DQ ET+ R Sbjct: 102 LAPVLIRRAQVHRTRAGLESDARDARFLQLISAAHDEAASVTLLAHTMSDQAETILFRFL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDD 197 R+ + L+GM T + + +RPFL+ R++ LQ I W +DP+N D+ Sbjct: 162 RNPSI--TALAGM-QTFIRREGVLFARPFLQGLTRQETTDLCLQAGIQWWDDPTNADN 216 >gi|288921152|ref|ZP_06415440.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f] gi|288347461|gb|EFC81750.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f] Length = 591 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 17/207 (8%) Query: 6 IESVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +VR VR V A +LVA SGG+DS+ L A+ V R+ ++ ++VDH Sbjct: 6 VAAVRLGVRDAVADLPPGALVLVACSGGADSLALAAAVAFVAPRRA---LRAGLLTVDHA 62 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + ++ DV ++ R + + P AAR+ R + A+ ++A Sbjct: 63 WDDNSR---ARAEDVAAQGRALGLSLVEILAAPSPRSEGAARDERRKALLAAARRLDAQA 119 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV +R R + LSGM L+ I RP L RR+ R Sbjct: 120 VLLGHTLDDQAETVLLRLARGSGAR--SLSGMP-----ALDGLIRRPLLGLRRDQTRQAC 172 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + EDP+N D F R R R V Sbjct: 173 QFLGLPYWEDPTNADPAFARARTRSRV 199 >gi|293394728|ref|ZP_06639020.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582] gi|291422854|gb|EFE96091.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582] Length = 436 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 7/179 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL L + R +++ A+ V H L A D V + C+ ++ Sbjct: 21 LVAFSGGLDSSVLLHLLVQLRQRRP--ELQLRAVHVHHGLSALADDWVAHCQRQCANWQV 78 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + GL AAAR ARY + + A ++TA DDQ ET + +R Sbjct: 79 PLVVQYVQVESRDGGLEAAARTARYQALQRTLSSGEA--LLTAQHLDDQCETFLLALKRG 136 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ T L D L RP L R + + ++ + W ED SN D RF+R Sbjct: 137 SGPTGLAAMATHGT-LGDSPL--LRPLLGVSRRQLEQYAARQQLDWIEDDSNQDARFDR 192 >gi|169335539|ref|ZP_02862732.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM 17244] gi|169258277|gb|EDS72243.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM 17244] Length = 464 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 16/192 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A+SGGSDS+ LL L+++ +D F A ++H +RE AK + ++V D+C Sbjct: 28 VMIALSGGSDSVCLLHILNTLKNDMGFS---LYAFHLNHNIREEAKRDEKFVLDLCKTYD 84 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S + GL R+ RY LI++ K + TAH D E++ + Sbjct: 85 VPLFLESEDMPALHEDSSLGLEEIGRKKRYELINKIMKENHIDKAATAHHLLDHSESMIL 144 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ G+S D I+ RP L +E+I ++ + + + D +N D Sbjct: 145 NMVRGSGIRGLRGISVKNDNII--------RPILNLTKEEILCYIEENELEYVTDVTNFD 196 Query: 197 DRFERVRVRRFV 208 + R +R + Sbjct: 197 TDYSRNNIRHNI 208 >gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium autotrophicum HRM2] gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium autotrophicum HRM2] Length = 362 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 19/201 (9%) Query: 13 VRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE 69 V +V P IL+ VSGG DS+ L IAL VL + G I ++H LR E+ +DE Sbjct: 20 VHGMVTPGDSILLGVSGGPDSVALAIAL--VLLRKDLG-ITLGIAHINHLLRDKESDRDE 76 Query: 70 VRYVSDVCSRLRIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V ++ L + H + V+ + Q L ARE RYA ++ + T Sbjct: 77 A-FVQELARSLELPFHPLKIDVATLARERQISLEETAREVRYAFFTDLCRHNGYTRTAVG 135 Query: 126 HTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DD E V M R +G+ G+ + D WI RP + + +I +FL ++ Sbjct: 136 HTLDDNAELVLMNLLRGSGPRGLAGIPPVRDH-------WIIRPLIGHTKGEILAFLREK 188 Query: 185 NISWCEDPSNTDDRFERVRVR 205 ++ D +N + F R R+R Sbjct: 189 AQAYVVDSTNLETVFLRNRIR 209 >gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 438 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 90/387 (23%), Positives = 166/387 (42%), Gaps = 53/387 (13%) Query: 22 ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I VA SGG DS+ LL + + + S + + A + H L+ A D + + + + Sbjct: 17 IAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQIFAFHIHHGLQRLADDWLIFCEKLAKKY 76 Query: 81 RIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +I ++ NS+ + + AR RY +S+ + ++ AH +DQ ETV ++ Sbjct: 77 KIHFDFRLLHLDNSQGLGNVESRARAGRYEALSDLCEEYGIEDLLLAHHQNDQAETVLLQ 136 Query: 139 SQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G G++G+ D ++ + + RP L R+++ ++ + + W EDP Sbjct: 137 LLR-----GSGVAGLAGMPINRDMQRHNHRITLWRPLLNQSRQELEAYAKEHKLKWIEDP 191 Query: 193 SNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDL--------RVKVNNAVAMLIPK 240 SN D ++ R +R+ V I AL + Q L R+ +A A++ Sbjct: 192 SNQDTKYRRNALRKKVIPVLEKIQPEALVNIARSAQLLGEAQSLLNRLAQQDAKAIIYHD 251 Query: 241 YLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER------VMLF 293 L +IA++Q D+L ++ L ++L A+ + +R + + + + Sbjct: 252 QLKA--EPLIALAQKDLLAANNVLRYWLQTQQLAMPSQERLKAWWRDLGKKIKADTKLEW 309 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSD- 349 L +R C+ G + + W+ +A+ + +P + W Q N L D Sbjct: 310 LHDERRICLWRGMLQVGNLEEGRWVLKALPPNSKQLGFPAD---WVKHAQENNQISLRDR 366 Query: 350 ---SLIQIGPQSYRK--------ADVP 365 IQI P++ RK ADVP Sbjct: 367 RGSEKIQIKPKTPRKTLKNLFQEADVP 393 >gi|293977842|ref|YP_003543272.1| tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri DMIN] gi|292667773|gb|ADE35408.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein/tRNA(Ile)-lysidine synthetase, C-terminal domain protein [Candidatus Sulcia muelleri DMIN] Length = 436 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 24/207 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76 I V+VS G DSM LL L + + I V HC +++ KDE+ ++ + Sbjct: 22 IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + +I ++ K + AR+ RY I H DD +ET + Sbjct: 72 CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R KG+ G++ + I+ RP +++I S+ + NI W ED SN Sbjct: 132 INIIRGTGIKGLIGINNFKNKII--------RPLSFFSKKEIISYAQENNIKWREDNSNY 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK 222 D ++ R R+R F++ I + Y KK Sbjct: 184 DHKYLRNRIRFFLKPILDYKFYNGFKK 210 >gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Pichia pastoris CBS 7435] Length = 517 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V+ F L P + +++SGG DSM L L + + G ++ A++V+H R+ ++ Sbjct: 14 VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLI 122 E V + + L + H ++ K + L AR RY I ++ + + Sbjct: 71 EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM----GLSGMCDTILYDLN----LWISRPFLRCRR 174 H +DQ+ET +R +++ GM +S LY + + I RP L R+ Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTIFGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNIRK 190 Query: 175 EDIRSFLLQRNISWCEDPSNTD 196 +DI S+ + + W ED +NTD Sbjct: 191 KDIYSYCRELEVPWFEDHTNTD 212 >gi|237800161|ref|ZP_04588622.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023018|gb|EGI03075.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 445 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 8/178 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + RS AI V H L+ A + VC L + Sbjct: 30 VGFSGGLDSTVLLHLLAELA--RSENLPALHAIHVHHGLQAAADAWPEHCRQVCQALGVP 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 VS K +P + AAR+ARY +E +++ A DDQ ET+ R R Sbjct: 88 FEQVSVK-VEPGASVEQAARQARYKAFTEQLGA--GDVLLAAQHRDDQAETLLFRLMRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G L+ M D + RP L R ++ ++ Q ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRALGRGH-LVRPLLVVSRIELEAYAHQHGLNWIEDPSNNDQQFSR 199 >gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692] gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692] Length = 338 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 12/189 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+++AVSGG DS+ LL A + + D+ +G F A +DH LR + E + V +C +L Sbjct: 34 HVMLAVSGGVDSVALL-AWAAAMRDK-WGARLFCA-HLDHGLRPESSQERQRVHALCDQL 90 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I S + Q G+ A R RY + A ++TAH +D E Sbjct: 91 AIPCFSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLLTAHHANDLAEDSL 150 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G G + +D + RPFL + + + + + W ED SN D Sbjct: 151 MRFIR-----GTGWPALAGMAAWDPGRRLLRPFLLTPKHRLHALVQAAGLCWEEDSSNRD 205 Query: 197 DRFERVRVR 205 ++R R+R Sbjct: 206 PAYQRNRIR 214 >gi|225551664|ref|ZP_03772608.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1] gi|225371691|gb|EEH01117.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1] Length = 440 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GLSG+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI + D +N + + R RVR Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204 >gi|261338814|ref|ZP_05966672.1| hypothetical protein ENTCAN_05009 [Enterobacter cancerogenus ATCC 35316] gi|288318637|gb|EFC57575.1| tRNA(Ile)-lysidine synthetase [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 83/182 (45%), Gaps = 9/182 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LV SGG DS + LH ++ R ++ AI V H L A + V + +C+ Sbjct: 15 QLLVGFSGGLDST---VLLHRLMHWRDREPDVQIRAIHVHHGLSPYADEWVAHCDALCAA 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V G+ A AR+ARYA + K A ++TA DDQ ET + Sbjct: 72 WGIPLHVERVVLENEGLGIEAQARKARYAAFARALKPGEA--LVTAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G LS M + +D + RP L R + ++ Q +SW ED SN DD + Sbjct: 130 KRGSGPAG--LSAMPERTAFDGTE-LLRPLLGETRASLEAWAQQYQLSWIEDESNQDDSY 186 Query: 200 ER 201 +R Sbjct: 187 DR 188 >gi|296111610|ref|YP_003621992.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154] gi|295833142|gb|ADG41023.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154] Length = 435 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 13/175 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG DS+ LL AL L K V++ LRE + + +V + + + Sbjct: 18 VIVAVSGGVDSVVLLHALRQQLP-----TAKLVIAHVNYHLREESDADEVFVRRLAEKYQ 72 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +W + P + + AR+ RY + A + I+ AH DDQ ETV ++ R Sbjct: 73 AVFEMTTWSDI-PSNSVESKARQLRYLFFEKLAYQYHTETIVVAHHADDQAETVLLKLVR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + L+GM N I+RPFL ++++R + ++W +D +N D Sbjct: 132 --GGQVSQLAGMDSQ-----NSHITRPFLCITKQELRHYAQDNELTWRDDKTNAD 179 >gi|224824978|ref|ZP_03698084.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002] gi|224602649|gb|EEG08826.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002] Length = 447 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 13/216 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL L + +R +K SA+ V H L A + +C + Sbjct: 31 VGLSGGIDSVVLLDLLVRLCLERG---LKLSAVHVHHGLSPQADAWAEHCRQLCLEWGVP 87 Query: 84 --HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + S ++ L A AR+ RY + E +A++++ AH DDQ ETV ++ R Sbjct: 88 LRSEAVKVEVSGGES-LEAVARQHRYRVYGES----SASVVVLAHHQDDQAETVLLQLLR 142 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+ T+ W+ RP L R +I ++ R + W ED SN D R+ R Sbjct: 143 GAGPKGVA---AMPTLRRHAGRWLWRPLLAISRAEIEAYARWRQLVWVEDESNVDTRWRR 199 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +R + + A+ + Q V + +A A+L Sbjct: 200 NLLRHDILPLIESAIPHYRQHLQRAAVLMADASAVL 235 >gi|116871602|ref|YP_848383.1| hypothetical protein lwe0182 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740480|emb|CAK19600.1| conserved hypothetical/hypoxanthine phosphoribosyltransferase, fusion protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 648 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS LL H + S + K S ++HCLRE A+ E V C Sbjct: 24 LLVAVSGGPDSFALL---HFLWSSKLVPKESISVAHLNHCLREGAEKEQLVVQTFCEEHH 80 Query: 82 I---AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I +V K+++ Q G+ AR RY + + ++ AH DDQ+ET+ M Sbjct: 81 IPFFVEAVDIKKHAETIQKGIEETARIVRYKFFEKVMTENDINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + ++ + D SN Sbjct: 141 RLVR--GSSSIGWSGIQPKRKVTKGYAI-RPFLPITKAEIIQYASKHDLPYEIDESNVSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|260062776|ref|YP_003195856.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501] gi|88784344|gb|EAR15514.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501] Length = 439 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 20/193 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 L+A SGG DSM L + D ++F + LR E ++ + +V + +L Sbjct: 21 FLLACSGGLDSM----VLAHLCKD---AGLEFELAHCNFNLRGEASESDQEFVRETADKL 73 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETV 135 RI + S+ ++ + + AAR RY + + N I+TAH DD LET Sbjct: 74 RIKTHIKSFDTIGYANQNKVSIQMAARALRYEWFDQLTASENHLRYIVTAHHADDALETF 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL G+C N I RP L RED+ ++ I+W ED SN+ Sbjct: 134 LINLGR-----GSGLEGLCGIPARTAN--IRRPLLAFSREDLEAYAETARIAWREDASNS 186 Query: 196 DDRFERVRVRRFV 208 + R+ R R+R V Sbjct: 187 ETRYLRNRLRHEV 199 >gi|289626017|ref|ZP_06458971.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651466|ref|ZP_06482809.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868559|gb|EGH03268.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 445 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V N P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + +++T DDQ ET+ R R +G L+ M D + + RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q ++W EDPSN D RF R +R V Sbjct: 171 SRVELEGYAYQHGLNWVEDPSNDDSRFSRNFLRSDV 206 >gi|289422484|ref|ZP_06424327.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L] gi|289157056|gb|EFD05678.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L] Length = 462 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V +SGG DS+ LL LH + + I+ A+ ++H +R A + YVS +C +L Sbjct: 22 IIVGLSGGPDSVCLLHVLHRLSLKMN---IRVYAVHLNHQIRGLDAHLDALYVSKLCHKL 78 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 IA + S S+ GL AR RY + E I A I H +DQ ETV Sbjct: 79 GIACFIRSIDVPKYCSENGLGLEDGARNLRYMIFKEVKDRIGANKIAVGHNKNDQAETVI 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R K GLSGM D + D + RP L R DI S+ +++ D +N + Sbjct: 139 MRIMRGTGIK--GLSGM-DYVRSD---GVIRPILDLDRSDIESYCKDHSLTPRIDSTNLE 192 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 193 AIYSRNKIR 201 >gi|302690392|ref|XP_003034875.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8] gi|300108571|gb|EFI99972.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8] Length = 392 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 25/221 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI---SVDHCLRETAKDEVRYVSDVCS 78 ++VA SGG DS LL LH RS + + I SVDH L+ ++ + + + + Sbjct: 17 LVVANSGGPDSTCLLFLLHRWA--RSLPESQSHRILSWSVDHNLQPSSAQWMSHTARFAA 74 Query: 79 RLRIAH--SVVSWKNS----KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTF 128 RL I H + ++W + KP +G L AARE RYAL+ + ++ A + H Sbjct: 75 RLNIRHLSAQIAWGDGGFPPKPTSGGKGKLELAAREVRYALLYDALRSAGAEVAAFGHHA 134 Query: 129 DDQLETVYMRSQRDYAEKGM---------GLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 DDQ+ET +R+ + +E G+ G+ + L WI RP L ++ I + Sbjct: 135 DDQVETAILRALKGSSELGLAGMKSCRRFGMGARGELGHEGLRKWIVRPLLPVSKDRILA 194 Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219 + + + D +N R +R V + D+ ++++ Sbjct: 195 TCDEHKLEYVVDSTNFQPELTLRNAIRNAVEERDVGPVFIQ 235 >gi|295134680|ref|YP_003585356.1| PP-loop family protein [Zunongwangia profunda SM-A87] gi|294982695|gb|ADF53160.1| PP-loop family protein [Zunongwangia profunda SM-A87] Length = 437 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 23/196 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-----VRYVS 74 A +++AVSGG DSM L+ V K+ F+ + LR+ D VR Sbjct: 19 AKLILAVSGGVDSMVLMRLCKKV-------KLDFAIAHCNFNLRDNESDGDEEFVVRAAQ 71 Query: 75 DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ ++ I H + +S+ + + + AARE RY E NA I+ AH +D LE Sbjct: 72 NLELKVHIQHFNTISFA-EEHKLSIQMAARELRYHWFEELRIAENADYILVAHHANDSLE 130 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T + R +G+ G+ D IL RP L+ R++I ++ I W ED Sbjct: 131 TFLINFVRSTGPEGLAGIKAENDKIL--------RPLLKFSRQEIENYARDHQILWREDS 182 Query: 193 SNTDDRFERVRVRRFV 208 SN ++ R ++R V Sbjct: 183 SNASTKYLRNKIRHQV 198 >gi|117617562|ref|YP_855748.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558969|gb|ABK35917.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 446 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 16/201 (7%) Query: 12 FVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F ++L P +LVA SGG DS LL+ ++ + A+ V H L A + Sbjct: 9 FCQTLPAPEGSRGLLVAFSGGLDSTVLLVLAAQFAREQG---LVLRALHVHHGLSPNADE 65 Query: 69 EVRYVSDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 V + VC +L + V ++S L A AREARY ++ A+ ++TA Sbjct: 66 WVAHCETVCQQLAVPLLVERVQLQRDSG--DSLEAQAREARYLCLA--AQLGEGEWLLTA 121 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLET+ + +R +G L+GM + + L + RP L R ++ Sbjct: 122 HHQDDQLETLLLALKRGAGLRG--LAGMVPSQPFAGGL-LLRPLLEVSRTELADAAASLP 178 Query: 186 ISWCEDPSNTDDRFERVRVRR 206 W ED SN D+ ++R +R+ Sbjct: 179 YGWVEDESNQDESYDRNFLRQ 199 >gi|78043578|ref|YP_359085.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|77995693|gb|ABB14592.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 13/194 (6%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 ++ P ++V VSGG DSM LL L + F + V+H LR D + Sbjct: 16 QMINPGEKVVVGVSGGPDSMALLFCLLKYREEVDFS---LEVVHVNHGLRGRESDLDEEL 72 Query: 73 VSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V D + I V + K + L A AR+ RY E + A I AHT D Sbjct: 73 VLDFTRKYGINFHVKKLDDLKDLRENLQAVARQKRYEFFYEVLEKTGADKIALAHTASDV 132 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV M R G G G+C ++ + I RP R ++ SF+ ++NI + D Sbjct: 133 AETVMMNILR-----GAGTEGLCG--IWPVRDRIIRPLYTVFRREVMSFVERKNIPYRVD 185 Query: 192 PSNTDDRFERVRVR 205 SN ++ R +VR Sbjct: 186 SSNLVPKYLRNKVR 199 >gi|254786815|ref|YP_003074244.1| tRNA(Ile)-lysidine synthase domain containing protein [Teredinibacter turnerae T7901] gi|237683861|gb|ACR11125.1| tRNA(Ile)-lysidine synthase domain containing protein [Teredinibacter turnerae T7901] Length = 436 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS + LH G A+ V+H L A+ R+ D + L Sbjct: 20 VWIAFSGGLDST---VLLHQAAQ---LGLEHLQAVHVNHQLSPNAQAWQRHCEDTANSLG 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V + G+ AAR+ RY + SE K +++TAH +DQ ET+ R R Sbjct: 74 VPLTVRTVSVDDFGGGVEDAARKLRYQIFSELLKP--GEILLTAHHANDQAETLIYRLMR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G GL G+C + NL + RPFL R + ++ + W +D SN D Sbjct: 132 -----GAGLKGLC-GVPRSRNLGRRKTLVRPFLDVARPQLEAWADDHAVRWIKDESNDDT 185 Query: 198 RFERVRVRRFV 208 F+R +R V Sbjct: 186 SFDRNYIRHEV 196 >gi|294783791|ref|ZP_06749115.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA] gi|294480669|gb|EFG28446.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA] Length = 452 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K K + ++H LR E A + + D R Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QNFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K +TG L RE RY SE + A I TAH DDQ+ET Sbjct: 80 NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ L N I RP ++DI +L + I + D +N + Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYSN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|167648379|ref|YP_001686042.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31] gi|167350809|gb|ABZ73544.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31] Length = 455 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 18/190 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ LLI R+ G+ S ++VDH L + L Sbjct: 24 VGFSGGGDSLALLILARDWA--RAHGRAVLS-LTVDHQLNPDSAAWTAAAVARAQALGAQ 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ--- 140 ++W KP GL AAAR AR+AL+++ A+ A +++ HT DD E MR++ Sbjct: 81 ARALAWTGDKPSIGLPAAARAARHALLADAAREAGARVLLLGHTADDIAEAAAMRAEGST 140 Query: 141 ----RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 RD++ G +++ RP L R +IR +L R +W +DP+N D Sbjct: 141 VSDPRDWSPSPAWPEGR--------GVFVLRPLLEVGRGEIREWLSARGETWLDDPANDD 192 Query: 197 DRFERVRVRR 206 + R R R+ Sbjct: 193 LNYARARARQ 202 >gi|89898057|ref|YP_515167.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56] gi|123483693|sp|Q255L6|TILS_CHLFF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|89331429|dbj|BAE81022.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56] Length = 317 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 90/198 (45%), Gaps = 17/198 (8%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ LL L S + F A+ VD+ RE++ E Sbjct: 15 FFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFIAVHVDYGWRESSYREAE 67 Query: 72 YVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + C + + H ++ S+ Q AAR RYAL + + N + I AH Sbjct: 68 ELELRCQAEGVPIIVDHVPPEYRTSRDQEN---AARRYRYALFHKVCQKKNLSGIFLAHH 124 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ ETV R L GM + Y+ + I RP L + + L NI Sbjct: 125 ANDQAETVLKRVLE--GAHLSNLKGMRGEVYYE-GIPILRPLLHIPKIVLSRTLDAANIH 181 Query: 188 WCEDPSNTDDRFERVRVR 205 + D +NTD+R+ R R+R Sbjct: 182 YVHDITNTDERYLRARMR 199 >gi|303290410|ref|XP_003064492.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454090|gb|EEH51397.1| predicted protein [Micromonas pusilla CCMP1545] Length = 203 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 10/184 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ VSGG DS+ LL L LSD + + +H R +++E +V ++C RL Sbjct: 21 VVACVSGGPDSVALLHLLRE-LSDE--WNLAVHVLHCNHGKRSASEEEETFVVEMCERLG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + + ARE R A+ ++A +I+ AH +DDQ+ET+ ++ R Sbjct: 78 VDVHVRRPEAPWGSSHFQERAREWRRKEARALARDVDARVILQAHHWDDQVETILLKILR 137 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS + ++Y +N + RP L CR++++ +L R + D SN D F R Sbjct: 138 -----GCHLSNI-KGMMY-VNGDVGRPLLDCRKDELVRYLRARGVDSRVDESNDDATFSR 190 Query: 202 VRVR 205 ++R Sbjct: 191 NKIR 194 >gi|162455575|ref|YP_001617942.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56'] gi|161166157|emb|CAN97462.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56'] Length = 321 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 18/199 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG DS LL L L R G + A VDH LR A E+ D+ +L Sbjct: 21 VLCACSGGPDSTALLHVLS--LLRRRIGH-EVVAHGVDHGLRAAAAAELAIARDLSEQLG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + ++ + + P L A AR AR+A ++ A A I T HT DD+ ETV +R R Sbjct: 78 VPYAE-TRVDVAPGANLQARARAARFAALAAAAAAHGARAIATGHTADDRAETVLLRLLR 136 Query: 142 DYAEKGM-----------GLSGM-CDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187 +G+ G++G C + ++ + RP L+ RR D+ + L + ++ Sbjct: 137 GAGPRGLAVLPPRAPLPSGVAGAACGGVEPGSAASIELIRPLLQARRADVLAHLGRHRLA 196 Query: 188 WCEDPSNTDDRFERVRVRR 206 + EDPSN D RF RVRVRR Sbjct: 197 FAEDPSNRDPRFTRVRVRR 215 >gi|149907536|ref|ZP_01896283.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36] gi|149809206|gb|EDM69135.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36] Length = 474 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 13/195 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I++A SGG DS LL L + + + + A+ V H L + A + + + Sbjct: 25 PMQIVLAYSGGLDSHVLLHLL--ARYQQRYPQHAYLAVHVHHGLSDNADTWLDHCQQTAA 82 Query: 79 RLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I A VV N + L A AR ARY I++H + +L++ DDQLET Sbjct: 83 ALGINFIAEKVV--LNVGSRESLEAQARTARYQAIAKHLN--DGSLLLLGQHLDDQLETF 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ +R KG LS M + + L N I RP L ++ + + Q +SW ED S Sbjct: 139 LLQLKRGAGVKG--LSAMAAQMPFSLQANCQIVRPLLIHPQQALVDYASQAQLSWVEDES 196 Query: 194 NTDDRFERVRVRRFV 208 N + ++R +R + Sbjct: 197 NNNQSYDRNFLRHQI 211 >gi|332530123|ref|ZP_08406072.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624] gi|332040393|gb|EGI76770.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624] Length = 313 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG+DS LL+A ++R G+++ A+ V H L+ A V C L I Sbjct: 1 MACSGGADSTALLLAC----AERWPGQVQ--ALHVHHGLQAAADGFEAQVRATCEPLNI- 53 Query: 84 HSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +W+ P AAR ARYA ++E A + A DDQ+ET+ + Sbjct: 54 -PLHTWRVDARHAPGQSPEDAARGARYAALTEAALMAGVRDVALAQHADDQVETLLLALS 112 Query: 141 RDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNI----SWCEDPSN 194 R G GL G+ L RP L ++R +L R + W +DPSN Sbjct: 113 R-----GAGLPGLASMPQAWERGGLRWHRPLLDVPGAELRVWLEARGLRAGAGWVDDPSN 167 Query: 195 TDDRFERVRVR 205 D+R+ R R+R Sbjct: 168 ADERYTRNRIR 178 >gi|330950662|gb|EGH50922.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae Cit 7] Length = 394 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELAGRETLPAL--NAIHVHHGLQTAADAWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P L AAR+ARY +E + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPAASLEQAARQARYGAFTERLR--EGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRMQLEDYARRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRNQV 206 >gi|302871264|ref|YP_003839900.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574123|gb|ADL41914.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 456 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL ++ + + S + + ++H LR A D+ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLLDCMYRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E AK I+ I H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAKEISIDRIFLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G L G+ + + I+RP + RE+I F NI + D +N Sbjct: 140 NLFR-----GSSLEGLAS--IPPVRDIIARPLINISREEIEEFARVNNIPFVVDKTNYSL 192 Query: 198 RFERVRVR 205 +++R VR Sbjct: 193 KYKRNIVR 200 >gi|260592846|ref|ZP_05858304.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319] gi|260535216|gb|EEX17833.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319] Length = 461 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 21/192 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 AH LVA+SGG+DS+ LL+ + R G + A+ + LR E+ +DE Y +C Sbjct: 19 AHCLVALSGGADSVALLLTM------RQLG-YETDAVHCNFHLRGDESNRDE-EYCQSLC 70 Query: 78 SR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L IAH + + AARE RY + + + A I H +D +E Sbjct: 71 KQLNIPLHIAHFDTLTYAEAHKVSIEMAARELRYRYFFQLKEALGADAICVGHHQEDSVE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G GLSGM + I RP L R++I +L Q+ IS+ D + Sbjct: 131 TILINLVR-----GTGLSGMLG--IRPKKGDIVRPLLCVSRKEIEEYLHQQAISYVTDST 183 Query: 194 NTDDRFERVRVR 205 N D R ++R Sbjct: 184 NLVDDVVRNKLR 195 >gi|210613792|ref|ZP_03289906.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787] gi|210151001|gb|EEA82009.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787] Length = 476 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 17/193 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I+V VSGG+DS+ LL L + + F + + V+H LR + DE+ YV +C + Sbjct: 24 IIVGVSGGADSICLLFVLIQLQKEIPF---ELVCVHVNHGLRGIDADADEM-YVKKMCEK 79 Query: 80 ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V+ K + L A RE R + K T I AH +D ET Sbjct: 80 HCVPCEIYREDVALIAKKRKQSLEEAGREVRREAFVKTLKRYGGTKIALAHHQNDNAETF 139 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M R G GL G+ + +N + RP L R ++ +L + I++C D +N Sbjct: 140 LMNVAR-----GAGLKGLGG--IRPVNGNVIRPLLAVERGEVEKYLEEEGIAFCVDETNK 192 Query: 196 DDRFERVRVRRFV 208 D + R R+R + Sbjct: 193 SDAYMRNRIRNHI 205 >gi|253700218|ref|YP_003021407.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21] gi|251775068|gb|ACT17649.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21] Length = 457 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 32/197 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---------- 69 ++VAVSGG+DS+ LL L R + ++HCLR E+ DE Sbjct: 20 VVVAVSGGADSVALLD-----LMTRLECGLHLVVAHLNHCLRGAESDADEAFVASLAGNY 74 Query: 70 -VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + +VS C +A + + L A R ARY + + A A+ I AH Sbjct: 75 HLPFVSQSCDVADLAR--------RERLSLEDAGRRARYGFLEQTAAQFGASSIALAHHQ 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV +R R G GL+ M T L RP L+ R + +L QR +++ Sbjct: 127 DDQAETVLIRLLR--GSGGTGLAAMAGTSGERLK----RPLLQVSRAKLEQYLKQRGLTF 180 Query: 189 CEDPSNTDDRFERVRVR 205 D +N D R +R Sbjct: 181 RTDSTNADTAILRNSIR 197 >gi|261855736|ref|YP_003263019.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2] gi|261836205|gb|ACX95972.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2] Length = 444 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 19/202 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL P +++A SGG+DS+G L+ LH+ +I + +S+DH + D + + Sbjct: 9 SLPKPLKVVLASSGGADSLGALVWLHNQYQQGVIDEI--TVVSIDH---QIHPDSAEWSA 63 Query: 75 DVCSRLRI----AHSV---VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIM 123 C + +H + V + Q L + AR ARY + + + + +++ Sbjct: 64 RACQQASFFSIESHCIKIDVPTRGIHGQHSLESRARWARYEALRSWLYRRYQPEDEPVLV 123 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH +DQ+ET + + R GLS M + W RPFL+ R+D+R F Sbjct: 124 TAHHLEDQVETFLLAALR--GSGAAGLSAMPALTRFGAG-WHWRPFLQMPRDDLRQFAAS 180 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 + +DPSN D ++R +R Sbjct: 181 LPLIPVDDPSNQDLSYDRNYLR 202 >gi|289433574|ref|YP_003463446.1| hypothetical protein lse_0205 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169818|emb|CBH26356.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 648 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 10/191 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + K S ++H LRE A E V + C + + Sbjct: 24 LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHK 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR ARY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + +++ D SN+ Sbjct: 141 RLVR--GSSSIGWSGIQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197 Query: 198 RFERVRVRRFV 208 ++ R R R+ + Sbjct: 198 KYTRNRYRKEI 208 >gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121] gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121] Length = 434 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ LL +L + G + AI + H L + A R+ +C + + Sbjct: 27 IYLGLSGGVDSVALL----HLLVEAGLGH-RVKAIHIHHGLSQNADAWYRFCEALCQQYQ 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +A + + + AAR ARY + + + NA L++ AH DQ ET+ R R Sbjct: 82 VAFKGHKVELDTQKHSIEEAARIARYDIFASYLNK-NAYLLL-AHHAGDQAETLMFRLLR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G GL+GM + RP L + ++ ++ Q ++W ED SN D+ F R Sbjct: 140 --GTGGKGLAGMPAKRELGAGF-LYRPLLSFDKTNLIQYVKQNGLTWVEDESNQDEAFSR 196 Query: 202 VRVRR 206 +R Sbjct: 197 NHIRH 201 >gi|312134561|ref|YP_004001899.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL] gi|311774612|gb|ADQ04099.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL] Length = 456 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL ++ + + + + + ++H LR A ++ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLLDCMYRLKDEYN---LDITVAHLNHMLRPEADEDEKFVIEMCKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E AK I+ I+ H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAKEISIDRILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G L G+ T + D+ I+RP + RE+I F NI + D +N Sbjct: 140 NLFR-----GSSLKGLASTPPVRDI---IARPLINISREEIEEFARVNNIPFVVDKTNYS 191 Query: 197 DRFERVRVR 205 +++R VR Sbjct: 192 LKYKRNIVR 200 >gi|331087219|ref|ZP_08336289.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408905|gb|EGG88366.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 505 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 19/208 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 I+ R F R ++ +SGG+DS+ L LH + + +K A+ V+H +R E Sbjct: 26 IQEHRMFERGET----VITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIRGE 78 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 A + R+V ++C I +V K + + A R R A+ A Sbjct: 79 DADADERFVQNICKTAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYGAA 138 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +D ET+ M R G GL+GM T + + RP L R +I F Sbjct: 139 KIALAHHKNDNAETLLMNLVR-----GTGLNGM--TGIKPVRDRYVRPLLCLERREIEGF 191 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 L Q I + D +N + + R ++R V Sbjct: 192 LEQNGIRYQTDQTNLTEDYTRNKIRNRV 219 >gi|284051178|ref|ZP_06381388.1| tRNA(Ile)-lysidine synthetase [Arthrospira platensis str. Paraca] Length = 348 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L+ L + GK + +++ HC + +D V +D L Sbjct: 34 LLVAVSGGQDSMCLIRLLLDLQ-----GKWNWR-MAIAHCDHQWRRDSVAN-ADYIEELG 86 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V ++ + PQ AAARE RY ++ E A+T N ++T HT D+ ET+ Sbjct: 87 KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 146 Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G G G+ + + + RP L R++ F QR++ ED Sbjct: 147 R-----GSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEFCQQRDLQIWEDS 201 Query: 193 SNTDDRFERVRVR 205 +NTD + R R+R Sbjct: 202 TNTDVSYARNRIR 214 >gi|300704459|ref|YP_003746062.1| tRNA(ile)-lysidine synthase [Ralstonia solanacearum CFBP2957] gi|299072123|emb|CBJ43455.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CFBP2957] Length = 462 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 19/216 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 + + FV S P + VA+SGG DS LL A + D + ++ A+ V H L+ Sbjct: 11 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAT-AAWRDAAGAPVRLVALHVHHGLQAD 68 Query: 64 ----ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 E A + DV +R H V G+ AAREARYA + A Sbjct: 69 ADAWEAACVRMAAAVDVECHVRRVHVSV-----DAGRGVEEAAREARYAALDALCAETGA 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIR 178 TL++TAH DDQ ETV ++ R G GL G+ + L + RP+L R DI Sbjct: 124 TLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERLGGATLLRPWLDVPRSDIE 178 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 +++ ++W +DPSN D R+ R +R + + H Sbjct: 179 AYVRTHALAWVDDPSNDDARYARNALRPLLAGMAGH 214 >gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101] gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101] Length = 436 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 27/194 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 + +AVSGG DSM LL F ++ + I+V HC LR E+ D+ ++ + Sbjct: 21 LFLAVSGGLDSMVLL---------HLFKQLNYE-ITVLHCNFQLRGLESFGDQ-EFIQNY 69 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I + + + AARE RY+ E + + ++TAH DD L Sbjct: 70 CDKNNIKIFTTQFDTQAFAEDYKLSIQVAARELRYSWFYELLEEKHFDYLLTAHHADDNL 129 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + R G GL G+ T + + N I RP L RE+I + + NI W ED Sbjct: 130 ETFIINLTR-----GTGLDGL--TGIPEQNDKIIRPLLPFSREEILKYAQENNIEWREDS 182 Query: 193 SNTDDRFERVRVRR 206 SN ++ R ++R Sbjct: 183 SNASTKYVRNKIRH 196 >gi|291565670|dbj|BAI87942.1| tRNA(Ile)-lysidine synthase [Arthrospira platensis NIES-39] Length = 345 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L+ L + GK + +++ HC + +D V +D L Sbjct: 31 LLVAVSGGQDSMCLIRLLLDLQ-----GKWNWR-MAIAHCDHQWRRDSVAN-ADYIEELG 83 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V ++ + PQ AAARE RY ++ E A+T N ++T HT D+ ET+ Sbjct: 84 KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 143 Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G G G+ + + + RP L R++ F QR++ ED Sbjct: 144 R-----GSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEFCQQRDLQIWEDS 198 Query: 193 SNTDDRFERVRVR 205 +NTD + R R+R Sbjct: 199 TNTDVSYARNRIR 211 >gi|317968353|ref|ZP_07969743.1| MesJ-like protein [Synechococcus sp. CB0205] Length = 327 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 23/203 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM L+ L+ + + +H R A+ + R + Sbjct: 29 LLLAVSGGQDSMALVGLLNDL---KRLHHWPLQLWHGNHGWRPEAEQQARELQAWAQDQG 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W++ K A+AR+ RY + HA+ + ++T HT D+ ETV ++ R Sbjct: 86 LPIQVDDWESPKRDE---ASARDWRYGQLQTHAQRLGCRRVVTGHTASDRSETVLLQLAR 142 Query: 142 DYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +G+ LSG + + RP L R D Q + DPSN Sbjct: 143 GSHRRGLSSLRQRRTLSGTIELV---------RPLLGFSRSDTVQLCEQLGLPIWLDPSN 193 Query: 195 TDDRFERVRVRRFVRDIDLHALY 217 +D RF R R+R V + L AL+ Sbjct: 194 SDPRFSRNRIRHEVLPV-LEALH 215 >gi|237739225|ref|ZP_04569706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 2_1_31] gi|229422833|gb|EEO37880.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 2_1_31] Length = 452 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + F K K + ++H LR E A + + D R Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QDFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K +TG L RE RY SE + A I TAH DDQ+ET Sbjct: 80 NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYDKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ L N I RP ++DI +L + I + D +N + Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|148549375|ref|YP_001269477.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1] gi|148513433|gb|ABQ80293.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1] Length = 427 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 83/193 (43%), Gaps = 24/193 (12%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS----R 79 VA SGG DS LL L R+ AI + H L+ A + +C Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L++ H VS P L AAREARYA + ++ T DDQ ET+ R Sbjct: 73 LQVIHVQVS-----PGASLEQAAREARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRL 125 Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G GL G+ L +L RP L C R+ ++ + + ++W EDPSN Sbjct: 126 LR-----GAGLRGLAAMPGQRALGQGSL--VRPLLACSRQHLQDYAQAQGLTWIEDPSNV 178 Query: 196 DDRFERVRVRRFV 208 D +F R +R V Sbjct: 179 DTQFARNYLRGEV 191 >gi|330894611|gb|EGH27272.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. mori str. 301020] Length = 445 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V N P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + +++T DDQ ET+ R R +G L+ M D + + RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q ++W EDPSN D RF R +R V Sbjct: 171 SRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206 >gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like [Moorella thermoacetica ATCC 39073] gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica ATCC 39073] Length = 455 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 14/194 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 LV ++V VSGG DS+ LL HS+++ + ++H LR A + YV D Sbjct: 15 LVPGDKVVVGVSGGPDSLALL---HSLMTLQEEYGYTLQVAHLNHGLRPEAAADAEYVRD 71 Query: 76 VCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +A V + + AAARE RY E A + AT I H +DQ Sbjct: 72 LATGWGLPVTVAQRDVLAYRQEHHLSIEAAAREVRYNFFQEVAAAVGATRIAVGHQAEDQ 131 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R G GL+G+ + L RP L R +I ++ + D Sbjct: 132 AETVLLNLLR-----GSGLTGLKAMLPRRGRL--IRPLLFVTRAEIEAYCRDNGLHPRRD 184 Query: 192 PSNTDDRFERVRVR 205 +N D + R ++R Sbjct: 185 FTNEDPAYRRNKIR 198 >gi|56477787|ref|YP_159376.1| ATPase [Aromatoleum aromaticum EbN1] gi|61216414|sp|Q5P2I9|TILS_AZOSE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56313830|emb|CAI08475.1| tRNA(Ile)-lysidine synthetase [Aromatoleum aromaticum EbN1] Length = 423 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 80/189 (42%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG+DS LL H + R A V H L A + + + C+ L Sbjct: 13 LCVAFSGGADSTTLL---HLLARLRPRFGFDLCAAHVHHALSPNADAWLDFCARQCAALD 69 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A H GL AAARE R+A +S + ++ H DDQ ET+ R Sbjct: 70 VAFHPFREQVARDHPAGLEAAAREVRHAALSR----VTCDWLVFGHHQDDQAETLLFRLL 125 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G G+ G + RP L RR DIR+F ++ W ED SN D R Sbjct: 126 R-----GAGVRGAAAMAAIEPGFPGRLRPLLGVRRADIRAFAQAASLEWIEDESNADPRH 180 Query: 200 ERVRVRRFV 208 R +R V Sbjct: 181 ARNFLRHHV 189 >gi|325106138|ref|YP_004275792.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145] gi|324974986|gb|ADY53970.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145] Length = 449 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 IL+A SGG DSM ++ H + ++ HC LR E+ +DE+ +V + Sbjct: 24 ILLATSGGRDSMAMVYLFH----------LSGFKTAIAHCNFNLRGEESVRDEI-FVKNT 72 Query: 77 CSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L IAH + + + + AAR+ RY + I AH +D + Sbjct: 73 ALKLNTPIHIAHFDTTNYAEEHKISIQMAARDLRYDFFEDLCAEFKYQKIAVAHHHNDSI 132 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R G G++G+ I + N I RP L RE+I F+ ++ I + ED Sbjct: 133 ETVLLNLIR-----GTGIAGL-HGIKHSKNTII-RPLLCFTREEIDQFVSEQKIDFVEDS 185 Query: 193 SNTDDRFERVRVR 205 SN D++ R ++R Sbjct: 186 SNASDKYARNKIR 198 >gi|161833732|ref|YP_001597928.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri GWSS] gi|152206222|gb|ABS30532.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri GWSS] Length = 436 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 22/206 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76 I V+VS G DSM LL L + + I V HC +++ KDE+ ++ + Sbjct: 22 IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + +I ++ K + AR+ RY I H DD +ET + Sbjct: 72 CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+ + + I RP +++I S+ + NI W ED SN D Sbjct: 132 INLIR-----GTGIKGLIG--INNFKKKIIRPLSFFSKKEIISYAQENNIKWREDNSNYD 184 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK 222 ++ R R+R F++ I + Y KK Sbjct: 185 HKYLRNRIRFFLKPILDYKFYNGFKK 210 >gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3] gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3] Length = 480 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 17/202 (8%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71 +++ P +LV VSGG DS+ LL AL + + + ++ S V H LR D + Sbjct: 24 HAMIAPGEAVLVGVSGGPDSVALLHALVRLQPELAVARV--SVAHVHHGLRGAEADADQA 81 Query: 72 YVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V+ + RL + V+ + AAR ARY S+ A I TAH Sbjct: 82 FVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYHKIATAHH 141 Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 D E V M R +G+ G+ + + I+ RP + REDI +FL + Sbjct: 142 AGDNAEWVLMNLVRGAGPEGLSGIPPVRENII--------RPLIHVSREDILAFLTHGGM 193 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 + ED +N D F R RVR + Sbjct: 194 DYVEDSTNADLTFTRNRVRHHL 215 >gi|88812394|ref|ZP_01127644.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231] gi|88790401|gb|EAR21518.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231] Length = 446 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS + LH+ ++ + SA+ VDH L + D + C L Sbjct: 22 LWIAYSGGCDST---VLLHAAVTS----GLPVSALHVDHGLHPESGDWALHCRARCQALG 74 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V GL AAAR+ARY + A I TAH DDQ ETV +R R Sbjct: 75 VPLRVEPVTVRDGGEGLEAAARKARYQAYA--AILAPGECIATAHHVDDQAETVLLRILR 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 G G+ G+ I + L + RP L R ++ ++ + +SW +DP+N DR Sbjct: 133 -----GTGIDGLAG-IPAERELGEGRLIRPLLGFCRAELVAYATRHELSWIDDPANRCDR 186 Query: 199 FERVRVRRFV 208 +R +R V Sbjct: 187 HDRSFLREHV 196 >gi|15642240|ref|NP_231873.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153820829|ref|ZP_01973496.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229512122|ref|ZP_04401601.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229519257|ref|ZP_04408700.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9] gi|229607187|ref|YP_002877835.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236] gi|254849373|ref|ZP_05238723.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10] gi|255747060|ref|ZP_05421005.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101] gi|262161395|ref|ZP_06030505.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1] gi|61217424|sp|Q9KPX0|TILS_VIBCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9656802|gb|AAF95386.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126521621|gb|EAZ78844.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229343946|gb|EEO08921.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9] gi|229352087|gb|EEO17028.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229369842|gb|ACQ60265.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236] gi|254845078|gb|EET23492.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10] gi|255735462|gb|EET90862.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101] gi|262028706|gb|EEY47360.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1] Length = 440 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 +Y C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQYCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|330964160|gb|EGH64420.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 441 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + AI V H L+ A + VC L +A Sbjct: 26 VGFSGGLDSTVLLHLLAELARRESLPALH--AIHVHHGLQAAADAWPEHCRQVCQALDVA 83 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V K +P L AAR+ARY ++ + +++T DDQ ET+ R R Sbjct: 84 FELVRVK-VEPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G L+ M + ++RP L R ++ S+ Q+ + W EDPSN + +F R Sbjct: 141 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARQQGLRWVEDPSNDNQQFSR 195 >gi|225024422|ref|ZP_03713614.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC 23834] gi|224942803|gb|EEG24012.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC 23834] Length = 407 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ + LH + S R+ ++ SA+ V H L A + ++C++ ++ Sbjct: 3 VGFSGGLDSV---VLLHLLCSLRNELPLELSAVHVHHGLDAPADQWAEFCHELCAQWQVP 59 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + + GL AAAR RY ++ +A + AH DDQ ET+ + + R Sbjct: 60 LRIERVQVEFGRLGLEAAARAKRYRCFAQ----SHADAVALAHHADDQAETLLLAALRGG 115 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + + + ++LW RP L R ++ ++ + ++W ED SN D R Sbjct: 116 GLRALSAMPALRALNERISLW--RPLLAVSRTELLAYAQEHKLTWVEDSSNADTTLLRNW 173 Query: 204 VRR 206 +RR Sbjct: 174 LRR 176 >gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052] gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052] Length = 468 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 15/197 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 +L+ P IL+A+SGG DS+ LL L + R I +A ++H LR E A ++ RY Sbjct: 13 NLIKPNDKILIALSGGPDSICLLNVLFEL---REKLNISIAAAHLNHLLRGEDAFEDERY 69 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + C+ + I V ++ + + + A R ARY E + I TAH Sbjct: 70 VINTCNDMGIKCFVKRVDINAYSKESKLSSEMAGRNARYDFFDEILEKEGFNKIATAHNA 129 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +DQ ETV R R G GL G+ I + I RP L RE++ +++ +N++ Sbjct: 130 NDQAETVLFRLMR-----GTGLEGL-GGIRASRDDKIIRPILCLSREEVENYVKLKNLNP 183 Query: 189 CEDPSNTDDRFERVRVR 205 D +N + + R ++R Sbjct: 184 RIDKTNFEKIYNRNKIR 200 >gi|185178872|ref|ZP_02964645.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024358|ref|ZP_02997027.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518716|ref|ZP_03004137.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524149|ref|ZP_03004218.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|225550464|ref|ZP_03771413.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551442|ref|ZP_03772388.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209509|gb|EDU06552.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018624|gb|EDU56664.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997679|gb|EDU66776.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659937|gb|EDX53317.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|225379257|gb|EEH01622.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379618|gb|EEH01980.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 326 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 22/202 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L +S V++ RE+A + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ A AR RY E K N + AH FDD LET YM Sbjct: 69 PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + ++ + RP L R++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALY 217 D +ER RVR+ + + L+ +Y Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204 >gi|62185345|ref|YP_220130.1| hypothetical protein CAB732 [Chlamydophila abortus S26/3] gi|81312504|sp|Q5L5B2|TILS_CHLAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62148412|emb|CAH64179.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 317 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 19/199 (9%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F +L L+A+SGGSDS+ LL L S + F+A+ VD+ RE++ E Sbjct: 15 FFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAE 67 Query: 72 YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C L + H + SK P+ AR RYAL + + N I AH Sbjct: 68 ELKLRCQEEGVPLIVDHVPSKYTTSKDPEN----TARRYRYALFCKICREDNLAGIFLAH 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQ ETV R A G L GM Y+ + + RP L ++ + L NI Sbjct: 124 HANDQAETVLKRVLEG-ASLG-NLKGMTSGASYN-RIPLLRPLLHIPKQVLMQTLDAENI 180 Query: 187 SWCEDPSNTDDRFERVRVR 205 ++ D +NTD+R+ R R+R Sbjct: 181 AYVHDVTNTDERYLRARMR 199 >gi|323143578|ref|ZP_08078255.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066] gi|322416641|gb|EFY07298.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066] Length = 449 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 24/196 (12%) Query: 19 PAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVS 74 PA I V +SGG+DS + LL+A +D +FS ++ HC+ D+ +++ Sbjct: 23 PAPITVGLSGGADSTLALLVACKLQETDP-----RFSVLAC-HCIHGLDADDPIWLKHCQ 76 Query: 75 DVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D+C RL++ ++V P+ A+R+ RY + E+ + N L M H D Sbjct: 77 DLCQRLKVKLVTPKLNIVYGNGVSPED----ASRKERYRALLENL-SPNGYL-MLGHQSD 130 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+E + + +R +G+G GM T+ D I RP L ++DI + L W Sbjct: 131 DQVENLLLALKRGSGPRGLG--GM-STVTCDNRGTIIRPLLDLSKKDIENILTALGFDWV 187 Query: 190 EDPSNTDDRFERVRVR 205 D SNT +FER +R Sbjct: 188 FDISNTYLKFERNFIR 203 >gi|237743038|ref|ZP_04573519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 7_1] gi|229433598|gb|EEO43810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 7_1] Length = 448 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE K I A I TAH DDQ+ET Sbjct: 80 NLEIFIKKIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKIGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ + + N I RP ++DI ++L + I + D +N + Sbjct: 140 FRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILNYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NDFTRNSIR 201 >gi|209528292|ref|ZP_03276753.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328] gi|209491278|gb|EDZ91672.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328] Length = 344 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L+ L + ++ I++ HC + +D V +D +L Sbjct: 30 LLVAVSGGQDSMCLIRLLLDLQEKWNW------RIAIAHCDHQWRRDSVAN-ADYIEQLG 82 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V ++ + PQ AAARE RY ++ E A+T N ++T HT D+ ET+ Sbjct: 83 KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 142 Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G G G+ + + + RP L R++ F QR++ ED Sbjct: 143 R-----GSGADGLSSLVWSRPIFGRETETKPILVRPLLEITRKETGEFCQQRDLPIWEDS 197 Query: 193 SNTDDRFERVRVR 205 +NTD + R R+R Sbjct: 198 TNTDVSYARNRIR 210 >gi|166154184|ref|YP_001654302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu] gi|166155059|ref|YP_001653314.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335429|ref|ZP_07223673.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2tet1] gi|259533695|sp|B0B969|TILS_CHLT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|259533707|sp|B0BAU8|TILS_CHLTB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|165930172|emb|CAP03656.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu] gi|165931047|emb|CAP06610.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 321 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ET+ +R + +G L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183 Query: 189 CEDPSNTDDRFERVRVR 205 +D +N ++RF R R+R Sbjct: 184 VQDITNCNERFLRARMR 200 >gi|306815213|ref|ZP_07449362.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101] gi|305850875|gb|EFM51330.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101] Length = 421 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 9/179 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +A SGG DS + LH ++ R+ + AI V H L A V++ ++C + ++ Sbjct: 1 MAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKHCENICQQWQV 57 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 58 PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + I RP L R ++ + L + W ED SN DD ++R Sbjct: 116 SGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDESNQDDSYDR 171 >gi|195867457|ref|ZP_03079461.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209554128|ref|YP_002284496.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|195660933|gb|EDX54186.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209541629|gb|ACI59858.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 326 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 22/202 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L +S V++ RE+A + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ A AR RY E K N + AH FDD LET YM Sbjct: 69 PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + ++ + RP L R++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALY 217 D +ER RVR+ + + L+ +Y Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204 >gi|188588191|ref|YP_001919610.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska E43] gi|188498472|gb|ACD51608.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska E43] Length = 468 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 25/255 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVA+SGG DS+ LL L + R I+ A ++H LR E A + +V C + Sbjct: 21 ILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVISTCKEM 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V ++ + + + A R RY E K I TAH +DQ ET+ Sbjct: 78 NIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQAETII 137 Query: 137 MRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R +G+G +C D I+ RP L R+++ ++ ++N++ D +N Sbjct: 138 FRLMRGTGLEGLGGIKVCREDKII--------RPILCLTRKEVEKYIKEKNLNPRIDKTN 189 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 FE++ R +R L + F + VK N +++LI K R I Sbjct: 190 ----FEKIYNRNKIR---LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKAYN 242 Query: 255 DILNIDSTLLFYLLR 269 + ++ FY+L+ Sbjct: 243 EYCKKNTDSKFYILK 257 >gi|332283467|ref|YP_004415378.1| cell cycle protein MesJ [Pusillimonas sp. T7-7] gi|330427420|gb|AEC18754.1| cell cycle protein MesJ [Pusillimonas sp. T7-7] Length = 342 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG+DS ++A+H+ L R G ++ V H L+ A +V D+ L+ Sbjct: 33 IGIGLSGGADSA--MLAVHAALYGRRTG-VELHCFHVHHGLQAPADGWQTHVHDLAQMLQ 89 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I+ H+ + G+ +AAR+ RY + E A N I+ AH +DQ ETV +R Sbjct: 90 ISCHTRFVQVDVSGGDGMESAARDMRYDALQELAVQANLHHILLAHHQNDQAETVLLRLL 149 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI--RSFLLQRNISW--CEDPSNTD 196 R +GL+ M ++ L RP+L R I ++ L W DPSN D Sbjct: 150 RGAGP--IGLAAMA-PVMQRQGLSYVRPWLEVDRALILQQAELFASLTGWVPVSDPSNAD 206 Query: 197 DRFERVRVR 205 D++ R +R Sbjct: 207 DQYTRAALR 215 >gi|251779290|ref|ZP_04822210.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083605|gb|EES49495.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 468 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 25/255 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVA+SGG DS+ LL L + R I+ A ++H LR E A + +V C + Sbjct: 21 ILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVISTCKEM 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V ++ + + + A R RY E K I TAH +DQ ET+ Sbjct: 78 NIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQAETII 137 Query: 137 MRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R +G+G +C D I+ RP L R+++ ++ ++N++ D +N Sbjct: 138 FRLMRGTGLEGLGGIKVCREDKII--------RPILCLTRKEVEKYIKEKNLNPRIDKTN 189 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 FE++ R +R L + F + VK N +++LI K R I Sbjct: 190 ----FEKIYNRNKIR---LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKAYN 242 Query: 255 DILNIDSTLLFYLLR 269 + ++ FY+L+ Sbjct: 243 EYCKKNTDSKFYILK 257 >gi|76789585|ref|YP_328671.1| TilS [Chlamydia trachomatis A/HAR-13] gi|237803272|ref|YP_002888466.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT] gi|237805193|ref|YP_002889347.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311681|ref|ZP_05354251.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276] gi|255317982|ref|ZP_05359228.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276s] gi|255349245|ref|ZP_05381252.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70] gi|255503782|ref|ZP_05382172.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70s] gi|255507463|ref|ZP_05383102.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis D(s)2923] gi|123606544|sp|Q3KKJ9|TILS_CHLTA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|76168115|gb|AAX51123.1| TilS [Chlamydia trachomatis A/HAR-13] gi|231273493|emb|CAX10409.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274506|emb|CAX11302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT] gi|289525886|emb|CBJ15368.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis Sweden2] gi|296435472|gb|ADH17650.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/150] gi|296436396|gb|ADH18570.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9768] gi|296438255|gb|ADH20416.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/11074] gi|296439189|gb|ADH21342.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/11023] gi|297140756|gb|ADH97514.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9301] Length = 321 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ET+ +R + +G L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183 Query: 189 CEDPSNTDDRFERVRVR 205 +D +N ++RF R R+R Sbjct: 184 VQDITNCNERFLRARMR 200 >gi|325663698|ref|ZP_08152102.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470191|gb|EGC73424.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium 4_1_37FAA] Length = 367 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 19/208 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 I+ R F R ++ +SGG+DS+ L LH + + +K A+ V+H +R E Sbjct: 26 IQEHRMFERGET----VITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIRGE 78 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 A + R+V ++C L I + K + + A R R A+ A Sbjct: 79 DADADERFVQNICETAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYGAA 138 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +D ET+ M R G GL+GM T + + RP L R +I F Sbjct: 139 KIALAHHKNDNAETLLMNLVR-----GTGLNGM--TGIKPVRDRYVRPLLCLERREIEGF 191 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 L Q I + D +N + + R ++R V Sbjct: 192 LEQNGIRYQTDQTNLTEDYTRNKIRNRV 219 >gi|21674432|ref|NP_662497.1| MesJ protein [Chlorobium tepidum TLS] gi|61216669|sp|Q8KC15|TILS_CHLTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21647616|gb|AAM72839.1| tRNA(Ile)-lysidine synthetase [Chlorobium tepidum TLS] Length = 331 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 67/349 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 +L+AVSGG DSM LL SV S + + V HC LR A D + +V D C Sbjct: 24 VLLAVSGGPDSMALLHLFASVAS------VLHCRLGVAHCNFMLRGDASDADESFVRDAC 77 Query: 78 SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + L I V +WK S +T AR RY E + + T I T H Sbjct: 78 AELGIDFHVRRFDTASVSSAWKKSIEET-----ARLLRYDFFGELCREASYTRIATGHHS 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ETV R G G+SG+ + + I RP L R +I ++L ++ + W Sbjct: 133 DDNAETVLFNLFR-----GAGISGLRGIRVR--HGAIIRPLLPFTRREIVAYLEEKRVVW 185 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +D +N ++ R F+R N + ++ ++ M S Sbjct: 186 RDDHTNEGIEYD----RNFIR---------------------NRVIPVIEERFAHKLMPS 220 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA-----ICGGQISLPGYRSM---ERVMLFLKSGKRG 300 + IS+ ++ + ++ R+ A + GG++ + R + ER + ++ K Sbjct: 221 LQRISEHAGELEEFIDLHISRLLEAHPGLDLAGGKLHVGTMRQLSMFERKEILKRALKLQ 280 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 +S+G V++R A L +A R++P E + DG +F+ + Sbjct: 281 GLSVGSNVLNRIAGLL-DNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 326 >gi|319955124|ref|YP_004166391.1| tRNA(ile)-lysidine synthase [Cellulophaga algicola DSM 14237] gi|319423784|gb|ADV50893.1| tRNA(Ile)-lysidine synthase [Cellulophaga algicola DSM 14237] Length = 435 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 21/192 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78 H L+A SGG DS+ +L+ L + ++FS + LR E+ DE +V + + Sbjct: 20 HFLLACSGGIDSV-ILVHLCKAIG------LEFSLAHCNFNLRGLESDADEA-FVKLLAA 71 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I V S+ ++ + L AARE RYA SE ++TAH DD LET Sbjct: 72 DFKIPFYVTSFDTAQYMNTHKVSLQIAARELRYAWFSELQSKHKIPTLVTAHHADDSLET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G G+ G+ T + + I+RP L RE I + + ISW ED SN Sbjct: 132 FLINLSR-----GTGIDGL--TGIPERTPTIARPLLLFSREQILDYAHRFTISWREDKSN 184 Query: 195 TDDRFERVRVRR 206 + ++ R ++R Sbjct: 185 QETKYLRNKIRH 196 >gi|313675080|ref|YP_004053076.1| tRNA(ile)-lysidine synthetase [Marivirga tractuosa DSM 4126] gi|312941778|gb|ADR20968.1| tRNA(Ile)-lysidine synthetase [Marivirga tractuosa DSM 4126] Length = 438 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 19/208 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I+ F R H+L+A+SGG DS+ L L L+D FS ++ Sbjct: 6 FLDYIKKESLFNRH----EHLLLAISGGLDSVVLAHLLK--LTD-----FHFSMAHMNFQ 54 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR E + + ++V ++ +L + V + K + AR+ RY K + + Sbjct: 55 LRDEDSNRDEKFVRELAKKLEVEVFVKRVEIDKEKGSTQLQARDLRYDWFRRLMKDHHFS 114 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH +D LET + R G G+ G+ + N I+RP L +E I+ + Sbjct: 115 KLLTAHHANDLLETTLLNLIR-----GTGIKGLRSILPLHHN--IARPLLFASKEQIKEY 167 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +I W ED SN ++++R ++R V Sbjct: 168 AEENSIEWREDVSNASEKYKRNKMRHRV 195 >gi|223936702|ref|ZP_03628612.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514] gi|223894553|gb|EEF61004.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514] Length = 457 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 16/207 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE+ + F R ILV VSGG DSM LL L + S + + ++H LR Sbjct: 16 IEARQLFGRG----ERILVGVSGGLDSMVLLEVLSELASKHDW---TLAVAHLNHSLRGR 68 Query: 66 AKD-EVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + D + R V RL + + V K L AAR R+ ++ A+ + Sbjct: 69 SSDADERLVRRTAERLGCQCVVERAEVRKFGRKAGLSLEMAARRLRHEFLARSARKLGIK 128 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIR 178 ++ AH DDQ+E +R R + + GL+GM + D L + RP L R+ ++ Sbjct: 129 VVALAHHADDQVELFLLRLLRGASSE--GLAGMDWKVASPVDKGLGLVRPLLEVRKSELE 186 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 F Q + + +D +N R RVR Sbjct: 187 GFAQQEGVKFRKDATNESQEILRNRVR 213 >gi|13899157|gb|AAG12421.1| MesJ [Chlorobaculum tepidum] Length = 351 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 67/349 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 +L+AVSGG DSM LL SV S + + V HC LR A D + +V D C Sbjct: 44 VLLAVSGGPDSMALLHLFASVAS------VLHCRLGVAHCNFMLRGDASDADESFVRDAC 97 Query: 78 SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + L I V +WK S +T AR RY E + + T I T H Sbjct: 98 AELGIDFHVRRFDTASVSSAWKKSIEET-----ARLLRYDFFGELCREASYTRIATGHHS 152 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ETV R G G+SG+ + + I RP L R +I ++L ++ + W Sbjct: 153 DDNAETVLFNLFR-----GAGISGLRGIRVR--HGAIIRPLLPFTRREIVAYLEEKRVVW 205 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +D +N ++ R F+R N + ++ ++ M S Sbjct: 206 RDDHTNEGIEYD----RNFIR---------------------NRVIPVIEERFAHKLMPS 240 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA-----ICGGQISLPGYRSM---ERVMLFLKSGKRG 300 + IS+ ++ + ++ R+ A + GG++ + R + ER + ++ K Sbjct: 241 LQRISEHAGELEEFIDLHISRLLEAHPGLDLAGGKLHVGTMRQLSMFERKEILKRALKLQ 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 +S+G V++R A L +A R++P E + DG +F+ + Sbjct: 301 GLSVGSNVLNRIAGLL-DNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 346 >gi|171920688|ref|ZP_02931912.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903424|gb|EDT49713.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 326 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L +S V++ RE+A + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ A AR RY E K N + AH FDD LET YM Sbjct: 69 PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + ++ + RP L R++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNFVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALY 217 D +ER RVR+ + + L+ +Y Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204 >gi|308185759|ref|YP_003929890.1| cell cycle protein [Pantoea vagans C9-1] gi|308056269|gb|ADO08441.1| cell cycle protein [Pantoea vagans C9-1] Length = 466 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 24/286 (8%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L+ P A ++VA SGG DS + LH +L + + A+ V H L A + Sbjct: 36 ALLQPDAALVVAFSGGLDST---VLLHQLLGWQQQHPQSHLRALHVHHGLSPNADAWAAH 92 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V+ + G+ AAAR ARY +S K +++TA DDQ Sbjct: 93 CQTICEQWQLRCDVLRVTVDGRENGIEAAARTARYQALSAALKP--GEILLTAQHLDDQC 150 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G L+ M + + + + RP L R+ + ++ + W +D Sbjct: 151 ETFLLALKRGSGPAG--LAAMPSSRMLGTHQ-LVRPLLNQSRQSLEAYADVHQLVWIDDE 207 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSI 249 SN D R++ R F+R L LY + F + + + + L+ + L + + Sbjct: 208 SNQDLRYD----RNFLRQRLLPELYQRWPHFAEATARSAALCSEQEQLLDELLAGQLAEL 263 Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 I ++N+ + LLR A GG ++P +++R+ Sbjct: 264 IQPDGSLYFPPLMNMSTLRANALLRRWIAGQGG--AMPSRDALKRI 307 >gi|15605575|ref|NP_220361.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|61216368|sp|O84847|TILS_CHLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3329312|gb|AAC68437.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|296437327|gb|ADH19497.1| PP-loop superfamily ATPase [Chlamydia trachomatis G/11222] gi|297748968|gb|ADI51514.1| TilS [Chlamydia trachomatis D-EC] gi|297749848|gb|ADI52526.1| TilS [Chlamydia trachomatis D-LC] Length = 321 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ET+ +R + +G L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183 Query: 189 CEDPSNTDDRFERVRVR 205 +D +N ++RF R R+R Sbjct: 184 VQDITNCNERFLRARMR 200 >gi|255020986|ref|ZP_05293041.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756] gi|254969591|gb|EET27098.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756] Length = 465 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 12/185 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L ALH++ D F A VDH + + ++V + Sbjct: 25 VILAFSGGRDSTALFWALHAIGQD-------FVAAHVDHGWHPRSAEWAARCAEVAASAG 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AR RYA + + ++TA DDQ ET +++ R Sbjct: 78 VPFVLRQLGKDLCGEGPEDVARRGRYAAL--QSLLGPGQFLLTAQHRDDQAETFLLQALR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + ++RP L C + ++ +L +R + W EDP+N D RF R Sbjct: 136 GAGAAGLAAMPWRRPLGSGV---LARPLLDCSGQTLQGYLHRRGLQWIEDPANRDPRFAR 192 Query: 202 VRVRR 206 RVRR Sbjct: 193 SRVRR 197 >gi|282852626|ref|ZP_06261968.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1] gi|282556368|gb|EFB61988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1] Length = 238 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 10/155 (6%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKT 116 +DHCLR+ + E + + + +I SW + PQTG+ A ARE RYA ++ K Sbjct: 23 LDHCLRKDSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKK 82 Query: 117 INATLIMTAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCR 173 ++TAH DD +E + ++ R D AE + + G D+ + + RP ++ Sbjct: 83 YQVDYLLTAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNLDS------MRLLRPLIKYS 136 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + + + + + ED +N +D R R+R +V Sbjct: 137 KDQLLEYDKRNGLDYIEDETNFEDDTLRNRLRHYV 171 >gi|238917789|ref|YP_002931306.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750] gi|238873149|gb|ACR72859.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750] Length = 486 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 17/193 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V +SGG+DS+ LL+ L + R + + A+ V+H +R+ A D+ + +C R+ Sbjct: 24 VVVGLSGGADSVCLLMVLKGYIERRRL-QTELCAVHVNHGIRQEAGDDEEFARALCERMG 82 Query: 82 I---AHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + A+ + + +K Q G+ A R+ RY + +E K NA I AH +DQ ETV Sbjct: 83 VEFMAYHIDAAGLAK-QLGMSVEEAGRKERYRIFNEACKGRNAR-IAVAHHMNDQAETVL 140 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M R + KG+ G+ + D I+ RP L R ++ L N + D +N Sbjct: 141 MNLSRGTSLKGIGGIRPVRDNII--------RPLLSVTRAEVEEVLKDFNQPYVTDATNL 192 Query: 196 DDRFERVRVRRFV 208 + + R +R V Sbjct: 193 CNDYTRNSLRNVV 205 >gi|24373213|ref|NP_717256.1| cell cycle protein MesJ [Shewanella oneidensis MR-1] gi|61216652|sp|Q8EGF9|TILS_SHEON RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24347437|gb|AAN54700.1|AE015610_4 cell cycle protein MesJ [Shewanella oneidensis MR-1] Length = 464 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 13/186 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L L R +++ I V H L A + ++ +R Sbjct: 25 LVLAYSGGVDSEVLAYGLSEYAKQRP--DLRYQLIYVHHGLSPNADNWAKHCQ---ARAA 79 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V+ + + P+ + A AR+ARY I H + +++TAH DDQLET+ + Sbjct: 80 IYGLPVTVERVQLILGPRVSVEAEARKARYQAILPHLNPQD--ILLTAHHEDDQLETILL 137 Query: 138 RSQRDYAEKGMGLSGMCDTI-LYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R KG+ G + L D + RP L RE I +F R + ED SN Sbjct: 138 ALKRGQGPKGLAAMGQIQPLSLADKGSCLQVRPLLDISREMIETFAQTRQLVHIEDESNQ 197 Query: 196 DDRFER 201 DD+++R Sbjct: 198 DDKYDR 203 >gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 326 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 18/189 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG+DS LL+A + + G++ AI V+H L+ A D + VCSRL I Sbjct: 20 VAYSGGADSSALLVAC----ARQWPGQV--VAIHVNHGLQAAAADFEAHCRSVCSRLGIP 73 Query: 84 -HSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138 H ++ P AAR ARY AL + I A DDQ+ET+ + Sbjct: 74 LHVEAVHAHAVPGQSPEDAARIARYKAFDALAQMECAGVAIKSIAIAQHADDQVETMLLA 133 Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL+G+ + RP L+ + ++ +L+ N W DP+N D Sbjct: 134 LGR-----GAGLAGLSGMPAQWQRGKVHFFRPLLQVAGDALKRWLVANNEPWVSDPTNAD 188 Query: 197 DRFERVRVR 205 R+ R +R Sbjct: 189 HRYTRNHIR 197 >gi|330985127|gb|EGH83230.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 445 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V N P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + +++T DDQ ET+ R R +G L+ M D + + RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q ++W EDPSN D RF R +R V Sbjct: 171 SRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206 >gi|313646751|gb|EFS11210.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T] gi|333010683|gb|EGK30116.1| tRNA(Ile)-lysidine synthase [Shigella flexneri VA-6] Length = 416 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +A SGG DS + LH ++ R+ + AI V H L A V + +VC + ++ Sbjct: 1 MAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTHCENVCQQWQV 57 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 58 PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + I RP L R ++ + L + W ED SN DD ++R Sbjct: 116 SGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDESNQDDSYDR 171 >gi|256397528|ref|YP_003119092.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928] gi|256363754|gb|ACU77251.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928] Length = 358 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L A V S ++F ++VDH L+E + Sbjct: 13 AVRKTLSGLAPGGLVLVACSGGADSIALACATAFVAPRLS---LRFGGLTVDHNLQEGSA 69 Query: 68 DE----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + VR+++ + + SV + P+ AAAR ARY + A+ + A ++ Sbjct: 70 AQAERVVRFLASLGFDPVESLSVRVEGHGGPE----AAARVARYGALDAAAERLGAATVL 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLL 182 HT DDQ ETV + R + L+GM Y +RPFL R + Sbjct: 126 LGHTRDDQAETVLLGLARGSGAR--SLAGMPAQAGRY------ARPFLDLPRATTVAASA 177 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 +DP N D + R RVR Sbjct: 178 AEGFEPWDDPHNADPAYTRSRVR 200 >gi|255692690|ref|ZP_05416365.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565] gi|260621576|gb|EEX44447.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565] Length = 426 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 21/190 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ILVA+SGG+DS+ LL LH+ + A + LR E+ +DE ++V +C + Sbjct: 22 ILVALSGGADSVALLCILHT-------AGYRCEAAHCNFHLRGEESNRDE-QFVRQLCEK 73 Query: 80 LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +I + + ++ T + ARE RY + K A +I AH DD +ET+ Sbjct: 74 YKINLHTIDFDTTRYATEKHISIEMGARELRYNWFEKTRKDCQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N + RP L RE+I +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGVVVRPLLCINREEIIHYLQSIQQEYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|172061025|ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] gi|171993542|gb|ACB64461.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] Length = 468 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 25/228 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALADLPADARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + RL + + S + P+ G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ ++ RPFLR R + Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225 + QR ++W +D SN D R+ R +R ID L AL + F+D Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPALAMHFPGFRD 224 >gi|319790338|ref|YP_004151971.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1] gi|317114840|gb|ADU97330.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1] Length = 443 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 13/194 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVR 71 +L+ P +LVA+SGG DS+ LL L + + + +A+ V+H LR E+ +DE R Sbjct: 14 NLIPPGSKLLVALSGGPDSVALLNVLLELRGELQLSSL--AAVHVNHQLRGAESERDE-R 70 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +V ++C +L + + G+ AAAR+ RY + + + HT D Sbjct: 71 FVKELCGQLGVPLFTERVTVNPKGKGVEAAARQERYRVFDRVLRLWKGDYVALGHTASDL 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + KG G+ G+ L + ++ RP R ++ +L + + + D Sbjct: 131 AETVLLN-----LAKGTGIRGL-RGFLPKRDRYV-RPLFEVTRREVEEYLELKGLPYIVD 183 Query: 192 PSNTDDRFERVRVR 205 SN FER +R Sbjct: 184 SSNLSTDFERNLIR 197 >gi|295098677|emb|CBK87767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 428 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 7/181 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LV SGG DS LL L + DR ++ A+ + H L A D V + VCS Sbjct: 15 QLLVGFSGGLDSTVLLHRL-KLWRDRE-PDVQLRAMHIHHGLSPHADDWVAHCEAVCSGW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V G+ A AR+ARYA S + A ++TA DDQ ET + + Sbjct: 73 AIPLIVERVTLEDEGLGIEAQARKARYAAFSGALQQGEA--LVTAQHLDDQCETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LS M + + I RP L R + ++ Q ++ W ED SN DD ++ Sbjct: 131 RGSGPAG--LSAMPERADFAETELI-RPLLGETRASLEAWAQQHHLCWIEDESNQDDSYD 187 Query: 201 R 201 R Sbjct: 188 R 188 >gi|237742841|ref|ZP_04573322.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13] gi|229430489|gb|EEO40701.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13] Length = 446 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE K I A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKIEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42] Length = 462 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I++ +SGG DS+ LL L+ + D + I+ A ++H +R E KD + YVS +C Sbjct: 22 IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V S K L AR+ RY + E I A I H +DQ ETV Sbjct: 78 MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ I Y + I RP L R +I + N++ D +N Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRIDKTNL 191 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 192 ENIYTRNKIR 201 >gi|168334111|ref|ZP_02692324.1| tRNA(Ile)-lysidine synthetase [Epulopiscium sp. 'N.t. morphotype B'] Length = 450 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 20/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG+DSM LL L+ +++F I V+H +R A+ ++ +V + Sbjct: 26 IVVAVSGGADSMMLLDYLYR---NKNFLYISIRIAHVNHKMRVDAEKDMEFVKNYAKERE 82 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V+ +K + AA R+ RY E +++ T I TAHT +DQ ETV M Sbjct: 83 IICDVLECDIEALAAKTKMSSEAAGRKVRY----EFFESLPHTKIATAHTANDQAETVLM 138 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R KG+ G++ + I+ RP L RE++ + I + D +N Sbjct: 139 RFLRGSDVKGLSGINAKRENII--------RPILCITREEVEFYCNHHGIEYKTDHTNFL 190 Query: 197 DRFERVRVR 205 + + R ++R Sbjct: 191 EIYTRNKIR 199 >gi|88705811|ref|ZP_01103520.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71] gi|88699882|gb|EAQ96992.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71] Length = 422 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 11/189 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + VA SGG DS LL A H DR A+ +H L+ A+ + C + Sbjct: 16 GQLFVAYSGGLDSTVLLHAAHKTCPDR------LVALHANHGLQAEARRWQAHCEAFCEQ 69 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L +A + +G+ AAAR+ARY + + +++ AH DDQ ET+ +R Sbjct: 70 LGVAFASTELSLEPAGSGMEAAARDARYRWFED--RIGRGGVLLMAHHQDDQAETLLLRL 127 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G L+GM + RP L R ++ + + +SW EDPSN D RF Sbjct: 128 LRGAGPDG--LAGMPQHRALGAGS-LLRPLLSLPRRALKEYAEESGLSWVEDPSNGDMRF 184 Query: 200 ERVRVRRFV 208 +R +RR V Sbjct: 185 DRNYLRREV 193 >gi|294140020|ref|YP_003555998.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12] gi|293326489|dbj|BAJ01220.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12] Length = 467 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A SGG DS L + L R + ++ + V H L + A +V SR Sbjct: 29 AKLVLAYSGGVDSELLALGLSEFA--RQHHEYRYLLVHVHHGLSDNAD---AWVGHCESR 83 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +S K ++ P+ + A AR ARY I +A ++TAH DDQLETV Sbjct: 84 ATVYGLPISIKRVVVDTGPRKSVEAEARNARYNAIKSQMAPGDA--LLTAHHLDDQLETV 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R K GLS M + ++ + + RP L RE I + + D SN+ Sbjct: 142 LLALKRGLGPK--GLSAMGSSQVFGKDKQLIRPLLSISREQIEAKASAVGLVHINDESNS 199 Query: 196 DDRFER 201 DD+++R Sbjct: 200 DDKYDR 205 >gi|126701186|ref|YP_001090083.1| putative ATPase [Clostridium difficile 630] gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26] gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932] gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255] gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55] gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34] gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79] gi|260685080|ref|YP_003216365.1| putative ATPase [Clostridium difficile CD196] gi|260688738|ref|YP_003219872.1| putative ATPase [Clostridium difficile R20291] gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58] gi|122973554|sp|Q181G3|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium difficile] gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196] gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291] Length = 462 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I++ +SGG DS+ LL L+ + D + I+ A ++H +R E KD + YVS +C Sbjct: 22 IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V S K L AR+ RY + E I A I H +DQ ETV Sbjct: 78 MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ I Y + I RP L R +I + N++ D +N Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRIDKTNL 191 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 192 ENIYTRNKIR 201 >gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM] gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Riemerella anatipestifer RA-GD] Length = 427 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 18 YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75 Y H L+AVSGG+DSM L + + + K +++ LR E + + V + Sbjct: 18 YNEHQFLLAVSGGADSMVLAHLMKQIDA-------KIEIAHINYKLRSEDSDKDAALVQE 70 Query: 76 VCSRLRIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C + I VS K+ KP + ARE RY K + + ++TAH +DQLE Sbjct: 71 FCEKHHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLE 130 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T + R KG+ G+ + IL RP L +E+I F +I++ ED Sbjct: 131 TFIINLSRGSGIKGLAGIPNNENEIL--------RPLLDFSKEEIYHFAEAHSIAFREDK 182 Query: 193 SNTDDRFERVRVRRFV 208 SN + R ++R V Sbjct: 183 SNQKQDYLRNKIRHSV 198 >gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P] gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P] Length = 436 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 21/214 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS+ L L ++ D + F+ ++ L + +V ++ L Sbjct: 21 LLIAISGGLDSVVLTRLLSTLKFDITLAHCNFNLRGIESNL------DAIFVEELAKELA 74 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + S+K K + AAR RY E + + I+TAH DD LET + Sbjct: 75 VKCFSTSFKTEKLAKEKKESTQIAARNLRYHWFQEISARHHFDYILTAHHADDNLETFLI 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL+G T + ++ + RP L+ RE+I F + NI W ED SN Sbjct: 135 NLTR-----GTGLAGF--TGIPPVHGNVIRPLLQFSREEILHFAKENNICWREDQSNAST 187 Query: 198 RFERVRVRR----FVRDIDLHALYLKMKKFQDLR 227 ++ R ++R ++DI+ + L K ++L+ Sbjct: 188 KYLRNKIRHKILPVLKDINPNMLASFSKTLENLQ 221 >gi|126697179|ref|YP_001092065.1| ATPase [Prochlorococcus marinus str. MIT 9301] gi|126544222|gb|ABO18464.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9301] Length = 336 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76 ++IL++VSGG DSM LL ++ + K+ +ISV DH E + + D Sbjct: 33 SNILISVSGGQDSMTLLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKDY 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129 C I+ S + +K ARE RY + E AKT+ T ++T HT Sbjct: 87 CEDKNISFSYD--QANKESISSEEKAREWRYKKLCERAKTLLNTNQQKHNIYLLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLIENQIFLIRPILIFSREDTKQFCNDMKIPVW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N+D + +R VR+ + Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221 >gi|298368794|ref|ZP_06980112.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str. F0314] gi|298282797|gb|EFI24284.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str. F0314] Length = 430 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 9/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL L + F A+ V H L A D + D C+RL Sbjct: 12 IEVGLSGGLDSVVLLHMLSRLRQQHGF---SLRAVHVHHGLSPNADDWAEFCLDYCNRLS 68 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K +G+ AAAR RY + S+ I + AH DDQ+ET + R Sbjct: 69 IPIRIAHVRVKKGNSGIEAAARAERYRVFSDGLSDI----LALAHHQDDQVETFMLAVVR 124 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + + +W RP L R D++ + ++ + ED SN D + R Sbjct: 125 GGGLRSLAAMPQQRDLNAETKIW--RPLLPFTRSDLQHYAELHHLDFIEDESNKDSAYLR 182 Query: 202 VRVR 205 +R Sbjct: 183 NWLR 186 >gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868] gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868] Length = 424 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 18 YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75 Y H L+AVSGG+DSM L + + + K +++ LR E + + V + Sbjct: 15 YNEHQFLLAVSGGADSMVLAHLMKQIDA-------KIEIAHINYKLRSEDSDKDAALVQE 67 Query: 76 VCSRLRIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C + I VS K+ KP + ARE RY K + + ++TAH +DQLE Sbjct: 68 FCEKHHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLE 127 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T + R KG+ G+ + IL RP L +E+I F +I++ ED Sbjct: 128 TFIINLSRGSGIKGLAGIPNNENEIL--------RPLLDFSKEEIYHFAEAHSIAFREDK 179 Query: 193 SNTDDRFERVRVRRFV 208 SN + R ++R V Sbjct: 180 SNQKQDYLRNKIRHSV 195 >gi|157962688|ref|YP_001502722.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345] gi|157847688|gb|ABV88187.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345] Length = 469 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 6/109 (5%) Query: 94 PQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 P+ + A AR RY AL+SE + ++MTAH DDQLETV + +R KG L+ Sbjct: 106 PRVSVEAQARTVRYQALLSELEQ---GDVLMTAHHQDDQLETVLLALKRGLGPKG--LAA 160 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 M ++ W+ RP L + +I + Q NIS ED SN DD+++R Sbjct: 161 MGKVQCFEQQHWLIRPLLDFSKVEIEVYAKQHNISHIEDESNFDDKYDR 209 >gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] gi|68262940|emb|CAI36428.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] Length = 350 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 16/199 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R+ A + +SGG+DS+ L+ H +L +K A+ VDH L+E + R Sbjct: 33 ARAAQVRAGVAAGLSGGADSLALV---HGLLRC----GVKVHAVVVDHQLQEGSAQVARQ 85 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +D L + + P G AR+ARY + A ++ AHT DD Sbjct: 86 AADTALSLGATAEIRTVDVEGPGEG---PARQARYEALGAAAA---GRPLLVAHTADDDA 139 Query: 133 ETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E + + R A GM + W+ RP L C R + + ++W Sbjct: 140 EGMLIGLVRGSGAEAIAGMRSVHTDHAAVAAGAAWLGRPLLNCTRAETEAECRAAGLNWW 199 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP N+ D + R R+R V Sbjct: 200 EDPHNSSDAYLRSRIRTHV 218 >gi|270308585|ref|YP_003330643.1| PP-loop [Dehalococcoides sp. VS] gi|270154477|gb|ACZ62315.1| PP-loop [Dehalococcoides sp. VS] Length = 476 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 23/263 (8%) Query: 7 ESVRFFVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR +++ LV + IL+AVSGG DS+ +L +H + S+ F ++H LR Sbjct: 9 ERVRKYIKKQGLVSAGNEILLAVSGGPDSVCMLYIMHKLSSEMGF---SLRLAHLNHGLR 65 Query: 64 -ETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTIN 118 E ++ + YV+++ L + +S K K + L AARE RYA + A Sbjct: 66 GEESERDAAYVAELADNLGLPLCQQKISVKAYKDEHHLSTEEAAREMRYAFLCRTAAEHG 125 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRR 174 A + HT DD +ETV + R + GL G+ + D+ L + RP L R Sbjct: 126 AAAVAVGHTIDDNIETVMLHLVRGSGTR--GLQGLRSVVGRDIAGAGCLRVIRPLLSLSR 183 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNN 232 + +S+ + +S +D +N R R+R V L L F++ LR Sbjct: 184 AETQSYCREAGLSPVQDATNQSTEPLRNRIRLEV----LPMLRAINPAFEETILRTAFIA 239 Query: 233 AVAMLIPKYLTVHMRSIIAISQD 255 M + +T M++ + I QD Sbjct: 240 GEEMALLDEVTSQMKAELVIRQD 262 >gi|328954659|ref|YP_004371992.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2] gi|328454983|gb|AEB06177.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2] Length = 510 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 26/202 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKD-EVRYV 73 +++ VSGG+DS LL+ + D S + + + V+H LR +A D + +V Sbjct: 30 VVLMVSGGADSTALLLMACTSKLDIDDGCGRASIARNRLHVLHVNHHLRGSASDGDEAFV 89 Query: 74 SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYA--------LISEHAKTINATLIM 123 ++C RL + V S ++ + L AAAR+ RYA L+ E + I Sbjct: 90 RELCRRLGVPVCVEHASLRDLGGRN-LEAAARDVRYAAARRYLKELVEEAGCPRRSARIA 148 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAHT +D+ ET +M + R G G+SG+ +I NL I RP + E+++ +L Sbjct: 149 TAHTANDRAETFFMNAIR-----GSGISGL-SSIPRRRNL-IVRPLIDRTHEELQRYLEV 201 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 + W ED SN D F R VR Sbjct: 202 AGLRWREDESNRDTSFLRNYVR 223 >gi|224283823|ref|ZP_03647145.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313140977|ref|ZP_07803170.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171] gi|313133487|gb|EFR51104.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171] Length = 372 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 7/176 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L V + S+G I+ A+ VDH L+E + + + + C L Sbjct: 45 VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSDEVAQSAARRCCGLG 101 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +VV + S G+ AAAR+ARY +++ A+ +A ++ AHT DDQ ETV M Sbjct: 102 LDPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R L+GM + D + +RPFLR R D I+W +DP+N D Sbjct: 162 RSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214 >gi|170768385|ref|ZP_02902838.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627] gi|170122489|gb|EDS91420.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627] Length = 431 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 9/194 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVS 74 L+ ILVA SGG DS + LH ++ R + AI V H L A V + Sbjct: 9 LLSSRQILVAFSGGLDST---VLLHQLVQWRMENPGVTLRAIHVHHGLSANADAWVMHCE 65 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ ET Sbjct: 66 NICQQWQVPLVVERVQLAEEGLGIEAQARQARYQAFAH--TLLPGEVLVTAQHLDDQCET 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G LS M + + I RP L R ++ + + + W ED SN Sbjct: 124 FLLALKRGSGPAG--LSAMGEVSDFAGTQLI-RPLLARTRGELELWAHEHGLRWIEDESN 180 Query: 195 TDDRFERVRVRRFV 208 DD ++R +R V Sbjct: 181 QDDTYDRNFLRLHV 194 >gi|260663744|ref|ZP_05864632.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN] gi|260551795|gb|EEX24911.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN] Length = 449 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 12/206 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ R + + V+H Sbjct: 8 MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPKLR---RPRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + ++W ED +N D R RVR Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202 >gi|239993621|ref|ZP_04714145.1| cell cycle protein MesJ [Alteromonas macleodii ATCC 27126] Length = 441 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL +V++ R A+ V H L + A+ ++ C Sbjct: 31 LVVAYSGGVDSTVLL---QAVIAYREQFDSPIHAVHVHHSLSDNAEQWAKHCELQCRLED 87 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A H ++ + L A AR+ RY + E I L++ H +DQLETV ++ + Sbjct: 88 VAFHLYRVDVDTGSRKSLEAEARKVRYNALLEVCDQIGGVLLLGQHA-EDQLETVLLQLK 146 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G L+GM + + Y + I RP L + +I ++ + + W ED SN + F+ Sbjct: 147 RGAGPQG--LAGMGE-VQYRGDTLIMRPMLALEKAEIVAYAEEEMLQWVEDESNQQNSFD 203 Query: 201 R 201 R Sbjct: 204 R 204 >gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4] gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4] Length = 307 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 13/188 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L +SGG DS ++ LHS++ GK + H R+ + + + V + Sbjct: 19 PDAVLCGISGGVDS---IVLLHSLVET---GKRPI-VLHFQHGWRQDEESDAKLVEETAK 71 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + + K+ + A AR RY A+ N ++ AH DDQ+ET M+ Sbjct: 72 ELGV--EFLKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVLAHHADDQVETFLMQ 129 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G G+ D I L + RP L + DI F QRN W ED +N + Sbjct: 130 LIRGTGSRGWGM----DRITTLGKLVVYRPLLDFWKSDIIRFAQQRNFRWREDETNENTH 185 Query: 199 FERVRVRR 206 R R+R+ Sbjct: 186 LLRNRIRK 193 >gi|325981478|ref|YP_004293880.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212] gi|325530997|gb|ADZ25718.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212] Length = 450 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 21/212 (9%) Query: 8 SVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +VR + + + P H+ VA+SGG DS+ LL AL S+ + + SA+ ++H + A Sbjct: 15 NVRNTLLAHIKPGDHLAVALSGGVDSVVLLHALASLSREI---PLTLSAVHINHGISSNA 71 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMT 124 ++ +C I+ +++ K +TG L A ARE RY + S+ I+A ++ Sbjct: 72 TLWSKFCCHLCHSYGIS-IYIAYLKIKKETGESLEAKAREERYRVFSQ----IHANYVVL 126 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRS 179 A DDQ ET+ ++ R G G+ G+C + I RP L R++I S Sbjct: 127 AQHLDDQAETLLLQLLR-----GAGIKGLCGMPPVRKLSSPAIPQILRPLLEISRDEIES 181 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + ++W +D SN F R +R + I Sbjct: 182 YGRLNKLNWIKDESNDSIIFNRNFLRHEILPI 213 >gi|261417161|ref|YP_003250844.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373617|gb|ACX76362.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328185|gb|ADL27386.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 393 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 53/242 (21%) Query: 1 MFLSPIESVRF--FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS- 57 M L+ +E++R F R +L+AVSGG DS+ L H + + + I++ I+ Sbjct: 1 MSLNLVENIRHHGFKR-------LLLAVSGGLDSICLA---HYFIENSAALGIEWLGIAH 50 Query: 58 VDHCLRE-TAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARY 107 V H LRE TA + ++V + +H V + KN+ + L AR+ARY Sbjct: 51 VHHGLREGTADRDAKFVEEFAK----SHDVPFFLKKLDGEALKNA--EGSLEENARDARY 104 Query: 108 ALISEHA-----KTINAT-----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 + E A ++ N I+TAH DQ ET+YMR +R G+ Sbjct: 105 KALVEIALNKKWRSRNGVRDDIEEGGVTIAIVTAHHAGDQAETMYMRLKRGTTLAGLRGI 164 Query: 152 GMCDTILYDLNL--------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 I D +L ++ RPFL R+++ ++ + +SWCED SN D +F R + Sbjct: 165 QEVRIIQDDTSLVSRLSSLVFLYRPFLNVTRKELLTYARENGLSWCEDESNADVKFARNK 224 Query: 204 VR 205 +R Sbjct: 225 IR 226 >gi|261338173|ref|ZP_05966057.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093] gi|270276810|gb|EFA22664.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093] Length = 287 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 12/180 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS+ L A +V + S+G ++ A+ VDH +++ + + + C+ L Sbjct: 47 ILVACSGGRDSLALAAAARTVCT--SWG-LRCGAVIVDHSMQQGSAEVAARAAKQCADLG 103 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +V PQT G AAAR+ RY I+ A A ++ AHT +DQ ETV + Sbjct: 104 LEPVIVERIVLDPQTMRQRGSEAAARQMRYETITRVAGRTGAEAVLLAHTRNDQAETVLI 163 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 GM +GM + T + D+ L RP L R D + + +DP+N + Sbjct: 164 NLLTSGGLDGM--AGMPERTQIADVALL--RPLLDLTRADTTQICESLGLEFWDDPTNGE 219 >gi|257487064|ref|ZP_05641105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V N P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + +++T DDQ ET+ R R +G L+ M D + + RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q + W EDPSN D RF R +R V Sbjct: 171 SRVELEGYAHQHGLHWVEDPSNDDSRFSRNFLRSDV 206 >gi|197361444|ref|YP_002141080.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197092920|emb|CAR58349.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 27/296 (9%) Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110 + AI + H L A VR+ VC R ++ V + G+ A AREARY Sbjct: 16 VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERMTLADNGLGIEAHAREARYRAF 75 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 ++ + ++ TA DDQ ET + +R G LS M + + L + RP L Sbjct: 76 AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 R R+ + + ++ + W ED SN DD ++ R F+R L AL L +++ V Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYD----RNFLR---LRALPLLQRRWPHFPAAV 183 Query: 231 NNAVAM------LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQIS 280 + + L+ + L + I ++ L + +L +R +A + Sbjct: 184 ARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMLMSDVRRAAILRRWLAMRNAP 242 Query: 281 LPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYP 332 +P ++ER+ + + C+ G I R ++ WI T +++P Sbjct: 243 MPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETTVVWP 298 >gi|227824811|ref|ZP_03989643.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21] gi|226905310|gb|EEH91228.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21] Length = 350 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ A SGG+DS+ L + + + V H LR E A ++ R+VS C Sbjct: 24 VIAACSGGADSLTLTDIMAKAAEEDD---VTVLVAHVHHHLRGEEADEDARFVSAFCKDR 80 Query: 81 RIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++++ + + K + GL AAR RY + + K + A I AH DDQ ET+ Sbjct: 81 DLSYTQFDIDPQALKEKEGLSLEDAARRLRYEALETYRKKVGAQGIFVAHHEDDQAETIL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R + GL GM +N +I+RPFL R+D+ ++ + +S+ D +N + Sbjct: 141 MNLVRGTGTR--GLRGML-----PVNGYIARPFLAATRKDMETYCKEEGLSYRTDSTNGN 193 >gi|184154695|ref|YP_001843035.1| cell cycle protein [Lactobacillus fermentum IFO 3956] gi|183226039|dbj|BAG26555.1| cell cycle protein [Lactobacillus fermentum IFO 3956] gi|299782818|gb|ADJ40816.1| Cell cycle protein [Lactobacillus fermentum CECT 5716] Length = 449 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 12/206 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ R + + V+H Sbjct: 8 MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPKLR---RPRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + ++W ED +N D R RVR Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202 >gi|83319710|ref|YP_424013.1| hypothetical protein MCAP_0014 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283596|gb|ABC01528.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 401 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 108/216 (50%), Gaps = 15/216 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGG DS+ LL + ++ ++ V++ R + ++ + V ++C + + Sbjct: 13 LLAISGGPDSVFLLCNIVKIIDSKNL-----VVCHVNYNFRSDSINDQKIVINLCKKFDL 67 Query: 83 AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ S + + AR RY ++ AK ++ AH F+D +ET ++ Q Sbjct: 68 KLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYQIYNLLVAHNFNDLIETYLLQLQ 127 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R+ GL T+ + +L + RP L ++ +I +L IS+ D +NTD +++ Sbjct: 128 RNNLVDYYGLK----TVSHYKDLVVYRPLLDIKKSEILDYLKTNQISYAIDSTNTDIKYQ 183 Query: 201 RVRVRRFVRD---IDL-HALYLKMKKFQDLRVKVNN 232 R ++R + + ID+ + + + KK + ++ VNN Sbjct: 184 RNKIRSIIDESIFIDIKNQIDIDNKKLETIKKIVNN 219 >gi|70728575|ref|YP_258324.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5] gi|68342874|gb|AAY90480.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5] Length = 438 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + + SA+ + H L+ A + C L + Sbjct: 23 VAFSGGLDSTVLLHLLAGLAQHHRLPPL--SAVHIHHGLQAAADAWPEHCQAFCDALGVP 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ L AAREARY + T + +++TA DDQ ET+ R R Sbjct: 81 LQVLR-VQVPAGASLERAAREARYGAFAR--LTASGEVLLTAQHRDDQAETLLFRLLRGA 137 Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G LS M + L D L RP L R +++ + + +SW EDPSN D ++ R Sbjct: 138 GVRG--LSAMPSERPLGDGQL--LRPLLDVSRAELQCYAAEHQLSWVEDPSNADHQYSRN 193 Query: 203 RVRRFV 208 +R V Sbjct: 194 YLRHQV 199 >gi|51894334|ref|YP_077025.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863] gi|61217236|sp|Q67JG9|TILS_SYMTH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51858023|dbj|BAD42181.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863] Length = 482 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 39/278 (14%) Query: 6 IESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR +V ++ P ++VAVSGG DS+ L L+ + ++ +DH L Sbjct: 4 LDRVREYVVRHGMLEPGDRVIVAVSGGPDSLALTHVLYRLAP---AWRLSLHLFHLDHGL 60 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTIN 118 R E ++ + +V+D+ L + + V+ + + + L AR RYA ++ A I Sbjct: 61 RGEASRADAAFVADLARELSLPLTTVTLRPGELEAMRGSLEDNARRRRYAEMARLAAAIG 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A T H +DQ ETV MR R GL+G+ + + L I RP L R++I Sbjct: 121 AQRAATGHNRNDQAETVLMRLLRGSGS--TGLAGI-PPVRREGGLTIIRPLLGASRQEIL 177 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 ++ ++ D +N FER R+R L L ++F D V+N Sbjct: 178 AYCRAHGLTPRMDATNLQGDFERNRIR-------LEILPALTERFGD--AVVDN------ 222 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 +A + D+L + LL L R + A CG Sbjct: 223 -----------LAQTADLLREEDRLLAELTREACARCG 249 >gi|332140486|ref|YP_004426224.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550508|gb|AEA97226.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype'] Length = 441 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 83/327 (25%), Positives = 139/327 (42%), Gaps = 34/327 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS + L +V+ R A+ V H L E A R+ C Sbjct: 31 LVVAYSGGVDSS---VLLQAVIEYREQYNGPIHAVHVHHGLSENADSWARHCELQCRLED 87 Query: 82 IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H V ++ + + A AR+ RY + K I L++ H +DQLETV ++ Sbjct: 88 VEFHLHRVEV--DTSARKSIEAEARKVRYNALLAVCKRIGGVLLLGQHA-EDQLETVLLQ 144 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R +G L+GM + + Y N I RP L + +I +F + W +D SN + Sbjct: 145 LKRGAGPQG--LAGMGE-VQYRGNTLIMRPMLSLDKAEIVTFADNEMLQWVDDESNQQNS 201 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSIIAISQD 255 F+ R F+R+ + L + ++ L V + A+ + V+ R + Sbjct: 202 FD----RNFLRNEIIPHL---LDRWPQLTKTVGRSAALCAEQSELVNDSAQRYFEDCKRT 254 Query: 256 ILNIDSTLLFYLLRVSAAI-------CGGQISLPGYRSMERVMLFLKSGKRGCVSIG--- 305 L +D L L R A+ GQ+S P E+V+L L++ + Sbjct: 255 NLRLDGKKLTSLSRPWQAMVIRAWFKAQGQLS-PSKAQAEQVLLMLEAKHDATPEVNFKW 313 Query: 306 RVVIDRRANFLWITRAVRNL-PTLILY 331 VI + W+ AV + P+ +L+ Sbjct: 314 GKVIRFDGDLYWVVNAVHDAEPSGVLH 340 >gi|257125521|ref|YP_003163635.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b] gi|257049460|gb|ACV38644.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b] Length = 497 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 24/196 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+A SGG DS+ L L + F K I+ S + ++H LR ++++++V + Sbjct: 32 ILIAFSGGPDSVFLYYFL------KFFKKKLEIEVSIVYINHNLRSDVENDLQFVKKFAA 85 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + + S +K + + AARE RY I K IN I T H DD +ET Sbjct: 86 ENNIDYYIESINVNKYAKEKKKSVELAARELRYEAIENIRKMINYDKIATGHNLDDNVET 145 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R G LSG+ N I RP L + +I FL N + D +N Sbjct: 146 FIFRLLR-----GTSLSGLRSIPKVREN--IIRPILEFEKSEILDFLKNENQDYIIDYTN 198 Query: 195 TDDRFERVRVRRFVRD 210 ++ + R F+R+ Sbjct: 199 NENNY----TRNFIRN 210 >gi|299771517|ref|YP_003733543.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1] gi|298701605|gb|ADI92170.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1] Length = 418 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L+ + + + V++ +RL I + K L A AR+ARY Sbjct: 8 KIRAIYIDHQLQSQSAEWGKLVAEQATRLDIPFIIQ--KVQVTDGNLEAQARQARYQAYR 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + N TL++ AH DQ ETV +R G G+ G+ ++ Y +++ I RPF Sbjct: 66 QHLQP-NETLVL-AHHQQDQAETVILR-----LLSGAGVDGLAAMQSVDYRVDMTIWRPF 118 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q I + DP+N D ++R R Sbjct: 119 LDLSREQIADWTTQLEIEYVNDPTNYDIHYDRAWSRE 155 >gi|220934352|ref|YP_002513251.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995662|gb|ACL72264.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 419 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 7/200 (3%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R +R L + ++VA SGG DS + LH+ + R G + AI V H L A Sbjct: 8 LRDALRHLPPASRLIVAFSGGLDSH---VLLHAAAALRGVGFPELRAIHVHHGLNPRADA 64 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + VC L + V+ ++ P G A R + A + ++TAH Sbjct: 65 WVEHCGQVCEDLGVELRVIH-VDASPADGESPEAAARRVRYAALEAALLPGDGLLTAHHQ 123 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ET+ ++ R G+ + W RP L RE + ++W Sbjct: 124 RDQAETLLLQLLRGSGPAGLAAMPRWQPLGAG---WHGRPLLEVSREVLEGHARDHGLAW 180 Query: 189 CEDPSNTDDRFERVRVRRFV 208 ED SN D RF+R +R + Sbjct: 181 IEDDSNRDTRFDRNLLRERI 200 >gi|50365488|ref|YP_053913.1| lysidine synthetase [Mesoplasma florum L1] gi|61216500|sp|Q6F0E4|TILS_MESFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50364044|gb|AAT76029.1| lysidine synthetase [Mesoplasma florum L1] Length = 398 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 18/188 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVC-- 77 LVAVSGG DSM +L L K+ I V H RE + + + V D C Sbjct: 13 LVAVSGGPDSMFMLNEL---------IKMNIKEIVVCHVNYNFREDSWKDQKLVEDFCLK 63 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L++ +++ SK + + AR RY E +K N ++ AH +D +ET + Sbjct: 64 NNLKLEKLIINQDYSKLKENFESWARNIRYDFFVEISKKYNIQNVLIAHNRNDLVETFLL 123 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R K GL+ T Y + I RP L + +I L + NI++ D +N D Sbjct: 124 QQDRKGYVKHYGLNK---TSTYK-EITIVRPMLNILKSEILKSLKEENIAFVIDSTNEDK 179 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 180 KYKRNKIR 187 >gi|257783916|ref|YP_003179133.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469] gi|257472423|gb|ACV50542.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469] Length = 489 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%) Query: 49 GKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMA---- 100 K + + V+H LRE D + +V + C L I +V+ K ++ + G + Sbjct: 24 AKERLHVLHVNHLLREDDADADQHFVQETCDSLDIPCTVLRADVAKLARERDGNVEEIGR 83 Query: 101 -----AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD 155 AARE L +E + I+TAHT DD+ ET M R G G+SG+ Sbjct: 84 RVRYDAARELAQKLCAEQGVSRQKAKILTAHTADDRTETFMMNVMR-----GSGMSGL-- 136 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 T + I RP L E ++ +L RN+ W ED +NTD + RV +R V Sbjct: 137 TSIPRHRGLIYRPLLNYTHEQLKDWLKARNLDWHEDATNTDTHYLRVYMRHNV 189 >gi|302187915|ref|ZP_07264588.1| PP-loop [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + +AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P + AAR+ARY+ S+ + +++T DDQ ET+ R R Sbjct: 88 FESVR-VQVEPGASIEQAARKARYSAFSQ--RLAEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R + + + ++W +DPSN D +F R Sbjct: 145 GVRG--LAAMPDRRVLGRGH-LLRPLLDVSRMQLEDYARRHGLNWIDDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|238061469|ref|ZP_04606178.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149] gi|237883280|gb|EEP72108.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149] Length = 336 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 87 VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 VS + P+ AAAREARY + E A+ A ++T HT DDQ ETV + R + Sbjct: 67 VSGRPGGPE----AAAREARYQALVEAARRHGAAALLTGHTRDDQAETVLLALARGAGPR 122 Query: 147 GMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 GL+GM DL + + RP L RE+ R ++ EDP N D + R RVR Sbjct: 123 --GLAGMPPR--RDLCGVPLLRPLLDVSREETRKACAALGLTPWEDPHNADASYARARVR 178 >gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208] Length = 240 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LVAVSGG DS+ LL H + + K ++H LRE A +E V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFCERHG 80 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I + + Q G+ AR RY + N + AH DDQ+ET+ M Sbjct: 81 IPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I ++ + +++ D SN Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNASQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|256846174|ref|ZP_05551632.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2] gi|256719733|gb|EEU33288.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2] Length = 446 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208] Length = 271 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LVAVSGG DS+ LL H + + K ++H LRE A +E V C R Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFCERHG 80 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I + + Q G+ AR RY + N + AH DDQ+ET+ M Sbjct: 81 IPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I ++ + +++ D SN Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNASQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|124021791|ref|YP_001016098.1| ATPase [Prochlorococcus marinus str. MIT 9303] gi|123962077|gb|ABM76833.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9303] Length = 343 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 46/305 (15%) Query: 20 AHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A +L+AVSGG DSM GLLI L R G DH + + + D Sbjct: 33 ASLLIAVSGGQDSMALLGLLIDL-----QRKHG-WSLEVWHGDHNWHQQSATIATELKDW 86 Query: 77 CSRLRIAHSVVSWKN-SKP-QTGLMAAAREARYALISEHAKTINAT-------LIMTAHT 127 C AH++ W + +KP QT A AR RY ++ H + +++ ++T HT Sbjct: 87 CE----AHNLSFWSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHT 142 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQR 184 D+ ET+ + R G+ C I D N+ + RP L RED + Sbjct: 143 SSDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSEL 202 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNN------AVAML 237 ++ DP+N++ F R RVR+ V + L +L+ + L ++N+ A+AML Sbjct: 203 SLPIWLDPANSNPDFSRNRVRQEVLPV-LESLHPGCSLRIAALAERLNHHHADQQAIAML 261 Query: 238 IPKYLTVHMRSIIAISQDILNID----STLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 L+ + QD+ + +TLL Y L+ S G SLP + +E++ Sbjct: 262 ALNNLS---KQNGLCRQDLAQLPITARTTLLAYWLKRS-----GAPSLPAVQ-LEQISQS 312 Query: 294 LKSGK 298 + GK Sbjct: 313 IGPGK 317 >gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63] gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Clostridium difficile NAP08] gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07] gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Clostridium difficile NAP08] gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07] Length = 462 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I++ +SGG DS+ LL L+ + D + I+ A ++H +R E KD + YVS +C Sbjct: 22 IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V S K L AR+ RY + E I A I H +DQ ETV Sbjct: 78 MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ I Y + I RP L R +I + N++ D +N Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERSEIEEYCEAYNLNPRIDKTNL 191 Query: 196 DDRFERVRVR 205 ++ + R ++R Sbjct: 192 ENIYTRNKIR 201 >gi|313902544|ref|ZP_07835945.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM 13965] gi|313467230|gb|EFR62743.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM 13965] Length = 632 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 84/198 (42%), Gaps = 37/198 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD------ 75 +LVAVSGG DSM LL L + G VDH LR + + R+V + Sbjct: 39 VLVAVSGGRDSMVLLDVLDRLRP--VLGLAALGVAHVDHGLRPDSAGDARWVEEQAAARG 96 Query: 76 ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C R+ I S L AR ARY ++ A+ A + AH DQ Sbjct: 97 LPFLCRRVHIRPGRRS---------LEEGARLARYRALAAMARQFGAQRVALAHHAGDQA 147 Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLR----CRREDIRSFLLQRNIS 187 ETV MR A G+ GL+GM W PF+R + ++ R + Sbjct: 148 ETVLMRL---LAGAGVRGLAGMP---------WRRGPFVRPLLATEPALLAAYAAARGLG 195 Query: 188 WCEDPSNTDDRFERVRVR 205 W +DPSN D F R R+R Sbjct: 196 WRDDPSNQDLTFLRNRIR 213 >gi|294784705|ref|ZP_06749993.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27] gi|294486419|gb|EFG33781.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27] Length = 446 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|227494492|ref|ZP_03924808.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436] gi|226832226|gb|EEH64609.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436] Length = 366 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 16/180 (8%) Query: 21 HILVAVSGGSDSMGLLIA----LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 H +VA SGG+DS+ L +A H + D F+A+ VDH LR + E V+ Sbjct: 38 HWVVACSGGADSLALTVATADWCHRLNKD-------FTAVIVDHQLRSESAAEAASVAAD 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETV 135 +I VV + G+ A AREARY + + T+N T ++ HT DDQ ETV Sbjct: 91 LIANKIPAVVVK-AQVRAGQGIEAQAREARYQALVDFCNTLNQPTAVLVGHTQDDQAETV 149 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSN 194 ++ R K L+GM + RPFL RR F + + +DP+N Sbjct: 150 LLKLARGAGMK--ALAGMPQQWRNPQGIKFHRPFLAEIRRRQTEEFCNCLGLEYVQDPTN 207 >gi|187918640|ref|YP_001884206.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH] gi|119861488|gb|AAX17283.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH] Length = 439 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 23/211 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ IES F+ ++ + +VA SGG+DS LL+ L L++ A H + Sbjct: 8 VTKIES--FYFKNSLPKGKSIVAFSGGADSTTLLLGLKEYLNN------NIVAFYFAHYI 59 Query: 63 RETAKD--EVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHA 114 R + E+ ++ C+ +I V K Q G+ AR+ RY + E Sbjct: 60 RPEFEQNLEIEHIKKFCNFHNITFQIKRCSVDIKRESSQLGMSVEELARKYRYNALLEAL 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K A I AH +DQ ET+ MR +G L G + + +N I RP L R Sbjct: 120 KENEARYIALAHNKNDQFETLVMR-----FFQGSFLDGF--SGIPIINGNIIRPLLEVSR 172 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 E+I FL NI + D +N +D + R R+R Sbjct: 173 EEIEQFLSLNNIVYFVDSTNHEDLYLRNRIR 203 >gi|255323491|ref|ZP_05364622.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277] gi|255299528|gb|EET78814.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277] Length = 328 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L +KF VD+ +R +KDEV D+ ++ Sbjct: 16 LLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEVASARDLAAKFNK 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V S + ++ AR ARY + + ++ AH FDD+ E M+ R Sbjct: 69 QIYVKSVRLG--ESNFEHEARAARYEFFGQICREQGYENLILAHQFDDKFEWFLMQLGR- 125 Query: 143 YAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GLS GM + + + I+RP L R+ ++ FL +RN+ + D +N D+F Sbjct: 126 ----GAGLSELLGMQELETRE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLTDQF 180 Query: 200 ERVRVR 205 +R VR Sbjct: 181 KRGFVR 186 >gi|291287206|ref|YP_003504022.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290884366|gb|ADD68066.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 417 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 22/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ LL H + + SA ++H R+T+ + ++ +D C +L Sbjct: 21 LLVAFSGGKDSVALL---HFLKRNEGIQGYSVSACHINHLFRKTSLWDEKFCADFCEKLS 77 Query: 82 IAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +S++ P + AR RY + K +A L++TAHT +D +ET Sbjct: 78 IP--FISYRADVPRYCEVKKMSFEHGARIVRYRALYNAMKHFDAELLLTAHTKNDVVETF 135 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ +A +G + + D +L+ RP L E+I ++ + I D +N Sbjct: 136 FI-----HAVQGASVFSLKGITERDRDLF--RPMLDISTEEILEYINRYKIKHAVDETNN 188 Query: 196 DDRFERVRVRRFVRD 210 DD + +R F+R+ Sbjct: 189 DDSY----LRNFIRN 199 >gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM 16795] gi|164604367|gb|EDQ97832.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM 16795] Length = 462 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I++ +SGG DS+ LL L+ + + I+ A ++H +R E KD + YV+ +C Sbjct: 22 IVLGISGGPDSVCLLHILNRL---KEQFDIEIYAAHLNHQIRGIEAQKDAL-YVTRLCEE 77 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I + V S K + + AR+ RY + E + +A I AH +DQ ET+ Sbjct: 78 MGIKYFVRSIDVPKYCQENKLSIEDGARKLRYEMFFEIMQRTHANKIAIAHNVNDQAETI 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ I Y + I RP L R +I S+ Q N++ D +N Sbjct: 138 LMRIMR-----GTGLHGL-RGIEYIRDNVIIRPILDIERSEIESYCEQYNLNPRIDQTNL 191 Query: 196 DDRFERVRVR 205 D + R ++R Sbjct: 192 DPIYTRNKIR 201 >gi|34498644|ref|NP_902859.1| cell cycle protein [Chromobacterium violaceum ATCC 12472] gi|61216591|sp|Q7NT72|TILS_CHRVO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34104497|gb|AAQ60855.1| cell cycle protein [Chromobacterium violaceum ATCC 12472] Length = 435 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 11/184 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ LL L + R +I SA+ V H L A + +C LR+ Sbjct: 21 VGFSGGLDSVALLSLLCEARARRP--EIGLSAVHVHHGLSPNADAWAAHCQALCDSLRVP 78 Query: 84 HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + ++ + AAAREARY + A + I AH DDQ ET+ ++ R Sbjct: 79 LRIERVHVRAGGGES-VEAAAREARYQVYRRSASEV----IALAHHQDDQAETILLQLLR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + LW RP L RE + +++ R +W +D SN D R+ R Sbjct: 134 GGGARALAAMPALRELAPGKLLW--RPLLEIPRERLEAYVKARGFAWVDDESNLDTRYRR 191 Query: 202 VRVR 205 +R Sbjct: 192 NLLR 195 >gi|260889219|ref|ZP_05900482.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254] gi|260861279|gb|EEX75779.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254] Length = 450 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 26/197 (13%) Query: 22 ILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+A SGG DS+ LL + +++S ++ S ++H LR +++++++++ S Sbjct: 23 ILIAFSGGPDSVFLYHLLDLMKNMIS------LEISIAYINHNLRYDVENDLKFINEFAS 76 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + H + S K + + AARE RY I K I I T H DD +ET Sbjct: 77 KNNVNHYIESINVKKYAAENKKSVELAARELRYETIENIRKKIGYNKIATGHNLDDNVET 136 Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R R + G+ G+ + + I+ RP L + +I SFL +N + D + Sbjct: 137 FIFRLLRGTSVTGLKGIPRVRENIV--------RPILDFEKSEILSFLRSKNYQYLVDYT 188 Query: 194 NTDDRFERVRVRRFVRD 210 N ++ + R F+R+ Sbjct: 189 NNENDY----TRNFIRN 201 >gi|315924895|ref|ZP_07921112.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621794|gb|EFV01758.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 486 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DSM LL H + + I A V+H +R E A+ + +V+ C+ Sbjct: 39 VIVGVSGGIDSMALL---HFLWTHADALGIAVMAGHVNHRIRGEAAEGDQTFVTQWCADH 95 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I A + V + + L A R AR + A I AH DDQ ETV Sbjct: 96 GIPALTAAADVPLTAKERKISLETAGRLARRRCFERWQRQTGAAKIALAHHLDDQAETVL 155 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + +G G+ G + + RPFL+ RRE I ++ + + ED +N Sbjct: 156 M-----HLIRGAGIRGAAG--MRPVAGAFVRPFLQVRREAIEAYAAAQQLPHVEDATNAS 208 Query: 197 DRFERVRVRRFV 208 D F R R+R V Sbjct: 209 DAFMRNRLRHQV 220 >gi|34763208|ref|ZP_00144172.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887118|gb|EAA24225.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 446 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|15896451|ref|NP_349800.1| cell cycle protein MesJ-like protein [Clostridium acetobutylicum ATCC 824] gi|61216713|sp|Q97EB0|TILS_CLOAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15026275|gb|AAK81140.1|AE007816_4 Cell cycle protein MesJ ortholog, ATPase of the PP-loop superamily [Clostridium acetobutylicum ATCC 824] gi|325510609|gb|ADZ22245.1| ATPase of the PP-loop superamily [Clostridium acetobutylicum EA 2018] Length = 461 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+VAVSGG DS+ LL L L D+ I A V+HC+R E A + YV C +L Sbjct: 21 IVVAVSGGPDSICLLHILFK-LKDKFNTSI--CAAHVNHCIRGEAADKDEEYVKKFCEKL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V V+ + + A RE RYA E + A I AH +DQ ET+ Sbjct: 78 DIQFYVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERFKANKIAIAHNANDQAETIM 137 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R +G+ G+ + D + RP + RR I + + D +N Sbjct: 138 MRIIRGTGTEGIKGIRPVRDG-------YYIRPLIEIRRSSIEKYCEDEKLMPRIDATNL 190 Query: 196 DDRFERVRVR 205 + + R ++R Sbjct: 191 ERDYNRNKIR 200 >gi|227502055|ref|ZP_03932104.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725] gi|227077210|gb|EEI15173.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725] Length = 297 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 36/202 (17%) Query: 22 ILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYV 73 + V +SGG+DS+ L A+ H V+ A+ VDH L RE A+ Sbjct: 5 VGVGLSGGADSLALCAAMIAEGHDVI-----------ALCVDHGLQDGSREQAEKAAWQA 53 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAH 126 + +R R+ +V + L A AR+ARY +S A+ A+ I AH Sbjct: 54 ESLGARARV---LVVRVPEEAGNSLEAVARQARYQAMSAAAREDGASRRGGGPLEIAVAH 110 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ET+ + + R ++GM + + + + RPFL+ RR D + + Sbjct: 111 TADDQAETLLLGALRGR------VAGMPERAVVE-GARVVRPFLQVRRADTEGACAELGL 163 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 +DP N D F RV +RR + Sbjct: 164 DVWQDPQNADTDFRRVALRREI 185 >gi|333025315|ref|ZP_08453379.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071] gi|332745167|gb|EGJ75608.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071] Length = 386 Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ ++VDH L+E + V+ + LR Sbjct: 87 VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 143 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A +V + P+ A A A+ EH A I+ HT DDQ ETV + Sbjct: 144 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEEH----GAAAILLGHTRDDQAETVLL 199 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM + + RPFLR R+ R + +++ +DP NTD Sbjct: 200 GLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDP 255 Query: 198 RFERVRVR 205 + R R+R Sbjct: 256 AYTRSRLR 263 >gi|313848263|emb|CBY17264.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|328914942|gb|AEB55775.1| MesJ/Ycf62 family protein, putative [Chlamydophila psittaci 6BC] Length = 297 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 19/188 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--- 79 L+A+SGGSDS+ LL L +S G + F+A+ VD+ RE++ E + C Sbjct: 6 LLALSGGSDSLFLLYLL------KSRG-VSFTAVHVDYGWRESSYREAEELKLRCQEEGV 58 Query: 80 -LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H K SK P+ AAR RY L + + N I AH +DQ ETV Sbjct: 59 PLIVNHVPSKDKTSKDPEN----AARRYRYELFYKICREENLAGIFLAHHANDQAETVLK 114 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R A G L GM Y+ + + RP L ++ + L NI + D +NTD+ Sbjct: 115 RVLEG-AHLG-NLKGMTSEASYN-GIPLLRPLLHIPKQILIHTLDAENIPYVHDVTNTDE 171 Query: 198 RFERVRVR 205 R+ R R+R Sbjct: 172 RYLRARMR 179 >gi|227514335|ref|ZP_03944384.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931] gi|227087307|gb|EEI22619.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931] Length = 449 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 12/206 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ + + V+H Sbjct: 8 MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPK---LKRPRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + ++W ED +N D R RVR Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202 >gi|315274600|ref|ZP_07869470.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120] gi|313615770|gb|EFR89028.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120] Length = 648 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A E + V C + Sbjct: 24 LLVAVSGGPDSLALL---HFLWESKLIPKEAISVAHLNHHLRENAAKEQQLVEIFCKQHN 80 Query: 82 I---AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V K ++ Q G+ AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 LPFYTEEVDVKKQAQVLQKGIEETARIVRYDFFEKIMAEQNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + ++++ D SNT Sbjct: 141 RLVR--GSSSIGWSGIQPKREVKGGYAI-RPFLPITKAEIIEYAHKHSLAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|296274393|ref|YP_003657024.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299] gi|296098567|gb|ADG94517.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299] Length = 324 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81 L+A SGG DS L L + I F V++ RE +KDEV Y ++ ++ Sbjct: 12 LLAFSGGIDSSALFFLLLN-------ENIPFDIAIVNYNQREQSKDEVAYAKELANKYNK 64 Query: 82 ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V++ + AR+ RY + K + ++TAH +D+LE M+ Sbjct: 65 KCFLKEAVLT-----NNSNFEKEARDIRYDFFDKIIKEYDYDTLITAHQLNDKLEWFMMQ 119 Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 KG GL G+ + D N I RP L +E+++ FL + N + D SN Sbjct: 120 -----LSKGAGLVELIGLEEKTQKD-NYVIYRPLLELSKEELQIFLQKNNHKYFIDESNY 173 Query: 196 DDRFERVRVRR-FVRDI 211 D++++R R+ FV ++ Sbjct: 174 DEKYKRNYFRKNFVNEL 190 >gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396] gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Hahella chejuensis KCTC 2396] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 81/329 (24%), Positives = 130/329 (39%), Gaps = 49/329 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +A SGG DS LL A + R++ K + AI V H L A + C L Sbjct: 31 LFIAYSGGLDSSVLLHA-----ARRAWPAKTQIEAIHVHHGLSPNADAWAEHCQKECQSL 85 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYAL----ISEHAKTINATLIMTAHTFDDQLETVY 136 +A L AAAREARY + +SEHA + ++ H +DQ ET+ Sbjct: 86 DVACHAHHVSVMAVGDSLEAAAREARYRVFERYLSEHADAV----LLQGHHQNDQAETIL 141 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + + KG+ T+ + + RP L R ++ + + +SW ED SN D Sbjct: 142 FRLLKGHGVKGLAGIPRQRTLGKGI---LRRPLLDFTRLELEALAQRWGLSWVEDESNVD 198 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI------- 249 F+R +L+ + + + + NAVAM+ + S Sbjct: 199 AVFDRN--------------FLRNEILRPMSARWRNAVAMIAETGRRMSEASSLLDELAE 244 Query: 250 IAISQDILNIDSTLLFYL-----------LRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 I + + ++ D L L LR G S + ML + + Sbjct: 245 IDLQGETVSADELELAVLSGLSPHRRKNVLRYWLQAAGLTPSESDLAEILAQMLHAEGSR 304 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327 + C S+G V+ R L++T A+ P+ Sbjct: 305 QPCYSLGESVLRRHDGKLYLTEAIDAPPS 333 >gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4] gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4] Length = 665 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 17/204 (8%) Query: 22 ILVAVSGGSDSMGLLIALHS-VLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77 +++ VSGGSDSM LL L + + + S K+K + I++DH + +++ Y+S + Sbjct: 173 LVIGVSGGSDSMVLLYLLKNWCIGENSANVNRKLKITVITIDHKMTNPVAEDIPYISKII 232 Query: 78 SRL----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++L +I H VV + + + + R R ++ + LI Sbjct: 233 NQLINNDNNSNFIKIKHKVVEIDEQRCKQQV--SLRNQRIEILMSESVGNGNNLIFYGTN 290 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ+ET R ++ G+ I ++ + RP L + +I F +R+I Sbjct: 291 LNDQMETFIQRINKNSGLDGLAAMTKITKISNTHSVLLVRPLLDFSKLEILDFCSERSIQ 350 Query: 188 WCEDPSNTDD-RFERVRVRRFVRD 210 + DP+N D + R + R +RD Sbjct: 351 YFNDPTNDDPVSYSRNKTRHQLRD 374 >gi|160916165|ref|ZP_02078372.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991] gi|158431889|gb|EDP10178.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991] Length = 404 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL R G + V++ RE+A +++ V D C + I Sbjct: 11 IIGVSGGPDSMALLDMC------RRHG-VSMVVAHVNYQKRESAARDMQIVQDYCKQYGI 63 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--SQ 140 A V +N + A AR+ RYA + +A ++ AH DD +ET M+ ++ Sbjct: 64 A-CEVYMQNKQCTYNFQAFARDVRYAFYRSLCEIYHAQGVLLAHQMDDHIETYLMQKETK 122 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + G+ G+ L + + RP L ++ + + Q + + D SN D + Sbjct: 123 RLGSYYGIRKKGIV------LGVKVYRPLLTKSKKQLEEYCAQHGVEYGIDESNLSDDYA 176 Query: 201 RVRVRRFVRD 210 R R+R V D Sbjct: 177 RNRMRHHVVD 186 >gi|29347003|ref|NP_810506.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482] gi|61216643|sp|Q8A7D1|TILS_BACTN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29338901|gb|AAO76700.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482] Length = 426 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA+SGG+DS+ LL LH+ F H E + + R+V +C Sbjct: 22 LLVALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDERFVRQLCQKYG 75 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL I + ++ + + AARE RY + + A +I AH DD +ET+ Sbjct: 76 IRLHITDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLF 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L Q + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQDFVTDSTNLED 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|156935294|ref|YP_001439210.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894] gi|156533548|gb|ABU78374.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894] Length = 434 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 13/204 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LVA SGG DS + LH ++ R + +++ AI V H + A + C R Sbjct: 14 QLLVAYSGGLDST---VLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQAHCHR 70 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + + ++ GL A AR+ARY A + ++TA +DQ ET+ + Sbjct: 71 WQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLNDQCETLLLAL 128 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G L+ M + + ++ + RP L R + ++ + + W +D SN DDRF Sbjct: 129 KRGSGPAG--LAAMPAELPFADSV-LLRPLLNTPRAQLEAWASRHQLVWIDDESNEDDRF 185 Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223 + R F+R L AL + F Sbjct: 186 D----RNFLRLHILPALEARWPHF 205 >gi|26988340|ref|NP_743765.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida KT2440] gi|61216636|sp|Q88MG3|TILS_PSEPK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24983090|gb|AAN67229.1|AE016350_2 cell cycle protein MesJ, putative [Pseudomonas putida KT2440] Length = 427 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R+ AI + H L+ A + +C + Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAR+ARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASLEQAARDARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRLLR-- 127 Query: 144 AEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL G+ L +L RP L C R+ ++ + + ++W EDPSN D +F Sbjct: 128 ---GAGLRGLAAMPGQRALGQGSL--VRPLLACSRQHLQEYAQAQGLTWIEDPSNVDTQF 182 Query: 200 ERVRVRRFV 208 R +R V Sbjct: 183 ARNYLRGEV 191 >gi|329943107|ref|ZP_08291881.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10] gi|332287689|ref|YP_004422590.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC] gi|325506432|gb|ADZ18070.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC] gi|328814654|gb|EGF84644.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10] Length = 317 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 19/199 (9%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F +L L+A+SGGSDS+ LL L S + F+A+ VD+ RE++ E Sbjct: 15 FFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAE 67 Query: 72 YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C L + H K SK P+ AAR RY L + + N I AH Sbjct: 68 ELKLRCQEEGVPLIVNHVPSKDKTSKDPEN----AARRYRYELFYKICREENLAGIFLAH 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQ ETV R A G L GM Y+ + + RP L ++ + L NI Sbjct: 124 HANDQAETVLKRVLEG-AHLG-NLKGMTSEASYN-GIPLLRPLLHIPKQILIHTLDAENI 180 Query: 187 SWCEDPSNTDDRFERVRVR 205 + D +NTD+R+ R R+R Sbjct: 181 PYVHDVTNTDERYLRARMR 199 >gi|309787133|ref|ZP_07681745.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617] gi|308924711|gb|EFP70206.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617] Length = 415 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +A SGG DS + LH ++ R+ + AI V H L A V + +VC + ++ Sbjct: 1 MAFSGGLDST---VLLHQLVQWRTENPGVVLRAIHVHHGLSANADAWVTHCENVCQQWQV 57 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 58 PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G LS M + + I RP L R ++ + L + W ED SN DD ++R Sbjct: 116 SGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDESNQDDSYDR 171 >gi|255073925|ref|XP_002500637.1| predicted protein [Micromonas sp. RCC299] gi|226515900|gb|ACO61895.1| predicted protein [Micromonas sp. RCC299] Length = 204 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 10/184 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG DS+ LL H ++ R + + +H R +++E +V D+ ++L Sbjct: 23 VVLCVSGGVDSVALL---HLMVELRQEWALDLHILHFNHGKRAESREEEAFVKDLGAKLG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + +G A AR R + + +I+ H DDQ ETV M+ R Sbjct: 80 VEVHVRRPTKAFDTSGFQAKARAWRRDEAEKLLDAVAGQVILQGHHADDQTETVLMKMMR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G +S + N RP L ++++R +L R + W ED SN D F R Sbjct: 140 -----GCHVSNIAGMSHRAGN--YGRPLLDVSKDELRRYLTSRALEWREDASNADVAFLR 192 Query: 202 VRVR 205 RVR Sbjct: 193 NRVR 196 >gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14] gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14] Length = 438 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%) Query: 98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 L AAREARY ++++H +++TA DDQ+ET + +R G+ M Sbjct: 100 LEQAAREARYNILAQHVNM--GDMLLTAQHSDDQIETFLLALKRGSGPAGLAAMPMILPF 157 Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++L RP L R DI + L+ +SW ED SN D+R++R +R + Sbjct: 158 AKGMHL---RPLLNITRADIEQYGLEHKLSWVEDESNQDERYDRNFIRHQI 205 >gi|160947239|ref|ZP_02094406.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270] gi|158446373|gb|EDP23368.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270] Length = 457 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 30/196 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM +L + + K+ +H LR+ A + ++V C + Sbjct: 19 VLLAVSGGKDSMIMLDLFNYFKYEL---KLNLVVCHFNHSLRDDADRDEKFVKTQCEKYG 75 Query: 82 IA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V+ + N + + AR RY E + N I TAH +D ETV Sbjct: 76 LKFYSKKEDVLLYSN-ENKLSTEEGARFLRYKFFDEVKRIENLEYIATAHNKNDLAETVI 134 Query: 137 MRSQRDYAEKGMGLSGMC-------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 MR R G G++G+ D I RP L R++I ++ + NI + Sbjct: 135 MRILR-----GTGINGLIGIQSERGDLI---------RPILNFSRDEIEKYIEENNIPFV 180 Query: 190 EDPSNTDDRFERVRVR 205 ED +N ++ + R ++R Sbjct: 181 EDKTNFEELYLRNKIR 196 >gi|159040239|ref|YP_001539492.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205] gi|189035970|sp|A8M8I3|TILS_SALAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157919074|gb|ABW00502.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205] Length = 333 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 4/154 (2%) Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHA 114 ++VDH L+E + V D +A + S+ G AAAREARY ++E A Sbjct: 59 VTVDHGLQEGSARRATAVVDWAHTAGLAPVEAIRVDVSERPGGPEAAAREARYQALTEAA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + A ++T HT DDQ ETV + R + GL+GM T + + RP L R Sbjct: 119 GRLGAAALLTGHTRDDQAETVLLALARGAGPR--GLAGM-PTRRWLGEALLLRPLLEVSR 175 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 E R+ ++ DP NTD + R RVR V Sbjct: 176 EQTRAACTALGLAPWTDPHNTDPAYARARVRSEV 209 >gi|207855754|ref|YP_002242405.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707557|emb|CAR31831.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 403 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110 + AI + H L A+ VR+ VC+R ++ V + G+ A AREARY Sbjct: 16 VTLRAIHIHHGLSPHAESWVRHCETVCARWQVPLVVERVTLADNGLGIEAHAREARYRAF 75 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 ++ + ++ TA DDQ ET + +R G LS M + + L + RP L Sbjct: 76 AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 R R+ + + ++ + W ED SN DD ++R Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161 >gi|301309867|ref|ZP_07215806.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3] gi|300831441|gb|EFK62072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3] Length = 438 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 98/362 (27%), Positives = 153/362 (42%), Gaps = 74/362 (20%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 I ++R ++ R L +LV +SGG+DS+ LL L ++ + I++ HC Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 LR E+ +DE + + L +I +S+ K + AARE RYA E Sbjct: 52 FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + + I AH DD +ETV M R G G+ GM + N +I RP L Sbjct: 110 MRERLGGQAIAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 REDI ++L + ++ D +N D F R+ V + +I+ A + + L Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273 + A I Y+ R + +S D L+I + T+L+ LL+ VS Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332 I PG LF S R++ DR ++LWIT + T +L P Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEERTFVLDP 320 Query: 333 EE 334 E+ Sbjct: 321 EK 322 >gi|254432047|ref|ZP_05045750.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001] gi|197626500|gb|EDY39059.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001] Length = 359 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 17/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L+ L + R DH R + D+ R + Sbjct: 38 LLVAVSGGQDSMALVALLRDL---RRLHGWTLHLWHGDHGWRPASGDQARQLQAWAEAEG 94 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S+ W+ A+AR RYA + A + AT ++T HT D+ ET R Sbjct: 95 LPFSLARWEQPVQDE---ASARSWRYASLLARATALGATRVVTGHTASDRAETFLFNLAR 151 Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +G+G L + T++ ++RP L R D + D N+D Sbjct: 152 GSHRRGLGSLRPLRPLGGTVM------LARPLLGFGRADTARLCGALQLPVWPDAGNSDP 205 Query: 198 RFERVRVRRFVRDIDLHALY 217 RF R R+R V + L AL+ Sbjct: 206 RFSRNRLRGEVLPV-LEALH 224 >gi|256852015|ref|ZP_05557402.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 27-2-CHN] gi|260661416|ref|ZP_05862329.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 115-3-CHN] gi|282933687|ref|ZP_06339045.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|297205113|ref|ZP_06922509.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16] gi|256615427|gb|EEU20617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 27-2-CHN] gi|260547871|gb|EEX23848.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 115-3-CHN] gi|281302177|gb|EFA94421.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|297149691|gb|EFH29988.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16] Length = 412 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA S G DS+ L+ L + ++ DH +R+ + E + C + Sbjct: 20 IIVACSAGPDSLALVDMLKN-------WPLRLIVAHFDHQIRQDSYLETELLEQYCKQNE 72 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W+N++ +T AAAR+ARY+ + AK A ++TAH DD LE + ++ R Sbjct: 73 LPLYVKKWENNQNKTE--AAARKARYSFLLALAKEKQADYLLTAHHGDDYLENIILKLIR 130 Query: 142 --DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 D AE + G + + + RP L + ++ +LL +++++ D +N + Sbjct: 131 SGDPAEMSSLQAVGQMEGVK------LVRPLLYYSKSELTKYLLDKHLAFITDETNLTNE 184 Query: 199 FERVRVRR 206 R R+R Sbjct: 185 NLRNRIRH 192 >gi|229825875|ref|ZP_04451944.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC 49176] gi|229789895|gb|EEP26009.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC 49176] Length = 477 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 57/321 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I+ VSGG+DS+ LL+ L +L+ + A+ ++H +R E A+DE +V +C + Sbjct: 36 IVAGVSGGADSVCLLLVLKDILNPENI-----VAVHINHGIRGEEAARDE-EFVKKLCEK 89 Query: 80 ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I H + + K + A R RY + E + NA I AH +D ET Sbjct: 90 YNICLEIRHLSIPEYSKKHKISEEEAGRILRYEVFEEIRQEKNADKIAVAHNMNDTAETF 149 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ T + N I RP ++ R++I ++ D +N Sbjct: 150 LLNLSR-----GSGITGL--TGIKISNSRIIRPLIKTSRDEIEKIAEYYGEAFITDSTNN 202 Query: 196 DDRFERVRVR------------RFVRDIDLHALYL-------------KMKKFQDLR--V 228 + R R+R + VR I+ A L KK+ D + + Sbjct: 203 SLIYARNRIRNKVLPELSQVNEQAVRHINEAADKLGKIEGYLLRESEKAYKKYVDAKETL 262 Query: 229 KVNNAV----AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-- 282 + NA+ A+LI + L R++ ++ +I S + YL + + G +I+LP Sbjct: 263 LIKNAITEIDAVLIEEVL---HRALTEVAGKARDIGSIHISYLNELFSKQVGREINLPYE 319 Query: 283 --GYRSMERVMLFLKSGKRGC 301 YR E V L + K Sbjct: 320 IRAYRDYEGVRLISANNKENA 340 >gi|304312484|ref|YP_003812082.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1] gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1] Length = 463 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 8/180 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV SGG DS +L+ L S +S + A+ V+H L A ++ D+C Sbjct: 22 LLVGFSGGLDST-VLLYLARRWSLQS--SVPIVAVHVNHQLSAHAFAWQQHCVDLCEAWG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IA + G+ +AAR ARY + AK + L+ H DDQ+ET ++R R Sbjct: 79 IALHCEAVHVDAHGVGVESAARAARYQVFQRLAKPSDVLLL--GHHRDDQVETFFLRLMR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +GL+ M D + L I RP L + + F + +W ED SN DR++R Sbjct: 137 --GSGVLGLASMDDVSEWQ-GLCIVRPLLGLSKSVLHEFAKSQQWTWVEDESNQSDRYDR 193 >gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891] gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891] Length = 435 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++ +SGG DS +L L ++ A+ V H L + A C L Sbjct: 21 IVLGLSGGLDSRVMLELLAQYAQQY---RVDCLAVHVHHGLSDNADQWAEQCQHWCQSLN 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + +AREARY + ++ + L++T DDQLET + +R Sbjct: 78 VQLVVEKVSLDIEGRSIEESAREARYNALRKYLSS--GDLLLTGQHADDQLETFLLALKR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG LS M + + + I RP L R++I F ++ W ED SN D RFER Sbjct: 136 GSGPKG--LSSMAAVMPF-ASAQIVRPLLSVTRQEIEEFAQSLDLEWVEDESNQDQRFER 192 Query: 202 VRVR 205 +R Sbjct: 193 NFIR 196 >gi|220911090|ref|YP_002486399.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6] gi|219857968|gb|ACL38310.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6] Length = 351 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/198 (34%), Positives = 88/198 (44%), Gaps = 19/198 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVS 74 YPAH+LVA SGG DSM L A+ S + R + A+ VDH L+E + R + Sbjct: 11 YPAHVLVACSGGPDSM-ALAAVASYFARRGSIDSHPVTVGAVVVDHQLQEGSG---RVAA 66 Query: 75 DVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 D LR H+V G AAAREAR+A + A A I+ HT Sbjct: 67 DTAGALRELGLAPVDVHTVTVAGAG---MGPEAAAREARHAALEAAAADQGAGAILLGHT 123 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ E V + R + L+GM T + + RPFL RR D + Sbjct: 124 LDDQAEQVLLGLARGSGTR--SLAGMRPTRAGAGSAVLLRPFLGLRRADTEEICEVEELD 181 Query: 188 WCEDPSNTDDRFERVRVR 205 DP+NTD F R R R Sbjct: 182 PWHDPTNTDPAFARSRTR 199 >gi|325856881|ref|ZP_08172379.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A] gi|325483254|gb|EGC86231.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A] Length = 456 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL+ L + G + A+ + LR E+ +DE +Y ++C R Sbjct: 22 LVALSGGADSVCLLLCL------KELG-YRIEAVHCNFHLRGEESQRDE-QYCQELCVRE 73 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I AH ++ + + AAR RY + +T+ A + T H +D +ET+ Sbjct: 74 NIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVCTGHHKEDSVETIL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL+G+ + + RP L R++I +L R++S+ D +N Sbjct: 134 INLVR-----GTGLNGLMG--IRPRKGGVVRPLLCVTRQEIEQYLRSRSVSFVTDSTNLV 186 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ 254 D R ++R + + + ++ VN+AV LT H+ + AI + Sbjct: 187 DDVVRNKIRLNI-----------LPQLAEINPSVNDAV-------LTAANHLSEVDAIVR 228 Query: 255 DILNI 259 D LN+ Sbjct: 229 DSLNM 233 >gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1] Length = 167 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%) Query: 22 ILVAVSGGSDSMG-LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS+ L+A H V R A++VDH LR + E V + Sbjct: 25 LAVAVSGGADSLAATLLAAHWVHERRG----TLVALTVDHRLRPNSTAEAVLVGQWLANH 80 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I H ++ W KP + + AR ARY L+ ++ + ++ AH DDQ ET +R Sbjct: 81 GIEHHILPWLGDKPVSDIQGRARAARYGLLEQYCRQAGILHLLLAHHRDDQAETFLLRLA 140 Query: 141 RDYAEKGM 148 R G+ Sbjct: 141 RGSGVDGL 148 >gi|313668289|ref|YP_004048573.1| hypothetical protein NLA_9780 [Neisseria lactamica ST-640] gi|313005751|emb|CBN87205.1| hypothetical protein NLA_9780 [Neisseria lactamica 020-06] Length = 445 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSV---VLLHLLVRAGKKGGFIPEAVHIHHGLSPRADDWADFCQNYCDMLGVR 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VR 205 R Sbjct: 206 FR 207 >gi|229528754|ref|ZP_04418144.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)] gi|229332528|gb|EEN98014.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)] Length = 440 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|147674336|ref|YP_001217758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|153817074|ref|ZP_01969741.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457] gi|227082366|ref|YP_002810917.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2] gi|229507683|ref|ZP_04397188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286] gi|262167735|ref|ZP_06035437.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27] gi|298500383|ref|ZP_07010188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757] gi|172047611|sp|A5F623|TILS_VIBC3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|254789054|sp|C3LPP6|TILS_VIBCM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|126512342|gb|EAZ74936.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457] gi|146316219|gb|ABQ20758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|227010254|gb|ACP06466.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2] gi|227014138|gb|ACP10348.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|229355188|gb|EEO20109.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286] gi|262023800|gb|EEY42499.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27] gi|297541076|gb|EFH77130.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757] Length = 440 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023] Length = 453 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS LL H + S + K + ++H LRE A+ E V C Sbjct: 24 LLVAVSGGPDSFALL---HFLWSAKLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + K Q G+ AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + + D SNT Sbjct: 141 RLVR--GSSSIGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYANTHTLPYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|327314588|ref|YP_004330025.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289] gi|326945281|gb|AEA21166.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289] Length = 456 Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL+ L + G + A+ + LR E+ +DE +Y ++C R Sbjct: 22 LVALSGGADSVCLLLCL------KELG-YRIEAVHCNFHLRGEESQRDE-QYCQELCVRE 73 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I AH ++ + + AAR RY + +T+ A + T H +D +ET+ Sbjct: 74 NIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVCTGHHKEDSVETIL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL+G+ + + RP L R++I +L R++S+ D +N Sbjct: 134 INLVR-----GTGLNGLMG--IRPRKGGVVRPLLCVTRQEIEQYLRSRSVSFVTDSTNLV 186 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ 254 D R ++R + + + ++ VN+AV LT H+ + AI + Sbjct: 187 DDVVRNKIRLNI-----------LPQLAEINPSVNDAV-------LTAANHLSEVDAIVR 228 Query: 255 DILNI 259 D LN+ Sbjct: 229 DSLNM 233 >gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator MP104C] gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 470 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LV VSGG DS+ LL L+ + R+ I + ++H LR A+ + RYV + + Sbjct: 23 VLVGVSGGPDSVALLDVLYGL---RAVLGISITVAHLNHRLRGAEAEADARYVRKLAEKF 79 Query: 81 RIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V +++ ++ + + AARE RY + A+ A + H DDQ ET+ Sbjct: 80 GLPCIVEECDVPTFRKAE-RLSIQTAARELRYEFFARAARETGARRVALGHHADDQAETI 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G G +G+ I L+I RP L RR +I ++ R + DPSN Sbjct: 139 LHHFLR-----GTGPAGLAG-IAPVRGLFI-RPLLGIRRREIEAYCRARGLDPRLDPSNL 191 Query: 196 DDRFERVRVR 205 D + R R+R Sbjct: 192 DPVYTRNRLR 201 >gi|153812536|ref|ZP_01965204.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174] gi|149831461|gb|EDM86549.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174] Length = 471 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 28/223 (12%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ ++ V+ F+ L + I++ VSGG DSM +L L+ + + FG + + Sbjct: 1 MYKDTLQKVKRFMTETGMLQNCSEIILGVSGGPDSMTMLHILNGLRDE--FG-YRLRVVH 57 Query: 58 VDHCLR--ETAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREAR 106 V+H +R E +D+ + V +CS +I +V +SWK + G R Sbjct: 58 VNHGIRGKEALRDQ-QMVEKICSEWKIPCAVYNYDVPALALSWKMGTEEAG--RKVRRIA 114 Query: 107 YALISEHAKTINATL-IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 + E+A I + + AH +D ET+ R G G+ G+C L LN I Sbjct: 115 FEKEKENAVAIPEQVRVALAHNQNDMAETMLHHLAR-----GTGIRGLCS--LKPLNGEI 167 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 RP L R +I +++ + +I D SN +D + R R+RR + Sbjct: 168 IRPLLCLERSEIVNYVEENSIQTVLDSSNMEDDYTRNRIRRHI 210 >gi|259501962|ref|ZP_05744864.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus antri DSM 16041] gi|259170139|gb|EEW54634.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus antri DSM 16041] Length = 467 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 15/208 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 F ++ RFF + ++VAVS G DSM +L++L + L + + + V+H Sbjct: 15 QFKRHLQGGRFFDKR----DRVVVAVSAGVDSM-VLLSLVTRLP--APLRPTVTVAHVNH 67 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR + E Y+ C + V W +++ PQTG+ AAR RY +E + Sbjct: 68 ELRRQSWQEEEYLRQYCRAHDLPLLVKHWPRSAHPQTGIEEAARRFRYHFFAEVMAARQS 127 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDI 177 +++TAH +D ET+ M+ R G LS + + + + RP L +E + Sbjct: 128 PILLTAHHQNDLAETILMKLVR-----GGQLSQLVGINAVRPFTGGRLIRPLLPFSKEQL 182 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205 R++ + I W ED +N D R R R Sbjct: 183 RAYAVAAGIRWYEDTTNQDLTISRNRYR 210 >gi|307825179|ref|ZP_07655399.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96] gi|307733635|gb|EFO04492.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96] Length = 451 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 10/186 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL S+ + K K +A+ V H L+ A+ ++ + + Sbjct: 36 IAYSGGVDSHVLLHCCASI----THLKDKLTAVYVHHGLQAEAESWAKHCEKTAKDVGVE 91 Query: 84 HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + N+ P AAR ARYA + K +A L+ A +DQLETV ++ R Sbjct: 92 FLTLRVNANAAPGESPEEAARNARYAALKSLIKADDALLL--AQHREDQLETVLLQLFRG 149 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G LSGM + + + + + RP L ++ I + +SW EDPSN + ++R Sbjct: 150 SGLRG--LSGMSERMAFGAGVML-RPLLNTPKQAISDYAHAHQLSWVEDPSNQSNDYDRN 206 Query: 203 RVRRFV 208 +R V Sbjct: 207 FLRNAV 212 >gi|257882585|ref|ZP_05662238.1| PP-loop family protein [Enterococcus faecium 1,231,502] gi|293563198|ref|ZP_06677654.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162] gi|293570120|ref|ZP_06681200.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071] gi|294618633|ref|ZP_06698172.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679] gi|294623709|ref|ZP_06702542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317] gi|257818243|gb|EEV45571.1| PP-loop family protein [Enterococcus faecium 1,231,502] gi|291587492|gb|EFF19376.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071] gi|291595152|gb|EFF26490.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679] gi|291596924|gb|EFF28142.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317] gi|291604848|gb|EFF34326.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162] Length = 484 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 34 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 91 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + I RP L +ED+ ++ + + + ED +N Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 206 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 207 QRNRLRHLV 215 >gi|167039445|ref|YP_001662430.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514] gi|300915475|ref|ZP_07132788.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561] gi|307725230|ref|YP_003904981.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513] gi|166853685|gb|ABY92094.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514] gi|300888535|gb|EFK83684.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561] gi|307582291|gb|ADN55690.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513] Length = 458 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E K + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + RE+I +L ++++ D +N Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|50086047|ref|YP_047557.1| cell cycle protein [Acinetobacter sp. ADP1] gi|61216503|sp|Q6F880|TILS_ACIAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49532023|emb|CAG69735.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ADP1] Length = 459 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R +++ +PA L+ SGG DSM LL+ L S L K AI +DH L+ +++ Sbjct: 19 RLLIQAQQFPADTVFLIGCSGGMDSM-LLLHLMSELFPH-----KVRAIYIDHQLQSSSR 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKP---QTG-LMAAAREARYALISEHAKTINATLIM 123 +V + + I ++ +P TG L AREARYA H K+ N L++ Sbjct: 73 AWGVFVQNFAQQSHIPFTI------QPVIVDTGNLENQAREARYAAFESHLKS-NEVLVL 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DQ ETV +R KG+ G I N+ RP L R+ I ++ Sbjct: 126 -AHHQQDQTETVLLRLLSGSGVKGL---GAMKEIEQKKNICCWRPMLSVSRQQIEHWVEH 181 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 I + +D +N D ++R R V Sbjct: 182 LKIPYIQDLTNFDTTYDRAWCRETV 206 >gi|256751848|ref|ZP_05492720.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256749255|gb|EEU62287.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 458 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E K + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + RE+I +L ++++ D +N Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|16799328|ref|NP_469596.1| hypothetical protein lin0251 [Listeria innocua Clip11262] gi|61216704|sp|Q92F56|TILS_LISIN RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|16412680|emb|CAC95484.1| fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria innocua Clip11262] Length = 648 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS LL H + S K + ++H LRE A+ E V C Sbjct: 24 LLVAVSGGPDSFALL---HFLWSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + K Q G+ AR RY + N ++ AH DDQ+ET+ M Sbjct: 81 IPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + + + D SNT Sbjct: 141 RLVR--GSSSIGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYATKHALPYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|312623036|ref|YP_004024649.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203503|gb|ADQ46830.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 456 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL +L + + + ++H LR A D+ ++V ++C R Sbjct: 23 VLIGCSGGVDSMVLL---DCILRLKDKYNLDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V K + GL A R ARY+ E A+ +N I+ H +D +ET ++ Sbjct: 80 IKCITRKVDVAKLKKEKGLSEEEAGRNARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ + D+ I+RP + RE+I + ++ + D +N Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---IARPLINISREEIEEYAKLNSVPFVVDKTNFS 191 Query: 197 DRFERVRVR 205 +++R VR Sbjct: 192 LKYKRNIVR 200 >gi|69245448|ref|ZP_00603443.1| PP-loop [Enterococcus faecium DO] gi|257879859|ref|ZP_05659512.1| PP-loop family protein [Enterococcus faecium 1,230,933] gi|257891700|ref|ZP_05671353.1| PP-loop family protein [Enterococcus faecium 1,231,410] gi|260559532|ref|ZP_05831713.1| pp-loop family protein [Enterococcus faecium C68] gi|314938210|ref|ZP_07845510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04] gi|314943105|ref|ZP_07849904.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C] gi|314949302|ref|ZP_07852645.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082] gi|314952235|ref|ZP_07855250.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A] gi|314992093|ref|ZP_07857543.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B] gi|314996276|ref|ZP_07861332.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01] gi|68195830|gb|EAN10266.1| PP-loop [Enterococcus faecium DO] gi|257814087|gb|EEV42845.1| PP-loop family protein [Enterococcus faecium 1,230,933] gi|257828060|gb|EEV54686.1| PP-loop family protein [Enterococcus faecium 1,231,410] gi|260074631|gb|EEW62952.1| pp-loop family protein [Enterococcus faecium C68] gi|313589520|gb|EFR68365.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01] gi|313593307|gb|EFR72152.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B] gi|313595630|gb|EFR74475.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A] gi|313598164|gb|EFR77009.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C] gi|313642406|gb|EFS06986.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04] gi|313644308|gb|EFS08888.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082] Length = 481 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 31 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 87 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 88 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 146 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + I RP L +ED+ ++ + + + ED +N Sbjct: 147 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 203 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 204 QRNRLRHLV 212 >gi|325140361|gb|EGC62883.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis CU385] Length = 445 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VRR 206 R Sbjct: 206 FRH 208 >gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681] gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681] Length = 482 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 14/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 I+VAVSGG DS+ LL LH + ++ V H R D E V ++ +L Sbjct: 29 IVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAEEVRNIARKL 86 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + G AARE RY + + A A I AH DDQ ETV Sbjct: 87 ELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMAHHGDDQAETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G G +G+ L + N+ + RP LR + D+ F N+S+ D +N Sbjct: 147 LHLLR-----GSGPAGLAGMRLARREKNVQLIRPLLRMYKADLIEFCNFYNLSYVTDSTN 201 Query: 195 TDDRFERVRVR 205 ++ R +R Sbjct: 202 LSSKYRRNAIR 212 >gi|283781738|ref|YP_003372493.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068] gi|283440191|gb|ADB18633.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068] Length = 306 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ AAAREARY ++ A+ ++T HT +DQLETV R R G++GM Sbjct: 72 GMEAAAREARYHFFTQAAEARGCRYVITGHTENDQLETVLFRMLRGTGIA--GIAGMPRA 129 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + RP L R ++ +L + +C+D +N +D F R R+R V Sbjct: 130 RTLSPAVTLLRPMLSITRSEVLEYLASLDQPYCDDATNDEDTFTRNRIRNLV 181 >gi|167036726|ref|YP_001664304.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115148|ref|YP_004185307.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855560|gb|ABY93968.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928239|gb|ADV78924.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 458 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E K + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + RE+I +L ++++ D +N Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|313500224|gb|ADR61590.1| TRNA(Ile)-lysidine synthase [Pseudomonas putida BIRD-1] Length = 427 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R+ AI + H L+ A + +C + Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAR+ARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASLEQAARDARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ T+ + RP L C R+ ++ + + ++W EDPSN D +F R Sbjct: 130 GLRGLAAMPGQRTLGQGR---LVRPLLACSRQHLQDYAQAQGLTWIEDPSNLDIQFARNY 186 Query: 204 VRRFV 208 +R V Sbjct: 187 LRGEV 191 >gi|77358707|ref|YP_338292.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|77358709|ref|YP_338291.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|218768194|ref|YP_002342706.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491] gi|61216742|sp|Q9JUE9|TILS_NEIMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|73919876|sp|Q4W568|TILS_NEIMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|66731914|gb|AAY52148.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|66731931|gb|AAY52164.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|121052202|emb|CAM08525.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491] gi|325134335|gb|EGC56981.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M13399] gi|325200183|gb|ADY95638.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis H44/76] gi|325206037|gb|ADZ01490.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M04-240196] Length = 426 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|325144442|gb|EGC66742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240013] Length = 445 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VRR 206 R Sbjct: 206 FRH 208 >gi|187933472|ref|YP_001884417.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund 17B] gi|187721625|gb|ACD22846.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund 17B] Length = 468 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 23/254 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 IL+A+SGG DS+ LL L + R I+ A ++H LR + KDE +V + C Sbjct: 21 ILIALSGGPDSLCLLNMLKEL---REELDIEIGAAHLNHLLRGDDAFKDE-EFVINTCKE 76 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V ++ + + + A R RY E K I TAH +DQ ET+ Sbjct: 77 MNIPCYVKRVDINKYSKEHRLSSELAGRNVRYDFFDEILKKEGFNKIATAHNANDQAETI 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G GL G+ +Y N I RP L R ++ ++ ++ ++ D +N Sbjct: 137 IFRMMR-----GTGLEGLGGIKVYRENKII-RPILCLTRTEVEKYIEEKKLNPRIDKTN- 189 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 FE++ R +R L + + F + VK N +++LI K + R I + Sbjct: 190 ---FEKIYNRNKIR---LDIIPYIQENFNEDIVKTLNRMSLLIQKDNALIERLCIKAYNE 243 Query: 256 ILNIDSTLLFYLLR 269 D+ F++L+ Sbjct: 244 YCKKDNDSKFFILK 257 >gi|167761978|ref|ZP_02434105.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC 43183] gi|167700210|gb|EDS16789.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC 43183] Length = 431 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 18/197 (9%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L+ P +LVA+SGG+DS+ LL L + D F E+ +DE + Sbjct: 13 KQLLQPTDKVLVALSGGADSVALLRLLQASGYDCEAAHCNFHLRGA-----ESDRDEA-F 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C + ++ V + ++ + AARE RY E + INA I AH Sbjct: 67 VRQLCVKQQVPLHTVHFDTARTAEERHISIEMAARELRYGWFEEIRQKINADAIAVAHHQ 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ + R G G++G+ + N I RP L R++I S+L + + Sbjct: 127 DDSVETLLLNLIR-----GTGINGL--RGIRPKNGHIVRPLLCLERKEIISYLNRIGQDY 179 Query: 189 CEDPSNTDDRFERVRVR 205 D +N D + R ++R Sbjct: 180 VTDSTNLQDEYTRNKIR 196 >gi|261211361|ref|ZP_05925649.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341] gi|260839316|gb|EEX65942.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341] Length = 440 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 9/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS +L+AL + D FG +A+ V H L A ++ C + Sbjct: 20 LLLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQLCCREVG 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A + + + + AREARY +S+H + TL++ DDQLET + + Sbjct: 77 MACQIEYVQLDLASGESIEKMAREARYQALSQHVGS--DTLLLLGQHADDQLETFLLALK 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+ L RP L R+ I ++ Q ++W D SN D R+E Sbjct: 135 RGSGPKGLAAMAAYSPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVTDESNADTRYE 191 Query: 201 RVRVRRFV 208 R +R V Sbjct: 192 RNFLRHQV 199 >gi|158319482|ref|YP_001511989.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs] gi|158139681|gb|ABW17993.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs] Length = 463 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+VA+SGG DS+ LL H++ R ++ ++H R A+ + +YV+++C L Sbjct: 21 IIVAISGGPDSVCLL---HNLYQLREEYNLELYGAHLNHNFRGIDAQVDAQYVANLCEEL 77 Query: 81 RIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + S + GL + A R RY E A+ + A I AH +DQ ETV Sbjct: 78 NILCFIKSMDVPQYAKEKGLSSEEAGRILRYEFFDEIAEQVGANKIAVAHNENDQAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ T ++ I RP L R+ I + + +S D +N + Sbjct: 138 MRLLR-----GTGLQGL--TAIHINRGRIIRPLLGVDRKSIEEYCEKYQLSPRIDKTNLE 190 Query: 197 DRFERVRVR 205 ++R ++R Sbjct: 191 SIYKRNKIR 199 >gi|71734564|ref|YP_275961.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555117|gb|AAZ34328.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323103|gb|EFW79192.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320329625|gb|EFW85614.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 445 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 8/157 (5%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V N P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171 + +++T DDQ ET+ R R +G+ + G IL +L RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPGQ--RILGRGHL--VRPLLA 169 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q ++W EDPSN D RF R +R V Sbjct: 170 VSRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206 >gi|316985031|gb|EFV63984.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis H44/76] Length = 436 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VRR 206 R Sbjct: 197 FRH 199 >gi|253572641|ref|ZP_04850042.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6] gi|251837773|gb|EES65863.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6] Length = 426 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL LH+ F H E + + ++V +C + Sbjct: 22 LLVALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDEQFVRQLCQKYG 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + + A +I AH DD +ET+ + Sbjct: 76 IRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L Q + D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQDFVTDSTNLED 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|115352161|ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] gi|115282149|gb|ABI87666.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] Length = 473 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 25/228 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALADLPADARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + RL + + S + P+ G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ ++ RPFLR R + Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225 + QR ++W +D SN D R+ R +R ID L L + F+D Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPTLAMHFPGFRD 224 >gi|290969234|ref|ZP_06560759.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str. 28L] gi|290780740|gb|EFD93343.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +L A SGG DS+ LL L R I+ + ++H +R A DE R V + Sbjct: 21 VLAACSGGPDSLALLDVLARC---RERLHIEVAVAYINHGIRAAAFDEERRVQQAAAARG 77 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + + L AARE RY L+ + + I A I AH +DQ ETV Sbjct: 78 CPCYIRRTAVPALARRRKQSLETAAREERYRLLRDVQRQIRAQSIAVAHHQNDQAETVLW 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + +G GL+G+ + I RPFL R +I + +R++ C D +N + Sbjct: 138 -----HLVRGSGLTGLAG--MRPRREKIIRPFLCVTRAEITDYAARRHLHPCHDETNDEL 190 Query: 198 RFERVRVR 205 R ++R Sbjct: 191 HCTRNKLR 198 >gi|111115622|ref|YP_710240.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo] gi|123046902|sp|Q0SM64|TILS_BORAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|110890896|gb|ABH02064.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo] Length = 440 Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNNII------AFYFAHFIRPDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GL+G+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIP-----SVNKNIIRPLLEVSRPEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI D +N+ + + R +VR Sbjct: 180 LSLNNIRVFIDSTNSQNLYLRNKVR 204 >gi|313664903|ref|YP_004046774.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50] gi|312949767|gb|ADR24363.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50] Length = 401 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 109/222 (49%), Gaps = 15/222 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGG DS+ LL + ++ + V++ R + ++ + V+++C + + Sbjct: 13 LLAISGGPDSVFLLCNIVKIIDSTNLI-----VCHVNYNFRYDSINDQKIVTNLCKKFDL 67 Query: 83 AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ S + + AR RY ++ AK + ++ AH F+D +ET ++ Q Sbjct: 68 KLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYHIYNLLVAHNFNDLIETYLLQLQ 127 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R+ GL T+ + +L + RP L ++ +I +L IS+ D +NTD +++ Sbjct: 128 RNNLVDYYGLK----TVSHYKDLVVYRPLLDIKKSEILDYLKMNQISYAIDSTNTDIKYQ 183 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R ++R + + ++++ +K D+ K + ++ YL Sbjct: 184 RNKIRSILDE----SIFINIKNQIDIDNKKLETIKKIVNNYL 221 >gi|298386289|ref|ZP_06995845.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14] gi|298260666|gb|EFI03534.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14] Length = 426 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG+DS+ LL LH+ F H E + + ++V +C + Sbjct: 22 LLIALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDEQFVRQLCQKYG 75 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + ++ T + AARE RY + + A +I AH DD +ET+ + Sbjct: 76 IRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I +L Q ++ D +N +D Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQNFVTDSTNLED 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|121535066|ref|ZP_01666883.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1] gi|121306316|gb|EAX47241.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1] Length = 468 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 19/212 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L ++++ R L ++VA SGG DS+ L+ LH + F + VDH Sbjct: 1 MILEKVKALVERRRLLTAGDRVVVACSGGPDSLALVHLLHRLQPAYGFDMV---VAHVDH 57 Query: 61 CLR--ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 LR E+A+ E +V C RL ++A V ++ AR RYA + A Sbjct: 58 MLRGAESAR-EAEFVRAFCRRLGLDCQVAAIDVPGVLAERGGSTQEVARTLRYAFLRRVA 116 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173 ++ I T H DDQ ETV + R G+ G+ I+ RP L Sbjct: 117 DSLGGAKIATGHHRDDQAETVLINFLRGAGPGGLRGMQPAAGGII--------RPLLSVT 168 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R++I + ++ C D SN + R RVR Sbjct: 169 RQEIEDYCAAEGLTPCLDSSNLHTDYLRNRVR 200 >gi|257894175|ref|ZP_05673828.1| PP-loop family protein [Enterococcus faecium 1,231,408] gi|257830554|gb|EEV57161.1| PP-loop family protein [Enterococcus faecium 1,231,408] Length = 293 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 7/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 33 ILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEEKN 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ R Sbjct: 90 LPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKIVR 148 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + SG+ + + I RP L +ED+ ++ + + + ED +N +R Sbjct: 149 --GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDIQR 205 Query: 202 VRVRRFV 208 R+R V Sbjct: 206 NRLRHLV 212 >gi|149192143|ref|ZP_01870364.1| cell cycle protein MesJ [Vibrio shilonii AK1] gi|148834013|gb|EDL51029.1| cell cycle protein MesJ [Vibrio shilonii AK1] Length = 437 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------- 68 V I+V SGG DS +L+ L + S + I A+ V H L + A + Sbjct: 16 VMHGKIIVGFSGGVDSR-VLLRLAARYSKQH--SITCLAVHVHHGLSDNANEWQVQCERW 72 Query: 69 -EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V C R+ ++ L AR+ARY + +H ++ +++T Sbjct: 73 AQEEAVEFTCERVTLSQD--------SGESLEQLARQARYQALRQHMQS--GDILLTGQH 122 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + +R KG LS M ++ + + RP L R DI + + Sbjct: 123 LDDQAETMLLALKRGSGPKG--LSSMASSMNFGSGR-LVRPLLNIARHDIERYAQHEQLQ 179 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W ED SN+D RF+R +R+ V Sbjct: 180 WVEDESNSDTRFDRNFLRQSV 200 >gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662] gi|167653318|gb|EDR97447.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662] Length = 437 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 18/193 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG+DS+ LL+ L + + ++ A+ ++H +R A + +V ++C R + Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQEYD---LELCAVHINHGIRREAFKDQEFVENLCRRRK 76 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V K L A R RY + I AH +DQ ET+ Sbjct: 77 VPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHGGGKIAVAHHQNDQAETMLY 136 Query: 138 RSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G G+ G+ + + D + RP L ++E+I ++L +++ W ED SN Sbjct: 137 RMSR-----GTGIQGLKGMEAVRAD----VIRPLLCLKKEEILAYLKEKDQDWMEDASNE 187 Query: 196 DDRFERVRVRRFV 208 D+ F R ++R V Sbjct: 188 DNTFARNKIRNQV 200 >gi|288819201|ref|YP_003433549.1| cell cycle protein [Hydrogenobacter thermophilus TK-6] gi|288788601|dbj|BAI70348.1| cell cycle protein [Hydrogenobacter thermophilus TK-6] gi|308752783|gb|ADO46266.1| tRNA(Ile)-lysidine synthetase [Hydrogenobacter thermophilus TK-6] Length = 316 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 21/204 (10%) Query: 14 RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEV 70 R + P H +LVA SGG DS+ + ++L + F K+K A++ ++H +R + + Sbjct: 15 RKKLIPEHASVLVAFSGGIDSV---ALVLALLELKDFFKLKRVALAHINHGIRAQSDRDE 71 Query: 71 RYVSDVCSRLRIAHSVVSW--KNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAH 126 + + R R+ V + K + G L A ARE RY + + +I TAH Sbjct: 72 DFAVEFARRKRLEIFVERFHVKKMAEEEGENLEALAREVRYKALRSIKQKEGFDIIATAH 131 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +D +ETV + + +G GL G+ D D I RP +E+I+ F++ R Sbjct: 132 HLNDLVETVIL-----WLVRGAGLEGLTGFDEKTED----IVRPLYLVTKEEIKDFVISR 182 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 +W ED +N D + R R+R V Sbjct: 183 GEAWVEDATNYDINYARNRIRHRV 206 >gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 4b H7858] gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459] gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes] gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 4b H7858] gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott A] Length = 648 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANEQNVVEAFCESQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR RY + + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|308389283|gb|ADO31603.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis alpha710] Length = 436 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VRR 206 R Sbjct: 197 FRH 199 >gi|303235677|ref|ZP_07322284.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN] gi|302484124|gb|EFL47112.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN] Length = 461 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 27/192 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 +V +SGG+DS+ LL+ L + + I HC LR E+ +DE Y +C Sbjct: 22 IVGLSGGADSVALLLVLKHLGYN----------IEAAHCNFNLRGEESNRDE-EYCKKLC 70 Query: 78 SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L + ++ + + + AAR RY + I A I AH DD +E Sbjct: 71 EKLNVPFHLIHFDTILYAELHKVSIEMAARTLRYGYFENLRRDIQADAICIAHHRDDSVE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G G+ G+ + N I RP L C R +I FL ++ +++ D + Sbjct: 131 TILLNLIR-----GTGMRGLVG--IRPKNSNIVRPMLDCSRHEIELFLKEKGVNFVTDST 183 Query: 194 NTDDRFERVRVR 205 N D +R ++R Sbjct: 184 NLIDDVKRNKLR 195 >gi|258614287|ref|ZP_05712057.1| hypothetical protein EfaeD_01112 [Enterococcus faecium DO] Length = 343 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 34 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 91 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + I RP L +ED+ ++ + + + ED +N Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 206 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 207 QRNRLRHLV 215 >gi|154490240|ref|ZP_02030501.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC 43184] gi|154089132|gb|EDN88176.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC 43184] Length = 444 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 21/190 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +LV VSGG+DS+ LL ++L + + I A + LR E+ +DE ++V + + Sbjct: 21 VLVGVSGGADSIALL----TILVESGYSCI---AAHCNFHLRGDESLRDE-QFVREYARK 72 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + + + K + AARE RY E A + AH DD +ET+ Sbjct: 73 LDVPFLMTDFDTRKYAADRHLSIEMAARELRYGWFEEQRAATGAQAVAVAHHRDDSVETL 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M R G G+ GM + N ++ RP L REDI +L R +++ D +N Sbjct: 133 LMNLVR-----GTGIRGMSG--IRPRNGFVVRPLLAVSREDILEWLAGRGLTYVTDSTNL 185 Query: 196 DDRFERVRVR 205 D + R +R Sbjct: 186 SDAYTRNFIR 195 >gi|254804970|ref|YP_003083191.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14] gi|254668512|emb|CBA05883.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14] Length = 436 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGSFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|166033184|ref|ZP_02236013.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC 27755] gi|166027541|gb|EDR46298.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC 27755] Length = 516 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 59/266 (22%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 ++V VSGG+DS+ LL L + +R G ++ +A+ V H LR ++A + RYV +C Sbjct: 21 VIVGVSGGADSVCLLFVLTKLRDERQKSGDGTLEITAVHVHHGLRGDSADADERYVRKIC 80 Query: 78 SR----LRIAHSVV-----SWKNSKPQTGLMAAAREA----------------RYALI-S 111 L + H + W S+ + G A REA +Y I S Sbjct: 81 DAWNVPLVVYHKNIRELAKCWNMSEEEAG-RKARREAFLEVRNQYSDVPCDNAQYGDIQS 139 Query: 112 EHAKTINA--------TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILY 159 HA+ N I AH +D+ ETV R +G+G +SG Sbjct: 140 RHAECANGRQESAQGFGKIALAHHRNDEAETVLFHLCRGTDVRGLGGIAPVSG------- 192 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHA 215 WI RP L R +I S+L + IS+C D +N ++ + R ++R V +I+ A Sbjct: 193 ---FWI-RPLLNIGRNEIESYLEKVGISYCTDETNAENVYARNKLRNQVIPQLEEINEQA 248 Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKY 241 ++ + Q +R ++ + V M I +Y Sbjct: 249 VWHISRTAQSVR-ELWSYVDMQIEEY 273 >gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115] gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115] Length = 533 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEH 113 +DH LR + ++ ++V D+ +L AH+ V+ ++ + AAR RY ++S Sbjct: 45 LDHALRPNSAEDAQWVHDLAEQLGAAHTSTRVDVAAVAARRGWNVEDAARRVRYEVLSRA 104 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ A +MTAHT DQ ETV M G+ T + + + RP+L Sbjct: 105 ARQHGAHTVMTAHTRRDQAETVLM---------GLLRGEAVLTGIPAVRGRVRRPWLDVP 155 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R +I ++L W EDP+N D + R +R V Sbjct: 156 RSEIEAYLKALGQEWREDPTNADVTYTRAWLRTEV 190 >gi|322515783|ref|ZP_08068728.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC 49124] gi|322125745|gb|EFX97063.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC 49124] Length = 280 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 22/187 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ + Sbjct: 21 ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEEDYLRHWAKEHK 77 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I +S S K S+ AAR RY + K + + ++TAH DDQ ET++MR Sbjct: 78 IPFHYSAFSGKFSE------NAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDPSNTDDR 198 R + LSG+CD + I RPFL + Q I++ ED SN+ Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKA-------QLPITFHFEDKSNSSLA 181 Query: 199 FERVRVR 205 + R R+R Sbjct: 182 YLRNRIR 188 >gi|261364547|ref|ZP_05977430.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996] gi|288567113|gb|EFC88673.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996] Length = 416 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 9/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG DS ++ LH++ R + A+ V H L A D + + + +C Sbjct: 2 VTVGLSGGLDS---VVLLHTLACLREELGLDVHALHVHHGLSRNADDWLVFCTRLCQEWN 58 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + K G+ AAAR+ARY + S+ ++ I AH DDQ+ET + + R Sbjct: 59 VPFRSAKVEVKKDGLGIEAAARKARYQVFSDDPSSV----IALAHHQDDQIETFMLAAVR 114 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 K + + + +W RP L R+++ ++ N+ ED SN D F R Sbjct: 115 GGGIKALAAMPQWRKLNEEKQIW--RPLLTFSRKELENYAAACNLPNIEDESNADTAFLR 172 Query: 202 VRVR 205 +R Sbjct: 173 NWMR 176 >gi|88798276|ref|ZP_01113862.1| cell cycle protein MesJ [Reinekea sp. MED297] gi|88779052|gb|EAR10241.1| cell cycle protein MesJ [Reinekea sp. MED297] Length = 439 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 15/208 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFL +R + VY V SGG DS+ LL L+ +++G + +AI V+H Sbjct: 11 MFLDLQRELRRNFQPPVY-----VGYSGGVDSILLL-----SLACQAYGADQVTAIHVNH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + E A + +L + V + + G+ + AR+ RY + + T Sbjct: 61 QVSEFATQWQEHCVAQAEQLGCSCIVRTVEVGNRGQGIESDARDRRYDAFA-NVMPEGGT 119 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 L++ H DDQ+ET ++R R + G L GM D I RP L R+DI Sbjct: 120 LLL-GHHLDDQIETFFLRLLRGAGQHG--LQGMVQESNRD-GYRIIRPLLTTSRQDIELM 175 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + W +D SN D RF+R +R V Sbjct: 176 AQHHGLRWIDDESNEDTRFDRNFLRHEV 203 >gi|329723928|gb|EGG60453.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU144] Length = 166 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 16/128 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C Sbjct: 11 KAHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCQ 67 Query: 79 RLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + I +V+ NS Q AR+ RY + + A +++TAH DD Sbjct: 68 QHHIDIYIKRLDLSDIVAAGNSIQQ-----EARQCRYEWFGDIIAQLRADVLLTAHHLDD 122 Query: 131 QLETVYMR 138 QLET+ R Sbjct: 123 QLETIIYR 130 >gi|325278802|ref|YP_004251344.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712] gi|324310611|gb|ADY31164.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712] Length = 441 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 21/207 (10%) Query: 7 ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E+++ F++ + A ++AVSGG+DS+ +L A + +K + + LR Sbjct: 4 ETIKNFLQQHHISRDAGFILAVSGGADSICMLHAF-------KYLNLKMLVLHCNFSLRG 56 Query: 65 TAKD-EVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINA 119 D + ++V C IAHSV + K + GL AARE RY E + Sbjct: 57 KESDMDEQFVKRFCDSYGIAHSVKKFDTLKYARENGLSVEMAARELRYTWFREMKEKKKM 116 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I+ AH DD ETV + R G G+ G+ T + +N I RP L C R DI Sbjct: 117 DYIVVAHHADDVAETVLINLCR-----GTGIKGL--TGIKSINGDILRPLLPCSRTDILK 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRR 206 ++ + + D +N + R ++R Sbjct: 170 YIEDHQLGFRTDSTNNSLDYVRNKIRH 196 >gi|254428462|ref|ZP_05042169.1| PP-loop family [Alcanivorax sp. DG881] gi|196194631|gb|EDX89590.1| PP-loop family [Alcanivorax sp. DG881] Length = 433 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 22/193 (11%) Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 +L+A+SGG DS + L + + + L R SA+ +DH L+ ++ R+ + + Sbjct: 20 LLLALSGGLDSCLLLHLLIKAGLGPR------LSAVHIDHQLQADSQGWARFCQALADQQ 73 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I V N GL A AR+ARY ++ A+ ATL+M AH +DQ ET+ Sbjct: 74 GIPLAIEKVAVDMAN-----GLEAGARDARYRVLLPLARAQGATLVM-AHHRNDQAETLL 127 Query: 137 MRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R + GLS M + + + LW RP L R+ + S+ +++W EDPSN Sbjct: 128 FRLLRGAGVQ--GLSAMREHSEQQGVPLW--RPLLGVGRQTLESWGAALSLNWREDPSNQ 183 Query: 196 DDRFERVRVRRFV 208 D R +R + Sbjct: 184 DQSLRRNYLRHTI 196 >gi|216263345|ref|ZP_03435340.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1] gi|215980189|gb|EEC21010.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1] Length = 440 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNNII------AFYFAHFIRPDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + K+ + G + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + +G+ + I+ RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLVGIPSVNKNII--------RPLLEVSRPEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI D +N+ + + R +VR Sbjct: 180 LSLNNIRVFIDSTNSQNLYLRNKVR 204 >gi|239607883|gb|EEQ84870.1| PP-loop family protein [Ajellomyces dermatitidis ER-3] Length = 688 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + P T AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178 >gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469] gi|255267344|gb|EET60549.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469] Length = 471 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 ++ VSGG+DS+ LL L ++ FS A+ V+H +R + + ++ +V +C Sbjct: 20 VIAGVSGGADSLCLLFVLMEYRK-----RVPFSILAVHVEHGVRGQESLEDAAFVEKICR 74 Query: 79 R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R+ V + + + A R ARY + A I AH DDQ ET Sbjct: 75 EHTIEYRLVQVCVPELARREKLSVEEAGRRARYEAFERIRQETGADKIAVAHNRDDQAET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R G GL+G + + + RP L C R +I +L + +W D +N Sbjct: 135 VLFQIAR-----GSGLTGAGG--IRPVRGAVIRPLLSCSRAEIEEYLRGHSQTWRTDATN 187 Query: 195 TDDRFERVRVR 205 + + R R+R Sbjct: 188 QETDYARNRIR 198 >gi|327355825|gb|EGE84682.1| PP-loop family protein [Ajellomyces dermatitidis ATCC 18188] Length = 688 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + P T AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178 >gi|261198252|ref|XP_002625528.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081] gi|239595491|gb|EEQ78072.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081] Length = 688 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + P T AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178 >gi|182414547|ref|YP_001819613.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1] gi|177841761|gb|ACB76013.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1] Length = 353 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 21/194 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80 +VA SGG+DS+ LL+ L + + + + SA +H LR A +DE R+ + VC+ L Sbjct: 43 MVAFSGGADSLALLLLLWAHWPEH---RRRLSAAHFNHRLRGRAALQDE-RFCARVCAAL 98 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V W++ +P A AR AR+A + A ++ H DD ET+ MR Sbjct: 99 HVPLAVDHWED-RPAKPSEAEARTARHAFFDRQLRKRRARVLWFGHQQDDIAETLLMRLA 157 Query: 141 RDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G GL+G+ ++L RP L ++ ++ + L + SWCED +N Sbjct: 158 R-----GSGLAGLAAPRPVQAMPAGKVHL---RPLLGLKKAELAAALRRCGASWCEDQTN 209 Query: 195 TDDRFERVRVRRFV 208 + + R R+R+ V Sbjct: 210 AGEHYLRSRIRQRV 223 >gi|327484760|gb|AEA79167.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae LMA3894-4] Length = 440 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|256823094|ref|YP_003147057.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069] gi|256796633|gb|ACV27289.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069] Length = 423 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 10/190 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI+VA+SGG DS+ LL ALH SD S+ SA+ +DH L+ + D + C Sbjct: 25 HIVVALSGGVDSLSLLHALHLARTSDSSYS---LSAVYIDHQLQAPSSDWAKQNQRFCES 81 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I V + K L + AR+ARY +SE L+ H +DQ ET ++ Sbjct: 82 LDIPFQSVQVEVDKDLASLESTARKARYQALSEFVPNPQTCLVTGQH-LNDQAETFLLQL 140 Query: 140 QRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R KG+ + + D +++RP L R+ + S+ + EDP+N D Sbjct: 141 FRGAGSKGLASMPKLTDFA----QGYLARPLLTVSRKALESYCNSNGLQAIEDPTNQDTD 196 Query: 199 FERVRVRRFV 208 R VR V Sbjct: 197 IRRNFVRHQV 206 >gi|157414257|ref|YP_001485123.1| ATPase [Prochlorococcus marinus str. MIT 9215] gi|157388832|gb|ABV51537.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9215] Length = 338 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--- 76 ++IL++VSGG DSM LL ++++D KI ISV H + K Y ++ Sbjct: 33 SNILISVSGGQDSMALL----NLIND--LKKIHNWTISVWHGDHQWHKKSSLYALELKSY 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129 C I+ S + +K ARE RY + E AKT+ + ++T HT Sbjct: 87 CEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTLLNKNQQKHNIYLLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIQSKRLLENQIFLIRPILIFSREDTKKFCNHMKIPVW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N+D + +R VR+ + Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221 >gi|225016525|ref|ZP_03705717.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum DSM 5476] gi|224950754|gb|EEG31963.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum DSM 5476] Length = 445 Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 92/209 (44%), Gaps = 24/209 (11%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLR 63 + S++ V SL I+V VSGG+DSM LL AL R GK + A ++HCLR Sbjct: 1 MNSIQIHVSSLFSEGDRIVVGVSGGADSMALLHAL------RHCGKPLHLVAAHLNHCLR 54 Query: 64 --ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 E+ +DE ++V C I + V+ K L RE RYA E Sbjct: 55 GEESERDE-QFVVGYCKEHGIPCEIRQIDVAAAAKKSGQSLELCGRELRYAFFEELCG-- 111 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I TAHT D+ ET+ R G +G+C + I RP R +I Sbjct: 112 EQGFIATAHTLSDRAETLLFNLAR-----GSSPAGLCS--IPAQRGRIVRPLSPFTRGEI 164 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRR 206 ++ + I + D SN D + R R+RR Sbjct: 165 EAYCKEYRIPYQIDSSNLSDDYARNRIRR 193 >gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54] gi|61216493|sp|Q6AJ19|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila LSv54] Length = 471 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 19/190 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V VSGG+DS+ LL L + D ++ AI +DH LR + E+ +V + Sbjct: 31 IIVGVSGGADSIALLHILTELNLD-----LQLIAIYIDHGLRPDEIPQEISFVKGQAGAV 85 Query: 81 -----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I+ V++ KN + AAR RY +E + A IM AH DDQ+E Sbjct: 86 GAEFESISVDVLALKNCD-KLSTEDAARRLRYQAFAEARERYGAKYIMVAHNADDQVEEF 144 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++R R + GLSGM Y N + RP L + D+ +L +R I CED SN Sbjct: 145 FIRLLRGSGRR--GLSGMP----YQ-NGLLLRPLLSLTKADLLLYLQERGIDHCEDSSNR 197 Query: 196 DDRFERVRVR 205 + + R R+R Sbjct: 198 EPCYLRNRIR 207 >gi|309379968|emb|CBX21379.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 411 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL L V + + G I A+ + H L A D + + C L + Sbjct: 1 MALSGGLDSVVLLQLL--VRAGKKGGFIP-EAVHIHHGLSPRADDWADFCQNYCDMLGVR 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 58 LETVKVCVEKNGLGIEAAARQKRYATFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + LS M N I RP L R+DI + + + ED SNTD + R R Sbjct: 114 GLR--ALSAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 171 Query: 204 VR 205 R Sbjct: 172 FR 173 >gi|254481735|ref|ZP_05094978.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] gi|214037864|gb|EEB78528.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] Length = 451 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSR 79 H VA SGG DS LL ++S ++ G+ +A+ ++H L+ A D + + +C Sbjct: 22 HWYVAYSGGVDSTALLQLINSWC--KANGQAPPLTALHINHGLQAQAADWENHCAWICRF 79 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + ++ G+ +AAR+ARYA E + ++ H DDQ+ET ++R Sbjct: 80 LDVPFLALNVDVDPDGRGVESAARQARYARFEEQLE--EGEVLFFGHHQDDQVETFFLRL 137 Query: 140 QRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G+ G+ +L RP L R + +++ + + + EDPSN Sbjct: 138 LRGAGVDGLAAMPRQRGLGKGLLL-------RPLLDYSRAQLEAYVEAQGLRYIEDPSNQ 190 Query: 196 DDRFERVRVRRFV 208 D +R +R+ V Sbjct: 191 DVSLDRNYLRQDV 203 >gi|224534142|ref|ZP_03674722.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S] gi|224514567|gb|EEF84881.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S] Length = 440 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 F+ ++ + + ++VA SGG+DS LL+ L L + A H +R Sbjct: 14 EFYKKNSLNKSRVIVAFSGGTDSTTLLLNLKYYLRNN------IVAFYFAHFIRADNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V + C IA + + K+ + G + AR+ RY + K +A Sbjct: 68 QEIEHVKEFCDFYNIALQIKKCDIDIKSEAIRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GL+G+ +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIP-----SVNGNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NI D +N+ + + R RVR Sbjct: 180 LSLNNIRVFVDSTNSQNLYLRNRVR 204 >gi|312130162|ref|YP_003997502.1| tRNA(ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132] gi|311906708|gb|ADQ17149.1| tRNA(Ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132] Length = 430 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 13/202 (6%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + F++ L P+ LV VSGG DSM LL +S F + L E Sbjct: 4 KIFLKYLPNPSKEKFLVGVSGGKDSMALLDLFYSEGFQVEVAHANFQLRGEEANLDEQLV 63 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V ++ ++ + K SK T + AARE RY + N T + AH Sbjct: 64 HTYCRVKNIPFHVKRFDTKKHAKESKTSTQM--AARELRYQWFYQLLAQRNLTAVALAHH 121 Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 D +ET+++ + KG+ G+ + I+ RP L E I +L + I Sbjct: 122 RRDNIETLFLNITKGTGPKGLQGIPPRGENII--------RPILEATPEQILQYLEENKI 173 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 W ED SN++ ++R ++R V Sbjct: 174 PWREDQSNSETYYQRNKIRHLV 195 >gi|114332355|ref|YP_748577.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91] gi|114309369|gb|ABI60612.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91] Length = 418 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 9/169 (5%) Query: 36 LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-P 94 ++ LH ++ + SAI V+H + + + +C + I S+ K SK P Sbjct: 1 MVLLHLLIKFSKLMPLDVSAIHVEHGISTYSGQWSAFCQTLCDSVAIPLSIHRLKISKQP 60 Query: 95 QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 Q L A AREARY + + I A ++ A DDQ+ET+ ++ R KG LS M Sbjct: 61 QESLEAVAREARYQIF----RQIQADYVLLAQHQDDQVETLLLQLLRGAGVKG--LSAMP 114 Query: 155 DTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 L++ I RP L R +I + +SW D SN D ++R Sbjct: 115 TVRLFESGKAIKLLRPLLNVPRSEIMKYAKLHGLSWVTDESNLDVSYDR 163 >gi|332969142|gb|EGK08174.1| tRNA(Ile)-lysidine synthase [Kingella kingae ATCC 23330] Length = 425 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 57/351 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ VA+SGG DS+ LL S S SA+ + H L A + +D S L Sbjct: 21 HVCVALSGGVDSVVLLHLFAQAQS--SLQLTSLSALHIHHGLNAQADQWQAFCADYASSL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + S + G+ AAAR+ARY + ++ NA I AH +DQ+ET ++ + Sbjct: 79 HIPFTAQSVRIQTNGLGIEAAARQARYQIFAQQ----NADFIALAHHQNDQIETFWLAAL 134 Query: 141 RDYAEKGMGLSGM-------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 R + + LS M C T+L RP L RE I + Q + Sbjct: 135 RGGSLR--ALSAMPKMRDLPRENRAGCLTLL--------RPLLPFTREQIVQYAQQNQLD 184 Query: 188 WCEDPSNTDDRFERVRVR-----RFVRDIDLHALYL--KMKKFQDLRVKVNNAVAMLIPK 240 + D SN + F R VR V+ HA +L + Q+ R ++ +A Sbjct: 185 FVYDNSNDNPNFLRNWVRLHLLPSIVQKQPAHAQHLLHSIATLQEERALLDEIIA---ED 241 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + ++ SQ + S + + A ++ P S+ + L+ + G Sbjct: 242 WQRIQHNAL--FSQRLWQTLSPARQHQMLHQFAQ-RNELGAPSKSSLHQFAQQLRHAQSG 298 Query: 301 CVSI--GRVVI----------DRRANFLWITRAVRNLPTLILY---PEETT 336 ++ GR V+ D A++ W+ R NLP + + PE + Sbjct: 299 EWTLPRGRAVLYRDYLFAIPHDLGASWTWLHRTQTNLPNELRWHNPPEHAS 349 >gi|52841023|ref|YP_094822.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|61216449|sp|Q5ZXE5|TILS_LEGPH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52628134|gb|AAU26875.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 433 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V SGG DS LL L S LS+ + A+ ++H + + + R+ +C Sbjct: 22 LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L IA + + + + AAR ARY S + N L++ H DDQ ETV ++ Sbjct: 76 LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ C + ++RPFL C R ++ + + W ED SN D ++ Sbjct: 133 FRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 189 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R V + L ++K+ + ++ A + + +I D+LN Sbjct: 190 SRNYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 241 Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306 LL ++ + + +I LP ++ R+ ++F K VS + Sbjct: 242 TDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWNQ 301 Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333 + + R L++ +A + NLP I + + Sbjct: 302 IQVRRFQQHLYLLKADQINLPKAIKWQQ 329 >gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA] gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA] Length = 309 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG+DS+ LL+ L + + ++ A+ ++H +R A + +V ++C R + Sbjct: 20 IAVGVSGGADSVCLLLLLCELKQEYD---LELCAVHINHGIRREAFKDQEFVENLCRRRK 76 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V K L A R RY + I AH +DQ ET+ Sbjct: 77 VPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHGGGKIAVAHHQNDQAETMLY 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G L GM + + D + RP L ++E+I ++L ++ W ED SN D+ Sbjct: 137 RMSRGTGIQG--LKGM-EAVRAD----VIRPLLCLKKEEILAYLKEKGQDWMEDASNEDN 189 Query: 198 RFERVRVRRFV 208 F R ++R V Sbjct: 190 TFARNKIRNQV 200 >gi|261392546|emb|CAX50101.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase; tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria meningitidis 8013] Length = 426 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G +A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPNALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|92112713|ref|YP_572641.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter salexigens DSM 3043] gi|91795803|gb|ABE57942.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter salexigens DSM 3043] Length = 430 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG DS LL+ L +V + R + + A+ V+H L++ A D + +C RL Sbjct: 28 VWVALSGGLDS-SLLLTL-AVAACRRHPRPLY-AVHVNHGLQDAAADFEAHARWLCGRLG 84 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + + GL A AR+AR A + TL++ H DDQ ET+ + R Sbjct: 85 VPLFVERARVERGARGLEAHARDARLAAFARRVAP-GETLLLAQHA-DDQAETLLLAGLR 142 Query: 142 DYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G GL GM + + W + RP+L R + R + W +DPSN D+ Sbjct: 143 -----GSGLRGMA--AMPERREWQGRVMVRPWLSVTRAALAREAEARGLRWIDDPSNADE 195 Query: 198 RFERVRVRRFV 208 RF+R +RR V Sbjct: 196 RFDRNYLRRSV 206 >gi|261206683|ref|ZP_05921381.1| PP-loop family protein [Enterococcus faecium TC 6] gi|260079176|gb|EEW66869.1| PP-loop family protein [Enterococcus faecium TC 6] Length = 481 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 31 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 87 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 88 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 146 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 VR--GGQLNTFSGIKEVQPFATGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 203 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 204 QRNRLRHLV 212 >gi|121586235|ref|ZP_01676025.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80] gi|153829935|ref|ZP_01982602.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39] gi|121549501|gb|EAX59527.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80] gi|148874570|gb|EDL72705.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39] Length = 440 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADKW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|293553697|ref|ZP_06674321.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039] gi|291602272|gb|EFF32500.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039] Length = 484 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 34 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 91 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 150 VR--GGQLNTFSGIKEVQPFAAGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 207 QRNRLRHLV 215 >gi|170701543|ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] gi|170133537|gb|EDT01915.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] Length = 468 Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 25/228 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALAYLPADARIAIAYSGGLDSTVLLDA-----TVRMAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + RL + + S + P+ G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVATL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ ++ RPFLR R + Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225 + QR ++W +D SN D R+ R +R ID L L + F+D Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPTLAMHFPGFRD 224 >gi|291043882|ref|ZP_06569598.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] gi|291012345|gb|EFE04334.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] Length = 445 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VRR 206 R Sbjct: 206 FRH 208 >gi|54296810|ref|YP_123179.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris] gi|61216438|sp|Q5X6W4|TILS_LEGPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53750595|emb|CAH12000.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris] Length = 431 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V SGG DS LL L S LS+ + A+ ++H + + + R+ +C Sbjct: 20 LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 73 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L IA + + + + AAR ARY S + N L++ H DDQ ETV ++ Sbjct: 74 LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 130 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ C + ++RPFL C R ++ + + W ED SN D ++ Sbjct: 131 FRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 187 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R V + L ++K+ + ++ A + + +I D+LN Sbjct: 188 SRNYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 239 Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306 LL ++ + + +I LP ++ R+ ++F K VS + Sbjct: 240 TDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWNQ 299 Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333 + + R L++ +A + NLP I + + Sbjct: 300 IQVRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|262192149|ref|ZP_06050310.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93] gi|262031998|gb|EEY50575.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93] Length = 440 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes serotype 4b str. F2365] gi|61216556|sp|Q724J4|TILS_LISMF RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes serotype 4b str. F2365] Length = 648 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHHLRENAANEQNVVETFCESQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR RY + + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|257886017|ref|ZP_05665670.1| PP-loop family protein [Enterococcus faecium 1,231,501] gi|257821873|gb|EEV49003.1| PP-loop family protein [Enterococcus faecium 1,231,501] Length = 484 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 34 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 91 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 150 VR--GGQLNTFSGIKEVQPFAAGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 207 QRNRLRHLV 215 >gi|213585404|ref|ZP_03367230.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 168 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 7/173 (4%) Query: 29 GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88 G DS LL L VL + AI + H L A VR+ VC R ++ V Sbjct: 1 GLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVER 58 Query: 89 WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 59 VTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR--GSGPA 114 Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M + + L + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 115 GLSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 166 >gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1] gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 33/217 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74 + +L+A+SGG DS+ L L+ K+ FS I+ HC LR E+ +DEV +V Sbjct: 19 SKLLIAISGGLDSVVLANLLY---------KLDFS-IAFAHCNFQLRGEESNEDEV-FVK 67 Query: 75 DVCSRLRIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + L+ + ++ N + + + AAR RY E A I+TAH D Sbjct: 68 TLGNSLKAGVFTKKFNTETYANEQ-KLSIQMAARALRYEWFQEIADKFQYDYILTAHHQD 126 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LET + R G G+ G+ T + N I RP L + DI ++ N+ W Sbjct: 127 DMLETFLINLSR-----GTGIDGL--TGIPQQNGNIVRPLLPFTQVDILAYAKNNNLLWR 179 Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQ 224 ED SN ++ R ++R + + +LH + MK FQ Sbjct: 180 EDSSNASTKYVRNKIRHDIVPLLKELHPTF--MKNFQ 214 >gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152] gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 85/195 (43%), Gaps = 24/195 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE----VRYVS 74 +L+A+SGG DS+ L H ++ + I++ HC LR A D V +S Sbjct: 21 LLIAISGGLDSVVLTHLFH---------QLNIAEIALAHCNFKLRNKASDLDEEFVNKLS 71 Query: 75 DVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + S S + K S+ Q + ARE RY E I+TAH DD LE Sbjct: 72 QITSNQIFIKSFQTEKISENQKKSIQITARELRYNWFQELMDEHQLDYILTAHHADDNLE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R G GL G T + +N I R L R +I +F NI W ED S Sbjct: 132 TFLINLTR-----GSGLDGF--TGIPAINGNIVRTLLPFSRSEILNFAKSNNIEWREDAS 184 Query: 194 NTDDRFERVRVRRFV 208 N ++ R ++R V Sbjct: 185 NASIKYVRNKIRHKV 199 >gi|322378539|ref|ZP_08052987.1| PP-loop family protein [Helicobacter suis HS1] gi|322379747|ref|ZP_08054057.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5] gi|321147818|gb|EFX42408.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5] gi|321149053|gb|EFX43505.1| PP-loop family protein [Helicobacter suis HS1] Length = 346 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 22/200 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78 L+ SGG DS+ L L + F +DH LR +++E+ Y + Sbjct: 17 LLGFSGGGDSVALFFLLKK-------EGVNFDIAILDHGLRAQSQEEIAYAKHLAEKYSK 69 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ I +S N L A R+ RY+ + N T ++ AH +D+LE +M+ Sbjct: 70 RVHIGQVHLSGSN------LEARYRKERYSFFERIIQEFNYTHLILAHHLNDKLEWFFMQ 123 Query: 139 SQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + + + +G S + + YDL RP + ++ +R +L + ED +N Sbjct: 124 LAKGSSLQTLLGFSALEKRVGYDL----IRPLIYTQKRTLREYLHTNKYRYFEDETNFSP 179 Query: 198 RFERVRVRRFVRDIDLHALY 217 RF+R R+ V + L ++ Sbjct: 180 RFKRNIFRQCVSNPFLEGVF 199 >gi|54293769|ref|YP_126184.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens] gi|61216435|sp|Q5WYB4|TILS_LEGPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53753601|emb|CAH15059.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens] Length = 431 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 32/326 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V SGG DS LL VL+ + A+ ++H + + + R+ +C L Sbjct: 20 LIVGFSGGLDSTVLL----HVLASTPPLYNQLLAVHINHGISGNSLNWQRHCEQLCLDLG 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IA + + + + AAR ARY S + N L++ H DDQ ETV ++ R Sbjct: 76 IAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQLFR 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ C + ++RPFL C R ++ + + W ED SN D ++ R Sbjct: 133 GAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKYSR 189 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R V + L ++K+ + ++ A + + +I D+LN Sbjct: 190 NYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNATD 241 Query: 262 TLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 LL L+ + + ++ LP ++ +R+ ++F K VS ++ Sbjct: 242 HLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFQRIIHEIIFAKLDAMPTVSWNQIQ 301 Query: 309 IDRRANFLWITRAVR-NLPTLILYPE 333 + R L++ +A + NLP I + + Sbjct: 302 VRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|313203122|ref|YP_004041779.1| tRNA(ile)-lysidine synthetase [Paludibacter propionicigenes WB4] gi|312442438|gb|ADQ78794.1| tRNA(Ile)-lysidine synthetase [Paludibacter propionicigenes WB4] Length = 441 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 35/228 (15%) Query: 14 RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----LRETAK 67 + L+ P A ++V VSGG+DS+ LL LH + + + V HC + E+ + Sbjct: 12 QQLLNPKARVIVGVSGGTDSVVLLHILHV---------LGYECV-VAHCNFHLRMEESDR 61 Query: 68 DE--VRYVSDVCSR--LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 DE VR +S I VS+ + + + AAR+ RY + K ++A I Sbjct: 62 DEEFVRALSKTMKLPFYSIDFDTVSYAD-RHGISIEMAARDLRYEWFHDLLKKLDAEAIA 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DD +ET+ M R G GL G+ + N + RP L C R+++ ++L++ Sbjct: 121 VAHHADDSIETMLMNLVR-----GTGLRGLSG--IRPRNKKVIRPLLCCNRQELENYLIR 173 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV----RDID---LHALYLKMKKFQ 224 ++ ED +N ++R + R V +I+ LY +K+F+ Sbjct: 174 YDLEHVEDSTNASVDYQRNKFRNEVLPLLEEINPSLRQTLYESLKRFE 221 >gi|254525679|ref|ZP_05137731.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202] gi|221537103|gb|EEE39556.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202] Length = 338 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76 ++IL++VSGG DSM LL ++++D K+ ISV DH E + + Sbjct: 33 SNILISVSGGQDSMALL----NLIND--LKKLHNWTISVWHGDHQWHEKSSLYALELKSY 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129 C I+ S + +K ARE RY + E AKT+ + ++T HT Sbjct: 87 CEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTVLNKNQQKHNIYLLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLLENQIFLIRPILIFSREDTKKFCNHMKIPVW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N+D + +R VR+ + Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221 >gi|37680722|ref|NP_935331.1| cell cycle protein MesJ [Vibrio vulnificus YJ016] gi|61217308|sp|Q7MIH8|TILS_VIBVY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|37199471|dbj|BAC95302.1| cell cycle protein MesJ [Vibrio vulnificus YJ016] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 15/204 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL H + + A+ V H L A V+ + C Sbjct: 22 LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139 I +V + Q + AR ARY + H INA L++T DDQ+ET + Sbjct: 79 IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M + + I RP L RR++I ++W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLNWVEDESNQDTRY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223 + R F+R L AL + F Sbjct: 193 D----RNFLRQQILPALSERWPSF 212 >gi|289565044|ref|ZP_06445498.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF] gi|294614895|ref|ZP_06694786.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636] gi|289163251|gb|EFD11097.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF] gi|291592181|gb|EFF23799.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636] Length = 484 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + IL AVSGG DSM LL L V R G + ++H LRE + +E Y+ C Sbjct: 34 SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V W++ ++ + AR RY + + +MTAH DDQ+ETV M+ Sbjct: 91 KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206 Query: 200 ERVRVRRFV 208 +R R+R V Sbjct: 207 QRNRLRHLV 215 >gi|268601288|ref|ZP_06135455.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] gi|268585419|gb|EEZ50095.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] Length = 436 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VRR 206 R Sbjct: 197 FRH 199 >gi|329925517|ref|ZP_08280391.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5] gi|328939800|gb|EGG36140.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5] Length = 476 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 9/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DS+ LL LH + R+ ++ V H R + E V ++ LR Sbjct: 29 IVVAVSGGPDSVALLHVLHEISMHRT--PLRLICAHVHHGFRRESDQEAEMVRELAESLR 86 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A + + G AARE RY + + A+ NA + AH DDQ ETV+M Sbjct: 87 LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKHNARSVALAHHADDQAETVFM 146 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+G T + + + RPFLR + DI + D SN Sbjct: 147 RLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDHSNLQT 203 Query: 198 RFERVRVR 205 ++ R +R Sbjct: 204 KYRRNAIR 211 >gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] gi|229323338|gb|EEN89102.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] Length = 325 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 17/199 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++VR + + +VA+SGG+DS+ L A +V S A+ VDH L++ + Sbjct: 14 QAVRAWTVAFEPRRRAVVALSGGADSLALTAA--AVAETDSV-----DALIVDHRLQDGS 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 R +D L + V + L AAAREARY+ + + + ++ H Sbjct: 67 DAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP---VLLGH 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R G + GM +D W RP L RR R+ + I Sbjct: 124 TLDDQAETVLLGLSR--GSGGRSIQGMA---AFDAP-W-GRPLLGIRRSVTRAACVDLGI 176 Query: 187 SWCEDPSNTDDRFERVRVR 205 + EDP N + F RVR+R Sbjct: 177 TPWEDPHNNNPEFTRVRLR 195 >gi|86157919|ref|YP_464704.1| tRNA(Ile)-lysidine synthetase-like [Anaeromyxobacter dehalogenans 2CP-C] gi|85774430|gb|ABC81267.1| tRNA(Ile)-lysidine synthetase-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 451 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 12/193 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L PA +LVA+SGG+DS LL AL ++ + +++ A+ +DH LR ++ E Sbjct: 20 RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRTGSEPEAAS 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C+RL + + + + + A AR RYA + E A +T I T HT DQ Sbjct: 78 ARGACARLGV--PLEERRLAVKAGNVQAEARRVRYAALREAAARAGSTRIATGHTLGDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R R +G+ + + RP + RE+ ++L + W +DP Sbjct: 136 ETVLLRLLRGAGARGL-------AAIPPRRGEVIRPLIDRTREEGNAYLRALGLGWGDDP 188 Query: 193 SNTDDRFERVRVR 205 +N R+ R R+R Sbjct: 189 TNAAPRYARNRLR 201 >gi|297580884|ref|ZP_06942809.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385] gi|297534710|gb|EFH73546.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385] Length = 440 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|261400234|ref|ZP_05986359.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970] gi|269210035|gb|EEZ76490.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970] Length = 411 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 1 MALSGGLDSV---VLLHLLVRAGKKGGFIPEAVHIHHGLSPRADDWADFCQNYCDMLGVR 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 58 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 171 Query: 204 VR 205 R Sbjct: 172 FR 173 >gi|261245468|emb|CBG23258.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301156863|emb|CBW16339.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 403 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 5/151 (3%) Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110 + AI + H L A VR+ VC R ++ V + G+ A AREARY Sbjct: 16 VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF 75 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 ++ + ++ TA DDQ ET + +R G LS M + + L + RP L Sbjct: 76 AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 R R+ + + ++ + W ED SN DD ++R Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161 >gi|229524245|ref|ZP_04413650.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426] gi|229337826|gb|EEO02843.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426] Length = 440 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|312864100|ref|ZP_07724335.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396] gi|311100332|gb|EFQ58540.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396] Length = 280 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 22/187 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ + Sbjct: 21 ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEEDYLRHWAKEHK 77 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I +S S K S+ AAR RY + K + + ++TAH DDQ ET++MR Sbjct: 78 IPFHYSAFSGKFSEN------AARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDPSNTDDR 198 R + LSG+CD + I RPFL + Q I++ ED SN+ Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKA-------QLPITFHFEDKSNSSLA 181 Query: 199 FERVRVR 205 + R R+R Sbjct: 182 YLRNRIR 188 >gi|307720468|ref|YP_003891608.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294] gi|306978561|gb|ADN08596.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294] Length = 330 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 26/191 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS LL L I F VD+ RE +K+EV Y + + Sbjct: 16 LLAFSAGGDSTALLFMLLE-------NNIPFDIAIVDYGTREQSKEEVAYAKALAKQYNF 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +V K + ++ A AR+ RY LI EH + ++TAH D+ E + M+ Sbjct: 69 TCNVHQAK--EIESNFEANARKIRYDFFETLIQEH----DYDTLLTAHHLGDRFEWMLMQ 122 Query: 139 SQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 KG G L+GM + L + + RP L ++++ +L NI + ED SN+ Sbjct: 123 FC-----KGAGCAELAGMQEKALRN-GYILYRPLLHVDKQELLEYLHGNNIKYFEDKSNS 176 Query: 196 DDRFERVRVRR 206 D+++ R R Sbjct: 177 DEKYTRNTFRH 187 >gi|218710301|ref|YP_002417922.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32] gi|254764823|sp|B7VIQ1|TILS_VIBSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|218323320|emb|CAV19497.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32] Length = 456 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 11/197 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +S + P+ ++VA SGG DS +L+ L + + ++ G I+ A+ V H L + A Sbjct: 14 QSALKPSRLIVAFSGGVDSR-VLLELAAQYA-QTHG-IECCAVHVHHGLSKNADLWAEQC 70 Query: 74 SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C L ++ +V VS + ++ + AR+ARY +H + +++T DDQ Sbjct: 71 QTWCDALSVSLAVERVSLDINCGES-VEKLARDARYQAFQQHIR--QGDVLVTGQHIDDQ 127 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + +R KG LS M + + +I RP L R DI + ++W ED Sbjct: 128 LETFLLALKRGSGPKG--LSSMAKVMSFG-EAFIVRPLLSVTRLDIEASAHDMGLTWVED 184 Query: 192 PSNTDDRFERVRVRRFV 208 SN D RF+R +R V Sbjct: 185 ESNQDLRFDRNFIRHQV 201 >gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017] gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017] Length = 648 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHHLRENAANEQNVVEAFCESQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR RY + + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2] Length = 442 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L V RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLL--VQLARSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ ++ + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRSLGGGR---LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|325202116|gb|ADY97570.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240149] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|23097532|ref|NP_690998.1| cell-cycle protein [Oceanobacillus iheyensis HTE831] gi|61216653|sp|Q8EU18|TILS_OCEIH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22775755|dbj|BAC12033.1| cell-cycle protein [Oceanobacillus iheyensis HTE831] Length = 466 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC- 77 A I+V VSGGSDSM LL H + + + +I+ A++++H LR E + + ++V C Sbjct: 19 AKIIVGVSGGSDSMALL---HFLKNLQEQWEIEVIALTINHQLRGEDSTADQKFVEQWCF 75 Query: 78 -SRLR-IAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 S +R IAH V V + + AAR RY + + A + H DDQ+ET Sbjct: 76 HSDIRCIAHQVDVGEYQRQYRVSEELAARRLRYEIYEAEMRKQGADYLALGHHGDDQVET 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCED 191 ++MR R + S + I + + RPFL ++ I +++ + + + ED Sbjct: 136 LFMRLTR------VATSNAFEGIPVKRSFASGQLIRPFLCVNKQLILNYVKENEVPFRED 189 Query: 192 PSNTDDRFER 201 +N D+++ R Sbjct: 190 QTNKDNKYTR 199 >gi|325917349|ref|ZP_08179566.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325536436|gb|EGD08215.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 434 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 9/184 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+A SGG DS LL AL ++ + R G A+ V H L A + C+ Sbjct: 14 PGPVLIAYSGGMDSGVLLHALAALPAYRDRG---LRALHVHHGLHADADAWAAHCQRTCA 70 Query: 79 RLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ +V + ++ + GL AAAR+AR+ +E A + AH DDQ ET + Sbjct: 71 GLQVPLQIVRVQVARDRGLGLEAAARQARHTAFAE--ILAPAEWLALAHHRDDQAETFLL 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R G+ + + LW RP L R D++++ + W +DPSNTD Sbjct: 129 RALRASGPDGLAAMRIQRPFAQGI-LW--RPLLAHARADLQAYARLHALHWIDDPSNTDA 185 Query: 198 RFER 201 R++R Sbjct: 186 RYDR 189 >gi|254302226|ref|ZP_04969584.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322418|gb|EDK87668.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 448 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QHFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE + + AT I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEIGKTLEEVGREERYKFFSEIYEKVRATKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ + + N + RP ++DI +L + I + D +N + Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--VIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|91214572|ref|ZP_01251545.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755] gi|91186999|gb|EAS73369.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755] Length = 437 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 22/244 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGG DS+ L +S+ D F +D + +DE +V ++ L+ Sbjct: 22 LIAISGGLDSVVLAHLCNSLHLDFGLSHCNFQLRGLD-----STRDE-EFVENLSISLKC 75 Query: 83 AHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +++ + ++ + AR+ RY E +T + ++TAH +D LET + Sbjct: 76 EFFIKTFQTESIAKESKSSIQLTARKLRYDWFQELIETTSHNYLLTAHHLNDDLETFIIN 135 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL G+ T + N I RP L+ + +++ + ++ NI W ED SN + Sbjct: 136 LSR-----STGLKGL--TGIPQRNSHILRPLLKFSKAELKEYAIKHNIYWREDQSNASTK 188 Query: 199 FERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + R +R + ++L++ +L + F+ K+ LI Y +S+++ + Sbjct: 189 YLRNEIRHKIVPSLLELNSQFL--ESFESTLEKL-KQTEHLIKDYTASLHQSLVSEEANR 245 Query: 257 LNID 260 NID Sbjct: 246 FNID 249 >gi|91792927|ref|YP_562578.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella denitrificans OS217] gi|91714929|gb|ABE54855.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella denitrificans OS217] Length = 476 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 10/188 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78 A +++A SGG DS L L L + +I + V H L A + + Sbjct: 27 AKLVLAYSGGVDSEVLAAGL--SLFSQFHPEIDCRLLHVHHGLSAHADSWTEHCRKRAAF 84 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + VS + K ++ L A AR ARY I++H + +++TAH DDQLET+ + Sbjct: 85 YGLPLIVEKVSVQKGKRES-LEAKARAARYHAIAQHLHQND--ILLTAHHEDDQLETLLL 141 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +R KG+ G C + W+ RP L R+ I + + ED SN DD Sbjct: 142 ALKRGQGPKGLAAMGECQR---KDHYWLLRPLLSVSRQQIEALAASEALVHIEDDSNQDD 198 Query: 198 RFERVRVR 205 F+R +R Sbjct: 199 SFDRNFLR 206 >gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] gi|259533748|sp|C0ZNS6|TILS_RHOE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226183224|dbj|BAH31328.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] Length = 325 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 17/199 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++VR + + ++VA+SGG+DS+ L A +V S A+ VDH L+ + Sbjct: 14 QAVRAWTVAFEPRRRVVVALSGGADSLALTAA--AVAETDSV-----DALIVDHRLQPGS 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 R +D L + V + L AAAREARY+ + + + ++ H Sbjct: 67 DAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP---VLLGH 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R G + GM +D W RP L RR R+ + I Sbjct: 124 TLDDQAETVLLGLSR--GSGGRSIQGMA---AFDAP-W-GRPLLGIRRSVTRAACVDLGI 176 Query: 187 SWCEDPSNTDDRFERVRVR 205 + EDP N + F RVR+R Sbjct: 177 TPWEDPHNNNPEFTRVRLR 195 >gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2] gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2] Length = 482 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 14/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+VAVSGG DS+ LL LH + ++ V H R E + E V ++ +L Sbjct: 29 IVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAEEVHNIARKL 86 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ ++ + G AARE RY+ + + A A I AH DDQ ETV Sbjct: 87 KLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMAHHGDDQAETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G G +G+ L + N+ + RP LR + D+ + S+ D +N Sbjct: 147 LHLLR-----GSGPAGLAGMRLARNEKNVQLIRPLLRMYKADLIEYCNFHGFSYVTDSTN 201 Query: 195 TDDRFERVRVR 205 ++ R +R Sbjct: 202 LSSKYRRNAIR 212 >gi|325198322|gb|ADY93778.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis G2136] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E I + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|325130238|gb|EGC53008.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis OX99.30304] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|325128268|gb|EGC51153.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis N1568] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|154483317|ref|ZP_02025765.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC 27560] gi|149735827|gb|EDM51713.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC 27560] Length = 502 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 69/246 (28%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L Y +++ VSGG+DS+ +L L + S+ + + + ++H +R + A+ + YV Sbjct: 15 LQYGDSVILGVSGGADSICMLYLLKDISSEMN---LTLYVVHINHHIRGKQAQHDADYVK 71 Query: 75 DVCSRLRIAHSVVSWKNSKP----QTGLMA--AAREARYALISEHA-------------- 114 DVC +L + + P QTG+ A R+ARY E A Sbjct: 72 DVCRKLNVDFKQIDA--DVPLMVKQTGMTEEEAGRQARYKAFFERAIEVKIKEKKQAKNQ 129 Query: 115 ----------------------------------KTINATLIMTAHTFDDQLETVYMRSQ 140 + N I AH +D ETV Sbjct: 130 TKKPDESRKLSLKENKENSAKEDGIKKNDPKERKNSYNNIKIAVAHNLNDNSETVLFNLF 189 Query: 141 RDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G G+ G+ + D+ I RP L C R++I +L +NIS+C D +N + + Sbjct: 190 R-----GTGIKGLTGIPVRRDM---IVRPLLCCTRQEIEHYLKSKNISYCSDATNKETEY 241 Query: 200 ERVRVR 205 R ++R Sbjct: 242 SRNKIR 247 >gi|319410441|emb|CBY90801.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase; tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria meningitidis WUE 2594] Length = 436 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|255994856|ref|ZP_05427991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium saphenum ATCC 49989] gi|255993569|gb|EEU03658.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium saphenum ATCC 49989] Length = 351 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 24/203 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++V +SGG DS+ LL L+ + D A+ +DH LR D + + C Sbjct: 24 VVVGLSGGPDSVALLHCLNELGYD-------CIAVHIDHSLRGCESDGDAEFARTFCHDR 76 Query: 81 RIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQL 132 I + + + +K + G+ AAR RY + + A A I A +DQ+ Sbjct: 77 DIPFKMFKFDCKRYAKEEALGVEEAARNKRYEVFAAVADGFIAQGKNVCIAVAQNQNDQV 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET+ MR R G G+ G+C + I RP L REDI +FL + NI + Sbjct: 137 ETLIMRLIR-----GTGIEGLCGIDVKRKSRTGASIVRPILNKSREDIMAFLEEENIPYR 191 Query: 190 EDPSNTDDRFERVRVRRFVRDID 212 D SN++ + R RVR + ID Sbjct: 192 LDSSNSEPDYFRNRVRLALARID 214 >gi|89075403|ref|ZP_01161820.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34] gi|89048819|gb|EAR54389.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%) Query: 98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 L AAREARY ++++H +++TA DDQ+ET + +R GL+ M + Sbjct: 100 LEQAAREARYNILAQHVN--KGDMLLTAQHSDDQIETFLLALKR--GSGPAGLAAMPTIL 155 Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + + RP L +R DI + L +SW ED SN D+R++R +R + Sbjct: 156 PFAKGMHL-RPLLNIKRSDIEQYGLDHKLSWVEDESNQDERYDRNFIRHQI 205 >gi|325142381|gb|EGC64790.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis 961-5945] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E I + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|213156069|ref|YP_002318114.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057] gi|215484603|ref|YP_002326838.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294] gi|213055229|gb|ACJ40131.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057] gi|213986972|gb|ACJ57271.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294] Length = 424 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 14 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 71 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 72 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 124 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q + + +DP N D+ ++RV R Sbjct: 125 LDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCRE 161 >gi|325208130|gb|ADZ03582.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis NZ-05/33] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|256370688|ref|YP_003108513.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri SMDSEM] gi|256009480|gb|ACU52840.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri SMDSEM] Length = 438 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 26/210 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 I VAVS G DSM +L L + I V HC LR ++ KDE ++ + Sbjct: 22 IYVAVSSGLDSMVMLDLLLKSCN---------HPIGVIHCNFNLRGDDSDKDEF-FIQEF 71 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + ++K K + + AR+ RY I H DD + Sbjct: 72 CLKNNLNFKSKNFKTPTIRRKTKFSIQMIARKLRYDWFKFLLNNSYCDYIALGHHLDDSI 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET ++ R G G+ G+ + N I RP +++IRS+ + NI W ED Sbjct: 132 ETFFINIIR-----GTGIKGLIGINNFKKN--IIRPLFLFSKKEIRSYAKENNIHWREDI 184 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 SN D ++ R ++R F++ I + Y KK Sbjct: 185 SNNDLKYLRNKIRFFLKPILNYKFYNGFKK 214 >gi|254671868|emb|CBA04090.1| cell cycle protein [Neisseria meningitidis alpha275] Length = 436 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|325136324|gb|EGC58932.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M0579] Length = 436 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|318061598|ref|ZP_07980319.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actG] Length = 304 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ ++VDH L+E + V+ + LR Sbjct: 5 VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 61 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A +V + P+ A A A+ +H A I+ HT DDQ ETV + Sbjct: 62 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEKH----GAAAILLGHTRDDQAETVLL 117 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM + + RPFLR R+ R + +++ +DP NTD Sbjct: 118 GLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDP 173 Query: 198 RFERVRVR 205 + R R+R Sbjct: 174 AYTRSRLR 181 >gi|325138171|gb|EGC60742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ES14902] Length = 426 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E I + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186 Query: 204 VR 205 R Sbjct: 187 FR 188 >gi|307243197|ref|ZP_07525370.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM 17678] gi|306493458|gb|EFM65438.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM 17678] Length = 459 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V +SGG DS+ LL L+ + ++ IK A+ ++H +R A + YV +C L Sbjct: 22 IVVGLSGGPDSVCLLHTLYRLSKEKD---IKIYAVHLNHMIRGLDAFLDSLYVMKLCQSL 78 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V + + GL AR+ RY + SE + A I H +DQ ET+ Sbjct: 79 YIPCFIRTIDVPKYCQENKLGLEDGARKLRYQVFSEVRDRLGAKKIAIGHNKNDQAETIL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ I Y + RP L RE I ++ ++ + D SN + Sbjct: 139 MRIMR-----GTGLQGLR-GIEYKRKDGVIRPILDIDRESIEAYCMEHKLLPRIDSSNLE 192 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 193 PIYSRNKIR 201 >gi|307128621|ref|YP_003880651.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri CARI] gi|306483083|gb|ADM89953.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri CARI] Length = 432 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 I V+VS G DSM LL L + + I V HC LR ++ KDE+ ++ + Sbjct: 22 IYVSVSSGLDSMVLLDVLMKICN---------IPICVIHCNFNLRGNDSEKDEL-FIQEF 71 Query: 77 CSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I + NS + AR+ RY I H DD +ET Sbjct: 72 CLKNKIFFKSKKFNTINSNSNFSIQMMARKFRYDWFKYLLNNSYCDYIALGHNLDDSIET 131 Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R KG+ G++ + I+ RP +++I S+ + I W ED S Sbjct: 132 FFINLIRGTGIKGLIGINNFKNQII--------RPLSFFLKKEIISYANENKIKWREDIS 183 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK 222 N D ++ R R+R F++ I + Y KK Sbjct: 184 NYDHKYLRNRIRFFLKPILDYKFYNGFKK 212 >gi|301344692|ref|ZP_07225433.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB056] gi|301510194|ref|ZP_07235431.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB058] gi|301595522|ref|ZP_07240530.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB059] gi|332856879|ref|ZP_08436288.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150] gi|332867219|ref|ZP_08437484.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113] gi|332726933|gb|EGJ58438.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150] gi|332734158|gb|EGJ65290.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113] Length = 427 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 17 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 75 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q + + +DP N D+ ++RV R Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCRE 164 >gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] gi|258603457|gb|EEW16720.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] Length = 351 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 20/194 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + V +SGG+DS+ L+ H +L +K A+ VDH L+E + R ++ Sbjct: 41 AGVAVGLSGGADSLALV---HGLLRC----GVKVHAVVVDHQLQEASAQVARQAAETAMS 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + G AR+ARY + A ++ AHT DD E + + Sbjct: 94 LGASAEIRTVEVEGLGEG---PARQARYQALGTAAA---GRPLLVAHTADDDAEGLLIGL 147 Query: 140 QRDYAEKGMGLSGM----CDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + ++GM D D W+ RP L C R + + ++W EDP N Sbjct: 148 VRGSGAEA--IAGMRSVHTDHAAVDAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHN 205 Query: 195 TDDRFERVRVRRFV 208 + D + R R+R V Sbjct: 206 SSDAYLRSRIRTRV 219 >gi|269101956|ref|ZP_06154653.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161854|gb|EEZ40350.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 467 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 19/199 (9%) Query: 16 LVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L YP H +++A SGG DS LL + +++ + A+ V H L A + Sbjct: 43 LAYPHHSKRLIIAFSGGVDSRVLLELVARFIAEHP--DYQAHAVYVHHGLSAHADE---- 96 Query: 73 VSDVCSRLRIAHSV-VSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHT 127 C R ++ + + + + +TG + AR+ARY +S H +++TA Sbjct: 97 WGIKCQRWAESYGISFTLERVQLETGARVSIEQVARQARYHALSTHMNL--GDILLTAQH 154 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET + +R G+ + + +RP L RR +I F L + Sbjct: 155 ADDQIETFMLALKRGSGPTGLAAMPQWQRFVLGFH---ARPLLTTRRAEIVQFALDHQLD 211 Query: 188 WCEDPSNTDDRFERVRVRR 206 W ED SN D R++R +R Sbjct: 212 WVEDESNQDTRYDRNFLRH 230 >gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 486 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 32/222 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE+ L A ++VAVSGG DS+ LL L ++ + + + +DH LR E Sbjct: 7 IETTLIRDGRLASAACLVVAVSGGPDSLALLHRLTALATPYGW---RLHVAHLDHGLRGE 63 Query: 65 TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + E +V+++ + + ++ V + GL AAAR RY ++E A A Sbjct: 64 QSAAEAAFVAEIAADWGLTATIELRDVDQVAKQYHVGLPAAARATRYRFLAEVALQQQAD 123 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-------------- 166 ++ H DDQ ETV + + +G G SG+ + + W+ Sbjct: 124 AVVLGHQSDDQAETVLL-----HVLRGTGPSGL--SAMRPRTEWVGWRVTAGMPHQAVGP 176 Query: 167 ---RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RP L R++I ++ ++ + DP+N + R R+R Sbjct: 177 ALIRPMLNITRDEIEAYCDEQQLEPRRDPTNNSLEYTRGRIR 218 >gi|325204175|gb|ADY99628.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240355] Length = 426 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186 Query: 204 VRR 206 R Sbjct: 187 FRH 189 >gi|296106371|ref|YP_003618071.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy] gi|295648272|gb|ADG24119.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy] Length = 433 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V SGG DS LL L S LS+ + A+ ++H + + + R+ +C Sbjct: 22 LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L IA + + + + AAR ARY S + N L++ H DDQ ETV ++ Sbjct: 76 LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ C + ++RPFL C R ++ + + W ED SN D ++ Sbjct: 133 FRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 189 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R V + L ++K+ + ++ A + + +I D+LN Sbjct: 190 SRNYLRHRV-------MPLLLEKWPGVVGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 241 Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306 LL L+ + + ++ LP ++ R+ ++F K VS + Sbjct: 242 TDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAMPTVSWDQ 301 Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333 + + R L++ +A + NLP I + + Sbjct: 302 IQVRRFQQHLYLLKADQINLPKAIKWQQ 329 >gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119870890|ref|YP_940842.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] gi|108772158|gb|ABG10880.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119696979|gb|ABL94052.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] Length = 320 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 87/203 (42%), Gaps = 20/203 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E RF R L VA+SGG+DS+ AL +V +D + +A+ VDH L+ + Sbjct: 13 EVARFARRHLAGTQRWCVALSGGADSL----ALTAVAAD----ILPTTALIVDHGLQPDS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTA 125 RL A + V + G AAAR ARY AL + H ++ Sbjct: 65 AAVAETARAEALRLGCADAHVLRVDVGTSGGPEAAARTARYGALRAAH----GGAPVLLG 120 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + + +CD Y RP L RR + + Sbjct: 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELG 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + DP N+D R+ R R+R V Sbjct: 174 LHPWVDPHNSDPRYTRSRLRTEV 196 >gi|148360562|ref|YP_001251769.1| cell cycle protein MesJ [Legionella pneumophila str. Corby] gi|148282335|gb|ABQ56423.1| cell cycle protein MesJ [Legionella pneumophila str. Corby] Length = 431 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V SGG DS LL L S LS+ + A+ ++H + + + R+ +C Sbjct: 20 LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 73 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L IA + + + + AAR ARY S + N L++ H DDQ ETV ++ Sbjct: 74 LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 130 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ C + ++RPFL C R ++ + + W ED SN D ++ Sbjct: 131 FRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 187 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R V + L ++K+ + ++ A + + +I D+LN Sbjct: 188 SRNYLRHRV-------MPLLLEKWPGVVGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 239 Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306 LL L+ + + ++ LP ++ R+ ++F K VS + Sbjct: 240 TDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAMPTVSWDQ 299 Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333 + + R L++ +A + NLP I + + Sbjct: 300 IQVRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|254493722|ref|ZP_05106893.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291] gi|268598934|ref|ZP_06133101.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11] gi|268603613|ref|ZP_06137780.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|268682089|ref|ZP_06148951.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332] gi|268684299|ref|ZP_06151161.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|268686557|ref|ZP_06153419.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|293399092|ref|ZP_06643257.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62] gi|226512762|gb|EEH62107.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291] gi|268583065|gb|EEZ47741.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11] gi|268587744|gb|EEZ52420.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|268622373|gb|EEZ54773.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332] gi|268624583|gb|EEZ56983.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|268626841|gb|EEZ59241.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291610506|gb|EFF39616.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62] Length = 436 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VRR 206 R Sbjct: 197 FRH 199 >gi|226950983|ref|YP_002806074.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto] gi|226842830|gb|ACO85496.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto] Length = 468 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R R+R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNM 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|294101776|ref|YP_003553634.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM 12261] gi|293616756|gb|ADE56910.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM 12261] Length = 470 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 19/188 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSDVCS 78 +VAVSGGSDS+ LL F K ++H +RE + E V+ +++ Sbjct: 41 VVAVSGGSDSVALLWFF------VQFWPGKVIVAHLEHGIRERSSIEDAAFVKKLAEAWG 94 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I H VV + + L AR RY + A + AT++ HT DD ET+ Sbjct: 95 CEFEIEHVVVP-RLLRKGESLEEGARRVRYDFFEQIAASEGATVVALGHTADDIAETLLF 153 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GL G+ + + RP RED+R L R I W EDP+N D Sbjct: 154 NLCRGSGP--FGLVGIPEVRGQFI-----RPLSGWWREDLRRLLQARGICWREDPTNLDT 206 Query: 198 RFERVRVR 205 + R R+R Sbjct: 207 TYVRNRIR 214 >gi|268594781|ref|ZP_06128948.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae 35/02] gi|268596895|ref|ZP_06131062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae FA19] gi|268548170|gb|EEZ43588.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae 35/02] gi|268550683|gb|EEZ45702.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae FA19] Length = 435 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 25 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 82 LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 137 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 138 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 195 Query: 204 VRR 206 R Sbjct: 196 FRH 198 >gi|284034335|ref|YP_003384266.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836] gi|283813628|gb|ADB35467.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836] Length = 349 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 10/202 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+VR +R L +LVA SGG+DS+ L A+ +++ A+ VDH L+ + Sbjct: 32 EAVRAALRELPADTTVLVACSGGADSLALAAAIAFEAPKL---RLRAGAVIVDHGLQADS 88 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +D C L + V + G AAR ARY + A A +++ AH Sbjct: 89 AHAAAIAADQCRSLGLDPVEVRAVEVGSEGGPEGAARAARYDALRAAADQFGADVVLLAH 148 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + L+GM + + RP L R + + + Sbjct: 149 TRDDQAETVLLGLARGSGAR--SLAGMA-----PVAGLLRRPLLEVPRASTAAACIASGL 201 Query: 187 SWCEDPSNTDDRFERVRVRRFV 208 DP N D ++ RVRVR V Sbjct: 202 RPWHDPHNDDPQYRRVRVRHEV 223 >gi|145300032|ref|YP_001142873.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852804|gb|ABO91125.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 14/200 (7%) Query: 12 FVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F ++L P +LVA SGG DS +L+AL + + R G + A+ V H L A + Sbjct: 9 FCQTLPEPEGSRGLLVAFSGGLDST-VLLALAAQFA-REHG-LALRALHVHHGLSPHADE 65 Query: 69 EVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V + VC +L + V V ++ L A AR+ARY ++ A+ ++TAH Sbjct: 66 WVAHCEAVCQQLAVPLMVERVQLLRGNGES-LEAQARDARYQRLA--ARQEKGEWLLTAH 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQLET+ + +R + GL+G+ + + L + RP L R ++ Sbjct: 123 HQDDQLETLLLALKRGAGLR--GLAGILPSQPFAGGL-LLRPLLEFSRAELAEVAATLPF 179 Query: 187 SWCEDPSNTDDRFERVRVRR 206 W ED SN D ++R +R+ Sbjct: 180 GWVEDESNQDVSYDRNFLRQ 199 >gi|304387557|ref|ZP_07369746.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091] gi|304338444|gb|EFM04565.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091] Length = 445 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 9/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 148 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 205 Query: 204 VRRFV 208 R + Sbjct: 206 FRHCI 210 >gi|302338330|ref|YP_003803536.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293] gi|301635515|gb|ADK80942.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293] Length = 449 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 41/295 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 +LVA SGG DS LL A ++LS + A+ +DHCLR + + E R + + Sbjct: 22 GRLLVAYSGGPDSTALLAASVALLSVSA--DFTLEAVYIDHCLRSQDERREERTIIQAAT 79 Query: 79 R--------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 R L + + + S +G+ AAAR+ RY+ + AHT DD Sbjct: 80 RRWNVPLHLLSVGEGEIVSQASASGSGVEAAARQYRYSCFENLISREKFDYCLLAHTLDD 139 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-------RPFLRCRREDIRSFLLQ 183 Q+ET+ R + + D +L I RPFL ++ D+ +L + Sbjct: 140 QVETILQR--------------LFEGAALDSSLGIPERRGPFFRPFLSVKKSDLLDYLRE 185 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 RN S+ D +N ++ + R R+R + + A ++ F + ++A+ L+P+ Sbjct: 186 RNFSFSTDSTNGENFYLRNRIRNEIIPVVASVFPAYRTAIESFLAKQRMADSALRALLPE 245 Query: 241 YLTVHMRSIIAISQDILNI----DSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + S ++S D + +L R+ A I Q LP Y +ER++ Sbjct: 246 -IPFRKESPSSVSWDAEPFFSAPEEARRRFLYRIHAEIDSSQRRLP-YPFVERII 298 >gi|59801231|ref|YP_207943.1| hypothetical protein NGO0820 [Neisseria gonorrhoeae FA 1090] gi|75432494|sp|Q5F8F6|TILS_NEIG1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|59718126|gb|AAW89531.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] Length = 426 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 16 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 73 LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 129 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 186 Query: 204 VRR 206 R Sbjct: 187 FRH 189 >gi|117921240|ref|YP_870432.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3] gi|117613572|gb|ABK49026.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3] Length = 465 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 7/183 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L L + + + I V H L A + + Sbjct: 25 LVLAYSGGVDSEVLAYGLSEFA--KHHPEFHYQLIYVHHGLSPNADAWAEHCQTRAANYG 82 Query: 82 IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + P+ + A AR+ RY I +H K + +++TAH DDQLET+ + + Sbjct: 83 LPITVERVQLTLGPRVSIEAEARKMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140 Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R KG+ G + L + + RP L RE I +F R + ED SN DD+ Sbjct: 141 RGQGPKGLAAMGQIQMLPLGEKGACLQVRPLLDISREQIEAFAQTRQLVHIEDESNQDDK 200 Query: 199 FER 201 ++R Sbjct: 201 YDR 203 >gi|182420057|ref|ZP_02951291.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521] gi|237669480|ref|ZP_04529460.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376094|gb|EDT73681.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521] gi|237654924|gb|EEP52484.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 464 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 27/195 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80 +LVA+SGG DS+ LL L+++ ++ + I+ A ++H LR+ A ++ YV +C L Sbjct: 21 VLVALSGGPDSVCLLNILYNLKAELN---IEIGAAHLNHLLRDKDAFEDEEYVKILCKSL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ + + A R+ARY + K T I TAH +DQ ET+ Sbjct: 78 DIPCFVKRVDINKCSKDKKMSSEMAGRDARYNFFDDIVKDKGYTKIATAHNANDQAETIL 137 Query: 137 MRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 R R G G+ G+C D I+ RP L R+++ ++ N+ Sbjct: 138 FRLMR-----GSGIEGLCGIKVRRDKII--------RPILCLSRKEVEEYIEINNLKPRI 184 Query: 191 DPSNTDDRFERVRVR 205 D +N + + R ++R Sbjct: 185 DKTNFEKIYNRNKIR 199 >gi|242240378|ref|YP_002988559.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703] gi|242132435|gb|ACS86737.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703] Length = 448 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 12/190 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + + LVA SGG DS + LH ++ + I+ A V H L A + Sbjct: 17 RQIDADSRFLVAYSGGLDS---CVLLHLMMRLQQQLPIEVRAAYVHHGLNPRADAWADHC 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C RI V++ + G+ A+AREARYA + + ++TA DDQ E Sbjct: 74 RRQCQLWRIPFEVLTVHVDARRGGIEASAREARYAALRTSLQPQET--LLTAQHQDDQSE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCED 191 T + +R G G +G+ + + RP L RE + + + W ED Sbjct: 132 TFLLALKR-----GSGPAGLASMAAFSASGAFRQRRPLLNMSREQLACYANTHQLRWIED 186 Query: 192 PSNTDDRFER 201 SN+D+RF+R Sbjct: 187 DSNSDERFDR 196 >gi|194098553|ref|YP_002001615.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945] gi|193933843|gb|ACF29667.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945] gi|317164226|gb|ADV07767.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae TCDC-NG08107] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VRR 206 R Sbjct: 206 FRH 208 >gi|121634879|ref|YP_975124.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18] gi|120866585|emb|CAM10336.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18] Length = 445 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 35 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E I + AH DDQ+ET + R Sbjct: 92 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 147 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205 Query: 204 VR 205 R Sbjct: 206 FR 207 >gi|288802304|ref|ZP_06407744.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella melaninogenica D18] gi|288335271|gb|EFC73706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella melaninogenica D18] Length = 456 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL+ L + + A+ + LR E+ +DE ++ D+C R Sbjct: 22 LVALSGGADSVALLLCLKEL-------GYRVEAVHCNFNLRGEESLRDE-QFCEDLCQRE 73 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + + + AARE RY + + + A + H +D +ET+ Sbjct: 74 NIPFHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGANGVCVGHHKEDSVETIL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GLSG+ + N + RP L R++I +L Q+ +S+ D +N Sbjct: 134 INLVR-----GTGLSGLMG--IRPRNHDVIRPLLCVTRQEIEDYLRQQAVSFVTDSTNLI 186 Query: 197 DRFERVRVR 205 D R ++R Sbjct: 187 DDVVRNKIR 195 >gi|237750957|ref|ZP_04581437.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879] gi|229373402|gb|EEO23793.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879] Length = 369 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 50/373 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS L L KI+F +D+ R +KDEV Y + + + Sbjct: 25 LLAFSGGIDSTALFFVLME-------HKIEFDIAIIDYGKRSQSKDEVLYAKSLAKQYKK 77 Query: 83 -AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQ 140 ++++S +K AR RY + T + ++TAH FDD+LE +M+ S Sbjct: 78 QCYTLISESITKD---FEHNARNIRYDFFHKIIITHDYHNLITAHHFDDRLEWFFMQLSC 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 +G + + ++++ ++ RPF+ +++I ++ NI + D SN+D ++ Sbjct: 135 GAGLNTLLGFHDITERMIHNKVYYLVRPFITYTKQEILNYNHTNNIKYFIDTSNSDISYK 194 Query: 201 RVRVRR---------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 R R+ F+ + YL+ ++ A L P ++ V + + Sbjct: 195 RNLFRQQLSGLMNRDFINGVKKSFAYLEKER------------ARLYP-HVVVCVDYNLF 241 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 I + ++ T+ R+ + G Q ++R + LK+G CV G++VI + Sbjct: 242 ICKSHIHEIHTIDMLTKRLGYIMSGKQKD-----ELQRTL--LKNG--ACVMGGKIVIAK 292 Query: 312 RANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDSLIQIGPQS---YRKADV 364 +F+++ +R L L + ++ + + I+I Q YR ++ Sbjct: 293 NESFIFVGIEIRWLIKAFLEKRREKYIQLPCNIKHLYNLIQKDSIKIPKQEREKYRIQNI 352 Query: 365 PSGIPPIIAQRAL 377 P I P++ +L Sbjct: 353 PPKIRPLLYINSL 365 >gi|218961145|ref|YP_001740920.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus Cloacamonas acidaminovorans] gi|167729802|emb|CAO80714.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus Cloacamonas acidaminovorans] Length = 482 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 16/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +L+ SGG+DS +L + R + I ++H +R E+ DE +V +C Sbjct: 26 LLLGCSGGADSNAMLYLFSRL---RVPLNLTLLVIHINHQIRGAESDADE-DFVKQLCQD 81 Query: 80 LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L I V+ K P+TG L AR+ R+ + ++ ++ N I+ AH +DQ ETV + Sbjct: 82 LNIP--VIIRKIVVPETGNLENQARKLRFEVFNKILESYNFDKILLAHQKEDQAETVMLN 139 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G+SGM + + + P L R+++ L Q ISW D SN + + Sbjct: 140 FLR-----GAGISGMAG--IKGITGKVVHPLLCFSRKELEEVLKQAGISWRTDSSNLETK 192 Query: 199 FERVRVR 205 F R +R Sbjct: 193 FRRNLLR 199 >gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 442 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L + RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14] gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 442 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L + RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|27365224|ref|NP_760752.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6] gi|61217354|sp|Q8DBE4|TILS_VIBVU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27361371|gb|AAO10279.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6] Length = 436 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 15/204 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL H + + A+ V H L A V+ + C Sbjct: 22 LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139 I +V + Q + AR ARY + H INA L++T DDQ+ET + Sbjct: 79 IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M + + I RP L RR++I + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLHWVEDESNQDTRY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223 + R F+R L AL + F Sbjct: 193 D----RNFLRQQILPALSERWPSF 212 >gi|153825370|ref|ZP_01978037.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2] gi|149741054|gb|EDM55123.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY ++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEFVQLDVASGESIEKLAREARYRALASH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|114048184|ref|YP_738734.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7] gi|113889626|gb|ABI43677.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7] Length = 465 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 7/183 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L L + ++ + I V H L A ++ + Sbjct: 25 LVLAYSGGVDSEVLAYGLSEFA--KHHPELHYQLIYVHHGLSPNADAWAKHCQTRAASYG 82 Query: 82 IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + P+ + A AR RY I +H K + +++TAH DDQLET+ + + Sbjct: 83 LPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140 Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R KG+ G + L + + +RP L RE I F R + ED SN DD+ Sbjct: 141 RGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDESNQDDK 200 Query: 199 FER 201 ++R Sbjct: 201 YDR 203 >gi|325132247|gb|EGC54941.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M6190] Length = 436 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E I + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SNTD + R R Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|229513885|ref|ZP_04403347.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21] gi|229349066|gb|EEO14023.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP IL+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY ++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|227499301|ref|ZP_03929413.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098] gi|227218652|gb|EEI83886.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098] Length = 456 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++ SGG DS L+ L ++ + +F + ++H R+ A + + V +L Sbjct: 22 HIIIGASGGPDSQFLIYGLKDLMKEMNFT---ITLAHLNHLHRKEAILDEQLVEATAKKL 78 Query: 81 RI--AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + S + Q GL + A R RY + I AH DDQ ETV Sbjct: 79 GLDFKKKACSMDSYAKQEGLSSEDAGRRLRYEFFRQLKGDNPKAKIAVAHNLDDQAETVL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G G+ G+ + Y N I RP L R+ +I ++L + NI++ D +N + Sbjct: 139 MRIIR-----GTGIEGLR-AMDYK-NDDIIRPILDIRKSEILAYLNENNIAYAIDKTNLE 191 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 192 TDYTRNKIR 200 >gi|294635147|ref|ZP_06713656.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685] gi|291091452|gb|EFE24013.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685] Length = 439 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 14/185 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79 H+LVA SGG DS LL AL + + R +++ + V H L A V + VC Sbjct: 19 HLLVAFSGGLDSTVLLHALVQLRATR-LPQLRLRVVHVHHGLSAFADQWVEHCESVCHHW 77 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + H V + + + A A ALI H ++TA DDQ ET Sbjct: 78 QVPLHVLHVQVDTQRNSVEAAARDARYRAIAALIGSHET------LLTAQHLDDQCETFL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R GLS M +++ + RP L R + S+ +++W ED SN D Sbjct: 132 LALKR--GSGPTGLSAMAESMPF-FATEQRRPLLGLSRRQLLSYAQAHHLTWVEDDSNAD 188 Query: 197 DRFER 201 RF+R Sbjct: 189 ARFDR 193 >gi|15616731|ref|NP_239943.1| cell cycle protein MesJ [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386907|sp|P57211|TILS_BUCAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25325269|pir||E84942 cell cycle protein mesJ [imported] - Buchnera sp. (strain APS) gi|10038794|dbj|BAB12829.1| cell cycle protein mesJ [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS + L+ +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFV 208 +R V Sbjct: 187 FIRNEV 192 >gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1] gi|61216741|sp|Q9HXZ3|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 442 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L + RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|194333384|ref|YP_002015244.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271] gi|194311202|gb|ACF45597.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271] Length = 336 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 89/331 (26%), Positives = 135/331 (40%), Gaps = 64/331 (19%) Query: 3 LSPIESV---RFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 L+PIE + R LV + +L AVSGG DSM L+ L S F ++ + Sbjct: 5 LTPIEKAFVEQLTTRKLVEKGSSVLAAVSGGPDSMALMHLLQSARPVLHF------SLEI 58 Query: 59 DHCL-----RETAKDEVRYVSDVCSRL----RIAH-----SVVSWKNSKPQTGLMAAARE 104 HC RE+ DE V++ +RL I H SWK S +T AR Sbjct: 59 AHCHFGLRDRESDLDES-LVAEEAARLGLRCHIRHFDTRRDAGSWKKSIEET-----ARI 112 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNL 163 RY SE +T + T H +D ET+ R + G+ G+ T++ Sbjct: 113 ERYGFFSELQRTCGFDRVATGHHVNDNAETILFNLFRGTSVPGLKGIRAHHGTLI----- 167 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSN----TDDRFERVRVRRFVRDIDLHALYLK 219 RP L RRED+ S++ +NI++ D SN D F R RV + + H L Sbjct: 168 ---RPMLLMRREDVMSYIDAKNIAYRTDASNFGIEPDRNFIRHRVIPVIEERFQHKLLPS 224 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 +++ + A + ++L +H + + + D LRVS Sbjct: 225 LRRISE--------QAGELEEFLELHFEKLQQENDGLRLCDDC-----LRVS-------- 263 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 L + ER LF ++ + C+ VID Sbjct: 264 DLARLTTFERKELFKRALQELCIEPSSKVID 294 >gi|219681486|ref|YP_002467871.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682042|ref|YP_002468426.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471165|ref|ZP_05635164.1| cell cycle protein MesJ [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621775|gb|ACL29931.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624329|gb|ACL30484.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085853|gb|ADP65935.1| cell cycle protein MesJ [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086423|gb|ADP66504.1| cell cycle protein MesJ [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS + L+ +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFV 208 +R V Sbjct: 187 FIRNEV 192 >gi|218259686|ref|ZP_03475329.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii DSM 18315] gi|218224957|gb|EEC97607.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii DSM 18315] Length = 444 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +LV VSGG+DS+ LL ++L + + + +V HC LR E+ +DE ++V + Sbjct: 21 VLVGVSGGADSIALL----TILVESGY------SCTVAHCNFHLRGDESLRDE-QFVREY 69 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L + + + K + + AARE RY E A I AH DD + Sbjct: 70 ARKLDVPFLMTDFDTRKYAASRRLSIEMAARELRYDWFEEQRVATGAQAIAVAHHRDDSV 129 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ M R G G+ G+ + N ++ RP L REDI +L +R + + D Sbjct: 130 ETLLMNLVR-----GTGIRGLSG--IRPKNGFVVRPLLAVSREDILEWLARRGLRYVTDS 182 Query: 193 SNTDDRFERVRVR 205 +N D + R +R Sbjct: 183 TNLSDAYTRNFIR 195 >gi|183179458|ref|ZP_02957669.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3] gi|183012869|gb|EDT88169.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY ++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|327480171|gb|AEA83481.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri DSM 4166] Length = 441 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL AL + LS+R + AI V H L+ + VC +L + Sbjct: 34 VAFSGGLDSTVLLHAL-TRLSERQALPV-IRAIHVHHGLQAAGDHWPAHCQRVCDQLGVT 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V P L AAR+ARY S A L++T DDQ ET+ R R Sbjct: 92 LEIVR-VRVVPGASLERAARDARYQAFS--ACVGEGELLLTGQHRDDQAETLLFRLLRGA 148 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + RP L R ++ + ++W EDPSN + R Sbjct: 149 GVRG--LAAMPDVRSMGRGS-LVRPLLEVSRAELEDYARANGLAWVEDPSNQQLEYSRNF 205 Query: 204 VRRFV 208 +RR V Sbjct: 206 LRRQV 210 >gi|320155609|ref|YP_004187988.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O] gi|319930921|gb|ADV85785.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O] Length = 436 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 15/204 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL H + + A+ V H L A V+ + C Sbjct: 22 LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139 I +V + Q + AR ARY + H INA L++T DDQ+ET + Sbjct: 79 IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M + + I RP L RR++I + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLHWVEDESNQDTRY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223 + R F+R L AL + F Sbjct: 193 D----RNFLRQQILPALSERWPSF 212 >gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1] Length = 442 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L + RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QASLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|258645728|ref|ZP_05733197.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470] gi|260403097|gb|EEW96644.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470] Length = 473 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 84/187 (44%), Gaps = 13/187 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL AVSGG DS+ LL+AL + KI V+H LR A E +V VC Sbjct: 27 ILAAVSGGPDSLALLLALKLLAVKE---KINIGCCCVNHHLRAAAGKEAEFVESVCREWN 83 Query: 82 IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V + + AAR+ RY + E A+ I AH DDQ ETV Sbjct: 84 IPFILKEVDVQSAVRNGGSIETAARDFRYKALREAARGGRYAKIAVAHHGDDQAETVLYH 143 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G++G+ + + +N I RPFL + +I+ FL + C D SN + Sbjct: 144 LLR-----GSGVTGL--SGMKPINGDIIRPFLCVSKNEIKDFLKDFSYVPCHDESNDVED 196 Query: 199 FERVRVR 205 R R+R Sbjct: 197 AVRNRIR 203 >gi|239500682|ref|ZP_04659992.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB900] Length = 418 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 8 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 66 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 118 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + +Q + + +DP N D ++RV R Sbjct: 119 LDLTREQIALWAVQLEVKYIDDPMNYDTHYDRVWCRE 155 >gi|20808759|ref|NP_623930.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|61217386|sp|Q8R7K9|TILS_THETN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|20517403|gb|AAM25534.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 467 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ +SGG DS+ +L L ++ + +K + V+H +R E AK + +V +C L Sbjct: 30 IVMGISGGPDSLCMLDVLFNL---KGKFNLKLYVVHVNHMIRGEDAKKDAEFVEKLCKDL 86 Query: 81 RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + K A R RY E K + I AH +D ETV Sbjct: 87 DLPFFLFEENIPYLAKKMGLSEEQAGRYVRYKAFEETLKRVGGNKIAVAHNKNDVAETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL G+ + +N I RP + R +I +L +N+ D +N + Sbjct: 147 LNILR-----GTGLRGLIG--IKPVNGNIIRPLIEIERREIEKYLKDKNLHPRIDHTNYE 199 Query: 197 DRFERVRVR 205 D + R ++R Sbjct: 200 DLYTRNKIR 208 >gi|307266280|ref|ZP_07547821.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918730|gb|EFN48963.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 458 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E + + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLREVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + RE+I +++ ++++ D +N Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIENYIKEKDLKPVIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|229522189|ref|ZP_04411606.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80] gi|229341114|gb|EEO06119.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLSRYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|121726536|ref|ZP_01679785.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52] gi|121630989|gb|EAX63368.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS +L+AL + D FG +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQMETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|310287911|ref|YP_003939169.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17] gi|309251847|gb|ADO53595.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17] Length = 372 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L V + S+G I+ A+ VDH L+E + + + + C L Sbjct: 45 VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSDEVAQSAARRCCGLG 101 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +VV + S + AAAR+ARY +++ A+ +A ++ AHT DDQ ETV M Sbjct: 102 LDPVTVVPVEVSGDGHSVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161 Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ L+GM + D + +RPFLR R D I+W +DP+N D Sbjct: 162 R---SSGLDSLAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214 >gi|311087006|gb|ADP67086.1| cell cycle protein MesJ [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 440 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS + L+ +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFV 208 +R V Sbjct: 187 FIRNEV 192 >gi|260495550|ref|ZP_05815675.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_33] gi|260196892|gb|EEW94414.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_33] Length = 448 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---VRYVSDV 76 I+V SGG DS+ L+ L + ++F K + ++H LR + DE Y Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGKDAVSDENFSFEYAKK- 78 Query: 77 CSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + L I + K + G L RE RY SE K + A I TAH DDQ+ET Sbjct: 79 -NNLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKVGANKIATAHNKDDQIET 137 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R G L G+ + + N I RP ++DI +L + I + D +N Sbjct: 138 FLFRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILDYLNKNEIQYKIDKTN 190 Query: 195 TDDRFERVRVR 205 ++ F R +R Sbjct: 191 FENEFTRNSIR 201 >gi|198273466|ref|ZP_03206002.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|198249986|gb|EDY74766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 326 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L +S V++ RE+A + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ A AR RY E K N + AH FDD LET YM Sbjct: 69 PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + ++ + RP L ++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFICKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALY 217 D +ER RVR+ + + L+ +Y Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204 >gi|291616365|ref|YP_003519107.1| TilS [Pantoea ananatis LMG 20103] gi|291151395|gb|ADD75979.1| TilS [Pantoea ananatis LMG 20103] Length = 435 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 7/185 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL L + R +++ A+ V H L A + +C R + Sbjct: 14 LVVAFSGGLDSTVLLHQLRAWQQARPQSRLR--ALHVHHGLSPNADSWAAHCLCLCERWQ 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V+ + + G+ AAAR+ RY + + A + L +TA DDQ ET+ + +R Sbjct: 72 IPCEVLRVQVTDQGQGIEAAARQVRYQALGQ-ALCADEKL-LTAQHLDDQCETLLLALKR 129 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ T L RP L R + + + W ED SN D R++R Sbjct: 130 GSGPAGLAAMPAATTFAGHALL---RPLLNHSRLSLEQYAEAHQLVWVEDESNQDQRYDR 186 Query: 202 VRVRR 206 +R+ Sbjct: 187 NFLRQ 191 >gi|308233644|ref|ZP_07664381.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae DSM 15829] gi|328944407|ref|ZP_08241869.1| PP-loop family protein [Atopobium vaginae DSM 15829] gi|327490991|gb|EGF22768.1| PP-loop family protein [Atopobium vaginae DSM 15829] Length = 509 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 33/214 (15%) Query: 20 AHILVAVSGGSDSMGL-LIALHSVLSDRS------FGKIKFSAISVDHCLR-ETAKDEVR 71 A +L+ VSGG+DS L L+A S L K + + V+H LR +A+ + Sbjct: 24 APVLLMVSGGADSSALTLLAATSQLDLEDGRGCAPIAKERLHILHVNHGLRGASAQADEE 83 Query: 72 YVSDVCSRL----RIAH----SVVSWKNSKPQTGLMAAAREARYALISE---------HA 114 +V ++ S +AH + + K + + R RY + E H Sbjct: 84 FVLELASHFGIVFHVAHVDVARLAAQKTLSGEKNIENVGRMVRYKVAFELIKKLCQQTHT 143 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +A I+TAHT D++ET ++ A KG LSG+C + I RP L Sbjct: 144 RVQDAR-ILTAHTASDRVETFFLN-----ATKGSALSGLCS--IPRRRSIIVRPLLDTTH 195 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 E++ L Q ++WCED +N D + R +R + Sbjct: 196 EELCDMLTQHGMTWCEDQTNHDTHYARAYMRHVI 229 >gi|19705273|ref|NP_602768.1| cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|61216676|sp|Q8RHN5|TILS_FUSNN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|19713236|gb|AAL94067.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 448 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QYFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE + + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|123430775|ref|XP_001307953.1| PP-loop family protein [Trichomonas vaginalis G3] gi|121889608|gb|EAX95023.1| PP-loop family protein [Trichomonas vaginalis G3] Length = 444 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 17/186 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--LR 81 + VSGG+DSM L + D + I ++H +RETAK + +V C ++ Sbjct: 23 LGVSGGADSMYLFYNFMDLKEDWNLDII---VCHLNHGIRETAKRDEEFVKKSCQAYGIK 79 Query: 82 IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V+ + + A R RY E+++ I+TAH +D++ETV Sbjct: 80 FISKTVNMDEFAREKKFSSEEAGRILRYEFFRENSQ---GRKILTAHNANDRVETVLFNI 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G GL G+ + +N I RP + +RE+I +L + + + +D +N ++ + Sbjct: 137 MR-----GTGLKGLSG--ITHVNGDIYRPLINIKREEIEDYLHKNKLQYFDDETNFEEIY 189 Query: 200 ERVRVR 205 R ++R Sbjct: 190 TRNKIR 195 >gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I] gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic archaeon RC-I] Length = 308 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 13/128 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI VA+SGG DS L L + RS IKFSAI+VD + + + Y ++C RL Sbjct: 49 HIAVAMSGGKDSAVTLSILVDTFTTRS--NIKFSAITVDEGIEGYRNESIPYAKELCDRL 106 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLIMTAHTFD 129 + H VVS+K T +RE + A L++ A+ I A + T H D Sbjct: 107 GVPHYVVSFKEEIGHTLDDILSRERKEASCTYCGVFRRTLLNRKAREIGANKLATGHNLD 166 Query: 130 DQLETVYM 137 D+ + V + Sbjct: 167 DEAQVVLL 174 >gi|260587360|ref|ZP_05853273.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583] gi|260542227|gb|EEX22796.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583] Length = 451 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 25/199 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 +H++V +SGG+DS+ LL L + F + A+ V+H +R E +DE + VC Sbjct: 21 SHVIVGLSGGADSVCLLKLLKEYKKQQEF---QLYAVHVNHHIRGEEAVRDE-EFSKAVC 76 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT---LIMTAHTFDD 130 +L + +V + + + L A R R + K I + +I AH +D Sbjct: 77 KKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKVMKNIKVSGRKMIALAHHEND 136 Query: 131 QLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 ETV R G+G +SG D+ + RP L +R +I +L + I Sbjct: 137 NAETVLHNLMRGSGAAGLGGIRPVSGEKDSYI--------RPLLFVKRAEIEKYLKGQGI 188 Query: 187 SWCEDPSNTDDRFERVRVR 205 SW D +N + + R ++R Sbjct: 189 SWVTDSTNEETEYTRNKIR 207 >gi|113970960|ref|YP_734753.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4] gi|113885644|gb|ABI39696.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4] Length = 465 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 7/183 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS L L + ++ + I V H L A ++ + Sbjct: 25 LVLAYSGGVDSEVLAYGLSEFA--KHHPELHYQLIYVHHGLSPNADAWAKHCQTRAASYG 82 Query: 82 IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + P+ + A AR RY I +H K + +++TAH DDQLET+ + + Sbjct: 83 LPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140 Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R KG+ G + L + + +RP L RE I F R + ED SN DD+ Sbjct: 141 RGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDESNQDDK 200 Query: 199 FER 201 ++R Sbjct: 201 YDR 203 >gi|297159327|gb|ADI09039.1| tRNA(Ile)-lysidine synthase [Streptomyces bingchenggensis BCW-1] Length = 375 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G ++ ++VDH L++ + EVR ++V RLR Sbjct: 38 VLVACSGGADSMALASAL--AFEAPKLG-VRAGGVTVDHGLQDGS--EVR-AAEVAERLR 91 Query: 82 IAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + V ++ P+ A YA + A+ A ++ HT DDQ ET Sbjct: 92 LLGLEPVECIGVSVGRDGGPEAAARDAR----YAALDTAAERHGAVAVLLGHTRDDQAET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM + RPFLR R+ +R L +++ +DP N Sbjct: 148 VLLGLARGSGIR--SLSGMAQ--VSGAGGRYRRPFLRLDRQTVRRACLAQSLPVWDDPHN 203 Query: 195 TDDRFERVRVR 205 D + R RVR Sbjct: 204 VDPAYTRSRVR 214 >gi|296328516|ref|ZP_06871035.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154325|gb|EFG95124.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 448 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QYFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K + G L RE RY SE + + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ + + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|254286449|ref|ZP_04961406.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226] gi|150423398|gb|EDN15342.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226] Length = 440 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 13/201 (6%) Query: 12 FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L YP +L+A+SGG DS LL L + + +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQVLLALLARGRDELGW---DVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127 ++ C + +A + + + + AREARY +++ H +NA TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ L RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D SN D R+ER +R V Sbjct: 179 WVIDESNADIRYERNFLRHQV 199 >gi|255013262|ref|ZP_05285388.1| putative cell-cycle protein [Bacteroides sp. 2_1_7] Length = 438 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 I ++R ++ R L +LV +SGG+DS+ LL L ++ + I++ HC Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 LR E+ +DE + + L +I +S+ K + AARE RYA E Sbjct: 52 FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + + AH DD +ETV M R G G+ GM + N +I RP L Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 REDI ++L + ++ D +N D F R+ V + +I+ A + + L Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273 + A I Y+ R + +S D L+I + T+L+ LL+ VS Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332 I PG LF S R++ DR ++LWIT + T +L P Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320 Query: 333 EE 334 E+ Sbjct: 321 EK 322 >gi|239980354|ref|ZP_04702878.1| cell cycle protein [Streptomyces albus J1074] gi|291452216|ref|ZP_06591606.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074] gi|291355165|gb|EFE82067.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074] Length = 412 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 31/204 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +LVA SGG+DSM L AL G I+ I+VDH L+ + +DV +RL Sbjct: 97 VLVACSGGADSMALASAL--AFEAPRLG-IRAGGITVDHGLQYGSDAR---AADVVARLT 150 Query: 81 -------------------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R AH + + G AAAR+ARYA + E A+ + A Sbjct: 151 ALGLDPVESAAVRVAAASDRTAHG-APYAGGARRVGPEAAARDARYAALDEAAERLGAAA 209 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R + LSGM + D + RPFL+ R+ R+ Sbjct: 210 VLLGHTRDDQAETVLLGLARGSGIR--SLSGMA-AVSGDSGRY-RRPFLQLDRQTARTAC 265 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 L +++ +DP NTD + R R+R Sbjct: 266 LAQSLPVWDDPHNTDPAYTRSRLR 289 >gi|326391164|ref|ZP_08212709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992797|gb|EGD51244.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 458 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E + + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLREVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + RE+I +++ ++++ D +N Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIENYIKEKDLKPIIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|254225768|ref|ZP_04919373.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51] gi|125621674|gb|EAZ50003.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51] Length = 440 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG DS +L+AL + D FG +A+ V H L A ++ C + Sbjct: 20 ILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQRCCREVG 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139 +A + + + + AREARY +++ H +NA TL++ DDQLET + Sbjct: 77 MACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQHADDQLETFLLAL 133 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG+ L RP L R+ I ++ Q ++W D SN D R+ Sbjct: 134 KRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVIDESNADIRY 190 Query: 200 ERVRVRRFV 208 ER +R V Sbjct: 191 ERNFLRHQV 199 >gi|326336198|ref|ZP_08202370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691707|gb|EGD33674.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 439 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 23/212 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 ++ I++A+SGG DS+ L L + +I F + LR E ++ + +V Sbjct: 15 FLWQKRIILAISGGIDSVVLAYLLKEL-------QIPFLMAHCNFQLRGEESEGDQHFVE 67 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +L + V + + AAR RY + + I+TAH +D Sbjct: 68 ALAQKLSMPLEVKRFATKEYGKTHALNTQLAARVLRYEWFEQIRQKKGYDYILTAHQAND 127 Query: 131 QLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET + + R KG+ G+ +TIL RP L RE+I +F + NI W Sbjct: 128 SWETFLINTSRGTGLKGLLGVPVQNNTIL--------RPLLGFSREEILAFAKENNIIWR 179 Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHALYLK 219 ED SN D + R ++R + I +H +LK Sbjct: 180 EDSSNNSDAYTRNKIRHHISPILSQIHPNFLK 211 >gi|167518720|ref|XP_001743700.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777662|gb|EDQ91278.1| predicted protein [Monosiga brevicollis MX1] Length = 475 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 92/376 (24%), Positives = 148/376 (39%), Gaps = 72/376 (19%) Query: 22 ILVAVSGGSD---------------------------SMGLLIALHSVLSDRSFGKIKFS 54 +LVAVSGG D SM L+ ALH + G+++ Sbjct: 24 LLVAVSGGPDRCEWDDATSMATCAMCWLIGHAPACICSMALVHALH----QQQPGRVR-- 77 Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISE 112 A VDH LR + DE V R I S + W + P++ A AR RY + Sbjct: 78 AHLVDHRLRPESTDEAHQVMSELQRHSIVCGMSTLQWA-AAPRSNTQALARTERYNALVA 136 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDL 161 A I+TAH DDQ+ET+ MR LSG+ + + L Sbjct: 137 AAHQHGCQAILTAHHADDQVETILMRI--------CNLSGLVGALGIRARAHWRSERHGL 188 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-----RFVRDID-LHA 215 ++RP L + D+ + ++ D SN D++ER R+R R + D L Sbjct: 189 QAPLARPLLHLTKADLVQYCQTNDVRTVNDCSNDSDKYERNRLRFALAARQQQTPDTLGE 248 Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA--- 272 +Y + + LR+++ L L + I + L + ++ ++A Sbjct: 249 MYALAENWTVLRLELEGEARELAQSALHHDVHPQIWSIESKLVARAPRAVQIVLITACLV 308 Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN----FLWITRAVRNL-PT 327 A+ GG+ P R +E ++ L+ + +G V +R+ + LW + + P Sbjct: 309 AVSGGR--QPDPRQVEALVSTLEQSQPVRGQVGVVSFERQGSNHALHLWRSPLRADFEPL 366 Query: 328 LILYPEETT-VWDGRY 342 I P WDGR+ Sbjct: 367 TIQSPTPAAWYWDGRF 382 >gi|282875439|ref|ZP_06284311.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135] gi|281295796|gb|EFA88318.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135] Length = 166 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 16/128 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 AHI+VAVS G DSM LL +S+L+D K + + V+H LRE + +E ++ + C Sbjct: 11 KAHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCH 67 Query: 79 RLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + I +V+ NS Q AR+ RY + + A +++TAH DD Sbjct: 68 QHHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDD 122 Query: 131 QLETVYMR 138 QLET+ R Sbjct: 123 QLETIIYR 130 >gi|225561815|gb|EEH10095.1| PP-loop family protein [Ajellomyces capsulatus G186AR] Length = 688 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH RE + DE + V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFIVDHLAREGSTDEAQKVAGWLR 98 Query: 79 RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ W + + L AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178 >gi|171920332|ref|ZP_02931673.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902755|gb|EDT49044.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 330 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L + V++ RE++ + + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCKKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AR RY E K N + AH FDD LET YM Sbjct: 69 IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + I+ + RP L R++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223 D +ER RVR+ + L+ +Y KKF Sbjct: 183 LDIYERNRVRKIISSWSLNEVY-DFKKF 209 >gi|84389775|ref|ZP_00991327.1| Cell cycle protein MesJ [Vibrio splendidus 12B01] gi|84376876|gb|EAP93750.1| Cell cycle protein MesJ [Vibrio splendidus 12B01] Length = 444 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +S + P ++VA SGG DS +L+ L + + ++ G I+ A+ V H L + A Sbjct: 14 QSALKPNRLIVAFSGGVDSR-VLLELAAQYA-QTHG-IECCAVHVHHGLSKNADHWAEQC 70 Query: 74 SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C L ++ +V VS ++ + AR+ARY +H +++T DDQ Sbjct: 71 QTWCDALSVSLAVERVSLDIDSGES-VEKLARDARYNAFQKHLSF--GDVLITGQHIDDQ 127 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + +R KG LS M + + N I RP L R DI ++W ED Sbjct: 128 LETFLLALKRGSGPKG--LSSMAKMMPF-ANAHIVRPLLSVTRTDIEGAARDMALTWVED 184 Query: 192 PSNTDDRFERVRVRRFV 208 SN D RF+R +R V Sbjct: 185 ESNQDLRFDRNFIRHQV 201 >gi|297545407|ref|YP_003677709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843182|gb|ADH61698.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 464 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E A+ + ++V ++C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEARRDAQFVENICCKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E K + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + R++I +L ++ + D +N Sbjct: 137 FLNLIR-----GAGMTGLIG--IKPVNGNIIRPLIEIERKEIEIYLKEKGLKPALDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|55820113|ref|YP_138555.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus LMG 18311] gi|55822003|ref|YP_140444.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus CNRZ1066] gi|61217175|sp|Q5M217|TILS_STRT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217177|sp|Q5M6K9|TILS_STRT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|55736098|gb|AAV59740.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus LMG 18311] gi|55737988|gb|AAV61629.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus CNRZ1066] Length = 421 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ + Sbjct: 21 VLVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEENYLRHWAKEHK 77 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +S S K S+ AAR RY K + + ++TAH DDQ ET++MR Sbjct: 78 VPFHYSAFSGKFSE------NAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+CD + I RPFL ++ + ED SN+ + Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKDQLPVTF------HFEDRSNSSLAY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|116626984|ref|YP_819603.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus LMD-9] gi|116100261|gb|ABJ65407.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus LMD-9] gi|312277429|gb|ADQ62086.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus ND03] Length = 421 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ + Sbjct: 21 VLVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEENYLRHWAKEHK 77 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +S S K S+ AAR RY K + + ++TAH DDQ ET++MR Sbjct: 78 VPFHYSAFSGKFSE------NAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+CD + I RPFL ++ + ED SN+ + Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKDQLPVTF------HFEDRSNSSLAY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|327402415|ref|YP_004343253.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823] gi|327317923|gb|AEA42415.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823] Length = 415 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 28/194 (14%) Query: 21 HILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVS 74 +I VA S G DS LL AL HS + +++ LRE + KDE +V Sbjct: 17 NICVACSAGLDSTVLLEALIQLGHSP-----------KILHINYQLREEDSEKDE-EFVR 64 Query: 75 DVCSRLRIAHSVVSWKNSKPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 D+ + + V+ + + AAR R+A + +A I+ AH DDQ Sbjct: 65 DLAKKYELEIEVIHCPKEITKGKGINIQEAARNFRHAHFQQFIHENSANRILLAHHQDDQ 124 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET +++ R G G+ G+ ++ I RPFL +E++R F L+ + W ED Sbjct: 125 IETFFLQLLR-----GSGIFGLGG--MHAERKGIIRPFLSLTKEELRDFALENKLQWRED 177 Query: 192 PSNTDDRFERVRVR 205 SN +++++R + R Sbjct: 178 WSNQENKYKRNQFR 191 >gi|121998224|ref|YP_001003011.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1] gi|121589629|gb|ABM62209.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1] Length = 440 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 97/223 (43%), Gaps = 32/223 (14%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL AL V R +A+ +DH L + VC RL + Sbjct: 23 VAFSGGRDSTALLHALAEV---RDRLPAPLAAVHIDHGLHPESARWAEACESVCERLGVG 79 Query: 84 HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V S Q GL AAAREARY E ++ AH DDQ ET +R+ R Sbjct: 80 LECRRVVVPPSAGQ-GLEAAAREARYRAFGE--LLAAGDCLVLAHHADDQAETFLLRALR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLW-------ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 G GL G+C + W + RP L R + ++L R++ W EDP+N Sbjct: 137 -----GGGLHGLCA-----MPAWRPLGRGRLVRPLLEVPRTALTAYLQSRSLDWIEDPAN 186 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 D +RV +R V L + ++ D + +AVA L Sbjct: 187 RDPAHDRVYLRERV-------LPVLAARWPDATGHLQSAVASL 222 >gi|170760449|ref|YP_001788867.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch Maree] gi|169407438|gb|ACA55849.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch Maree] Length = 468 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + + R ++R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QNIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G I+LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFINLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|325264332|ref|ZP_08131063.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5] gi|324030403|gb|EGB91687.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5] Length = 470 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ +SGG+DS+ LL L L R I+ A+ V+H LR E AK + +V ++C Sbjct: 20 VIAGISGGADSVCLLFVL---LKLREEMGIEIVAVHVNHGLRGEAAKRDEEFVQELCREH 76 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R+ V V + K + + A R R + T I AH +D ET+ Sbjct: 77 RVKCVVYRENVESISKKRKQSVEEAGRVVRREAFEKTLVECGGTKIAMAHHQNDNAETLL 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R KG+G + + I RP L R +I ++ +C D +N + Sbjct: 137 MNLARGTGLKGLGG-------IQPVAGKIIRPLLCLNRREIEQYVEAIGCGYCRDETNDE 189 Query: 197 DRFERVRVRRFV 208 D + R R+R V Sbjct: 190 DDYTRNRLRHQV 201 >gi|311743365|ref|ZP_07717172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Aeromicrobium marinum DSM 15272] gi|311313433|gb|EFQ83343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Aeromicrobium marinum DSM 15272] Length = 324 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 11/184 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG+DS+ L A+ + ++ R SA+ VDH L+ + + ++ C L Sbjct: 29 VVLGVSGGADSL-ALAAVTAFVARRE--AWDVSAVVVDHDLQPGSSEVAARAAEQCRGLG 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + VV + G AAAR AR+ + A A +I AHT DDQ ETV + R Sbjct: 86 LRAEVVGVEVGS-AGGPEAAARTARHGALRSAALAAGAEVICLAHTLDDQAETVLLGLGR 144 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM ++ + RP L RR D + W +DP N D R Sbjct: 145 GSGARS--LSGMAG-----VDGLVRRPLLGLRRRDTEQICAAHGLPWWDDPHNRDPAHRR 197 Query: 202 VRVR 205 VRVR Sbjct: 198 VRVR 201 >gi|289579227|ref|YP_003477854.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9] gi|289528940|gb|ADD03292.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9] Length = 464 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E A+ + ++V ++C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEARRDAQFVENICCKL 77 Query: 81 RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + K+ K M A R RY E K + I AH +D +ETV Sbjct: 78 KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G++G+ + +N I RP + R++I +L ++ + D +N Sbjct: 137 FLNLIR-----GAGMTGLIG--IKPVNGNIIRPLIEIERKEIEIYLKEKGLKPAIDFTNY 189 Query: 196 DDRFERVRVR 205 +D ++R +VR Sbjct: 190 EDLYKRNKVR 199 >gi|253582314|ref|ZP_04859537.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725] gi|251835853|gb|EES64391.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725] Length = 444 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 140/329 (42%), Gaps = 49/329 (14%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 +V I+V SGG DS+ L+ L + +F + + ++H LR D S Sbjct: 17 IVENDKIVVGFSGGPDSVFLVEMLMKLKKSINFDIV---LVHINHLLRGENSDGDEKFSL 73 Query: 75 --------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V SR +I +V+ K L A R+ARY L E + A I AH Sbjct: 74 EYGKKKGLQVFSR-KINITVLG---KKLGLTLEEAGRKARYDLFKEILRETGANKIALAH 129 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQLET R R G GL G+ + I+ +++I RP ++DI +L NI Sbjct: 130 NKDDQLETFMFRLTR-----GAGLEGL-EGIIAKRDMYI-RPISEIYKKDIIKYLNDNNI 182 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK--MKKFQD--------LRVKVNNAVAM 236 S+ D +N ++ F R +R +DL K KF+D +R +VN + + Sbjct: 183 SYRIDETNFENEFTRNSIR-----LDLIPFIEKRYNPKFKDKLYSLIEEIR-EVNRVLEI 236 Query: 237 LIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 KY+ + SI + Q D + L+ YL + +I L + L Sbjct: 237 KFEKYMVNNKLSIEKLKQLDKYLLSKVLIQYLYSYGIEVSRNKIQL--------IEDILH 288 Query: 296 SGKRGCVSIGR-VVIDRRANFLWITRAVR 323 G +S+ R ++ + +FL + + ++ Sbjct: 289 KGGSKDISLNREFILKKDYDFLTVEKNIK 317 >gi|240115610|ref|ZP_04729672.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] gi|260440579|ref|ZP_05794395.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] Length = 411 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 1 MALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 58 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 171 Query: 204 VRR 206 R Sbjct: 172 FRH 174 >gi|157736476|ref|YP_001489159.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018] gi|157698330|gb|ABV66490.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018] Length = 326 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + + L+A S G DS L L I F V++ +R +KDEV Y Sbjct: 6 SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ S+ + K + + AR+ RY E + +++TAH +D+LE Sbjct: 59 ELASKYNKQIYIKDIK-LESTSNFEKMARDIRYKFFEEIIDENSYEVLITAHQLNDKLEW 117 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M+ KG GL + + N + +P L ++++ +FL Q NI + D Sbjct: 118 FLMQ-----FTKGAGLVELIGFNEFEQKENYKVYKPLLEITKKELENFLKQENIKYFIDN 172 Query: 193 SNTDDRFERVRVRRFVRD 210 SN D++++R R D Sbjct: 173 SNFDEKYKRNYFRHNFSD 190 >gi|148381467|ref|YP_001256008.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 3502] gi|153932046|ref|YP_001385842.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 19397] gi|153936096|ref|YP_001389249.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall] gi|148290951|emb|CAL85087.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152928090|gb|ABS33590.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 19397] gi|152932010|gb|ABS37509.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall] gi|322807852|emb|CBZ05427.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum H04402 065] Length = 468 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R R+R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|323436099|ref|ZP_01050432.2| PP-loop family protein [Dokdonia donghaensis MED134] gi|321496414|gb|EAQ38831.2| PP-loop family protein [Dokdonia donghaensis MED134] Length = 404 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%) Query: 55 AISVDHC---LRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREAR 106 I V HC LR D + +V C I + S+ S +T AARE R Sbjct: 13 TIRVAHCNFNLRGVESDGDQAFVESYCKLHNIPIYIKSFDTSAYAKIEKTSTQIAARELR 72 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 Y E + T I+TAH +D+LET + R G G+ G+ T + ++N + Sbjct: 73 YQWFKELSATEGLDYILTAHHLNDELETFLINLGR-----GTGVKGL--TGIPEINERVV 125 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 RP L R+ I+ + LQ ++W ED SN D + R +R Sbjct: 126 RPLLPFSRKRIKEYALQEKLAWREDSSNATDNYVRNHLRH 165 >gi|294507733|ref|YP_003571791.1| cell cycle protein MesJ [Salinibacter ruber M8] gi|294344061|emb|CBH24839.1| cell cycle protein MesJ [Salinibacter ruber M8] Length = 468 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L L + +D A+ V++ LR A + V C Sbjct: 24 VLVAASGGVDSMTCLSVLRRLDAD-------VHALHVNYGLRAGADGDEALVRRWCQEQS 76 Query: 82 --IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + SVV+ + + L AAAR RY ++ A I A ++ T H DDQ ET+ Sbjct: 77 PAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEIGAPVVATGHHRDDQAETL 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R +G+ + D ++ + RP L RR+ I ++ + W DP+N Sbjct: 137 LLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAIEAYAESMGLPWRTDPTNQ 196 Query: 196 DDRFERVRVR 205 ++R +R Sbjct: 197 RHDYDRGVIR 206 >gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 321 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 13/189 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+++VSGG DSM +L H I F A++ +H LR+ + E V ++ + Sbjct: 23 IILSVSGGMDSMCML---HLFWRLAKKMDIVFLAVNFNHNLRKESVKEAETVKNLSAEFG 79 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V + K + A R RY + +K I TAH +D ETV M Sbjct: 80 IDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAHNANDNAETVLM 139 Query: 138 RSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G G +G+ + N+ + RP L +R+ I ++ + +C D SN Sbjct: 140 RLLR-----GSGNFAGIPQKRKINRNIVVIRPLLPVKRKFIEEYVRNHKLPFCTDKSNFS 194 Query: 197 DRFERVRVR 205 D + R ++R Sbjct: 195 DIYTRNKIR 203 >gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6] gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6] Length = 439 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L S+ + + SA+ + H L+ A + VC L + Sbjct: 24 VAFSGGLDSTVLLHLLASLAKTETLPPL--SAVHIHHGLQAAADAWPGHCQSVCDGLGVP 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ +P AAR+ARY +E T +++T DDQ ET+ R R Sbjct: 82 LRVMR-VQVQPGASPERAARDARYQAFTE--VTGAGEVLLTGQHRDDQAETLLFRLLR-- 136 Query: 144 AEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G G+ G+ + + RP L R + ++ + W EDPSN D RF R Sbjct: 137 ---GAGVRGLAAMPAHRRLAGGHLVRPLLDVSRVALENYADAHQLQWIEDPSNADPRFSR 193 Query: 202 VRVRRFV 208 +R V Sbjct: 194 NYLRHRV 200 >gi|146308057|ref|YP_001188522.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp] gi|145576258|gb|ABP85790.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp] Length = 440 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 18/190 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L + SAI V H L+ A + + VC+RL I Sbjct: 23 IAFSGGLDSSVLLHLLADWAQHEELPPL--SAIHVHHGLQPAADAWPEHCALVCARLDIP 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V ++ G R + + +++ A DDQ ET+ R R Sbjct: 81 LDIV---RAQVAPGASLEQAARRARYAAFAERLGPGEILLGAQHRDDQAETLLFRLLRGA 137 Query: 144 AEKGMGL-----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +G+ S C T+L RP L C R ++ ++ ++W EDPSN D+R Sbjct: 138 GVRGLAAMPVSRSLGCGTLL--------RPLLGCSRAELHAYAQCHGLAWVEDPSNADER 189 Query: 199 FERVRVRRFV 208 F R +RR V Sbjct: 190 FSRNFLRRQV 199 >gi|313889103|ref|ZP_07822759.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844843|gb|EFR32248.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 444 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 21/188 (11%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--LR 81 + VSGG+DSM L + D I ++H +RETAK + +V C ++ Sbjct: 23 LGVSGGADSMYLFYNFMDLKDDWDLDII---VCHLNHGIRETAKRDEEFVKKSCQAYGIK 79 Query: 82 IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V+ +N K + A R RY E++K I+TAH +D+ ETV Sbjct: 80 FISKTVNMDEFARNEKISS--EEAGRILRYEFFRENSK---GRKILTAHNANDRAETVLF 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL G+ + + +N + RP + +RE+I +L + + + +D +N ++ Sbjct: 135 NIMR-----GTGLKGL--SGISHVNKDVYRPLINIKREEIEDYLHKNKLQYYDDETNFEE 187 Query: 198 RFERVRVR 205 + R ++R Sbjct: 188 IYTRNKIR 195 >gi|262381387|ref|ZP_06074525.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296564|gb|EEY84494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 438 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 I ++R ++ R L +LV +SGG+DS+ LL L ++ + I++ HC Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 LR E+ +DE + + L +I +S+ K + AARE RYA E Sbjct: 52 FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + + AH DD +ETV M R G G+ GM + N +I RP L Sbjct: 110 MRERLGGQATAVAHHRDDSVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 REDI ++L + ++ D +N D F R+ V + +I+ A + + L Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273 + A I Y+ R + +S D L+I + T+L+ LL+ VS Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332 I PG LF S R++ DR ++LWIT + T +L P Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITPLEKKEERTFVLDP 320 Query: 333 EE 334 E+ Sbjct: 321 EK 322 >gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136] gi|189431712|gb|EDV00697.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136] Length = 426 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 ILVA+SGG+DS+ LL L +L ++ ++ HC LR E+ +DE +V ++ Sbjct: 22 ILVALSGGADSVALLRVL--LLEG-------YNCVAA-HCNFHLRGEESDRDE-EFVQNL 70 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L + V+ + S+ + + AARE RY + + A++I AH DD + Sbjct: 71 CRGLDVPLQVIHFDTNGYASRKRISIEMAARELRYEWFEQVRLQVGASVIAVAHHRDDSV 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + R G G++G+ + +N + RP L R+DI +FL + D Sbjct: 131 ETFLLNLVR-----GTGINGL--KGIAAVNGKVVRPLLDVSRDDILAFLADLKQDYVTDS 183 Query: 193 SNTDDRFERVRVR 205 +N +D + R ++R Sbjct: 184 TNLEDEYLRNKLR 196 >gi|13357633|ref|NP_077907.1| hypothetical protein UU077 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|61217428|sp|Q9PR68|TILS_UREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|11356774|pir||A82937 conserved hypothetical UU077 [imported] - Ureaplasma urealyticum gi|6899028|gb|AAF30482.1|AE002107_6 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 333 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L + V++ RE++ + + V D C + + Sbjct: 21 LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCRKNNL 71 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AR RY E K N + AH FDD LET YM Sbjct: 72 IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 131 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + I+ + RP L R++ ++ + + I + D +N Sbjct: 132 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223 D +ER RVR+ + L+ +Y KKF Sbjct: 186 LDIYERNRVRKIISSWSLNEVY-DFKKF 212 >gi|149197877|ref|ZP_01874926.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155] gi|149139098|gb|EDM27502.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155] Length = 417 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 26/192 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 LV SGG+DSM LL + S+ G++ + +H LR + +K + ++ + C Sbjct: 13 LVLFSGGADSMALLHLMQSL------GELDI-VLHFNHNLRGDDSKQDEQFCRNYCEDNG 65 Query: 82 IAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + VV+ K G AR R + +H N I AH DD E+ +MR Sbjct: 66 LELIVVNLDLDKERHANEGDEQLARRLRLQFLEDHYCGWN---IYLAHHLDDVKESFFMR 122 Query: 139 SQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G SG+C + L L L RP L RE +RS+L + N++W ED SN Sbjct: 123 AMR-----GANSSGLCALRRERKLGTLTLI--RPLLDYSREQLRSYLKENNLTWREDSSN 175 Query: 195 TD-DRFERVRVR 205 D D +R VR Sbjct: 176 QDADYCDRNYVR 187 >gi|307327055|ref|ZP_07606245.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113] gi|306887353|gb|EFN18349.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113] Length = 367 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG+DSM L AL + + R+ ++ ++VDH L++ + V+D L Sbjct: 59 VLAACSGGADSMALASAL-AFEAPRA--GLRAGGVTVDHGLQQGSDARAAEVADRMRALG 115 Query: 82 IAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +A +V + P+ A A H AT ++ HT DDQ ETV + Sbjct: 116 LAPVEAIAVSVGRGGGPEAAARDARYAALDGAAERH----GATAVLLGHTRDDQAETVLL 171 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS-------RPFLRCRREDIRSFLLQRNISWCE 190 R + LSGM W+S RPFL+ R +R L +++ + Sbjct: 172 GLARGSGTR--SLSGMA---------WVSGADGRYRRPFLQLDRHTVREACLAQSLPVWD 220 Query: 191 DPSNTDDRFERVRVR 205 DP N D + R RVR Sbjct: 221 DPHNVDPSYTRSRVR 235 >gi|261403929|ref|YP_003240170.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10] gi|261280392|gb|ACX62363.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10] Length = 476 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 9/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I+VAVSGG DS+ LL LH + R+ ++ V H R+ + E V ++ L Sbjct: 29 IVVAVSGGPDSVALLHVLHEISQHRT--PLRLICAHVHHGFRKESDQEAEMVRELAESLG 86 Query: 81 ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 A + + G AARE RY + + A+ NA + AH DDQ ETV+M Sbjct: 87 LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKHNARSVALAHHADDQAETVFM 146 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+G T + + + RPFLR + DI + D SN Sbjct: 147 RLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDHSNLQT 203 Query: 198 RFERVRVR 205 ++ R +R Sbjct: 204 KYRRNAIR 211 >gi|26553599|ref|NP_757533.1| cell cycle protein MesJ [Mycoplasma penetrans HF-2] gi|61216654|sp|Q8EWQ7|TILS_MYCPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|26453605|dbj|BAC43937.1| predicted cell cycle protein MesJ [Mycoplasma penetrans HF-2] Length = 295 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 116/301 (38%), Gaps = 45/301 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL ++ + V++ RE + ++ + V D C + + Sbjct: 6 LIAVSGGPDSMALLNKKRHLVE---------AVCHVNYHDREDSDNDEKIVRDYCKKYNL 56 Query: 83 AHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V K L RE RY + ++ + I+ AH +D LE+ YM Sbjct: 57 KLFVFDTHKDDVSKYKDINNLQTWYREIRYDFFEKISQELGIKKILIAHQKNDFLESAYM 116 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ +G+ +L + RP L ++ + + +NI + D +N D Sbjct: 117 SLNKNKKNLFLGIRRKSKF----RSLILIRPLLNKTKKSLEQYCRSKNIEFVIDYTNFWD 172 Query: 198 RFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 R+ R VR+ + + D YLK+K F N M K L + I Sbjct: 173 RYSRNVVRKMMAEWDKKTFQKFYLKVKWF--------NLKNMFFIKLLDSKFNNWIKQDF 224 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISL--------PGYRSMERVMLFLKSGKRGCVSIGR 306 DI Y L++ I L P +E+++ F+ K G V R Sbjct: 225 DIN--------YFLKIKNNYKESLIYLFLNHIGIKPNENKIEQIIEFINKNKNGSVKKYR 276 Query: 307 V 307 + Sbjct: 277 L 277 >gi|170761927|ref|YP_001752156.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508435|ref|ZP_02957979.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701596|ref|ZP_02971305.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168827504|gb|ACA32766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675843|gb|EDT87748.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700826|gb|EDU19108.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 330 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L AVSGG DSM +L + V++ RE++ + + V D C + + Sbjct: 18 LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCRKNNL 68 Query: 83 AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AR RY E K N + AH FDD LET YM Sbjct: 69 IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 128 Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ S + + I+ + RP L R++ ++ + + I + D +N Sbjct: 129 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 182 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223 D +ER RVR+ + L+ +Y KKF Sbjct: 183 LDIYERNRVRKIISSWSLNEVY-DFKKF 209 >gi|310829345|ref|YP_003961702.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612] gi|308741079|gb|ADO38739.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612] Length = 470 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 20/193 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 IL+ VSGG+DS+ LL L + ++ +A ++H +R A +E +V C Sbjct: 21 ILIGVSGGADSLALLYFLKKY---QGVLNVEIAAAHLNHEIRGKAAEEDHAFVKQFC--- 74 Query: 81 RIAHSVVSWKNS--------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I S++ + S K + L A REARYA E + + H DDQ Sbjct: 75 -IKQSILLYDKSVDVIQLAKKNKISLEEAGREARYAFFKELQSSEAYNKLALGHHLDDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R K G++GM + N I RP L ++ + S+ + + + D Sbjct: 134 ETVLMRLIRGTGVK--GVAGMLSETKGESN--IIRPLLCVDKKTVISYCKKNGLHYRTDN 189 Query: 193 SNTDDRFERVRVR 205 +N + R ++R Sbjct: 190 TNFETDVTRNKLR 202 >gi|311087577|gb|ADP67656.1| cell cycle protein MesJ [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 398 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 8/186 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS + L+ +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FYDEILLTGHHINDQCETFFLSLKR- 128 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFV 208 +R V Sbjct: 187 FIRNEV 192 >gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767] gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii] Length = 502 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 44/304 (14%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRET 65 E +R ++ +P I+VA+SGG DS+ L L R + ++ +AI++DH R Sbjct: 9 EVLRKCFKNGTFPERIVVALSGGVDSLCLTYLLGQF--KRIYKPSLQITAITIDHKYRAG 66 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHAKTINATL 121 + E V + + H V + + G + ARE RY + + + ++ Sbjct: 67 SGKEAEKVGVLVRPWGVKHIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKS 126 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGM-GL-------------SGMCDTILYDLNLWISR 167 ++ AH +DQ+ET R Q++ + G+ GL S D+I + R Sbjct: 127 LIVAHNLNDQIETFLQRLQQNSSIFGLVGLRTVDHLPISPTSPSENGDSI------HVVR 180 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDL 226 P L + +I + I W ED +N+D R +R V ++ H L QD+ Sbjct: 181 PLLSFDKSEIIETCTKNGIRWFEDHTNSDIHLTRRNLLRHIVSEVVPHRL-----DNQDI 235 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAI----SQDILNIDSTL----LFYLLRVSAAICGGQ 278 ++ NA++++ + L I+++ I NI++ L LF L + + ++ Sbjct: 236 PIEECNALSLVSKESLVKTHNEILSLVCEMQHQIANIENHLKLRGLFSLDKKNLSLT--- 292 Query: 279 ISLP 282 +SLP Sbjct: 293 VSLP 296 >gi|17545889|ref|NP_519291.1| cell cycle protein [Ralstonia solanacearum GMI1000] gi|61216686|sp|Q8Y074|TILS_RALSO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|17428184|emb|CAD14872.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 462 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 14/198 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSDVC 77 + VA+SGG DS LL A+ + D + ++ A+ + H L+ A R + V Sbjct: 26 VAVALSGGRDSAALLHAV-AAWRDAAGVPVRLVALHIHHGLQADADAWEAACARMAAAVG 84 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + R+ VS + G+ AAREARYA + ATL++TAH DDQ ETV + Sbjct: 85 AAFRVRRVRVSTDAGR---GIEEAAREARYAALDALCAETGATLLLTAHHLDDQAETVLL 141 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL G+ + + + + RP+L R DI ++ ++W EDPSN D Sbjct: 142 QLLR-----GAGLDGLSAMPMARERRVTLLRPWLDVPRGDIEAYARAHALAWVEDPSNGD 196 Query: 197 DRFERVRVRRFVRDIDLH 214 R+ R +R + + H Sbjct: 197 ARYARNALRPLLAGMAGH 214 >gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58] gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58] Length = 442 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA SGG DS LL L + RS SA+ V H L+ A + VC L Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIP 82 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R+ V+ S Q AAR+ARY A +++TA DDQ ET+ R Sbjct: 83 LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + RP L R ++ ++ + W EDPSN D RF Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192 Query: 200 ERVRVRRFV 208 R +RR + Sbjct: 193 SRNYLRREI 201 >gi|304405794|ref|ZP_07387452.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9] gi|304345037|gb|EFM10873.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9] Length = 480 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++AVSGG DSM LL +H + + ++K A VDH R + E V +L Sbjct: 24 IVIAVSGGPDSMMLLHLMHRIAT---ADRLKLVAAHVDHGFRGAESTAEGEQVRAFAEQL 80 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 IA V +TG+ A+R RY + + A A I AH DDQ ETV Sbjct: 81 GIAFEAVKLDMPTYIEETGMNGQLASRLRRYEFLHQVASRHGANRIALAHHADDQAETVL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R D N+ + RP LR + DI ++ Q I + D SN Sbjct: 141 MRMLRGAGAG---GLAGIQPKRLDKNVELIRPLLRMYKTDIFRYISQYEIPYAMDSSNEK 197 Query: 197 DRFERVRVR 205 + R +R Sbjct: 198 RDYFRNEIR 206 >gi|227873318|ref|ZP_03991580.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268] gi|227840833|gb|EEJ51201.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268] Length = 342 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 38/207 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD---------- 68 IL+A+SGG+DSM LL L + + SF A+ V H +R E +D Sbjct: 24 QILLALSGGADSMYLLYFLKELQNHLSFS---LRAMHVQHGIRGDEAVEDATFSRQQAEL 80 Query: 69 -EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLI 122 +V ++ CS V + + G+ AAR RY + E A++ T I Sbjct: 81 YQVPFLEYTCS--------VPDYAEENKLGIEEAARTLRYKALKEEALRWQAESGRKTKI 132 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIR 178 AH DDQ ET+ R G G SG+ + +L + + RP L R+E+I Sbjct: 133 ALAHHMDDQAETILFHLIR-----GAGFSGISGMKAEDLLSEAETTLLRPLLSLRKEEIL 187 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 L + I + ED +N D + R +R Sbjct: 188 KRLEELGIPYREDSTNRDKSYARNYLR 214 >gi|257459329|ref|ZP_05624442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter gracilis RM3268] gi|257443258|gb|EEV18388.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter gracilis RM3268] Length = 333 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 26/215 (12%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---R 71 +L+ L+A S G DS L L +KF VD+ +R +KDEV R Sbjct: 13 ALLRAGKNLLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEVASAR 65 Query: 72 YVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 Y++ ++ SV + N + + AR ARY +E + ++ AH FDD Sbjct: 66 YLAVKFNKQIYVKSVRLGASNFEHE------ARAARYDFFAEICRERGYENLILAHQFDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 + E M+ R G GLS GM + + I+RP L R+ ++ FL +RN+ Sbjct: 120 KFEWFLMQLGR-----GAGLSELLGM-QELEASEDYVIARPLLGVRKCELERFLRERNLK 173 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + D +N DRF+R +R + L+ + +KK Sbjct: 174 YFTDETNLTDRFKRGFIRAKFSEPFLNECFGGVKK 208 >gi|195977168|ref|YP_002122412.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867630|ref|YP_002743578.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus] gi|226695546|sp|B4U5H9|TILS_STREM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|259533766|sp|C0MC74|TILS_STRS7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|195973873|gb|ACG61399.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700906|emb|CAW97574.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus] Length = 427 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 18/191 (9%) Query: 18 YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + AH +L+AVSGG DSM LL LH+ ++ +I+ V+H R + DE Y+ Sbjct: 16 FDAHQAVLIAVSGGVDSMNLLHFLHAFQAEL---QIRIGIAHVNHKQRPESDDEEAYLRS 72 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V ++ + + AAR RY E + + + ++TAH DDQ ET+ Sbjct: 73 WAKKHAIPIYVAYFQGAFSEN----AARHFRYQFFEEIMQQEHYSALVTAHHADDQAETI 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R + L+G+ + + I RPFL +E++ N ED SN Sbjct: 129 LMRLIR--GSRLRHLAGIREVQPFATGQLI-RPFLTVSKEEL------PNPFHFEDHSND 179 Query: 196 DDRFERVRVRR 206 + R RVR Sbjct: 180 SMAYFRNRVRH 190 >gi|153939118|ref|YP_001392881.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. Langeland] gi|152935014|gb|ABS40512.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. Langeland] gi|295320858|gb|ADG01236.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. 230613] Length = 468 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYM 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R R+R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFVNLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|239998936|ref|ZP_04718860.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae 35/02] gi|240014155|ref|ZP_04721068.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI18] gi|240016590|ref|ZP_04723130.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA6140] gi|240080779|ref|ZP_04725322.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA19] gi|240112854|ref|ZP_04727344.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae MS11] gi|240117903|ref|ZP_04731965.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|240121717|ref|ZP_04734679.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID24-1] gi|240123462|ref|ZP_04736418.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID332] gi|240125707|ref|ZP_04738593.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|240128163|ref|ZP_04740824.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-93-1035] Length = 411 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 9/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 1 MALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 57 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 58 LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 171 Query: 204 VRR 206 R Sbjct: 172 FRH 174 >gi|291613873|ref|YP_003524030.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1] gi|291583985|gb|ADE11643.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1] Length = 445 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 10/184 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +HILV +SGG DS+ LL LH + + + SA+ V H + A + +D+C+R Sbjct: 25 SHILVGLSGGMDSVVLLHLLHILAPRFEW---RLSALHVHHGISPNADAWANFCADLCAR 81 Query: 80 LRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + + G+ AAAR+ R+A + + AH DDQ ET+ + Sbjct: 82 KGIPLHIERVDIAPLRDEHGIEAAARKLRHAAFARQP----CDYVALAHHADDQAETLLL 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R KG+ + I RP L R+++ + Q+ + W ED SN DD Sbjct: 138 QLLRGAGVKGVAAMPAVKSATPHARA-ILRPLLDVSRDELSEYAQQQGLRWVEDESNADD 196 Query: 198 RFER 201 + R Sbjct: 197 AYPR 200 >gi|281420131|ref|ZP_06251130.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205] gi|281405931|gb|EFB36611.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205] Length = 449 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 21/192 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 +VA+SGG+DS+ LL+ L ++ + SA + LR E+ +DE ++ ++C + Sbjct: 25 IVALSGGADSVALLLILKNI-------GLNISAAHCNFHLRGEESDRDE-QFCINLCQQQ 76 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I+ S + + + + AAR RY+ S+ K ++A I AH DD +ET+ Sbjct: 77 GISLSRIHFDTYAYAHLHKVSIEMAARNLRYSYFSQLVKDLHAGGICVAHHRDDNVETLL 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+ + N I RP L R+DI +L ++ + D +N + Sbjct: 137 LNLLR-----GSGVDGLAAIAPKNGN--ILRPLLCISRQDILQYLKEKKQDFVTDSTNLE 189 Query: 197 DRFERVRVRRFV 208 D R ++R V Sbjct: 190 DDALRNKIRHHV 201 >gi|309781266|ref|ZP_07676003.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp. 5_7_47FAA] gi|308920087|gb|EFP65747.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp. 5_7_47FAA] Length = 472 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 27/215 (12%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDE 69 F V P + +A+SGG DS L LH+ + R G +++ A+ + H L A Sbjct: 30 FVVSGDAEPPTVAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLHADA--- 83 Query: 70 VRYVSDV--CSRLRIAHSV-VSWKNSKPQT------GLMAAAREARYALISEHAKTINAT 120 DV C+ R+A +V V++ + G+ AAREARYA + A+ Sbjct: 84 -----DVWECACRRMAQAVGVTFHARRVNVAVDAGRGVEEAAREARYAALEALCTETGAS 138 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179 +++TAH DDQ ETV ++ R G GL G+ + + + RP++ R +I Sbjct: 139 ILLTAHHQDDQAETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIEL 193 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + + W EDPSNTD R+ R +R + + H Sbjct: 194 YAHAHALCWVEDPSNTDARYARNALRPLLAGMADH 228 >gi|184156933|ref|YP_001845272.1| ATPase [Acinetobacter baumannii ACICU] gi|332873990|ref|ZP_08441925.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059] gi|183208527|gb|ACC55925.1| predicted ATPase of the PP-loop superfamily [Acinetobacter baumannii ACICU] gi|332737731|gb|EGJ68623.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059] Length = 427 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 17 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 75 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q + + +DP N D ++RV R Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 164 >gi|291528871|emb|CBK94457.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale M104/1] Length = 247 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 19/215 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + RSF + F AI+VD + +++ V +C Sbjct: 26 IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLKPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLTIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR +++ +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230 >gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Coprococcus catus GD/7] Length = 476 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79 ++V VSGG+DS+ LL SVL + ++ +A+ + H LR A D R +V+ +C Sbjct: 26 VVVGVSGGADSVCLL----SVLKNLQMSMALQLTAVHIHHGLRGEAADRDRDFVTALCED 81 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++I + + + A R+ RY E + A+ I AH DD ETV Sbjct: 82 MQIPCVCFQADIRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHRDDLAETV 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL G+ + + I RP L R DI ++L ++ +S+ D +N Sbjct: 142 LLNLFR-----GSGLKGLSGIPM--MRGCIVRPLLGVGRADIEAYLGRQGMSYRNDATNF 194 Query: 196 DDRFERVRVR 205 + + R R+R Sbjct: 195 ETEYTRNRIR 204 >gi|258647528|ref|ZP_05734997.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259] gi|260852303|gb|EEX72172.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259] Length = 480 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 25/197 (12%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRY 72 V +LVAVSGG+DS+ LL LH + A V HC LR A D + + Sbjct: 28 VKDKRLLVAVSGGADSVALLRVLHQL----------GYACEVAHCNFHLRGEASDRDAAF 77 Query: 73 VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 VSD+C L + + + + AAR+ RY + N + + AH Sbjct: 78 VSDLCRDLGVPFHLRDFATEAFARSQAVSVEMAARDLRYQWFDQLLAERNLSAVAVAHHK 137 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET ++ + +G GL G+ + Y I RP L R +I ++L + Sbjct: 138 EDNVETFFL-----HLARGSGLHGLV-GMRYQRGKII-RPLLDVSRREIEAWLSAIGQPF 190 Query: 189 CEDPSNTDDRFERVRVR 205 D +N D RF+R R+R Sbjct: 191 VTDETNADVRFKRNRLR 207 >gi|126640676|ref|YP_001083660.1| cell cycle protein [Acinetobacter baumannii ATCC 17978] gi|126386560|gb|ABO11058.1| cell cycle protein [Acinetobacter baumannii ATCC 17978] Length = 427 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 17 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 75 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q + + +DP N D ++RV R Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 164 >gi|255038959|ref|YP_003089580.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053] gi|254951715|gb|ACT96415.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053] Length = 444 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 26/245 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDE--VRYVSD 75 L+AVSGG DS+ ++ H + + HC LR E+ DE VR ++ Sbjct: 22 LLAVSGGIDSVVMVHLFHE----------QGLPAGIAHCNFGLRGEESNADEAFVRALAA 71 Query: 76 VCS-RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C+ + ++ V + AARE RY E ++ I TAH +D LET Sbjct: 72 RCNFPVFVSDPDVKTFSKSHSISTQMAARELRYEWFEEIRRSSGYGWIATAHHSNDSLET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R G GL GMC + + + RP + R ++R + + I+W ED SN Sbjct: 132 LLLNLAR-----GTGLPGMCG--IAPVRDHLIRPLILSNRAEVRRYAEENGITWREDRSN 184 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D ++R +VR V + L L ++ + + A L+ +YL I+ S Sbjct: 185 ASDDYQRNKVRHHVVPV-LTDLNPSLETTFNASAERLRAANTLLDEYLGAWKSRIMRDSG 243 Query: 255 DILNI 259 +NI Sbjct: 244 GSMNI 248 >gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271] gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271] Length = 475 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 26/199 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-----VDHCLRETAKDEVRYVS 74 + ILVAVSGG DS IAL +L DR + + + S IS + H +R + E V Sbjct: 18 SRILVAVSGGPDS----IALWHIL-DR-YAREEKSDISLVISHIHHGVRRESDQEEEMVR 71 Query: 75 DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + SV +K K + AARE RYA E LI TAH D Sbjct: 72 KLAGKFETELSVHRFKAKDYADKSKKSFQEAAREWRYARFQEDKDKYQCHLIATAHHLGD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET+ R R G G SG+ +Y I RP L +++I ++ +S+ Sbjct: 132 QAETLLYRLLR-----GSGTSGLGG--IYPSAGEIIRPLLTVSKQEILAYCEAEGLSFAL 184 Query: 191 DPSNTDDRFERVRVRRFVR 209 D SN FE V VR +R Sbjct: 185 DQSN----FEPVYVRNKIR 199 >gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 442 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 11/194 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL + + + A + H L++ A D + + + + + Sbjct: 17 IAVALSGGLDSVVLLDTVCKAQTTYKDSPTEIWAFHIHHGLQKPADDWLIFCEKLAKKYK 76 Query: 82 IAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I ++ Q + A AR RY ++E ++ AH +DQ ETV ++ Sbjct: 77 IGFDFRLLHLAQDTDQGNVEARARAGRYEALAELCVEYGIGDLLLAHHQNDQAETVLLQL 136 Query: 140 QRDYAEKGMGLSGMCDT--ILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R GLSGM + +D + LW RP L R ++ + + W EDPSN Sbjct: 137 LRGAGV--AGLSGMPHERELTHDQSRITLW--RPLLNQSRAELEVYAKANKLKWIEDPSN 192 Query: 195 TDDRFERVRVRRFV 208 +F R +R+ + Sbjct: 193 QKTQFRRNAIRKQI 206 >gi|313681435|ref|YP_004059173.1| tRNA(ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994] gi|313154295|gb|ADR32973.1| tRNA(Ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994] Length = 338 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS L H +L + I F V++ RET+ E + + +R Sbjct: 15 VLLAFSGGVDSTALF---HLLLEN----NIAFDIAHVNYHTRETSDAEEKNAERLAAR-- 65 Query: 82 IAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 HS+ + +S G+ ARE RY K T ++TAH +D+LE + M+ Sbjct: 66 --HSLQCYAHSCRLGGINFEHRAREERYRFFGYLMKKHGYTYLLTAHQLNDRLEWLMMQI 123 Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL M +D + I RP L R+ I ++L +R I D SN D+ Sbjct: 124 CR-----GSGLPEMLGIRSHDSRDGIEILRPLLEWDRDSIEAYLHERKIPHHIDESNADE 178 Query: 198 RFER 201 R+ R Sbjct: 179 RYTR 182 >gi|306820236|ref|ZP_07453878.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551733|gb|EFM39682.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 472 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 23/193 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCS 78 ILVA+SGG+DS+ LL L + + + A +DH +R D VR Y D C Sbjct: 22 ILVALSGGADSLCLLDILIRLKDEYNLT---LYAAHLDHMIR--GVDAVRDALYCYDFCK 76 Query: 79 RLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + A VV+ K + G+ AR RY+++ E + +N I AH DDQ E Sbjct: 77 KNDVPFFLRAVDVVN-KAREEFRGVEETARTERYSMLFEIKQRLNIDKIAVAHNLDDQAE 135 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ M+ R +G+ G+ D I+ RP L +++I + + + D Sbjct: 136 TILMKLMRGSGLQGLRGMDYKRDDII--------RPLLDIYKKNINKYCEENCLEPRVDK 187 Query: 193 SNTDDRFERVRVR 205 +N +D++ R ++R Sbjct: 188 TNFEDKYTRNKIR 200 >gi|210629984|ref|ZP_03296207.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279] gi|210160735|gb|EEA91706.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279] Length = 353 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 34/210 (16%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETAKD-EVR 71 A +++ VSGG+DS LL+ + D + G+ + + V+H LR A D + Sbjct: 12 APVVLMVSGGADSTALLLMACTGALDIADGRGPARIARERLHVLHVNHHLRGEASDGDEA 71 Query: 72 YVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYA--------LISEHAKTINA 119 +V ++C+R L + H+ S+ + Q L AAAR+ RYA L ++ +A Sbjct: 72 FVRELCAREGLPLCVEHA--SFADLGGQN-LEAAARDVRYAAARRYVRELCAQTGAPRSA 128 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I+TAHT D+ ET +M A KG G +G+ +I N+ I RP L D+ Sbjct: 129 ARILTAHTASDRAETFFM-----NAIKGSGAAGL-SSIPRRRNI-IVRPLLDMTHADLIR 181 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 +L SW ED SN D + +R FVR Sbjct: 182 YLQVAGQSWREDESNQDTGY----LRNFVR 207 >gi|197294532|ref|YP_001799073.1| Cell cycle protein [Candidatus Phytoplasma australiense] gi|171853859|emb|CAM11821.1| Cell cycle protein [Candidatus Phytoplasma australiense] Length = 435 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM LL L S K K + +H R A + + C + +I Sbjct: 14 IIAVSGGVDSMVLLDFLWS-------QKYKLKVVHFNHLKRLNAIKDKNLIQSYCDQRKI 66 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + PQ AR R + + AK ++TAH DD ET+ + R Sbjct: 67 PFYYFELQ-LNPQ-NFQTEARLLRQEKLKQIAKKYQTPYVITAHHLDDLAETILQKISR- 123 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G SGM + ++ +++ +PFL + +I ++ + I++ D +N D ++R Sbjct: 124 -GSTLLGYSGMQPKLFFEEFIFL-KPFLYLAKAEIIAYAQKNKIAYLSDYTNQLDIYQRN 181 Query: 203 RVRRFV 208 ++R V Sbjct: 182 QIRNHV 187 >gi|221133298|ref|ZP_03559603.1| tRNA(Ile)-lysidine synthetase [Glaciecola sp. HTCC2999] Length = 426 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 24/200 (12%) Query: 22 ILVAVSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +A+SGG DS+ LL A + D + + + V+H L+ A ++ + +R Sbjct: 23 VYLALSGGMDSVVLLNAVMQQWPVDAPY---PLTLLHVNHHLQADAALWAKHCQSLANRY 79 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V+ + P + + AR ARY + +A + N L++ H DDQ+ET++++ + Sbjct: 80 NIPCHVLDVQLDSPNKNIESQARHARYTALF-NAMSHNGVLLVAQHA-DDQVETLFLQLK 137 Query: 141 RDYAEKGMGLSGMCDTILYDL---------NLWISRPFLRCRREDIRSFL---LQRNISW 188 R G GL+G+ + + ++ I RP L + I + L N W Sbjct: 138 R-----GAGLTGLSGMVPWQSGFQQFGAHPSMHIYRPLLGVTQAQINEYASVHLSPN-DW 191 Query: 189 CEDPSNTDDRFERVRVRRFV 208 +DPSNTD +F+R +R V Sbjct: 192 VDDPSNTDTKFDRNFLRNDV 211 >gi|110003919|emb|CAK98259.1| hypothetical protein mesj of the pp-loop superfamily [Spiroplasma citri] Length = 434 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 16/244 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL +++ D + F V++ R+ + + V + C + I Sbjct: 13 VIGVSGGPDSMFLLDNIYNSELDIN----NFIVCLVNYQKRKDSDYDEEIVVEYCQKRNI 68 Query: 83 AHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 V S + A ARE RY + ++ + ++ AH D +ET Sbjct: 69 KICVKKVTASDYEQYQVNSHNFQAVARELRYDFFLQISEKYHCQGVLIAHNLTDHIETYI 128 Query: 137 MRSQRD--YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ QR+ G+ + + L D L I R L+ RE+I +L + I++ D +N Sbjct: 129 LQKQRNGIVEYYGLNKTSYYYSQLLDKKLKIFRIMLKISREEIIEYLFHKQINYAIDSTN 188 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + R +R ++ I+L + L++++ R K N + ++ YL + I S Sbjct: 189 ILAIYNRNIIRNEIQHINLQDMLLEIEQ----RNKENEQLKLIAKNYLIENFGQINVTSF 244 Query: 255 DILN 258 + LN Sbjct: 245 NALN 248 >gi|227489338|ref|ZP_03919654.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090711|gb|EEI26023.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51867] Length = 270 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 28/190 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG DS+ L AL + + +A+ +DH L +D R VS+ +R+ Sbjct: 1 MAVGLSGGPDSLALTAALVAE-------GVHVTALCIDHGL----QDGSREVSEEAARIA 49 Query: 82 ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 A + V N P T +AAR+ARY +E + AHT DD ET + Sbjct: 50 RSWGAEARVIPINVDPPT--ESAARQARYRAFAEWGGPV-----CVAHTMDDLAETFLIA 102 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GM GM +T + I RP L RR D + + ++ DP N D Sbjct: 103 GLR-----GM-TCGMRETAEVE-GAQIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADPA 155 Query: 199 FERVRVRRFV 208 F RVRVRR V Sbjct: 156 FTRVRVRREV 165 >gi|153213784|ref|ZP_01948992.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587] gi|124115708|gb|EAY34528.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587] Length = 440 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS +L+AL + D FG +A+ V H L A ++ C + Sbjct: 20 LLLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQRCCREVG 76 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139 +A + + + + AREARY +++ H +NA TL++ DDQLET + Sbjct: 77 MACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQHADDQLETFLLAL 133 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG+ L RP L R+ I ++ Q ++W D SN D R+ Sbjct: 134 KRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVIDESNADIRY 190 Query: 200 ERVRVRRFV 208 ER +R V Sbjct: 191 ERNFLRHQV 199 >gi|322506829|gb|ADX02283.1| ATPase [Acinetobacter baumannii 1656-2] gi|323516698|gb|ADX91079.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii TCDC-AB0715] Length = 418 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + K L A AR+ARY Sbjct: 8 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + +++ AH DQ ETV +R G G+ G+ I Y ++ I RPF Sbjct: 66 QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 118 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q + + +DP N D ++RV R Sbjct: 119 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 155 >gi|83816193|ref|YP_445830.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855] gi|83757587|gb|ABC45700.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855] Length = 468 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L L + + A+ V++ LR A + V C Sbjct: 24 VLVAASGGVDSMTCLSVLRRL-------DVDVHALHVNYGLRAGADGDEALVRRWCHEQS 76 Query: 82 --IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + SVV+ + + L AAAR RY ++ A I A ++ T H DDQ ET+ Sbjct: 77 PAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEIGAPVVATGHHRDDQAETL 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R +G+ + D ++ + RP L RR+ I ++ + W DP+N Sbjct: 137 LLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAIEAYAESMGLPWRTDPTNQ 196 Query: 196 DDRFERVRVR 205 ++R +R Sbjct: 197 RHDYDRGVIR 206 >gi|161870026|ref|YP_001599195.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442] gi|161595579|gb|ABX73239.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442] Length = 436 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL L V + + G + A+ + H L A D + + C L + Sbjct: 26 VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R+DI + + + ED SN+D + R R Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|317153245|ref|YP_004121293.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316943496|gb|ADU62547.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 336 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS LL+ LH L+ ++ G++ A ++H LR A D+ R+ + +C L Sbjct: 43 LAVGLSGGADSTALLLCLH-WLAVKNGGRV--VAAHLNHRLRPEADDDARWAASLCESLG 99 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V+ + GL A REARY L ++ A I H DD E + + Sbjct: 100 VPCVAREADVAALAASRGMGLEEAGREARYTLFADVLAQHEAHFIALGHHLDDLGEDLLL 159 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A G LSGM + D + RP L + + L +SW ED +N+D Sbjct: 160 RLSRGTAWPG--LSGM---VGRDDGRRLLRPLLLTPKSTLTGLLTALGVSWREDATNSDP 214 Query: 198 RFERVRVRRFV 208 R+ R R+R V Sbjct: 215 RWARNRIRSTV 225 >gi|329117162|ref|ZP_08245879.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020] gi|326907567|gb|EGE54481.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020] Length = 427 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 34/193 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH ++ +I + V+H R + E Y+ Sbjct: 22 VLIAVSGGVDSMNLLHFLHV---NQKNLEINIAIAHVNHKQRLESDQEEAYLE------- 71 Query: 82 IAHSVVSW--KNSKP--QTGL-----MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 SW KN+ P QT + AR+ RYA + +T N + ++TAH DDQ+ Sbjct: 72 ------SWAKKNNIPFYQTAFSGHFSESKARDFRYAFFKKIMETENYSALVTAHHADDQV 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV+MR R + + C + + + RPFL + D+ +I ED Sbjct: 126 ETVFMRLLRGTRLRHLSSIKECQSF---GSGQLIRPFLTIAKADL------PDIFHFEDA 176 Query: 193 SNTDDRFERVRVR 205 SN + + R R+R Sbjct: 177 SNQTNDYLRNRIR 189 >gi|300859211|ref|YP_003784194.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41] gi|300686665|gb|ADK29587.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41] Length = 290 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 26/201 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V ++V +SGG DS+ L+ AL + K + A+ VDH L+ + Sbjct: 12 ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVAE-------KYQVLAVCVDHDLQPGSN 63 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +D RL +VV + L A AR ARY + + K + + HT Sbjct: 64 RVAEHAADTVRRLGAQATVVRVDVDR-NGSLEANARRARYEALRKFGKPV-----VVGHT 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD ET+ + + L G +L +W RPFL RR D + + Sbjct: 118 ADDHAETLLLGA----------LRGKAAGMLVQGTVW--RPFLTVRRADTVGACEELGLE 165 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 DP N F RV +R+ V Sbjct: 166 PWNDPHNNQKEFRRVAIRQQV 186 >gi|256840787|ref|ZP_05546295.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298376612|ref|ZP_06986567.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19] gi|256738059|gb|EEU51385.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298266490|gb|EFI08148.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19] Length = 438 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 I ++R ++ R L +LV +SGG+DS+ LL L ++ + I++ HC Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 LR E+ +DE + + L +I +S+ + + AARE RYA E Sbjct: 52 FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGER-HLSIEMAARELRYAWFEE 109 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + + AH DD +ETV M R G G+ GM + N +I RP L Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 REDI ++L + ++ D +N D F R+ V + +I+ A + + L Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273 + A I Y+ R + +S D L+I + T+L+ LL+ VS Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332 I PG LF S R++ DR ++LWIT + T +L P Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320 Query: 333 EE 334 E+ Sbjct: 321 EK 322 >gi|238924073|ref|YP_002937589.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] gi|238875748|gb|ACR75455.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] Length = 247 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 19/215 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + RSF + F AI+VD + ++ V +C Sbjct: 26 IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLSPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR ++L +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNLEIPGVKKRLFSAIQ 230 >gi|150008036|ref|YP_001302779.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503] gi|226695544|sp|A6LBU3|TILS_PARD8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|149936460|gb|ABR43157.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503] Length = 438 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 96/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 I ++R ++ R L +LV +SGG+DS+ LL L ++ + I++ HC Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 LR E+ +DE + + L +I +S+ + + AARE RYA E Sbjct: 52 FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGER-HLSIEMAARELRYAWFEE 109 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + + AH DD +ETV M R G G+ GM + N +I RP L Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 REDI ++L + ++ D +N D F R+ V + +I+ A + + L Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273 + A I Y+ R + +S D L+I + T+L+ LL+ VS Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332 I PG LF S R++ DR ++LWIT + T +L P Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320 Query: 333 EE 334 E+ Sbjct: 321 EK 322 >gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] gi|126237526|gb|ABO00927.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] Length = 320 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 86/203 (42%), Gaps = 20/203 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E RF R L VA+SGG+DS+ AL +V +D + +A+ VDH L+ + Sbjct: 13 EVARFARRHLAGTQRWCVALSGGADSL----ALTAVAAD----ILPTTALIVDHGLQPDS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTA 125 RL + V + G AAAR ARY AL + H ++ Sbjct: 65 AAVAETARAEALRLGCPDAHVLRVDVGTSGGPEAAARTARYGALRAAH----GGAPVLLG 120 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + + +CD Y RP L RR + + Sbjct: 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELG 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + DP N+D R+ R R+R V Sbjct: 174 LHPWVDPHNSDPRYTRSRLRTEV 196 >gi|160897951|ref|YP_001563533.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1] gi|160363535|gb|ABX35148.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1] Length = 319 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 30/201 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG+DS LL+A ++R G++ AI V H L+ A V VC++ Sbjct: 14 LAVAFSGGADSTALLLAC----AERWPGQV--VAIHVHHGLQSAADAFVGQCEKVCAQHA 67 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA-------------TLIMTAH 126 + + V +++ P AAR+ RYA + E A+ ++ + H Sbjct: 68 VPLKIRRVDARHA-PGQSPEDAARQLRYATLIEAAREPWPVQGASGDPLPPVRSMALAQH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQ+ET+ + R G G++G+ +L RP L + +R +L R Sbjct: 127 A-DDQVETLLLALSR-----GAGVAGLAAMPAQWSRADLEWHRPLLDLPGQALRDWLAAR 180 Query: 185 NISWCEDPSNTDDRFERVRVR 205 +W EDP+N D R+ R R+R Sbjct: 181 GQAWVEDPTNADARYTRNRIR 201 >gi|262276510|ref|ZP_06054319.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886] gi|262220318|gb|EEY71634.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886] Length = 440 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 7/188 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I++A SGG DS +L L + + ++ I + H L A + + + Sbjct: 17 PRQIVLAFSGGVDSRVMLDLLATYRDIHP--QHRYLVIHIHHGLSPNADEWMMRCEAWAT 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 A + ++ + L AAREARY I H + N L++T DDQ ET + Sbjct: 75 EADFAFKGIRVSLNQREGNLENAAREARYQAILNHVE--NDALVLTGQHADDQAETFLLA 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R G+ + + + + + RP L R I + + +SW ED SN D R Sbjct: 133 LKRGSGPAGLAAMPVTRPLGHAV---LCRPLLSITRAVIERYAEDQGLSWLEDESNLDCR 189 Query: 199 FERVRVRR 206 F+R +R+ Sbjct: 190 FDRNFIRQ 197 >gi|77164367|ref|YP_342892.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707] gi|254434774|ref|ZP_05048282.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27] gi|76882681|gb|ABA57362.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707] gi|207091107|gb|EDZ68378.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27] Length = 442 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 10/184 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL +L LS + G + SAI +DH L +++ + + C+ L + Sbjct: 23 VAYSGGLDSQVLLYSLVQ-LSPKLPGSL-ISAIHIDHGLHPRSEEWSLHCRESCAALGVG 80 Query: 84 HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V N+ P+ G AAAREARY + + ++TA DDQ+ET+ ++ R Sbjct: 81 YEEVK-VNAHPRKGESPEAAAREARYGALRR--RIALGECLLTAQHQDDQVETLLLQLLR 137 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ L RP L R +++ + Q + W EDPSN D F+R Sbjct: 138 GGGPAGLAAMAKAAPFGQGRLL---RPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDR 194 Query: 202 VRVR 205 +R Sbjct: 195 NYLR 198 >gi|261377822|ref|ZP_05982395.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685] gi|269146124|gb|EEZ72542.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685] Length = 457 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 9/180 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ + LH ++ G A+ + H L A + + C L Sbjct: 45 IAVALSGGLDSV---VLLHLLVCAGKKGGFIPEALHIHHGLSPHADSWADFCRNYCDTLG 101 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V K G+ AAAR+ RYA+ SE I + AH DDQ+ET + R Sbjct: 102 VRLETVRVSVEKNGLGIEAAARQKRYAVFSEKEFDI----LALAHHRDDQIETFMLAVAR 157 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LS M I RP L R++++ + + +S ED SNTD + R Sbjct: 158 GGGLR--ALSSMPSVRPLGTRGIIWRPLLPFSRQELQDYAERHGLSNIEDESNTDTGYLR 215 >gi|329939449|ref|ZP_08288785.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045] gi|329301678|gb|EGG45572.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045] Length = 392 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 85/191 (44%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ ++VDH L + D+ +V RLR Sbjct: 93 VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHGL-QAGSDQ--RAEEVAERLR 146 Query: 82 I--AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 H V S ++ P+ A A A H AT ++ HT DDQ ET Sbjct: 147 ALGLHPVESIAVSVGRDGGPEAAARDARYAALDAAADRH----GATAVLLGHTRDDQAET 202 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM + RPFLR R+ R+ + +++ +DP N Sbjct: 203 VLLGLARGSGIR--SLSGMA--AVSGAAGRYRRPFLRLDRQTARTACMAQSLPVWDDPHN 258 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 259 ADPAYTRSRLR 269 >gi|224539103|ref|ZP_03679642.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus DSM 14838] gi|224519267|gb|EEF88372.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus DSM 14838] Length = 436 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 31/209 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L 62 I+ + F R ILV +SGG+DS+ LL L ++ HC L Sbjct: 10 IDQEKLFTRE----DKILVTLSGGADSVALLRLLLAM----------GYTCEAAHCNFHL 55 Query: 63 R--ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 R E+ +DE+ +V ++C +L + H + + K + AARE RYA + Sbjct: 56 RGDESVRDEM-FVRELCLQLEVPLHVQHFQTTEEAEKRHISIEMAARELRYAWFEQLRLQ 114 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A +I AH DD +ET+ + R G G++G+ + N I RP L R++ Sbjct: 115 QGANVIAVAHHKDDSVETLLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLDRKE 167 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 I +L + S+ D +N D + R ++R Sbjct: 168 ITEYLQEIGQSYVTDSTNLQDEYTRNKIR 196 >gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces sp. AA4] gi|302439687|gb|EFL11503.1| predicted protein [Streptomyces sp. AA4] Length = 348 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 11/198 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR F+ ++ P + VAVSGG+DS+ L A VL R ++ A+ VDH L+ + Sbjct: 35 AVRDFLATVAVPGEVCVAVSGGADSLALAEATAYVLRHRD---VRTRALVVDHGLQADSA 91 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V L + V + + G AAAR ARY + E A L++ HT Sbjct: 92 AVASEAATVVKGLGVDAVEVHAVHVVGKGGPEAAARAARYHALRE-ALPNGEGLVLLGHT 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R G G + +D W RP L R + + + Sbjct: 151 QDDQAETVLLGLGR-----GSGPRSLAGMRPHD-PPW-GRPLLGITRAQTVAACTELGLE 203 Query: 188 WCEDPSNTDDRFERVRVR 205 +DP N D RF RVR+R Sbjct: 204 PWQDPHNADPRFTRVRLR 221 >gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL YB-4239] gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL YB-4239] Length = 523 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 17/207 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + + +SGG DSM L L + ++K AI++DH R +K E + ++ + Sbjct: 23 PTKVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLKIHAITIDHSFRAGSKVEAQKLTPTMN 82 Query: 79 RLRIAHSVVS--WKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I HS+ S + ++ P+ T AR R+ +++ + H DDQ+ET Sbjct: 83 NWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPFLFLGHHKDDQVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTI----------LYDLNLWISRPFLRCRREDIRSFLLQR 184 R Q + + G+ + + D +++ RP L ++DI Sbjct: 143 FVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLETKDGQVFLVRPLLDFYKDDIVKTCELH 202 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI 211 NI + DP+N + + R R F+R + Sbjct: 203 NIPYVIDPTNKNPKLTR---RNFLRQV 226 >gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] gi|256587394|gb|ACU98527.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] Length = 324 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 17/208 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +FLS E V + + + VAVSGG+DS+ L A V R + A+ VDH Sbjct: 10 LFLSEPE-----VSAWLGSGQVFVAVSGGADSLALAEAAAHVGRRRG---LTVGALVVDH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L+ + + + + RL + + V G AAAR ARYA + EHA + Sbjct: 62 GLQAGSAEVAEWAAQTALRLGVDTAKVLPVTVSGGGGPEAAARRARYAALREHAG--DDA 119 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 L++ HT DDQ ETV + R + L+GM L+ RP L R + Sbjct: 120 LVLFGHTRDDQAETVLLGLGRGSGPRS--LAGM-----RPLDPPWGRPLLDVPRSVTAAA 172 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +S DP NTD RF RVRVR V Sbjct: 173 CEELGVSPWHDPHNTDPRFRRVRVRHEV 200 >gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J1-194] gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL J1-175] gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J1-194] Length = 648 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A + V C Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANGQNVVEAFCESQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR RY + + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R A +G SG+ I RPFL + +I + + +++ D SNT Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197 Query: 198 RFERVRVR 205 + R R R Sbjct: 198 EYTRNRYR 205 >gi|325955276|ref|YP_004238936.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922] gi|323437894|gb|ADX68358.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922] Length = 431 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 38/229 (16%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSD 75 A L+ +SGG DSM L F ++ ++ SV HC LR D + + V D Sbjct: 19 AKFLLTISGGVDSMVLF---------HIFRQLSYT-FSVAHCNFQLRGNDSDLDEKLVVD 68 Query: 76 VCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C++ +I V + + Q+ + A R RY ++ T ++ AH +DQ Sbjct: 69 TCTKNKIPFFVEKFDVKEYQSTGNYSIEMACRNLRYEWFNKLLITHKFDYLVMAHHLNDQ 128 Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ + R KG M + + + I RP L +++I + +Q I W E Sbjct: 129 LETLLINLSRGSGSKGLMAMEEISNKIF--------RPLLTFSKKEIVDYAMQEKIIWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAML 237 D +N ++ F R ++R + + ++H +LK VN ++A+L Sbjct: 181 DLTNQENDFIRNQIRNQITPLLEEIHPQFLK---------NVNKSLAIL 220 >gi|171058356|ref|YP_001790705.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6] gi|170775801|gb|ACB33940.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6] Length = 457 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 15/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA SGG DS LL A + + R + A+ V H L A D + + C L Sbjct: 15 IAVAYSGGRDSSALLHATVACAAAR----VDVHALHVQHGLSAFAPDWLAHCERRCRALS 70 Query: 82 IAHSVVSWKNSK-----PQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + W +++ P G + A AR RY ++ A+ ++ AH DDQ+ET Sbjct: 71 LQGARL-WLHTRSLALQPARGESIEALARRERYRALASMAREAGCDTVLLAHHRDDQVET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ R GLS M +I + L +RP+L R I+S++ + + ED SN Sbjct: 130 FLLQALR--GAGAAGLSAM-PSIAWREGLTWARPWLDRPRSAIQSYVDAHALEFVEDDSN 186 Query: 195 TDDRFERVRVR 205 R R R+R Sbjct: 187 ASPRHARNRLR 197 >gi|225849409|ref|YP_002729573.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643627|gb|ACN98677.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1] Length = 454 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 17/197 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRY 72 SL+ P IL+A SGG DS+ L L +++ KI K S ++H LRE + + + Sbjct: 14 SLIQPKDKILIAFSGGPDSVVLSFLLKKF---QAYFKIEKISLAHLNHSLREESDKDEEF 70 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 D + I V V K + + A RE RY E + N + TAH Sbjct: 71 CKDFGQKYDIPVFVKKVDVKSVAKKEKKSIEEAGREERYKFFKEIMEKENFNKLATAHHL 130 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D +ET+++ + + G + I+ RP ++E++ + + ++S+ Sbjct: 131 SDLIETMFLWFVQGNKKGLKGFKPNEENII--------RPLYYIKKEELLEYCHKNDLSY 182 Query: 189 CEDPSNTDDRFERVRVR 205 D SN D R+ R +VR Sbjct: 183 VIDKSNFDKRYLRNKVR 199 >gi|222152214|ref|YP_002561389.1| PP-loop family protein [Streptococcus uberis 0140J] gi|222113025|emb|CAR40337.1| PP-loop family protein [Streptococcus uberis 0140J] Length = 427 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 17/192 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH + F +I + V+H R+ ++ E Y+ + + Sbjct: 23 VLIAVSGGVDSMNLLHFLH--IYQEKF-EILIGIVHVNHKQRQESEIEESYLIEWAKKHN 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I S+K + A AR RY + + T ++TAH DDQ ET+ MR R Sbjct: 80 IPIYTSSFKGKFTE----AKARTFRYDFFKKIMQEEGYTALVTAHHADDQAETILMRIFR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSG+ + + I RPFL ++ NI ED SN ++ + R Sbjct: 136 --GSRLKYLSGIKEIQSFGTGELI-RPFLGIQKSQF------PNIFHFEDQSNFENYYFR 186 Query: 202 VRVR-RFVRDID 212 R+R ++++I+ Sbjct: 187 NRIRNHYMKEIE 198 >gi|304440185|ref|ZP_07400075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371234|gb|EFM24850.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Peptoniphilus duerdenii ATCC BAA-1640] Length = 434 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 29/197 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 ILV +SGG+DS+ LL AL + D + + S ++H +RETA + +V ++C + Sbjct: 21 ILVGLSGGADSVYLLRALLYIKDDYN---LYISCAHINHGIRETALRDEDFVKNLCDKFD 77 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H ++ +K + A R+ARY N I AH DD ETV Sbjct: 78 VPLYINHINMNELAAKYKITSEEAGRKARYDFFDSIE---NIDKIALAHNLDDNAETVLF 134 Query: 138 RSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 R R G GL G+ D I+ RP L R I + L + D Sbjct: 135 RIIR-----GTGLQGLTGIPISRDKII--------RPILNTNRLTIENELKSMGQEYMID 181 Query: 192 PSNTDDRFERVRVRRFV 208 +N + + R ++R + Sbjct: 182 ETNLSNDYTRNKIRNLL 198 >gi|289208652|ref|YP_003460718.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix] gi|288944283|gb|ADC71982.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix] Length = 418 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 20/243 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +VR F++ + VA SGG DS + LH++ R G A V+H LR Sbjct: 9 MAAVRAFLQDHPGATSLRVAFSGGRDSS---VLLHALAQLRPQG---LEAWHVNHGLRPD 62 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATL 121 A+ + + V L + +V +N G AAAR ARY + E + L Sbjct: 63 AEAQAAFCVRVAEALEVPLTV---RNVIVLDDASEGPEAAARRARYTALREGLGERD--L 117 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TA DDQ ET + + R +G L GM + + + W+ RP L E I + Sbjct: 118 ILTAQHADDQAETFLLAALRGSGPEG--LQGM-RVLRREGDTWLGRPLLAVPGESIAGYA 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR--FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + W DPSN D RF+R +RR F R + +Y + + + + + +A L Sbjct: 175 RVAALDWYHDPSNDDTRFDRNFLRREIFPRLAERFPVYGSLARCARWQREAVDRLASLED 234 Query: 240 KYL 242 K+L Sbjct: 235 KHL 237 >gi|302206900|gb|ADL11242.1| tRNA(Ile)-lysidine synthase MesJ [Corynebacterium pseudotuberculosis C231] gi|302331467|gb|ADL21661.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis 1002] gi|308277154|gb|ADO27053.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis I19] Length = 280 Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 26/201 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V ++V +SGG DS+ L+ AL + K + A+ VDH L+ + Sbjct: 2 ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVAE-------KYQVLAVCVDHDLQPGSN 53 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +D RL +VV + + L A AR ARY + + K + + HT Sbjct: 54 RVAEHAADTVRRLGAQATVVRVDVDRNGS-LEANARRARYEALRKFGKPV-----VVGHT 107 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD ET+ + + L G +L +W RPFL RR D + + Sbjct: 108 ADDHAETLLLGA----------LRGKAAGMLVQGTVW--RPFLTVRRADTVGACEELGLE 155 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 DP N F RV +R+ V Sbjct: 156 PWNDPHNNQKEFRRVAIRQQV 176 >gi|256028355|ref|ZP_05442189.1| cell cycle protein MesJ [Fusobacterium sp. D11] gi|289766281|ref|ZP_06525659.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11] gi|289717836|gb|EFD81848.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11] Length = 448 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---VRYVSDV 76 I+V SGG DS+ L+ L + ++F K + ++H LR + DE Y Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGKDAVSDENFSFEYAKK- 78 Query: 77 CSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + L I + K + G L RE RY S+ K + A I TAH DDQ+ET Sbjct: 79 -NNLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSKIYKKVGANKIATAHNKDDQIET 137 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R G L G+ + + N I RP ++DI +L + I + D +N Sbjct: 138 FLFRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILDYLNKNEIQYKIDKTN 190 Query: 195 TDDRFERVRVR 205 ++ F R +R Sbjct: 191 FENEFTRNSIR 201 >gi|90413546|ref|ZP_01221537.1| hypothetical cell cycle protein MesJ [Photobacterium profundum 3TCK] gi|90325478|gb|EAS41961.1| hypothetical cell cycle protein MesJ [Photobacterium profundum 3TCK] Length = 439 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 15/238 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVCS 78 ++A+SGG DS LL + + D + + A+ V H L A ++ D Sbjct: 21 VIALSGGLDSRVLLHLMGRFIRDNP--QYQCDAVHVHHGLSNNADKWALQCQQWAFDEQI 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I H + N + + ARE RY +S+H + + ++TA DDQLET + Sbjct: 79 TCHIEHVTLVLGN---RISVEQQAREQRYLALSKHIQQDDC--LLTAQHADDQLETFLLA 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R GL+ M ++ + + + RP L+ R+ I + + + W ED SN D R Sbjct: 134 LKR--GSGPAGLASMPESTTFGIGYHL-RPLLQVIRQSITDYGITHQLEWVEDESNQDQR 190 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ++R +R + + LH + ++K + L+ + L H+ + + Q + Sbjct: 191 YDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLLKALHVDQSL 247 >gi|262341192|ref|YP_003284047.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272529|gb|ACY40437.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 456 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 35/212 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHC- 61 IE +R + I VAVSGG DSM LL+ L ++ + V HC Sbjct: 7 IEKIR---KYFSLKNKICVAVSGGLDSMVLVNLLLDLSNI------------ELEVAHCN 51 Query: 62 --LR--ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113 LR E+ +DEV ++ + C++ I V + + K + + AAR+ RY E Sbjct: 52 FTLRNQESDEDEV-FIKNFCTKKNIICHVKRFDTLNFSKKNKLSIQMAARKLRYDWFFEL 110 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 K I+ I+ H +D +ET ++ R G G+ G+ + N RP Sbjct: 111 LKKIDYDYIVLGHHLNDSIETFFLNILR-----GTGIKGLLG--IPKKNGKFIRPLSDFT 163 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 +E+I + +NI W D SN + ++ R ++R Sbjct: 164 KEEILHYAKIKNIKWRLDSSNLETKYLRNKIR 195 >gi|146310390|ref|YP_001175464.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638] gi|254789036|sp|A4W6T3|TILS_ENT38 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|145317266|gb|ABP59413.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638] Length = 426 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 10/187 (5%) Query: 17 VYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V+P +LV SGG DS LL L +L ++ AI V H L A V + Sbjct: 10 VFPYRQLLVGFSGGLDSTVLLHRL--MLWREQEPDVQIRAIHVHHGLSSNADHWVAHCES 67 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLET 134 +C I V K G A AR+ARY KT+ A ++TA DDQ ET Sbjct: 68 LCKSWHIPLIVERVKLRDEGLGTEAQARKARYLAFE---KTLQAGEALVTAQHLDDQCET 124 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G LS M + + I RP L R + + N+ W +D SN Sbjct: 125 FLLALKRGSGPAG--LSAMPVRTEFAGSQLI-RPLLGETRTSLEKWAQDYNLCWIDDESN 181 Query: 195 TDDRFER 201 DDR++R Sbjct: 182 QDDRYDR 188 >gi|54310067|ref|YP_131087.1| cell cycle protein MesJ [Photobacterium profundum SS9] gi|61216518|sp|Q6LN41|TILS_PHOPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46914506|emb|CAG21285.1| hypothetical cell cycle protein MesJ [Photobacterium profundum SS9] Length = 435 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 15/238 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYVSDVCS 78 ++A+SGG DS LL + + + + + A+ V H L + A+ +++ + Sbjct: 21 VIALSGGLDSRVLLHLMGRFIQENP--QYQCDAVHVHHGLSVNADKWAQQCLQWAFEEKI 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I H + N + + ARE RY +S+H + ++TA DDQLET + Sbjct: 79 TCHIEHVTLVLGN---RISVEQQAREQRYLALSKHVQ--QGDCLLTAQHADDQLETFLLA 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R GL+ M ++ + ++ + RP L+ R+ I + + + W ED SN D R Sbjct: 134 LKR--GSGPAGLASMPESTTFGISYHL-RPLLQVTRQSITDYGIAHQLEWVEDESNQDQR 190 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ++R +R + + LH + ++K + L+ + L H+ + + Q + Sbjct: 191 YDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLSKALHVDQSL 247 >gi|298488349|ref|ZP_07006381.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157171|gb|EFH98259.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 445 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 8/157 (5%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ A + VC L +A +V + P + AAR+ARY ++ Sbjct: 57 LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VHVDPGASIEQAARQARYTAFTD 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171 + +++T DDQ ET+ R R +G+ + G IL +L RP L Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPGQ--RILGRGHL--VRPLLA 169 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ + Q + W EDPSN D RF R +R V Sbjct: 170 VSRVELEGYAHQHGLHWVEDPSNDDSRFSRNFLRSDV 206 >gi|262374325|ref|ZP_06067601.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205] gi|262310883|gb|EEY91971.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205] Length = 463 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 17/189 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DSM LL + + ++ +I +DH L+ ++ + V + Sbjct: 31 TQFLIGCSGGMDSMLLLYLMSEIFPSQT------RSIYIDHQLQSSSTEWGCLVQKQSEQ 84 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I V K L AR ARY +H K+ +++ AH DQ ET+ +R Sbjct: 85 LNIP--CVIQKVHVDAGNLEQQARHARYQAYIKHLKS--HEILVLAHHQQDQAETLLLR- 139 Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G++G+ YD+ +L I RPFL R+ I + Q + DP+N D Sbjct: 140 ----LFSGAGVNGLSAMQAYDVRKDLTIWRPFLELSRQQIEEWAKQIGFDYVVDPTNHDT 195 Query: 198 RFERVRVRR 206 ++R R Sbjct: 196 HYDRAWCRE 204 >gi|257455699|ref|ZP_05620928.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60] gi|257446982|gb|EEV21996.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60] Length = 485 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 41/212 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DSM LL A + ++ I ++H L++ + D + V C + Sbjct: 31 IYIACSGGRDSMALLFACQQL-------QLPIHVIHINHKLQKISDDWQQLVEGYCHKHH 83 Query: 82 IAHSVV--SWKNSK-----------PQTGLMAA----AREARYALISEHAKTINATLIMT 124 I + V W++ + Q G AR ARY I + A NA ++ Sbjct: 84 IDYDSVCIDWQSQQVYGADSTISQEQQVGTQQVNEQQARTARYHAIMQIAGE-NA-IVAL 141 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIR 178 AH +DQ+ET+ + +G GL+G+ + + +W+ RP L R++I Sbjct: 142 AHHANDQVETLLIN-----VCQGTGLAGLTGMTAFGVQHEFGKPIWLWRPLLGVTRDEIS 196 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 F+ + I + +DP+N F R F+R+ Sbjct: 197 DFVAAQPIPYVDDPTN----FGVANQRAFLRN 224 >gi|313899743|ref|ZP_07833246.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2] gi|312955358|gb|EFR37023.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2] Length = 406 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 14/189 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL + F + +++ R+TA ++ V C+R I Sbjct: 13 IIGVSGGPDSMALL----DMCRKEGF---QLVVAHMNYKKRDTADRDMELVRSYCARFHI 65 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +KP G A ARE RY + E + A ++ AH DD LET M +R Sbjct: 66 PFE--ARLQTKPCVGNFQAFAREERYRMYRELLQKYQAAAVLLAHHLDDHLETYLMAKER 123 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 ++ +G+ + I RP + + ++ ++ + + + D SN D + R Sbjct: 124 GSMKEYLGIQEEACI----MGCTIIRPLMAYSKRELEAYCRENAVPFGIDESNLTDHYAR 179 Query: 202 VRVRRFVRD 210 R+R + D Sbjct: 180 NRIRHEIVD 188 >gi|319787808|ref|YP_004147283.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317466320|gb|ADV28052.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 443 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V SGG DS LL AL + + R+ G A+ V H L A D + + Sbjct: 18 LVVGFSGGLDSSALLHALAAEPAIRARG---LRAVHVHHGLHADAGDWAAHCLRQAAAWG 74 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRS 139 + V+ + + GL AAREARYA + T+ +++TAH DDQ ET +R+ Sbjct: 75 VPLQVIEVQVPADAGLGLEGAAREARYAAL---LSTLGPGEVLVTAHHLDDQAETFLLRA 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN----T 195 R +G+ G + W RP L R + ++W +DPSN Sbjct: 132 LRASGPEGL---GAMRPLRRFGGGWHWRPLLGLSRAVLEDHARAHGLAWVDDPSNALADA 188 Query: 196 DDRFERVRV 204 D F R+ V Sbjct: 189 DRNFLRLEV 197 >gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter xylanophilus DSM 9941] gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter xylanophilus DSM 9941] Length = 444 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 19/201 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 +E+VR + L P L VSGG DS+ LL AL + + + + VDH LR E Sbjct: 11 LETVRRYGMDLSRP---LALVSGGPDSVALLRALVGL-------GYEPAVLHVDHGLRGE 60 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ + +V ++C L + V S + + GL AR RY + E A + A+ + Sbjct: 61 ESRGDAEFVRELCRGLGLRCEVRSLRLEG-RAGLQERARRERYRIAGEVAGRLGASAVAV 119 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ET+ + R G GL G+ + + + RP + R +I +L Sbjct: 120 GHNADDVAETLLLNLAR-----GSGLRGLSG--IPPVRGRVCRPLIERTRAEILGYLEAL 172 Query: 185 NISWCEDPSNTDDRFERVRVR 205 + D +N ++ R RVR Sbjct: 173 GQGYRVDSTNLLPKYARNRVR 193 >gi|168180996|ref|ZP_02615660.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916] gi|182668056|gb|EDT80035.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916] Length = 468 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYKLNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R ++R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|223038944|ref|ZP_03609236.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter rectus RM3267] gi|222879917|gb|EEF15006.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter rectus RM3267] Length = 332 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 18/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L +KF VD+ +R +KDE+ + L+ Sbjct: 20 LLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEITSARQLA--LKF 70 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + AR ARY SE + ++ AH FDD+ E M+ R Sbjct: 71 NKQIYVKSVCLGASNFEHEARAARYEFFSEICREHGYENLILAHQFDDKFEWFLMQLGR- 129 Query: 143 YAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GLS GM + + + I+RP L R+ ++ FL +RN+ + D +N +RF Sbjct: 130 ----GAGLSELLGMQELEARE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLTERF 184 Query: 200 ERVRVR 205 +R +R Sbjct: 185 KRGFIR 190 >gi|189467232|ref|ZP_03016017.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM 17393] gi|189435496|gb|EDV04481.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM 17393] Length = 443 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 31/209 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L 62 I+ + F R ILV +SGG+DS+ LL +L D + HC L Sbjct: 10 IDQEKLFTRE----DKILVTLSGGADSVALL----RLLLDMGY------TCEAAHCNFHL 55 Query: 63 R--ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 R E+ +DE+ +V ++C +L + H + K + AARE RYA + Sbjct: 56 RGDESVRDEM-FVRELCLQLVVPLHVQHFQTMEEAEKRHISIEMAARELRYAWFEQLRLQ 114 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A +I AH DD +ET+ + R G G++G+ + N I RP L R++ Sbjct: 115 QGADVIAVAHHKDDSVETLLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLDRKE 167 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 I +L + S+ D +N D + R ++R Sbjct: 168 ITEYLQEIGQSYVTDSTNLQDEYTRNKIR 196 >gi|331007449|ref|ZP_08330624.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989] gi|330418742|gb|EGG93233.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989] Length = 483 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 13/197 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-----AISVDHCLRETAKDEVR 71 V+ +++A SGG DS + LH+V+ G I FS A+ V+H L + A + Sbjct: 34 VHVKRLVIAYSGGVDST---VLLHAVVEAAKQGLIPFSLSSIVAVHVNHQLSDQADCWQQ 90 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L IA + + G+ AAAR+ARY++ + + L+ H DQ Sbjct: 91 HCQQSAESLGIACFSEAVRVESTGKGVEAAARDARYSVFEGFLQPGDCLLL--GHHQGDQ 148 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV +R R KG+ + + L RP L + I+++ Q ++W ED Sbjct: 149 AETVLLRLFRGAGVKGLTAMPVSRAMGKASLL---RPLLAVNQAAIQAYARQHQLTWVED 205 Query: 192 PSNTDDRFERVRVRRFV 208 SN D ++R +R V Sbjct: 206 ESNQSDHYDRNFLRNKV 222 >gi|291524808|emb|CBK90395.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale DSM 17629] Length = 247 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 19/215 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + RSF + F AI+VD + ++ V +C Sbjct: 26 IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLEPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR +++ +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230 >gi|203284682|ref|YP_002222422.1| cell cycle protein [Borrelia duttonii Ly] gi|201084125|gb|ACH93716.1| cell cycle protein [Borrelia duttonii Ly] Length = 439 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 21/203 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68 F+ R+L+ ++VA SGG DS LL+ L L+ A H +R ++ Sbjct: 14 FYKRNLLTKEKVIVAFSGGPDSTVLLLNLKKYLN------NNIVAFYFAHYIRSKSEQDL 67 Query: 69 EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATLI 122 E+ +V C+ I + V K Q G+ AR+ RY + E NA+ + Sbjct: 68 EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENNASYV 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ ET+ MR +G L G + +N +I RP L RE+I FL Sbjct: 128 ALAHNKNDQFETLIMR-----FFQGSFLDGFVGIPV--INNFIIRPLLEVSREEIEKFLS 180 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 NI + D +N +D + R +VR Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVR 203 >gi|187928104|ref|YP_001898591.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J] gi|187724994|gb|ACD26159.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J] Length = 472 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 19/211 (9%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDE 69 F V + + +A+SGG DS L LH+ + R G +++ A+ + H L+ A Sbjct: 30 FVVSGEIETPTVAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLQADAD-- 84 Query: 70 VRYVSDVCSRLRIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 C R+ A H+ + G+ AAREARYA + A++++T Sbjct: 85 --VWECACQRMAQAAGVAFHARRVYVEIDAGQGVEEAAREARYAALEALCAQTGASILLT 142 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQ 183 AH DDQ ETV ++ R G GL G+ + + + RP++ R +I + Sbjct: 143 AHHQDDQAETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIELYAHA 197 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + W EDPSNTD R+ R +R + + H Sbjct: 198 HALCWVEDPSNTDARYARNALRPLLAGMADH 228 >gi|110834021|ref|YP_692880.1| cell cycle protein MesJ [Alcanivorax borkumensis SK2] gi|110647132|emb|CAL16608.1| cell cycle protein MesJ, putative [Alcanivorax borkumensis SK2] Length = 433 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + A+ +DH L+ ++ R+ + + IA ++ S + GL A AR+ARY ++ Sbjct: 45 RLCAVHIDHQLQADSRAWSRFCGALADKYDIALTIEPVTVSMAE-GLEAGARDARYQVLL 103 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ ATL++ AH +DQ ETV R R +G+ G + + LW RP L Sbjct: 104 PLARAKGATLVL-AHHRNDQAETVLFRLLRGAGVQGLSAMGQ-HSQQQGVTLW--RPLLG 159 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + + + +++W EDPSN D R +R + Sbjct: 160 LGQHVLEKWGAELSLNWLEDPSNQDQSLRRNYLRHTI 196 >gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] gi|255918768|gb|ACU34279.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] Length = 308 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 23/208 (11%) Query: 4 SPIESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 P+ VR VR + PA + VAVSGG+DS+ L ++ S A+ VDH Sbjct: 7 GPLSRVRTAVRRFLAEHRPARVAVAVSGGADSLALAACTAALTS-------GARAVVVDH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L+E + + + C+ L + V + + EA A Sbjct: 60 GLQEGSAEVAERAARTCAELGLDAQVRRVEVTG------GGGPEAAARRARYAALRPERG 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 L++ HT DDQ ETV + R + ++GM +L+ RP L R D Sbjct: 114 LVLLGHTLDDQAETVLLGLGRGSGPRS--IAGM-----RELDAPWGRPLLGVSRADTEGA 166 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +S DP N D F RVR+RR V Sbjct: 167 CAELGLSPWSDPHNADPAFTRVRLRREV 194 >gi|50955662|ref|YP_062950.1| hypothetical protein Lxx21520 [Leifsonia xyli subsp. xyli str. CTCB07] gi|61216490|sp|Q6ACP8|TILS_LEIXX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50952144|gb|AAT89845.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 332 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 10/187 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG+DS+ L A F + AI VDH L+ + + + L Sbjct: 34 VLIGLSGGADSLALAAAAAFEAPRAGF---RSGAIVVDHGLQPGSAEVAAGAACQARALG 90 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V + G AAR AR+ A+ A I+ AHT DDQ ETV + R Sbjct: 91 LGPVLVERVRVEAAGGPEGAARAARHTAFDSAARATAAARILLAHTLDDQAETVLLGLAR 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G G S + +L D + RPFL RR R+F + +DP N D + R Sbjct: 151 -----GSGPSSL-QGMLPDTGRLL-RPFLGLRRATTRAFCADSGLEPWDDPHNDDPAYTR 203 Query: 202 VRVRRFV 208 VRVR V Sbjct: 204 VRVRSAV 210 >gi|56460788|ref|YP_156069.1| PP family ATPase [Idiomarina loihiensis L2TR] gi|61216428|sp|Q5R0Q7|TILS_IDILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56179798|gb|AAV82520.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR] Length = 448 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 36/311 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F +ES+ +L ++ A+ GG+DS +L L + ++ AI +DH Sbjct: 9 LFCESLESL-----ALKPGQQLVAALGGGADSQTILDLLMRFRQQNP--QYQYLAIHLDH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHA 114 ++ D + + + + + SK AA RE+RY ++E Sbjct: 62 SFHPSSADWSSTIEHAAKSYGVKTVFEPLNVPIENRQSKE-----AAGRESRYRRMAELT 116 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +A L++ H +DQ+ET +++ +R KG LS M + + + RP L + Sbjct: 117 ED-DAVLLLGQHR-NDQIETFFLQLKRGSGPKG--LSSMAAIQPWVGSRRLCRPLLSVSK 172 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LR 227 EDI S+ Q+ ++W ED +N D R E R F+R + L + +F + L Sbjct: 173 EDILSYAQQQKLTWIEDDTNYDTRIE----RNFLRHKVVPLLEQRWPQFGNSVLRSAKLC 228 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRS 286 + + L+ + L + +L+ S + LLRV + G + SLP Y Sbjct: 229 AEQQQVMDELLQEKLYKAQKHKSHFPLSLLSEHSAAMQRALLRV--WLQGQEYSLPSYEQ 286 Query: 287 MERVMLFLKSG 297 +E++ L +S Sbjct: 287 LEQIRLQAQSA 297 >gi|189425578|ref|YP_001952755.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ] gi|189421837|gb|ACD96235.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ] Length = 476 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 20/207 (9%) Query: 6 IESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 ++++R F +L P L V VSGG+DS+ LL +L+ + ++HCLR Sbjct: 17 LDAIRRF--NLCRPGDCLIVGVSGGADSVALL----DLLATLPGFPLTLVVAHLNHCLRG 70 Query: 65 TAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 D + ++V + R ++ + +S + + L A R ARYA E +A Sbjct: 71 AESDGDQQFVQQLADRYQLPCELRCADISQLARQQRLSLEEAGRTARYAFFDELRTRHHA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIR 178 I AH DDQ ET+ + +G G +G+ + + LN I RP L R+++R Sbjct: 131 AAIAVAHHSDDQAETLLL-----RLLRGAGTTGL--SAMAPLNRDGIIRPLLGISRQELR 183 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 +L R + + ED SNTD + R RVR Sbjct: 184 EYLTARGLVFREDSSNTDQAYLRNRVR 210 >gi|315635636|ref|ZP_07890899.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Arcobacter butzleri JV22] gi|315479933|gb|EFU70603.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Arcobacter butzleri JV22] Length = 326 Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + + L+A S G DS L L I F V++ +R +KDEV Y Sbjct: 6 SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + K + + AR+ RY E + ++TAH +D+LE Sbjct: 59 KLALKYNKQIYIKDIK-LESTSNFEKTARDIRYKFFEEIIDENSYETLITAHQLNDKLEW 117 Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M+ KG GL + + N + +P L+ +E++ FL Q NI + D Sbjct: 118 FLMQ-----LTKGAGLVELIGFNEFEQKENYKVYKPLLKITKEELEKFLKQENIKYFIDN 172 Query: 193 SNTDDRFERVRVRRFVRD 210 SN D++++R R D Sbjct: 173 SNFDEKYKRNYFRHNFSD 190 >gi|168183607|ref|ZP_02618271.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf] gi|237796988|ref|YP_002864540.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657] gi|182673269|gb|EDT85230.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf] gi|229260540|gb|ACQ51573.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657] Length = 468 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKDQLRIKDIYVAHIN--HGVRGAESNADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDRYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R ++R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 SIIA----------------------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 II I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RIIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|113867244|ref|YP_725733.1| ATPase [Ralstonia eutropha H16] gi|113526020|emb|CAJ92365.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ralstonia eutropha H16] Length = 439 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL A + ++ G + A+ V H L+ A D R+ + +C++ ++ Sbjct: 1 MALSGGRDSVALLHAARAAAAEWGVGA-RVVALHVHHGLQADADDWDRFCAALCAQWQVG 59 Query: 84 HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + +P+ G + AAAR ARYA ++ A L++ AH DDQ+ETV +R R Sbjct: 60 YFVRR-VSVQPEVGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFR 118 Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 GM +GM D ++ RP+L R +I ++ + W +DPSN D+R+ Sbjct: 119 GAGVAGM--AGMPGLRPLDERSGVTLLRPWLDVARAEIEAYCAANALQWVDDPSNADERY 176 Query: 200 ERVRVR 205 R +R Sbjct: 177 ARNALR 182 >gi|15674260|ref|NP_268433.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS] gi|71909825|ref|YP_281375.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005] gi|94989520|ref|YP_597620.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10270] gi|94993407|ref|YP_601505.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10750] gi|61217414|sp|Q9A201|TILS_STRP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13621335|gb|AAK33155.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS] gi|71852607|gb|AAZ50630.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005] gi|94543028|gb|ABF33076.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10270] gi|94546915|gb|ABF36961.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10750] Length = 428 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|302380148|ref|ZP_07268620.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311931|gb|EFK93940.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3] Length = 451 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%) Query: 13 VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69 +R + H IL+ +SGG+DS+ LL L + D F + ++H R+TA +DE Sbjct: 12 IREKLIEKHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDE 68 Query: 70 --VRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 R +SD + ++ S NS L + R RY +E K+ + I Sbjct: 69 NFSRKISDENNIQFFSKKVDMKQYSIDNS---ISLEDSGRILRYKCFNEILKSEDFNKIA 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DDQ+ET ++ R G G+ G+C ++ N I RP L + +I ++L + Sbjct: 126 VAHHLDDQVETFFLHLFR-----GSGIDGLCGIQYHNKN--IIRPLLDVSKSEILNYLDE 178 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 +I + D +N +R ++R Sbjct: 179 NDIDYVTDETNFVADVQRNKIR 200 >gi|19553892|ref|NP_601894.1| ATPase [Corynebacterium glutamicum ATCC 13032] gi|62391535|ref|YP_226937.1| PP family ATPase [Corynebacterium glutamicum ATCC 13032] gi|61216526|sp|Q6M2E8|TILS_CORGL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41326877|emb|CAF20721.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Corynebacterium glutamicum ATCC 13032] Length = 314 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 25/207 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++VR +++ H+ + +SGG DS+ L+ A VL+++S + +AI +DH Sbjct: 17 FLELRKAVRPYLKE-----HVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHN 64 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L +T EV + + +R A ++V P G+ AAAREARYA ++ I Sbjct: 65 L-QTGSAEVTHNAAAMARHMGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI---- 119 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 AHT DDQ ET + R +GM D L I RP L RR Sbjct: 120 -WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ + DP N DD F RV +R V Sbjct: 172 VELGLKPWHDPQNFDDAFRRVAIRNQV 198 >gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein) [NC10 bacterium 'Dutch sediment'] Length = 468 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 13/196 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L +++AVSGG DSM +L L + + R G + + ++ D E+A + R+V Sbjct: 17 RMLAAGEAVVLAVSGGVDSMAMLHLLLHLRT-RYHGPLHVAHLNHDLRGAESA-ETARFV 74 Query: 74 SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C +I ++ + L AAAR+ RY + A A I H D Sbjct: 75 QRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQGAGRIAVGHHRD 134 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV M R +G+G + + I RP + C RE+I ++ + I + Sbjct: 135 DQAETVLMNLLRGSGVRGIGG-------IPPVRGRIIRPLIDCSREEIERYVRKERIPYV 187 Query: 190 EDPSNTDDRFERVRVR 205 ED SN + R R+R Sbjct: 188 EDSSNHVLAYSRNRIR 203 >gi|50913357|ref|YP_059329.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394] gi|61217204|sp|Q5XEL7|TILS_STRP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50902431|gb|AAT86146.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394] Length = 428 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|227540926|ref|ZP_03970975.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183186|gb|EEI64158.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 270 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 28/190 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG DS+ L AL + + +A+ +DH L +D R VS+ +R+ Sbjct: 1 MAVGLSGGPDSLALTAALVAE-------GVHVTALCIDHGL----QDGSREVSEEAARIA 49 Query: 82 ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 A + V N P T +AAR+ARY +E + AHT DD ET + Sbjct: 50 RSWGAEARVIPINVDPPT--ESAARQARYRAFAEWGGPV-----CVAHTMDDLAETFLIA 102 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GM GM +T + I RP L RR D + + ++ DP N D Sbjct: 103 GLR-----GM-TCGMRETAEVE-GAHIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADRA 155 Query: 199 FERVRVRRFV 208 F RVRVRR V Sbjct: 156 FTRVRVRREV 165 >gi|170757599|ref|YP_001783167.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra] gi|169122811|gb|ACA46647.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra] Length = 468 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L ++ + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ +L+I RP + REDI ++ + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191 Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247 + R ++R +++D + + +F ++ K NN + + +Y T ++ Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251 Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 +I+ I+Q++ N++ ++ +L +S G ++LP Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFVNLPSNI 311 Query: 286 SMERV 290 E + Sbjct: 312 KAENI 316 >gi|126656632|ref|ZP_01727846.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110] gi|126621852|gb|EAZ92560.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110] Length = 323 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 27/202 (13%) Query: 15 SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---- 68 SL+ P ++IL+AVSGG DS+ LL + + S + I++ HC A D Sbjct: 20 SLILPHQSNILIAVSGGQDSLCLLKLIVDLQSKWGW------KIAIGHCDHGWASDIGIA 73 Query: 69 ----EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 E+ Y ++ L++A ++ K ++ AAARE RY + E A T ++T Sbjct: 74 DHVRELAYHWNIPFYLKVAEAM---KETE------AAAREWRYQSLVEIANKNEFTEVVT 124 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT D+ ET+ R KG+G + ++L RP L+ R + +F Q Sbjct: 125 GHTLSDRAETLLYNLIRGSGSKGLGSLTWKRPLSNKISL--VRPLLKVSRPETLAFCQQF 182 Query: 185 NISWCEDPSNTDDRFERVRVRR 206 ++ ED N + + R R+R+ Sbjct: 183 DLPIWEDAVNANLDYARNRIRQ 204 >gi|224023875|ref|ZP_03642241.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM 18228] gi|224017097|gb|EEF75109.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM 18228] Length = 437 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 21/196 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYV 73 L+ +LVA+SGG+DS+ LL L + + A + LR E+ +DE R+V Sbjct: 16 LLSGERVLVALSGGADSVALLCVLQEL-------GYRLEAAHCNFHLRGEESDRDE-RFV 67 Query: 74 SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C R +I V+ + + + + AARE RY E ++ AH D Sbjct: 68 RQLCERRQIPLHVIHFSTGAYAASRKISIEMAARELRYRWFEELRDQGGFRVVAVAHHRD 127 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ + R G G++G+ + +N + RP L RE I ++L + + Sbjct: 128 DSVETLLLNLTR-----GTGINGLRG--IRPVNGTVVRPLLGVSREAILTYLDRLGQPYV 180 Query: 190 EDPSNTDDRFERVRVR 205 D +N +D + R ++R Sbjct: 181 TDSTNLEDAYARNKIR 196 >gi|331703058|ref|YP_004399745.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801613|emb|CBW53766.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 401 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS+ LL + ++ + A V++ R + ++ V+++C +L + Sbjct: 13 LIAVSGGPDSVFLLCNVVKLVEPNNL-----VACHVNYNFRSDSNNDQMIVTNLCKQLNL 67 Query: 83 AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ S + + AR RY + A ++ AH +D +ET ++ Q Sbjct: 68 KLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLLQLQ 127 Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ GL S D ++Y RP L ++ I S+L IS+ D +N+D Sbjct: 128 RNNLVDYYGLRPVSHYKDLVVY-------RPLLDIKKSQILSYLDTNKISYAIDSTNSDT 180 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 181 KYQRNKIR 188 >gi|299067222|emb|CBJ38419.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CMR15] Length = 462 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRRED 176 ATL++TAH DDQ ETV ++ R G GL G+ + ++ + + RP+L R D Sbjct: 122 GATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMAHERRVTLLRPWLDVPRGD 176 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 I ++ ++W EDPSN D R+ R +R + + H Sbjct: 177 IEAYARAHALAWVEDPSNGDARYARNALRPLLAGMAGH 214 >gi|73749106|ref|YP_308345.1| PP-loop family protein [Dehalococcoides sp. CBDB1] gi|123620029|sp|Q3ZYX5|TILS_DEHSC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|73660822|emb|CAI83429.1| PP-loop family protein [Dehalococcoides sp. CBDB1] Length = 471 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 16/244 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 IL+AVSGG DS+ +L +H + + F ++H LR D + YV+++ S Sbjct: 21 EILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLRAEESDRDAAYVTELASA 77 Query: 80 LRI--AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + VS K ++ L AARE RYA + A + + HT DD +ETV Sbjct: 78 LGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFGSAAVAVGHTLDDNIETV 137 Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R +G+ GL + + TI L + RP L R + + + + + +D + Sbjct: 138 MLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAETQVYCREAGLLPRQDIT 197 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251 N R R+R V L L F++ LR M + +T M++ + Sbjct: 198 NLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 253 Query: 252 ISQD 255 I QD Sbjct: 254 IRQD 257 >gi|329962376|ref|ZP_08300380.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057] gi|328530099|gb|EGF56984.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057] Length = 423 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 23/205 (11%) Query: 9 VRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--E 64 V+F R+ ++ ILVA+SGG+DS+ LL H +LS A + LR E Sbjct: 7 VQFINRNRLFSPEEKILVALSGGADSVALL---HLLLS----AGYTCEAAHCNFHLRDAE 59 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + +DE +V ++C+ L H + + + AARE RYA E K A Sbjct: 60 SDRDEA-FVRNLCNARHVPLHTVHFDTKREAEERHISIEMAARELRYAWFEEIRKKCGAG 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET + R G G++G+ + N + RP L R++I S+ Sbjct: 119 VIAVAHHQDDSVETFLLNLIR-----GTGINGL--RGIRPKNGKVVRPLLCIGRKEIISY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L ++ D +N D + R ++R Sbjct: 172 LESIGQAYVTDSTNLQDEYTRNKIR 196 >gi|297621115|ref|YP_003709252.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU 86-1044] gi|297376416|gb|ADI38246.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU 86-1044] Length = 244 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 15/193 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +I VA+SGG DS+ LL L + +S + F +A+ V A ++ Y+S +CS+L Sbjct: 34 NIAVALSGGKDSLTLLFML-AAISGKGFPDFHLAAVHVTGEFSCGAGVDLPYLSAICSKL 92 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I VV N K +T + R L+ E A+ + A I H DD +T+ M Sbjct: 93 NIPF-VVKESNQKLETLECYSCSRERRKLLFEAAEQLGAKTIAFGHHRDDNAQTILM--- 148 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDP------ 192 + KG + + D I RP E+IR F Q+ S C P Sbjct: 149 -NMLHKGEFCGNLPKLHMIDYGKTIIRPLTYVSEEEIRRFAEQQGFSRVMCRCPVGQNSM 207 Query: 193 -SNTDDRFERVRV 204 DD E + V Sbjct: 208 RKKVDDLIEEIEV 220 >gi|153808575|ref|ZP_01961243.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185] gi|149128897|gb|EDM20114.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185] Length = 426 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 17/190 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + ILVA+SGG+DS+ LL LH+ F H E + + +V +C + Sbjct: 20 SKILVALSGGADSVALLRILHTAGYHCEAAHCNF------HLRGEESNRDESFVRQLCLK 73 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + ++ + AARE RY E A +I AH DD +ET+ Sbjct: 74 YNIRLHTTDFNTTQYAAEKHISIEMAARELRYNWFEEIKNKYRADVIAVAHHQDDSIETM 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G G++G+ + N I RP L R++I +L + D +N Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNRKEIIQYLQNIEQDYVTDSTNL 186 Query: 196 DDRFERVRVR 205 +D + R ++R Sbjct: 187 EDEYTRNKIR 196 >gi|147669868|ref|YP_001214686.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1] gi|289433082|ref|YP_003462955.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT] gi|146270816|gb|ABQ17808.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1] gi|288946802|gb|ADC74499.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT] Length = 476 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 16/244 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 IL+AVSGG DS+ +L +H + + F ++H LR D + YV+++ S Sbjct: 26 EILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLRAEESDRDAAYVTELASA 82 Query: 80 LRI--AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + VS K ++ L AARE RYA + A + + HT DD +ETV Sbjct: 83 LGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFGSAAVAVGHTLDDNIETV 142 Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R +G+ GL + + TI L + RP L R + + + + + +D + Sbjct: 143 MLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAETQVYCREAGLLPRQDIT 202 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251 N R R+R V L L F++ LR M + +T M++ + Sbjct: 203 NLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 258 Query: 252 ISQD 255 I QD Sbjct: 259 IRQD 262 >gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170] gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170] Length = 434 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 21/192 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 + L+A SGG DS+ +L L S L + FS + LR E+ KDE R+V ++ Sbjct: 19 SRFLLACSGGLDSV-VLAHLCSELG------LDFSLAHCNFKLRDIESDKDE-RFVKELA 70 Query: 78 SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L++ V+ + ++ + AAR+ RY K + ++TAH DD +E Sbjct: 71 EILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQHSIKTLVTAHHADDNIE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R G G+ G+ T + ISRP L R I + Q NI W ED S Sbjct: 131 TFLINLSR-----GTGIKGL--TGIPSKTNEISRPLLAFSRLQIMEYAKQSNIEWREDQS 183 Query: 194 NTDDRFERVRVR 205 N + ++ R ++R Sbjct: 184 NKETKYLRNKIR 195 >gi|192362306|ref|YP_001981512.1| mesJ protein [Cellvibrio japonicus Ueda107] gi|190688471|gb|ACE86149.1| mesJ protein [Cellvibrio japonicus Ueda107] Length = 455 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 12/184 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ V SGG DS LL AL + ++ A+ V+H + A D + + + Sbjct: 47 PSRWWVGFSGGLDSAVLLHALVQLQL-----PVQICALHVNHQISPHADDWQAHCEALAA 101 Query: 79 RLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL +A ++ W ++ + G+ AAR+ARY + ++ + ++TAH DDQ ET+ + Sbjct: 102 RLGVAFYAEKVWVINRGK-GIEDAARQARYHIFEQYLAPHDC--VLTAHHADDQAETLLL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G L+ M W+ RP L R+ + + + W +D SNTD Sbjct: 159 RLMRGTGPRG--LAAMAGKRPLGQG-WLVRPLLSFSRKLLEDYARIHRLVWVDDESNTDL 215 Query: 198 RFER 201 ++R Sbjct: 216 HYDR 219 >gi|312888854|ref|ZP_07748417.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603] gi|311298729|gb|EFQ75835.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603] Length = 445 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 35/251 (13%) Query: 5 PIES-VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 P++S + F ++ ++ + +LVAVSGG DS + L +L F + HC Sbjct: 3 PVQSFLNFIAQNQLFTQNDRLLVAVSGGRDS----VVLAHLLKQAGFN------FGIAHC 52 Query: 62 ---LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGL--MAAAREARYALISEH 113 LR + A+ E + S + L + +S+ Q G+ AAR+ RY + Sbjct: 53 NFQLRIDEAQAEQAFTSQLADALTVPFHTISFDTQTYARQNGISTQMAARDLRYTWFEQI 112 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + I AH +D +ET+ + R G G++GM + N ++ RP L Sbjct: 113 RNEHGYSYIAVAHHQNDSVETILLNLTR-----GTGIAGMHGIL--PQNGYLVRPLLFLN 165 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDID--LHALYLK-MKKFQDL 226 R++I + + Q + + ED SN ++ R ++R V ++++ L + + M++F++L Sbjct: 166 RDEIDTIVDQNGLHFMEDSSNASSKYARNKIRHQVIPPLKELNPKLEETFDRNMERFREL 225 Query: 227 RVKVNNAVAML 237 + +N+ + L Sbjct: 226 ELLLNHQLEQL 236 >gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 426 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 6/184 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS+ LL L L +K +DH R+ ++ E + + L Sbjct: 19 ILVGLSGGPDSIALLYLL---LKCAKMIPLKLGIAHIDHRWRQESEKEAETLKTLAESLH 75 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + L AA R+ RY +E A + ++ H DDQ ET+ R Sbjct: 76 VPFHLKVLDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDDQAETILKRILE 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L G+ +T L I RP L + I S+L + +I + D +N D +F R Sbjct: 136 --GASLVKLRGIAETKQQG-GLAIWRPLLEVDKAKILSWLSKHDIPFFNDSTNLDPKFLR 192 Query: 202 VRVR 205 ++R Sbjct: 193 GKMR 196 >gi|119774292|ref|YP_927032.1| cell cycle protein MesJ [Shewanella amazonensis SB2B] gi|119766792|gb|ABL99362.1| cell cycle protein MesJ [Shewanella amazonensis SB2B] Length = 497 Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 7/184 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ +++ SGG DS + AL + + V H L A R+ + Sbjct: 27 PSKLVLGYSGGLDSELMACALSHYAKKHPGTQCLL--VHVHHGLSPNADTWARHCEHRAA 84 Query: 79 RLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + + + + L A AR ARYA + H +++TAH DDQLETV + Sbjct: 85 RYELEFVLEKVRVKQGARLSLEAEARSARYAALMAH--LAEGDVLLTAHHQDDQLETVLL 142 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R KG+ G ++ D + RPFL RE + ++S ED SN D Sbjct: 143 ALARGLGPKGLAAMGQQQSL--DDGAFQVRPFLGLSREYLEDAASALDLSHIEDESNQDT 200 Query: 198 RFER 201 RF+R Sbjct: 201 RFDR 204 >gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15] gi|259533717|sp|B1YGQ4|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15] Length = 414 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 17/186 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79 +LVAVSGG DSM L L+ D + V H LR+ + +E V R Sbjct: 12 LLVAVSGGCDSMVLAHLLYEANHD-------LMIVHVHHGLRKESDEEAEAVRAWAEARR 64 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + I + + W+ P AA R RYA E ++ AH DDQLET+ ++ Sbjct: 65 VGIRMTRLEWEGQAPS---QAACRTRRYAFFQEVMAETGRRHLVLAHHRDDQLETLLIQL 121 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R A G+ G+ + I RP L ++ + + R + W ED +N ++ Sbjct: 122 IRGEA----GVDGIPRIRSFATG-QIHRPLLPYSKQQLYDYAKARQVVWHEDETNAGTKY 176 Query: 200 ERVRVR 205 R ++R Sbjct: 177 LRNQMR 182 >gi|319936954|ref|ZP_08011364.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1] gi|319807890|gb|EFW04469.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1] Length = 411 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 12/190 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++ ++ VSGG DSM LL L R G A V++ R + + V D C+ Sbjct: 10 SYYVIGVSGGCDSMYLLDTL------RKKGYHLLVA-HVNYNYRHDSYIDYELVCDYCAT 62 Query: 80 LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + G AR RY E K ++ H DD LETVYM+ Sbjct: 63 HGLPFYYKQFHEADYHDGNFQDQARTLRYRFYKEIYKLYKCDGLILGHHLDDHLETVYMQ 122 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R +G+ Y ++ + RP +R +++I +++I + +D +N + Sbjct: 123 LERHNTVHYLGIKEES----YVQDMRVIRPLMRSYKDEILQVCHEQHIEYHDDYTNFEID 178 Query: 199 FERVRVRRFV 208 FER R+R + Sbjct: 179 FERDRIRNTI 188 >gi|28894923|ref|NP_801273.1| cell cycle protein [Streptococcus pyogenes SSI-1] gi|71902678|ref|YP_279481.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180] gi|61217343|sp|Q879R7|TILS_STRP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28810168|dbj|BAC63106.1| putative cell cycle protein [Streptococcus pyogenes SSI-1] gi|71801773|gb|AAX71126.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180] Length = 428 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|302346698|ref|YP_003814996.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC 25845] gi|302150433|gb|ADK96694.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC 25845] Length = 456 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL+ + + G + A+ + LR E+ +DE ++ D+C R Sbjct: 22 LVALSGGADSVALLLCI------KELG-YRVEAVHCNFHLRGEESLRDE-QFCEDLCQRE 73 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + + + AARE RY + + + A + H +D +ET+ Sbjct: 74 NIPLHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGADGVCVGHHKEDSVETIL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GLSG+ + N + RP L R++I +L Q +S+ D +N Sbjct: 134 INLVR-----GTGLSGLMG--IRPRNHDVIRPLLCVTRQEIEDYLHQHAVSFVTDSTNLI 186 Query: 197 DRFERVRVR 205 D R ++R Sbjct: 187 DDVVRNKIR 195 >gi|309778158|ref|ZP_07673093.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53] gi|308914067|gb|EFP59872.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53] Length = 406 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 12/183 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL R G ++ +++ R+TA ++ V C+ I Sbjct: 13 IIGVSGGPDSMALLDMC------RKEG-LRLVVAHMNYQKRDTANRDMELVRSYCAHFHI 65 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + A ARE RY + E K +A+ ++ AH DD LET M +R Sbjct: 66 PFEA-RLQTKRCVGNFQAFAREERYRMYQELLKQYDASAVLLAHHLDDHLETYLMAKERG 124 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 ++ +G+ + + I RP + + ++ ++ + + + D SN D + R Sbjct: 125 SMKEYLGIQEEA----FIMGCRIIRPLMAYSKRELEAYCRENAVPFGIDESNLSDHYARN 180 Query: 203 RVR 205 R+R Sbjct: 181 RIR 183 >gi|253581056|ref|ZP_04858317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847719|gb|EES75688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 485 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 33/203 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKD-EVRYVSDVCS 78 +L VSGGSDSM +L L + GK+ F+ + + H +R D + +V ++C Sbjct: 21 VLAGVSGGSDSMAMLRILKELQ-----GKLDFTLRVVHIHHGIRGKEADRDQSFVENICR 75 Query: 79 RLRIAHSVV---------SWKNSKPQTGLM----AAAREARYALISEHAKTINATLIMTA 125 + +I +V WK + +TG + A REA A+ I L A Sbjct: 76 KWQIPCTVYCYDVPGLSREWKLGEEETGRIVRKEAFQREA--AVCGRKDSEIKIAL---A 130 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D ET+ R G GL G+C + ++ I RP L R+ I +L ++ Sbjct: 131 HNQEDLAETMLHNLCR-----GTGLRGLC--TMRPVDGEIIRPILCLSRDKIAEYLKEKK 183 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 IS +D +N D + R R+R + Sbjct: 184 ISHIQDSTNLSDEYTRNRIRHNI 206 >gi|94987642|ref|YP_595743.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429] gi|94991508|ref|YP_599607.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS2096] gi|94541150|gb|ABF31199.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429] gi|94545016|gb|ABF35063.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS2096] Length = 428 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|139472899|ref|YP_001127614.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo] gi|134271145|emb|CAM29355.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo] Length = 428 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRYLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|86742988|ref|YP_483388.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3] gi|86569850|gb|ABD13659.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3] Length = 595 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 13/201 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR V L +LVA SGG DS+ L AL V R+ ++ ++VDH + Sbjct: 43 AVRRAVTDLPPGGLVLVACSGGPDSLALAAALAFVAPRRA---LRAGMVTVDHGWDTGST 99 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V+ L + V +++ G+ AR A I+ A + A ++ HT Sbjct: 100 ERAERVARQGRALGLDPVEVLTEHTARSEGIARQAR---RAAIAAAADRLGARAVLLGHT 156 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + +G D +L SRP L RR D R+ L + Sbjct: 157 LDDQAETVLLRLARGAGARSLGGMSADDGLL-------SRPLLGIRRADTRAACLAEGLE 209 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 +DP+N D F R RVR V Sbjct: 210 VWDDPTNRDPAFTRSRVRHTV 230 >gi|219849533|ref|YP_002463966.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485] gi|219543792|gb|ACL25530.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485] Length = 474 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 64/373 (17%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 A +LVAVSGGSDS+ LL L ++ ++ G + A +DH LR E+A D +V+ + Sbjct: 19 ARLLVAVSGGSDSLALLHMLAALYAE--GGPVPIVA-HLDHGLRGAESAADAA-FVTSLA 74 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + +V+ + P T A AR RY ++ A ++ AH DDQ ETV M Sbjct: 75 AEWGL-RAVIEQAHLPPGT-TSATARIVRYTFLARTAIAEGVDAVLVAHQADDQAETVLM 132 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS----------------RPFLRCRREDIRSFL 181 R +GL GM + +++ + W + RP L RR + + Sbjct: 133 HLLRGAGP--VGLRGMRERVVW--SEWAAPAIAAGVVPSSGPPLLRPLLTIRRTTLADYC 188 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAV 234 ++ +DP+N + + R R+R + + +Y + + + + + + Sbjct: 189 KMHALTPRDDPTNRNLHYLRARIRHQLLPQLATENPQIYAALNRTARICAEDYDYIQQML 248 Query: 235 AMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 A+ PK + R +IA + L + L Y LR + A G + P ++ + Sbjct: 249 AVQWPKLIAERRRGLIAFDRAALRVLHPALQRYALRRAVAELGAE--EPSLAQIDAALQM 306 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 LK G+ G R +R P L+L ++ TV L D+ Sbjct: 307 LK-GQAG-------------------RQMRLTPQLVLTCDQLTV------TVALPDAEPP 340 Query: 354 IGPQSYRKADVPS 366 + PQ Y +P+ Sbjct: 341 VAPQVYEPVSLPT 353 >gi|163847595|ref|YP_001635639.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525450|ref|YP_002569921.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl] gi|163668884|gb|ABY35250.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449329|gb|ACM53595.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl] Length = 474 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 28/207 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 A +LVAVSGGSDS+ LL L ++ R+ G A +DH LR E+A D +V+ Sbjct: 19 ARLLVAVSGGSDSLALLHMLCTL--HRAGGPTPIVA-HLDHGLRGAESAAD-ADFVAATA 74 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++V + P T A AR ARY ++ A + ++ AH DDQ ETV M Sbjct: 75 TAWGV-RAIVGRAHLPPGT-TPAEARTARYTFLATTALAEHVDAVLVAHQADDQAETVLM 132 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS----------------RPFLRCRREDIRSFL 181 R GL GM + + + W + RP L R ++ ++ Sbjct: 133 HLLRGAGPA--GLRGMRARVEW--SEWAAALIESGQAPPHGPPLLRPLLTVSRSELAAYC 188 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ +DP+N + + R R+R + Sbjct: 189 AAHQLTPRDDPTNRNLHYVRARIRHVL 215 >gi|19745210|ref|NP_606346.1| cell-cycle protein [Streptococcus pyogenes MGAS8232] gi|61217382|sp|Q8P322|TILS_STRP8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|19747299|gb|AAL96845.1| putative cell-cycle protein [Streptococcus pyogenes MGAS8232] Length = 428 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRYLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|163857761|ref|YP_001632059.1| cell cycle protein MesJ [Bordetella petrii DSM 12804] gi|163261489|emb|CAP43791.1| cell cycle protein MesJ [Bordetella petrii] Length = 367 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 11/192 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG+DS ++A H+ R G I V H L+ A D +V + L+ Sbjct: 56 LAVAVSGGADSA--MLAAHAAPLARRLG-IDLLIFHVHHGLQAAADDWAAHVQALGRILQ 112 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ H+ + + G+ AAAR+ARYA +++ A+ A I+ AH DQ ETV +R Sbjct: 113 VSVHTSRAQVRADSGLGIEAAARDARYAALADLARQHEAGHILLAHHQGDQAETVLLRLL 172 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSFLLQRNISWCEDPSNTD 196 R +GM + M ++ D L++ RP+L R DI ++F Q +DP+N D Sbjct: 173 RGAGVQGM--AAMAPSMPRDGLLYL-RPWLNQGRADILRAAQAFAAQHGWQPVQDPTNAD 229 Query: 197 DRFERVRVRRFV 208 R+ R VR + Sbjct: 230 PRYTRAAVRELL 241 >gi|189346163|ref|YP_001942692.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245] gi|189340310|gb|ACD89713.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245] Length = 325 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 37/223 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDV 76 H+LVAVSGG DSM LL L +V S + ISV HC LR E + + R+V + Sbjct: 23 HLLVAVSGGPDSMALLYLLCAVAS------VVRCRISVAHCNFQLRGEESDSDERFVMEQ 76 Query: 77 CSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 C L + A SWK S +T AR RY+ + T I T H Sbjct: 77 CRLLGVECFSRQFDTAAVSASWKKSVEET-----ARLQRYSWFETLLQEREMTKIATGHH 131 Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 D ET+ R + G+ G+ M ++ RP L + DI +L ++ I Sbjct: 132 VSDNAETILFNLFRGTSLLGLKGIRAMHGRVI--------RPLLLLHKSDILGYLQEKEI 183 Query: 187 SWCEDPSNT----DDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + D SN D F R RV + + H L + +++ + Sbjct: 184 PFRTDASNESIDYDRNFIRNRVIPLIEERFEHKLTVSLQRLSE 226 >gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 503 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 22/208 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ + VA+SGG DSM L L + R + AI++DH R + +E + V Sbjct: 21 PSKVAVALSGGPDSMLLTWLLQN--QKRQMKNLDIYAITIDHKYRSGSHEEAKKVHQWIK 78 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + S + + K T ARE RY ++S+ + ++ H DDQLE Sbjct: 79 DWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESIPVLFMGHHRDDQLE 138 Query: 134 TVYMRSQRDYAEKGMGLSGM-------------CDTILYDLNLWISRPFLRCRREDIRSF 180 T R Q + + GL+G + L + I+RPFL ++DI Sbjct: 139 TFIQRLQGNSS--IFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARPFLEFDKKDILET 196 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208 I + D +N D R R++ Sbjct: 197 CNANGIHYVTDLTNGDVGLTRRNYLRYL 224 >gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] Length = 556 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL L ++ R +G +DH LR A + +V +C Sbjct: 21 LLVAVSGGGDSVALLRLLLALPEPR-WG---LEVAHLDHALRPDAAEAAAFVRALCWEHG 76 Query: 82 IA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +A H+ V+ L AAR RY ++ AK + A ++TAHT DDQ ETV M Sbjct: 77 VACHTARVDVARIAKDRGWNLEDAARRLRYGFLTRTAKRVGADAVVTAHTQDDQAETVLM 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A G+ +L RP L R +R++L EDP+N D Sbjct: 137 QLLRGAAHL-QGMPARQGRVL--------RPLLEVPRSALRAYLRALGQDCLEDPTNADT 187 Query: 198 RFERVRVR 205 R VR Sbjct: 188 SRTRAWVR 195 >gi|254388634|ref|ZP_05003867.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813246|ref|ZP_06771889.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC 27064] gi|326441644|ref|ZP_08216378.1| tRNA(Ile)-lysidine synthase [Streptomyces clavuligerus ATCC 27064] gi|197702354|gb|EDY48166.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294325845|gb|EFG07488.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC 27064] Length = 371 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L++ + ++V +RL Sbjct: 72 VLVACSGGADSMALASAL--AFEARKL-SVRAGGITVDHGLQDGS---ALRAAEVAARLT 125 Query: 82 I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A +V ++ P+ A YA + E A + A ++ HT DDQ ET Sbjct: 126 AMGLDPVEATAVCVGRDGGPEAAARDAR----YAALDEAADRLGAAAVLLGHTRDDQAET 181 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM + RPFL+ R+ R + +++ +DP N Sbjct: 182 VLLGLARGSGIR--SLSGMA--AVSGTRGRYRRPFLQIDRQTARKACMVQSLPVWDDPHN 237 Query: 195 TDDRFERVRVR 205 TD + R R+R Sbjct: 238 TDPAYTRSRLR 248 >gi|25029100|ref|NP_739154.1| hypothetical protein CE2544 [Corynebacterium efficiens YS-314] gi|259505902|ref|ZP_05748804.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium efficiens YS-314] gi|61216660|sp|Q8FMG0|TILS_COREF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23494387|dbj|BAC19354.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166506|gb|EEW51060.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium efficiens YS-314] Length = 313 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 21/188 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ + +SGG DS+ L V + R+ G + +AI ++H L+E + + + + Sbjct: 31 HVHIGLSGGPDSLAL------VAAARAEGA-EVTAICINHNLQEGSAEVSERAAAQAEHM 83 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + S + P + A AREARYA ++ TI A HT DDQ ET + Sbjct: 84 GATALIRSI--TVPPGSMEAQAREARYAEFAQLTDTIWA-----GHTMDDQAETFLLAGL 136 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +GM + +L + RP L RR D + ++ +DP N D F Sbjct: 137 RGNP------AGM-KSASRRPDLTVIRPLLGVRRADTHGACTELGLTPWQDPQNRDRAFR 189 Query: 201 RVRVRRFV 208 RV +R V Sbjct: 190 RVAIREQV 197 >gi|326328803|ref|ZP_08195139.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1] gi|325953425|gb|EGD45429.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1] Length = 327 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 11/201 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR + L ++VA SGG+DS+ +A +V G + +VDH ++E + Sbjct: 14 VRATLEQLEPGDKVIVACSGGADSL--ALASAAVFEGHKLG-LHVIGATVDHGMQEGSDA 70 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V + + I +V + K G AAAR+ARYA++ + A+ ++A++I+ HT Sbjct: 71 QASKVIAQLAEMGIDETVTATVEVKADGEGPEAAARQARYAVLDQLAERLDASVILLGHT 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + LSGM +D RP L R D + + Sbjct: 131 RDDQAETVLLGLTRGSGAR--SLSGM--RAAFDR---YRRPLLGTTRIDTETACQIEGLD 183 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 +DP N D + R R+R V Sbjct: 184 VWQDPHNRDFAYTRARIRHRV 204 >gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens SBW25] gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens SBW25] Length = 440 Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 A+ V H L+ A + +C L + V+ +P L AAR+ARY E Sbjct: 52 LGAVHVHHGLQTAADAWPAHCQSICDNLGVPLRVMR-VQVQPGASLERAARDARYQAFIE 110 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 T +++T DDQ ET+ R R +G LS M ++ RP L Sbjct: 111 --VTGAGQVLLTGQHRDDQAETLLFRLLRGAGVRG--LSAMPAQRPLAAG-YLVRPLLEV 165 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ ++ + + W EDPSN D RF R +R V Sbjct: 166 SRAELEAYAEEHQLEWIEDPSNADSRFSRNYLRHRV 201 >gi|21232029|ref|NP_637946.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767844|ref|YP_242606.1| cell cycle protein [Xanthomonas campestris pv. campestris str. 8004] gi|61217383|sp|Q8P7L3|TILS_XANCP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|81306178|sp|Q4UWI7|TILS_XANC8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21113767|gb|AAM41870.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573176|gb|AAY48586.1| cell cycle protein [Xanthomonas campestris pv. campestris str. 8004] Length = 435 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 9/191 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA +LVA SGG DS + LH++ + + + A+ V H L A + C+ Sbjct: 15 PAPVLVAYSGGMDSA---VLLHALAATDGYREAGLRAVHVHHGLHADADAWALHCQQQCA 71 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L IA VV + ++ +G A + A + AH DDQ ET +R Sbjct: 72 DLGIALQVVRVQVAR-DSGSGLEAAARAARHAAFAATLAAGEWLALAHHRDDQAETFLLR 130 Query: 139 SQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A GL+ M + LW RP L R D+ ++ + W +DPSNTD Sbjct: 131 ALR--ASGPDGLAAMRPQRPFGPGTLW--RPLLGHARADLAAYAQAHAVRWIDDPSNTDP 186 Query: 198 RFERVRVRRFV 208 + ER +R V Sbjct: 187 QHERNFLRTQV 197 >gi|317476539|ref|ZP_07935786.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA] gi|316907282|gb|EFV28989.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 370 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +++A+SGG+DS+ LL L ++ + F +E+ +DE +V +C++ Sbjct: 22 VIIALSGGADSVALLCLLQTLGYNCEAAHCNFHLRG-----KESDRDEA-FVCQLCAKRQ 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + + AARE RY E + A +I AH DD +ET+ + Sbjct: 76 VPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSGANVIAVAHHRDDSVETLLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R++I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRKEIINYLNRTGQDYVTDSTNLQD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|149372519|ref|ZP_01891631.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49] gi|149354562|gb|EDM43126.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 89/196 (45%), Gaps = 27/196 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 I+VA SGG DS +VL+ R ++ F+ I + HC LR A D + +V ++ Sbjct: 21 IIVACSGGLDS--------TVLT-RLLKQLGFT-ICIAHCNFSLRGEASDGDAAFVENLA 70 Query: 78 SRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + L I ++ N + MAA RE RY E I LI TAH DD L Sbjct: 71 TELDIPFYKTVFDTKAFANDHKLSTQMAA-RELRYQWFKELRTQIKFDLIATAHHADDML 129 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R G G+ G+ T + +L I RP L R +I +F + W ED Sbjct: 130 ETVLINLSR-----GTGIRGL--TGIPELTETIIRPLLPFSRTEILNFAKKSEFYWREDA 182 Query: 193 SNTDDRFERVRVRRFV 208 SN + R +R V Sbjct: 183 SNASTDYLRNDLRHNV 198 >gi|260887811|ref|ZP_05899074.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] gi|260862487|gb|EEX76987.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] Length = 500 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + + I+VAVSGG+DSM LL L + R+ + +H +R E ++++ YV+ Sbjct: 15 LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 71 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C +A SV V + + L AARE RYA + + A I AH DD Sbjct: 72 AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV + +G GL G+ + + RP L C +E++ + I Sbjct: 132 QAETVLQ-----HILRGAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 184 Query: 191 DPSN 194 D +N Sbjct: 185 DATN 188 >gi|163801796|ref|ZP_02195693.1| cell cycle protein MesJ [Vibrio sp. AND4] gi|159174304|gb|EDP59108.1| cell cycle protein MesJ [Vibrio sp. AND4] Length = 409 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 5/100 (5%) Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 AR+ARY +++H + L++T DDQ+ET + +R KG LS M +++ + Sbjct: 71 ARDARYQALAKHIQA--GDLLLTGQHADDQVETFLLALKRGSGPKG--LSSMAESMPFAD 126 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + RPFL +RE I + ++ + W ED SN D RF+R Sbjct: 127 GT-LVRPFLTVKREQIEAVAKEQGLDWVEDESNQDTRFDR 165 >gi|255320834|ref|ZP_05362008.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82] gi|255302003|gb|EET81246.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82] Length = 405 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 13/159 (8%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108 G+I+ AI VDH L+ ++D +V C +L + V + L AREARY Sbjct: 7 GRIR--AIYVDHQLQAQSRDWGIHVQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQ 62 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWIS 166 +H K+ +++ AH DQ ETV +R G G+SG+ D + I Sbjct: 63 AYHQHIKS--GEVLVLAHHQQDQAETVLLR-----LFSGTGISGLSAMKQLDQRHEMPIW 115 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RP L RE I + Q NIS+ +DPSN + ++R R Sbjct: 116 RPMLSLSREQICQWAEQLNISFIDDPSNNNTHYDRAWCR 154 >gi|254448066|ref|ZP_05061530.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015] gi|198262492|gb|EDY86773.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015] Length = 432 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 8/187 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +VA SGG DS LL AL ++ K + AI V H L++ A D + + L + Sbjct: 22 VVAFSGGLDSTVLLHAL-----TKTPHKARLKAIHVHHGLQDVADDWLTHCEQFSRSLDV 76 Query: 83 AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A + P ++GL AR + + +++TAH +DQ ET+ + R Sbjct: 77 AFEAC--RVLVPSESGLSLEARARDARYRALSDSLQSGDVLLTAHHAEDQAETLLLNLMR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + + W RP L + D++S+ Q + W ED SN D++F+R Sbjct: 135 GSGVEGLSAMPELKALSPSRSTWHGRPLLNQSKADLQSYARQFQLQWVEDHSNRDEQFDR 194 Query: 202 VRVRRFV 208 +R V Sbjct: 195 NYLRHRV 201 >gi|330838705|ref|YP_004413285.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] gi|329746469|gb|AEB99825.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] Length = 513 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + + I+VAVSGG+DSM LL L + R+ + +H +R E ++++ YV+ Sbjct: 28 LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 84 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C +A SV V + + L AARE RYA + + A I AH DD Sbjct: 85 AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV + +G GL G+ + + RP L C +E++ + I Sbjct: 145 QAETVLQ-----HILRGAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 197 Query: 191 DPSN 194 D +N Sbjct: 198 DATN 201 >gi|218283935|ref|ZP_03489803.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989] gi|218215514|gb|EEC89052.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989] Length = 394 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 21/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--- 79 +VA SGG DSM LL L+ D I + ++ H R+TA + V D C + Sbjct: 5 VVACSGGPDSMALLDQLNKQGKD-----IVVAHVNYKH--RDTADRDENIVKDYCEKYDI 57 Query: 80 -LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +R+ + V + A AR+ RYA E A +A ++ AH DD +ET + Sbjct: 58 PVRVCYPV------HEKGNFQAWARDVRYAFFEEVADAFDAKILYVAHQMDDVIETYLFQ 111 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R+ GL Y I RP L + +++ + + +S+ D SN + Sbjct: 112 KNRNMICDWYGLKEKSIRQGYQ----IIRPLLNFTKSELQQYCNENGVSFGIDESNLTNH 167 Query: 199 FERVRVRR 206 + R +R Sbjct: 168 YTRNVIRH 175 >gi|53712709|ref|YP_098701.1| putative cell-cycle protein [Bacteroides fragilis YCH46] gi|61216469|sp|Q64WF9|TILS_BACFR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52215574|dbj|BAD48167.1| putative cell-cycle protein [Bacteroides fragilis YCH46] Length = 435 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LV +SGG+DS+ LL L S+ F +E+ +DE +V +C Sbjct: 22 VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + +K + AARE RY K A++I TAH DD +ETV + Sbjct: 76 VLLHIEHFDTTQYATKKHISIEMAARELRYEWFETLRKQREASVIATAHHKDDSVETVLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|297250385|ref|ZP_06864202.2| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768] gi|296839058|gb|EFH22996.1| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 9/182 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ + LH ++ G + + H L A + + C L + Sbjct: 26 VALSGGLDSV---VLLHLLVRAGKKGGFIPKTVHIHHGLSPRADAWADFCQNYCDMLGVE 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K G+ AAAR+ RYA +E + + AH DDQ+ET + R Sbjct: 83 LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + N I RP L R+DI + + + ED SN+D + R R Sbjct: 139 GLR--ALAAMPAVRPFGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196 Query: 204 VR 205 R Sbjct: 197 FR 198 >gi|270159842|ref|ZP_06188498.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968] gi|289165400|ref|YP_003455538.1| cell cycle protein MesJ [Legionella longbeachae NSW150] gi|269988181|gb|EEZ94436.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968] gi|288858573|emb|CBJ12454.1| cell cycle protein MesJ [Legionella longbeachae NSW150] Length = 460 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 18/190 (9%) Query: 21 HILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V SGG DS LL AL H +L D K A+ V+H + A + C Sbjct: 19 QLIVGFSGGLDSTVLLHALAAHPILLD------KIVAVHVNHGINANADFWQEHCKQFCQ 72 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +L ++ S + + + AR ARY++ S K + ++ H DDQ ETV ++ Sbjct: 73 KLGVSFRAQSVQFDRS-ANIEEGARIARYSVFSALVKEQDCLIL--GHHLDDQAETVLLQ 129 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G+ G+ + + + RPFL RE + + + W ED SN D Sbjct: 130 LFR-----GAGVDGLAAIPEFAQFGFGRLFRPFLHYYREQLEHYAFLHQLDWVEDESNCD 184 Query: 197 DRFERVRVRR 206 + R +R+ Sbjct: 185 ITYSRNYLRQ 194 >gi|284929532|ref|YP_003422054.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A] gi|284809976|gb|ADB95673.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A] Length = 319 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 15/196 (7%) Query: 15 SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVR 71 SL+ P ILVAVSGG DS+ LL + + +IK+ +S+ HC D Sbjct: 16 SLILPPKKRILVAVSGGQDSLCLLKIIMDL-------RIKWDWEVSIAHCDHGWPSDT-- 66 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +SD ++ ++ + K ++ + ARE RY ++ E A+ N T I+T HT D Sbjct: 67 GISDHVKKISEEWNIDFYLKRTQILKITESIAREWRYKVLLEVARENNFTAIVTGHTLSD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV R G+ + + +NL RP L R + F Q N+ E Sbjct: 127 LAETVLYNLIRGAGSHGLSVLTNTRPLTNSINL--VRPLLNTSRTETLFFCRQLNLPVWE 184 Query: 191 DPSNTDDRFERVRVRR 206 D NT+ + R R+R+ Sbjct: 185 DEVNTNFDYARNRIRK 200 >gi|254444811|ref|ZP_05058287.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium DG1235] gi|198259119|gb|EDY83427.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium DG1235] Length = 478 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 19/197 (9%) Query: 22 ILVAVSGGSDSMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 + VA SGG+DS+ +L+ L+ SDR G ++ + +H LR A D + + ++C Sbjct: 33 LYVACSGGADSVFALMLVFLYLKNSDR-LGSLRV--LHFNHGLRGDASDGDAEFAKELCD 89 Query: 79 RLRIA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLET 134 L I + W + + A REAR + AT ++T H DD ET Sbjct: 90 GLSIPFLDAKADWAVALDKV-TEAIGREARLGFFRKATGASAATPAWVVTGHHADDVAET 148 Query: 135 VYMRSQRDYAEKGMGLSGMC---DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + MR R G GL G+ + + RP L R++I+S L ISW ED Sbjct: 149 MLMRLSR-----GSGLEGLTAPREVSKAGGGIHFLRPLLGFTRKEIQSTLEGCGISWRED 203 Query: 192 PSNTDDRFERVRVRRFV 208 +N DR R R+R+ V Sbjct: 204 ATNDSDRNYRARLRKSV 220 >gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1] gi|300073983|gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control, protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 9/193 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS +L+ + + + + G + + + V H L A + + C++L Sbjct: 13 LAVAYSGGLDST-VLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + S +G+ AAR ARYA + + A +++TAH DDQ ETV ++ Sbjct: 72 LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131 Query: 141 RDYAEKGMGLSGM--CDT---ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R GLSGM C+T +L D L ++RPFL R + + ++ W ED SN+ Sbjct: 132 RGSGLA--GLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNS 189 Query: 196 DDRFERVRVRRFV 208 D R+ R +R V Sbjct: 190 DPRYTRNALRHQV 202 >gi|218134795|ref|ZP_03463599.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC 43243] gi|217990180|gb|EEC56191.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC 43243] Length = 522 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 37/218 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++V +SGG+DS+ LL+ L S+ +F + A+ V+H +R E DE+ + +C R Sbjct: 27 VVVGLSGGADSVSLLMVLGSLKERMAF---ELRALHVNHGIRGEEAMHDEL-FTKALCDR 82 Query: 80 LRIAHSVV---------SWKNSKPQTGLMAAARE-ARYALISEHAKTINA---------- 119 L I V S + G A E AR E KT++ Sbjct: 83 LGIRLKTVHIDVPALVQETHMSSEEAGRHARQDEFARLCAEIEKEKTVDRESGQIPGQTG 142 Query: 120 --TLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLS------GMCDTILYDLNLWISRPFL 170 ++ AH DDQ ETV R A KG+ G+S G CD + I RP L Sbjct: 143 RRVVVALAHHMDDQAETVLHNLVRGSALKGLAGMSPVNVMYGTCDGVR--TGYTIIRPLL 200 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 RR I +L N +C D +N + + R R+R + Sbjct: 201 CVRRAAIEEWLRGHNQEYCTDSTNLGNDYTRNRLRNTI 238 >gi|330830699|ref|YP_004393651.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565] gi|328805835|gb|AEB51034.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565] Length = 452 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 11/187 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL+ + R G + SA+ V H L A + V + VC +L Sbjct: 22 LLVAFSGGLDSTLLLVL--AAQYAREHG-LPLSALHVHHGLSPHADEWVAHCEAVCQQLA 78 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V V+ ++ L A AR ARY ++ A+ ++TAH DDQLET+ + Sbjct: 79 VELLVERVTLIRGNGES-LEAQARTARYQRLT--ARMREGEWLLTAHHQDDQLETLLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R + GL+G+ + + L + RP L R ++ W ED SN + + Sbjct: 136 KRGAGLR--GLAGILPSQPFAGGL-LLRPLLDMSRAELADAAASLPFGWVEDESNQEVSY 192 Query: 200 ERVRVRR 206 +R +R+ Sbjct: 193 DRNFLRQ 199 >gi|257470195|ref|ZP_05634286.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] gi|317064411|ref|ZP_07928896.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] gi|313690087|gb|EFS26922.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] Length = 444 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + + +F + + ++H LR E + + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLMKLRENINFDMV---LVHINHLLRGENSDGDEKFSIEYGKKK 79 Query: 80 -LRIAHSVVSWKNSKPQTGLM--AAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L++ ++ GL A R+ARY L E + I A I AH DDQLET Sbjct: 80 GLQVFSRKINITALGKDMGLTLEEAGRKARYDLFKEVFEKIGANKIALAHNKDDQLETFM 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G GL G+ + I+ +++I RP ++DI +L + +I + D +N + Sbjct: 140 FRLTR-----GAGLEGL-EGIVAKRDVYI-RPISEIYKKDIVEYLNKNSIPYRIDETNFE 192 Query: 197 DRFERVRVR 205 + F R +R Sbjct: 193 NEFTRNSIR 201 >gi|217967258|ref|YP_002352764.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724] gi|217336357|gb|ACK42150.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724] Length = 455 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 17/175 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I+++VSGGSDS IAL +L + S G +K + +DH +R+ E + D + Sbjct: 31 IILSVSGGSDS----IALSEILYNLSPILG-LKLHIVYIDHHVRKNTYKEKELIKDYATS 85 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I +S + + P+ R+ RY + + ++ +N I HT DDQ+ET+ M Sbjct: 86 RNIPYSFL---DIYPKDFTEKTLRDERYKALIKFSEELNFNKIALGHTLDDQIETIIMN- 141 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 KG G+ G+C I + +I RP + + ++ + ++++ + +D +N Sbjct: 142 ----FFKGYGMEGLC-GIPVKRDKFI-RPIIILSKSEVIEYCERKSLKYIDDFTN 190 >gi|255659245|ref|ZP_05404654.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544] gi|260848699|gb|EEX68706.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544] Length = 466 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 17/195 (8%) Query: 7 ESVRFF-VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 E+VR+ + L++P H+LVA SGG DS+ L +L R ++ + +H +R Sbjct: 4 EAVRYARAQDLLHPGMHVLVACSGGPDSL---ALLDMLLQLRRRFRLVLTVAHYEHGIRG 60 Query: 64 ETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ ++ R+V C I H V + AARE RY + + + A Sbjct: 61 ASSAEDARFVDAFCREREVPCFIGHGDVPAFAKAQGKSVELAARELRYVFLWQTLERCGA 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ TAH DDQ ETV MR R G GL G+ + RP L RREDI Sbjct: 121 DVLATAHHADDQAETVLMRILR-----GTGLDGL--AAMKPREGKKIRPLLFARREDILD 173 Query: 180 FLLQRNISWCEDPSN 194 + +R ++ D +N Sbjct: 174 YCRERGLTPRHDATN 188 >gi|163841946|ref|YP_001626351.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC 33209] gi|162955422|gb|ABY24937.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC 33209] Length = 363 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 9/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L + +SF + AI VDH L++ + + + Sbjct: 47 VLVACSGGPDSLALAAVAAFFNNRKSF---RVGAIIVDHGLQDGSAAVAQQTAAKLRAFG 103 Query: 82 IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A + + + P G +AR ARY + A A ++ HT DDQ E V + Sbjct: 104 LAPVEIRTVDVVAGP-GGPEDSARVARYGALEAAAVEHGAVAVLLGHTLDDQAEQVMLGL 162 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSGM + + + RPFL RE+ + ++ DPSN+D F Sbjct: 163 ARGSGTRS--LSGMPARREFPGGVHL-RPFLPLSREETEAICAVESLEPWRDPSNSDPGF 219 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 220 TRSRIRHDV 228 >gi|39938615|ref|NP_950381.1| hypothetical protein PAM_129 [Onion yellows phytoplasma OY-M] gi|61216552|sp|Q6YR87|TILS_ONYPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39721724|dbj|BAD04214.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 12/186 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM LL H +++ KIK + +H R + V C L+ Sbjct: 17 IIAVSGGVDSMALL---HCLVAQ----KIKLQVVHFNHLARPNVWKDKELVQSYC--LQN 67 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + ++ + PQ A AR R + + A I+TAH DD ET+ + R Sbjct: 68 SLCFHYFELNCPQKNFQAQARLLRQQKLMQIATKHQTPFILTAHHLDDLAETILQKITR- 126 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + +G SGM + +++ +PFL + I S+ I + ED +N + ++R Sbjct: 127 -SSTLLGYSGMQIQTSWQDFIFL-KPFLYVPKAKIISYAAFYQIPFLEDYTNQNFTYQRN 184 Query: 203 RVRRFV 208 ++R V Sbjct: 185 QIRHQV 190 >gi|157372000|ref|YP_001479989.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568] gi|189035972|sp|A8GIC1|TILS_SERP5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157323764|gb|ABV42861.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568] Length = 436 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 121/290 (41%), Gaps = 27/290 (9%) Query: 12 FVRSLVYPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 R L H+LVA SGG DS + LL+ L L D ++ A+ V H L A Sbjct: 10 LARQLGAHRHLLVAFSGGLDSSVLLHLLVGLRQQLPD-----LQLRAVHVHHGLSAFADQ 64 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + C ++ VV Q G + AA A + TL +TA Sbjct: 65 WVTHCRQQCVAWQLP-LVVQHVQVDSQQGGIEAAARAARYSAFASTLAADETL-LTAQHL 122 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET + +R G LS M N + RP L R+ + ++ Q +SW Sbjct: 123 DDQCETFLLALKRGSGPAG--LSAMAAQTSLGNNH-LLRPLLGHSRQQLEAYAQQHQLSW 179 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVH 245 ED SN D RF+ R F+R L L + F + + A L+ + L Sbjct: 180 IEDDSNQDPRFD----RNFLRLQVLPLLNQRWPHFAAATARSASLCAEQEQLLDELLAEQ 235 Query: 246 MRSII----AISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + +++ A++ D +L + F LLR A+ G +++P ++R+ Sbjct: 236 LHNLLDEDRALAIDGLLTCSAARRFALLRRWIALFG--VTMPSREQLQRL 283 >gi|317123757|ref|YP_004097869.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043] gi|315587845|gb|ADU47142.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043] Length = 333 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 11/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DS+ L A + + RS ++ A+ VDH L+E + + C L Sbjct: 28 VLVACSGGTDSL-ALAAALAFEAPRS--GLRGGAVVVDHGLQEGSGAVAEQAAQTCRELG 84 Query: 82 IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ V + +GL A AR ARY I A + A+ ++ HT DDQ E V + Sbjct: 85 LSPVEVMVAEVRITGSGLEADARAARYKAIDAVADRVGASQVLLGHTRDDQAEQVLLGLS 144 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + LSGM ++ RP L R + + DP N D F Sbjct: 145 RGSGAR--SLSGMP----LRRGRFV-RPLLALPRATTTAACEALGVQPWHDPHNEDPSFR 197 Query: 201 RVRVRRFV 208 RVR RR + Sbjct: 198 RVRARRLL 205 >gi|33862207|ref|NP_893768.1| hypothetical protein PMM1651 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61216598|sp|Q7UZL1|TILS_PROMP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33634425|emb|CAE20110.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 336 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 24/201 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--- 76 A++L+AVSGG DSM LL ++ + + ++ ++V H + K +Y ++ Sbjct: 33 ANLLIAVSGGQDSMALLNLINDMKTQHNW------FVNVWHGDHQWHKKSAKYALELKSY 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLI----MTAHTFD 129 C++ I S + +K AR+ RY +SE A + N I +T HT Sbjct: 87 CNKKNI--SFFFDQANKNNISSEEKARDWRYKKLSERANQLLIENQKEIDIYLLTGHTNT 144 Query: 130 DQLETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D ET + R +YA GLS + L ++++ RP L RED + F +NI Sbjct: 145 DNAETFLLNLARGSNYA----GLSNINKKRLLKHHIFLIRPLLIFSREDTKKFCQLQNIP 200 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 EDP+N D +R VR+ + Sbjct: 201 IWEDPTNCDLTIKRNIVRKEI 221 >gi|206901988|ref|YP_002250586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus thermophilum H-6-12] gi|206741091|gb|ACI20149.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus thermophilum H-6-12] Length = 455 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 19/176 (10%) Query: 22 ILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+++VSGGSDS+ L L L S+L+ + + +DH +R E + D + Sbjct: 31 IILSVSGGSDSIALSEILYNLSSILN------LNLYIVYIDHHVRSNTYIEKEIIKDYAT 84 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I +S + + + RE RY + + ++ I I HT DDQ+ET+ M Sbjct: 85 SRSIPYSFLDIYTTDFTEKTL---REERYKALIKFSEKIKFNKIALGHTLDDQIETIIMS 141 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 KG G+ G+C N RP + +E+I + ++N+ + +D +N Sbjct: 142 -----FFKGYGIEGLCGIPTKRDNF--IRPIIILSKEEILEYCKRKNLKYVDDFTN 190 >gi|218130045|ref|ZP_03458849.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697] gi|217987765|gb|EEC54092.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697] Length = 426 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +++A+SGG+DS+ LL L ++ + F +E+ +DE +V +C++ Sbjct: 22 VIIALSGGADSVALLCLLQTLGYNCEAAHCNFHLRG-----KESDRDEA-FVCQLCAKRQ 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + + AARE RY E + A +I AH DD +ET+ + Sbjct: 76 VPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSGANVIAVAHHRDDSVETLLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R++I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRKEIINYLNRTGQDYVTDSTNLQD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|325299729|ref|YP_004259646.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170] gi|324319282|gb|ADY37173.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170] Length = 430 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 19/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 I+VA+SGG+DS+ LL L G A + LR D + +V +C++L Sbjct: 22 IVVALSGGADSVALLRVLLQ-------GGYTCVAAHCNFHLRGKESDRDAAFVQTLCTKL 74 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + + + + AARE RYA E K A +I AH DD +ET Sbjct: 75 QVPLHIHDFDTKSYAEAHRVSVEMAARELRYAWFEEVRKQERAQVIGVAHHRDDSVETFL 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G+ G+ + N I RP L R DI +FL + D +N Sbjct: 135 LNLVR-----GTGIQGLKGIV--PKNGAIVRPLLDVDRTDILAFLASIGQDYVMDSTNQR 187 Query: 197 DRFERVRVR 205 D F R ++R Sbjct: 188 DEFTRNKLR 196 >gi|240275421|gb|EER38935.1| PP-loop family protein [Ajellomyces capsulatus H143] Length = 688 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH R + DE V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98 Query: 79 RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ W + + L AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178 >gi|256826669|ref|YP_003150628.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641] gi|256582812|gb|ACU93946.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641] Length = 378 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/195 (33%), Positives = 92/195 (47%), Gaps = 25/195 (12%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKD-EV 70 R+LV P +L+ VSGGSDS L L S LS + G++ + + V+HCLR A D + Sbjct: 18 RALVLPDQPVLLMVSGGSDSTALAY-LTSDLS--AAGRVGPLALVHVNHCLRGDASDGDA 74 Query: 71 RYVSDVCSRLRIAHSVVSWKNSK--PQTG--LMAAAREARYALISEHAKTINATL----- 121 +V + L + + + QTG L A AR RYA E A L Sbjct: 75 AFVRHLAEALELPYFQYDIDIAALVEQTGENLEAVARSERYAAAQEALSNFCAQLNFPTS 134 Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AHT +D++E YMRS G G G ++ Y +N I RP L R+D+R Sbjct: 135 SGRIFVAHTRNDRVENFYMRSI-----VGCGPGGF-RSMRY-INGCIVRPLLDVSRDDLR 187 Query: 179 SFLLQRNISWCEDPS 193 +L +R + D S Sbjct: 188 DYLRRRALDAQNDAS 202 >gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405] gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678] gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1] gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057] gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408] Length = 425 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L ++S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I + ED SN + + R R+R Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189 >gi|271970343|ref|YP_003344539.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium roseum DSM 43021] gi|270513518|gb|ACZ91796.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium roseum DSM 43021] Length = 337 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 87/187 (46%), Gaps = 16/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYVSDVCSR 79 +LVA SGG+DS+ L L V + SA ++VDH L+E + D V + Sbjct: 27 VLVACSGGADSLALAAGLGFVAP-----RAGLSAGLLTVDHGLQEGSPDRAAGVVRLAPA 81 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + + G AAAREARYA +SE A + A ++ HT DDQ ETV +R Sbjct: 82 FGLDPAEALSVSVGTSGGPEAAAREARYAALSEAAVRLGAAAVLLGHTRDDQAETVLLRL 141 Query: 140 QRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+GM LY RP L R + +S +DP N D R Sbjct: 142 ARGSGTR--SLAGMPARAGLY------RRPLLELGRRTTVAACAALGLSPWDDPHNLDPR 193 Query: 199 FERVRVR 205 + RVRVR Sbjct: 194 YTRVRVR 200 >gi|297180756|gb|ADI16963.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Sphingobacteriales bacterium HF0010_19H17] Length = 441 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 25/195 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVC 77 ILVA+SGG DS+ LL +H + + HC LR E + + ++V ++C Sbjct: 20 ILVALSGGLDSVALLYLMH----------MSGFYVEAAHCNFNLRGEESDGDAQFVKELC 69 Query: 78 SRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L + V ++ + + AAR+ RY E I TAH DDQ+E Sbjct: 70 AALGLPVHVKNFDTAAHANDFGVSIQMAARDLRYVWFEELRSKNGLAYIATAHHRDDQVE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G GL GM + L I RP L R + ++ + ++ ED S Sbjct: 130 TLLINLSR-----GTGLKGMQG--MKSLQNKIIRPLLFTDRSALEVWMQKEKHAYREDSS 182 Query: 194 NTDDRFERVRVRRFV 208 N ++ R ++R V Sbjct: 183 NASIKYSRNKLRHQV 197 >gi|269960608|ref|ZP_06174980.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834685|gb|EEZ88772.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 448 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 17/197 (8%) Query: 22 ILVAVSGGSDSMGLLIALH-----SVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVS 74 I++A SGG DS LL L + + ++S G S A+ V H L A + Sbjct: 22 IVLAFSGGVDSRLLLELLSRYRQANSIDNQSAGSKSVSCHAVYVHHGLSSNADNWANQCL 81 Query: 75 DVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I+ SV NS L+A REARY +++H + L++T DDQ Sbjct: 82 VWAQQAGISCSVEHVNLDINSGESIELLA--REARYQALAKHIQM--GDLLLTGQHADDQ 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET + +R KG LS M +++ + + RP L +RE I + ++ +SW ED Sbjct: 138 VETFLLALKRGSGPKG--LSSMAESMPFADGTLV-RPLLAVKREQIEAVAKEQKLSWVED 194 Query: 192 PSNTDDRFERVRVRRFV 208 SN D R++R +R + Sbjct: 195 ESNQDIRYDRNFLRHHI 211 >gi|325091259|gb|EGC44569.1| PP-loop family protein [Ajellomyces capsulatus H88] Length = 688 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH R + DE V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98 Query: 79 RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ W + + L AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + GL G+ Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178 >gi|118580663|ref|YP_901913.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379] gi|118503373|gb|ABK99855.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379] Length = 485 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 25/194 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----DHCLR--ETAKDEVRYVSD 75 +++A+SGG+DS VL D G +FS V +H LR E+ DE+ + Sbjct: 26 VILALSGGADS--------CVLLDILAGLTEFSPCLVIAHLNHQLRGAESDGDEL-FCRS 76 Query: 76 VCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + R R V+ + L A R AR + + A++ +AT I AH DDQ Sbjct: 77 LAERYGLPFRSRSLDVAALARRQGLNLEDAGRRARLEFLEDVARSFHATAIALAHHADDQ 136 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV MR R G G++G+ I RP L RR +I ++L R + ED Sbjct: 137 AETVLMRLLR-----GSGMTGLRGMSFRGPGGRI-RPLLNSRRCEIDAYLRARGLEHRED 190 Query: 192 PSNTDDRFERVRVR 205 SN D F R R+R Sbjct: 191 ASNRDTAFLRNRIR 204 >gi|315608203|ref|ZP_07883195.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574] gi|315250172|gb|EFU30169.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574] Length = 467 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 25/191 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 +VA+SGG+DS+ LL+ L + G ++ HC LR E+ +DE VS Sbjct: 24 IVALSGGADSVALLLIL------KELG----YSVEAAHCNFNLRGEESKRDEDFCVSLCA 73 Query: 78 SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 SR L AH + + AAR RY + I A I AH +D +ET Sbjct: 74 SRGIKLHRAHFDTFEYAHLHKVSIEMAARNLRYHYFDQLRLAIGAKGICVAHHLNDNVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R G G+ G+ T + N ++ RP L R E+IR +L N ++ D +N Sbjct: 134 LLLNLIR-----GTGIQGL--TGMASRNGFVLRPLLDVRHEEIREYLHSINQAFVIDSTN 186 Query: 195 TDDRFERVRVR 205 +D R ++R Sbjct: 187 LEDDVLRNKIR 197 >gi|163814651|ref|ZP_02206040.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759] gi|158450286|gb|EDP27281.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759] Length = 497 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 H + VSGG+DS+ L+ L + + I+ + ++H +R A D + YV ++C + Sbjct: 37 HCVCGVSGGADSVSLITVLVRLCG---YLGIELHVVHINHMIRGAAADSDQEYVEELCRK 93 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA--TLIMTAHTFDDQLE 133 ++ + V S + A R ARY + +I AH +D E Sbjct: 94 YGVSCNSYNIDVQTMASDRGFTVEEAGRLARYDAFDTVRRQYEGEGCVIAVAHNRNDVAE 153 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV R G G+ G+ + + I RP L C R +I +L + I +C D + Sbjct: 154 TVIFNMAR-----GTGMGGI--KGIAPVRENIVRPLLGCDRSEIEGYLDRMGIPYCTDAT 206 Query: 194 NTDDRFERVRVR 205 N +D + R ++R Sbjct: 207 NNEDDYTRNKIR 218 >gi|150392226|ref|YP_001322275.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF] gi|149952088|gb|ABR50616.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++VA+SGG DS+ LL L + ++ K++ ++H R A+ + +YV++ C +L Sbjct: 21 VVVAISGGPDSVCLLHVLSRL---KAAYKLEIYGAHLNHNFRGMDAQMDAQYVANFCEQL 77 Query: 81 RIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V S + GL + A R RY E + + A+ I AH +DQ ETV Sbjct: 78 NILCFVKSMDVLGYAEKNGLSSEEAGRVLRYEFFEEIGQKVGASKIAVAHNQNDQAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G G+ G+ T + I RP L R I + +S D +N+ Sbjct: 138 MRLLR-----GTGIQGL--TAIRHKRDKIIRPLLETDRGKIEDYCETYELSPRIDQTNSQ 190 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 191 PIYHRNKIR 199 >gi|224541459|ref|ZP_03681998.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM 15897] gi|224525617|gb|EEF94722.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM 15897] Length = 382 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 15/157 (9%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSV-VSWKNSKP----QTGLMAAAREARYALISE 112 V++ LR +++ + V D C AH++ +K P + AR+ RYA E Sbjct: 17 VNYNLRNDTEEDYKVVHDYCK----AHNIPFYYKEFTPDDYVKGNFQTVARDMRYAFYQE 72 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLR 171 KT + H DD +ET+YM +RD +G+ + C L + I RP L Sbjct: 73 VYKTEQCDALCLGHQKDDVIETIYMHLERDSHPDYLGIQEVSC-----RLGMTIIRPLLH 127 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++D+R + +I + +D +N F R R+R + Sbjct: 128 VTKQDLRDYCDDHHILFHDDYTNFQTEFTRDRIRNTI 164 >gi|297588663|ref|ZP_06947306.1| PP-loop family protein [Finegoldia magna ATCC 53516] gi|297574036|gb|EFH92757.1| PP-loop family protein [Finegoldia magna ATCC 53516] Length = 451 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 20/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG+DS+ L L+ + D F + ++H R+TA + + ++ Sbjct: 23 ILIGLSGGADSVFLFNVLYQLKDDLDF---EIKTCHINHSYRDTAIRDENFSREISEEKN 79 Query: 82 IAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I S NS L + R RY +E ++ I AH DDQ+ET Sbjct: 80 IQFFSKKVDMKQFSLDNS---ISLEDSGRILRYNCFNEILESEKLNKIAVAHHLDDQVET 136 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ R G G+ G+C I Y N I RP L + +I ++L + NI + D +N Sbjct: 137 FFLHLFR-----GSGIDGLC-GIQY-RNKDIIRPLLDVSKSEILTYLDENNIEYVTDETN 189 Query: 195 TDDRFERVRVR 205 +R ++R Sbjct: 190 FVADVQRNKIR 200 >gi|329955642|ref|ZP_08296550.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056] gi|328526045|gb|EGF53069.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056] Length = 423 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 I +FF+ PA ILVA+SGG+DS+ LL L ++ + F H E Sbjct: 10 ISQKKFFM-----PADKILVALSGGADSVALLCLLQTLGYECEAAHCNF------HLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C++ ++ +V + + + AARE RY + NA Sbjct: 59 ESDRDETFVRQLCAKRQVPLHIVHFDTLRTAEERHISIEMAARELRYEWFEKIRTKSNAN 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G G++G+ + N I RP L R +I ++ Sbjct: 119 VIAVAHHQDDSVETLLLNLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRNEIINY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L + + D +N D + R ++R Sbjct: 172 LNRIGQDYVTDSTNLQDEYTRNKIR 196 >gi|306826400|ref|ZP_07459714.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782] gi|304431395|gb|EFM34390.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782] Length = 428 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ KI+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDLEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|291279418|ref|YP_003496253.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1] gi|290754120|dbj|BAI80497.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1] Length = 419 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 20/198 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VA SGG DS+ +L H ++ ++ I A ++H +R + D+ ++ + C +L Sbjct: 22 LIVAFSGGKDSLSIL---HFLVKNKDLLSISDIIACHINHQIRPDSDDDEKFAKEFCDKL 78 Query: 81 RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + ++K K + + AAR RY + + I I+TAH DD +E Sbjct: 79 NV--KIYTYKIDVFDYVKKYKVSIEEAARILRYKKLYDLLNDIKYDFIVTAHHKDDLIEN 136 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++R R + + D + I RP L RE I ++ + + D SN Sbjct: 137 FFIRVFRGTPIYNLSGFNINDDV-------IKRPLLNINRECIEEYIDYYQLPFVVDKSN 189 Query: 195 TDDRFERVRVR-RFVRDI 211 D+++ R VR + V++I Sbjct: 190 FDEKYLRNWVRNKIVKEI 207 >gi|224532113|ref|ZP_03672745.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116] gi|224511578|gb|EEF81984.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116] Length = 440 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 23/205 (11%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L L+ A H +R Sbjct: 14 KFYKKNFLSKDRVIVAFSGGADSTTLLLNLKYYLN------NNIIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCS----RLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121 E+ +V C L+I V K+ + G + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIDLKIKKCDVDIKSESVRLGVSIEELARKFRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I AH +DQ+ET+ MR Q + + GL+G+ D +N I RP L R +I +F Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIPD-----VNRNIIRPLLEVSRLEIENF 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 L NIS+ D +N + + R RVR Sbjct: 180 LSLNNISFFVDSTNAQNLYLRNRVR 204 >gi|163750367|ref|ZP_02157607.1| cell cycle protein MesJ [Shewanella benthica KT99] gi|161329857|gb|EDQ00843.1| cell cycle protein MesJ [Shewanella benthica KT99] Length = 467 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 13/186 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A SGG DS L + L R + ++ + V H L + A +V+ SR Sbjct: 29 AKLVLAYSGGVDSELLALGLSEFA--REHHEYRYLLVHVHHGLSDHAD---AWVAHCESR 83 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +S K ++ P+ + A AR ARY + + +A ++TAH DDQLETV Sbjct: 84 AEAYGLAISIKRVVVDTGPRKSVEAEARNARYDAMRSQMEPGDA--LLTAHHLDDQLETV 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R KG+ G D L RP L RE I + + D SN+ Sbjct: 142 LLALTRGLGPKGLAAMGSMQVFGKDKQLI--RPLLSISRELIEAKAKAVGLVHITDESNS 199 Query: 196 DDRFER 201 DD+++R Sbjct: 200 DDKYDR 205 >gi|149921066|ref|ZP_01909525.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1] gi|149818070|gb|EDM77527.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1] Length = 362 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DS+ L L VL +RS G + S VDH LR + DE V + L Sbjct: 43 LLVACSGGADSVATLGLL--VLLERSEG-LTLSVGHVDHGLRPESADEAELVRALAEGLG 99 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + ++ GL A AR AR + A+ A I+ AHT DQ ET+ M Sbjct: 100 LPCFVERAELAR-GPGLPARARAARRGALEAMAEQAGADAIVLAHTATDQAETMLM---- 154 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +A +G GL G+ + D W+ RP L R R + + +DP+N D R Sbjct: 155 -HATRGAGLVGLAAMPVLD-GPWL-RPVLDLTRMQTRELAELLELPFVDDPTNED----R 207 Query: 202 VRVRRFVR 209 ++R ++R Sbjct: 208 EQLRTWLR 215 >gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087] Length = 425 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L R+ D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFRKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|300691851|ref|YP_003752846.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07] gi|299078911|emb|CBJ51572.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07] Length = 474 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 15/214 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS L+ + D + ++ A+ V H L+ Sbjct: 24 VAACAAFVVSGGAPT-VAVALSGGRDSA-ALLHAAAAWRDVAGAPVRLVALHVHHGLQAD 81 Query: 66 AKD-EV---RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 A EV R + V + + VS + G+ AAREARYA + ATL Sbjct: 82 ADAWEVACARMAAAVGAEFHVRRVRVSADAGR---GIEEAAREARYAALDALCAEAGATL 138 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ ETV ++ R G GL G+ + + + RP+L R DI ++ Sbjct: 139 LLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMARQRRVTLLRPWLDVPRSDIDAY 193 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 ++W EDPSN D R+ R +R + + H Sbjct: 194 ARAHALAWVEDPSNDDARYARNALRPLLAGMAGH 227 >gi|78780128|ref|YP_398240.1| hypothetical protein PMT9312_1743 [Prochlorococcus marinus str. MIT 9312] gi|78713627|gb|ABB50804.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76 ++I+++VSGG DSM LL ++ + K+ +ISV DH E + + Sbjct: 33 SNIVISVSGGQDSMALLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKSF 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129 C I+ K K ARE RY + E AKT+ ++T HT Sbjct: 87 CEGKNISFYFDQAK--KENVFTEEKAREWRYKKLCERAKTLLKKDQGGGDIYLLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 145 DNAETFILNLSR--GSNFTGLSNIESKRLIENKIFLIRPILIFSREDTKQFCNDMKIPVW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N+D + +R VR+ + Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221 >gi|323486908|ref|ZP_08092224.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum WAL-14163] gi|323691956|ref|ZP_08106205.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] gi|323399771|gb|EGA92153.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum WAL-14163] gi|323503965|gb|EGB19778.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] Length = 246 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 18/211 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL ALH + + F + + SAI+VD VR +CS Sbjct: 26 IAVGISGGKDSLTLLYALHGL---KRFYPNEFELSAITVDLGFENFDLSPVR---SLCSE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + +VV ++ ++ A + R ++E AK + I AH DD +E Sbjct: 80 LSVPFTVVPTDIGKILFETRKESNPCALCAKMRKGALNETAKQMGCNKIAYAHHRDDLIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +G + T L L + RP + D+ F + ++ C++P Sbjct: 140 TMLL----SLIYEGRFYAFSPKTFLDRTELTVIRPMIYVSEADVIGFKNRFSLPVCKNPC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 D + +R V++ + ++L A +K + F Sbjct: 196 PVDGKTKREYVKQLTKQLNLQAPGVKERLFH 226 >gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66] gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66] gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72] Length = 425 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L V S + I+ + V+H Sbjct: 6 FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--VDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I + ED SN + + R R+R Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189 >gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC 6260] Length = 471 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%) Query: 19 PAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P + +A+SGG DSM L L++ + + + S ++ +I++DH R ++ E + V+ V Sbjct: 23 PRRLAIALSGGVDSMCLAYLLSQYKQVYEPS---LELHSITIDHGYRSDSEIEAQKVAQV 79 Query: 77 CSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I SV K N + AR RYA + N ++ AH DDQ+E Sbjct: 80 VQNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNIS 187 T R +++ + G+ T+ N + + RP L+ + ++ S + I Sbjct: 140 TFIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQ 199 Query: 188 WCEDPSNTD 196 W ED +N D Sbjct: 200 WFEDSTNQD 208 >gi|225869500|ref|YP_002745447.1| PP-loop family protein [Streptococcus equi subsp. equi 4047] gi|254789048|sp|C0MAT4|TILS_STRE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225698904|emb|CAW91895.1| PP-loop family protein [Streptococcus equi subsp. equi 4047] Length = 427 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 18/191 (9%) Query: 18 YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + AH +L+AVSGG DSM LL LH+ + +I+ V+H R + DE Y+ Sbjct: 16 FDAHQAVLIAVSGGVDSMNLLHFLHAFQAKL---QIRIGIAHVNHKQRPESDDEEAYLRS 72 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I V ++ + + AAR RY E + + + ++TAH DDQ ET+ Sbjct: 73 WAKKHAIPIYVAYFQGAFSEN----AARHLRYQFFEEIMQQEHYSALVTAHHADDQAETI 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R + L+G+ + + N + RPFL + ++ N ED SN Sbjct: 129 LMRLIR--GSRLRHLAGIREVQPF-ANGQLIRPFLTVSKAEL------PNPFHFEDHSND 179 Query: 196 DDRFERVRVRR 206 + R RVR Sbjct: 180 SMAYFRNRVRH 190 >gi|225350936|ref|ZP_03741959.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158392|gb|EEG71634.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 364 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L + S G ++ I +DH L++ + + +D C L Sbjct: 45 IMVACSGGRDSMALAAVAAKTCA--SLG-LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101 Query: 82 IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135 + + +S+ G+ AAAREARY I + +A+ ++ AHT +DQ ETV Sbjct: 102 LDPVRVRAIDVPDSRG-IGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIG 158 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +RS A GM S + D + + RP+L RE+ ++W +DP+N Sbjct: 159 LLRSSGLDAVCGMNGSFIRDGVRF------LRPWLNMTREETTGICEDLRLAWWDDPTNG 212 Query: 196 DD 197 D Sbjct: 213 PD 214 >gi|212716399|ref|ZP_03324527.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM 16992] gi|212660652|gb|EEB21227.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM 16992] Length = 364 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L + S G ++ I +DH L++ + + +D C L Sbjct: 45 IMVACSGGRDSMALAAVAAKTCA--SLG-LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101 Query: 82 IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135 + + +S+ G+ AAAREARY I + +A+ ++ AHT +DQ ETV Sbjct: 102 LDPVRVRAIDVPDSRG-IGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIG 158 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +RS A GM S + D + + RP+L RE+ ++W +DP+N Sbjct: 159 LLRSSGLDAVCGMNGSFIRDGVRF------LRPWLNMTREETTGICEDLRLAWWDDPTNG 212 Query: 196 DD 197 D Sbjct: 213 PD 214 >gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP] gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP] Length = 529 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 38/198 (19%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++V VSGG+DS+ LL AL + ++ DH LR + ++ +V + RL Sbjct: 16 QVVVGVSGGADSVALLRALLAAGAEPLVAHF-------DHRLRPDSAEDAAWVEALAGRL 68 Query: 81 RIAH-----------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + V W L AAR RY+ ++ AK ++TAHT Sbjct: 69 GVPYVGGGADVGRVAQVRGWN-------LEDAARRLRYSFLTRTAKDAGIDTVLTAHTRR 121 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNIS 187 DQ ETV MR R A LSG+ W + RP L RE++ ++L Sbjct: 122 DQAETVLMRLLRGEAV----LSGIAPR-------WGGVERPLLGVAREELEAYLRALGQD 170 Query: 188 WCEDPSNTDDRFERVRVR 205 W ED +N D R +R Sbjct: 171 WREDSTNADTALTRAWLR 188 >gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC 6260] Length = 471 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 14/197 (7%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F ++ P + +A+SGG DSM L L++ + + + S ++ +I++DH R ++ Sbjct: 15 FGATTVKAPRRLAIALSGGVDSMCLAYLLSQYKQVYEPS---LELHSITIDHGYRSDSEI 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 E + V+ V I SV K N + AR RYA + N ++ A Sbjct: 72 EAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVA 131 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRS 179 H DDQ+ET R +++ + G+ T+ N + + RP L+ + ++ S Sbjct: 132 HNLDDQIETFIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELIS 191 Query: 180 FLLQRNISWCEDPSNTD 196 + I W ED +N D Sbjct: 192 TCIANKIQWFEDSTNQD 208 >gi|88809954|ref|ZP_01125459.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805] gi|88786144|gb|EAR17306.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805] Length = 339 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 22/197 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDVC 77 +L+A+SGG DSM LL L + R DH +KD ++ + Sbjct: 31 LLLALSGGQDSMALLGLLRDL---RKHHHWTLQLWHGDHGWHPGSACVSKDLAKWCAQEA 87 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------IMTAHTFDD 130 LR++ S T AAAR RY+ +S++A+ +N T ++TAHT D Sbjct: 88 LPLRVSRSTAE------MTSGEAAARAWRYSELSQYAQQLNQTCASSNSCTVVTAHTASD 141 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISW 188 + ET+ M+ R G+G + + + + RP L RE+ + + Sbjct: 142 RAETLLMQLSRGTDLAGLGSLRQSRPLQANASNGPRLVRPLLDFTREETAAICQDLQLPV 201 Query: 189 CEDPSNTDDRFERVRVR 205 DPSN+D R ER R+R Sbjct: 202 WHDPSNSDLRIERNRIR 218 >gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353] Length = 425 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L V S + I+ + V+H Sbjct: 6 FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--VDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I + ED SN + + R R+R Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189 >gi|329906074|ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547349|gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS LL H I+ A V H L A D +++ + C+RL Sbjct: 35 LAIAYSGGLDSSALLYLAHRHAQKNG---IRLFAFHVHHGLSADADDWLQHCAGECARLG 91 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + + +G+ AAAR +RYA + + L++TAH DDQ ETV ++ Sbjct: 92 VTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQDDQAETVLLQLL 151 Query: 141 RDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R GLSGM DT +L D L ++RP L R + + + + I+ +D SN Sbjct: 152 RGSGVA--GLSGM-DTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEGITHVDDASN 208 Query: 195 TDDRFERVRVRRFV 208 D R+ R +R V Sbjct: 209 LDTRYARNALRHEV 222 >gi|312601162|gb|ADQ90417.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyopneumoniae 168] Length = 276 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +++ LR A E VS C + + ++S+ + K + L + R RY + K Sbjct: 17 INYNLRPEAIFETLLVSKFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEF 76 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRE 175 N T ++ H DD LETV+++ ++ G+ + N+ I RPFL R +++ Sbjct: 77 NCTKLLVGHHRDDFLETVFLQKKQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQ 132 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 IR Q+ I + +D SN +++R ++R Sbjct: 133 IIR-ICQQKKIPYLDDQSNFTGKYQRNQIR 161 >gi|288904236|ref|YP_003429457.1| hypothetical protein GALLO_0013 [Streptococcus gallolyticus UCN34] gi|325977213|ref|YP_004286929.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730961|emb|CBI12505.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|325177141|emb|CBZ47185.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 421 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL H + R +I+ ++H R+ ++ E Y+ + + + Sbjct: 21 VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77 Query: 82 IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + +G+ + AAR+ RY + N T ++TAH DDQ ET++MR Sbjct: 78 IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSGM + I RPFL ++D+ I ED SN + Sbjct: 132 LR--GSRLRHLSGMQAVSSFGTGELI-RPFLTIPKKDLPE------IFHFEDDSNQSLDY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|332879744|ref|ZP_08447434.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682263|gb|EGJ55170.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG DS+ L L+S ++ FS E+ DE +V RL Sbjct: 14 VLVAISGGIDSVVLAHLLYSHGAEVILAHCNFSLRG-----EESDGDEA-FVRSFAERLG 67 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + + Q AARE RY A+ I TAH +D LET + Sbjct: 68 VQLLVERFDTHAYAKEHQLNTQLAARELRYEWFDRMAQAYACAYIATAHHANDNLETFLI 127 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL G+ + N + RP L R+ I + + +SW ED SN + Sbjct: 128 NLSR-----GSGLDGLLG--IPQQNGKLIRPLLSFSRQQIYQYAQAKQLSWREDSSNASN 180 Query: 198 RFERVRVRR 206 ++ R +R Sbjct: 181 KYVRNVIRH 189 >gi|260902380|ref|ZP_05910775.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037] gi|308110178|gb|EFO47718.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037] Length = 438 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL L + S + A+ V H L E A + Sbjct: 22 VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRS 139 I+ SV ++ + + AREARY ++ H IN L++T DDQ+ET + Sbjct: 79 ISCSVERVNLDTNSGESIESLAREARYEALARH---INRGDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +T+ + + RP L +RE I + + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAETMPFAGGTLV-RPLLNIKREQIEATAKNIGLEWVEDESNQDTRY 192 Query: 200 ERVRVRRFV 208 +R +R + Sbjct: 193 DRNFLRHRI 201 >gi|312865835|ref|ZP_07726057.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415] gi|311098710|gb|EFQ56932.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415] Length = 420 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 16/185 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVS G DSM LL+ L + D + I+ V+H R+ + E Y+ D Sbjct: 20 VLVAVSAGVDSMNLLLFLQAHQEDLA---IEIGLAHVNHKQRQQSDLEETYLRDWAEDHG 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + + +AR+ RY + + T ++TAH DDQ ET++MR R Sbjct: 77 LPFYLAHFTGNFSEK----SARDFRYNFFKKVMEKEGYTTLVTAHHADDQTETIFMRILR 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L+G+ + I RPFL R+E++ + ED SN D + R Sbjct: 133 --GSRLRHLAGIKAVQEFGPG-QIIRPFLNIRKEELPE------VFHFEDASNQSDAYLR 183 Query: 202 VRVRR 206 R+R Sbjct: 184 NRIRH 188 >gi|203288215|ref|YP_002223230.1| cell cycle protein [Borrelia recurrentis A1] gi|201085435|gb|ACH95009.1| cell cycle protein [Borrelia recurrentis A1] Length = 439 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 21/203 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68 F+ R+L+ ++VA SGG DS LL+ L L+ A H +R ++ Sbjct: 14 FYKRNLLTKEKVIVAFSGGPDSTVLLLNLKKYLN------NNIVAFYFAHYIRSKSEQDL 67 Query: 69 EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATLI 122 E+ +V C+ I + V K Q G+ AR+ RY + E +A+ + Sbjct: 68 EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENHASYV 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ ET+ MR +G L G + +N +I RP L RE+I FL Sbjct: 128 ALAHNKNDQFETLIMR-----FFQGSFLDGFVGIPV--INNFIIRPLLEVSREEIEKFLS 180 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 NI + D +N +D + R +VR Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVR 203 >gi|38234568|ref|NP_940335.1| hypothetical protein DIP2004 [Corynebacterium diphtheriae NCTC 13129] gi|38200831|emb|CAE50535.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 280 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V P I V +SGG+DS+ L+ AL A+ VDH L + Sbjct: 2 ACRVAVRT-VQPRDITVGLSGGADSLALVAAL-------CAEDYNVHALCVDHGL-QPGS 52 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 EV + +R AH+ + P L A AR ARY + H++ + ++ HT Sbjct: 53 HEVAQQAAHHARTFGAHAEIISVTVAPGN-LEANARTARYQAL--HSRNLP---VVVGHT 106 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R A +GM ++ NLW RP L RR + + I Sbjct: 107 ADDQAETLLLGALRGKA------TGM---QIHTDNLW--RPLLGVRRATTLAACTELGIE 155 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 DP N + F RV +R V Sbjct: 156 PWHDPHNANTDFLRVALRTQV 176 >gi|303234983|ref|ZP_07321607.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4] gi|302493838|gb|EFL53620.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4] Length = 451 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 13 VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69 +R + H IL+ +SGG+DS+ LL L + D F + ++H R+TA +DE Sbjct: 12 IRENLIEKHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDE 68 Query: 70 --VRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125 R +S+ + ++ V K L + R RY +E K+ + I A Sbjct: 69 NFSRKISE-ENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDLNKIAVA 127 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ+ET ++ R G G+ G+C I Y N I RP L + +I ++L + + Sbjct: 128 HHLDDQVETFFLHLFR-----GSGIDGLC-GIQYQ-NKNIIRPLLDVSKSEILNYLDEND 180 Query: 186 ISWCEDPSNTDDRFERVRVR 205 I + D +N +R ++R Sbjct: 181 IDYVTDETNFVADVQRNKIR 200 >gi|162448219|ref|YP_001621351.1| PP-loop superfamily ATPase [Acholeplasma laidlawii PG-8A] gi|161986326|gb|ABX81975.1| ATPase of the PP-loop superfamily [Acholeplasma laidlawii PG-8A] Length = 406 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%) Query: 23 LVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++AVSGG DSM L L H+ + F + +H R + + V +C+ Sbjct: 14 VLAVSGGVDSMVLFDLFVKHN---------LNFVVVHFNHQKRAESILDHELVESMCTLH 64 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + K +R ARY + A+ + I+TAH DD ET+ M+ Sbjct: 65 HIPYHYIKLK--IKNGNFQEVSRNARYKNLEFIAEQYHTPYIVTAHHLDDLAETIMMKLI 122 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G + M + D +++ +P L +E+I + I + ED +N +D + Sbjct: 123 R--GSNLLGYAAMQEVTHIDKFIYL-KPLLNYSKEEISLYQQTHQIKFYEDHTNLEDTYS 179 Query: 201 RVRVRRFV 208 R RVR + Sbjct: 180 RNRVRHHL 187 >gi|291548189|emb|CBL21297.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Ruminococcus sp. SR1/5] Length = 318 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 30/222 (13%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I VR ++R L ++ VSGG+DS+ +L L S+ + F + V H + Sbjct: 2 ITRVRKYIRDNRMLKAEDMVVAGVSGGADSIAMLHILKSLQKEIGFS---MEVVHVHHGI 58 Query: 63 R--ETAKDEVRYVSDVCSR----LRIAHSVV-----SWKNSKPQTGLMA-----AAREAR 106 R E +DE ++V +C R H V WK + +TG + + R Sbjct: 59 RGQEADRDE-QFVEKICRDWGIPFRSRHYPVPELSGKWKLGEEETGRIVRKQAFQEEKKR 117 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 E +K + AH +D ET+ + +G G+ G+ + ++ I Sbjct: 118 LGFSGEQSKKNGQFRVALAHNRNDLAETML-----HHLARGTGIRGLSG--IQAVSGEII 170 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 RP L R++I ++L +R IS+ D SN D + R R+R + Sbjct: 171 RPVLCLERKEIVNYLKERGISYITDSSNLSDNYTRNRIRNHI 212 >gi|320540048|ref|ZP_08039704.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str. Tucson] gi|320029897|gb|EFW11920.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str. Tucson] Length = 442 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 31/282 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL L + + + + A+ V H L A + C+ R Sbjct: 20 VLVAFSGGLDSTVLLHLLAQL--RQQHPEFQLRAVHVHHGLSAFADTWADHCGRQCAAWR 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-----IMTAHTFDDQLETVY 136 + +V + Q A EA NATL ++TA DDQ ET Sbjct: 78 VPLTV-----QRVQVDARAGGIEAAARTAR--YAAFNATLKADEILITAQHLDDQSETFL 130 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R G+ C + + L RP L C R + ++ Q +SW +D SN + Sbjct: 131 LALKRGSGPAGLSAMAACGRLADHVLL---RPLLGCSRLRLEAYAQQHQLSWIDDDSNQN 187 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIA-- 251 RF+ R F+R L L L+ F + + A L+ + L +R+++A Sbjct: 188 PRFD----RNFLRLQVLPLLNLRWPHFTSAVARSASLCAEQEQLLDELLADQLRTLLAED 243 Query: 252 ---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + +++L F LLR I ++LP ++ + Sbjct: 244 NSLVIEELLGCSPACRFALLR--RWIARHDVTLPSREQLQHL 283 >gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis] Length = 556 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 22 ILVAVSGGSDSMGL---------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + VA+SGG DS+ L + + DR + A+ VDH LR + +E Sbjct: 22 VAVALSGGPDSLALASMTVWWQGFVRNQVLRRDRLRSQQTPLALIVDHKLRPESTEEAHA 81 Query: 73 VSDVCSRLRIAHSVVS--WKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V+ L + V++ W + Q M AAREARYA + + T ++ AH D Sbjct: 82 VAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAAREARYAALLRACGEMGRTHLLLAHHAD 141 Query: 130 DQLETVYMRSQRDYAEKGMGLSGM---CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DQ ET +R +A +GL+ M + + + RP L + ++ ++ + + Sbjct: 142 DQAETFLLRLL--HASGVVGLACMPAVAEKRTEFGRIKVVRPLLGFHKAELEAYCQRSRL 199 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI 211 + DP+N++ + R R+R +R + Sbjct: 200 PYIVDPTNSELSYHRNRIRHVLRQM 224 >gi|156975489|ref|YP_001446396.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116] gi|171769914|sp|A7MXZ8|TILS_VIBHB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|156527083|gb|ABU72169.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116] Length = 448 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%) Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 AREARY +++H ++ L++T DDQ+ET + +R KG LS M +++ + Sbjct: 110 AREARYQALAKHIQS--GDLLLTGQHADDQVETFLLALKRGSGPKG--LSSMAESMPFAG 165 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + RP L +RE I + ++ + W ED SN D R++R Sbjct: 166 GTLV-RPLLAIKREQIEAVAKEQGLDWVEDESNQDTRYDR 204 >gi|225620287|ref|YP_002721544.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1] gi|225215106|gb|ACN83840.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1] Length = 450 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81 VA SGG DS LL + + + SF I I V++ LR ++ DE+ + D+ + Sbjct: 23 VAYSGGIDSQVLLNIAYRLKDELSFDLI---IIHVNYNLRGEDSTNDEL-FARDMAKKYN 78 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139 I V K NS + AR RY E H K I L++ AH DD ET+ R Sbjct: 79 IEIYVKEIKPNSYNGKNIQLEARNDRYNFFEELHNKKIYDYLLI-AHNKDDLAETIIYRM 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG G + L D +I RP L R+DI + N+ ED SN + + Sbjct: 138 I-----KGAGTNVYKS--LRDKKGYILRPILNFYRKDIEKYAKNNNLEHREDVSNKKNYY 190 Query: 200 ERVRVRRFV 208 R ++R + Sbjct: 191 SRNKIRNLI 199 >gi|21325470|dbj|BAC00092.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Corynebacterium glutamicum ATCC 13032] Length = 297 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 93/199 (46%), Gaps = 23/199 (11%) Query: 13 VRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 +R V P H+ + +SGG DS+ L+ A VL+++S + +AI +DH L +T E Sbjct: 3 LRKAVRPYLKEHVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHNL-QTGSAE 54 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + + +R A ++V P G+ AAAREARYA ++ I AHT D Sbjct: 55 VTHNAAAMARHMGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI-----WVAHTMD 109 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET + R +GM D L I RP L RR ++ + Sbjct: 110 DQAETYLLGGLRGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGACVELGLKPW 162 Query: 190 EDPSNTDDRFERVRVRRFV 208 DP N DD F RV +R V Sbjct: 163 HDPQNFDDAFRRVAIRNQV 181 >gi|329298696|ref|ZP_08256032.1| tRNA(Ile)-lysidine synthetase [Plautia stali symbiont] Length = 432 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A SGG DS LL L V R +++ + V H A + C + Sbjct: 14 ARCVLAFSGGLDSSVLLYQL--VSWQRQQPQLRVRTLHVHHGFSPNADRWAAHCQQQCQQ 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V+ + G+ AAAR ARY + H + ++TA DDQ ET+ + Sbjct: 72 WHIPCEVLRVQVDARAGGIEAAARTARYQALFTHLQP--GEYLLTAQHLDDQAETLLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G L+ M + + W RP L R+ + ++ + + W +D SN D R+ Sbjct: 130 KRGSGPAG--LAAMPQQRQVNGH-WHLRPLLNLSRQQLEAYAVGHQLDWIDDESNADRRY 186 Query: 200 ERVRVRRFV 208 +R +R+ V Sbjct: 187 DRNFLRQDV 195 >gi|332365105|gb|EGJ42870.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK355] Length = 425 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 24/206 (11%) Query: 2 FLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 FL ++ ++F H +LVAVSGG DSM LL L + S + I+ + V+ Sbjct: 6 FLKKMQEKKYF------QGHRKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVN 56 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H R + E + + + +L + S+ +T AAR+ RY + + + Sbjct: 57 HKQRPESDQEEKALVKIAEQLGVKIFTSSFSGKFSET----AARQFRYDFFGKVMQEEHY 112 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 113 TALVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDFPE 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 I ED SN + + R R+R Sbjct: 170 ------IQHFEDSSNFQNDYLRNRIR 189 >gi|317060743|ref|ZP_07925228.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. D12] gi|313686419|gb|EFS23254.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. D12] Length = 446 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVA SGG DS+ L+ L + SF + + + H +R E A+++ + D + Sbjct: 24 ILVAFSGGPDSVFLVEMLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLFCLDYAKKK 80 Query: 81 RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V S+ + Q+ L A R RY + K I TAH DD LET Sbjct: 81 NLEIIARKMDVPSYAKKEGQS-LEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETF 139 Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R R + +G+ G+S D I RP + +I S+L + I++C+D + Sbjct: 140 FFRLLRGSSMEGLAGISRKQADKI---------RPLRDFEKAEILSYLERHQIAYCKDKT 190 Query: 194 NTDDRFERVRVR 205 N + + R R+R Sbjct: 191 NEETEYSRNRIR 202 >gi|153835638|ref|ZP_01988305.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi HY01] gi|148867745|gb|EDL67002.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi HY01] Length = 448 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 23/197 (11%) Query: 22 ILVAVSGGSDSMGLLI---------ALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVR 71 I++A SGG DS LL ++ + L+D SF K A+ V H L A + Sbjct: 22 IVLAFSGGVDSRLLLELLSRYQQAYSIDNQLTDSHSF---KCHAVYVHHGLSSNADEWAD 78 Query: 72 YVSDVCSRLRIAHSV--VSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I +SV VS NS L+A REARY +++H ++ L++T Sbjct: 79 KCLVWAEQAGITYSVERVSLDTNSGESIELLA--REARYQALAKHIQS--GDLLLTGQHA 134 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ+ET + +R KG LS M +++ + + + RP L +RE I + ++ + W Sbjct: 135 DDQVETFLLALKRGSGPKG--LSSMAESMPFAGGILV-RPLLAIKREQIEAVAREQKLDW 191 Query: 189 CEDPSNTDDRFERVRVR 205 ED SN D R++R +R Sbjct: 192 VEDESNQDIRYDRNFLR 208 >gi|256384073|gb|ACU78643.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384905|gb|ACU79474.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455764|gb|ADH21999.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 401 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 17/188 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS+ LL + ++ + V++ R + ++ V+++C + + Sbjct: 13 LIAVSGGPDSVFLLCNVVKLVDPNNL-----VVCHVNYNFRSDSNNDQMIVTNLCKQFNL 67 Query: 83 AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ S + + AR RY + A ++ AH F+D +ET ++ Q Sbjct: 68 KLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNFNDLIETYLLQLQ 127 Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ GL S D ++Y RP L ++ I ++L IS+ D +N+D Sbjct: 128 RNNLVDYYGLKPVSHYKDLVVY-------RPLLDIKKSQILNYLNTNKISYAIDSTNSDT 180 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 181 KYQRNKIR 188 >gi|56808856|ref|ZP_00366567.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus pyogenes M49 591] Length = 428 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ I+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--TIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|300114833|ref|YP_003761408.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113] gi|299540770|gb|ADJ29087.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113] Length = 442 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 10/184 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL +L L + G + SAI ++H L + + + + C+ L + Sbjct: 23 VAYSGGLDSQVLLYSLVQ-LGPKLPGSL-ISAIHINHGLHPRSGEWSLHCRESCAALGVG 80 Query: 84 HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V N P+ G AAAREARY + ++ ++TA DDQ+ET+ ++ R Sbjct: 81 YEEVK-VNGHPRKGESPEAAAREARYGAL--RSRIARGECLLTAQHQDDQVETLLLQLLR 137 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ L RP L R +++ + Q + W EDPSN D F+R Sbjct: 138 GGGPAGLAAMAKAAPFGQGRLL---RPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDR 194 Query: 202 VRVR 205 +R Sbjct: 195 NYLR 198 >gi|152991221|ref|YP_001356943.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2] gi|151423082|dbj|BAF70586.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2] Length = 329 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L +L +R+ I F VD+ LR +KDEV Y ++ + Sbjct: 15 LLAFSAGIDSTALFF----LLLERN---IDFDIAIVDYGLRSQSKDEVAYAVELAKKYTK 67 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 P + AR RY E + ++TAH +DQLE M+ Sbjct: 68 KIYTKQVTIKPP--SVEEKARNVRYQFFDEIIQQEGYHNLLTAHQLNDQLEWFLMQL--- 122 Query: 143 YAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G +G+C+ + D+ I RP L ++ +++S+L + I + D SN D Sbjct: 123 ----GKG-AGLCELVGMDIVTNRKGYKIVRPLLFVQKSELKSYLETKKIPYYIDESNLQD 177 Query: 198 RFERVRVR 205 + R +R Sbjct: 178 SYFRNYIR 185 >gi|306832496|ref|ZP_07465648.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425396|gb|EFM28516.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 421 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL H + R +I+ ++H R+ ++ E Y+ + + + Sbjct: 21 VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77 Query: 82 IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + +G+ + AAR+ RY + N T ++TAH DDQ ET++MR Sbjct: 78 IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSGM + I RPFL ++D+ I ED SN + Sbjct: 132 LR--GSRLRHLSGMQAVSSFGTGELI-RPFLTIPKKDLPE------IFHFEDDSNQSLDY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|87301619|ref|ZP_01084459.1| possible MesJ-like protein [Synechococcus sp. WH 5701] gi|87283836|gb|EAQ75790.1| possible MesJ-like protein [Synechococcus sp. WH 5701] Length = 365 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 31/221 (14%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DSM L L L R + +H R+ A D+ ++ L + Sbjct: 34 AISGGQDSMALTALL---LELRRLHGWELHLWHGNHGWRKEAADQAGELAAWAGGLGLPI 90 Query: 85 SVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + + + G A R RY +++ A ++ T ++T HT D+ ET+ R Sbjct: 91 RVENAPAAPASSASGREEAGRRWRYERLNQQALSLGCTRVVTGHTGSDRAETLLFNLARG 150 Query: 143 YAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +G+ LSG + + RP L R + SF Q+ + DP NT Sbjct: 151 CGLRGLSSLRARRPLSGRIELV---------RPLLGFSRAETASFCKQQQLPLWLDPGNT 201 Query: 196 DDRFERVRVRRFVRDI--DLH--------ALYLKMKKFQDL 226 D RF R R+R+ V + +LH AL +++ Q+L Sbjct: 202 DPRFSRNRLRQEVLPVLEELHPGAWRRLGALAERLEGTQNL 242 >gi|86146872|ref|ZP_01065191.1| Cell cycle protein MesJ [Vibrio sp. MED222] gi|85835324|gb|EAQ53463.1| Cell cycle protein MesJ [Vibrio sp. MED222] Length = 448 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 13/200 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F +S + P ++VA SGG DS LL +A S I+ A+ V H L + A Sbjct: 12 FQQSDLKPRRLVVAFSGGVDSRVLLELAAKYAKSHH----IECCAVHVHHGLSKNADLWA 67 Query: 71 RYVSDVC--SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C S + +A VS + ++ + AR+ARY + +H +++T Sbjct: 68 EQCQTWCDASSVPLAIERVSLDINSGES-VEKLARDARYDSLQKHLSF--GDVLITGQHI 124 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET + +R KG LS M + + +I RP L R DI + ++W Sbjct: 125 DDQLETFLLALKRGSGPKG--LSSMAKVMSFG-EAFIVRPLLSVTRLDIEASAHDMGLTW 181 Query: 189 CEDPSNTDDRFERVRVRRFV 208 ED SN D RF+R +R V Sbjct: 182 VEDESNQDLRFDRNFIRHQV 201 >gi|301162414|emb|CBW21959.1| putative ATP-binding PP-loop protein [Bacteroides fragilis 638R] Length = 435 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LV +SGG+DS+ LL L S+ F +E+ +DE +V +C Sbjct: 22 VLVTLSGGTDSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + +K + AARE RY + A++I TAH DD +ETV + Sbjct: 76 VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|169824693|ref|YP_001692304.1| cell cycle protein [Finegoldia magna ATCC 29328] gi|167831498|dbj|BAG08414.1| cell cycle protein [Finegoldia magna ATCC 29328] Length = 451 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 13 VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69 +R + H IL+ +SGG+DS+ LL L + D F + ++H R+TA +DE Sbjct: 12 IRENLIEKHDKILIGLSGGADSVFLLNILIKLQRDLDF---EIYTCHINHSYRDTALRDE 68 Query: 70 --VRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125 R +S+ + ++ V K L + R RY +E K+ + I A Sbjct: 69 NFSRKISE-ENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDFNKIAVA 127 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ+ET ++ R G G+ G+C I Y N I RP L + +I ++L + + Sbjct: 128 HHLDDQVETFFLHLFR-----GSGIDGLC-GIQYQ-NKNIIRPLLDVSKSEILNYLDEND 180 Query: 186 ISWCEDPSNTDDRFERVRVR 205 I + D +N +R ++R Sbjct: 181 IDYVTDETNFVADVQRNKIR 200 >gi|325479551|gb|EGC82647.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii ACS-065-V-Col13] Length = 454 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKI--------KFSAISVDHCLRETA-KDEVRY 72 I+V SGG DS L+ AL+ + ++ F I + AI + ++ETA K +R+ Sbjct: 23 IIVGASGGPDSQFLVYALNELKNELKFDIILAHFNHLHRKEAIEDEMLVKETAEKLSLRF 82 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ S + A + + A R RY K N I AHT DDQ Sbjct: 83 ITKSQSMDQFAKDM--------KISPEDAGRRLRYEFFRSIEKDKNPK-IAVAHTMDDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R G G++G+ + Y N I RP L +++D+ +L I++ D Sbjct: 134 ETVLMRIIR-----GTGVNGLV-AMTYK-NDDIIRPILDIKKQDLLDYLATNGINYHIDK 186 Query: 193 SNTDDRFERVRVR 205 +N + + R ++R Sbjct: 187 TNNETDYTRNKIR 199 >gi|209558597|ref|YP_002285069.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131] gi|209539798|gb|ACI60374.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131] Length = 428 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+L+AVSGG DSM LL L+ + D+ I+ V+H R + E Y+ + Sbjct: 22 HVLIAVSGGVDSMNLLHFLY-LFQDKL--TIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78 Query: 81 RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V +++ G+ + AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 79 DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVR 205 F R RVR Sbjct: 184 FLRNRVR 190 >gi|146329382|ref|YP_001209278.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A] gi|146232852|gb|ABQ13830.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A] Length = 415 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 24/231 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F ++ P L+A SGG DS+ LL H++ ++ + ++H + A Sbjct: 10 FQWQTQTNPTAYLLACSGGRDSIALL---HALYQQKTQLSAPLEIVYINHGWHQDAAKWG 66 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 V+ + + VS + K A AR+ARY ++ +N L +TAH DD Sbjct: 67 ELVATRAAAYGFSFRSVS-LHLKATKNAEAVARKARYQAFAQ-LLPVNGVL-LTAHHQDD 123 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISRPFLRCRREDIRSFLLQRNI 186 Q ET+ + R G GL G+ L W RP+L R +I +L + + Sbjct: 124 QAETLLLNLCR-----GSGLDGLSAMPLRRSFAAGEHW--RPWLLHARAEIEDYLKSQQL 176 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ +D SNTD R++R +R V L L +F +R ++ A L Sbjct: 177 TFVDDSSNTDTRYQRNWLRHQV-------LPLLETRFPAIRAQLAQTSAQL 220 >gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV] gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV] Length = 425 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL L+ R +I+ V+H +RE + E + + +L Sbjct: 22 VLLAISGGLDSMTLLDWLYKY---RKKLEIEIYLAHVNHGVREESDFEEEKLKKIAKKLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S+ + S P + AR+ RYA + N T ++TAH DDQ ET++MR R Sbjct: 79 V--SIFTSSFSGPFSE--QKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFMRILR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +SGM + + N + RP L ++ + I ED +N ++ + R Sbjct: 135 --GSRLFHISGMKEKQKF-ANGELIRPLLSFQKSNFPP------IFHFEDWTNQENHYLR 185 Query: 202 VRVR 205 R+R Sbjct: 186 NRIR 189 >gi|226939785|ref|YP_002794858.1| MesJ [Laribacter hongkongensis HLHK9] gi|226714711|gb|ACO73849.1| MesJ [Laribacter hongkongensis HLHK9] Length = 447 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL AL + I A+ V H L A D + SD+C L + Sbjct: 38 VGLSGGVDSVVLLQALSRCATGHG---IALRAVHVHHGLSPHADDWAGFCSDLCRELSVP 94 Query: 84 HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + VS S Q+ A R A + ++ ++ AH DD ETV + + R Sbjct: 95 LRIERVSVVRSGGQSLEAEARRARYAAYRNGGSR-----IVALAHHADDLAETVLLAALR 149 Query: 142 DYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G L+ M ++D L +W RP L RR ++ S Q+ SW D SN D R+ Sbjct: 150 GGGAHG--LAAMPAWRVHDGLTVW--RPLLGWRRNELESMARQQGWSWITDESNADPRYR 205 Query: 201 RVRVRRFV 208 R +R V Sbjct: 206 RNALRHAV 213 >gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1] gi|61216595|sp|Q7UNE1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1] Length = 397 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHC---LR--ETAKDE 69 LV SGG+DS+ L+ L + ++ S G + + V HC LR E+ DE Sbjct: 40 LVGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADE 99 Query: 70 VRYVSDVCSRLR---IAHSVVSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIM 123 +V +C +L+ + H V NS +G ++ R + R AK + Sbjct: 100 A-FVRQICDQLQLPLVIHHVPPLNNSA-TSGPVSDERTLRQIRRDFFERAAKQHGCRYVA 157 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH+ DDQ ET+ R +GL+G+ + D ++ + RP L+ RR+ +R L + Sbjct: 158 VAHSADDQAETMLHHFIRGTGP--LGLAGIAEASELDTDIVVRRPLLQVRRDTLRDGLRE 215 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 W ED SN + R +R V Sbjct: 216 IGQPWREDASNRHTIYTRNWIRHDV 240 >gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163] gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163] Length = 299 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 5/189 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS L L S+ + VDH LR + +E + + D + Sbjct: 24 LLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRADSANETKLIDDQFANRG 80 Query: 82 IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W K P +G+ AAR+ RY A + A I+ A DDQ ET ++ Sbjct: 81 LCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKII 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRF 199 R + + + D + + RP L + +I + + ++ W ED +N D D Sbjct: 141 RGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDYT 200 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 201 SRNQIRNVV 209 >gi|188990960|ref|YP_001902970.1| Putative cell cycle protein mesJ homolog. [Xanthomonas campestris pv. campestris str. B100] gi|167732720|emb|CAP50914.1| Putative cell cycle protein mesJ homolog [Xanthomonas campestris pv. campestris] Length = 432 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 9/191 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA +LVA SGG DS + LH++ + + + A+ V H L A + C+ Sbjct: 12 PAPVLVAYSGGMDSA---VLLHALAATDGYREAGLRAVHVHHGLHADADAWALHCQQQCA 68 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L IA VV + ++ +G A + A + AH DDQ ET +R Sbjct: 69 ALGIALQVVRVQVAR-DSGSGLEAAARAARHAAFAATLAAGEWLALAHHRDDQAETFLLR 127 Query: 139 SQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A GL+ M + LW RP L R D+ ++ + W +DPSNTD Sbjct: 128 ALR--ASGPDGLAAMRPQRPFGPGTLW--RPLLGHARADLAAYAQAHAVRWIDDPSNTDP 183 Query: 198 RFERVRVRRFV 208 + +R +R V Sbjct: 184 QHDRNFLRTQV 194 >gi|289548617|ref|YP_003473605.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484] gi|289182234|gb|ADC89478.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484] Length = 298 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 21/216 (9%) Query: 3 LSPIESVRFFVRSL-VYP--AHILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISV 58 +S + V F R L + P + +LVA SGG+DS+ + ++L + F G + + V Sbjct: 1 MSLLRKVVFLQRKLQLIPPGSSLLVAFSGGADSV---ALVLALLELKGFIGWKRILLMHV 57 Query: 59 DHCLR--ETAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 +H +R E +DE+ + + R L + + K + L + ARE RY L+ E Sbjct: 58 NHMIRGGEAERDEL-FCREFAQRHQLPLLVERIDIPSIAEKKKENLESIAREERYRLLRE 116 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 LI+TAH +D +ETV + + +G G G+ + + + RP Sbjct: 117 VKDREGLDLIVTAHHLNDLVETVLL-----WLVRGCGTEGLMGFDEREGD--VVRPLFLV 169 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 ++E+I +F+ + SW ED +N D + R R+R V Sbjct: 170 KKEEIVAFVKGKGESWVEDSTNMDVGYARNRIRHRV 205 >gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424] gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424] Length = 446 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 10/186 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS ++ H +++ + ++H LR+ + +E +V S I Sbjct: 23 LALSGGVDS---IVLFHLLVTKYRHTYKELVVFHINHGLRKESYEEAEFVEKFVSNYDIR 79 Query: 84 HSVVSWK-NSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + NS + ++ AR+ RY +E A N T I+TAH +DQ+E + MR Sbjct: 80 FYKKELEMNSLARDKHISEEMLARKLRYKAFNEMAAKENITKILTAHHKNDQVENILMRL 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + M + D NL I RP L +E + + + N+ + D SN D + Sbjct: 140 ---LTGRSMDYNLAIDNKGRHGNLTIYRPLLNVLKETLEQYAQENNLKYYTDESNFDTDY 196 Query: 200 ERVRVR 205 R +R Sbjct: 197 TRNNIR 202 >gi|262374859|ref|ZP_06068093.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145] gi|262309872|gb|EEY91001.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145] Length = 458 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 21/215 (9%) Query: 12 FVRSLV-YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F++ L +PA L+ SGG DSM LL + + S+ K AI VDH L+ + Sbjct: 20 FLKQLQDFPAETKFLIGCSGGVDSMLLLHLMFFLCSE------KIRAIYVDHQLQSISSA 73 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +V C +L I ++ N L AR +RY +H + +++ AH Sbjct: 74 WGTFVQQQCRQLNIP-CIIQPVNVAS-GNLEQQARNSRYQAYLQHLQA--DEILVLAHHQ 129 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNI 186 DQ ET+ +R G G+ G+ D+ NL I RP L RE I + N+ Sbjct: 130 QDQAETLMLR-----LLSGAGIDGLAAMKQIDIRENLTIWRPLLNISREQICQWASDLNV 184 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 EDP+N D ++R R+ + + L Y KM+ Sbjct: 185 QNIEDPTNADTYYDRAWARQTLWPV-LSERYPKMQ 218 >gi|253563316|ref|ZP_04840773.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5] gi|251947092|gb|EES87374.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5] Length = 435 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LV +SGG+DS+ LL L S+ F +E+ +DE +V +C Sbjct: 22 VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + +K + AARE RY + A++I TAH DD +ETV + Sbjct: 76 VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|228473589|ref|ZP_04058341.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624] gi|228274961|gb|EEK13771.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624] Length = 414 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 22/211 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRI 82 +A+SGG DS+ L LH + I F + LR E ++ + +V + L + Sbjct: 1 MAISGGVDSVVLAHLLHEL-------GISFLMAHCNFQLRGEESEGDQHFVETLAKELSV 53 Query: 83 AHSVVSW--KNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + K GL AAR RY + I+TAH +D ET + Sbjct: 54 PIAIKRFETKTYGKAHGLNTQLAARVLRYEWFEALRQEQGYDYILTAHQANDSWETFLIN 113 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + R G GL G+ + N + RP L RE+I +F +R I W ED SN D Sbjct: 114 TSR-----GSGLKGLLG--IPAENAHVLRPLLPFSREEILAFAQERGICWREDSSNGSDA 166 Query: 199 FERVRVRRFVRDI--DLHALYLK-MKKFQDL 226 + R ++R + I ++H + K +K Q+L Sbjct: 167 YTRNKIRHHLSPILKEIHPNFFKNFEKTQNL 197 >gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386] gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386] Length = 442 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 14/191 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L H + R ++ + V+H LRE A +++++V + + Sbjct: 26 VLIAFSGGPDSVFLF---HCINFFRESLGLELELVYVNHKLREDADEDIKFVKEFAEKYE 82 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + V + + A RE RY + + K N I T H DD +ET Sbjct: 83 VRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKIATGHNLDDNIETFIF 142 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G L+G+ + I RP L R++ I L + + D +N + Sbjct: 143 RLLR-----GTALNGLKGIPVK--RGAIIRPILEFRKDYILEVLDGADEEYRLDSTNFET 195 Query: 198 RFERVRVRRFV 208 ++ R ++R + Sbjct: 196 KYTRNKIRNLI 206 >gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818] Length = 666 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 14/179 (7%) Query: 43 LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA 100 L + G + A+ VDH LR + +E V+ +A V ++W+ + T MA Sbjct: 6 LVKHALGADRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAWRVNDKHTQEMA 65 Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160 R RY + A T IMT H DD ET+ +R R + G+ + Y Sbjct: 66 --RHKRYHALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMREVQPLYYA 123 Query: 161 LN---LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 L ++RP L + ++ + I W EDP+N D ++ R+ HAL Sbjct: 124 HAFEPLLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRD-------ATKYTRNSIRHAL 175 >gi|332298400|ref|YP_004440322.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168] gi|332181503|gb|AEE17191.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168] Length = 489 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 34/213 (15%) Query: 16 LVYPAHILV-AVSGGSDSMGLLIA-------LHSVL---SDRSFGKIKFSAISVDHCLR- 63 L P I+ VSGG+DSM LL A L+S + +F I+VDH +R Sbjct: 31 LFRPGSIVAFGVSGGADSMALLCASVRIRESLYSASCTPGENDTASARFRVITVDHNIRP 90 Query: 64 -ETAKDEVRYVSDVCSRL-----RIA---HSVVSWKNSKPQTGLMAAAREARYALISEHA 114 E + + +V + C L R+A V + + GL AAR RY + A Sbjct: 91 PEESGGDAAFVRNFCETLPSTDCRVAVFERGAVERLARERRRGLEEAARSLRYGIFESDA 150 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRC 172 + A +I AH +DQLET+ +R + + SG+ C RP L Sbjct: 151 RQTGAAVICLAHNRNDQLETLLLR----FLQGSSAASGIPRCREPFV-------RPLLDI 199 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R DI +L + D +N D+R+ R + R Sbjct: 200 GRADILRYLEILAVPHRTDATNFDNRYLRNKCR 232 >gi|265762798|ref|ZP_06091366.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16] gi|263255406|gb|EEZ26752.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16] Length = 435 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LV +SGG+DS+ LL L S+ F +E+ +DE +V +C Sbjct: 22 VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + +K + AARE RY + A++I TAH DD +ETV + Sbjct: 76 VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|134298004|ref|YP_001111500.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1] gi|134050704|gb|ABO48675.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1] Length = 472 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 18/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LV VSGG DS+ LL L+ + + I ++H R E A ++ +V ++CS Sbjct: 23 VLVGVSGGLDSVVLLHILNCLKEELG---ISLHVAHLNHMFRGEEATEDALFVQELCSNW 79 Query: 81 RIAHSVVSWKNSKPQ----TGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +V K + P GL + AARE RY + + I AH +DQ E+ Sbjct: 80 GIPCTV--EKRNVPAYAQARGLSSELAAREVRYQFYDDVREETGGHKIALAHHANDQAES 137 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M R G GL G+ NL+I RP L+ R +I + ++ +++ D SN Sbjct: 138 VLMNMLR-----GSGLKGISGIAPVRDNLYI-RPLLKLLRSEIEQYGQRKGLTFRIDSSN 191 Query: 195 TDDRFERVRVR 205 + + R ++R Sbjct: 192 LEVVYRRNKLR 202 >gi|61216540|sp|Q6NF90|TILS_CORDI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 292 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V P I V +SGG+DS+ L+ AL A+ VDH L + Sbjct: 14 ACRVAVRT-VQPRDITVGLSGGADSLALVAAL-------CAEDYNVHALCVDHGL-QPGS 64 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 EV + +R AH+ + P L A AR ARY + H++ + ++ HT Sbjct: 65 HEVAQQAAHHARTFGAHAEIISVTVAPGN-LEANARTARYQAL--HSRNLP---VVVGHT 118 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R A +GM ++ NLW RP L RR + + I Sbjct: 119 ADDQAETLLLGALRGKA------TGM---QIHTDNLW--RPLLGVRRATTLAACTELGIE 167 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 DP N + F RV +R V Sbjct: 168 PWHDPHNANTDFLRVALRTQV 188 >gi|60680868|ref|YP_211012.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC 9343] gi|60492302|emb|CAH07067.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC 9343] Length = 435 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +LV +SGG+DS+ LL L S+ F +E+ +DE +V +C Sbjct: 22 VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L I H + +K + AARE RY + A++I TAH DD +ETV + Sbjct: 76 VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L RE+I ++L + + D +N D Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYTRNKIR 196 >gi|260943125|ref|XP_002615861.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720] gi|238851151|gb|EEQ40615.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720] Length = 463 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 12/199 (6%) Query: 19 PAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P +LVA+SGG DSM L L+ + L D K++ +++DH R+ + E V + Sbjct: 20 PGKLLVALSGGVDSMCLTHLLLQYKKLYD---PKLEIHTMTIDHGYRKMSSLEAHEVGRI 76 Query: 77 CSRLRIAHSV--VSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 H + +S+ +N T AR RY + ++ AH +D++E Sbjct: 77 VQSWGAHHYIHRLSYDRNPSSITNFEEVARTMRYNAFERQCDELGIQALLLAHNLNDRIE 136 Query: 134 TVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 T R Q + G+G + M + + + RP L+ ++ +R ++ + W Sbjct: 137 TFLQRLQMNSTLYGLGGLKPRATMPISSKSPQQISVFRPLLQFDKQSLRETCVKSGVLWF 196 Query: 190 EDPSNTDDRFERVRVRRFV 208 ED +N D + + R++ Sbjct: 197 EDHTNADLHLTKRNLFRYM 215 >gi|293364526|ref|ZP_06611251.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|307702816|ref|ZP_07639766.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|291317034|gb|EFE57462.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|307623672|gb|EFO02659.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] Length = 425 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F+R + H +++A+SGG DSM L L + ++ I+ V+H R + Sbjct: 10 FLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQNELG---IELILAHVNHKQRSESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ A ARE RY + K + AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D ++ I RP L+ ++D I Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-DIEIIRPLLQFHKKDFSP------I 170 Query: 187 SWCEDPSNTDDRFERVRVR 205 ED +N ++ + R RVR Sbjct: 171 FHFEDQTNQENTYFRNRVR 189 >gi|304415319|ref|ZP_07396004.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella insecticola LSR1] gi|304282837|gb|EFL91315.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella insecticola LSR1] Length = 424 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 AI + H + A D V + C + ++ +V + + + G+ AAAR ARY S H Sbjct: 31 AIHIHHGINPQANDWVEHCQYQCQQWQVPLEIVPVQLNTRKNGIEAAARAARYHAFSTH- 89 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +++TA DDQ ET + +R GLS M + + + + RP L C R Sbjct: 90 -LTDKEVLLTAQHQDDQCETFLLALKR--GSGPTGLSAMASKMAFAQSQ-LLRPLLSCSR 145 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +++ + + I W ED SN D RF+R +R+ + Sbjct: 146 QNLMDYAQRHQIQWVEDESNQDRRFDRNFLRQEI 179 >gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405] gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360] gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20] gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405] gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360] gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20] gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313] Length = 470 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I+V VSGG DS+ LL H + R + A+ V+H LR E + DE +V ++C + Sbjct: 21 IVVGVSGGPDSVCLL---HILCKLRESMDLGLVAVHVNHMLRGDEASGDEA-FVENLCKK 76 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + + + + L R RY L E A A I AH +DQ ETV Sbjct: 77 LNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVADNFGAQRIAVAHNKNDQAETV 136 Query: 136 YMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 M R G GL G+ D I I RP L R +I ++ N++ D + Sbjct: 137 LMNIIR-----GTGLDGLRGMDYIRG----RIIRPLLGVERTEIENYCRIHNLNPRIDST 187 Query: 194 NTDDRFERVRVR 205 N ++ + R ++R Sbjct: 188 NLENIYTRNKIR 199 >gi|325269878|ref|ZP_08136488.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella multiformis DSM 16608] gi|324987851|gb|EGC19824.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella multiformis DSM 16608] Length = 456 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 43/267 (16%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL+ L + G + A+ + LR E+ DE R+ ++C R Sbjct: 22 LVALSGGADSVALLLTL------KELG-YRVEAVHCNFQLRGEESLHDE-RFCQELCRRE 73 Query: 81 RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + T + AAR+ RY + +T+ A + H +D +ET+ Sbjct: 74 NIPLHKVHFDTRSYATLHKVSIEMAARDLRYHYFFQLKETLGADAVCVGHHEEDSVETIL 133 Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M R KG MG+ D I+ RP L R +I ++L RN + D +N Sbjct: 134 MNLVRGTGLKGLMGIRPKKDGIV--------RPLLCVSRHEIEAYLHARNEPFVTDSTNL 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 R ++R + + + ++ VN A+ + H+ ++ I Q+ Sbjct: 186 VADVVRNKIRLTI-----------LPRLAEINPSVNEAIL-----HTAEHLSNVDRIVQN 229 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLP 282 +L +TL ++ V + I G+ +P Sbjct: 230 VLQ--NTLREAIIPVDSTI--GEEDIP 252 >gi|67924269|ref|ZP_00517706.1| PP-loop [Crocosphaera watsonii WH 8501] gi|67853884|gb|EAM49206.1| PP-loop [Crocosphaera watsonii WH 8501] Length = 322 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 13/193 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73 L + +++L+AVSGG DS+ LL + + + I++ HC A D +V Sbjct: 19 LPHKSNLLIAVSGGQDSLCLLKIMIDLQEKWGWN------IAIAHCDHGWASDLGIADHV 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + I + K +K AAARE RY + E A+ + I+T HT D+ E Sbjct: 73 EKIANNWNIPFYL---KVAKAMKETEAAAREWRYQSLVEIAEENDCREIVTGHTLSDRSE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R G+G + ++NL RP L+ R + F Q + ED + Sbjct: 130 TLLYNLIRGAGSNGLGALTWKRPLTNNINL--VRPLLKVSRGETLEFCQQFALPIWEDAA 187 Query: 194 NTDDRFERVRVRR 206 N + + R R+R+ Sbjct: 188 NANLDYARNRIRQ 200 >gi|332359485|gb|EGJ37304.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056] Length = 425 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDNSNFQNDYLRNRIR 189 >gi|320547724|ref|ZP_08042009.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812] gi|320447799|gb|EFW88557.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812] Length = 421 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL L+ + ++ G I+ V+H R + E Y+ D + + Sbjct: 21 VLIAVSGGVDSMNLLHFLY--IYQKNLG-IEIGIAHVNHKQRVESDIEENYLRDWANEYQ 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V + + + AR+ RY + N T ++TAH DDQ ET++MR R Sbjct: 78 IPIYVSYFLGNFSEK----TARDFRYHFFKQIMNEQNYTALVTAHHADDQAETIFMRLLR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSG+ + N + RPFL ++D+ +I ED SN F R Sbjct: 134 --GSRLRHLSGIQAVSPF-ANGELIRPFLAYFKKDL------PDIFHFEDDSNQSLEFLR 184 Query: 202 VRVR 205 R+R Sbjct: 185 NRIR 188 >gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217] gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217] Length = 436 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 19/192 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 A L+AVSGG DS + L + S+ KI F + LR D + +V + Sbjct: 19 ARFLLAVSGGLDS----VVLAHLFSE---CKIDFEIAHCNFNLRGKESDADAVFVEKLAE 71 Query: 79 RLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L + + ++ + + AARE RY E + + + TAH D LET Sbjct: 72 KLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHAKDDLET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G GL+G+ T + N + RP L RE+I ++ ++W ED SN Sbjct: 132 FLINLSR-----GSGLNGL--TGITAENDRLVRPLLPFSREEILTYAEANTLAWREDSSN 184 Query: 195 TDDRFERVRVRR 206 D++ R +R Sbjct: 185 ASDKYLRNHLRH 196 >gi|300934617|ref|ZP_07149873.1| cell cycle protein MesJ [Corynebacterium resistens DSM 45100] Length = 344 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 15/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V +SGG+DS+ LLI ++ R FG ++ A+ VDH L++ ++ L Sbjct: 1 MVVGLSGGADSLALLI-----VAIR-FG-MEVHAVIVDHGLQDGSEQVAETARQQAEDLG 53 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A + V + A AR ARY + + AK ++ AHT D E V + R Sbjct: 54 AASARVIAVQCRADD--EAQARAARYEALGQIAK---GKPVLVAHTASDDAEGVLLSLAR 108 Query: 142 DY---AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 A GM + +++ W+ RP L C R + N+SW EDP N R Sbjct: 109 GSGLDALAGMRAATRDHPVVHAGAGWLGRPLLMCDRAATELVCREANVSWWEDPHNRSSR 168 Query: 199 FERVRVR 205 + R VR Sbjct: 169 YLRSCVR 175 >gi|299140703|ref|ZP_07033841.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735] gi|298577669|gb|EFI49537.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735] Length = 439 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 88/361 (24%), Positives = 148/361 (40%), Gaps = 70/361 (19%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 LVA+SGG DS+ LL R ++ + I+V HC LR E+ +DE R+ ++C Sbjct: 16 LVALSGGCDSVALL---------RVMIELGYH-IAVIHCNFQLRGEESERDE-RFCEELC 64 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + ++ V + + + AARE RY + K I A I+ AH DD +E Sbjct: 65 NSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQDDTVE 124 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV + R G G+ G+ + N + RP L R DI ++L ++ D S Sbjct: 125 TVLLNLIR-----GTGIHGLQG--IKPKNGHVIRPLLSMTRNDIENYLSSIQQTFITDSS 177 Query: 194 NTDDRFERVRVRR----FVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-- 244 N +R ++R +R+I+ ++ L K D+ +NA+ + + V Sbjct: 178 NLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDVAKVFDNALQESVERVTLVRK 237 Query: 245 ---------HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + I+ Q + +I F +++ + C L Sbjct: 238 ADRYVVDIDKLEREISPEQTLYSILKNFSFSSVQIESIACS---------------LDAP 282 Query: 296 SGKRGCVSIGRVVIDRR----ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 +GK+ + VIDR A L + V +P Y VWD + +F N++ + Sbjct: 283 TGKKWLSNTHEAVIDRGTLVIAPLLDASNKVLKVPETGCY-----VWDDKVKF-NITSHV 336 Query: 352 I 352 I Sbjct: 337 I 337 >gi|33862341|ref|NP_893901.1| hypothetical protein PMT0068 [Prochlorococcus marinus str. MIT 9313] gi|61216599|sp|Q7V987|TILS_PROMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33640454|emb|CAE20243.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 343 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 40/302 (13%) Query: 20 AHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A +L+AVSGG DSM GLLI L R G DH + + + + Sbjct: 33 ASLLIAVSGGQDSMALLGLLIDL-----QRKHG-WSLEVWHGDHNWHKQSATIATELKNW 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129 C + S S + QT A AR RY ++ HA+ +++ ++T HT Sbjct: 87 CESHNL--SFCSDQAKPGQTNNEATARHWRYEQLTLHAERLSSNNPNHPCRYVLTGHTSS 144 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNI 186 D+ ET+ + R G+ C I D N+ + RP L RED + + Sbjct: 145 DRAETLLLNLARGTDLAGLSSMRQCRPISKDHPHKNVQLIRPLLGFSREDTALICSELGL 204 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--DLH-ALYLKMKKFQDLRVKVNN----AVAMLIP 239 DP+N++ F R RVR+ V + LH L+M + R+ ++ A+AML Sbjct: 205 PIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRMAALAE-RLNHHHADQQAIAMLAL 263 Query: 240 KYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 L+ R +A Q + +TLL Y L+ S G SLP + +E++ + Sbjct: 264 NNLSKQNGLCRKDLA--QLPITARTTLLAYWLKRS-----GAPSLPAVQ-LEQISQSIAP 315 Query: 297 GK 298 GK Sbjct: 316 GK 317 >gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596] gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596] Length = 485 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 10/191 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + K S V+H LRE A E V C + Sbjct: 24 LLVAVSGGPDSLALL---HFLRMANLVPKEAISVGHVNHGLRENAVKEQFIVQTYCEKYD 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V+ + G+ AR RY + + ++ AH DDQ+ET+ M Sbjct: 81 IPFFTEKINVNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G SG+ I RPFL + +I + + +++ D SN + Sbjct: 141 RLVR--GSSSIGWSGIQPKRSMQGGYAI-RPFLTITKSEIIEYANKHELAYEIDESNYNP 197 Query: 198 RFERVRVRRFV 208 ++ R R R V Sbjct: 198 QYTRNRYREEV 208 >gi|318043039|ref|ZP_07974995.1| MesJ-like protein [Synechococcus sp. CB0101] Length = 345 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 14/192 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +L+AVSGG DSM L+ L + + + + DH LR + + + Sbjct: 41 ASLLLAVSGGQDSMALVGLLRDL---QRLHQWRLQLWHGDHRLRADSSRQASELRQWAQH 97 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + SW +P AAAR RY+ + A+ A ++T HT D+ ET+ ++ Sbjct: 98 QGLVVQIESWGEPQPSE---AAARAWRYSALEAAARHCGARYVVTGHTASDRAETLLLQL 154 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL---RCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ + DL+L RP L R E+IR L + D SN++ Sbjct: 155 ARGSHRRGLASLQPQRALAADLSL--VRPLLLFSRLETEEIREQL---GLPLWLDASNSE 209 Query: 197 DRFERVRVRRFV 208 + R R+R+ V Sbjct: 210 PCYSRNRLRQEV 221 >gi|94676863|ref|YP_588575.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220013|gb|ABF14172.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 486 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 10/190 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI----KFSAISVDHCLRETAKDEVRYVSD 75 + +++A SGG DS LL L S L D + KI A+ ++H + D + Sbjct: 23 SKLVLAFSGGLDSTVLLDILTS-LRDTNNSKITALFSLRAVHINHGFNSNSDDWQIHCEQ 81 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + + + + + G+ AAAR ARY + + K +++TA DDQ+ET+ Sbjct: 82 QCRQRAVPYHFIKVRLKTKNNGVEAAARYARYQALYDVLKP--GEILLTAQHQDDQVETL 139 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R GLSGM + + + RP L C R + + N++W ED SN Sbjct: 140 LLAIKR--GSGPTGLSGMATNANWG-DYRLIRPLLTCSRMQLNRYASYFNLNWIEDDSNK 196 Query: 196 DDRFERVRVR 205 +DRF+R +R Sbjct: 197 NDRFDRNFLR 206 >gi|207722907|ref|YP_002253341.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|206588091|emb|CAQ18671.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 462 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRRED 176 ATL++TAH DDQ ETV ++ R G GL G+ + + + RP+L R D Sbjct: 122 GATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSD 176 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 I +++ ++W EDPSN D R+ R +R + + H Sbjct: 177 IETYVRTHALAWVEDPSNHDARYARNALRPLLAGMAGH 214 >gi|291298358|ref|YP_003509636.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM 44728] gi|290567578|gb|ADD40543.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM 44728] Length = 344 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 19/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 +LVA SGG DSM L A V G I+ ++VDH L+ + V+D Sbjct: 39 VLVACSGGPDSMALAAATAFVAP--RLG-IRAGLVTVDHGLQAGSAKRAATVADWARDAG 95 Query: 78 -SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +A V P+ AAR+ARYA ++E A+ + A+ ++ HT DDQ ETV Sbjct: 96 FEPVEVATVEVDVTAGGPE----GAARDARYAALTEAAQRLGASAVLLGHTRDDQAETVL 151 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + GL+ M + P R + +R+ W +DP NTD Sbjct: 152 LALARGSGPR--GLAAMPRKRRKFRRPLLDLP----RADTVRACRDLELPVW-DDPHNTD 204 Query: 197 DRFERVRVR 205 + R R+R Sbjct: 205 PAYARSRLR 213 >gi|302876588|ref|YP_003845221.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] gi|307687263|ref|ZP_07629709.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] gi|302579445|gb|ADL53457.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] Length = 462 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++VA+SGG DS+ LL + + + + V+HC+R A D + YV ++ +L Sbjct: 24 VIVALSGGPDSVVLLHVFNEL---KEVYNLTLYVAHVNHCIRGDAADSDEAYVIELSKKL 80 Query: 81 RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ K + G+ + A RE RY E + A I AH +DQ ETV Sbjct: 81 GIEFFVLREKVEEIARDRGISSEMAGREVRYKFFEELKHKLKADKIAVAHNANDQAETVL 140 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R +G+ G+ + D + RP + R +I + + ++ D +N Sbjct: 141 MRIMRGSGTEGIEGIKPVRDGVYI-------RPLIDVSRSEIERYCEENGLNPRIDATNL 193 Query: 196 DDRFERVRVR 205 + + R +VR Sbjct: 194 ETIYSRNKVR 203 >gi|241662709|ref|YP_002981069.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D] gi|240864736|gb|ACS62397.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D] Length = 472 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 27/204 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDV--CS 78 + +A+SGG DS L LH+ + R G +++ A+ + H L A DV C+ Sbjct: 41 VAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLHADA--------DVWECA 89 Query: 79 RLRIAHSV-VSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 R+A +V V++ + G+ AAREARYA + A++++TAH DDQ Sbjct: 90 CRRMAQAVGVTFHARRVNVAVDGGRGVEEAAREARYAALEALCTETGASILLTAHHQDDQ 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV ++ R G GL G+ + + + RP++ R +I + + W E Sbjct: 150 AETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIELYAHAHALCWVE 204 Query: 191 DPSNTDDRFERVRVRRFVRDIDLH 214 DPSNTD R+ R +R + + H Sbjct: 205 DPSNTDARYARNALRPLLAGMADH 228 >gi|283797945|ref|ZP_06347098.1| PP-loop family protein [Clostridium sp. M62/1] gi|291074411|gb|EFE11775.1| PP-loop family protein [Clostridium sp. M62/1] gi|295091863|emb|CBK77970.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Clostridium cf. saccharolyticum K10] Length = 241 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 18/211 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL AL + +SF AI+VD + + CS Sbjct: 26 IAVGLSGGKDSLALLYALKHIQKFYPKSF---DLCAITVDLGF---GNFNLEAAQEFCSS 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + +++V + ++ ++ A + R +++ AK + I AH DD ++ Sbjct: 80 LCVPYTIVPTEISQVVFETRKESNPCALCAKMRKGALNQAAKNLGCNKIAYAHHRDDLID 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +G S T L ++L++ RPFL DI F + ++ C++P Sbjct: 140 TMLL----SLIYEGRFHSFSPKTYLDRMDLFVIRPFLYIPEADIIGFKNRYSLPVCKNPC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 D + +R V++ ++ I++ A +K + F Sbjct: 196 PVDGKTKREYVKQLIKTINMEASGVKDRLFH 226 >gi|254522025|ref|ZP_05134080.1| tRNA [Stenotrophomonas sp. SKA14] gi|219719616|gb|EED38141.1| tRNA [Stenotrophomonas sp. SKA14] Length = 428 Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 23/190 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78 A +LV SGG DS + LH + A+ V H L+ A D VR+ C+ Sbjct: 12 APLLVGYSGGVDST---VLLHWLWRCAQASGTPLRAVHVHHGLQSAADDWVRHCQQQCTT 68 Query: 79 ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + H V+ TGL + + A+ + ++ A DDQ ET Sbjct: 69 WDIELAVHHVQVA-----VGTGLGIEGAARQARRAAFAAELRDGETLVLAQHQDDQAETF 123 Query: 136 YMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +R+ R G G+ G+ + L +LW RP L+ R+ + + Q + W ED Sbjct: 124 LLRALR-----GSGVDGLAAMSAHSRLGRHSLW--RPLLQVPRDVLLDYARQHTLYWVED 176 Query: 192 PSNTDDRFER 201 PSN DD +R Sbjct: 177 PSNADDHADR 186 >gi|320530147|ref|ZP_08031217.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399] gi|320137580|gb|EFW29492.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399] Length = 480 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 81/190 (42%), Gaps = 15/190 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSR 79 HILVA SGG DS+ LL L R G + V+H +R A + + R+V D C+ Sbjct: 37 HILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGIRGAASRADARFVKDYCAV 93 Query: 80 LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + + L +AR RY + + I TAH DD ETV Sbjct: 94 QGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREECGCDCIATAHHADDLAETV 153 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G G +G+ +D L RP L R +I S+ R ++ D +N Sbjct: 154 LMRILR-----GTGTAGLAAIREWDGVLL--RPLLTATRAEIVSYARARALAPRSDETNE 206 Query: 196 DDRFERVRVR 205 R R+R Sbjct: 207 MCDAMRNRIR 216 >gi|290889686|ref|ZP_06552775.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429] gi|290480683|gb|EFD89318.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429] Length = 299 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 5/189 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS L L S+ + VDH LR + +E + + D + Sbjct: 24 LLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRVDSANETKLIDDQFANRG 80 Query: 82 IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W K P +G+ AAR+ RY A + A I+ A DDQ ET ++ Sbjct: 81 LCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKII 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRF 199 R + + + D + + RP L + +I + + ++ W ED +N D D Sbjct: 141 RGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDYT 200 Query: 200 ERVRVRRFV 208 R ++R V Sbjct: 201 SRNQIRNVV 209 >gi|28899075|ref|NP_798680.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633] gi|153839744|ref|ZP_01992411.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio parahaemolyticus AQ3810] gi|260362390|ref|ZP_05775345.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030] gi|260876843|ref|ZP_05889198.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034] gi|260897275|ref|ZP_05905771.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466] gi|61217347|sp|Q87MF4|TILS_VIBPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28807299|dbj|BAC60564.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633] gi|149746728|gb|EDM57716.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio parahaemolyticus AQ3810] gi|308085351|gb|EFO35046.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466] gi|308091370|gb|EFO41065.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034] gi|308113972|gb|EFO51512.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030] Length = 438 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 23/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEV--RYVS 74 ++VA SGG DS LL L + S + A+ V H L E A K +V + Sbjct: 22 VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLE 133 CS R+ NS L+A REARY ++ H IN L++T DDQ+E Sbjct: 79 ISCSVERVNLDT----NSGESIELLA--REARYEALARH---INRGDLLLTGQHADDQVE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R KG LS M +++ + + RP L +RE I + + W ED S Sbjct: 130 TFLLALKRGSGPKG--LSSMAESMPFAGGTLV-RPLLNTKREQIEATAKNIGLEWVEDES 186 Query: 194 NTDDRFERVRVRRFV 208 N D R++R +R + Sbjct: 187 NQDTRYDRNFLRHRI 201 >gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82] Length = 487 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 32/224 (14%) Query: 16 LVYPAH---ILVAVSGGSDSMGLLIALHSVLSDR---SFGKIKFSAISVDHCLRETAKDE 69 L++P+ + VA SGG DS LL ++ L + S + + +VDH L++ + D Sbjct: 15 LIWPSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVISFTVDHDLQKKSSDM 74 Query: 70 VRYVSDVCSRLRIAH--SVVSWKNS----KPQTGLM--AAAREARYALISEHAKTINATL 121 + + + H S + W +P G M AR+ARYAL+ + + + Sbjct: 75 ANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADVDV 134 Query: 122 IMTAHTFDDQLETVYMR-----------SQRDYAEKGMGLSGMCDTIL-----YDLNLWI 165 + H DDQ+ET MR R GMG +G+ + L ++ WI Sbjct: 135 LAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMG-AGIDERSLSWAGHKGMSKWI 193 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208 RP L ++ I + Q N+ + DP+N R +RR + Sbjct: 194 VRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIRRLI 237 >gi|125716899|ref|YP_001034032.1| PP family ATPase [Streptococcus sanguinis SK36] gi|166988067|sp|A3CJX7|TILS_STRSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|125496816|gb|ABN43482.1| Cell cycle control ATPase, PP-loop superfamily, putative [Streptococcus sanguinis SK36] Length = 425 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L ++S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|325124579|gb|ADY84102.1| cell cycle protein [Acinetobacter calcoaceticus PHEA-2] Length = 417 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K I +DH L+ + + V+ + L I +++ K L A AR+ARY Sbjct: 8 KIRIIYIDHQLQSKSAEWGELVAKQATHLNIPYTIQ--KVQVTDGNLEAQARQARYQAYL 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169 +H + N L++ AH DQ ETV +R G G+ G+ +I + +++ I RPF Sbjct: 66 QHLQA-NEILVL-AHHQQDQAETVILR-----LLSGTGVDGLAAMQSIDHRVDMTIWRPF 118 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 L RE I + Q I + DP+N D ++R R Sbjct: 119 LDLTREQIAEWTTQLEIEYVVDPTNYDIHYDRAWSRE 155 >gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8] gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8] Length = 445 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 14/197 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V+ L + VA+SGG DS + LH V + ++ +++ A+ ++H L+ R Sbjct: 21 VQKLPACQELWVALSGGLDSS---LLLHVVAA--AYPRVR--ALHINHQLQSNHDQTERA 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 D+C+ L + V + L +AR ARY + E + L++ AH DDQ Sbjct: 74 CIDLCAGLGVELQVRRVNVATGAGSLEESARAARYEVFRE--VLGDNDLLLMAHHADDQA 131 Query: 133 ETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV R R G L+GM L +L+ RP+L R + ++ +SW ED Sbjct: 132 ETVLFRLLRGTGVNG--LAGMPVSRSLGRGHLY--RPWLGVSRSRLEQVAREQGVSWAED 187 Query: 192 PSNTDDRFERVRVRRFV 208 PSN + +R +R V Sbjct: 188 PSNQSEVHDRNYLRHSV 204 >gi|226945924|ref|YP_002800997.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ] gi|226720851|gb|ACO80022.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ] Length = 435 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L + R +A+ V H L+ A D + VC++L + Sbjct: 22 LAFSGGLDSSVLLHLLAGL--ARHHALPPLTALHVHHGLQSVADDWPEHCRQVCAQLGVP 79 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQRD 142 + + + G + R AR A A+ + A +++TA DDQ ET+ R R Sbjct: 80 LVI---RRVRVAAG-ASLERAAREARYRAFAEALGADEVLLTAQHLDDQAETLLFRLLRG 135 Query: 143 YAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + GM W+ RP L R ++ + + R + W EDPSN D RF R Sbjct: 136 AGVRGLAAMPGMRPLG----RGWLVRPLLEVSRGELEHYAVSRALHWIEDPSNRDLRFSR 191 Query: 202 VRVRRFV 208 +R V Sbjct: 192 NFLRHRV 198 >gi|284036229|ref|YP_003386159.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74] gi|283815522|gb|ADB37360.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74] Length = 446 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 17/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DSM + + S + FS A D E + Y Sbjct: 22 VLLAVSGGIDSMVMAELFYRSGQPFSIAHVNFSMRGAASGADAVFVENKANG--YGVPFH 79 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 S +R V+++ + AARE RYA S+ + T + TAH +D LET+ + Sbjct: 80 S-IRFDTKAVAYERG---ISIQMAARELRYAWFSQLLSEFSYTCLATAHHKNDVLETLLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL+G+ IL + N + RP L R+ + ++ + ++ + ED SN D Sbjct: 136 NLTR-----GTGLAGL-HGILANQNQ-VVRPLLFATRDQVVAYAIANSLEYREDSSNADV 188 Query: 198 RFERVRVRRFV 208 ++ R R+R V Sbjct: 189 KYARNRIRHHV 199 >gi|284008503|emb|CBA75013.1| tRNA(Ile)-lysidine synthetase [Arsenophonus nasoniae] Length = 446 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV SGG DS LL AL + L + + A+ + H L + A D + VC L+ Sbjct: 22 VLVGFSGGLDSTVLLHALVT-LRQTAVPNLNIRAVYIHHGLNDKADDWAIHCQQVCCDLQ 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +A + G+ AAAR+ARY E + +I+TA DDQ ET + +R Sbjct: 81 VAFYSQPVYIDPTKKGIEAAARDARYRAFRE--ILLPEEIIVTAQHLDDQAETFLLALKR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS M ++ + + ++ RP L R+ + + ++ +SW ED SN D R++R Sbjct: 139 --GSGPAGLSAMPISMPF-ADSYLIRPLLSFSRQQLVVYAQKKALSWIEDDSNQDQRYDR 195 >gi|57233795|ref|YP_182129.1| PP-loop family protein [Dehalococcoides ethenogenes 195] gi|57224243|gb|AAW39300.1| PP-loop family protein [Dehalococcoides ethenogenes 195] Length = 470 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 16/244 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78 IL+AVSGG DS+ +L +H + + F ++H LR E+ +D + Sbjct: 20 EILLAVSGGPDSVCMLYIMHKLSCEMGF---SLRLAHLNHSLRGEESERDAAYVAELAAA 76 Query: 79 -RLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + VS K + + L AARE RYA + A + + HT DD +ETV Sbjct: 77 LGVPLCQQKVSVKAYQAEHHLSTEEAAREMRYAFLCRTAAEYGSAAVAVGHTTDDNIETV 136 Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R +G+ GL + + T+ + L + RP L R + +++ + +S +D + Sbjct: 137 MLHLVRGSGTRGLQGLRPVLNRTVAGEGCLRVIRPLLGLSRAETQNYCCEAGLSPVQDVT 196 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251 N R R+R V L L F++ LR M + +T M++ + Sbjct: 197 NQSTDLLRNRIRLEV----LPMLRGINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 252 Query: 252 ISQD 255 I QD Sbjct: 253 IRQD 256 >gi|42560602|ref|NP_975053.1| hypothetical protein MSC_0042 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|61216536|sp|Q6MUI9|TILS_MYCMS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42492098|emb|CAE76695.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320504|gb|ADK69147.1| tRNA(Ile)-lysidine synthetase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 401 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 17/188 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS+ LL + ++ V++ R + ++ V+++C +L + Sbjct: 13 LIAVSGGPDSVFLLCNIVKLVDPNDL-----VVCHVNYNFRSDSNNDQMIVTNLCKQLNL 67 Query: 83 AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ S + + AR RY + A ++ AH +D +ET ++ Q Sbjct: 68 KLEILNINKDYSLLKQNFESWARAQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLLQLQ 127 Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ GL S D ++Y RP L ++ I ++L IS+ D +N+D Sbjct: 128 RNNLVDYYGLKPVSHYKDLVVY-------RPLLDIKKSQILNYLNTNKISYAVDSTNSDI 180 Query: 198 RFERVRVR 205 +++R ++R Sbjct: 181 KYQRNKIR 188 >gi|326803019|ref|YP_004320837.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a] gi|326650784|gb|AEA00967.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a] Length = 472 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 6/185 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DSM LL ++ ++ + F I ++H LR ++ E + C + Sbjct: 31 LAVSGGVDSMVLLRCFETL---QAIHGLNFFVIHINHRLRLESEAEQEMMVAYCQERDLD 87 Query: 84 HSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQR 141 V W++ G + A AR RY + K + ++TAH DDQ+ET MR Sbjct: 88 LKVSIWQHGADLAGNVEAKARAFRYHAFGKILKDKASLRLVTAHHSDDQVETGLMRLVHG 147 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + G+ + Y I RP L + + I + ED +N D F+R Sbjct: 148 GHLASFKGMESLSPLYTYP-KAQILRPLLEVEKASLYDIARVEGIPYQEDMTNWDKHFQR 206 Query: 202 VRVRR 206 R R+ Sbjct: 207 NRFRQ 211 >gi|158312163|ref|YP_001504671.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec] gi|158107568|gb|ABW09765.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec] Length = 608 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 17/207 (8%) Query: 6 IESVRFFVRSLVY---PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +VR VR V P +LVA SGG+DS+ L AL V R+ ++ ++VDH Sbjct: 6 VAAVRLAVRDAVADVPPGGLVLVACSGGADSLALAAALAFVAPRRA---LRAGLLTVDHG 62 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 +T++ V+ RL V P++ AAR++R A + + + A Sbjct: 63 WDDTSRPRAEEVA-ASGRLLGLSPVEVLAAPSPRS--EGAARDSRRAALLAAGERLGAHA 119 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV +R R + LSGM T + I RP LR RR+ R Sbjct: 120 VLLGHTLDDQAETVLLRLARGSGAR--SLSGMPAT-----DGAIRRPLLRLRRDQTRQAC 172 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + +DP+N D F R R R V Sbjct: 173 QSLGLEFWDDPTNADPAFARARTRSTV 199 >gi|148238412|ref|YP_001223799.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803] gi|147846951|emb|CAK22502.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803] Length = 350 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 23/208 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 +L+A+SGG DSM LL L + + DH + ++ C + Sbjct: 43 LLLALSGGQDSMALLGLLRDLQKHHHW---TLQLWHGDHGWHPGSAAVADALAQWCDQQA 99 Query: 80 --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN------ATLIMTAHTFDDQ 131 LR++ S + TG AAAR RY+ +S+ A+ +N A ++TAHT D+ Sbjct: 100 LPLRVSRSTAA------ITGSEAAARAWRYSELSQTAQQLNEAGAAGACTVLTAHTASDR 153 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWC 189 ET+ M+ R G+G + + + + RP L R++ + ++ Sbjct: 154 AETLLMQLSRGTDLAGLGSLRQSRPLQANSSHGPRLVRPLLDFTRDETAAICQDLHLPVW 213 Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHA 215 DPSN+D R ER R+R+ V + LHA Sbjct: 214 HDPSNSDLRIERNRIRQEVLPVLESLHA 241 >gi|152993772|ref|YP_001359493.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1] gi|151425633|dbj|BAF73136.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1] Length = 323 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 22/191 (11%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-A 83 A S G DS L L I+F VD+ +RE +K+E+ + + ++ Sbjct: 16 AFSAGVDSSALFFLLIE-------NNIRFDIAIVDYNIREQSKNELAHAKALAKEHKLFC 68 Query: 84 HSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H++ + P T + AR+ RY +T ++TAH +DQLE + MR Sbjct: 69 HTIQA-----PMFDTHFESKARKFRYKFFESLIQTEGYDNLITAHQLNDQLEWLLMR--- 120 Query: 142 DYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG G+S + + + + N + RP L ++++ +L + N + D SN D ++ Sbjct: 121 --LTKGAGVSELIGLEPVTHRENYTLVRPLLEYSKDELLIYLKENNHPYFIDESNIDVKY 178 Query: 200 ERVRVRRFVRD 210 ER R+ D Sbjct: 179 ERNLFRKQFSD 189 >gi|104783178|ref|YP_609676.1| cell cycle protein MesJ [Pseudomonas entomophila L48] gi|95112165|emb|CAK16892.1| putative cell cycle protein MesJ [Pseudomonas entomophila L48] Length = 431 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 18/190 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 VA SGG DS LL +L+D R AI V H L+ A + VC+ L Sbjct: 19 VAFSGGLDSTVLL----HLLADYARHHPAPPLRAIHVHHGLQAAADAWPDHCRAVCAALG 74 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140 I V+ P L AAR ARY + +N ++ T DDQ ET+ R Sbjct: 75 IELDVIP-VQVAPGASLEQAARNARYGAFEQ---LLNPGDVLFTGQHRDDQAETLLFRLL 130 Query: 141 RDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G GL G+ ++ + + RP L R+ ++++ + W +DPSN D Sbjct: 131 R-----GAGLRGLSAMPVHRVLGRGGLVRPMLGLSRQRLQAYAEAHGLVWVDDPSNRDTA 185 Query: 199 FERVRVRRFV 208 F R +R V Sbjct: 186 FARNFLRGEV 195 >gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans AK-01] gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans AK-01] Length = 480 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 15/209 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + + L A +L VSGG DS L+ L + + F ++ V+HC Sbjct: 13 FLEKVRQALYEQGLLFRGARVLAGVSGGPDSTALVHVLSRL--QKEFA-LQLGVAHVNHC 69 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGL--MAAAREARYALISEHAKT 116 LR E + + +V ++ + L + V ++ ++GL AAREAR A S + Sbjct: 70 LRGEESDRDALFVQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQE 129 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + H DD E + + R G G G+ + +N RP + R++ Sbjct: 130 HGYDFVALGHHADDNAEWMLISLIR-----GAGAGGLSG--IPPVNGKTVRPLFKLTRKE 182 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 I + + + W +D +N D R ++R Sbjct: 183 ILKYCRENALKWVQDSTNQDQSILRNQIR 211 >gi|325849662|ref|ZP_08170865.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480003|gb|EGC83081.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 463 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS L+ L+ + + F KI ++H R+ A D+ V + +L Sbjct: 27 IIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHMHRQDAIDDENLVIETGKKLS 83 Query: 82 ----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++H + + + A R RY + K I AH DDQ ETV M Sbjct: 84 LKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKNYKNAKIAVAHNMDDQAETVLM 143 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G GL G+ + Y N I RP + ++ I FL I + D +N Sbjct: 144 RIIR-----GSGLDGLK-AMDYK-NGHIIRPIMDFKKSQILKFLDYNKIDYHIDYTNLQR 196 Query: 198 RFERVRVR 205 + R ++R Sbjct: 197 DYTRNKIR 204 >gi|294673632|ref|YP_003574248.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23] gi|294473514|gb|ADE82903.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23] Length = 433 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 28/200 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRY 72 Y H LV +SGG+DS+ LL+ +L D + I HC LR E+ +DE ++ Sbjct: 18 YDLH-LVGLSGGADSVALLL----ILKDLGY------RIEAAHCNFRLRGEESDRDE-QF 65 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V ++C + I V+ + + + + AAR+ RY + + I AT + AH Sbjct: 66 VRNLCKQHDIPLHVIHFDTKEYAALHKVSIEMAARDLRYGYFRQLCQDIGATDVCIAHHR 125 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ M R G G+ G+ T + N + RP L R++I +L + Sbjct: 126 DDAVETLMMNLSR-----GAGIHGL--TGIRPKNDIVRRPLLCINRQEILEYLDSIGQPY 178 Query: 189 CEDPSNTDDRFERVRVRRFV 208 D SN + R ++R V Sbjct: 179 VTDSSNLEADVLRNKLRLMV 198 >gi|240047433|ref|YP_002960821.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae HRC/581] gi|239985005|emb|CAT04998.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae] Length = 295 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGG+DSM LL DR F K V++ LR+ + E V C + I Sbjct: 10 LLAISGGADSMYLL--------DR-FKKFDIIVAHVNYNLRKQSILEQDLVEKYCQKNNI 60 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + ++ KN + ++ + AR RY S+ + + ++ AH DD LET+ M+ ++ Sbjct: 61 TYQILELKNIEYKSNFQSEARNLRYKFFSQVYQKYHCDYLVIAHHSDDFLETILMQKLKN 120 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFL 170 G+ + + + +W RP + Sbjct: 121 KIVNFWGIKAKINN--FGMQIW--RPLI 144 >gi|323345484|ref|ZP_08085707.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella oralis ATCC 33269] gi|323093598|gb|EFZ36176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella oralis ATCC 33269] Length = 444 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 27/192 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 +VA+SGG+DS+ LL+ L + G + I HC LR E+ +DE + +C Sbjct: 25 VVALSGGADSVALLLTL------KRLGYV----IDAAHCNFHLRGEESQRDE-EFCISLC 73 Query: 78 SRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I +H + + AARE RY ++ I A + AH DD +E Sbjct: 74 KRENIRLHRSHFDTKAYAELHKISIEMAARELRYHYFNQLIHDIGAQGVCVAHHRDDSVE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV + R G G+ G+C + N + RP L R DI +L Q + + D S Sbjct: 134 TVLINLIR-----GTGIHGLCGIAARNGN--VLRPLLCVSRLDILEYLKQLHQEFVVDSS 186 Query: 194 NTDDRFERVRVR 205 N D R ++R Sbjct: 187 NLIDDVLRNKIR 198 >gi|293191233|ref|ZP_06609166.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309] gi|292820654|gb|EFF79623.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309] Length = 215 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 7/190 (3%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 S+ F+ + P ++V +SGG+DS+ L + V + I ++VDH LR + Sbjct: 27 SLTSFIDKVGAPPALVVGLSGGADSLALALTTIDVAA---RAGIPVVTVTVDHGLRAGSG 83 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +E R V+D L A +VV + + G +AR+AR A + A+ A +++ HT Sbjct: 84 EEARCVADRAESLG-ARAVVETVSVEGPGGPEGSARDARRAALRAVAQREGAPILL-GHT 141 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R L + D + RP L RR D Q ++ Sbjct: 142 MDDQAETVLLRLARGSGPS--SLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACAQAGLT 199 Query: 188 WCEDPSNTDD 197 +DP+N D Sbjct: 200 PIQDPTNDID 209 >gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826] gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826] Length = 436 Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 16/191 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA L+A+SGG DSM LL AL R+ A V+H D + + Sbjct: 18 PAAFLLALSGGRDSMALLQAL---TLRRARLAAPLLACYVNHGWSAAGADWGAFCQREAT 74 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +V + A AR RY ++ A+ +++TAH DDQ ET ++ Sbjct: 75 ARDVPCEIVKLDWADGGGNAEARARTLRYQALA--ARLPPRGVLLTAHHRDDQAETFILQ 132 Query: 139 SQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G GL G+ W RP L R I +F+ +++ +DPSN Sbjct: 133 ALR-----GSGLDGLAAMPARRAFAGGEHW--RPLLDVPRAAIEAFVAAEGVAYLDDPSN 185 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 186 ADPHYARNRLR 196 >gi|295670353|ref|XP_002795724.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01] gi|226284809|gb|EEH40375.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01] Length = 626 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGGSDSM L ++S+R + VDH RE + +E V+ Sbjct: 43 PSRIALAVSGGSDSMALAFLSKQLISERLIPDLNVKPFIVDHKAREGSTEEAHKVASWLK 102 Query: 79 RLRIAHSVVS--WKNSKPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ W + + L +AR+ RY ++ K N + H DD +E Sbjct: 103 DLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVE 162 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + G +G+ Sbjct: 163 TVLSRLVRG-QRQASGFTGVA 182 >gi|315650239|ref|ZP_07903312.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487484|gb|EFU77793.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 495 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 29/203 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 I++ VSGG+DS+ LL L+ + + +I+ + ++H +R E ++DE YV + C + Sbjct: 23 IVLGVSGGADSICLLHTLNEL---KKALEIRLFVVHINHGIRGEEASRDE-NYVREFCKK 78 Query: 80 LRIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAK--------TINATLIMTA 125 L + S+ S P+ M A R+ARY +K I+ I A Sbjct: 79 LNV--EFFSFHYSIPKVADMLKISEEEAGRKARYDSFENVSKDISKIEKIDISKIKIAVA 136 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D ET+ R G G+SG+ + N I RP L R++I +L + Sbjct: 137 HNKNDTAETMLHNLTR-----GSGISGLKGILAK--NGRIIRPLLSFTRDEIEEYLDKNK 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 I + D +N ++ + R +R V Sbjct: 190 IKYMTDSTNLENEYTRNILRNKV 212 >gi|300780433|ref|ZP_07090289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium genitalium ATCC 33030] gi|300534543|gb|EFK55602.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium genitalium ATCC 33030] Length = 289 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DS+ L+ A + D A+ VDH L+E + L + Sbjct: 12 VIGLSGGPDSLALVAAAAAEGCD-------MRAVVVDHGLQEGSASVAEQARAAAETLGV 64 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++V + + P + AAAREARY + A+ + + + AHT DDQ ET+ + + R Sbjct: 65 TATIVRVEVETAPGESVEAAAREARYQALFAEAEA-DGSDVWVAHTLDDQAETLLLGALR 123 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+S + +T L RPFL+ RR + + + DP N D + R Sbjct: 124 GNP---AGMSPVTETASGRL----VRPFLQIRRAETVGACEELGLQPWHDPMNDDTAYRR 176 Query: 202 VRVRRFV 208 V VR+ + Sbjct: 177 VAVRKSI 183 >gi|194246666|ref|YP_002004305.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali] gi|193807023|emb|CAP18459.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali] Length = 415 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 21/209 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 +++VSGG DSM LL +VL ++ I+ + + +H R E+ KD++ V + C + Sbjct: 16 IISVSGGVDSMVLL----NVLFHKN---IRLAVVHFNHLKRKESFKDKI-LVENYCLKNN 67 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + KP +R R + A I+TAH DD E ++M+ Sbjct: 68 IP---FFYFEIKPLSNNFQNESRLLRQKNLQSVALLYRTYYIITAHHLDDLAENIFMKIS 124 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G SG + + +PFL +++I ++ + NI + +D +NT D ++ Sbjct: 125 R--GSSLLGYSGGMQVKQKISDFYFLKPFLYVNKKEILNYAKKNNIHYLDDITNTLDIYK 182 Query: 201 RVRVRR-----FVRDIDLHALYLKMKKFQ 224 R +R F +DI+ ++K+ FQ Sbjct: 183 RNEIRNQIIPWFKKDINFLK-HIKIYHFQ 210 >gi|291518254|emb|CBK73475.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Butyrivibrio fibrisolvens 16/4] Length = 415 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 18/174 (10%) Query: 46 RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTG--LMA 100 R + A+ V+HC+R E A ++ YV +C ++ VV +TG Sbjct: 10 REEYNLDIHALHVNHCIRGEDADEDQAYVESICRDYQVPLKVVRVDIPALVKETGRSEEE 69 Query: 101 AAREARYALISEHAKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 AR ARY +A + + I AH DD ETV R G GL GMC Sbjct: 70 EARMARYEAFEAYADELSKESQADNVKIAIAHNADDNAETVIFHMAR-----GTGLDGMC 124 Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + I RP L + +I F+ + IS+C D +N+ ++R R+R + Sbjct: 125 G--IAPTRGRIIRPLLEVPKAEIMEFIQENEISYCVDETNSMVCYDRNRIRHNI 176 >gi|308272159|emb|CBX28766.1| hypothetical protein N47_L13640 [uncultured Desulfobacterium sp.] Length = 490 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80 ILV VSGG+DS+ L+ L+ + S +K ++H LR+ + D+ +V+ + +L Sbjct: 32 ILVGVSGGADSVTLIHVLYEIAPIFS---LKLGIAHLNHSLRKNESDDDAGFVNALSKKL 88 Query: 81 R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ ++ + + A R RYA + A I HT +D E V Sbjct: 89 NLPCFIEKKDVTKYKTENKLSVEEAGRRMRYAFFEDIAIKEGFNKIALGHTANDNAELVL 148 Query: 137 MRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M R +G+SG+ L + NL I RP ++ R +I ++ + +S D SN Sbjct: 149 MYLLRGSGP--LGISGIPPLRGGLKN-NLLIIRPLIKTLRPEIEGYISCKGLSHIIDKSN 205 Query: 195 TDDRFERVRVR 205 D+++ R ++R Sbjct: 206 MDEKYLRNKIR 216 >gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801 [Streptomyces scabiei 87.22] gi|260647954|emb|CBG71059.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 388 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G ++ I+VDH L+ + ++R +V RLR Sbjct: 89 VLVACSGGADSMALASAL--AFEAPKLG-VRAGGITVDHGLQPGS--DLR-AEEVVLRLR 142 Query: 82 -----IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A SV ++ P+ A A A + H A ++ HT DDQ ET Sbjct: 143 ELGLDPAESVAVTVGRDGGPEAAARDARYAALDAALERH----GAAAVLLGHTRDDQAET 198 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM D RPFL+ R+ R + +++ +DP N Sbjct: 199 VLLGLARGSGIR--SLSGMAAVSGADGRY--RRPFLQLDRQTARKACMVQSLPVWDDPHN 254 Query: 195 TDDRFERVRVR 205 TD + R R+R Sbjct: 255 TDPAYTRSRLR 265 >gi|269123409|ref|YP_003305986.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM 12112] gi|268314735|gb|ACZ01109.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM 12112] Length = 397 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 62/315 (19%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + IE + ++ IL+A S G DS+ LL L + + + ++ V+H Sbjct: 1 MFRNFIERNKLIEKN----DKILIAFSAGPDSVFLLEKLLEIKDEYN---LQLHLGYVNH 53 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R+ ++ V + ++ + +S++ K K ARE RY+ +S+ K I T Sbjct: 54 NFRDDVHKDMELVKKIANKYNLEYSILDIKLEKFTE---EKARELRYSALSDLKKRIKFT 110 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRR 174 I T H D ET+ R R G GL G+ D I+ RP L + Sbjct: 111 KIATGHNKTDNAETIIFRIIR-----GTGLDGLEGIRIKRDDII--------RPILYISK 157 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++I L Q + D +N ++ + R ++R V I + Sbjct: 158 DEI---LKQVYNEYVIDKTNLENNYSRNKIRNLVFPI----------------------L 192 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 A + KY+ +I+ I ++I+NI+ Y+L + ISL + +E++ L Sbjct: 193 AEINSKYID----NIVKIHKNIININDEKYEYILN---KLNEKNISLNT-KKIEQIYNIL 244 Query: 295 KSGKRGCVSIGRVVI 309 + + +G I Sbjct: 245 DKNESKIIDLGNEYI 259 >gi|145296694|ref|YP_001139515.1| hypothetical protein cgR_2599 [Corynebacterium glutamicum R] gi|140846614|dbj|BAF55613.1| hypothetical protein [Corynebacterium glutamicum R] Length = 297 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 20/188 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ + +SGG DS+ L+ A VL+++S + +AI +DH L + EV + + +R Sbjct: 14 HVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHNL-QAGSAEVTHNAAAMARH 65 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A ++V P G+ AAAREARYA ++ I AHT DDQ ET + Sbjct: 66 MGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI-----WVAHTMDDQAETYLLGGL 120 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +GM D L I RP L RR ++ + DP N DD F Sbjct: 121 RGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGACVELGLKPWHDPQNFDDAFR 173 Query: 201 RVRVRRFV 208 RV +R V Sbjct: 174 RVAIRNQV 181 >gi|260911822|ref|ZP_05918389.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella sp. oral taxon 472 str. F0295] gi|260634033|gb|EEX52156.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella sp. oral taxon 472 str. F0295] Length = 461 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ L L + K A+ + LR E+ +DE+ + ++C Sbjct: 25 LVALSGGADSVALFRILLRL-------DYKVEAVHCNFKLRGEESFRDEI-FCENLCREH 76 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V + ++ + + AARE RY + +N I AH DD +ET+ Sbjct: 77 GVTFHTVHFDTTEYAALHKLSIEMAARELRYNHFEKLRNDLNMDGICVAHHKDDNVETML 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GLSG+ T + N ++ RP L D+ +L + N + D +N Sbjct: 137 INLVR-----GTGLSGL--TGMTPQNGYVLRPLLAVSHTDLLEYLQELNQPYVTDSTNLA 189 Query: 197 DRFERVRVR 205 F R ++R Sbjct: 190 TDFTRNKIR 198 >gi|78223098|ref|YP_384845.1| tRNA(Ile)-lysidine synthetase-like [Geobacter metallireducens GS-15] gi|78194353|gb|ABB32120.1| tRNA(Ile)-lysidine synthetase-like protein [Geobacter metallireducens GS-15] Length = 468 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 16/197 (8%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 SL P ++VAVSGG+DS+ LL L S LSD ++ ++H LR D + R+ Sbjct: 16 SLFTPGDTVVVAVSGGADSVALLDILIS-LSDL---RLNLVVAHLNHSLRGAESDGDERF 71 Query: 73 VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V+D+ + + + V + + + L A R ARY A A + AH Sbjct: 72 VADLAASRGLPFAGEKADVRALSIRERLSLEDAGRRARYEFFDRVATQYGARSVALAHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ +R +G G++G+ ++ RP L R +I +L R + + Sbjct: 132 DDQAETLLLRLL-----RGAGVTGLSAMAPRRDGRFV-RPLLTLSRSEIEGYLHGRGLRF 185 Query: 189 CEDPSNTDDRFERVRVR 205 D SN D F R R+R Sbjct: 186 RIDSSNADTAFLRNRIR 202 >gi|257068456|ref|YP_003154711.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810] gi|256559274|gb|ACU85121.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810] Length = 364 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 83/193 (43%), Gaps = 19/193 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG+DS+ LL +V G ++ A VDH L++ + RL Sbjct: 39 LLVGLSGGADSLALLAT--AVWVGTRMG-LETEAAIVDHGLQDGSAQVAERALVQAERLG 95 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A V+ + + GL +AR AR+ + + A ++ AHT DDQ E V M Sbjct: 96 AAAHVLPVEVDLAAPGGLENSARAARHDALETLRRERGALALLMAHTLDDQAEQVLMGLA 155 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--------RREDIRSFLLQRNISWCEDP 192 R + LSG+ T + RPFL RR D ++ W EDP Sbjct: 156 RGGGPR--ALSGIPRT-----RGALLRPFLGTGRDERTALRRADTEEICRLHDLEWWEDP 208 Query: 193 SNTDDRFERVRVR 205 N D+ R RVR Sbjct: 209 MNADETLLRSRVR 221 >gi|77407669|ref|ZP_00784424.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1] gi|77173668|gb|EAO76782.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1] gi|319746208|gb|EFV98477.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae ATCC 13813] Length = 424 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ AH +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 14 LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ +S+ G+ + AR RY S+ + T ++TAH DDQ Sbjct: 71 Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV+MR R + LSG+ + N + RPFL ++E L NI ED Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175 Query: 193 SNTDDRFERVRVR 205 SN + R R+R Sbjct: 176 SNASSDYLRNRIR 188 >gi|298493031|ref|YP_003723208.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708] gi|298234949|gb|ADI66085.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708] Length = 324 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ L+ +L + K + DHC RE ++ +V ++ Sbjct: 26 LLVAVSGGQDSLCLIK---LLLDLQPKWKWSLAIAHCDHCWREDSQANAHHVENLAHNW- 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H+ + + A+AR RY +++ A+ N I+T HT D+ ET+ R Sbjct: 82 --HTPFYLETATNPVKNEASARNWRYQALTKIAEVHNYQYIVTGHTASDRAETLLYNLMR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL + + N+ + RP L R F + N+ +D +N + ++ R Sbjct: 140 GTG--ADGLQALTWQRPLNENIILVRPLLEVTRSQTEQFCQEFNLPIWQDSTNQNLQYAR 197 Query: 202 VRVRR 206 R+R+ Sbjct: 198 NRIRQ 202 >gi|170723226|ref|YP_001750914.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619] gi|169761229|gb|ACA74545.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619] Length = 426 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 78/189 (41%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +A SGG DS LL L+D R AI + H L+ A + + VC RL Sbjct: 15 IAFSGGLDSTVLL----HWLADYARIHATPPLHAIHIHHGLQPAADAWPGHCTAVCERLG 70 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLETVYMRS 139 I +V+ L AAR+ARYA +T+ ++ T DDQ ET+ R Sbjct: 71 IELTVIH-VQVPAGASLEQAARDARYAAF----ETVLGAGDVLFTGQHCDDQAETLLFRL 125 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G L+ M + RP L R + + + W EDPSN D F Sbjct: 126 LRGAGLRG--LAAMPQQRPLGRGH-VVRPLLNVSRAQLHEYAQTHGLIWAEDPSNADTAF 182 Query: 200 ERVRVRRFV 208 R +R V Sbjct: 183 ARNFLRAEV 191 >gi|22536199|ref|NP_687050.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R] gi|25010088|ref|NP_734483.1| hypothetical protein gbs0013 [Streptococcus agalactiae NEM316] gi|76797982|ref|ZP_00780241.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21] gi|77414471|ref|ZP_00790621.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515] gi|61217360|sp|Q8E2H4|TILS_STRA5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217362|sp|Q8E7Y2|TILS_STRA3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22533016|gb|AAM98922.1|AE014191_14 MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R] gi|23094439|emb|CAD45658.1| Unknown [Streptococcus agalactiae NEM316] gi|76586662|gb|EAO63161.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21] gi|77159481|gb|EAO70642.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515] Length = 424 Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ AH +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 14 LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ +S+ G+ + AR RY S+ + T ++TAH DDQ Sbjct: 71 Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV+MR R + LSG+ + N + RPFL ++E L NI ED Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175 Query: 193 SNTDDRFERVRVR 205 SN + R R+R Sbjct: 176 SNASSDYLRNRIR 188 >gi|76788050|ref|YP_328740.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909] gi|77405606|ref|ZP_00782695.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B] gi|76563107|gb|ABA45691.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909] gi|77175750|gb|EAO78530.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B] Length = 424 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ AH +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 14 LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ +S+ G+ + AR RY S+ + T ++TAH DDQ Sbjct: 71 Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV+MR R + LSG+ + N + RPFL ++E L NI ED Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175 Query: 193 SNTDDRFERVRVR 205 SN + R R+R Sbjct: 176 SNASSDYLRNRIR 188 >gi|77411309|ref|ZP_00787658.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111] gi|77162645|gb|EAO73607.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111] Length = 424 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%) Query: 17 VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ AH +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 14 LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ +S+ G+ + AR RY S+ + T ++TAH DDQ Sbjct: 71 Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV+MR R + LSG+ + N + RPFL ++E L NI ED Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175 Query: 193 SNTDDRFERVRVR 205 SN + R R+R Sbjct: 176 SNASSDYLRNRIR 188 >gi|239906277|ref|YP_002953017.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1] gi|239796142|dbj|BAH75131.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1] Length = 330 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 11/187 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +VA SGG DS+ LL A+ ++L +R G A +DH LR + E V +C +L + Sbjct: 19 IVACSGGPDSVALL-AMAAILRER-LGLAGLLAAHLDHGLRPESGTEAEAVGALCRKLGL 76 Query: 83 A----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V+ + +TG+ A R+AR A ++ + ++T H +D E MR Sbjct: 77 GCLSDRADVAAMARERRTGVEDAGRQARQAFFADCLAGRDNAWVLTGHQLNDLAEDQLMR 136 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G + D + RP L R + F + +DPSN D Sbjct: 137 VTR-----GAGWPALGGMAALDPARRLLRPLLLTPRSAVTEFTAALGLPTMDDPSNADPA 191 Query: 199 FERVRVR 205 + R RVR Sbjct: 192 YLRNRVR 198 >gi|255008100|ref|ZP_05280226.1| putative cell-cycle protein [Bacteroides fragilis 3_1_12] gi|313145817|ref|ZP_07808010.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12] gi|313134584|gb|EFR51944.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12] Length = 431 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76 +LVA+SGG+DS+ LL L S+ HC +E+ +DE +V + Sbjct: 22 VLVALSGGADSVALLRLLLSM----------GYTCEATHCNFHLRDKESDRDEA-FVRQL 70 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + V + + + AARE RY K A +I AH DD + Sbjct: 71 CHEAEVPLHTVHFDTIQYAADKHISIEMAARELRYEWFETLRKQRGAAVIAVAHHKDDSV 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R G G++G+ + N I RP L R++I ++L + N + D Sbjct: 131 ETVLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLSRDEIITYLQRMNQDYVTDS 183 Query: 193 SNTDDRFERVRVR 205 +N D + R ++R Sbjct: 184 TNLLDDYTRNKIR 196 >gi|260772239|ref|ZP_05881155.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14] gi|260611378|gb|EEX36581.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14] Length = 448 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A+SGG DS + LH + R + A+ V H L A V C++ Sbjct: 19 LVLALSGGVDSR---VLLHLLAQYRDQYAVNVRAVHVHHGLSRNADHWVEQCRTWCNQSH 75 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ V V+ + ++ + AR+ARY +++++ + L+ H DDQLET + Sbjct: 76 ISFDVEYVALERDSGES-IEKLARDARYRVLAQYVNQQDTLLL--GHHADDQLETFLLAL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG+ C + L RP L R+ I F +S D SN D R+ Sbjct: 133 KRGSGPKGLSAMAACASFSQGQLL---RPLLAVTRQQIEQFAQCHQLSSVNDESNADLRY 189 Query: 200 ERVRVRRFV 208 +R +R V Sbjct: 190 DRNFLRHQV 198 >gi|226954290|ref|ZP_03824754.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244] gi|226834961|gb|EEH67344.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244] Length = 463 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + + AI +DH L++ + + V L I Sbjct: 34 LIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGILVQQQSEALNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K S L AR ARY +H +++ AH DQ ET+ +R Sbjct: 88 P--CIIQKVSVDAGNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQAETLLLRLFSG 143 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ D D +W RPFL RE I + Q + DP+N+D ++R Sbjct: 144 AGVNGLAAMQQIDN-RKDFTIW--RPFLDLSREQIEQWSNQLGFEYVIDPTNSDIHYDRA 200 Query: 203 RVRR 206 R Sbjct: 201 WCRE 204 >gi|154508551|ref|ZP_02044193.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC 17982] gi|153798185|gb|EDN80605.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC 17982] Length = 369 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 7/190 (3%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 S+ F+ P ++V +SGG+DS+ L + V + I ++VDH LR + Sbjct: 27 SLTSFIDEAGAPPALVVGLSGGADSLALALTTIDVAA---RAGIPVVTVTVDHGLRAGSG 83 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +E R V+D L A +VV + + G +AR+AR A + A+ A +++ HT Sbjct: 84 EEARRVADRAESLG-ARAVVETVSVEGPGGPEGSARDARRAALRAVAQREGAPILL-GHT 141 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R L + D + RP L RR D Q ++ Sbjct: 142 MDDQAETVLLRLARGSGPS--SLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACAQAGLT 199 Query: 188 WCEDPSNTDD 197 +DP+N D Sbjct: 200 PIQDPTNDID 209 >gi|327392817|dbj|BAK10239.1| tRNA(Ile)-lysidine synthase TilS [Pantoea ananatis AJ13355] Length = 435 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 7/185 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL L + R +++ A+ V H L A + +C R + Sbjct: 14 LVVAFSGGLDSTVLLHQLRAWQQARPRSRLR--ALHVHHGLSPNADSWAAHCLCLCERWQ 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V+ + + G+ AAAR+ RY + + A + L +TA DDQ ET+ + +R Sbjct: 72 IPCEVLRVQVTDQGQGIEAAARQVRYQALGQ-ALCADEKL-LTAQHLDDQCETLLLALKR 129 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G + RP L R + + + W ED SN D R++R Sbjct: 130 G---SGPAGLAAMPAAATFAGHALLRPLLNHSRLSLEQYAKAHQLVWVEDESNQDQRYDR 186 Query: 202 VRVRR 206 +R+ Sbjct: 187 NFLRQ 191 >gi|288940435|ref|YP_003442675.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180] gi|288895807|gb|ADC61643.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180] Length = 477 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 12/190 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +A SGG DS +L+A +V+ R G+ + A+ VDH L+ + D R+ + C+ L Sbjct: 25 IAYSGGLDS-SVLLAAAAVIRARLPGEDSSGRLRAVHVDHGLQTASADWARHCAARCAAL 83 Query: 81 RIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ S+ S P G L A AREARYA+ L++TA DDQ ET+ + Sbjct: 84 RLPLSIER-PTSTPGPGESLEAWAREARYAIFRR--LLAPGDLLLTAQHRDDQAETLLLA 140 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + + + RP L R+ + + ++ + W +DPSN Sbjct: 141 LLRGSGPHGLAAMPVVAPLGAGR---LVRPLLDFGRQSLADYACRQGLDWLQDPSNDHTA 197 Query: 199 FERVRVRRFV 208 F+R +R V Sbjct: 198 FDRNYLRHRV 207 >gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059] Length = 425 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IDSQKELD-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|294649384|ref|ZP_06726815.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194] gi|292824754|gb|EFF83526.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194] Length = 463 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DSM LL + + + AI +DH L++ + + V L I Sbjct: 34 LIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGILVQQQSEALNI 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K S L AR ARY +H +++ AH DQ ET+ +R Sbjct: 88 P--CIIQKVSVDAGNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQAETLLLRLFSG 143 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ D D +W RPFL RE I + Q + DP+N+D ++R Sbjct: 144 AGVNGLAAMQQIDN-RKDFTIW--RPFLDLSREQIEQWSNQLGFEYVIDPTNSDIHYDRA 200 Query: 203 RVRR 206 R Sbjct: 201 WCRE 204 >gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325] gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325] Length = 439 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/265 (22%), Positives = 118/265 (44%), Gaps = 28/265 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVC 77 I +A+SGG DS ++ H ++++ + ++H LRE + +E ++V D Sbjct: 13 IAIALSGGVDS---IVLFHLLVTEYKDSYKELVVFHINHGLREESYEEAGFVEKFVKDFD 69 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +S T ARE RY ++ AK T ++TAH +DQ+E + M Sbjct: 70 VKFYKEELNMSDLERDSHTSEEMLARELRYQAFNKMAKLEGVTKLLTAHHKNDQVENILM 129 Query: 138 RSQRDYAEKGMGLS---GMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G + +C+ I + LN++ RP L + ++ + ++N+ + D + Sbjct: 130 RLLT-----GRSIDHSLAICEEIEMAGLNIY--RPLLNSLKAELEEYAKEKNLHYYVDAT 182 Query: 194 NTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI----PKYLTVH 245 N D + R +R + DI+ + + F + +NN + I Y+ Sbjct: 183 NFDTDYTRNNIRHNIVPLLNDIN-SGSFDNLINFANYYQNINNNLKKTILSKKDNYIFSR 241 Query: 246 MRSIIAISQD-ILNIDSTLLFYLLR 269 + I++ +D L ++ +++LL+ Sbjct: 242 DKDKISLVKDKFLELNEEEMYFLLK 266 >gi|189502540|ref|YP_001958257.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus 5a2] gi|189497981|gb|ACE06528.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus 5a2] Length = 454 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 25/195 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +L+AVSGG DS+ + H ++ F+ + LR E+ +DE +V + + Sbjct: 30 VLLAVSGGVDSVVMCSLFHE-------ARLHFAIAHCNFGLRGQESEEDEA-FVHTLAQQ 81 Query: 80 LRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ ++ K +K T + AARE RYA E + TAH +D LE Sbjct: 82 YQVEFFTKRFNTKAYAKTNKLSTQM--AARELRYAWFKELCNIHQIDKLATAHHANDCLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV KG ++G+ + NL RP L +E++ + + +SW ED S Sbjct: 140 TVLFN-----LTKGTSIAGLHGILPKQNNL--IRPLLFASKENLLQYAQAKGLSWREDSS 192 Query: 194 NTDDRFERVRVRRFV 208 N D + R +R V Sbjct: 193 NKQDDYARNLIRHQV 207 >gi|256544712|ref|ZP_05472084.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Anaerococcus vaginalis ATCC 51170] gi|256399601|gb|EEU13206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Anaerococcus vaginalis ATCC 51170] Length = 462 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS L+ L+ V + + KI ++H R A ++ + V +L Sbjct: 27 IIVGASGGPDSQFLIYLLNEV---KDYYKINIVLAHLNHLHRLDANEDEKLVEKTGEKLE 83 Query: 82 ----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I H + K + A R RY I AH DDQ ETV M Sbjct: 84 FKTFIDHKSMDDYAKKEKISAENAGRILRYDFFRSIKNKYKNAKIAVAHNKDDQAETVLM 143 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G GL G+ + Y N I RP + + +I FL + IS+ D +N + Sbjct: 144 RIIR-----GSGLDGLR-AMDYK-NKDIIRPIMDFTKSEILEFLDENKISYHIDYTNLET 196 Query: 198 RFERVRVR 205 + R ++R Sbjct: 197 DYTRNKIR 204 >gi|146281928|ref|YP_001172081.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501] gi|145570133|gb|ABP79239.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501] Length = 382 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 6/154 (3%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 AI V H L+ D + VC +L + +V P L AAR+ARY S A Sbjct: 4 AIHVHHGLQAAGDDWPAHCQRVCDQLGVTLEIVR-VRVVPGASLERAARDARYQAFS--A 60 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 L++T DDQ ET+ R R +G L M D + RP L R Sbjct: 61 CVGEGELLLTGQHRDDQAETLLFRLLRGAGVRG--LVAMPDARSMGRGS-LVRPLLEVSR 117 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 D+ + ++W EDPSN + R +RR V Sbjct: 118 ADLEDYARANGLAWVEDPSNQQLEYSRNFLRREV 151 >gi|182682123|ref|YP_001830283.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23] gi|182632233|gb|ACB93009.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23] gi|307578388|gb|ADN62357.1| cell cycle protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 435 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA SGG DS LL L S + R G AI + H L E A + + C+ Sbjct: 15 VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 71 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL IA VS + + AR A +A +H + AH DDQ ET + Sbjct: 72 IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R + GL+ M T +LW RP L R + + Q+++ W ED SN D Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 181 Query: 197 DRFERVRVRRFV 208 R +R +R V Sbjct: 182 LRHDRNFLRIHV 193 >gi|21672395|ref|NP_660462.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090671|sp|Q8KA23|TILS_BUCAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21623002|gb|AAM67673.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 445 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 14/186 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS LL + + +IK AI ++H L ++K + +C + +I Sbjct: 15 LIAYSGGIDSTVLLYKMLKIKEKNP--QIKIRAIHINHNLHPSSKKWEEHCIKICHKYKI 72 Query: 83 AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + K K + + R RY I + +N +++T H +DQ ET+++ + Sbjct: 73 P---IITKEIKILLKKNIEETLRIKRYNTIYNYL--LNDEILLTGHHLNDQCETLFLSLK 127 Query: 141 RDYAEKGMGLSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GLSGM + L I RPFL +++++ + + N+ ED SN + + Sbjct: 128 R--GSGPTGLSGMSIENFLGKKR--IVRPFLTKTKKELQKWACENNLESIEDFSNFNIDY 183 Query: 200 ERVRVR 205 +R +R Sbjct: 184 DRNFIR 189 >gi|325920753|ref|ZP_08182659.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865] gi|325548805|gb|EGD19753.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865] Length = 431 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 87/356 (24%), Positives = 136/356 (38%), Gaps = 47/356 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ILVA SGG DS LL L + R+ G A+ V H L A + C Sbjct: 11 PGPILVAYSGGMDSGVLLQLLAAAPRYRNIG---LRAVHVHHGLHADADAWAAHCQRQCD 67 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L+I + K ++ +GL A + + AH DDQ ET +R Sbjct: 68 ALQIPLQIARVKVAR-DSGLGLEAAARHARHAAFAETLTPGEWLTLAHHRDDQAETFLLR 126 Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A GL+ M LW RP L R D+ ++ + W EDPSN D Sbjct: 127 ALR--ASGPDGLAAMRAQRPFAGGMLW--RPLLHHARTDLLAYAQAHGLEWIEDPSNADI 182 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R++R +R + M Q + A+A + H+ + S +L Sbjct: 183 RYDRNFLRTQL-----------MPLLQQRWPQAAEALAR------SAHLSA--DASALLL 223 Query: 258 NIDSTLLFYLLRVSAAICGGQI-SLPGYRSMERVMLFLKSGK------RGCVSIGRVV-- 308 D+ LL +L + A+ ++ + P R + ++ + G ++ + + Sbjct: 224 QEDTALLPTMLTATGALDLQRLRAQPATRRPRLLRAWVSAAHAPPLPAHGITALEQEIDN 283 Query: 309 --IDRRANFLWITRAVRNL--------PTLILYPEETTVWDGRYQFQNLSDSLIQI 354 DR+A F W VR P P+ T WDG+ Q + +Q+ Sbjct: 284 HAPDRQARFAWQQVEVRRWRQCLYLLRPHAEWPPQWQTHWDGQAALQLPDGAQLQL 339 >gi|237786216|ref|YP_002906921.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385] gi|237759128|gb|ACR18378.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385] Length = 381 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 21/190 (11%) Query: 23 LVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ SGG+DS+ L+ A+ + A+ +DH L+ + ++VC L Sbjct: 62 IIGCSGGADSLSLVGCAIKQ--------GWRVHAVVIDHGLQAGSAGVATRAANVCQALG 113 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + VV P+ AARE RY + + A+ ++ AHT DDQ E++ + R Sbjct: 114 ASSQVV---KVSPREATETAAREERYRALGQVAQERGGLPVLVAHTGDDQAESLLLGLAR 170 Query: 142 DYAEKGMG-LSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G+G ++GM + + + RP L RR++ + I+ DP+NT Sbjct: 171 G---AGLGSIAGMPPVLFHHPVVDAGATALGRPLLSIRRDNTIGACAELGITPWHDPTNT 227 Query: 196 DDRFERVRVR 205 R RVR Sbjct: 228 SGDNLRSRVR 237 >gi|306836931|ref|ZP_07469883.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium accolens ATCC 49726] gi|304567186|gb|EFM42799.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium accolens ATCC 49726] Length = 345 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 49/232 (21%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCL- 62 + R VR+ + V +SGG+DS+ L A+ H V+ A+ VDH L Sbjct: 20 ACRRAVRAAQLDHTVGVGLSGGADSLALCAAMIAEGHDVI-----------ALCVDHGLQ 68 Query: 63 ---RETAKDEVRYVSDVCSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALI 110 RE A+ R + +R R+ +S+ + + AAA E R Sbjct: 69 DGSREQAERAARQAESLGARARVLEVQVPEEAGNSLEAAARQARYQAMSAAACEGRENAA 128 Query: 111 SEHAKTIN--------------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 S A+ A I AHT DDQ ET+ + + R ++GM + Sbjct: 129 SCRAEICERDAEPGKAARRGERALEIAVAHTADDQAETLLLGALRGR------VAGMPER 182 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + + RPFL+ RR D + + +DP N D F RV +RR + Sbjct: 183 AVVE-GARVVRPFLQVRRADTEGACAELGLEVWQDPQNADTDFRRVALRREI 233 >gi|28199394|ref|NP_779708.1| cell cycle protein [Xylella fastidiosa Temecula1] gi|61217346|sp|Q87BE2|TILS_XYLFT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28057500|gb|AAO29357.1| cell cycle protein [Xylella fastidiosa Temecula1] Length = 437 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA SGG DS LL L S + R G AI + H L E A + + C+ Sbjct: 17 VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 73 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL IA VS + + AR A +A +H + AH DDQ ET + Sbjct: 74 IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 128 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R + GL+ M T +LW RP L R + + Q+++ W ED SN D Sbjct: 129 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 183 Query: 197 DRFERVRVRRFV 208 R +R +R V Sbjct: 184 LRHDRNFLRIHV 195 >gi|71898703|ref|ZP_00680872.1| PP-loop [Xylella fastidiosa Ann-1] gi|71731468|gb|EAO33530.1| PP-loop [Xylella fastidiosa Ann-1] Length = 435 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA SGG DS LL L S + R G AI + H L E A + + C+ Sbjct: 15 VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 71 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL IA VS + + AR A +A +H + AH DDQ ET + Sbjct: 72 IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R + GL+ M T +LW RP L R + + Q+++ W ED SN D Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 181 Query: 197 DRFERVRVRRFV 208 R +R +R V Sbjct: 182 LRHDRNFLRIHV 193 >gi|194366664|ref|YP_002029274.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3] gi|194349468|gb|ACF52591.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3] Length = 476 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LV SGG DS + LH + A+ + H L+ A + V + C Sbjct: 60 APVLVGYSGGVDST---VLLHWLWRCAQASGTPLRAVHIHHGLQAAADEWVLHCQQQCIA 116 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I +V + TGL + + A+ + A DDQ ET +R+ Sbjct: 117 LGIELAVHR-VQVESDTGLGPEGAARQARRAAFAAELREGETLALAQHQDDQAETFLLRA 175 Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G G+ G+ D++L LW RP L+ R + Q + W EDPSN Sbjct: 176 LR-----GSGIDGLAAMSADSLLDGHRLW--RPLLQVPRSTLLDHARQHALRWIEDPSNG 228 Query: 196 DDRFER 201 DD +R Sbjct: 229 DDHADR 234 >gi|171778208|ref|ZP_02919437.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283032|gb|EDT48456.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 421 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL L+ + + G + + V+H R + E Y+ + + Sbjct: 21 VLIAVSGGVDSMNLLHFLY--IYRKKLG-VDIAIAHVNHKQRLESDTEEAYLREWAKEHQ 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V + + +T AAR+ RY E + T ++TAH DDQ ET++MR R Sbjct: 78 IPIYVAYFSGAFSET----AARDFRYKFFKELMAEHSYTALVTAHHADDQAETIFMRLLR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + I RPFL ++++ +I ED +N F R Sbjct: 134 --GSRLRHLSGMQTVNAFGDGELI-RPFLAYSKKEL------PDIFHFEDDTNRSLDFLR 184 Query: 202 VRVR 205 R+R Sbjct: 185 NRIR 188 >gi|332526282|ref|ZP_08402411.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2] gi|332110116|gb|EGJ10744.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2] Length = 429 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 12/196 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA + VA SGG DS LL A + + R G ++ A+ V H L +A + + C+ Sbjct: 2 PAAVAVAASGGRDSTALLHA--TARAARELG-LEVHALHVHHGLVASADIWLAQLRAQCA 58 Query: 79 RLRIA----HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 R + H + P G + A AR RYA ++ A+ L++ A DQ Sbjct: 59 RWARSGLPLHFHATRLAGAPARGESVEAWARRERYAALAAMAQAAGCDLVLLAQHRRDQA 118 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ +++ R + L+ M D +W +RP+L RE+I ++L + + W +D Sbjct: 119 ETLLLQALRGGGAEA--LAAMPRRAERDGLVW-ARPWLDRPREEIEAYLRRHRLRWLDDE 175 Query: 193 SNTDDRFERVRVRRFV 208 SN D+ F R R+RR V Sbjct: 176 SNDDEAFARNRLRRQV 191 >gi|262281632|ref|ZP_06059401.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA] gi|262262086|gb|EEY80783.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA] Length = 425 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + +F+ +L+A+SGG DSM LL L+ + I+ ++H Sbjct: 6 FLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKELD---IELILAHINHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINA 119 R A E + + ++ +L + S+ +G+ + +AR+ RY + + + Sbjct: 59 QRIEADQEEKQLKEIAQKLGVKILTSSF------SGVFSEKSARDFRYNFFKKVMQEEDC 112 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T ++TAH DDQ ET++MR R + LSGM D + I RP L + D + Sbjct: 113 TALVTAHHADDQAETIFMRILR--GSRLRYLSGMKDRQPFGGGELI-RPLLEFSKTDFPT 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + ED SN ++ + R RVR Sbjct: 170 ------VFHFEDASNFENTYFRNRVR 189 >gi|255066803|ref|ZP_05318658.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256] gi|255048878|gb|EET44342.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256] Length = 399 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 6/155 (3%) Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110 + A+ V H L A D + + + +C + V + K G+ AAAR+ARY Sbjct: 11 LNVHALHVHHGLSRNADDWLGFCTRLCQEWNVPFRSVKVEVKKDGLGIEAAARKARYQAF 70 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 S+ I I AH DDQ+ET + + R K + + + +W RP L Sbjct: 71 SDDPSGI----IALAHHQDDQIETFMLAAVRGGGIKALAAMPQWRKLDEETQIW--RPLL 124 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R+++ S+ N+ ED SN D F R +R Sbjct: 125 TFSRKELESYAAACNLPNIEDESNADTAFLRNWMR 159 >gi|322375226|ref|ZP_08049740.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300] gi|321280726|gb|EFX57765.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300] Length = 425 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F+R + H +++A+SGG DSM L L + + G I+ V+H R + Sbjct: 10 FLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTY--QKELG-IELIVAHVNHKQRSESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ A ARE RY + K + AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D ++ I RP L ++D I Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-DIEIIRPLLPFHKKDFPP------I 170 Query: 187 SWCEDPSNTDDRFERVRVR 205 ED +N ++ + R R+R Sbjct: 171 FHFEDQTNQENTYFRNRIR 189 >gi|220909149|ref|YP_002484460.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425] gi|219865760|gb|ACL46099.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425] Length = 336 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 21/200 (10%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L P +LVAVSGG DS+ L+ +L R + + DH R + + Sbjct: 27 RHLFTPGQRLLVAVSGGQDSLCLIK---LLLDLRPHWHWELAIGHCDHRWRSDSAANAAH 83 Query: 73 VSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V + + L+IA + P+T A +R RY +++E A+T N T ++T H Sbjct: 84 VQTLAEQWQLPFWLQIAAEI-------PRT--EAQSRTWRYEVLTEIAQTQNYTAVVTGH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T D+ ET+ R G+ ++ D+ L RP L R F ++N+ Sbjct: 135 TASDRAETLLFNLLRGSGTDGLQALVWQRSLATDIQL--VRPLLGLTRTQTGDFCREQNL 192 Query: 187 SWCEDPSNTDDRFERVRVRR 206 ED +N D ++ R R+R+ Sbjct: 193 PIWEDSTNQDYQYRRNRIRQ 212 >gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49] Length = 425 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDYQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGNVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQYFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|330959215|gb|EGH59475.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 445 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 10/179 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS +L+ L + LS R +A+ V H L+ A + VC L +A Sbjct: 30 IGFSGGLDST-VLLHLLADLSRRET-LPALNAVHVHHGLQAAADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V +P + AAR+ARYA ++ + +++T DDQ ET+ R R Sbjct: 88 FERVR-VQVEPGASIEQAARQARYAAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G L+GM IL +L RP L R ++ + LQR ++W EDPSN D +F R Sbjct: 145 GVRG--LAGMPVQRILGRGHL--VRPLLAVSRTELEDYALQRGLTWVEDPSNDDQQFSR 199 >gi|302553169|ref|ZP_07305511.1| hypoxanthine phosphoribosyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470787|gb|EFL33880.1| hypoxanthine phosphoribosyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 358 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ ++VDH L+ A +VR ++V RLR Sbjct: 59 VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHGLQ--AGSDVR-AAEVVLRLR 112 Query: 82 I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + +V ++ P+ AAR+ARYA + A+ AT ++ HT DDQ ET Sbjct: 113 ELGLDPVDSVTVTVGRSGGPEA----AARDARYAALDTAAERHGATAVLLGHTRDDQAET 168 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM D RPFL R+ R + +++ +DP N Sbjct: 169 VLLGLARGSGIR--SLSGMAAVSGADGR--YRRPFLELDRQTARKACMVQSLPVWDDPHN 224 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 225 ADPAYTRSRLR 235 >gi|15902054|ref|NP_357604.1| hypothetical protein spr0010 [Streptococcus pneumoniae R6] gi|116516781|ref|YP_815434.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39] gi|61217356|sp|Q8DRP9|TILS_STRR6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|122279568|sp|Q04N53|TILS_STRP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15457538|gb|AAK98814.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077357|gb|ABJ55077.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39] Length = 425 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET++MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|121605781|ref|YP_983110.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2] gi|254789039|sp|A1VRB1|TILS_POLNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|120594750|gb|ABM38189.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2] Length = 328 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG+DS LL+A ++R G+++ A + H L+ A D VR VC++ + Sbjct: 32 VAYSGGADSTALLLAA----AERWPGQVQ--AFHIHHGLQAAADDFVRVCESVCAKAGLP 85 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL--IMTAHTFDDQLETVYMRSQR 141 +V +++ +G R + + ++ DDQ+ET+ + R Sbjct: 86 LHIVQ-VDARHASGESPEDAARRARYAALATAATARGMQGVLLGQHADDQVETMLLALSR 144 Query: 142 DYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL G+ + RP L +R +L+++ I + +DP+NTD+R+ Sbjct: 145 -----GAGLPGLSAMPASFGRGGMVFYRPLLHIPSAVLREWLVEQPIEFVDDPTNTDERY 199 Query: 200 ERVRVR 205 R R+R Sbjct: 200 TRNRIR 205 >gi|330997932|ref|ZP_08321766.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT 11841] gi|329569536|gb|EGG51306.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT 11841] Length = 450 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS- 78 ILVA+SGG+DS+ LL+ L A+ + LR E+ +DE ++V D+C Sbjct: 27 ILVALSGGADSVALLLVLQQ-------AGFHCEAVHCNFHLRGEESDRDE-KFVRDLCRS 78 Query: 79 ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RL + + + AARE RY E I AH DD +ET+ Sbjct: 79 RSIRLHTKDFDTAAYARQKGISIEMAARELRYGYFEELRADWRFDKIAVAHHRDDNVETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + +G GL G+ T + N ++ RP L R++I +L + + D +N Sbjct: 139 LL-----HLVRGTGLKGL--TGMRYHNGYVIRPMLDTNRKEIERYLAGKGQPYVTDSTNL 191 Query: 196 DDRFERVRVR 205 + R ++R Sbjct: 192 ETEAVRNKIR 201 >gi|322373967|ref|ZP_08048501.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150] gi|321276933|gb|EFX54004.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150] Length = 421 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 83/186 (44%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG+DSM LL L++ D I+ ++H R+ ++ E Y+ + Sbjct: 21 ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHINHKQRQESEHEETYLRHWAKEHQ 77 Query: 82 IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ +S S K S+ AR RY K T ++TAH DDQ ET++MR Sbjct: 78 ISFHYSAFSGKFSEND------ARTFRYEFFRRVMKDYGYTALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+G+ + I RPFL + + ED SNT + Sbjct: 132 LR--GSRLRHLTGISAVRPFGTG-QIIRPFLHLTKAQLPETF------HFEDKSNTSLAY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|317120982|ref|YP_004100985.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM 12885] gi|315590962|gb|ADU50258.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM 12885] Length = 668 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 93/202 (46%), Gaps = 14/202 (6%) Query: 8 SVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 V F R L+ P H +LVAVSGG DS LL LH L +R G VDH LR Sbjct: 10 EVEAFARQHRLLRPGHRVLVAVSGGRDSTVLLDLLHR-LQER-LGLAALGVAHVDHGLRP 67 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + D+ R+V++ + + + + + L AAR ARY + E A A + Sbjct: 68 GSADDARWVAEQAAARGLPFLLRRVCVERGRRSLEDAARAARYRALREMAGEFGAHRVAL 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DQ ETV MR A G+ GL+GM RP L + ++ Sbjct: 128 AHHAGDQAETVLMRL---VAGAGVRGLAGM-----RPRRGPFVRPLLAVTPARLAAYAAA 179 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 R ++W +DP+N D R R RVR Sbjct: 180 RGLTWRDDPTNRDLRILRNRVR 201 >gi|306834613|ref|ZP_07467725.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338] gi|304423249|gb|EFM26403.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338] Length = 421 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL H + R +I+ ++H R+ ++ E Y+ + + + Sbjct: 21 VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77 Query: 82 IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + +G+ + AAR+ RY + N T ++TAH DDQ ET++MR Sbjct: 78 IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSGM + I RPFL ++++ I ED SN + Sbjct: 132 LR--GSRLRHLSGMQGVSSFCTGELI-RPFLTISKKNLPE------IFHFEDDSNQSLDY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|302559297|ref|ZP_07311639.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000] gi|302476915|gb|EFL40008.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000] Length = 341 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G ++ ++VDH L+ A ++R V LR Sbjct: 42 VLVACSGGADSMALASAL--AFEAPRLG-VRAGGVTVDHGLQ--AGSDLRAAEVV---LR 93 Query: 82 IAH---------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + +V ++ P+ A A A+ H A ++ HT DDQ Sbjct: 94 LTELGLEPVESVAVTVGRDGGPEAAARDARYAALDAVAERH----GACAVLLGHTRDDQA 149 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R + LSGM D RPFL+ R+ R + +++ +DP Sbjct: 150 ETVLLGLARGSGIR--SLSGMAAVSGADGRY--RRPFLQVDRQTARKACMAQSLPVWDDP 205 Query: 193 SNTDDRFERVRVR 205 NTD + R R+R Sbjct: 206 HNTDPAYTRSRLR 218 >gi|15837261|ref|NP_297949.1| cell cycle protein [Xylella fastidiosa 9a5c] gi|61217426|sp|Q9PFJ8|TILS_XYLFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9105537|gb|AAF83469.1|AE003910_5 cell cycle protein [Xylella fastidiosa 9a5c] Length = 437 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA SGG DS LL L S + R G AI + H L E A + + C+ Sbjct: 17 VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLHEHADAWTAHCAAFCTQHY 73 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL IA VS + + AR A +A +H + AH DDQ ET + Sbjct: 74 IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 128 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R + GL+ M T +LW RP L R + + Q+++ W ED SN D Sbjct: 129 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 183 Query: 197 DRFERVRVRRFV 208 R +R +R V Sbjct: 184 LRHDRNFLRIHV 195 >gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115] Length = 425 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFEKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLFTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|322412927|gb|EFY03834.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 428 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH + +I ++H R ++ E Y+ + Sbjct: 23 VLIAVSGGVDSMNLLHFLHLFQENL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 HSV + + T AAR+ RY + + + ++TAH DDQ ET+ MR R Sbjct: 78 --HSVPIYISHFEGTFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMRLIR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSG+ + N + RPFL ++D+ NI ED SN + R Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLPFSKDDL------PNIFHFEDTSNEETTVFR 186 Query: 202 VRVR 205 RVR Sbjct: 187 NRVR 190 >gi|262038802|ref|ZP_06012153.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264] gi|261747177|gb|EEY34665.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264] Length = 307 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 38/263 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 IL+A SGG DS + L+ +LS F + K+S + V+H LR + ++ +V Sbjct: 26 ILLAFSGGPDS----VFLYRILS---FFQEKYSLELALMYVNHNLRHDVEKDLEFVKRFS 78 Query: 78 S----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L V+ +SK + AARE RY+ ++E A + I T H DD +E Sbjct: 79 EENGVQLYTESVNVNDYSSKNRKSTELAARELRYSALTEKADDVGYDKIATGHNLDDNVE 138 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T R R + KG+ G+ + I+ RP L +++I L N + +D Sbjct: 139 TFIFRLLRGTSIKGLKGIPEKRENII--------RPILSFEKKEILDCLKANNEEYIKDY 190 Query: 193 SNTDDRFERVRVR------------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 +N + + R +R F R ID L ++K ++ K + V L Sbjct: 191 TNEQNDYTRNYIRNDIFPMFLRINPNFRRKID--ELISEIKNKENGENKKADFVKYLEEN 248 Query: 241 YLTVHMRSIIAISQDILNIDSTL 263 + ++ R I I +I + + + Sbjct: 249 DIEINRRKINRIYSNIFDEEGNI 271 >gi|256819419|ref|YP_003140698.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271] gi|256581002|gb|ACU92137.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271] Length = 431 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 31/193 (16%) Query: 25 AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEV---RYVS 74 A+SGG DS+ L L+ H + + + HC RE+ DE + + Sbjct: 16 AISGGIDSVVLTHLLYTHGI------------ELLLAHCNFQLRGRESDDDEAFVRTFAA 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ L + S Q AARE RY E A T I TAH +D LET Sbjct: 64 ELSVPLEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLET 123 Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R +G +G+ DTI+ RP L+ R+ I + + + W ED S Sbjct: 124 FFINLSRGSGLEGLLGIPEEKDTII--------RPLLQFSRQQIYEYAQAKRLKWREDSS 175 Query: 194 NTDDRFERVRVRR 206 N +++ R +R Sbjct: 176 NETNKYVRNVIRH 188 >gi|315452584|ref|YP_004072854.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179] gi|315131636|emb|CBY82264.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179] Length = 342 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 22/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78 L+ SGG DS +AL +L + + F DH LRE + E+ + + Sbjct: 17 LLGFSGGGDS----VALFHLLLEHG---LNFDLAIFDHGLREQTRAEIAHAKTLGKLYQK 69 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ + + +S N L A R+ARY T N T ++ AH +D+LE + M+ Sbjct: 70 RVHVGGAKLSGAN------LEAKCRKARYEFFENMMDTFNYTHLILAHHLNDKLEWLLMQ 123 Query: 139 SQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + + + +G S Y L RP + + + +L + + + ED +N+D Sbjct: 124 LGKGASLQTLLGFSASEKRKNYHL----IRPLIYTPKSALLDYLHRHKLRYFEDSTNSDL 179 Query: 198 RFERVRVRR 206 F+R +R Sbjct: 180 HFKRNLIRH 188 >gi|313894865|ref|ZP_07828425.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976546|gb|EFR42001.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str. F0430] Length = 425 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 80/190 (42%), Gaps = 15/190 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSR 79 HILVA SGG DS+ LL L R G + V+H +R A + + R+V D C+ Sbjct: 25 HILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGIRGAASRADARFVKDYCAV 81 Query: 80 LRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + + L +AR RY + + I TAH DD ETV Sbjct: 82 QGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREECGCDCIATAHHADDLAETV 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G G G+ +D L RP L R +I S+ R ++ D +N Sbjct: 142 LMRILR-----GTGTVGLAAMREWDGVLL--RPLLTATRAEIVSYARARALAPRSDETNE 194 Query: 196 DDRFERVRVR 205 R R+R Sbjct: 195 MCDAMRNRIR 204 >gi|157150417|ref|YP_001451360.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|189035973|sp|A8B000|TILS_STRGC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157075211|gb|ABV09894.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 425 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + +F+ +L+A+SGG DSM LL L+ + I+ ++H Sbjct: 6 FLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKELD---IELILAHINHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINA 119 R A E + + ++ +L + S+ +G+ + +AR+ RY + + + Sbjct: 59 QRIEADQEEKQLKEIAQKLGVKILTSSF------SGVFSEKSARDFRYNFFKKVMQEEDC 112 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T ++TAH DDQ ET++MR R + LSGM D + I RP L + D + Sbjct: 113 TALVTAHHADDQAETIFMRILR--GSRLRYLSGMKDRQPFGGGELI-RPLLEFSKTDFPT 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + ED SN ++ + R RVR Sbjct: 170 ------VFHFEDASNFENTYFRNRVR 189 >gi|15899960|ref|NP_344564.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae TIGR4] gi|111658620|ref|ZP_01409270.1| hypothetical protein SpneT_02000210 [Streptococcus pneumoniae TIGR4] gi|61217410|sp|Q97TC5|TILS_STRPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14971475|gb|AAK74204.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae TIGR4] gi|301793336|emb|CBW35695.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae INV104] Length = 425 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET++MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|330817518|ref|YP_004361223.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3] gi|327369911|gb|AEA61267.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3] Length = 477 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 19/225 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++VR + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVRVALGELPEHATIAIAYSGGLDSSVLLEA-----AARVAGAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A + + + L + V + + G+ A+ARE RY + + A + Sbjct: 69 ADAWLAHAEAAAAALGVRFDVERVEVPRGTGLGVEASAREVRYRALDAMGERHGAQALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSF 180 A DDQ ETV ++ R G GL+G+ + + ++ RP L R + + Sbjct: 129 AQHADDQAETVLLQLLR-----GAGLAGIAAMAPRYLPAEASMVRVRPLLHLLRAQLERY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 R + W +D SN D R+ R +R V L AL + F+D Sbjct: 184 AEARRLRWIDDESNADTRYTRNALRIEV----LPALSVHFPGFRD 224 >gi|307609584|emb|CBW99086.1| hypothetical protein LPW_08711 [Legionella pneumophila 130b] Length = 400 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 28/293 (9%) Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 A+ ++H + + + R+ +C L IA + + + + AAR ARY S Sbjct: 18 AVHINHGISGNSLNWQRHCEQLCLDLGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLL 76 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + N L++ H DDQ ETV ++ R G+ C + ++RPFL C R Sbjct: 77 ED-NDCLVL-GHHLDDQAETVLLQLFRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPR 131 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ + + W ED SN D ++ R +R V + L ++K+ + ++ A Sbjct: 132 VELEHYARIHELKWIEDESNQDTKYSRNYLRHRV-------MPLLLEKWPGVAGNISRAA 184 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR----------VSAAICGGQISLPGY 284 + + +I D+LN LL ++ + + +I LP Sbjct: 185 THCQQAKANLEVLAIKDCP-DLLNATDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSS 243 Query: 285 RSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333 ++ R+ ++F K VS ++ + R L++ +A + NLP I + + Sbjct: 244 KTFHRIIHEIIFAKLDAMPTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 296 >gi|328474388|gb|EGF45193.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 10329] Length = 438 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 90/195 (46%), Gaps = 23/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEV--RYVS 74 ++VA SGG DS LL L + S + A+ V H L E A K +V + Sbjct: 22 VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLE 133 CS R+ NS L+A REARY ++ H IN L++T DDQ+E Sbjct: 79 ISCSVERVNLDT----NSGESIELLA--REARYEALARH---INRGDLLLTGQHADDQVE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R KG LS M +++ + + RP L +RE I + + W ED S Sbjct: 130 TFLLALKRGSGPKG--LSSMAESMPFAGGTLV-RPLLNIKREQIEATAKNIGLEWVEDES 186 Query: 194 NTDDRFERVRVRRFV 208 N + R++R +R + Sbjct: 187 NQNTRYDRNFLRHRI 201 >gi|226294081|gb|EEH49501.1| PP-loop family protein [Paracoccidioides brasiliensis Pb18] Length = 690 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 6/141 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R + VDH RE + +E V+ Sbjct: 39 PSRIALAVSGGPDSMALAFLCKQLISERLIPDLNVKPFIVDHKAREGSTEEAHNVASWLK 98 Query: 79 RLRIAHSVVS--WKNSKPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ W + + L +AR+ RY ++ K N + H DD +E Sbjct: 99 DLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMC 154 TV R R + G +G+ Sbjct: 159 TVLSRLVRG-QRQASGFTGVA 178 >gi|225857820|ref|YP_002739330.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae 70585] gi|254789049|sp|C1C992|TILS_STRP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225721931|gb|ACO17785.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae 70585] Length = 425 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET++MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno] gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno] Length = 415 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 29/195 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 ILVA+SGG DS+ L LH + + + HC LR E+ DE +V + Sbjct: 12 ILVAISGGIDSVVLTHLLH----------FHGTELLLAHCNFQLRGEESDGDEA-FVRNF 60 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L I V + + Q AARE RY E +T + + TAH +D L Sbjct: 61 AKTLGIPLEVKRFDTKEYAKAHQLNTQLAARELRYEWFYELLETHHCDALATAHHANDNL 120 Query: 133 ETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET + R G +G+ D I+ RP L+ R+ I + + W ED Sbjct: 121 ETFLINLSRGSGLDGLLGIPQQTDKIV--------RPLLQWSRQQIYDYAEAHELQWRED 172 Query: 192 PSNTDDRFERVRVRR 206 SN +++ R +R Sbjct: 173 SSNASNKYVRNVIRH 187 >gi|94501920|ref|ZP_01308430.1| Cell cycle protein MesJ [Oceanobacter sp. RED65] gi|94425973|gb|EAT10971.1| Cell cycle protein MesJ [Oceanobacter sp. RED65] Length = 446 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 18/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG DS+ LL L + ++ I V+H L E A ++V +C Sbjct: 26 LYVGLSGGIDSVVLLF-LCKQFVEYHHSSVELHGIHVNHGLSEFADQWQQHVEGLCEAWS 84 Query: 82 IAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I +VS + Q G + AR ARY + +++ H DDQ+ET+ R Sbjct: 85 IP--LVSHRVELEQKGSIEEVARNARYDAFKRSLD--DQDVLVLGHHQDDQVETMMQRLM 140 Query: 141 RDYAEKGMGLSGMCD-TILYDLNLW------ISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G GLSG+ + L+L I RP L ++ I + + + +D S Sbjct: 141 R-----GSGLSGLLSMNVARTLDLGNNKQAIILRPLLSTTKKQIEQYANDHQLKYVQDDS 195 Query: 194 NTDDRFER 201 N D +F+R Sbjct: 196 NLDTQFDR 203 >gi|123967074|ref|YP_001012155.1| ATPase [Prochlorococcus marinus str. MIT 9515] gi|123201440|gb|ABM73048.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9515] Length = 338 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 20/199 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETAKDEVRYVSDVCS 78 A +L++VSGG DSM LL ++++D F I DH E ++ + + C+ Sbjct: 33 AKLLISVSGGQDSMALL----NLINDMKMQHNWFVNIWHGDHQWHEKSETYALELKNYCN 88 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLI----MTAHTFDDQ 131 + I S + +K AR+ RY ++E A + N I +T HT D Sbjct: 89 QKNI--SFFFDRANKQTISSEEKARDWRYKKLTERANQLFIENQKEIDIYLLTGHTNTDN 146 Query: 132 LETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET + R +YA GLS + L + ++++ RP L RED + F + I Sbjct: 147 AETFLLNLARGSNYA----GLSYIEKKRLLEPHIFLIRPLLIFSREDTKKFCQLQKIPIW 202 Query: 190 EDPSNTDDRFERVRVRRFV 208 EDP+N D + +R +R+ + Sbjct: 203 EDPTNYDLKIKRNLIRKKI 221 >gi|149194101|ref|ZP_01871199.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2] gi|149136054|gb|EDM24532.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2] Length = 323 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 17/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS L L I F V++ RET+ +EV Y + + Sbjct: 4 LLAFSGGIDSSALFFWLME-------KNIDFDIAIVNYHTRETSDEEVEYAKYLAKKY-- 54 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K+ + AR+ RY E K + ++ H +D+ E M+ Sbjct: 55 -NKKIFIKDCYLKKFSEKKARDCRYTFFEEIIKKYGYSTLILGHQLNDRFEWFLMQ---- 109 Query: 143 YAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 KG GL + ++ + I RPF R +I +L + NI + D SN D +++ Sbjct: 110 -LSKGAGLKELIAMEKWEEREFYKIYRPFYNLSRREIIEYLHKHNIKYFIDKSNFDIKYK 168 Query: 201 RVRVRR 206 R +R+ Sbjct: 169 RNLIRK 174 >gi|83748220|ref|ZP_00945246.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551] gi|83725061|gb|EAP72213.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551] Length = 475 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 21/217 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 + + FV S P + VA+SGG DS LL A + ++ A+ V H L+ Sbjct: 24 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGV-PVRLVALHVHHGLQVD 81 Query: 64 ----ETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E A + DV C R+ SV + + G+ AAREARYA + Sbjct: 82 ADAWEVACARMAAAVDVECHVRRVCVSVDAGR------GIEEAAREARYAALDALCAETG 135 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDI 177 ATL++TAH DDQ ETV ++ R G GL G+ + + + RP+L R DI Sbjct: 136 ATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSDI 190 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 ++ ++W +DPSN D R+ R +R + + H Sbjct: 191 ETYARTHALAWVDDPSNHDARYARNALRPLLAGMAGH 227 >gi|307129838|ref|YP_003881854.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937] gi|306527367|gb|ADM97297.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937] Length = 445 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 8/189 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H LVA SGG DS + LH + R + A+ V H L A + C R Sbjct: 26 GHYLVAYSGGLDSS---VLLHLMTRLRRRRALSLRAVYVHHGLSAHADTWAEHCRVQCLR 82 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++ V+ + G+ AAAR ARY + +H + ++TA DDQ ET + Sbjct: 83 WQVSFDVLPVQVDAHDGGVEAAARAARYQALQQHLH--DGETLLTAQHQDDQSETFLLAL 140 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G +W+ RP L RE + ++ ++W ED SN D+R+ Sbjct: 141 KRG---SGPAGLASMAAAAQSNGVWLQRPLLGMTREQLDAYARAYQLAWVEDDSNADERY 197 Query: 200 ERVRVRRFV 208 +R +RR V Sbjct: 198 DRNFLRRQV 206 >gi|283768240|ref|ZP_06341153.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219] gi|283105117|gb|EFC06488.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219] Length = 400 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 48/269 (17%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVAVS G DSM L+ + D I+ + ++ H R+ A +E ++ +I Sbjct: 9 LVAVSTGPDSMYLVHQCLELGMD-----IQIAHVNYHH--RKQAAEEEAFIRFFAEENQI 61 Query: 83 AHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V +N KP+ A ARE RY ++ + ++ AH +D LET M+ + Sbjct: 62 PLHV---RNDAFKPKGNFEAEAREWRYTFFAKIVRKEQLKGVLVAHQQEDLLETFLMQEE 118 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 + GL T++ ++ + RP L R+ +I +L + + D +N +D++ Sbjct: 119 KRLEPDYFGLKER--TMMQGIS--VVRPLLTMRKAEILRYLDEHQYRYFIDHTNLEDKYR 174 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R ++R H+ M F MR A+ Q+I + Sbjct: 175 RNQIR--------HSQVETMTDF----------------------MRE--ALLQEINRRN 202 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMER 289 S L RV+ I G++SL YR++E+ Sbjct: 203 SILQERRHRVAKYIQKGKVSLKLYRNLEK 231 >gi|207743488|ref|YP_002259880.1| hypothetical protein RSIPO_01666 [Ralstonia solanacearum IPO1609] gi|206594886|emb|CAQ61813.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 462 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 21/217 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 + + FV S P + VA+SGG DS LL A + ++ A+ V H L+ Sbjct: 11 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGV-PVRLVALHVHHGLQVD 68 Query: 64 ----ETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E A + DV C R+ SV + + G+ AAREARYA + Sbjct: 69 ADAWEVACARMAAAVDVECHVRRVCVSVDAGR------GIEEAAREARYAALDALCAETG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDI 177 ATL++TAH DDQ ETV ++ R G GL G+ + + + RP+L R DI Sbjct: 123 ATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSDI 177 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 ++ ++W +DPSN D R+ R +R + + H Sbjct: 178 ETYARTHALAWVDDPSNHDARYARNALRPLLAGMAGH 214 >gi|208779899|ref|ZP_03247243.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella novicida FTG] gi|208744354|gb|EDZ90654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella novicida FTG] Length = 398 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211] gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211] Length = 425 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL L+ R +I+ ++H +R+ + E + + +L Sbjct: 22 VLLAISGGLDSMTLLDWLYKY---REKLEIEIFLAHINHGVRKESDFEEEELKKIAKKLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S+ + S P + AR+ RYA + N T ++TAH DDQ ET++MR R Sbjct: 79 V--SIFTSSFSGPFSE--QKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFMRILR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +SGM + + N + RP L ++ + I ED +N ++ + R Sbjct: 135 --GSRLFHISGMKEKQKF-ANGELIRPLLSFQKSNFPP------IFHFEDWTNQENHYLR 185 Query: 202 VRVR 205 R+R Sbjct: 186 NRIR 189 >gi|322386421|ref|ZP_08060050.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100] gi|321269507|gb|EFX52438.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100] Length = 424 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L H + +R +I+ V+H R + E + +S+ +L Sbjct: 22 VLVAVSGGLDSMTLF---HLLYQNREELEIELGIAHVNHKQRPESNMEEKELSNFAQQLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + ++ + AR RY E T ++TAH DDQ ETV+MR R Sbjct: 79 VKFFSSNFSGDFSE----EKARRFRYRFFEEVMLAEGYTALVTAHHADDQAETVFMRLLR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + + N + R L ++D L ED SN + + R Sbjct: 135 --GARLRHLSGMTEVQSF-ANGELIRLLLHFHKQDFPDIL------HFEDKSNLQNDYLR 185 Query: 202 VRVR 205 R+R Sbjct: 186 NRIR 189 >gi|315612149|ref|ZP_07887064.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296] gi|315315710|gb|EFU63747.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296] Length = 425 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F+R + H +++A+SGG DSM L L + ++ I+ V+H R + Sbjct: 10 FLRKEYFKKHSKVVLALSGGLDSMFLFHLLSTYQNELG---IELILAHVNHKQRSESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ A ARE RY + K + AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D + I RP L ++D I Sbjct: 120 HADDQVETILMRLIR--GSRLRYLTGIKESQVVD-GIEIIRPLLHFHKKDFPP------I 170 Query: 187 SWCEDPSNTDDRFERVRVR 205 ED +N ++ + R R+R Sbjct: 171 VHFEDQTNQENTYFRNRIR 189 >gi|144575199|gb|AAZ44022.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 291 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 L+AVSGG+DSM LL K K I V H R + + V + C + Sbjct: 6 LIAVSGGADSMFLL------------DKYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEK 53 Query: 80 LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I ++S G AR+ARY+ + K N ++ AH D LET YM+ Sbjct: 54 NNIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQ 113 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197 + + G+ + ++D++++ RPFL + ++ I F + I + +D SN + Sbjct: 114 KESNKMNFFYGIKKR--SFIFDMHVY--RPFLYKYTKKQICKFCRKNKIPYRDDYSNFES 169 Query: 198 RFERVRVRR 206 ++ R VR+ Sbjct: 170 KYTRNIVRK 178 >gi|29831207|ref|NP_825841.1| cell cycle protein [Streptomyces avermitilis MA-4680] gi|61217336|sp|Q82EF1|TILS_STRAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29608321|dbj|BAC72376.1| putative cell cycle protein [Streptomyces avermitilis MA-4680] Length = 345 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 15/200 (7%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---- 65 R L P +LVA SGG+DSM L AL G I+ I+VDH L+ Sbjct: 34 RDVPHDLPPPPLVLVACSGGADSMALASAL--AFEAPKLG-IRAGGITVDHGLQSGSDLR 90 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A + V + D+ + +V ++ P+ A A A H A ++ Sbjct: 91 ADEVVGRLVDLGLTPTESIAVTVGRDGGPEAAARDARYAALDAAARRH----GACAVLLG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + LSGM + RPFL+ R+ R + ++ Sbjct: 147 HTRDDQAETVLLGLARGSGIR--SLSGMA--AVSGTGGRYRRPFLQLDRQTARKACMAQS 202 Query: 186 ISWCEDPSNTDDRFERVRVR 205 + +DP N D + R R+R Sbjct: 203 LPVWDDPHNADPAYTRSRLR 222 >gi|297181898|gb|ADI18075.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 485 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++VA+SGG DS+ L L + + + + F + ++H LR A ++ + + Sbjct: 37 GRVVVALSGGGDSVVLAHLLCEMSAIARWSVVGF--LHINHQLRAVANEDADFCRQLSDE 94 Query: 80 LRIAH--SVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + V+ + G+ A RY + + ++ A + T HT DD ETV Sbjct: 95 LHVPFLIEAVNVRAMSRDRGISIEEAGHRLRYEIFNRICRSHLADCVATGHTRDDLAETV 154 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R R +G LSG + N ++ RP L R+++R +L R + ED +N Sbjct: 155 LLRLIRGAGPRG--LSG-----IRPRNGFVVRPLLDVTRKELREYLQVRGLPHREDATNE 207 Query: 196 DDRFERVRVR 205 D R R+R Sbjct: 208 DTSVARNRIR 217 >gi|184201576|ref|YP_001855783.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201] gi|183581806|dbj|BAG30277.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201] Length = 359 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 7/191 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+ SGG+DS+ L A + + G + A+ VDH L++ + + + Sbjct: 23 PPLVLLGCSGGADSLALAAAAAHL---QRRGTCRVGAVVVDHQLQDGSGEVAHRAAQTLR 79 Query: 79 RLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + V + ++ TG AAR ARY A ++ HT DDQ ETV + Sbjct: 80 GLGLDPVHVERVHVTRRGTGPEMAARLARYEAFRSVVARTGAAAVLLGHTRDDQAETVLL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM + + D L++ RP L R + + + DPSN D Sbjct: 140 GLTRGSGTR--SLSGMPERRVEDGVLYL-RPLLNVTRAETETVCAAEGLEPWLDPSNADT 196 Query: 198 RFERVRVRRFV 208 R R+R V Sbjct: 197 ALTRSRIRHEV 207 >gi|307707910|ref|ZP_07644385.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261] gi|307615975|gb|EFN95173.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261] Length = 425 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 31/254 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWEEQELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFLS------IFHFEDTSNKENHY 183 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R R+R L L + +F+D + + N + + +AI++ NI Sbjct: 184 FRNRIRNSY----LPELEKENPRFRDAILSIGNEI-----------LDYDLAIAELSKNI 228 Query: 260 DSTLLFYLLRVSAA 273 D L+ LL S + Sbjct: 229 DVENLYQLLSYSES 242 >gi|24378543|ref|NP_720498.1| putative cell-cycle protein [Streptococcus mutans UA159] gi|61217358|sp|Q8DWM9|TILS_STRMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24376391|gb|AAN57804.1|AE014853_11 putative cell-cycle protein [Streptococcus mutans UA159] Length = 423 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +IL+AVSGG DSM LL LH +I+ + V+H R A +E Y+ + Sbjct: 21 NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQRPQADEEEIYLKNWARDN 77 Query: 81 RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I +K G+ + AR+ RY K T ++TAH +DQ ETV++R Sbjct: 78 HIPFYTAVFK------GIFSEKKARDFRYTFFKNIMKEHGYTALVTAHHANDQAETVFLR 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+G+ + + N + RPFL+ ++++ NI +D SN D Sbjct: 132 LLR--GSRLRYLTGIKEIQEFG-NGQLIRPFLKFHKKEL------PNIFHFDDDSNQGDS 182 Query: 199 FERVRVR 205 + R R+R Sbjct: 183 YLRNRIR 189 >gi|325832756|ref|ZP_08165519.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1] gi|325485895|gb|EGC88356.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1] Length = 372 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 35/203 (17%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 L+ VSGGSDS L + + G++ + V+H LR E A ++ R+V+ + L Sbjct: 31 LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 88 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTAHTFD 129 + ++ + + + A AR RY +E HA T + I+TAHT D Sbjct: 89 VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 148 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-- 187 D++E+ YMRS G G G + N + RP L RE++R+++ +R Sbjct: 149 DRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 201 Query: 188 ----------WCEDPSNTD-DRF 199 W ED +N DRF Sbjct: 202 PVACDDAGCLWREDATNAHTDRF 224 >gi|256422772|ref|YP_003123425.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588] gi|256037680|gb|ACU61224.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588] Length = 445 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 29/190 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +L+AVSGG DS+ ++ L R ++ HC LR E+ +DE + +D+ Sbjct: 23 LLLAVSGGVDSV-VMAHLFKAAGYR---------FAIAHCNFQLRGDESVRDE-SFAADL 71 Query: 77 CSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RL++ V ++ SK + + AARE RY + + + + I+TAH D Sbjct: 72 ARRLQVTFHQVRFDTEAYTESK-RVSIQVAARELRYEWLEQTREQGGYSYIVTAHHMQDS 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ M KG G++G+ + L RP L +E++ ++ + +I + ED Sbjct: 131 VETLLMN-----LSKGTGIAGLHGILPKQGKLL--RPLLFAEKENLIAYAAEHHIPYVED 183 Query: 192 PSNTDDRFER 201 SN ++ R Sbjct: 184 SSNLTVKYTR 193 >gi|164428026|ref|XP_956207.2| hypothetical protein NCU01570 [Neurospora crassa OR74A] gi|16416041|emb|CAD01129.1| conserved hypothetical protein [Neurospora crassa] gi|157071979|gb|EAA26971.2| predicted protein [Neurospora crassa OR74A] Length = 797 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 39/169 (23%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF-----------------GKIKFSAISVDHCLR 63 HI A+SGG DSM L H + ++S GK++ A+ VDH LR Sbjct: 37 HIGCAISGGVDSMALAFLFHRLKQEKSLNASVSPNEQFRVGDNILGKVR--AVIVDHGLR 94 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV------VSWK-------NSKPQTGLMAAAREARYALI 110 E + +E + V+ + +I V ++W+ + K + AR+ RYA I Sbjct: 95 EGSDEEAQKVAHAI-KTKIGDMVDPTIETINWESELGPGVDPKTHPSIEPLARKLRYAAI 153 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTI 157 + + N + T H DDQ ET+ MR S R Y GL G+ + + Sbjct: 154 AGVCQRHNICSLFTGHHEDDQYETILMRMISGRGY----RGLQGIPNAV 198 >gi|332800081|ref|YP_004461580.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1] gi|332697816|gb|AEE92273.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1] Length = 462 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL H ++ +S I A +DH R ++++ +V +C R Sbjct: 23 VIVAVSGGPDSVCLL---HLFMTFKSELDISLYAAHLDHMFRGRESEEDACFVKTLCDRW 79 Query: 81 RIA--HSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + ++ ++GL AAR RY K A + T H +D ET+ Sbjct: 80 GVPLFSENINVPEYVKKSGLSPEDAARRVRYDFFERVKKQTGAQKVATGHNRNDHEETIL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-T 195 M R G GL G+ I + +I RP + REDI +L + I + D +N T Sbjct: 140 MNIFR-----GAGLDGLI-GIEPVRDCYI-RPLIEIPREDIERYLKHKEIPFRIDATNLT 192 Query: 196 DDRF 199 D F Sbjct: 193 TDYF 196 >gi|85057872|ref|YP_456788.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma AYWB] gi|123518068|sp|Q2NIN4|TILS_AYWBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|84789977|gb|ABC65709.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma AYWB] Length = 436 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 12/186 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM LL H +++ KIK + +H V + C L+ Sbjct: 17 IIAVSGGVDSMALL---HYLVAQ----KIKLQVVHFNHLTNSNTWKNKELVKNYC--LQN 67 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + ++ + PQ A AR R + + A I+TAH DD ET+ + R Sbjct: 68 SLGFHYFELNCPQKNFQAQARLLRQQKLMQIAAKHRTPFILTAHHLDDLAETILQKISR- 126 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + +G SGM + +++ +PFL + I S+ I + ED +N ++R Sbjct: 127 -SSTLLGYSGMQIQTSWTDFIFL-KPFLYIPKAKIISYAAFYKIPFLEDYTNQKLTYQRN 184 Query: 203 RVRRFV 208 ++R V Sbjct: 185 QIRHQV 190 >gi|295104817|emb|CBL02361.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 478 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 16/191 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 P + AVSGG+DSM LL+ L + FG SA V+H LR ++A + +V C Sbjct: 24 PLQLAAAVSGGADSMALLLLLRQLQP--RFG-YTLSACHVNHGLRGQSADRDEAFVRAEC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAA--AREARY-ALISEHAKTINATLIMTAHTFDDQLET 134 +RL + V P AR RY A + + I+A I TAHT +DQ ET Sbjct: 81 ARLGVPLRVFHAAELTPPPAHAGEDWARRLRYTAFVQLQGQGIDA--IATAHTANDQAET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R R G GL G I ++ RP L R + + +W D +N Sbjct: 139 LLLRLAR-----GTGLHGA-GGIRPRRGCYL-RPLLCLSRAETEAVCRAAGQTWVTDETN 191 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 192 DTDAYARNRLR 202 >gi|260437759|ref|ZP_05791575.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876] gi|292809781|gb|EFF68986.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876] Length = 457 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 17/193 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V +SGG+DS+ L L + S F I A+ V H +R E A ++ + ++C R Sbjct: 21 VIVGLSGGADSVALFHVLRELRSRYGFSII---AVHVHHGIRGEEADRDLDFCRNLCRRY 77 Query: 81 RIAHSVVSWKNSKPQTGL----MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + K L A R+ RY A + I AH +D+ ETV Sbjct: 78 GVELREFFYDIPKLAKELSLSPEEAGRKVRYDSFRSVASEYENSRIAVAHHGNDRAETVI 137 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R KG+ G+ M D I+ RP L + DI +L + + +C D +N Sbjct: 138 FNMTRGTGMKGLRGIVPMRDNII--------RPLLCVTKADILGYLDEIHQDYCLDSTNE 189 Query: 196 DDRFERVRVRRFV 208 + + R R+R + Sbjct: 190 SNDYSRNRIRNVI 202 >gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b] gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b] Length = 408 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 18/186 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL L D V H LRE + +E +V+ V + + Sbjct: 4 VLVAVSGGVDSIVLLDRLVKQGWD-------VGVAHVHHGLREASDEEYTFVAHVAASYQ 56 Query: 82 IA-HSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A H + ++ Q A R+ARY + + TAH DD LETV ++ Sbjct: 57 VAFHGTRLHFQEGASQ----AHYRKARYHFFEDVMNEHGYDTLATAHHADDVLETVLIQL 112 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R+ E + G+ + ++ I RP L+ + + + + ++W ED +N + + Sbjct: 113 HRNVIE----VKGIPERRVFGRGTLI-RPLLKETKAQLIEYARKNELAWREDATNQEVTY 167 Query: 200 ERVRVR 205 R R+R Sbjct: 168 LRNRIR 173 >gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces japonicus yFS275] gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces japonicus yFS275] Length = 462 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 93/374 (24%), Positives = 151/374 (40%), Gaps = 45/374 (12%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDVCSR 79 VAVSGG DSM L+ L + + K + A V+H LR E+A+D V R + D+ Sbjct: 26 VAVSGGVDSMCLVHLLRETMLQYLWPK-RIHAFIVEHGLRKESAEDAVITRRRLLDMGIP 84 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I W SK Q+ + AR RY +++ + TAH +DQ ET+ MR Sbjct: 85 STILPLNHKWDLSK-QSKIETIARVLRYRTLAKACLRHKIYGLFTAHHLNDQYETIVMRL 143 Query: 140 QRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + GL G+ + I + + RPFL + I+ + + WCED Sbjct: 144 LQRKPGTWGGLCGIRKVAPLPESEDIYGADQILLLRPFLSYPKTCIK-----KKVQWCED 198 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHM 246 SN D + VR +R + + L + FQ+L +V L+ + ++ Sbjct: 199 KSNKDIQLT---VRNAIRAVGVDTLVSTEIASISQTFQELEDHSQKSVHSLLKQCSCLYF 255 Query: 247 RSIIAISQDILN---------IDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKS 296 ++I + I I + L YL+ ++ + S+ G +R+ K Sbjct: 256 KAIHSFQMQIPCIIMDTSSDFIKTEFLMYLIDIITPKTKKKRRSIEGIS--KRLWNSTKP 313 Query: 297 GKRGCVSIGRVVIDRRANF-LWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSDS 350 G S D +++ L+ITR T +L T +WD R+ Q DS Sbjct: 314 LTAGGCSFTLTKDDNCSSYILFITREQFSKRDAQKATFVLKNGSTILWDNRFWVQVKYDS 373 Query: 351 LIQIGPQSYRKADV 364 + + D+ Sbjct: 374 AKSFTIRPLKSGDI 387 >gi|301167026|emb|CBW26605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bacteriovorax marinus SJ] Length = 430 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 15/201 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL L + +++F + SA ++H R E + ++C L+ Sbjct: 34 ICVALSGGVDSVTLLYCLKWI--EQNFNGPRISAHHINHGTRRENIREEDFCRELCRELK 91 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V T ARE RYA + + DD E M+S R Sbjct: 92 VPLKVSKVSLDLLSTNFEMKARELRYAEFKNELAP--HSFMALGQHIDDSYEWSLMQSFR 149 Query: 142 DYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 +G+ +C N RPF+ ++ I++ + ++W ED SN + RF+ Sbjct: 150 SATPSTSLGIP-VC-------NGSFIRPFMCLTKDQIKTLAKKLELTWYEDHSNDNVRFD 201 Query: 201 RVRVRRFVRD--IDLHALYLK 219 R +R+ + D + YLK Sbjct: 202 RNYIRKNITTSIADRYPKYLK 222 >gi|223933450|ref|ZP_03625435.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591] gi|302023120|ref|ZP_07248331.1| PP-loop family protein [Streptococcus suis 05HAS68] gi|330831862|ref|YP_004400687.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3] gi|223897888|gb|EEF64264.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591] gi|329306085|gb|AEB80501.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3] Length = 422 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L H + + I+ ++H RE + E +Y+ + Sbjct: 21 VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ + AAR+ RY + + T ++TAH DDQ ETV+MR R Sbjct: 78 VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LS + T + I RP L ++ D ED SN D ++ R Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184 Query: 202 VRVR 205 RVR Sbjct: 185 NRVR 188 >gi|71274509|ref|ZP_00650797.1| PP-loop [Xylella fastidiosa Dixon] gi|71900338|ref|ZP_00682473.1| PP-loop [Xylella fastidiosa Ann-1] gi|170730758|ref|YP_001776191.1| cell cycle protein [Xylella fastidiosa M12] gi|71164241|gb|EAO13955.1| PP-loop [Xylella fastidiosa Dixon] gi|71729913|gb|EAO32009.1| PP-loop [Xylella fastidiosa Ann-1] gi|167965551|gb|ACA12561.1| cell cycle protein [Xylella fastidiosa M12] Length = 435 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 +LVA SGG DS LL L S + R G AI + H L E A + + C+ Sbjct: 15 VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNEHADAWTAHCAAFCTQHD 71 Query: 79 -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL IA VS + + AR A +A +H + AH DDQ ET + Sbjct: 72 IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126 Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R + GL+ M T +LW RP L R + + Q+++ W ED SN D Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHTRAQLLDYAQQQHLDWIEDSSNVD 181 Query: 197 DRFERVRVRRFV 208 R +R +R V Sbjct: 182 LRHDRNFLRIHV 193 >gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] gi|319436953|gb|EFV92004.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] Length = 223 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AHT DDQ ETV + R + L GM +D W RP L R D R+ Sbjct: 9 VLLAHTLDDQAETVLLGLGRGSGARS--LRGMA---AWDAP-W-GRPLLGVRAADTRAAC 61 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 L ++W +DP NTD + RVRVRR V Sbjct: 62 LGLGLTWWDDPHNTDPTYTRVRVRREV 88 >gi|317488918|ref|ZP_07947448.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA] gi|316911992|gb|EFV33571.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA] Length = 371 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 35/203 (17%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 L+ VSGGSDS L + + G++ + V+H LR E A ++ R+V+ + L Sbjct: 30 LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 87 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTAHTFD 129 + ++ + + + A AR RY +E HA T + I+TAHT D Sbjct: 88 VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 147 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-- 187 D++E+ YMRS G G G + N + RP L RE++R+++ +R Sbjct: 148 DRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 200 Query: 188 ----------WCEDPSNTD-DRF 199 W ED +N DRF Sbjct: 201 PVACDDAGCLWREDATNAHTDRF 223 >gi|212694903|ref|ZP_03303031.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855] gi|237727139|ref|ZP_04557620.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D4] gi|265750423|ref|ZP_06086486.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212662463|gb|EEB23037.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855] gi|229433995|gb|EEO44072.1| tRNA(Ile)-lysidine synthase [Bacteroides dorei 5_1_36/D4] gi|263237319|gb|EEZ22769.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 434 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL L + F H E + + R+V+++C L Sbjct: 22 VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +A V + S+ + AARE RY + K +I AH DD +ET + Sbjct: 76 VALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGGAVIAVAHHRDDSVETFLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R+DI +L + D +N D Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYMRNKIR 196 >gi|89256102|ref|YP_513464.1| PP-loop family protein [Francisella tularensis subsp. holarctica LVS] gi|115314576|ref|YP_763299.1| PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156502120|ref|YP_001428185.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010788|ref|ZP_02275719.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. holarctica FSC200] gi|290954514|ref|ZP_06559135.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica URFT1] gi|295312030|ref|ZP_06802845.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica URFT1] gi|122325399|sp|Q0BMM2|TILS_FRATO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|122500940|sp|Q2A488|TILS_FRATH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988058|sp|A7NB76|TILS_FRATF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|89143933|emb|CAJ79152.1| PP-loop family protein [Francisella tularensis subsp. holarctica LVS] gi|115129475|gb|ABI82662.1| probable PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156252723|gb|ABU61229.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 398 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + DI F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLASIPHYKELHHGGVLRPLLKYSKIDIEGFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|237710749|ref|ZP_04541230.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455471|gb|EEO61192.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 434 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL L + F H E + + R+V+++C L Sbjct: 22 VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +A V + S+ + AARE RY + K +I AH DD +ET + Sbjct: 76 VALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGGAVIAVAHHRDDSVETFLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R+DI +L + D +N D Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYMRNKIR 196 >gi|261880480|ref|ZP_06006907.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella bergensis DSM 17361] gi|270332819|gb|EFA43605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella bergensis DSM 17361] Length = 455 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL L + A+ + LR E+ +DE V+ +C ++ Sbjct: 24 LVALSGGADSVALLCVLKRL-------GYHIEAVHCNFHLRGKESMRDEDFCVA-LCEKM 75 Query: 81 RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H + + Q + AARE RY + K ++A I AH DDQ+ETV Sbjct: 76 NMTLHRIHFDTTTYATLHQISIEMAARELRYGYFEQLRKDLSADDICVAHHRDDQVETVL 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL G+ + N + RP L R+++ S+L + D SN Sbjct: 136 LNLVR-----GTGLVGL--QGMKPRNGNVVRPMLAVSRDEVESYLNSIEQDYVTDSSNLI 188 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 189 NDVMRNKLR 197 >gi|251781481|ref|YP_002995782.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390109|dbj|BAH80568.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 428 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH D +I ++H R ++ E Y+ + Sbjct: 23 VLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 HSV + + AAR+ RY + + + ++TAH DDQ ETV MR R Sbjct: 78 --HSVPIYISHFEGIFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETVLMRLIR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSG+ + N + RPFL + D+ NI ED SN + R Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLSFSKGDL------PNIFHFEDTSNEETTVFR 186 Query: 202 VRVR 205 RVR Sbjct: 187 NRVR 190 >gi|186940996|dbj|BAG31126.1| putative cell cycle protein [Xanthomonas perforans 91-118] Length = 450 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 9/191 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+A SGG DS + LH + + + F A+ V H L A + C Sbjct: 30 PGPVLLAYSGGMDSS---VLLHLLAATPRYRHAGFRALHVHHGLHADADAWAAHCQRTCD 86 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L++ +V + ++ +GL A + + AH DDQ ET +R Sbjct: 87 TLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLLR 145 Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A GL+ M LW RP L R D+ ++ + + W EDPSN D Sbjct: 146 ALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAQGLRWIEDPSNADP 201 Query: 198 RFERVRVRRFV 208 R +R +R V Sbjct: 202 RHDRNFLRSQV 212 >gi|94266523|ref|ZP_01290211.1| PP-loop [delta proteobacterium MLMS-1] gi|93452852|gb|EAT03372.1| PP-loop [delta proteobacterium MLMS-1] Length = 382 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 92/231 (39%), Gaps = 53/231 (22%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVS G DSM LL AL ++ + +A +DH LR + + + +R Sbjct: 24 VLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYIDHGLRPAESGREQELVAIAAR-- 81 Query: 82 IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++W+ + L AARE RY + E A + A + AH DDQ Sbjct: 82 --ELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQELAGELAANTLAVAHQADDQA 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--------------------------------- 159 E + +R R A + GLSGM + L Sbjct: 140 EELLLRLLRGTARE--GLSGMAWSRLLADAGSGSAGPGIGGGADATFSKAEAVGAEPAAP 197 Query: 160 -----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D L + RP L + +I S+L +R I ED SN D RF R RVR Sbjct: 198 RPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDRRFLRNRVR 248 >gi|319757185|gb|ADV69127.1| ATPase [Streptococcus suis JS14] Length = 422 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L H + + I+ ++H RE + E +Y+ + Sbjct: 21 VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ + AAR+ RY + + T ++TAH DDQ ETV+MR R Sbjct: 78 VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LS + T + I RP L ++ D ED SN D ++ R Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184 Query: 202 VRVR 205 RVR Sbjct: 185 NRVR 188 >gi|254373192|ref|ZP_04988681.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. novicida GA99-3549] gi|151570919|gb|EDN36573.1| tRNA(Ile)-lysidine synthase [Francisella novicida GA99-3549] Length = 398 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQLYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|124267639|ref|YP_001021643.1| putative cell cycle protein [Methylibium petroleiphilum PM1] gi|171769838|sp|A2SIL9|TILS_METPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|124260414|gb|ABM95408.1| putative cell cycle protein [Methylibium petroleiphilum PM1] Length = 452 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 12/198 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 RS P + VA SGG DS LL A ++++ R G + A+ V H L A + + Sbjct: 14 RSAEPPRGLAVAYSGGRDSTALLHA--TLIAARDSG-LTVHALHVHHGLSARADAWLAHC 70 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINATLIMTAHT 127 C R V ++ + Q L A AR ARYA + A L++ AH Sbjct: 71 ESQCRRWARRGLPVCFRAMRVQLACRSGDSLEAVARAARYAALRTLAVEQGVALVLLAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ ET+ +++ R GL+GM +I D W +RP+L RE I +++ + +S Sbjct: 131 QRDQAETLLLQALRGAGV--AGLAGMPRSIERDGITW-ARPWLARPREAIEAYVRRYRLS 187 Query: 188 WCEDPSNTDDRFERVRVR 205 + +D SN D RF R R+R Sbjct: 188 YIDDDSNDDPRFARNRLR 205 >gi|315224848|ref|ZP_07866669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga ochracea F0287] gi|314945251|gb|EFS97279.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga ochracea F0287] Length = 428 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 31/193 (16%) Query: 25 AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE----VR-YVS 74 A+SGG DS+ L L+ H + + + HC LR T D+ VR + + Sbjct: 16 AISGGIDSVVLAHLLYTHGI------------ELLLAHCNFQLRGTESDDDEAFVRTFAA 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ L++ S Q AARE RY E A T I TAH +D LET Sbjct: 64 ELGVPLQVKRFDTHQYASFHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLET 123 Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R +G +G+ DTI+ RP L+ R+ I + + + W ED S Sbjct: 124 FFINLSRGSGLEGLLGIPEEKDTII--------RPLLQFSRQQIYEYAQAKRLKWREDSS 175 Query: 194 NTDDRFERVRVRR 206 N +++ R +R Sbjct: 176 NETNKYVRNVIRH 188 >gi|257792629|ref|YP_003183235.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243] gi|257476526|gb|ACV56846.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243] Length = 371 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 37/207 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 PA ++V SGGSDS L + + G++ + V+H LR E A ++ R+V+ + Sbjct: 28 PAMLMV--SGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLA 83 Query: 78 SRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTA 125 L + ++ + + + A AR RY +E HA T + I+TA Sbjct: 84 ELLDVPLFSCEIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTA 143 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DD++E+ YMRS G G G + N + RP L RE++R+++ +R Sbjct: 144 HTADDRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERE 196 Query: 186 IS------------WCEDPSNTD-DRF 199 W ED +N DRF Sbjct: 197 RDGAPVACDDAGCLWREDATNAHTDRF 223 >gi|171911398|ref|ZP_02926868.1| tRNA(Ile)-lysidine synthetase [Verrucomicrobium spinosum DSM 4136] Length = 332 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 30/241 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81 LV VSGG DS+ + G K ++H LR+ + + ++V D+ Sbjct: 26 LVGVSGGRDSVA------LLHFLLLLGYRKLIVCHLNHQLRDAESNTDAQFVRDLA---- 75 Query: 82 IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 IAH + ++ + ++ +T L A R+AR A + A + + AH DD +E Sbjct: 76 IAHGLGHEEITVDITAEAARTKTSLETAGRDARRAFFEQAAARHDCRNVFLAHHADDDVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R + G+ GM L I+RPFL RE+I +++ +++ ED + Sbjct: 136 TILHHLFRGSGLR--GIRGMDPISNSPGGLLITRPFLEITREEIDTYITTHGLAFREDST 193 Query: 194 N--------TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N T +R R RV F++++ + +++F L + + + +LT H Sbjct: 194 NAGSSLGAPTRNRI-RHRVLPFLKEMFQREVAGTLQRFARLAGRDEDFLQSATSAFLTDH 252 Query: 246 M 246 Sbjct: 253 Q 253 >gi|254374646|ref|ZP_04990127.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548] gi|151572365|gb|EDN38019.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548] gi|332678549|gb|AEE87678.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida Fx1] Length = 398 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + +C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQIC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|139439222|ref|ZP_01772664.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC 25986] gi|133775246|gb|EBA39066.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC 25986] Length = 512 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 23/211 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66 R+ A +++ VSGG+DS LL+ + D G+ + + V+H LR A Sbjct: 21 RTRQQAAPVVLMVSGGADSTALLLMACTSKLDIQDGRGVAPIARERLHVLHVNHHLRGKA 80 Query: 67 KD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA--------LISEHAKTI 117 D + +V ++C++ + V + AAARE RYA L ++ Sbjct: 81 SDGDEAFVRELCAQYGLPLCVEHAYFDGESGNIEAAAREVRYAAARRYVRELCAQTGAPR 140 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I TAHT D+ ET M A KG G +G+ +I N+ + RP L ++ Sbjct: 141 TAARICTAHTSSDRAETFLMN-----AIKGSGPAGL-SSIPRRRNI-VVRPLLDLTHGEL 193 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +L W ED SN D + R VR V Sbjct: 194 VGYLQVHGQPWREDESNEDISYLRNYVRHRV 224 >gi|300727992|ref|ZP_07061370.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14] gi|299774834|gb|EFI71448.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14] Length = 452 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 163/385 (42%), Gaps = 73/385 (18%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61 E V++F+ L +VA+SGG+DS+ LL+ L + I HC Sbjct: 5 EKVKYFINEHHLLDKDKKYIVALSGGADSVCLLLLLKKL----------HYQIEAAHCNF 54 Query: 62 -LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114 LR E+ +DE + ++C L+I + ++ + + + AAR+ RY+ Sbjct: 55 RLRGDESYRDE-EFCVNLCHALQIPLHRIHFETKEYAHLHKISIEMAARDLRYSYFENLR 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K I A I AH +D +ET+ + R G G+ GM + N I RP L +R Sbjct: 114 KDIQAEGICIAHHQEDCVETILINLIR-----GTGIQGMRGIL--PQNGHIIRPLLSIKR 166 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHA-----LYLKMKKFQDLR 227 +DI +L + ++ D +N + +R ++R + + L+A +Y + + Sbjct: 167 KDIEYYLQENRQNYVTDSTNLINDVQRNKIRLDIMPMLKQLNAGVVDNIYSTAQHLTEAN 226 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQD--------------ILNIDS--TLLFYLLRVS 271 +N+A I KYLT H SI + ++D I N S LL+Y+L + Sbjct: 227 CIINDA----IKKYLTQH--SIFSENEDFGLHSGYQKIRTESIENFSSPEYLLYYILS-N 279 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331 G QI Y++ L KSGK + ++IDR L I R L I Sbjct: 280 YDFSGSQIE-QIYKN-----LHGKSGKVWKSNSYELLIDREN--LIIKRRTEILDKTIKI 331 Query: 332 PEETTVWDGRYQFQNLSDSLIQIGP 356 PE G Y F S +I P Sbjct: 332 PEP-----GTYVFDETSKVIINNIP 351 >gi|146317675|ref|YP_001197387.1| ATPase [Streptococcus suis 05ZYH33] gi|146319865|ref|YP_001199576.1| ATPase [Streptococcus suis 98HAH33] gi|253750936|ref|YP_003024077.1| PP-loop family protein [Streptococcus suis SC84] gi|253752835|ref|YP_003025975.1| PP-loop family protein [Streptococcus suis P1/7] gi|253754660|ref|YP_003027800.1| PP-loop family protein [Streptococcus suis BM407] gi|145688481|gb|ABP88987.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus suis 05ZYH33] gi|145690671|gb|ABP91176.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus suis 98HAH33] gi|251815225|emb|CAZ50789.1| PP-loop family protein [Streptococcus suis SC84] gi|251817124|emb|CAZ54845.1| PP-loop family protein [Streptococcus suis BM407] gi|251819080|emb|CAR44104.1| PP-loop family protein [Streptococcus suis P1/7] gi|292557477|gb|ADE30478.1| PP loop-containing protein [Streptococcus suis GZ1] Length = 422 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L H + + I+ ++H RE + E +Y+ + Sbjct: 21 VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ + AAR+ RY + + T ++TAH DDQ ETV+MR R Sbjct: 78 VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LS + T + I RP L ++ D ED SN D ++ R Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184 Query: 202 VRVR 205 RVR Sbjct: 185 NRVR 188 >gi|254496251|ref|ZP_05109145.1| cell cycle protein MesJ [Legionella drancourtii LLAP12] gi|254354556|gb|EET13197.1| cell cycle protein MesJ [Legionella drancourtii LLAP12] Length = 443 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 39/318 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V SGG DS LL AL + S R+ K A+ ++H + A ++ + C L Sbjct: 23 LIVGFSGGLDSTVLLHALAAQPSLRT----KLVAVHINHGISSNASSWQQHCAQCCHDLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I S + + + AR ARYA+ + T + ++ H DDQ ETV ++ R Sbjct: 79 IQFITESVQFDR-SANIEEHARIARYAIFASLLTTKDCLIL--GHHQDDQAETVLLQLFR 135 Query: 142 DYAEKGMGLSGMCD-TILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G G+ G+ T + L + RPFL R + + + W ED SN + + Sbjct: 136 -----GAGIDGLAAMTAVSHLGAGTLVRPFLTYSRLQLAHYATVHQLIWIEDESNQEITY 190 Query: 200 ERVRVRR------------FVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVH 245 R +R+ V I AL+ + K L + + LI Sbjct: 191 SRNYLRQQIMPLLVEKWPGVVGTIARSALHCQQAKSNLDALATQDIEGGSELIT------ 244 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCV 302 + S +LN++ + +LRV + Q+ LP + R+ +L+ ++ V Sbjct: 245 LTSTSLCIDPLLNLNFARIANILRV--WLRNNQVQLPSTATFHRLINELLYARTDAAPAV 302 Query: 303 SIGRVVIDRRANFLWITR 320 S G ++I R +L++ R Sbjct: 303 SWGDILIRRYQKYLYLDR 320 >gi|71894625|ref|YP_278733.1| hypothetical protein MS53_0615 [Mycoplasma synoviae 53] Length = 286 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79 ++AVSGG+DSM LL K K I V H R + + V + C + Sbjct: 1 MIAVSGGADSMFLL------------DKYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEK 48 Query: 80 LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I ++S G AR+ARY+ + K N ++ AH D LET YM+ Sbjct: 49 NNIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQ 108 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197 + + G+ + ++D++++ RPFL + ++ I F + I + +D SN + Sbjct: 109 KESNKMNFFYGIKKR--SFIFDMHVY--RPFLYKYTKKQICKFCRKNKIPYRDDYSNFES 164 Query: 198 RFERVRVRR 206 ++ R VR+ Sbjct: 165 KYTRNIVRK 173 >gi|323126272|gb|ADX23569.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 428 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH D +I ++H R ++ E Y+ + Sbjct: 23 VLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 HSV + + AAR+ RY + + + ++TAH DDQ ET+ MR R Sbjct: 78 --HSVPIYISHFEGIFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMRLIR 135 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSG+ + N + RPFL + D+ NI ED SN + R Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLSFSKGDL------PNIFHFEDTSNEETTVFR 186 Query: 202 VRVR 205 RVR Sbjct: 187 NRVR 190 >gi|170078528|ref|YP_001735166.1| metallothionein [Synechococcus sp. PCC 7002] gi|169886197|gb|ACA99910.1| metallothionein [Synechococcus sp. PCC 7002] Length = 342 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 12/191 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVC 77 A +++AVSGG DS + L ++ D + ++++ HC DE +V + Sbjct: 24 AKLIMAVSGGQDS----VCLSRLMLD--LQRHWQWSLAIAHCHHGWPGDEEIAAHVQTLG 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ + +S P+T AAR RY ++ A+ ++ ++T HT D+ ET+ Sbjct: 78 AQWQLPFYLCRAVSSLPETE--NAARRWRYETLTHLAEQLDQAYVVTGHTQSDRAETLIY 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+G + + + + RP L R++ F Q N+ C DP N Sbjct: 136 NLVRGAGTAGLG--SLTERRSLSNKVKLVRPLLTITRQETGEFCRQFNLLVCFDPFNQQM 193 Query: 198 RFERVRVRRFV 208 RF+R ++R+ + Sbjct: 194 RFKRNQIRQQI 204 >gi|94264675|ref|ZP_01288457.1| PP-loop [delta proteobacterium MLMS-1] gi|93454906|gb|EAT05150.1| PP-loop [delta proteobacterium MLMS-1] Length = 382 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 92/231 (39%), Gaps = 53/231 (22%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVS G DSM LL AL ++ + +A +DH LR + + + +R Sbjct: 24 VLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYIDHGLRPAESGREQELVAIAAR-- 81 Query: 82 IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++W+ + L AARE RY + E A + A + AH DDQ Sbjct: 82 --ELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQELAGELAANTLAVAHQADDQA 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--------------------------------- 159 E + +R R A + GLSGM + L Sbjct: 140 EELLLRLLRGTARE--GLSGMAWSRLLADAGSGSAGPGIGGGADATFSKAEAVGAEPAAP 197 Query: 160 -----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D L + RP L + +I S+L +R I ED SN D RF R RVR Sbjct: 198 RPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDRRFLRNRVR 248 >gi|261822581|ref|YP_003260687.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163] gi|261606594|gb|ACX89080.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163] Length = 439 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 8/187 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS + LH +++ R + A + H L A + C + Sbjct: 24 ILLAYSGGMDSS---VLLHLLVAARQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCEHWQ 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ G+ AAAR ARY + H + ++TA DDQ ET + +R Sbjct: 81 VPFASLAVTVEAQNGGIEAAARTARYRALQAHLQ--EGETLLTAQHLDDQSETFLLALKR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ T+ + + RP L R + ++ + + W ED SN D+RF+R Sbjct: 139 GSGPAGLSAMAAQSTLGHYR---LIRPLLGFSRLQLEAYAQRHQLHWIEDDSNQDERFDR 195 Query: 202 VRVRRFV 208 +RR + Sbjct: 196 NFLRRQI 202 >gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326197251|gb|EGD54442.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 317 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 82/206 (39%), Gaps = 24/206 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +VR F + + VA+SGG+DS+ L A ++ A+ VDH L+ Sbjct: 10 VGAVRGFADRFLDDGPVCVALSGGADSLALTAAAVRA-------RLVVHAVVVDHGLQAG 62 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + V + + G AAAR ARY + ++ Sbjct: 63 SAEVAARAAAAARESGATAEVRTVEVGS-AGGPEAAARTARYDALR---AARGGRPVLLG 118 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLL 182 HT DDQ ETV + R + LSGM + W + RP L RR R Sbjct: 119 HTLDDQAETVLLGLGRGSGARS--LSGMSE--------WSAPWGRPLLGLRRAQTREACA 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 + +DP N D F RVRVR V Sbjct: 169 DWGLPIWDDPHNVDPGFTRVRVRSEV 194 >gi|329766712|ref|ZP_08258255.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136967|gb|EGG41260.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 21/226 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG DS+ LL ++ + S +F + AI++D + + + V + C++L Sbjct: 50 VAVAVSGGKDSLALLNVINQMKSTHNF---RIKAITIDEGIPGYRNEALEIVQEFCAKLN 106 Query: 82 IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + H V S+K +T + R I A I A +I T H Sbjct: 107 VEHKVFSYKELFDLTLDEALNLRGNEKTSSCSICGTLRRRAIDHAANDIGADVIATGHNL 166 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD L+T + K G D D L +PF +I + NI + Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMDPDTSDNTLRKIKPFCEIYESEIVFYAFTNNIPF 222 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 +P + R +R F+ ++ +K +Q + +KV+ V Sbjct: 223 QTEPCPHMNEGIRTEIREFLNSLEGKHSGIKNNLYQSI-IKVSQIV 267 >gi|206896469|ref|YP_002247248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter proteolyticus DSM 5265] gi|206739086|gb|ACI18164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter proteolyticus DSM 5265] Length = 314 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRY 72 +V I++AVSGG DSM + LH L+ R + + + +++H +R A ++V+ Sbjct: 15 EIVGTQGIVLAVSGGKDSM---VLLH--LAKRFEHHLPNNVVVATLNHGIRRDALEDVKL 69 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L V+ S R R A + + + A I TAH DD + Sbjct: 70 VVQCAQNLEFP--VIVGSLSPKSFCDENTLRSHRRAFLLDVMDQVKADRIWTAHHADDAV 127 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ +R R G GL G LYD + W ++P L EDI F + + + ED Sbjct: 128 ETMVLRLGR-----GAGLMGATSPKLYD-DPW-AKPLLTVFSEDIEEFRRRFGVPFREDS 180 Query: 193 SNTDDRFERVRVR 205 +N +ER ++R Sbjct: 181 TNLLTDYERNKIR 193 >gi|188533056|ref|YP_001906853.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99] gi|188028098|emb|CAO95955.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99] Length = 433 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 7/196 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ + +SL +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAIAYLEQSLAAEHAVLLAYSGGLDSSVLLHQLVQLRERRP--QLRLRAVHIHHGLNPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A + C+R ++ V+ + + G+ AAAR+ARY + HA+ ++TA Sbjct: 59 ADGWAAHCQQQCARWQVPLMVIRVQVDAREGGIEAAARQARYRAL--HAQLEAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + + + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGDRRHL---RPLLAQSRQQLECWAHRHQ 173 Query: 186 ISWCEDPSNTDDRFER 201 + W ED SN D R++R Sbjct: 174 LDWIEDDSNQDARYDR 189 >gi|270289038|ref|ZP_06195340.1| MesJ/Ycf62 family protein [Chlamydia muridarum Weiss] Length = 283 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 18/225 (8%) Query: 46 RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAR 103 RS G I F+A+ VD+ RET+ E ++ +C R +I + + + P + + AR Sbjct: 5 RSRG-ISFTAVHVDYGWRETSYQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIAR 63 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLN 162 + RY L K + H DDQ ET+ +R + +G L GM Y Sbjct: 64 QYRYELFYRLCKERLFAGVFLGHHADDQAETIL---KRVFEGAHLGNLKGMARYGTYK-G 119 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR---------FVRDIDL 213 + + RP L + I L I + +D +N D+RF R R+R F ++I Sbjct: 120 ITLLRPLLHITKRQIVEALDNYRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQ 179 Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 L+L + +LR ++ A + + + + + + Q++L Sbjct: 180 PLLFLA-EDSAELREYLDQQAAPFLSQVIDNEIGQFLPVGQELLQ 223 >gi|228476807|ref|ZP_04061455.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126] gi|228251544|gb|EEK10681.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126] Length = 421 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 20/186 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ + Sbjct: 21 ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEHEEAYLRHWAKEHK 77 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +S S K S+ AAR RY K + ++TAH DDQ ET++MR Sbjct: 78 VPFHYSAFSGKFSE------NAARTFRYEFFKRVMKDYEYSALVTAHHADDQAETIFMRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + L+G+ + I RPFL ++ + ED SN + Sbjct: 132 LR--GSRLRHLTGISAIRPFGTG-QIIRPFLHLTKDQLPVTF------HFEDRSNMSLAY 182 Query: 200 ERVRVR 205 R R+R Sbjct: 183 LRNRIR 188 >gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786] Length = 491 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 47/312 (15%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + +L + A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAIGVALSALPHDARIALAYSGGLDSTVLLHA-----AARIAGAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 A + + ++ L + AH V + + G+ A+AR+ARY + A Sbjct: 69 ADAWLAHCAETADALGVRFDAAHVDVPRASGQ---GVEASARDARYRALETMCARHGARA 125 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDI 177 + A DDQ ETV ++ R G G++G+ ++ RP L R + Sbjct: 126 LWLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPQYRPASTDVVRMRPLLHLLRAQL 180 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVA 235 + Q + W +D SN + R+ R +R V L AL F+D R + A A Sbjct: 181 ERYAQQHALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAA 236 Query: 236 M-LIPKYLTVHMRSII-----AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGY 284 L+ + +R++ A+S+D L + LL Y +R + LPG Sbjct: 237 QRLLDDLAAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMR--------SLGLPGA 288 Query: 285 RSMERVMLFLKS 296 S R+ +K Sbjct: 289 -SAARLAEMMKQ 299 >gi|332198875|gb|EGJ12957.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47368] Length = 412 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 TELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|224373408|ref|YP_002607780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia profundicola AmH] gi|223589428|gb|ACM93164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia profundicola AmH] Length = 317 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 29/194 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78 L+A S G DS L L I F V++ R+T+ +EV Y ++ Sbjct: 8 LLAFSAGVDSTALFFWLIE-------NNIPFDIAIVNYHTRKTSNEEVEYAKELAETYNK 60 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ I V+ P+ AR RY E K ++TAH +D+ E M+ Sbjct: 61 KIYIKDCVL------PKFS-EKEARICRYVFFEEIIKKHGYHTLITAHQLNDRFEWFLMQ 113 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 KG GL + ++ + I RPF R +I +FL +R I + D SN D Sbjct: 114 FS-----KGAGLKELIAMGEWEEREFYKIYRPFYNISRNEIVTFLNERGIKYYTDESNFD 168 Query: 197 DRFERVRVRRFVRD 210 +++ R F+RD Sbjct: 169 KKYK----RNFIRD 178 >gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1] Length = 483 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 36/233 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA+SGG DSM L L S K + AI++DH R A E V + Sbjct: 21 PKKVAVALSGGPDSMLLTWLL-------SQCKFEIYAITIDHKYRPEASREALSVYERVK 73 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + S + ARE RY +++ + ++ H DDQLE Sbjct: 74 NWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCYDKDIPVLFLGHHRDDQLE 133 Query: 134 TVYMRSQRDYAEKGMGLSGM--------------CDTILYDLN-LWISRPFLRCRREDIR 178 T R Q + GL+G T N + I RPF ++DI Sbjct: 134 TFIQRLQGN--SSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQVRILRPFWDYDKQDIL 191 Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI------DLHALYLKMKKFQ 224 NI++ DP+N D R +R + DI H+ YL + K Q Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHSPYLLIDKSQ 244 >gi|225181433|ref|ZP_03734876.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1] gi|225167831|gb|EEG76639.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1] Length = 474 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 9/177 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG DS+ LL L + + G I + H LR + E V + L Sbjct: 21 VVVAVSGGPDSLMLLHVLWELSA--KLG-ITLHVAHIHHGLRAESDQEAVAVKKMALGLG 77 Query: 82 IAHSV--VSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + SV V+ N + +TG L A AR+ RY + A + A I TAH DD +ET+ + Sbjct: 78 LPVSVSRVNVGNRRQKTGTSLQATARQVRYGALERIAHRVGAACIATAHHRDDLVETLLL 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R GL G + L + RP R++I ++ + DP+N Sbjct: 138 RLLSGSGLD--GLKGFPMQRVLPSGLSVVRPLYDVTRKEIEAYCRTYKLKPLHDPTN 192 >gi|118497835|ref|YP_898885.1| ATPase [Francisella tularensis subsp. novicida U112] gi|194323808|ref|ZP_03057584.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. novicida FTE] gi|166988059|sp|A0Q7B6|TILS_FRATN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|118423741|gb|ABK90131.1| predicted ATPase of the PP-loop superfamily [Francisella novicida U112] gi|194322172|gb|EDX19654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. novicida FTE] Length = 398 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQPYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|167933096|ref|ZP_02520183.1| putative cell-cycle protein [candidate division TM7 single-cell isolate TM7b] Length = 228 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ A+SGG DS+ LL +LS R + V+H +R + ++ +V + ++ Sbjct: 2 LIAAISGGVDSIVLL----DLLSKR-YKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56 Query: 82 IAHSVVSWKNSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + GL A+ AR+ RY + + +K NA I+TAH DD +ET+ + Sbjct: 57 MRYRQID-----LNLGLHASEEVARDQRYTFLRKLSKEFNAK-IVTAHHADDIIETIAIN 110 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G+ + D I RP + D+ + + + W ED +N+ D Sbjct: 111 LVRGTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDL 161 Query: 199 FERVRVRRFVRDID 212 + R R+R+ ++ ++ Sbjct: 162 YLRNRLRKRIKTLN 175 >gi|85059904|ref|YP_455606.1| cell cycle protein [Sodalis glossinidius str. 'morsitans'] gi|84780424|dbj|BAE75201.1| cell cycle protein [Sodalis glossinidius str. 'morsitans'] Length = 542 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 10/201 (4%) Query: 6 IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDH 60 ++ +R V + V P +L+A SGG DS LL AL ++ + A+ V H Sbjct: 9 VQVLRRHVAARVAPYRALLLAFSGGLDSTVLLDALAALRDGDGLSGGDGAQTLRAVHVHH 68 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + + C R +A +VV G+ AAAR ARY ++ A Sbjct: 69 ALSRHADEWAAHCAQECRRRDVAFTVVHVVVDATSEGIEAAARGARYGALA--AALTQDE 126 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET+ + +R G L+ M Y L + RP L R ++ ++ Sbjct: 127 VLITAQHQDDQAETLLLALKRGSGPAG--LASMAVDAPY-LGHRLVRPLLDFSRGELEAY 183 Query: 181 LLQRNISWCEDPSNTDDRFER 201 R + W ED SNTD RF+R Sbjct: 184 AQARGLHWTEDDSNTDLRFDR 204 >gi|167957510|ref|ZP_02544584.1| putative cell-cycle protein [candidate division TM7 single-cell isolate TM7c] Length = 275 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 23/194 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ A+SGG DS+ LL +LS R + V+H +R + ++ +V + ++ Sbjct: 2 LIAAISGGVDSIVLL----DLLSKR-YKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56 Query: 82 IAHSVVSWKNSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + GL A+ AR+ RY + + +K NA I+TAH DD +ET+ + Sbjct: 57 MRYRQID-----LNLGLHASEEVARDQRYTFLRKLSKEFNAK-IVTAHHADDIIETIAIN 110 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G+ + D I RP + D+ + + + W ED +N+ D Sbjct: 111 LVRGTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDL 161 Query: 199 FERVRVRRFVRDID 212 + R R+R+ ++ ++ Sbjct: 162 YLRNRLRKRIKTLN 175 >gi|254228405|ref|ZP_04921831.1| PP-loop family [Vibrio sp. Ex25] gi|151938993|gb|EDN57825.1| PP-loop family [Vibrio sp. Ex25] Length = 449 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS LL L S I+ A+ V H L A D ++ Sbjct: 35 VVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKCLLWAKQVG 91 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ S+ VS S ++ + AREARY ++++ + +++T DDQLET + Sbjct: 92 ISCSIELVSLDISNGES-IELLAREARYQALTKYIQ--EGDILLTGQHADDQLETFLLAL 148 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +++ + + RP L +R+ I + + W ED SN D R+ Sbjct: 149 KRGSGPKG--LSSMAESMPFSSGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRY 205 Query: 200 ERVRVRRFV 208 +R +R V Sbjct: 206 DRNFLRHCV 214 >gi|160943996|ref|ZP_02091226.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii M21/2] gi|158444672|gb|EDP21676.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii M21/2] Length = 478 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 11 FFVR-SLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ET 65 F +R L+ P H+ AVSGG+DSM LL+ L + FG SA V+H LR ++ Sbjct: 12 FCIREGLLQPGASQHLAAAVSGGADSMALLLLLRQLQP--RFG-YTLSACHVNHGLRGQS 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISE-HAKTINATLI 122 A + +V C+RL + V S P AR RY ++ + I+A I Sbjct: 69 ADRDEAFVRAECARLGVPLRVFHAAELASPPAHAGEDWARRLRYTAFAQLQGQGIDA--I 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 TAHT +DQ ET+ +R R G GL G I ++ RP L R + + Sbjct: 127 ATAHTANDQAETLLLRLAR-----GTGLHGA-GGIRPRRGCYL-RPLLCLSRAETEAVCR 179 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 W D +N D + R R+R Sbjct: 180 AAGQPWVTDETNDTDAYARNRLR 202 >gi|325698021|gb|EGD39902.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160] Length = 425 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IDSQKELD-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFEKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLFTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|297192940|ref|ZP_06910338.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC 25486] gi|197722655|gb|EDY66563.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC 25486] Length = 370 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L++ + ++V +RL Sbjct: 71 VLVACSGGADSMALASAL--AFEARKL-SVRAGGITVDHGLQDGSG---MRAAEVVARLT 124 Query: 82 IAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 H ++ + + + G AAAR+ARYA + + A+ A ++ HT DDQ ETV + Sbjct: 125 AMHLDPVEAIAVRVGR-EGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLL 183 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM + RPFL R+ R + +++ +DP N D Sbjct: 184 GLARGSGIR--SLSGMA--AVSGTAGRYRRPFLHIDRQTARKACMVQSLPVWDDPHNADP 239 Query: 198 RFERVRVR 205 + R R+R Sbjct: 240 AYTRSRLR 247 >gi|168484297|ref|ZP_02709249.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1873-00] gi|172042410|gb|EDT50456.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1873-00] Length = 425 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 TELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|322377896|ref|ZP_08052384.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334] gi|321281072|gb|EFX58084.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334] Length = 425 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 20/197 (10%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F++ + H +++A+SGG DSM L L + + +I+ V+H R + E Sbjct: 10 FLKRGYFKKHTKVVLALSGGLDSMFLFKVLSTYQEEL---EIELILAHVNHKQRVESDWE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + + ++ + A AR+ RY E K AT ++TAH D Sbjct: 67 EKELRKLAAEAELPIYISNFSGEFSE----ARARDFRYDFFQEVMKKTGATALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ+ET+ MR R + LSG+ + ++ D+ + RPFL+ ++D S I Sbjct: 123 DQVETILMRLIR--GTRLRYLSGIKEKQVVGDIEMI--RPFLQFHKKDFPS------IFH 172 Query: 189 CEDPSNTDDRFERVRVR 205 ED SN ++ + R R+R Sbjct: 173 FEDISNQENHYFRNRIR 189 >gi|270264801|ref|ZP_06193065.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13] gi|270041099|gb|EFA14199.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13] Length = 441 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 15/192 (7%) Query: 14 RSLVYPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 R L H+LVA SGG DS + LL+ L R + ++ A+ V H L A + V Sbjct: 17 RQLGTKRHLLVAFSGGLDSSVLLHLLVGLR-----RQWPDLQLRAVHVHHGLSAFADEWV 71 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFD 129 + C+ ++ V ++ + L AR A S A T+ A +++TA D Sbjct: 72 AHCQRQCAAWQLPLVV---QHVQVDGRLGGIEAAARAARYSAFAATLAADEVLLTAQHLD 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET + +R G LS M N + RP L R + + Q ++W Sbjct: 129 DQCETFLLALKRGSGPAG--LSAMAAQASLGSNP-LLRPLLGMSRLQLEDYAQQHQLTWI 185 Query: 190 EDPSNTDDRFER 201 ED SN D RF+R Sbjct: 186 EDDSNQDPRFDR 197 >gi|259907561|ref|YP_002647917.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96] gi|224963183|emb|CAX54667.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96] gi|283477401|emb|CAY73317.1| cell cycle protein [Erwinia pyrifoliae DSM 12163] Length = 433 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R ++ A+ + H L + Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRPH--LQLRAVHIHHGLSQL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A D + C R ++ VV + G+ AAAR+ARY + EH I ++TA Sbjct: 59 ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREH--LIAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173 Query: 186 ISWCEDPSNTDDRFER 201 ++W ED SN D R++R Sbjct: 174 LNWIEDDSNQDARYDR 189 >gi|187777491|ref|ZP_02993964.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC 15579] gi|187774419|gb|EDU38221.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC 15579] Length = 468 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 15/190 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77 I+V VSGG DSM LL L + + I + I+ H +R E+ DE +YV + C Sbjct: 21 IIVGVSGGPDSMCLLHMLCLLKDELRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYM 77 Query: 78 SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L + + G+ +A REARY + K + A I TAH +DQ ETV Sbjct: 78 NNLGFFSKTIDMNKMAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G GL G+ ++I RP + RE+I + + ++ D +N Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDGVYI-RPLINVLRENIEYYCEKYKLNPRIDKTNL 191 Query: 196 DDRFERVRVR 205 + R ++R Sbjct: 192 QSIYTRNKIR 201 >gi|332198668|gb|EGJ12751.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41317] Length = 425 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFKKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|307153268|ref|YP_003888652.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822] gi|306983496|gb|ADN15377.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822] Length = 322 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 19/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSD---V 76 +LVAVSGG DS+ LL L + S + + + DH A D V+ ++ + Sbjct: 26 LLVAVSGGQDSLCLLKLLVDLQSKWEW---ELAIAHCDHGWPTDAGMSDHVQQIAQSWGI 82 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L+ AH + K ++ AAAR+ RY + E A +L++TAHT D+ ET Sbjct: 83 PYYLKTAHHL---KETE------AAARKWRYQALIEIATEQGFSLVVTAHTKTDRAETFL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G LS + N+W+ RP L R + F Q N+S ED N + Sbjct: 134 YNLIRGAGTDG--LSSLTWVRSLSENIWLVRPLLEISRSETYQFCQQFNLSIWEDILNQN 191 Query: 197 DRFERVRVR 205 ++ R R+R Sbjct: 192 LKYARNRIR 200 >gi|222823298|ref|YP_002574871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter lari RM2100] gi|222538519|gb|ACM63620.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter lari RM2100] Length = 318 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL+ L+A S GSDS L L + I F +++ R+ + E + Sbjct: 4 ESLLKNKKNLLAFSHGSDSSALFFMLLN-------KNIDFDLALINYKTRKNSDKEEQSA 56 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ + + +K + A AR RY E K ++ AH +D+ E Sbjct: 57 KELAKKYN--KKIFVKIATKIEKNFEANARAVRYEFFDEICKKYKYENLILAHNLNDKFE 114 Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 M+ KG G + + N I RP + +++I +FL + NI + D Sbjct: 115 WFLMQFS-----KGAGFVELLGFKAVEKKENFIIVRPLINTSKDEILNFLKKENIKYFYD 169 Query: 192 PSNTDDRFERVRVRR 206 SN D+++ R +R+ Sbjct: 170 ESNDDEKYFRNFIRK 184 >gi|154151660|ref|YP_001405278.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|154000212|gb|ABS56635.1| PP-loop domain protein [Methanoregula boonei 6A8] Length = 315 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 13/137 (9%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L++P I V +SGG DS LL+ L +L ++K AI+VD + D ++ Sbjct: 53 LIHPGDRIAVGLSGGKDSTALLVILSRLLP--GLPEVKIVAITVDEGIAGYRSDTIKSAE 110 Query: 75 DVCSRLRIAHSVVSWKN---SKPQTGLMAAAREA-------RYALISEHAKTINATLIMT 124 + RL + H +VS+++ S T L+ ++A R + + A+ AT+I T Sbjct: 111 ALTRRLGVEHRMVSFRDLIGSDLDTLLLGRGKQACTICGILRKKALMDAARDSGATVIAT 170 Query: 125 AHTFDDQLETVYMRSQR 141 H DD+ ++V M + R Sbjct: 171 GHNLDDEAQSVLMNALR 187 >gi|332071333|gb|EGI81828.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17545] Length = 412 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|254457083|ref|ZP_05070511.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1] gi|207085875|gb|EDZ63159.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1] Length = 333 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 20/187 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG+DS L L IKF V++ R + EV Y ++ S+ + Sbjct: 16 LLAFSGGADSTALFFLLLK-------QNIKFDIAIVNYNERVQSIKEVEYAKELASKYNL 68 Query: 83 A-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H++VS K SK + ARE RY + ++TAH D+ E + M+ Sbjct: 69 ECHTLVSPKISK---NFESKAREIRYDFFEKLISEYGYDNLLTAHHLGDRFEWMLMQFC- 124 Query: 142 DYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 KG G ++GM + + RP L ++++ +L + NI + ED +N ++ Sbjct: 125 ----KGAGCAEIAGMQKVQQREFYTLV-RPLLHLDKQELYEYLGRDNIKYFEDETNLNET 179 Query: 199 FERVRVR 205 +R R Sbjct: 180 IKRNSFR 186 >gi|317502958|ref|ZP_07961048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella salivae DSM 15606] gi|315665924|gb|EFV05501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella salivae DSM 15606] Length = 448 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 92/374 (24%), Positives = 157/374 (41%), Gaps = 53/374 (14%) Query: 1 MFLSPIESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M S + V+ F+ L+ P L+A+SGG DS+ LL R ++ + + Sbjct: 1 MLSSFAQKVKAFIAENQLLQPESTYLLALSGGCDSVALL---------RIMIELNYHVAA 51 Query: 58 VDHC---LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYA 108 V HC LR E+ +DE+ + ++C L++ V + S + AARE RY Sbjct: 52 V-HCNFQLRNAESKRDEM-FCEELCRSLKVPFHRVYFDTKAYASLHHVSIEMAARELRYD 109 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + K I+A I+ AH DD +ET + R G G+ G+ + N I RP Sbjct: 110 YFEKLRKDISADDILVAHHQDDNIETALLNLIR-----GTGIQGLLG--MKPKNGHIIRP 162 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSN-------TDDRFERVRVRRFVRDIDLHALYLKMK 221 L R++I +L + + D SN R E + + + + + +K Sbjct: 163 LLSVSRKEIEQYLSSIHQDYVTDSSNLVADVMRNKIRLEVIPLLKTLNPSVSDNISTTIK 222 Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN--IDSTLLFYLLRVSAAICGGQI 279 + +N+A+ + ++V+ ++ IAI+ L + + Y + + + QI Sbjct: 223 HLNEASNVLNSALKDGQKRVVSVYKQNQIAINIKALQKEVSPEYILYSVLSNYSFSSAQI 282 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETT- 336 L +GKR +V DR + A R PT ++ PEE Sbjct: 283 ENIAQS------LNASTGKRWYSKTHELVKDRETLLI----ATRTQPTTKVLRVPEEGLF 332 Query: 337 VWDGRYQFQ-NLSD 349 VW+ +F+ NLS+ Sbjct: 333 VWNEHIKFKINLSE 346 >gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216] gi|167659086|gb|EDS03216.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216] Length = 448 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 33/196 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCS 78 IL+ VSGG DSM +L S+ + + V HC LR +E + Sbjct: 23 ILLTVSGGVDSMVML----SLFVRSGY------RVGVAHCNFQLRGVESEE----DEELV 68 Query: 79 RLRIAHSVVSWKNSK-------PQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 R V W N + +TG + AAR RYA E ++ T++ AH D Sbjct: 69 RREAEKYGVPWYNKRFDTKGEMERTGESMEMAARRLRYAWFDELSREHGYTVVAIAHHID 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ R G GL G+ + L RP + R+DI + + ++I + Sbjct: 129 DSIETFFINLLR-----GTGLRGLTGITTHAGKL--IRPLMFASRKDILEYAVAQHIPYR 181 Query: 190 EDPSNTDDRFERVRVR 205 ED SN ++ R ++R Sbjct: 182 EDSSNRSTKYLRNKIR 197 >gi|310764931|gb|ADP09881.1| tRNA(Ile)-lysidine synthase [Erwinia sp. Ejp617] Length = 433 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 7/196 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R ++ A+ + H L + Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRPH--LQLRAVHIHHGLSQL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A D + C R ++ VV + G+ AAAR+ARY + EH I ++TA Sbjct: 59 ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREH--LIAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173 Query: 186 ISWCEDPSNTDDRFER 201 ++W ED SN D R++R Sbjct: 174 LNWIEDDSNQDARYDR 189 >gi|168493989|ref|ZP_02718132.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC3059-06] gi|183575851|gb|EDT96379.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC3059-06] Length = 425 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|148984555|ref|ZP_01817843.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71] gi|147923332|gb|EDK74446.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71] gi|301799160|emb|CBW31672.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae OXC141] Length = 425 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|330444537|ref|YP_004377523.1| PP-loop type ATPase [Chlamydophila pecorum E58] gi|328807647|gb|AEB41820.1| PP-loop type ATPase [Chlamydophila pecorum E58] Length = 247 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ A+ Y+ +C RL+ Sbjct: 36 IIVALSGGKDSLSLLLMLKAI-SGRGFPELDLHAVNISGKYSCGAEVNTHYLIKICDRLQ 94 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I S+VS P+T + +AR L+ + AK I AT I H DD ++T M Sbjct: 95 IPFTSLVS--PYAPETPECYSCSQARRRLLFQAAKEIGATAIAFGHHRDDLVQTTLMNLL 152 Query: 141 RDYAEKGM 148 GM Sbjct: 153 HKAEFSGM 160 >gi|289642580|ref|ZP_06474722.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca glomerata] gi|289507575|gb|EFD28532.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca glomerata] Length = 620 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%) Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A + A+ ++ HT DDQ ETV +R R + L+GM L+ I RP L Sbjct: 122 DAAGQLRASALLLGHTLDDQAETVLLRLARGSGTR--SLAGMP-----RLDGVIRRPLLD 174 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 RR R L ++ +DP+N D+ F R RVR V Sbjct: 175 VRRSATRDACLAEGLTPWDDPTNADEAFARARVRHRV 211 >gi|148988915|ref|ZP_01820330.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73] gi|147925726|gb|EDK76802.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73] Length = 425 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|225853622|ref|YP_002735134.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae JJA] gi|254789051|sp|C1CH91|TILS_STRZJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225724064|gb|ACO19917.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae JJA] gi|332199078|gb|EGJ13159.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47901] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|149020169|ref|ZP_01835143.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72] gi|147930847|gb|EDK81828.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228] Length = 464 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 18/198 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L+ + IL+AVSGG DS+ +L + + KI+ + +DH R+ +K E ++ Sbjct: 15 LLNSSRILLAVSGGPDSLAMLDLFDKLKEEL---KIEIAVAHLDHMFRKESKSEADFIER 71 Query: 76 VCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + I S + + PQ AAAR+ R+ N L+ AH Sbjct: 72 FAKKRGI--QFFSKRVNLPQIIKTNKVSAEAAARQERFTFFKNIIAKENFDLLALAHHKG 129 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ ETV + R G GL G+ L L + P L +++I ++ Q+ +S Sbjct: 130 DQAETVLLNLFR-----GCGLKGLGGIELQAKFKELELIHPMLIFTKKEILAYCQQQKLS 184 Query: 188 WCEDPSNTDDRFERVRVR 205 D SN ++ + R +R Sbjct: 185 PSFDSSNQENIYSRNIIR 202 >gi|296113823|ref|YP_003627761.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4] gi|295921517|gb|ADG61868.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4] Length = 451 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLHRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 SRNQISQFAKAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224 >gi|221230959|ref|YP_002510111.1| ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC 700669] gi|254789050|sp|B8ZJI9|TILS_STRPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|220673419|emb|CAR67877.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC 700669] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|323165890|gb|EFZ51672.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei 53G] Length = 193 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72 R L+ ILVA SGG DS + LH ++ R+ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ Sbjct: 64 CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSG 152 ET + +R G+ G Sbjct: 122 ETFLLALKRGSGPAGLSAMG 141 >gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10] gi|150843338|gb|EDN18531.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10] Length = 627 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 18/146 (12%) Query: 24 VAVSGGSDSMGL----------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +AVSGG DSM L I S GKI F A+ V+H +R+ + +E + V Sbjct: 38 LAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKIDFRAVIVNHGVRDGSLEEAQKV 97 Query: 74 SDVCSRLRIAHSVVS--WK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V L + +++ WK N + AR+ R+ I ++ + + + I+ H Sbjct: 98 MGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISSILLGHH 157 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGM 153 DDQ ETV MR + +G+GL G+ Sbjct: 158 ADDQAETVLMRLAK--GARGVGLLGI 181 >gi|22299159|ref|NP_682406.1| hypothetical protein tlr1616 [Thermosynechococcus elongatus BP-1] gi|61217355|sp|Q8DIH2|TILS_THEEB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22295341|dbj|BAC09168.1| ycf62 [Thermosynechococcus elongatus BP-1] Length = 344 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 15/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG DS+ L L L + + A+ DH R + +V + + Sbjct: 25 ILIALSGGQDSVCLTRLL---LDLQPHWQWSLVAVHCDHRWRADSTANANFVQQLAQKWH 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + VVS P+T AAAR RY + AK ++ T ++TAHT D+ E++ + R Sbjct: 82 LPCEVVS-APDLPKTE--AAARSWRYQVFESVAKALDCTHVVTAHTQSDRAESLLLHLLR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + G+ T+L +L + RP L R +F + +D +N + Sbjct: 139 GTSPDGLA------TLLPSRSLGAIQLVRPLLGMTRAQTAAFCQAYGLPIWQDETNHNLE 192 Query: 199 FERVRVR 205 + R R+R Sbjct: 193 YRRNRLR 199 >gi|148997947|ref|ZP_01825460.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70] gi|168491781|ref|ZP_02715924.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC0288-04] gi|169834329|ref|YP_001693445.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Hungary19A-6] gi|307066647|ref|YP_003875613.1| putative ATPase [Streptococcus pneumoniae AP200] gi|226695548|sp|B1I6Y3|TILS_STRPI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147755957|gb|EDK63000.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70] gi|168996831|gb|ACA37443.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Hungary19A-6] gi|183574048|gb|EDT94576.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC0288-04] gi|306408184|gb|ADM83611.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus pneumoniae AP200] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|148993574|ref|ZP_01823045.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68] gi|149003152|ref|ZP_01828061.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69] gi|149007705|ref|ZP_01831314.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74] gi|168487652|ref|ZP_02712160.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1087-00] gi|168489346|ref|ZP_02713545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae SP195] gi|225860057|ref|YP_002741566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Taiwan19F-14] gi|237651091|ref|ZP_04525343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CCRI 1974] gi|237821203|ref|ZP_04597048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CCRI 1974M2] gi|298229478|ref|ZP_06963159.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255106|ref|ZP_06978692.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501801|ref|YP_003723741.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae TCH8431/19A] gi|307126185|ref|YP_003878216.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B] gi|254789053|sp|C1CNP4|TILS_STRZT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147758893|gb|EDK65889.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69] gi|147760700|gb|EDK67672.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74] gi|147927795|gb|EDK78817.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68] gi|183569575|gb|EDT90103.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1087-00] gi|183572160|gb|EDT92688.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae SP195] gi|225727017|gb|ACO22868.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Taiwan19F-14] gi|298237396|gb|ADI68527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptococcus pneumoniae TCH8431/19A] gi|306483247|gb|ADM90116.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B] gi|327388996|gb|EGE87344.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA04375] gi|332071714|gb|EGI82207.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17570] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|168576121|ref|ZP_02722026.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae MLV-016] gi|183578020|gb|EDT98548.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae MLV-016] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|225855746|ref|YP_002737257.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae P1031] gi|254789052|sp|C1CN76|TILS_STRZP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225726142|gb|ACO21994.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae P1031] Length = 425 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|332077819|gb|EGI88278.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41301] Length = 412 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|311748470|ref|ZP_07722255.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1] gi|126576986|gb|EAZ81234.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1] Length = 439 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 23/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81 L+A SGG DS+ L LH F V+ LRE D + +V ++ + Sbjct: 22 LLACSGGLDSVCLGTLLHQ-------SGFSFEVAHVNFHLREKESDGDELFVKNLAEQWN 74 Query: 82 I---AHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 H ++ ++ K T + AAR+ RY + K N I+ AH DDQLET+ Sbjct: 75 APFHVHQADTYSFVEDHKVSTQM--AARDIRYEWFEQIRKERNLAGILLAHHEDDQLETI 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G G+ G+ + + + RP L R +I F ++W ED SN Sbjct: 133 FLNLLR-----GTGIEGLYG--MAEKRGKLIRPLLPFSRAEILEFATAMELAWREDSSNK 185 Query: 196 DDRFERVRVR 205 ++R ++R Sbjct: 186 STDYKRNKLR 195 >gi|262393537|ref|YP_003285391.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25] gi|262337131|gb|ACY50926.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25] Length = 436 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++A SGG DS LL L S I+ A+ V H L A D ++ Sbjct: 22 VVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKCLLWAKQVG 78 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ S+ VS S ++ + AREARY ++++ + +++T DDQLET + Sbjct: 79 ISCSIELVSLDISNGES-IELLAREARYQALTKYIQ--EGDILLTGQHADDQLETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +++ + + RP L +R+ I + + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAESMPFSSGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRY 192 Query: 200 ERVRVRRFV 208 +R +R V Sbjct: 193 DRNFLRHCV 201 >gi|296122267|ref|YP_003630045.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776] gi|296014607|gb|ADG67846.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776] Length = 375 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 20/217 (9%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIA------LHSVLSDRSF-GKIKFSAISVDHC 61 V+ V S + +++AVSGG DS+ LL L D F K + +H Sbjct: 28 VKSCVSSKRESSRLVMAVSGGIDSLALLHGFLWVSQLDEWRRDHGFPEKSDWLIAHFNHQ 87 Query: 62 LRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGL---------MAAAREARYALIS 111 +R A DE +V + + ++ H + + S+ G A R +RY + Sbjct: 88 VRGKASDEDAEWVKQLAVQEQL-HVRIGDRQSEAGQGAGEIDHASISEEALRRSRYDFLR 146 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A A I+ AH DDQ ETV R GL+GM + + +L + RP L Sbjct: 147 RVAGEHQAKCIVLAHHADDQAETVLHHLLR--GSSFSGLAGMRRSQPFKPSLTLERPLLS 204 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + +R FL++ W ED +N + + R +R+ V Sbjct: 205 LNKSTLRQFLVEIGQDWREDGTNNETVWTRNALRQLV 241 >gi|149013373|ref|ZP_01834082.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75] gi|182682980|ref|YP_001834727.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14] gi|194398531|ref|YP_002036732.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54] gi|303254912|ref|ZP_07340997.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455] gi|303259737|ref|ZP_07345713.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293] gi|303262204|ref|ZP_07348149.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292] gi|303265400|ref|ZP_07351307.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397] gi|303266052|ref|ZP_07351946.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457] gi|303268460|ref|ZP_07354254.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458] gi|226695547|sp|B5E578|TILS_STRP4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695549|sp|B2IQZ8|TILS_STRPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147762896|gb|EDK69844.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75] gi|182628314|gb|ACB89262.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14] gi|194358198|gb|ACF56646.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54] gi|301800984|emb|CBW33645.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae INV200] gi|302598183|gb|EFL65244.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455] gi|302636844|gb|EFL67334.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292] gi|302639289|gb|EFL69748.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293] gi|302641961|gb|EFL72314.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458] gi|302644356|gb|EFL74609.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457] gi|302645077|gb|EFL75317.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397] Length = 425 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|78777932|ref|YP_394247.1| tRNA(Ile)-lysidine synthetase-like [Sulfurimonas denitrificans DSM 1251] gi|78498472|gb|ABB45012.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 329 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 18/182 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG+DS L +L+ S I F V++ +RE ++DEV Y ++ + I Sbjct: 16 LLAFSGGADSSALFF----LLTQES---IPFDIAIVNYGIREQSRDEVAYAKELSAANNI 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K + A ARE RY S+ + + ++TAH D+ E M+ Sbjct: 69 TCHI--YNAPKIEQNFEAKAREIRYEFFSKLSLENSYENLLTAHHLGDRFEWFLMQFC-- 124 Query: 143 YAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG G ++GM ++ + I RP L + ++ +L + + ED SN D+ Sbjct: 125 ---KGAGCAEIAGM-QSVQKRGSYTIIRPLLHLEKRELIEYLHRIKARYFEDESNLDESI 180 Query: 200 ER 201 +R Sbjct: 181 KR 182 >gi|317133212|ref|YP_004092526.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3] gi|315471191|gb|ADU27795.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3] Length = 457 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +L A SGG+DS LL H + + R ++ A ++H LR E +DE +V C Sbjct: 19 VLAAFSGGADSTALL---HLLCALREEWGLRVFAAHLNHGLRGEEADRDEA-FVRARCVE 74 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V V + ++ R RYA +E A+ + A I TAHT D +ET+ Sbjct: 75 WGVPCFVRRTDVRAEAARTGESEELCGRRLRYAFFAEQAEALGAK-IATAHTLSDSVETM 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL+G+ N I RP + R ++ + +++ D +N Sbjct: 134 LLNLAR-----GTGLAGLRGIPPVRGN--IVRPLIETTRAEVEVYCAAHGLNYVTDSTNF 186 Query: 196 DDRFERVRVR 205 + R R+R Sbjct: 187 SRAYGRNRIR 196 >gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str. Jelinkova 176] gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str. Jelinkova 176] Length = 427 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 16/186 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH+ I + V+H R+ ++ E Y+ + Sbjct: 22 VLIAVSGGVDSMNLLHFLHTFKRQLD---ISIAIAHVNHKQRKESELEEDYLKKWAEQHD 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + +K + + AR+ RY + T ++TAH DDQ+ETV+MR R Sbjct: 79 IPIFIDYFKGNFSEQ----RARDFRYQFFKRIMVQGDYTALVTAHHADDQVETVFMRLIR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L+G+ + + I RPFL + D+ N ED SN + R Sbjct: 135 GSLLR--YLAGIKEVQPFSGGQLI-RPFLHFHKNDL------PNPYHFEDSSNLGLDYFR 185 Query: 202 VRVRRF 207 RVR F Sbjct: 186 NRVRNF 191 >gi|120610995|ref|YP_970673.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1] gi|120589459|gb|ABM32899.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1] Length = 347 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 64/246 (26%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80 VA+SGG+DS LL A + R G++ A+ V H L+ A + +C RL Sbjct: 20 VALSGGADSTALLHAC----AQRWPGQVH--ALHVHHGLQAAADGFETHCRALCGRLGVP 73 Query: 81 -RIAH-SVVSWKNSKPQTGLMAAAREARYALISEHA------------------------ 114 RIA P+ AAR+ RY + + A Sbjct: 74 LRIARVDARHAGGESPED----AARQRRYEALRDLAGGQQGAHQAGTDGVMPEMEAGQGG 129 Query: 115 -------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 + + A++ + H DDQ+ETV + R G G++G+ + Sbjct: 130 PGGDGDPDRPAAGRPVLASVALAQHA-DDQVETVLLALSR-----GAGVAGLAAMPAFWR 183 Query: 162 NLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 I RP L D+R++L R W EDP+N D+R+ R R+R + L AL Sbjct: 184 RGGIDWHRPLLDVAGADVRAWLTARGEGWVEDPTNADERYTRNRIRAGL----LPALQAA 239 Query: 220 MKKFQD 225 +F+D Sbjct: 240 FPQFRD 245 >gi|119509008|ref|ZP_01628159.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414] gi|119466174|gb|EAW47060.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414] Length = 333 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ L+ L + + + + HC D S V + Sbjct: 26 LLVAVSGGQDSLCLIKILLDLEPKWGWD------LGIAHCDHRWRTDSEANASHVEKLAK 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ AAAR RYA +S A+ N I+T HT D+ ET+ R Sbjct: 80 IWGVSFYLATAREPLNSEAAARNWRYAALSAIAQANNYQYIVTGHTASDRAETLLYNLMR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G GL + ++ + RP L R F + ++ ED +N D ++ R Sbjct: 140 GTG--GDGLQALTWQRPLTADICLVRPLLEITRTQTEEFCQEFHLPIWEDSTNLDVKYAR 197 Query: 202 VRVRR 206 R+R+ Sbjct: 198 NRIRQ 202 >gi|77457345|ref|YP_346850.1| hypothetical protein Pfl01_1118 [Pseudomonas fluorescens Pf0-1] gi|123605783|sp|Q3KH95|TILS_PSEPF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|77381348|gb|ABA72861.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens Pf0-1] Length = 442 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 8/189 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +H +A SGG DS LL L + ++S + SAI V H L+ A + VC Sbjct: 23 SHWRIAFSGGLDSTVLLHLLAKLAKNQSIPAL--SAIHVHHGLQAAADAWPAHCQAVCEE 80 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + V + + Q G + A T +++T DDQ ET+ R Sbjct: 81 LAVPLQV---QRVQVQPGASVERAARDARYAAFSAATQANDVLLTGQHRDDQAETLLFRL 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G LSGM T + RP L R ++ ++ + W EDPSN D +F Sbjct: 138 LRGAGVRG--LSGMPATRALGQGS-LVRPLLDVTRAELEAYARDHGLRWIEDPSNQDRQF 194 Query: 200 ERVRVRRFV 208 R +R + Sbjct: 195 SRNYLRHQI 203 >gi|331265449|ref|YP_004325079.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5] gi|326682121|emb|CBY99737.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5] Length = 425 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F++ + H +L+A+SGG DSM L L + + G I+ V+H R + Sbjct: 10 FLQKEYFKKHSKVLLALSGGLDSMFLYHLLSTY--QKELG-IELILAHVNHKQRNESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ A ARE RY + K AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKDAGATALITAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ + + D + I RP L ++D FL I Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKEGQVVD-GIEIIRPLLNFHKKD---FL---PI 170 Query: 187 SWCEDPSNTDDRFERVRVR 205 + ED +N + + R R+R Sbjct: 171 AHFEDQTNQESTYFRNRIR 189 >gi|308175886|ref|YP_003915292.1| tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117] gi|307743349|emb|CBT74321.1| putative tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117] Length = 308 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 +F A+ VDH L+ + + C L + ++S + P A+AR+ARY Sbjct: 44 RFGAVIVDHSLQAGSAQAAQRAGQQCRELGLNPVLISEVETSPDE---ASARDARYQAFD 100 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFL 170 + +A +M AHT DDQ E V + R + L+GM Y RP L Sbjct: 101 QALAQFDADTLMLAHTRDDQAEQVLLGLVRGSGTR--SLAGMPAQRGAY------RRPLL 152 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R I + +DPSN D ++R +R + Sbjct: 153 ELSRAQTEEICRHAGIEYWDDPSNADTGYKRNLIRHRI 190 >gi|42523405|ref|NP_968785.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100] gi|61216531|sp|Q6MLS8|TILS_BDEBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39575611|emb|CAE79778.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100] Length = 316 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA+SGG+DS+ LL +L V G F + +E K+ + +C +L Sbjct: 28 ILVALSGGTDSVALLRSLTKVHKKNLLGACYFH--HGEDSNQEYRKEAQEFCEKLCKKLE 85 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + + + +K + A RE RY + K L+ T H DD LET +R Sbjct: 86 IEFYPLRASQLAKSE----AEYRELRYEALDRLKKEQGFELVATGHHRDDLLETRLIRLI 141 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G G G ++ L + RP L +++++ +L + + EDP+N Sbjct: 142 R-----GTGAQGFA--AMHVLRDGLFRPLLEISKKELKKYLREERLRSFEDPTN 188 >gi|317052478|ref|YP_004113594.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5] gi|316947562|gb|ADU67038.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5] Length = 442 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 80/191 (41%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DSM LL L + + K+ ++H LR E ++ + R V C RL Sbjct: 25 MVVAVSGGVDSMVLLHLLAKIQPEL---KLNLVVAHLEHGLRGEESRADARLVIQTCERL 81 Query: 81 RI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQLET 134 I A V + AR RY + A I TA T DD LE Sbjct: 82 GIPCYARFVDEHFWQRQAGNFQDKARALRYTFFRQVGTDFFSGRAFAIATAMTQDDCLEK 141 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++M R + G DT+ RP +E + ++ + ISW ED SN Sbjct: 142 IFMDILRGRSLLGSLSHQQPDTL---------RPLRTISKEALIAYATGQQISWREDTSN 192 Query: 195 TDDRFERVRVR 205 D + R RVR Sbjct: 193 HQDSYLRNRVR 203 >gi|291460211|ref|ZP_06599601.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417158|gb|EFE90877.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str. F0262] Length = 351 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 26/199 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 IL+A+SGG+DS+ LL+ L + + SF A V H +R + A+ ++ + ++ R Sbjct: 23 ILLALSGGADSVYLLLILEKLRGELSF---SLHAAHVQHGIRGKEAERDLEFSREIAERF 79 Query: 81 RIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTI---------NATLIMTAHT 127 +I H + V + K GL AR RY + + I I A Sbjct: 80 KIPFHGIFVNVPEFSRKHHLGLEEGARLLRYRSLRDCLSEIMDKAPERAGGRGKIAVAQH 139 Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQ ETV R +G+ G+ D I+ RP L +E+I S L ++ I Sbjct: 140 GNDQAETVLYHLFRGSGLRGLRGMEAEKDGII--------RPLLPILKEEILSELSEKGI 191 Query: 187 SWCEDPSNTDDRFERVRVR 205 + ED +N D + R R+R Sbjct: 192 AHREDSTNRDLSYARNRIR 210 >gi|222152147|ref|YP_002561307.1| hypothetical protein MCCL_1904 [Macrococcus caseolyticus JCSC5402] gi|222121276|dbj|BAH18611.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 403 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +I VAVSGG DSM LL + RS + + V+H LR+ +++E + C+ Sbjct: 10 NIGVAVSGGVDSMVLLDKIR-----RSGCFKQLYVLHVNHQLRDVSREEQEMIQRYCTSY 64 Query: 81 RIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V + + AR+ RY AK + + ++TAH DDQ+ET++ R Sbjct: 65 GIELIVYTIPKGTFDLSKSIQHKARKLRYDFFESVAKEKDLSWVLTAHHKDDQMETIFFR 124 Query: 139 --SQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 S R + GM + + + Y +P L + ++ + + + + ED SN Sbjct: 125 LLSNRFTFQPPGMQMI-VKGAVTY------GKPLLNYSKSELYQYAERERVPFMEDESNE 177 Query: 196 DDRFERVRVR 205 + ++ R +R Sbjct: 178 EVKYTRNYIR 187 >gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893] gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893] Length = 721 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGGSDSM L+ + S + A VDH R + E V+D +L Sbjct: 42 IGLAVSGGSDSMALVYLCSQLASQGFIPGLDIKAYIVDHKYRPESSHEAHSVADCVEKLG 101 Query: 82 IAHSVVS--WKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V++ W + + T G AR RY ++ + ++ H DD +ET M Sbjct: 102 VRSKVLTLQWPDGEALTKKGFETQARMLRYQILGKACTKDGVKALLLGHHQDDNVETALM 161 Query: 138 RSQRDYAEKGM 148 R + + + G+ Sbjct: 162 RVSKGHRKLGL 172 >gi|307546377|ref|YP_003898856.1| cell cycle protein [Halomonas elongata DSM 2581] gi|307218401|emb|CBV43671.1| cell cycle protein [Halomonas elongata DSM 2581] Length = 426 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 15/190 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG DS LL+ L S R ++ A+ + H L+ A D R+ ++C RL Sbjct: 25 VWVALSGGLDS-SLLLTLAVEASRRHPRPLR--ALHIHHGLQAAADDFERHCRELCERLG 81 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V V S Q GL AAR ARYA + + TL + H DDQ ET + + Sbjct: 82 VSLCVERVDVDVSGGQ-GLEGAARHARYAAFRRCLEAGD-TLWLAQHR-DDQAETFLLAA 138 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ ++RP+L R + + +R ++W EDPSN Sbjct: 139 LRGAGPRGLA---AMPVERGQAGFRLARPWLGVSRAALEAEAARRGLTWVEDPSNA---- 191 Query: 200 ERVRVRRFVR 209 E V+ R F+R Sbjct: 192 ETVQDRNFLR 201 >gi|260435057|ref|ZP_05789027.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109] gi|260412931|gb|EEX06227.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109] Length = 326 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 23/232 (9%) Query: 10 RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R ++ + P + +L+AVSGG DSM LL L + +G S DH + + Sbjct: 13 RLLMQPQLLPQGSSLLLAVSGGQDSMALLALLQDLAPLHGWG---LSLWHGDHGWHDNSS 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +S C + ++ V + + Q A AR+ RY +++ + A ++T HT Sbjct: 70 RITAELSSWCQQRQLPLQVD--QAAPGQVPSEAKARQWRYERLAQQGRQAGAD-VVTGHT 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFL 181 D+ ET+ ++ R G C L + W+ RP L +R D Sbjct: 127 ASDRAETMLLQLAR-------GSDLACLAALPSVRPLSPEGPWLRRPLLHLQRHDTLQIC 179 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-KMKKFQDLRVKVNN 232 + + EDPSN F R R+R+ V + L AL+ ++ DL +V+ Sbjct: 180 QELALPIWEDPSNQSPEFARNRIRQEVLPV-LEALHPGSTQRMSDLAERVSQ 230 >gi|328883305|emb|CCA56544.1| tRNA(Ile)-lysidine synthetase [Streptomyces venezuelae ATCC 10712] Length = 335 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 7/184 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L++ + V + L Sbjct: 36 VLVACSGGADSMALASAL--AFEARKL-PVRAGGITVDHGLQDGSDTRAGEVVGRMTALG 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S + G AAAR+ARYA + A+ A I+ HT DDQ ETV + R Sbjct: 93 LTPSEAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAILLGHTRDDQAETVLLGLAR 152 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + + RPFL+ R+ +R + + ++ +DP N+D + R Sbjct: 153 GSGIR--SLSGMA--AISGASGRYRRPFLQLDRQTVRKACVAQELAVWDDPHNSDPAYTR 208 Query: 202 VRVR 205 R+R Sbjct: 209 SRLR 212 >gi|161527617|ref|YP_001581443.1| PP-loop domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160338918|gb|ABX12005.1| PP-loop domain protein [Nitrosopumilus maritimus SCM1] Length = 304 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 33/242 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG DS+ LL +H + S +F + I++D + + + V C L Sbjct: 50 VAVAVSGGKDSLALLKIIHEMASSHNF---RIKTITIDEGIPGYRNEALEIVEKFCGELG 106 Query: 82 IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + H V S+KN +T + R I AK + A +I T H Sbjct: 107 VEHKVYSYKNLFELTLDEALDLRENEKTSSCSICGTLRRRAIDHAAKDVGADVIATGHNL 166 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILY------DLNLWISRPFLRCRREDIRSFLL 182 DD L+T + LSG + I + +L +PF +I + Sbjct: 167 DDTLQTFVINM----------LSGDTNKIGWMEPDTSSNSLRKIKPFCEIYESEIVFYAF 216 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +I + +P + R +R F+ ++ +K +Q + ++V+N V K Sbjct: 217 TNDIPFQSEPCPHMNEGIRTEIREFLNSLEKQHSGIKNNLYQSI-LRVSNIVKETNYKEK 275 Query: 243 TV 244 TV Sbjct: 276 TV 277 >gi|290579537|ref|YP_003483929.1| putative cell-cycle protein [Streptococcus mutans NN2025] gi|254996436|dbj|BAH87037.1| putative cell-cycle protein [Streptococcus mutans NN2025] Length = 423 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +IL+AVSGG DSM LL LH +I+ + V+H R A +E Y+ + Sbjct: 21 NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQRPQADEEEIYLKNWARDN 77 Query: 81 RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I +K G+ + AR+ RY K T ++TAH +DQ ETV++R Sbjct: 78 HIPFYTAVFK------GIFSEKKARDFRYTFFKNIMKEHGYTALVTAHHANDQAETVFLR 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+G+ + + N + RPFL+ ++++ NI +D SN + Sbjct: 132 LLR--GSRLRYLTGIKEIQEFG-NGQLIRPFLKFHKKEL------PNIFHFDDDSNQGNS 182 Query: 199 FERVRVR 205 + R R+R Sbjct: 183 YLRNRIR 189 >gi|187931484|ref|YP_001891468.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] gi|226695538|sp|B2SG31|TILS_FRATM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|187712393|gb|ACD30690.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] Length = 398 Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEGFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|170733430|ref|YP_001765377.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3] gi|169816672|gb|ACA91255.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3] Length = 473 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L AHI +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVSVALSGLPPDAHIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + +RL +A S + P+ G+ A ARE RY + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYTALDEMGERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ +++ RP LR R + Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + Q ++W +D SN D R+ R +R V L AL + F+D Sbjct: 182 RYAEQHALTWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224 >gi|86607208|ref|YP_475971.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab] gi|123505003|sp|Q2JRN8|TILS_SYNJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|86555750|gb|ABD00708.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab] Length = 336 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 96/243 (39%), Gaps = 33/243 (13%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-- 70 R L+ P +LVA SGG DS LL L + + I V HC + DE Sbjct: 18 RQLLRPGQRLLVAFSGGQDSFSLLQILRDLQPRWRW------QIFVLHCDHRWSADETAC 71 Query: 71 -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +++ + + H+V + + P A AR RY + + A+T + + T HT Sbjct: 72 AQFLQGWLQQQGLPHAV---ETADPIRWDEAGARAWRYQQLDKWARTWSCEAVATGHTAS 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--------WISRPFLRCRREDIRSFL 181 D+ ET R G G +G+ ++ + L W+ RP L R + F Sbjct: 129 DRAETFLWNLLR-----GTGAAGLV-SLDWQRRLDERDPTSAWLVRPLLGLSRWETEEFC 182 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 Q + D SN D R R+R V YLK L +N A +L ++ Sbjct: 183 RQYQLPVWPDRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEH 236 Query: 242 LTV 244 V Sbjct: 237 ELV 239 >gi|113476777|ref|YP_722838.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101] gi|110167825|gb|ABG52365.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101] Length = 344 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+AVSGG DS+ L L + S + + DH R ++ YV + + Sbjct: 34 ILIAVSGGQDSLCLTKLLLDLQSKWGW---YLAVAHCDHKWRSDSEANANYVKKIAINWQ 90 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + + A AR+ RY ++S+ A N I+T HT D+ ET+ R Sbjct: 91 LPSYV---ETADKIYKSEAEARKWRYQVLSKIALEFNFQYIVTGHTASDRAETLLYNLIR 147 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ ++ + + RP L R +F ++ I ED +N D + R Sbjct: 148 GSGTEGLQALTWQRPLIENFLPLLVRPLLEITRTQTSNFCQEQKIRIWEDSTNQDLHYAR 207 Query: 202 VRVR 205 R+R Sbjct: 208 NRIR 211 >gi|294789627|ref|ZP_06754861.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453] gi|294482428|gb|EFG30121.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453] Length = 427 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 10/185 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS ++ LH + R+ SAI V H L + A + D C + Sbjct: 17 IIVGFSGGLDS---VVLLHLLAMARTQYVFDLSAIHVHHNLSQNADKWADFCLDFCENWK 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ + + + G+ AAAR ARYA+ E+A + + AH DDQ+ET ++ + R Sbjct: 74 IPLTIKYVQVNSEKLGVEAAARAARYAVFREYAGDV----LALAHHRDDQVETFFLAALR 129 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + GL+ M + + +L I+RP L R I + ++ D SN + F R Sbjct: 130 GSGIR--GLAAMAEN-QFSGSLKIARPLLHFSRHQIEQYAQHNQLTHITDDSNDNPIFLR 186 Query: 202 VRVRR 206 +R Sbjct: 187 NWLRH 191 >gi|56708293|ref|YP_170189.1| PP-loop family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670764|ref|YP_667321.1| PP-loop family protein [Francisella tularensis subsp. tularensis FSC198] gi|134301750|ref|YP_001121718.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis WY96-3418] gi|224457415|ref|ZP_03665888.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|254369106|ref|ZP_04985118.1| PP-loop family protein [Francisella tularensis subsp. holarctica FSC022] gi|254370777|ref|ZP_04986782.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875114|ref|ZP_05247824.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|61216407|sp|Q5NFK3|TILS_FRATT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123359434|sp|Q14H05|TILS_FRAT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988060|sp|A4IXE6|TILS_FRATW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54113183|gb|AAV29225.1| NT02FT1257 [synthetic construct] gi|56604785|emb|CAG45864.1| PP-loop family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321097|emb|CAL09247.1| PP-loop family protein [Francisella tularensis subsp. tularensis FSC198] gi|134049527|gb|ABO46598.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis WY96-3418] gi|151569020|gb|EDN34674.1| hypothetical protein FTBG_00586 [Francisella tularensis subsp. tularensis FSC033] gi|157122056|gb|EDO66196.1| PP-loop family protein [Francisella tularensis subsp. holarctica FSC022] gi|254841113|gb|EET19549.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159523|gb|ADA78914.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis NE061598] Length = 398 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77 P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + C Sbjct: 17 PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G GL+G+ Y + + RP L+ + +I F NIS+ D SN Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEGFAKLNNISYIYDDSNE 183 Query: 196 DDRFERVRVRRFV 208 D ++ R +R + Sbjct: 184 DIKYRRNLIRNQI 196 >gi|229816588|ref|ZP_04446887.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM 13280] gi|229807923|gb|EEP43726.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM 13280] Length = 535 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 34/216 (15%) Query: 14 RSLVYPAHILVAVSGGSDSMGL-LIALHSVLS---DRSFGKI---KFSAISVDHCLRETA 66 R A +++ VSGG+DS L L+A L R +I + + V+H LR A Sbjct: 36 RGQALAAPVVLMVSGGADSTALALMACTGELDIDDGRGCARIARERLHVLHVNHHLRGEA 95 Query: 67 KD-EVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN--- 118 D + +V D+C L + H+ + + + L AAAR+ RYA + + ++ Sbjct: 96 SDGDEAFVRDLCECLGLPLCVEHAHFADLDGR---NLEAAARDVRYAAARRYVRELSRQS 152 Query: 119 -----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A I+TAHT D+ ET +M A KG G +G+ +I N+ I RP + Sbjct: 153 GTPRTAARILTAHTASDRAETFFM-----NAIKGSGAAGL-SSIPRRRNI-IVRPLMDRT 205 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 ++ +L W ED SN D + +R FVR Sbjct: 206 HGELVRYLQVAGQPWREDESNRDTSY----LRNFVR 237 >gi|194476912|ref|YP_002049091.1| possible MesJ-like protein [Paulinella chromatophora] gi|171191919|gb|ACB42881.1| possible MesJ-like protein [Paulinella chromatophora] Length = 343 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 6/187 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG DSM L+ L+ + + K +H R + +S S+ Sbjct: 40 LLVAISGGQDSMALIKLLNDL---KRIYKWNLHLWHGNHRWRLESDKITCELSRWASQEL 96 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S ++P A AR+ RY + + A+ +N I+TAHT D+ ET+ + R Sbjct: 97 LPFYTDS---AQPPPNSEAKARQWRYESLKQLAEKLNCHKIVTAHTGSDRAETLLLNIAR 153 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ ++ NL + RP L R D + + + DPSN F R Sbjct: 154 GSNRHGIASLPHIRYLVNSNNLSLVRPLLNFSRLDTAAICQKWKLPIWYDPSNESLYFSR 213 Query: 202 VRVRRFV 208 R+R + Sbjct: 214 NRIRHQI 220 >gi|124514863|gb|EAY56374.1| TRNA(Ile)-lysidine synthetase [Leptospirillum rubarum] Length = 504 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 29/197 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYV 73 P H VA+SGG+DS+ L LH L DR + + +H R E +DE+ + Sbjct: 39 PPHFHVAISGGADSVFLAFLLHLFLEDRH----SLTLVHFNHRTRGKENEEDEIFLRNFA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA----LISEHAKTINATLIMTAHTFD 129 + LRI ++ P+ L R+ RYA L++E+ K I + AH D Sbjct: 95 RHIGRPLRIGILSEPLPDNVPEDFL----RKKRYAFFDTLLTENRKNI----LFLAHHQD 146 Query: 130 DQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ+ET+ M R KG +G+ D ++ RP L ++IR+ L I + Sbjct: 147 DQVETILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLETGADEIRNVLSDHRIPY 199 Query: 189 CEDPSNTDDRFERVRVR 205 D SN + R RVR Sbjct: 200 RIDSSNLQHDYLRNRVR 216 >gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] gi|296179979|gb|ADG96885.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] Length = 330 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 27/194 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYVSD 75 A + VA+SGG+DS+ L AL + A+ VDH L+ +TA + D Sbjct: 35 ARVCVALSGGADSLALTAAL-------AREHTAVEALVVDHGLQPESAQTAARAAQLALD 87 Query: 76 V-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + CS R+ V+ G AR A + + + ++ HT DDQ ET Sbjct: 88 LGCSGSRVLPVTVN--------GAGGLEAAARTARQAALRQAGAGSPVLLGHTLDDQAET 139 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R G G + +D + W RP L RR R+ + + EDP N Sbjct: 140 VLLGLAR-----GSGPRSIQGMRAWD-DPW-GRPLLGVRRAMTRAVCAELGVQPHEDPMN 192 Query: 195 TDDRFERVRVRRFV 208 TD RF R R+R V Sbjct: 193 TDPRFVRARLRAEV 206 >gi|289166919|ref|YP_003445186.1| MesJ/Ycf62 family protein [Streptococcus mitis B6] gi|288906484|emb|CBJ21314.1| MesJ/Ycf62 family protein [Streptococcus mitis B6] Length = 425 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWEEQKLRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D S I ED SN + + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDISNKKNHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|327541838|gb|EGF28350.1| tRNA(Ile)-lysidine synthetase [Rhodopirellula baltica WH47] Length = 397 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 21/204 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRS--------FGKIKFSAISVDHC---LR--ETAKDE 69 LV SGG+DS+ L+ L + ++ S + + V HC LR E+ DE Sbjct: 40 LVGCSGGADSVALIRLLAELWAEESNVLNPANETVTNPVAPLVVAHCNHGLRGEESTADE 99 Query: 70 VRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMT 124 +V +C +L++ + VS N+ G ++ R + R AK + Sbjct: 100 A-FVRQLCDQLQLPLVIHHVSPPNNSATPGPVSDERTLRQIRRDFFERAAKQHGCRYVAV 158 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH+ DDQ ET+ R +GL+G+ + D ++ + RP L+ RR+ +R L + Sbjct: 159 AHSADDQAETMLHHFIRGTGP--LGLAGIAEVSELDTDIVVRRPLLQVRRDTLRDGLREI 216 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 W ED SN + R +R V Sbjct: 217 GQPWREDASNRHTIYTRNWIRHDV 240 >gi|257452690|ref|ZP_05617989.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_5R] gi|317059230|ref|ZP_07923715.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_5R] gi|313684906|gb|EFS21741.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_5R] Length = 444 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVA SGG DS+ L+ L + SF + + + H +R E A + ++ + + Sbjct: 23 ILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQFCLEYARKK 79 Query: 81 RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V S+ Q+ L A R RY E K + I TAH DD LET Sbjct: 80 NLEIIAKKLDVPSYAKENRQS-LEEAGRNLRYKFFQEIRKEKSYHKIATAHHLDDHLETF 138 Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R R + +G+ G+S D I RP +++I +L + I +C D + Sbjct: 139 FFRLLRGSSMEGLAGISRKQGDRI---------RPLRDFEKKEILFYLEEHQIPYCHDKT 189 Query: 194 NTDDRFERVRVR 205 N + + R R+R Sbjct: 190 NEEVEYSRNRIR 201 >gi|225573962|ref|ZP_03782607.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM 10507] gi|225038779|gb|EEG49025.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM 10507] Length = 468 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 15/192 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYVSDV 76 I+ +SGG DSM LL L L R + A+ V+H +R E +DE +Y +D Sbjct: 28 IVAGISGGGDSMALLFLL---LKFRERCGYEVCAVHVNHGIRGDEAFRDETLVTKYCADR 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H V K A R R + + + AH +DQ ET+ Sbjct: 85 NVDCEVFHCSVPEAVKKYGWSEEEAGRILRRQAYEQVLRQWKGNKVALAHHQNDQAETML 144 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ + + + RPFL R +I +L ++ I + D +N Sbjct: 145 HNLSR-----GCGLRGI--RGMLPVQNGMIRPFLCIERREIDHYLKEKKIPYRTDSTNFS 197 Query: 197 DRFERVRVRRFV 208 D++ R R+R+ V Sbjct: 198 DQYIRNRIRKHV 209 >gi|71064744|ref|YP_263471.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4] gi|71037729|gb|AAZ18037.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4] Length = 525 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 21/195 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DS+ L AL L +S + V+H L+ + ++V++ R + Sbjct: 43 IWLACSGGRDSLAL-AALCVQLYQQSRLPFLPQLLHVNHGLQADSDIWAQHVAEWAKRQK 101 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I +++ ++ AAR+ARY ++ + L+ AH DDQ ETV MR Sbjct: 102 IPCTIL---QAQVNGHDEQAARQARYDVMRTQLNQDDVLLL--AHHADDQAETVLMR--- 153 Query: 142 DYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +G GL+G+ + + LW RP+L +R I ++ + +S+ +DP+ Sbjct: 154 --LVQGAGLNGLTGMQPWRVQTQGVHRIVLW--RPWLTIQRASISTYAQRLKLSYIDDPT 209 Query: 194 NTDDRFERVRVRRFV 208 N R +RR + Sbjct: 210 NDGGDNVRSGLRRDI 224 >gi|257466551|ref|ZP_05630862.1| cell cycle protein MesJ [Fusobacterium gonidiaformans ATCC 25563] gi|315917706|ref|ZP_07913946.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium gonidiaformans ATCC 25563] gi|313691581|gb|EFS28416.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium gonidiaformans ATCC 25563] Length = 444 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVA SGG DS+ L+ L + SF + + + H +R E A + ++ + + Sbjct: 23 ILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQFCLEYARKK 79 Query: 81 RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V S+ Q+ L A R RY E K + I TAH DD LET Sbjct: 80 NLEIIAKKLDVPSYAKENRQS-LEEAGRNLRYKFFQEIRKEKSYHKIATAHHLDDHLETF 138 Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R R + +G+ G+S D I RP +++I +L + I +C D + Sbjct: 139 FFRLLRGSSMEGLAGISRKQGDRI---------RPLRDFEKKEILFYLEEHQIPYCHDKT 189 Query: 194 NTDDRFERVRVR 205 N + + R R+R Sbjct: 190 NEEVEYSRNRIR 201 >gi|189499568|ref|YP_001959038.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1] gi|189495009|gb|ACE03557.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1] Length = 334 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 22/191 (11%) Query: 13 VRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAK 67 VR LV H+L AVSGG DSM LL L +V RS K++ ISV HC LR E ++ Sbjct: 18 VRKLVSRREHVLAAVSGGPDSMALLYLLCAV---RSVLKVR---ISVAHCNFQLRGEESE 71 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIM 123 + +V C +L + V + K + + AR RY E + Sbjct: 72 LDEEFVRSECEKLGLECFVRRFDTQKDARRLKKSIEETARIERYGFFHELIAKDGFDRVA 131 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H D ETV R G +SG+ + + + RP L ++ DI ++ + Sbjct: 132 TGHHVSDNAETVLFNLIR-----GSSISGLKG--IRSEHGHVIRPLLLMQKRDITRYIGE 184 Query: 184 RNISWCEDPSN 194 + IS+ D SN Sbjct: 185 KEISYRVDSSN 195 >gi|302535220|ref|ZP_07287562.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C] gi|302444115|gb|EFL15931.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C] Length = 342 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 8/186 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G I+ I+VDH L+ + V + LR Sbjct: 40 VLVACSGGADSMALASAL--AFEAPKLG-IRAGGITVDHGLQVGSDLRAAEVVTRMTALR 96 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + E A + A ++ HT DDQ ETV + R Sbjct: 97 LDPVESVAVRVGREGGPEAAARDARYAALDEAADRLGACAVLLGHTRDDQAETVLLGLAR 156 Query: 142 DYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + LSGM + N + RPFL+ R+ R + +++ +DP N D + Sbjct: 157 GSGIR--SLSGMAEVSGGPGRTNRY-RRPFLQVDRQTARKACMVQSLPVWDDPHNIDPAY 213 Query: 200 ERVRVR 205 R R+R Sbjct: 214 TRSRLR 219 >gi|218245074|ref|YP_002370445.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801] gi|218165552|gb|ACK64289.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801] Length = 326 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 19/190 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79 IL+A+SGG DS+ L L + S + I++ HC + DE +V + Sbjct: 25 ILMAISGGQDSVCLGKLLLDLQSKWGW------KIAIGHCDHRWSYDEGIADHVEKLAQN 78 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + N K AAAR+ RY + E A+ + T ++T HT D+ ET+ Sbjct: 79 WGIPFYLKVANNLKETE---AAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAETLLYNL 135 Query: 140 QRDYAEKGMGLSGMCD-TILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G G+ T +L N+ + RP L R + +F Q ++S ED +N + Sbjct: 136 IR-----GAGTDGLSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLSIWEDAANKN 190 Query: 197 DRFERVRVRR 206 ++ R R+R+ Sbjct: 191 LKYSRNRIRQ 200 >gi|21243487|ref|NP_643069.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306] gi|61217385|sp|Q8PIY5|TILS_XANAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21109046|gb|AAM37605.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306] Length = 440 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 9/191 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+A SGG DS + LH + + + A+ V H L A + C Sbjct: 20 PGPVLLAYSGGMDSS---VLLHLLAARPRYRHAGLRALHVHHGLHADADAWAAHCQRTCD 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L++ +V + ++ +GL A + I + AH DDQ ET +R Sbjct: 77 ALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLR 135 Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A GL+ M LW RP L R D+ ++ + W +DPSNTD Sbjct: 136 ALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAHRLRWIDDPSNTDP 191 Query: 198 RFERVRVRRFV 208 R +R +R V Sbjct: 192 RHDRNFLRSQV 202 >gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1] Length = 451 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224 >gi|213027211|ref|ZP_03341658.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 172 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 7/159 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL A SGG DS LL L VL + AI + H L A VR+ VC R + Sbjct: 16 ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V + G+ A AREARY ++ + ++ TA DDQ ET + +R Sbjct: 74 VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 GLS M + + L + RP LR R+ + + Sbjct: 132 GSGPA--GLSAMGERSPFAGTL-LLRPLLRETRKTLEQW 167 >gi|289620220|emb|CBI53078.1| unnamed protein product [Sordaria macrospora] Length = 789 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 40/169 (23%) Query: 19 PAH--ILVAVSGGSDSMGLLIAL-------HSVLS-----------DRSFGKIKFSAISV 58 P H + A+SGG DSM L HS++S D K++ A+ + Sbjct: 38 PVHRQVACAISGGVDSMALAFLFNRLKQDTHSLISSGPSMEAFRISDNILNKVR--AVII 95 Query: 59 DHCLRETAKDEVRYVSDVCSR-----LRIAHSVVSWK-------NSKPQTGLMAAAREAR 106 DH LRE + +E R V++V L ++W+ + K Q + R+ R Sbjct: 96 DHGLREGSDEEARKVANVIRTKFPDFLYPVIEPINWRSELGPGVDPKTQPNIETLGRKLR 155 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGM 153 Y + ++ NA + TAH DD+ ET+ MR S R Y GL G+ Sbjct: 156 YVAFASACRSYNAVSLFTAHHEDDEYETILMRMISGRGY----RGLQGI 200 >gi|281425843|ref|ZP_06256756.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302] gi|281400104|gb|EFB30935.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302] Length = 449 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 145/357 (40%), Gaps = 62/357 (17%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77 LVA+SGG DS +AL V+ + + I+V HC LR E+ +DE + ++C Sbjct: 26 LVALSGGCDS----VALFRVMIELGY------HIAVIHCNFQLRGEESERDE-HFCEELC 74 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + ++ V + + + AARE RY + K I A I+ AH DD +E Sbjct: 75 NSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQDDTVE 134 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV + R GL G+ N + RP L R DI ++L ++ D S Sbjct: 135 TVLLNLIR--GTSIHGLQGIKPK-----NGHVIRPLLSMTRNDIENYLSSIQQTFITDSS 187 Query: 194 NTDDRFERVRVRR----FVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N +R ++R +R+I+ ++ L K D +NA+ + + V Sbjct: 188 NLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDAAKVFDNALQESVERVTLVRK 247 Query: 247 RSIIAISQDILNID---STLLFYLLRV----SAAICGGQISLPGYRSMERVMLFLKSGKR 299 + D L + L+ +L++ S I SL +GK+ Sbjct: 248 ADRYVVDIDKLEREISPEQTLYSILKIFSFSSVQIENMACSLDA-----------PTGKK 296 Query: 300 GCVSIGRVVIDRR----ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 + VIDR A+ L + V +P Y VWD + +F N++ +I Sbjct: 297 WLSNTHEAVIDRGTLVIASLLNASNKVLKVPETGCY-----VWDDKVKF-NITSHVI 347 >gi|282879019|ref|ZP_06287781.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310] gi|281298854|gb|EFA91261.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310] Length = 441 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ LL L ++ G AI + LR E+ +DE+ + ++C +L Sbjct: 25 LVALSGGADSVCLLRCL------KALG-YHLEAIHCNFRLRGEESDRDEL-FCQELCQKL 76 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I AH + AARE RYA K + A + H DD +ET+ Sbjct: 77 EIPLHLAHFDTRSYAQLHHVSIEMAARELRYAHFKNLCKAMGAGGVCVGHHQDDSVETIL 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G+ G+ T + N +I RP L R++I +L ++ D +N Sbjct: 137 INLVR-----STGIHGL--TGIAPKNDYIYRPLLCVSRKEITDYLKTIQQNYITDSTNLV 189 Query: 197 DRFERVRVR 205 +R ++R Sbjct: 190 PDVQRNKMR 198 >gi|330445162|ref|ZP_08308814.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489353|dbj|GAA03311.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 434 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 L AAREARY +++H + + TLI H+ DDQ+ET + +R G+ + Sbjct: 96 LEQAAREARYNALAKHVQQGD-TLITAQHS-DDQIETFLLALKRGSGPAGLASMPVILPF 153 Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 +L RP L R +I + + W ED SN D+R++R +R Sbjct: 154 AKGTHL---RPLLNVTRAEIEQYGKAHQLEWVEDESNQDERYDRNFIR 198 >gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224 >gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R+ I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 LRDKISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAIENI 224 >gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1] gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8] Length = 457 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 21 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 78 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 79 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 125 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 179 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 180 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 230 >gi|268679075|ref|YP_003303506.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268617106|gb|ACZ11471.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 331 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 24/179 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS L LH I F V++ R +++E Y ++ LR Sbjct: 21 LLAFSGGGDSTALFFLLH-------VKGISFDIAHVNYQTRPQSQEEEAYAKELS--LRF 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ ++ + + AR RY +LI EH TLIM AH DQLE M+ Sbjct: 72 NKNLFTFTCNLKERNFEHHARHVRYEFFESLIHEHGYE---TLIM-AHHLGDQLEWFLMQ 127 Query: 139 SQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 KG GL M ++ I RP L + ++ FL + I + ED SN Sbjct: 128 LC-----KGAGLVEMIGMREWEKREAYTIVRPLLHVSKAHLKDFLEKEKIHFFEDESNA 181 >gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1] gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224 >gi|326566220|gb|EGE16372.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHCWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224 >gi|159904318|ref|YP_001551662.1| ATPase [Prochlorococcus marinus str. MIT 9211] gi|159889494|gb|ABX09708.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9211] Length = 339 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+++SGG DSM LL ++ R + K DH + + + + C+ Sbjct: 35 LLLSISGGQDSMALLKL---IVDLRRLYEWKIFIWHGDHGWHKQSTQIATGLKEWCNNQE 91 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFDDQLET 134 + VS + +K + AAR RY ++ HA+ ++ ++T HT D+ ET Sbjct: 92 L--RFVSERATKEKIHSEQAARNWRYECLTAHAQLLSQQNQSSPCHYVLTGHTSTDRAET 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R G+G T+ + L RP L RED + ++ DPSN Sbjct: 150 LLLNLSRGTHLSGLGSLKSSRTLSGQIKL--VRPLLIFSREDTAQICKEMDLPVWLDPSN 207 Query: 195 TDDRFERVRVRRFV 208 ++ R R R+R V Sbjct: 208 SNMRISRNRIREEV 221 >gi|91223490|ref|ZP_01258755.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01] gi|91191576|gb|EAS77840.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01] Length = 436 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 21/194 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-------RYVS 74 +++A SGG DS LL L S ++ A+ V H L A + + V Sbjct: 22 VVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKCLLWAQQVG 78 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 CS R++ + N+ L+A REARY ++++ + +++T DDQ+ET Sbjct: 79 ISCSIERVSLDI----NNGESIELLA--REARYQALTKYIQ--EGDILLTGQHADDQIET 130 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R KG LS M +++ + + RP L +R+ I + + W ED SN Sbjct: 131 FLLALKRGSGPKG--LSSMAESMPFSCGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESN 187 Query: 195 TDDRFERVRVRRFV 208 D R++R +R V Sbjct: 188 QDTRYDRNFLRHCV 201 >gi|82702932|ref|YP_412498.1| hypothetical protein Nmul_A1809 [Nitrosospira multiformis ATCC 25196] gi|82410997|gb|ABB75106.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 472 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 53/283 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ +A+SGG DS+ LL L + S ++ SA+ V+H + A + ++C Sbjct: 29 HLTIALSGGVDSVVLLDLLVPLASQM---QLPLSAVHVNHGISPNADKWSEFCRNLCQFR 85 Query: 81 RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + K ++ P L AAARE RY + + + I+ A DDQ ET+ ++ Sbjct: 86 NIPLEIARVKVAQGPGISLEAAAREERYRIF----RGLQTDYIVLAQHLDDQAETLLLQL 141 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWIS--------------RPFLRCRREDIRSFLLQRN 185 R KG+ + T+ ++ + RP L R +I + + Sbjct: 142 LRGAGVKGLSAMPVVRTVRKEMGETVPVNSVPALEGRPRLLRPLLDVSRREIEDYARKHA 201 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + W D SN + F R F+R H L+ M+K P Y T Sbjct: 202 LRWITDESNDEISFG----RNFLR----HELFPLMEK--------------RFPAYRTTF 239 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 +R+ +++ S LL L V +A C ++PG +E Sbjct: 240 LRASRHMAE-----ASALLDELAEVDSARC----AVPGKLHVE 273 >gi|116668717|ref|YP_829650.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24] gi|116608826|gb|ABK01550.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24] Length = 376 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 12/192 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVS 74 YP +LVA SGG DS+ L A+ S R + A+ VDH L+ + + Sbjct: 34 YPERVLVACSGGPDSL-ALAAVASYFGRRGHVDGHPVSVGAVVVDHQLQPGSAAVAAQTA 92 Query: 75 DVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 DV L ++ V + + G AAAR+AR+A + E A A +I+ HT DDQ E Sbjct: 93 DVLRDLGLSPVDVRQVDVASTGIGPEAAARDARHAALEEAAAQAGANVILLGHTLDDQAE 152 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V + R + L+GM + + RPFL RR D + DPS Sbjct: 153 QVLLGLARGSGTR--SLAGM-----RPVRGLLLRPFLGLRRADTLEICAVEGLDPWRDPS 205 Query: 194 NTDDRFERVRVR 205 N D F R R R Sbjct: 206 NADPSFARSRTR 217 >gi|329942871|ref|ZP_08291650.1| PP-loop family protein [Chlamydophila psittaci Cal10] gi|332287464|ref|YP_004422365.1| PP-loop family protein [Chlamydophila psittaci 6BC] gi|313848043|emb|CBY17041.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506513|gb|ADZ18151.1| PP-loop family protein [Chlamydophila psittaci 6BC] gi|328815131|gb|EGF85120.1| PP-loop family protein [Chlamydophila psittaci Cal10] gi|328914712|gb|AEB55545.1| PP-loop type ATPase [Chlamydophila psittaci 6BC] Length = 247 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 16/173 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDV 76 A I++A+SGG DS+ LL+ L ++ S R F K+ A+++ C E +K +Y++++ Sbjct: 35 AKIVIALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYSCGSEVSK---QYLANI 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C ++ + +S ++ P+ + + R L+ + AK + AT + H DD ++T Sbjct: 91 CDKIHVPYSSIT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVAFGHHRDDVVQTAL 149 Query: 137 MR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 M + ++A G+ + D + + + I RP + IR F + S Sbjct: 150 MNLLHKAEFA----GMLPVLDMVHFGIT--ILRPLILTPESWIRKFAKESGFS 196 >gi|257438697|ref|ZP_05614452.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165] gi|257198832|gb|EEU97116.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165] Length = 300 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 H+ AVSGG+DSM LL L + +FG +A V+H LR A D + +V C+R Sbjct: 32 HLCAAVSGGADSMALLRVLLELRE--AFG-YPLTACHVNHGLRGEAADRDEAFVRAECAR 88 Query: 80 LRIAHSVVSWKN---SKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETV 135 L + +V + + P AR RYA ++ A I+ I TAHT DQ ET+ Sbjct: 89 LGVPLTVFRPADVGMTVPPHAGEDWARRLRYACFAQLLAGGID--CIATAHTATDQAETL 146 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G GL G + RP L R + + W D +N Sbjct: 147 LFRLAR-----GTGLHGA--GGIRPRRPGYCRPLLGLTRAETEALCAAFGQGWVTDETNE 199 Query: 196 DDRFERVRVR 205 D + R R+R Sbjct: 200 SDAYARNRLR 209 >gi|332184367|gb|AEE26621.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida 3523] Length = 398 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSD 75 + P+HI++ SGG DS +L+ + L I AI ++H L R++ K ++ + Sbjct: 15 ISPSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQ 66 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C R + + + A A + R A + + L++ H DDQ ET Sbjct: 67 TCQRYNLEFISHALDKAPKGESFEAWASKQRMAFFEKIMQQYPKPLLLLGHHQDDQAETF 126 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +++ R G GL+G+ Y + + RP L + +I F NI++ D S Sbjct: 127 LIQAIR-----GSGLAGLAGMPYYKKLHHGGVLRPLLNYTKIEIEEFAKLNNITYIYDDS 181 Query: 194 NTDDRFERVRVRRFV 208 N D ++ R +R + Sbjct: 182 NEDTKYRRNLIRNEI 196 >gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330] Length = 425 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLVDYQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ S + AR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGSFSEN----VARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 +I ED SN + + R R+R Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189 >gi|326568391|gb|EGE18471.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7] Length = 451 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R+ I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 LRDKISQFAKAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAVENI 224 >gi|150005405|ref|YP_001300149.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482] gi|149933829|gb|ABR40527.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482] Length = 417 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL L + F H E + + R+V+++C L Sbjct: 5 VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 58 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + S+ + AARE RY + K +I AH DD +ET + Sbjct: 59 VTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 118 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R+DI +L + D +N D Sbjct: 119 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 171 Query: 198 RFERVRVR 205 + R ++R Sbjct: 172 EYMRNKIR 179 >gi|15606915|ref|NP_214296.1| cell cycle protein MesJ [Aquifex aeolicus VF5] gi|6016543|sp|O67728|TILS_AQUAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|66360363|pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase gi|66360364|pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase gi|160285466|pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285467|pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285468|pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285469|pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285496|pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|160285498|pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|160285499|pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|2984151|gb|AAC07685.1| cell cycle protein MesJ [Aquifex aeolicus VF5] Length = 317 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYVSDVCS-- 78 +L+A SGG DS+ L L L +++ +K A++ +H LRE+A+ + + + Sbjct: 27 VLIAFSGGVDSVVLTDVL---LKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83 Query: 79 --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + V + + L A R RY + E ++ I TAH +D LET Sbjct: 84 NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + +G GL G+ + + I RP +R +I + + + W ED +N + Sbjct: 144 L-----FFTRGTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196 Query: 197 DRFERVRVR 205 R R+R Sbjct: 197 VSIPRNRIR 205 >gi|62185135|ref|YP_219920.1| hypothetical protein CAB507 [Chlamydophila abortus S26/3] gi|62148202|emb|CAH63959.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 254 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDVCS 78 I+VA+SGG DS+ LL+ L ++ S R F K+ A+++ C E +K +Y++++C Sbjct: 37 IVVALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYSCGSEVSK---QYLANICD 92 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + +S V+ P+ + + R L+ + AK + AT + H DD ++T M Sbjct: 93 KIHVPYSSVT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVAFGHHRDDVVQTALMN 151 Query: 139 --SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + D + + + I RP + IR F Sbjct: 152 LLHKAEFA----GMLPVLDMVHFGIT--ILRPLIFTPESYIRKF 189 >gi|327401180|ref|YP_004342019.1| hypothetical protein Arcve_1298 [Archaeoglobus veneficus SNP6] gi|327316688|gb|AEA47304.1| protein of unknown function UPF0021 [Archaeoglobus veneficus SNP6] Length = 307 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 24/132 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS+ L AL + +R ++F AI++D ++ V ++ S+L Sbjct: 50 IAIALSGGKDSVALTFALDRLYGERK--DVEFVAITIDEGIKGYRPPTVEIAREITSQLG 107 Query: 82 IAHSVVSWK--------------NSKPQT--GLMAAAREARYALISEHAKTINATLIMTA 125 I H +VS+K + KP T G+ R L++ A+ + AT + TA Sbjct: 108 IEHHIVSFKENFGMALDEMVKLGDKKPCTYCGVF------RKYLLNRTARELGATKLATA 161 Query: 126 HTFDDQLETVYM 137 H DD+ +T+ + Sbjct: 162 HNLDDETQTILL 173 >gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E] Length = 451 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%) Query: 15 SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69 L PAH + +A SGG DS+ L A L R I+ I H + A D Sbjct: 15 ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72 Query: 70 ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122 + + D C LRI + KNS+ AR+ARY +N ++ Sbjct: 73 LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172 M AH +DQ ETV MR + G+ GLSGM D + LW RP+L+ Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 R+ I F + + +D +NTD + R R+R +DI H L L K +++ Sbjct: 174 LRDKISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAVENI 224 >gi|162146631|ref|YP_001601090.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl 5] gi|161785206|emb|CAP54752.1| putative tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl 5] Length = 430 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 28/370 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG+DS+ L + A+ VDH LR A E L Sbjct: 40 VGVAVSGGADSLCLAYLAARW-------RRAVRALIVDHGLRPAAAAEAALTRRRLHALG 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ +P GL AR ARYA ++ + ++ H DQ ET+ +R R Sbjct: 93 IPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR--R 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 A GL+GM ++ + +L + RP L R+ +R+ L + ++W EDPSN D R ER Sbjct: 151 RAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAER 209 Query: 202 VRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 RVR + D D A L + R+ + A L+ + +T+ +A++ D Sbjct: 210 ARVRAALDD-DPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDP-T 267 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN-F 315 L F + VS G LP R++ + + G C+ + R + + Sbjct: 268 CPRALAFLMRAVS-----GSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 322 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---LIQIGPQSYRKADVPSGIPPII 372 L + P ++ P+ VWDGR+ + + + +G A P G Sbjct: 323 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 380 Query: 373 AQRALSSMPS 382 RAL ++P+ Sbjct: 381 PARALRTLPA 390 >gi|269115197|ref|YP_003302960.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis] gi|268322822|emb|CAX37557.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis ATCC 23114] Length = 311 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 22/196 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+ VSGG DSM LL L S + V++ R + + VS C+ Sbjct: 28 FLIGVSGGPDSMWLLNLLKS---------LNIVVAHVNYNKRYDSNYDESLVSRFCADNN 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++S N A AR+ RY E +K I+ AH DD LE+ M+ Sbjct: 79 IPLEILSLHNKYSSGNFQAIARKERYDFYFEISKKYQCDYILLAHQKDDFLESSIMQENS 138 Query: 142 DYAEKGMG---LSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + G LS + + +++ LNLW +++I F + +I + D +N + Sbjct: 139 NRKPLFWGIKQLSILNNNVIFRPMLNLWT--------KQEIIDFCNEYSILFATDYTNAE 190 Query: 197 DRFERVRVRRFVRDID 212 + R ++R ++ +D Sbjct: 191 THYTRNKIRSNLKKLD 206 >gi|209543377|ref|YP_002275606.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209531054|gb|ACI50991.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 28/370 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG+DS+ L + A+ VDH LR A E L Sbjct: 48 VGVAVSGGADSLCLAYLAARW-------RRAVRALIVDHGLRPAAAAEAALTRRRLHALG 100 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ +P GL AR ARYA ++ + ++ H DQ ET+ +R R Sbjct: 101 IPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR--R 158 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 A GL+GM ++ + +L + RP L R+ +R+ L + ++W EDPSN D R ER Sbjct: 159 RAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAER 217 Query: 202 VRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 RVR + D D A L + R+ + A L+ + +T+ +A++ D Sbjct: 218 ARVRAALDD-DPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDP-T 275 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN-F 315 L F + VS G LP R++ + + G C+ + R + + Sbjct: 276 CPRALAFLMRAVS-----GSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 330 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---LIQIGPQSYRKADVPSGIPPII 372 L + P ++ P+ VWDGR+ + + + +G A P G Sbjct: 331 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 388 Query: 373 AQRALSSMPS 382 RAL ++P+ Sbjct: 389 PARALRTLPA 398 >gi|297181792|gb|ADI17972.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Chloroflexi bacterium HF0200_09I09] Length = 351 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 11/133 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79 ++VA SGG DS LIA+ V G++ A + DH LR +++ + +V + + Sbjct: 30 LIVACSGGPDSSAALIAVVRVRERAGGGEV--VAATFDHGLRPQVENDADIEFVQTLAGK 87 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + SVV K ++ AAAR+ARY + A ++A ++ HT +DQ ETV +R Sbjct: 88 MGV-RSVVG-KATEGFGTSEAAARKARYIWLGRVALEMSARACVSGHTLNDQAETVLLRL 145 Query: 140 QRDYAEKGMGLSG 152 R G GL+G Sbjct: 146 AR-----GTGLTG 153 >gi|319901663|ref|YP_004161391.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108] gi|319416694|gb|ADV43805.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108] Length = 423 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 25/192 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 ILVA+SGG+DS+ LL L ++ HC LR T D + +V ++C Sbjct: 22 ILVALSGGADSVALLRLLLAL----------GYTCEAAHCNFHLRGTESDRDETFVRNLC 71 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L+I ++ + K + AAR RY + K +A +I AH DD +E Sbjct: 72 KTLQIPLYIIHFSTEKEAKKRHVSIEMAARTLRYEWFEKMRKECDAGVIAIAHHQDDSVE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G G++G+ + +N I RP L R++I +L + D + Sbjct: 132 TLLLNLIR-----GTGINGL--QGIRPINGKIVRPLLCLGRKEIIEYLESIGQEYVTDST 184 Query: 194 NTDDRFERVRVR 205 N D + R ++R Sbjct: 185 NFQDEYTRNKIR 196 >gi|160892003|ref|ZP_02073006.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492] gi|156858481|gb|EDO51912.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492] Length = 422 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 ILVA+SGG+DS +AL +L + HC LR E+ +DE +V + Sbjct: 20 ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 68 Query: 77 CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C R+ V + + + AARE RYA + + +A +I AH DD + Sbjct: 69 CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + R G G++G+ + N I RP L R++I +L ++ D Sbjct: 129 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 181 Query: 193 SNTDDRFERVRVR 205 +N D + R ++R Sbjct: 182 TNLQDEYTRNKIR 194 >gi|254884290|ref|ZP_05257000.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA] gi|319640622|ref|ZP_07995340.1| cell-cycle protein [Bacteroides sp. 3_1_40A] gi|254837083|gb|EET17392.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA] gi|317387756|gb|EFV68617.1| cell-cycle protein [Bacteroides sp. 3_1_40A] Length = 434 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL L + F H E + + R+V+++C L Sbjct: 22 VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + S+ + AARE RY + K +I AH DD +ET + Sbjct: 76 VTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R+DI +L + D +N D Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188 Query: 198 RFERVRVR 205 + R ++R Sbjct: 189 EYMRNKIR 196 >gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147] Length = 491 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 47/312 (15%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + +L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAIGVALSALPDDARIALAYSGGLDSTVLLHA-----AARIAGAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 A + + ++ L + AH V + + G+ A+AR+ARY + A Sbjct: 69 ADAWLAHCAETADALGVRFDAAHVDVPRASGQ---GVEASARDARYRALETMCARHGARA 125 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDI 177 + A DDQ ETV ++ R G G++G+ ++ RP L R + Sbjct: 126 LWLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPQYRPASTDVVRMRPLLHLLRAQL 180 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVA 235 + Q + W +D SN + R+ R +R V L AL F+D R + A A Sbjct: 181 ERYAQQHALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAA 236 Query: 236 M-LIPKYLTVHMRSII-----AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGY 284 L+ + +R++ A+S+D L + LL Y +R + LPG Sbjct: 237 QRLLDDLAAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMR--------SLGLPGA 288 Query: 285 RSMERVMLFLKS 296 S R+ +K Sbjct: 289 -SAARLAEMMKQ 299 >gi|126728389|ref|ZP_01744205.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata E-37] gi|126711354|gb|EBA10404.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata E-37] Length = 475 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 50/223 (22%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I +AVSGG DSM +L H R FG ++ ++V+H RE A E V+ C Sbjct: 24 FPSEIGLAVSGGGDSMAMLALAHGWA--RVFG-VRLWVVTVNHGFREEAAAEAEMVAAEC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W M AAREAR LI+ + L+ AHT DD ET M Sbjct: 81 AVLGWPHASLHWSWDG-HGNAMEAAREARVRLIAGWRGRLRHVLM--AHTQDDVAETFLM 137 Query: 138 RSQRDYAEKG-----------------------MGLSGMCDTILY--------------D 160 R R G +G + + Y Sbjct: 138 RLARGSGVDGLSKMQARRVVDQPRLGVGALAPMLGEAPAAEGCRYPVIVTADGTAGRDAG 197 Query: 161 LNLWIS-------RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ W+ RP L RR D+R ++ + + +DPSN + Sbjct: 198 VDWWVEGETFEILRPCLAMRRADLRHYVRVLQVPFVDDPSNEN 240 >gi|118475434|ref|YP_892513.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. fetus 82-40] gi|118414660|gb|ABK83080.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. fetus 82-40] Length = 336 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 23/200 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 ++ L+A S G+DS AL +L++++ I+F +++ R + +E ++ Sbjct: 9 LHHKKCLLAFSYGTDST----ALFHILNEKN---IEFDCAFINYKTRVQSDEEEVSAKEL 61 Query: 77 CSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + + + ++ N + + AR+ R+ E N ++ AH +D LE + Sbjct: 62 CLKFNKNIYIKIAPLNLENGSNFEKKARDIRHKFFDEICIKFNYDTLILAHQLNDCLEWL 121 Query: 136 YMRSQRDYAEKGMGLSGMC-----DTILYDL-----NLWISRPFLRCRREDIRSFLLQRN 185 +M+ KG G +C +T + + + + RP + R +I S+L Q+N Sbjct: 122 FMQ-----LSKGSGTVQLCGLEPTNTKIAEFENIKKQISVIRPLINVSRNEIISYLKQKN 176 Query: 186 ISWCEDPSNTDDRFERVRVR 205 I++ D SN D +F+R +R Sbjct: 177 INYFTDISNFDFKFKRNFIR 196 >gi|294777183|ref|ZP_06742640.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510] gi|294449052|gb|EFG17595.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510] Length = 442 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG+DS+ LL L + F H E + + R+V+++C L Sbjct: 30 VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 83 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + S+ + AARE RY + K +I AH DD +ET + Sbjct: 84 VTLHVTHFDTVTYASRHHVSVEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 143 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ + N I RP L R+DI +L + D +N D Sbjct: 144 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 196 Query: 198 RFERVRVR 205 + R ++R Sbjct: 197 EYMRNKIR 204 >gi|194289326|ref|YP_002005233.1| tRNA(ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424] gi|193223161|emb|CAQ69166.1| tRNA(Ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424] Length = 468 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS+ LL A + ++ G + A+ V H L+ A + R+ + +C++ ++ + Sbjct: 32 LSGGRDSVALLHAARAAVAQAGDGA-RVVALHVHHGLQAEADEWDRFCAALCAQWQVGYF 90 Query: 86 V--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V VS + + + AA R AL + A + A L++ AH DDQ+ETV +R R Sbjct: 91 VRRVSVRPAAGEGVEAAARRARYAALAAMCADS-GARLLLFAHHQDDQVETVLLRLFRGA 149 Query: 144 AEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GM +GM D + + RP+L R I + + W +DPSN D R+ R Sbjct: 150 GVAGM--AGMPAMRPLDPRSGVMLLRPWLDEPRAGIEDYCAANALRWVDDPSNADGRYAR 207 Query: 202 VRVRR 206 +R+ Sbjct: 208 NALRQ 212 >gi|291536194|emb|CBL09306.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Roseburia intestinalis M50/1] Length = 244 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 30/220 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ LL AL + R F KF ++V L D + VS +C L Sbjct: 26 IAIGISGGKDSLTLLYALSGL---RRFYPQKFDLVAVTVDLGYENFD-LTAVSKLCHDLD 81 Query: 82 IAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + +V+ +N KP L A R+ +++ K + + AH DD + Sbjct: 82 VPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGA---LNQAIKELGCNKVAYAHHMDDVI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 ET ++ M G T + D +L I RP + +++ F + + Sbjct: 139 ETAFL---------SMIFEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYQLP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++P D +R V++ ++ +++ +K K F ++ Sbjct: 190 VVKNPCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229 >gi|167627656|ref|YP_001678156.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189035967|sp|B0TYH9|TILS_FRAP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|167597657|gb|ABZ87655.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 400 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+HI++ SGG DS LL + D I AI ++H + A + +C+ Sbjct: 17 PSHIIIGYSGGVDSSVLL----DITKDLDIPTI---AIYINHNIHPDALKWQLHCQTICN 69 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I S + A A + R E ++ +++ H DDQ ET ++ Sbjct: 70 NANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSPILLLGHHLDDQAETFLIQ 129 Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL+G+ Y LN + RP L ++DI+ + Q I+ D SN + Sbjct: 130 AIR-----GSGLAGLASMPYYKQLNHGAVLRPLLDYTKKDIQDYASQNKINHIYDDSNEN 184 Query: 197 DRFERVRVRRFV 208 ++ R +R + Sbjct: 185 IKYRRNLIRNQI 196 >gi|317480455|ref|ZP_07939551.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36] gi|316903402|gb|EFV25260.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36] Length = 422 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 ILVA+SGG+DS +AL +L + HC LR E+ +DE +V + Sbjct: 20 ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 68 Query: 77 CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C R+ V + + + AARE RYA + + +A +I AH DD + Sbjct: 69 CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + R G G++G+ + N I RP L R++I +L ++ D Sbjct: 129 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 181 Query: 193 SNTDDRFERVRVR 205 +N D + R ++R Sbjct: 182 TNLQDEYTRNKIR 194 >gi|78048470|ref|YP_364645.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036900|emb|CAJ24593.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 450 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 9/207 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P+ + + P +L+ SGG DS + LH + + + A+ V H L Sbjct: 14 IAPVLTGTPLLLPATPPGPVLLTYSGGMDSS---VLLHLLAATPRYRHAGLRALHVHHGL 70 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A + C L++ +V + ++ +GL A + + Sbjct: 71 HADADAWAAHCQRTCDTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWL 129 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFL 181 AH DDQ ET +R+ R A GL+ M LW RP L R D+ ++ Sbjct: 130 ALAHHRDDQAETFLLRALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLHAYA 185 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + W EDPSN D R +R +R V Sbjct: 186 HAQGVRWIEDPSNADPRHDRNFLRSQV 212 >gi|160285497|pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine Length = 315 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYVSDVCS-- 78 +L+A SGG DS+ L L L +++ +K A++ +H LRE+A+ + + + Sbjct: 27 VLIAFSGGVDSVVLTDVL---LKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83 Query: 79 --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + V + + L A R RY + E ++ I TAH +D LET Sbjct: 84 NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + +G GL G+ + + I RP +R +I + + + W ED +N + Sbjct: 144 L-----FFTRGTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196 Query: 197 DRFERVRVR 205 R R+R Sbjct: 197 VSIPRNRIR 205 >gi|270296347|ref|ZP_06202547.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273751|gb|EFA19613.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 424 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 ILVA+SGG+DS +AL +L + HC LR E+ +DE +V + Sbjct: 22 ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 70 Query: 77 CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C R+ V + + + AARE RYA + + +A +I AH DD + Sbjct: 71 CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + R G G++G+ + N I RP L R++I +L ++ D Sbjct: 131 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 183 Query: 193 SNTDDRFERVRVR 205 +N D + R ++R Sbjct: 184 TNLQDEYTRNKIR 196 >gi|307711226|ref|ZP_07647648.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321] gi|307617188|gb|EFN96366.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321] Length = 425 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A+SGG DSM L L + + +I+ V+H R + E + + + + Sbjct: 20 AKVVLALSGGLDSMFLFKVLSTYKKEL---EIELILAHVNHKQRVESDWEEQELRKLAAE 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ + A AR RY E K AT ++TAH DDQ+ET+ MR Sbjct: 77 AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + LSG+ + + + I RPFL +++D I ED SN ++ + Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPP------IFHFEDISNQENHY 183 Query: 200 ERVRVR 205 R R+R Sbjct: 184 FRNRIR 189 >gi|282164695|ref|YP_003357080.1| hypothetical protein MCP_2025 [Methanocella paludicola SANAE] gi|282157009|dbj|BAI62097.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 310 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +V H+ VA+SGG DS L L S R IKF+AI++D + + V Sbjct: 42 RMVVPGDHVAVAMSGGKDSAVTLSILFETFSMRP--DIKFTAITIDEGIDGYRNFSIPRV 99 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREA--------RYALISEHAKTINATLI 122 ++C +L + H VVS++ T L +EA R L++ A+ I A + Sbjct: 100 KELCDKLGVPHIVVSFQEEVGCTLDEMLTHERKEASCTYCGVFRRTLLNTTARNIGANKL 159 Query: 123 MTAHTFDDQLETVYM 137 T H DD +TV + Sbjct: 160 ATGHNLDDDAQTVLL 174 >gi|241888931|ref|ZP_04776235.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC 10379] gi|241864180|gb|EER68558.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC 10379] Length = 438 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 18/195 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ L H ++++ + A ++H LRE + +E +V + Sbjct: 13 IALGLSGGVDSIALF---HLLVTEYKESYKELVAFHINHGLREQSYEEAEFVENFVKN-- 67 Query: 82 IAHSVVSWK---NSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++V +K N K Q T AR+ RY E + ++TAH +DQ+E Sbjct: 68 --YNVKFYKKELNMKDQIRDSHTSEEMLARKLRYGAFEEMSSLEGGVKLITAHHKNDQVE 125 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + MR + + M + M + L + RP L + D+ + + ++ + D + Sbjct: 126 NILMRL---LSGRSMDYNLMIEEKTTIGKLAVYRPLLNVLKADLEQYADKNDLKYYVDST 182 Query: 194 NTDDRFERVRVRRFV 208 N D + R +R + Sbjct: 183 NFDTDYTRNNIRHNI 197 >gi|108796880|ref|YP_636178.1| hypothetical protein RF62 [Pseudendoclonium akinetum] gi|122217891|sp|Q3ZJ89|TILS_PSEAK RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56159578|gb|AAV80602.1| hypothetical protein RF62 [Pseudendoclonium akinetum] Length = 600 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 10/149 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE F + + +L+A SGG DS LL + +LS + +G K A+ +HC ++ Sbjct: 14 IEKSNLFTTNKIRDKKLLIAFSGGQDSSCLLTIFY-ILS-KKWG-FKLGAVYCNHCWTDS 70 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + D I V NS+P AR+ RY+ +K + ++T Sbjct: 71 PQSSLS-AFDTLQMFDIPFYFVESPNSEPMKP-EQKARDWRYSSFYTISKWEDYDFVLTG 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 H+ D +ETV R G GL G+C Sbjct: 129 HSLSDCVETVLFNLFR-----GSGLKGIC 152 >gi|119356415|ref|YP_911059.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266] gi|119353764|gb|ABL64635.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266] Length = 325 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 28/200 (14%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E +R +R LV H+L+AVSGGSDSM L LH + R + SA+ + LR Sbjct: 9 LEQIR--IRQLVSKEDHVLLAVSGGSDSMAL---LHLFCAIRRAVPCRISAVHCNFRLRA 63 Query: 65 TAKDE-VRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARY----ALISEHAK 115 DE R+V + C L + V + K +T + AR RY L+SEH Sbjct: 64 EESDEDERFVQEACLALGVTCYTVGFDTLKMAGEWKTSIEETARILRYRYFDTLLSEHGM 123 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRR 174 + + T H +D ET+ R + G+ G+ I+ RP L + Sbjct: 124 KV----VATGHHVNDNAETMLFNLFRGTSLLGLRGIRAKRGKII--------RPLLLVHK 171 Query: 175 EDIRSFLLQRNISWCEDPSN 194 +I ++ +++I++ D +N Sbjct: 172 VEILGYIDEKHIAFRIDATN 191 >gi|315655902|ref|ZP_07908800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii ATCC 51333] gi|315489966|gb|EFU79593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii ATCC 51333] Length = 415 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 33/217 (15%) Query: 8 SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P L+ A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPL-PWDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISE----HAKTINAT 120 + E + L A +V+ + G AR R+ L+++ HAKT Sbjct: 91 SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------CDTIL------------- 158 +I+T HT DDQ ETV +R R + + +S M C T L Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLR--SISAMREFESLDCQTGLPLRFAWGEEDSGA 208 Query: 159 -YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++L ++RP L RR + Q + DPSN Sbjct: 209 DAVVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSN 245 >gi|306826197|ref|ZP_07459532.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431673|gb|EFM34654.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 425 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F++ + H +++A+SGG DSM L L + + +I+ V+H R + Sbjct: 10 FLQKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQKEL---EIELILAHVNHKQRSESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ A ARE RY + K AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEAGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D + I RP ++D L Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-GIEIIRPLFHFHKKDFPPIL----- 171 Query: 187 SWCEDPSNTDDRFERVRVR 205 ED +N ++ + R R+R Sbjct: 172 -HFEDQTNQENTYFRNRIR 189 >gi|13507961|ref|NP_109910.1| PP-loop superfamily protein ATPase [Mycoplasma pneumoniae M129] gi|2496288|sp|P75549|TILS_MYCPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1674311|gb|AAB96257.1| PP-loop superfamily ATPase/cell cycle protein MESJ-like protein [Mycoplasma pneumoniae M129] gi|301633532|gb|ADK87086.1| tRNA(Ile)-lysidine synthetase [Mycoplasma pneumoniae FH] Length = 289 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 24/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81 + VSGG DSM LL H ++ + V++ R TA + + V + C +L+ Sbjct: 7 IAGVSGGPDSMLLLKLYHKKIA---------CVVHVNYNKRTTALRDQKMVEEYCKQLKV 57 Query: 82 --IAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I H+V WK + A AR+ R+ + A ++ AH DD +E Sbjct: 58 PLIVHTVPEDTVWKKN-----FQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAK 112 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M Q D ++ M LY + ++ RPF++ + +I + + + + D +N Sbjct: 113 M--QLDARKRAMYYGIKTRGELYGMKVY--RPFIKYWKNEILALCEEHKVPYGIDETNAQ 168 Query: 197 DRFERVRVRR 206 ++R +VR+ Sbjct: 169 PIYKRNQVRQ 178 >gi|238927155|ref|ZP_04658915.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531] gi|238884937|gb|EEQ48575.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531] Length = 463 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 25/210 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 +L A SGG+DS+ LL L + R+ G +H +R +++ + V+ C+ Sbjct: 21 VLCACSGGTDSLALLDVLMRL---RAEGGPHVMCAHYEHGIRGGSSRADADAVAAYCAEH 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V + + + AAR RY + I AH DD ETV Sbjct: 78 HIPCVIEAGDVPYYARAHKCSIETAARVCRYDFLHRVHIREQCDGIALAHHADDLAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G G +G+ ++D ++L RPFL R +I ++ + N+ C D +N Sbjct: 138 MRILR-----GTGPAGLAAMRVWDGVHL---RPFLFTARAEIEVYIREHNLRPCHDVTND 189 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +R R+R HAL +++ + + Sbjct: 190 QQDIQRNRIR--------HALLPELRTYGN 211 >gi|313673407|ref|YP_004051518.1| tRNA(ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312940163|gb|ADR19355.1| tRNA(Ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 420 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 20/195 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 + ++VA SGG DS+ LL L+ + + + I A V+H +R E + + + C Sbjct: 26 SKVVVAFSGGRDSVALLHYLYLISKNYN---IDLFACHVNHGIRGEMGERDENFCKSFCG 82 Query: 79 RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + V + + AAR+ RY + E + ++A I TAH FDD +ET Sbjct: 83 KFDIPLFIKKIDVPSYVRRFNLSVEDAARKLRYQALFEVLQKLDADYIATAHHFDDIVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ K S + + +D + + RPF R I ++ + + +D +N Sbjct: 143 FFV--------KVFTGSAIYNLKGFDRSDRVLRPFANVERIQIEKYIKHNKLEYVDDETN 194 Query: 195 TDDRFERVRVRRFVR 209 F VR +VR Sbjct: 195 ----FSSDYVRNWVR 205 >gi|89092105|ref|ZP_01165060.1| mesJ protein [Oceanospirillum sp. MED92] gi|89083840|gb|EAR63057.1| mesJ protein [Oceanospirillum sp. MED92] Length = 442 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++A SGG DS LL L+DR + + V+H L + + RL + Sbjct: 35 VIAHSGGLDSQLLLHLAAKHLADR-----ELLVVHVNHQLHPKSGAWAEFSQREAERLGL 89 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +H V P++ A AR+ARYA + + N L+M H DDQ ET+ R R Sbjct: 90 SHKVSC---VVPESSSEAHARDARYAAFTSLLRE-NDCLLMGHHA-DDQAETILFRMIRG 144 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G L GM + + + RP L R ++ + +++ +DPSN+ D ++R Sbjct: 145 SGIRG--LQGMPFSRQFAQGQLL-RPLLNLERSELEGAVQNLGLAYIDDPSNSLDHYDRN 201 Query: 203 RVRRFV 208 +R V Sbjct: 202 YLRHHV 207 >gi|154149315|ref|YP_001406091.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381] gi|153805324|gb|ABS52331.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381] Length = 331 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++A S GSDS L H++L +KF V++ RE + E+ ++C + + Sbjct: 22 ILAFSHGSDSTALF---HTLLD----LNLKFDVAFVNYKTRENSDLEMVCARELCEKNNL 74 Query: 83 A-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H ++S AR+ R++ + +++TAH +D+ E M+ Sbjct: 75 KFHCLISPLKFNLNGNFENEARKIRWSFFEKLCVQNGYNVVITAHQLNDKFEWFLMQ--- 131 Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG GL + + + N + RP L +++I +FL N+ + D SN + +F Sbjct: 132 --LSKGSGLVNLLSPEMVEKRENFTVLRPLLNTGKDEILNFLRINNLKFFNDISNQNLKF 189 Query: 200 ERVRVR 205 +R +R Sbjct: 190 KRNFIR 195 >gi|307705917|ref|ZP_07642755.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597] gi|307620578|gb|EFN99676.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597] Length = 425 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F++ + H +++A+SGG DSM L L + + +I+ V+H R + E Sbjct: 10 FLKKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + + + + A AR RY E K AT ++TAH D Sbjct: 67 EKELRKLAAEAELPIYISDFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ET+ MR R + LSG+ + + + + I RPFL +++D I Sbjct: 123 DQVETILMRLIR--GTRLRYLSGIKEKQVVGV-IEIIRPFLHFQKKDFPP------IFHF 173 Query: 190 EDPSNTDDRFERVRVR 205 ED SN + + R R+R Sbjct: 174 EDTSNKKNHYFRNRIR 189 >gi|319779353|ref|YP_004130266.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9] gi|317109377|gb|ADU92123.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9] Length = 366 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DS +++A+ S +G I+ I V H L A + V+ R Sbjct: 53 IGIAFSGGKDS--VVLAIQSKYIATRYG-IEVHLIHVHHGLYAEADEWVQRNLKFAERFG 109 Query: 82 -IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + H + + G+ AAAR+ARY I++ K + + T H DDQ ET+ +R Sbjct: 110 FLIHILYVNVPTDTNKGVEAAARQARYKAITDKCKELGIGHVFTGHHIDDQSETILIRLL 169 Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNT 195 R G G+ G+ + +Y + RP+L +I + +I +DPSN Sbjct: 170 R-----GTGILGIKGIPPKSEIYGIKF--HRPWLNSTPTYNILELIGHESI---KDPSNF 219 Query: 196 DDRFERVRVRR 206 D ++ R VR Sbjct: 220 DSKYARGAVRN 230 >gi|327490349|gb|EGF22136.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1058] Length = 425 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGDFSEN----AARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DQ ETV+MR R + LSGM + I RP L + D Sbjct: 115 LVTAHHAADQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDFPY-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 I ED SN + + R R+R Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIR 189 >gi|29840280|ref|NP_829386.1| hypothetical protein CCA00521 [Chlamydophila caviae GPIC] gi|29834628|gb|AAP05264.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 247 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ A+ +Y++++C +++ Sbjct: 37 IVVALSGGKDSLSLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGAEVSQQYLANICDKIQ 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--S 139 + + ++ P+ + + R L+ + AK + AT + H DD ++T M Sbjct: 96 VPFTSIA-SPYDPEVPECYSCSQVRRRLLFQAAKELGATAVAFGHHRDDVVQTALMNLLH 154 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + D + +D+ I RP + IR F Sbjct: 155 KAEFA----GMLPVLDMVHFDIT--ILRPLILTPESWIRKF 189 >gi|315656172|ref|ZP_07909063.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493174|gb|EFU82774.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 415 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 33/217 (15%) Query: 8 SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P L+ A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPL-PWDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISE----HAKTINAT 120 + E + L A +V+ + G AR R+ L+++ HAKT Sbjct: 91 SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------CDTIL------------- 158 +I+T HT DDQ ETV +R R + + +S M C T L Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLR--SISAMREFESLDCQTGLPLRFAWGEEDSGA 208 Query: 159 -YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++L ++RP L RR + Q + DPSN Sbjct: 209 DAVVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSN 245 >gi|269966268|ref|ZP_06180357.1| cell cycle protein MesJ [Vibrio alginolyticus 40B] gi|269829183|gb|EEZ83428.1| cell cycle protein MesJ [Vibrio alginolyticus 40B] Length = 436 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 AREARY ++++ + +++T DDQ+ET + +R KG LS M +++ + Sbjct: 100 AREARYQALTKYIQ--EGDILLTGQHADDQIETFLLALKRGSGPKG--LSSMAESMPFSC 155 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + RP L +R+ I + + W ED SN D R++R +R V Sbjct: 156 GSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRYDRNFLRHCV 201 >gi|257058096|ref|YP_003135984.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802] gi|256588262|gb|ACU99148.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802] Length = 326 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79 IL+A+SGG DS+ L L + S + I++ HC + DE +V + Sbjct: 25 ILIAISGGQDSVCLGKLLLDLQSKWGW------KIAIGHCDHRWSYDEGIADHVEKLAQN 78 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + N K AAAR+ RY + E A+ + T ++T HT D+ ET+ Sbjct: 79 WGIPFYLKVANNLKETE---AAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAETLLYNL 135 Query: 140 QRDYAEKGMGLSGMCD-TILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G G G+ T +L N+ + RP L R + +F Q ++ ED +N + Sbjct: 136 IR-----GAGTDGLSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLPIWEDAANEN 190 Query: 197 DRFERVRVRR 206 ++ R R+R+ Sbjct: 191 LKYSRNRIRQ 200 >gi|307710369|ref|ZP_07646810.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564] gi|307618961|gb|EFN98096.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564] Length = 425 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F+R + H +++A+SGG DSM L L + + +I+ V+H R + E Sbjct: 10 FLRKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + V ++ + A AR RY E K AT ++TAH D Sbjct: 67 EKELRKLAAEAGLPIYVSNFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ET+ MR R + +SG+ + + + I RPFL ++D I Sbjct: 123 DQVETILMRLIR--GTRLRYISGIKEKQVVG-EIEIIRPFLHFHKKDFPP------IFHF 173 Query: 190 EDPSNTDDRFERVRVR 205 ED SN ++ + R R+R Sbjct: 174 EDTSNKENYYFRNRIR 189 >gi|240146321|ref|ZP_04744922.1| PP-loop family protein [Roseburia intestinalis L1-82] gi|257201562|gb|EEU99846.1| PP-loop family protein [Roseburia intestinalis L1-82] Length = 244 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 30/220 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ LL AL + R F KF ++V L D + VS +C L Sbjct: 26 IAIGISGGKDSLTLLYALSGL---RRFYPQKFDLVAVTVDLGYENFD-LTAVSKLCHDLD 81 Query: 82 IAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + +V+ +N KP L A R+ +++ K + + AH DD + Sbjct: 82 VPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGA---LNQAIKELGCNKVAYAHHMDDVI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 ET ++ M G T + D +L I RP + +++ F + + Sbjct: 139 ETAFL---------SMIFEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYPLP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++P D +R V++ ++ +++ +K K F ++ Sbjct: 190 VVKNPCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229 >gi|241668228|ref|ZP_04755806.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876763|ref|ZP_05249473.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842784|gb|EET21198.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 400 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+HI++ SGG DS LL + D I AI ++H + A + +C+ Sbjct: 17 PSHIIIGYSGGVDSSVLL----DITKDLDIPTI---AIYINHNIHPDALKWQLHCQTICN 69 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I S + A A + R E ++ ++ H DDQ ET ++ Sbjct: 70 NANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSPTLLLGHHLDDQAETFLIQ 129 Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GL+G+ Y LN + RP L ++DI+++ Q I+ D SN + Sbjct: 130 AIR-----GSGLAGLASMPYYKQLNHGAVLRPLLDYTKKDIQNYASQNKINHIYDDSNEN 184 Query: 197 DRFERVRVRRFV 208 ++ R +R + Sbjct: 185 IKYRRNLIRNQI 196 >gi|296271399|ref|YP_003654031.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833] gi|296094186|gb|ADG90138.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833] Length = 325 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 18/205 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L + +L A SGG+DS+ L A + R ++ ++VDH L+E + Sbjct: 13 AVRLSLAGLRPGSLVLAACSGGADSL-ALAAALGFCAPRL--GLRAGLLTVDHGLQEGSD 69 Query: 68 DEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 R V+ + L + +VV + P+ A YA +S A+ + A ++ Sbjct: 70 QRAREVAALAPELGLEPAEVLTVVVGRAGGPEAAARDAR----YAALSAAARRLGAVAVL 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ETV +R R + L+GM ++ RPFL R R Sbjct: 126 LGHTRDDQAETVLLRLARGSGSR--SLAGMA-----PVSGIYRRPFLGLSRARTREACAA 178 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 + EDP N+D + RVRVR+ V Sbjct: 179 LGLRPWEDPHNSDPAYARVRVRKRV 203 >gi|225420299|ref|ZP_03762602.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme DSM 15981] gi|225041116|gb|EEG51362.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme DSM 15981] Length = 499 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 51/242 (21%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL IE L ++ AVSGG+DS+ LL L + + I+ A+ V H Sbjct: 8 FLETIEQYHM----LRQGGRVVAAVSGGADSVCLLALLCGLRGELG---IQVRAVHVHHG 60 Query: 62 LR-ETAKDEVRYVSDVCS---------RLRIAHSVVSWKNSKPQTGLM---------AAA 102 LR + A + +V +C R+ + + K S+ + G + A A Sbjct: 61 LRGDEADRDAEFVRQLCEGFKVPFALRRVDVREFARAKKLSEEEAGRLLRYRVFEECAGA 120 Query: 103 RE----ARYA----LISEHAKTINATL----------IMTAHTFDDQLETVYMRSQRDYA 144 E A +A + E A NA L + AH DDQ ET+ R Sbjct: 121 WERGAWAEWADEGTIGPEGAGGGNAWLKADRAADGVRVAVAHHGDDQAETILHNLCRGSG 180 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 KG+G GM + I RP + R++I +L +S+C+D +N D + R R+ Sbjct: 181 LKGLG--GM-----RPVRGRIIRPLIAVSRKEILEWLAANGLSFCQDSTNDTDHYTRNRI 233 Query: 205 RR 206 RR Sbjct: 234 RR 235 >gi|320010033|gb|ADW04883.1| tRNA(Ile)-lysidine synthetase [Streptomyces flavogriseus ATCC 33331] Length = 357 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L+ + V + +R Sbjct: 58 VLVACSGGADSMALASAL--AFESRKL-PVRAGGITVDHNLQPGSGLRAGEVVARLAEMR 114 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A +V ++ P+ A A A H A ++ HT DDQ ETV + Sbjct: 115 LDPVEAVAVRVGRDGGPEAAARDARYAALDAAAERH----GAFAVLLGHTRDDQAETVLL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM RPFL+ R+ R L ++I +DP N D Sbjct: 171 GLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHNIDP 226 Query: 198 RFERVRVR 205 + R R+R Sbjct: 227 AYTRSRLR 234 >gi|325695771|gb|EGD37670.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150] Length = 425 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 16/184 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM LL L + S + I+ + V+H R + E + + + +L Sbjct: 22 VLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHKQRPESDQEEKALVKIAEQLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S+ S + AR+ RY + + + T ++TAH DDQ ETV+MR R Sbjct: 79 VKIFTSSFSGSFSEN----VARQFRYDFFGKVMQEGHYTALVTAHHADDQAETVFMRLLR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + I RP L + D +I ED SN + + R Sbjct: 135 --GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF------PDIDHFEDSSNFQNDYLR 185 Query: 202 VRVR 205 R+R Sbjct: 186 NRIR 189 >gi|31544871|ref|NP_853449.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)] gi|61216586|sp|Q7NAI9|TILS_MYCGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|31541717|gb|AAP57017.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)] gi|284930947|gb|ADC30886.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(high)] Length = 287 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 14/184 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ VSGG DS+ LL DR +IK A +++ R TA + VSD C + +I Sbjct: 10 LIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALRDQLIVSDYCLKNKI 60 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S S + AR+ RY + AH DD LET M+ + Sbjct: 61 PLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIMQYDK 120 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + G+ Y +L I RP L +++I S+L Q I + D SN ++R Sbjct: 121 N---QELLFYGLHQESSYQ-SLKIFRPLLNLWKDEILSYLEQDKIVYGVDESNFLSTYQR 176 Query: 202 VRVR 205 ++R Sbjct: 177 NKIR 180 >gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus ATCC 19977] gi|169239592|emb|CAM60620.1| Putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus] Length = 296 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AHT DDQ ETV + R G G + +D + W RPFL RR + RS+ Sbjct: 94 VLLAHTLDDQAETVLLGLGR-----GSGARSIAGMRPWD-DPW-GRPFLDRRRTETRSYC 146 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + I+ EDP N D RF RVR+R V Sbjct: 147 DELAITAWEDPHNVDSRFVRVRLRHEV 173 >gi|148241171|ref|YP_001226328.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307] gi|147849481|emb|CAK26975.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307] Length = 337 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DS+ L +L R + +H R+ A +++ V ++ Sbjct: 36 LLIAISGGQDSLALTR---LLLDLREQHHWQLQLWHGNHNWRQDAAANAQHLQQVAAQWG 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V ++P AAAR+ RY + A+T + L++T HT D+ ET+ R Sbjct: 93 LPLTV---DCAEPAPKSEAAARQWRYERLQRQAETSSCPLVLTGHTATDRAETLLFNLIR 149 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GLS + T + + RP L R D ++ Q + D +N D +F R Sbjct: 150 --GADLTGLSSLRQTRPLGAGITVVRPLLAFSRADTQACCEQLGLLVWHDITNADRQFSR 207 Query: 202 VRVR 205 R+R Sbjct: 208 NRLR 211 >gi|154175317|ref|YP_001408589.1| PP-loop family protein [Campylobacter curvus 525.92] gi|112803929|gb|EAU01273.1| PP-loop family [Campylobacter curvus 525.92] Length = 330 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 60/313 (19%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS AL +L+D G F VD+ R +KDEV + ++ Sbjct: 19 LLAFSHGVDS----TALFYILNDAGVG---FDIAIVDYNERAQSKDEVASARALAAKFDK 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 S S+ + AR+ARY +E ++ AH DD+ E M+ Sbjct: 72 KCFTKSVNLSR--SNFECTARKARYEFFAEICAKNGYKNLILAHQLDDRFEWFLMQ---- 125 Query: 143 YAEKGMGLS---GMCD---TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 KG GL+ GM D YD I RP L+ ++ + +FL +R + + D +N Sbjct: 126 -LAKGAGLNELLGMSDFERRKDYD----ILRPLLKFKKSQLEAFLKERGLKYFIDETNFS 180 Query: 197 DRFERVRVR---------RFVRDIDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVHM 246 +F R +R RF + + + L Q LR +A + + K M Sbjct: 181 HKFRRNFMRQNFSEPFLARFSNGV-IKSFELLQSDAQTLRPSFTSAADKIYLVKKDESAM 239 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 R + + + I G +S + ER + ++GCV G+ Sbjct: 240 RGVDKVCK-------------------ILGVLMSEAQRKECERCL------EKGCVISGK 274 Query: 307 VVIDRRANFLWIT 319 V + NF+ +T Sbjct: 275 VAVGANENFILVT 287 >gi|190575333|ref|YP_001973178.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a] gi|190013255|emb|CAQ46889.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a] Length = 442 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 13/185 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LV SGG DS + LH + A+ V H L+ A D V + C Sbjct: 26 APLLVGYSGGVDST---VLLHWLWRCAQTSGTALRAVHVHHGLQPDADDWVLHCQQQCDA 82 Query: 80 LRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I +V V +N TGL + + A+ + A DDQ ET + Sbjct: 83 WGIELAVHRVQVENG---TGLGTEGAARQARRAAFAAELREGETLALAQHQDDQAETFLL 139 Query: 138 RSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R+ R A GL+ M + L + LW RP L R + + Q + W EDPSN + Sbjct: 140 RALR--ASGVDGLAAMSTHSRLGEHPLW--RPLLAVPRSALLDYARQHALRWIEDPSNAE 195 Query: 197 DRFER 201 D +R Sbjct: 196 DHADR 200 >gi|313889520|ref|ZP_07823166.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN 20026] gi|313122132|gb|EFR45225.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN 20026] Length = 427 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 18/187 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH+ + KI + V+H R+ + E Y+ ++ Sbjct: 22 VLIAVSGGVDSMNLLHFLHTF---KDQFKISIAIAHVNHKQRKASDLEEDYLKSWANQHD 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V +K + + AR+ RY T ++TAH DDQ+ETV+MR R Sbjct: 79 IPIFVDYFKGNFSEQ----RARDFRYQFFKRIMSQGGYTALVTAHHADDQVETVFMRLIR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI-RSFLLQRNISWCEDPSNTDDRFE 200 + L+G+ + + I RPFL ++ + + F ED SN + Sbjct: 135 GSLLR--HLAGIKEVQPFAGGQLI-RPFLHFHKKTLPQPF-------HFEDSSNLGLDYF 184 Query: 201 RVRVRRF 207 R RVR F Sbjct: 185 RNRVRNF 191 >gi|320528645|ref|ZP_08029798.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204] gi|320131011|gb|EFW23588.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204] Length = 401 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 26/223 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVAVS G DSM LL + D I + V++ R A +E Y+ C + Sbjct: 9 LVAVSSGPDSMALL----QMCID---AGIDCAVAHVNYHHRPEADEEENYIRSFC----V 57 Query: 83 AHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + +++P T AAAR+ RY E + ++ H DD LET M+ Sbjct: 58 KKGIPIFVHNEPFTYTGNFEAAARDLRYRFFVEIVRYEGFQGVLIGHHQDDLLETYIMQE 117 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 ++ + GL + +++ + RP L +E++ + + + + D +N D + Sbjct: 118 SKNIVPEYYGLRE--EMLMH--GVLFKRPLLHVAKEELVRYCKEHQLHYYIDATNLSDEY 173 Query: 200 ERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAV 234 R ++R F R+ L + + Q+ R +V + Sbjct: 174 TRNQIRHQIVEPMTSFERNAYLREIKQRNAVLQERRCRVKTYI 216 >gi|75906734|ref|YP_321030.1| PP-loop [Anabaena variabilis ATCC 29413] gi|75700459|gb|ABA20135.1| PP-loop [Anabaena variabilis ATCC 29413] Length = 342 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ L+ L + + + DH R ++ +V ++ Sbjct: 26 LLVAVSGGQDSLCLIKLLLDLQLKWGW---ELGIAHCDHRWRVDSQANADHVKNLSETWG 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + + SKP A ARE RY +S A+ N I+T HT D+ ET+ R Sbjct: 83 VSFYLET--ASKP-INSEATAREWRYETLSAIAQAYNYEYIVTGHTASDRAETLLYNLMR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL + N+ + RP L R+ F + + ED +N D ++ R Sbjct: 140 GTG--ADGLQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKYAR 197 Query: 202 VRVRR 206 R+R+ Sbjct: 198 NRIRQ 202 >gi|289706997|ref|ZP_06503332.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58] gi|289556322|gb|EFD49678.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58] Length = 392 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 10/192 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA+SGG+DS+ L +A ++ R ++ A VDH L+ + +DV L Sbjct: 69 LVALSGGADSLALAVACAVLVGTRDGARLGPIGAAVVDHGLQSGSDAVAAAAADVARILG 128 Query: 82 IAHSVVSW-----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +A V+ P+ A + +++TAHT DDQ E V Sbjct: 129 LAPVTVTRVEVARTGDGPEA--DARRARRVALAAAARDARPGGAVVLTAHTADDQAEQVL 186 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + L+G+ + RP L R D + ++W EDP N D Sbjct: 187 LGLARGSGTRS--LAGIPARGTLPGGAAVVRPLLGLARADTEAICRWAGLTWFEDPHNRD 244 Query: 197 DRFERVRVRRFV 208 R RVR V Sbjct: 245 PALLRSRVRTRV 256 >gi|197106556|ref|YP_002131933.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Phenylobacterium zucineum HLK1] gi|196479976|gb|ACG79504.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Phenylobacterium zucineum HLK1] Length = 411 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG DS+ L + + +++DH L + + RL Sbjct: 24 LAVAVSGGGDSVALALIAEGWAR---RSRRDLLLLTLDHGLNPDSAAWTGRCEALAQRLG 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ- 140 ++W KP +GL AAAR AR+ L++E A+ A +I+ HT DD E MR+ Sbjct: 81 RPFRALAWTGPKPASGLPAAARAARHRLLAEAAREAGARVILMGHTADDVAEAQVMRAAG 140 Query: 141 ------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R +A G +++ RP L RR ++R +L R +W EDP+N Sbjct: 141 ATTPEPRVWAPSPAWPEGR--------GVFVLRPLLDVRRAELRDWLSARGETWIEDPAN 192 Query: 195 TDDRF 199 D RF Sbjct: 193 ADPRF 197 >gi|86152849|ref|ZP_01071054.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843734|gb|EAQ60944.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter jejuni subsp. jejuni HB93-13] Length = 321 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ R H + K++ K Q+ AR+ RY + + ++ AH +DQ Sbjct: 60 AKELALRF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 E M+ R G GL+ GM C+ N + RP L +++I SFL +++I Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + D SN ++++ R +R+ Sbjct: 169 FYFHDESNENEKYFRNYIRK 188 >gi|266624801|ref|ZP_06117736.1| ExsB family protein [Clostridium hathewayi DSM 13479] gi|288863320|gb|EFC95618.1| ExsB family protein [Clostridium hathewayi DSM 13479] Length = 243 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL AL + + F + SAI+VD + ++ V ++C Sbjct: 25 HIAVGISGGKDSLTLLYALQGL---KQFYPKHFELSAITVDLGFGDF---DLSPVKELCE 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 R + +++VS + ++ ++ A + R +++ A + I AH +D + Sbjct: 79 RFSVPYTIVSTEIGKILFETRKESNPCALCAKLRKGALNDAAIKLGCNKIAYAHHREDLI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G + T L L + RP + + D+ F + ++ C++P Sbjct: 139 ETMLL----SLIYEGRFYAFSPSTYLDRTGLTVIRPMIYVKEADVIGFKNKYDLPVCKNP 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R V++ + ++ Sbjct: 195 CPVDGHTKREYVKKLTKTLE 214 >gi|254421293|ref|ZP_05035011.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335] gi|196188782|gb|EDX83746.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335] Length = 232 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 20/206 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L +HIL+AVSGG DS+ L L S LS + + + + I DH R + + +V Sbjct: 26 RLLPKDSHILIAVSGGQDSL-CLARLLSDLSSKWYWSLGW--IHCDHGWRTDSTENAAHV 82 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +I V + +K AAAR RY + A+ + ++T HT D+ E Sbjct: 83 VKLAEAWQIP---VRIELAKGLAKTEAAARGWRYEVFERVAREQGYSHVVTGHTKSDRAE 139 Query: 134 TVYMRSQRDYAEKGMGL--------------SGMCDTILYDLNLWISRPFLRCRREDIRS 179 TV R G+G G I + + RP L R + Sbjct: 140 TVLYNLIRGAGTDGLGTLRWTRPLSLAACLAQGDNLDIKQSQAITLVRPLLDFTRAETAH 199 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 F ++I D SN D F R R+R Sbjct: 200 FCQDQHIPVWIDSSNQDLNFRRNRIR 225 >gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] gi|284062456|gb|ADB73394.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] Length = 341 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 9/201 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR +R+ P +L A SGG+DS+ +A R G ++ I+VDH L+ + Sbjct: 14 AVRPGLRASDRP--VLAACSGGADSV--ALAAALAFEARHAG-VRAGGITVDHGLQPGSA 68 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + L + +V G AAR ARY ++ A + A + + HT Sbjct: 69 ERAERTAQLLRGLGLDPVLVRRVAVAAGGGPEGAARTARYEALAAAAAQLGARVAL-GHT 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + + +GM D W RP L RR R + + Sbjct: 128 LDDQAETVLLGLGRGSGPRSV--AGMVPERTADGTTWW-RPLLGVRRATTREACADQGLP 184 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 +DP N D + R R+R V Sbjct: 185 VWDDPWNADPAYTRARLRGEV 205 >gi|289522999|ref|ZP_06439853.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503542|gb|EFD24706.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 469 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 15/187 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS+ LL L ++ GK+ + RE+ +D V +V D+ + Sbjct: 39 VVAGISGGPDSVALLWMLVNLWR----GKVIVAHFEHGIRGRESIEDAV-FVRDLAFNFQ 93 Query: 82 ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 SV + + G+ AAR RY + + A I H DD +ETV Sbjct: 94 CPFFMESVPVPQLRQKGEGIEEAARRLRYEFLEKIRSENKAAYIAVGHHNDDLVETVIFN 153 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G L G+ + Y I RP + R +I L +I+W ED +N D Sbjct: 154 VIRGTGLRG--LQGIPEKRGY-----IVRPLIDFTRREITDLLEGLSINWREDSTNVDVN 206 Query: 199 FERVRVR 205 + R ++R Sbjct: 207 YARNKIR 213 >gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500] gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500] Length = 630 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I +AVSGG DSM L + R +++ A VDH RE + +E VS S Sbjct: 42 PRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFVVDHKFREESTEEAHKVSSWLS 101 Query: 79 RLRIAHSVVS--WKNSKPQTGLMA---AAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I V++ W+ + MA AR RY + + ++ H DD +E Sbjct: 102 NMDILSEVLTLDWEAGETPKKKMAFETLARTKRYQALGKACFKNQLNTLLIGHHLDDNVE 161 Query: 134 TVYMR 138 T +R Sbjct: 162 TGLLR 166 >gi|282866364|ref|ZP_06275409.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE] gi|282558760|gb|EFB64317.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE] Length = 359 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L+ + V + +R Sbjct: 60 VLVACSGGADSMALASAL--AFESRKL-PVRAGGITVDHNLQPGSGLRAAEVVARLTEMR 116 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + A +V ++ P+ A YA + + A+ A ++ HT DDQ ETV + Sbjct: 117 LDPVEAVAVHVGRDGGPEAAARDAR----YAALDDAAERHGAAAVLLGHTRDDQAETVLL 172 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + LSGM RPFL+ R+ R + +++ +DP N D Sbjct: 173 GLARGSGIR--SLSGMASA--SGPAGRYRRPFLQLDRQTARKACMVQSLPVWDDPHNIDP 228 Query: 198 RFERVRVR 205 + R R+R Sbjct: 229 AYTRSRLR 236 >gi|319442401|ref|ZP_07991557.1| hypoxanthine phosphoribosyltransferase [Corynebacterium variabile DSM 44702] Length = 538 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 24/191 (12%) Query: 22 ILVAVSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++ VSGG DS+ L A +H+ L+ + ++VDH L++ + + C L Sbjct: 32 VVCGVSGGGDSLALAAACVHAGLA--------VTTVTVDHRLQDGSDRVAARAAQQCRDL 83 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +VV+ P G AR ARY + E A + ++ AHT DD E + + Sbjct: 84 GATATVVTVDVDGPGEG---PARAARYRALGEAA---DGRPVLVAHTADDDAEGLLLSLT 137 Query: 141 RDYAEKGMG-LSGM----CDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G G L+G+ D + D ++ RP L R R + + +DP N Sbjct: 138 RG---SGTGSLAGLREITGDHPVVDAGASFLGRPLLAATRRQTRGSCAELGLGIWDDPHN 194 Query: 195 TDDRFERVRVR 205 R RVR Sbjct: 195 EHPEILRSRVR 205 >gi|298373197|ref|ZP_06983187.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str. F0058] gi|298276101|gb|EFI17652.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str. F0058] Length = 445 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 29/194 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDE--VRYVS 74 +LVAVSGG DS+ LL L + + +V HC LR E+ DE VR ++ Sbjct: 23 LLVAVSGGIDSVVLLDML---------VRCGYRC-AVAHCNFHLRGNESDNDEQFVRALA 72 Query: 75 ---DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 D+ +R ++ + KN + AAR+ RY KT + + AH +D Sbjct: 73 QKYDIPLFVRQFDTIQTAKND--NISIEMAARKLRYDWFEVLVKTNDFQSVAVAHHKNDN 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R G GL G+ + + RP L RE+I + NI C D Sbjct: 131 AETVLLNMAR-----GSGLQGLAG--IRARRGSVVRPLLCFDREEIELYAKLNNIEHCTD 183 Query: 192 PSNTDDRFERVRVR 205 +NTD F+R R+R Sbjct: 184 RTNTDTEFQRNRIR 197 >gi|33241260|ref|NP_876202.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|61216600|sp|Q7V9L9|TILS_PROMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33238790|gb|AAQ00855.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 336 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L Y + +L++VSGG DSM LL +L + + K DH ++ + + Sbjct: 29 LPYGSSLLISVSGGQDSMALLKL---ILDLQRIYEWKVHVWHGDHGWHNQSRQIAEELEE 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHTF 128 C ++ S + +K + AR RY + + AKT++ ++T HT Sbjct: 86 WCKCQKL--SFFCNRTNKQKVSTEEDARNWRYKSLIQQAKTLSKESPSLPCERVLTGHTA 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D+ ET M R K GLS + + + + + RP LR R++ + ++ Sbjct: 144 NDRTETFIMNLARGAHLK--GLSSLREDRTLETKIQLIRPILRFSRQETIQICDEMDLPI 201 Query: 189 CEDPSNTDDRFERVRVR 205 DPSN++ + R ++R Sbjct: 202 WIDPSNSNIAYSRNKIR 218 >gi|229829758|ref|ZP_04455827.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM 14600] gi|229791747|gb|EEP27861.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM 14600] Length = 509 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 19/194 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 +L+AVSGG+DS+ LL +++ R + + + V+H LR E+ +D +V +C Sbjct: 24 LLLAVSGGADSVALLRL--ALIWRRKY-DLLLRVLHVEHGLRGRESLEDAA-WVRKLCRE 79 Query: 80 LRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + VV + ++ ++ AAR RY + E A + I+ AH +D ET Sbjct: 80 HGLPCQVVPVDVRALAETEGRS-EEEAARILRYQALEEAAARWDGAKIVLAHNLNDAAET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + +G GL G+ + I RP L R +I +L W D SN Sbjct: 139 LLF-----HLVRGTGLEGLA--AIPPKRGRIVRPLLAASRREIEDWLRDLGQEWRRDRSN 191 Query: 195 TDDRFERVRVRRFV 208 +D + R R+R V Sbjct: 192 EEDTYSRNRIRHQV 205 >gi|107028745|ref|YP_625840.1| tRNA(Ile)-lysidine synthetase-like [Burkholderia cenocepacia AU 1054] gi|116690096|ref|YP_835719.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424] gi|105897909|gb|ABF80867.1| tRNA(Ile)-lysidine synthetase-like protein [Burkholderia cenocepacia AU 1054] gi|116648185|gb|ABK08826.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424] Length = 473 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + +RL +A S + P+ G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ +++ RP LR R + Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + Q ++W +D SN D R+ R +R V L AL + F+D Sbjct: 182 RYAEQHALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224 >gi|119897207|ref|YP_932420.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72] gi|226695534|sp|A1K3X8|TILS_AZOSB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|119669620|emb|CAL93533.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72] Length = 448 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 11/189 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79 + A+SGG DS+ + + L + L R FG +A+ V H L A ++ + +C+ Sbjct: 24 LCCALSGGVDSV-VTLDLLTRLQPR-FG-FTLTAVHVHHGLSPHADAWAQFCARLCAARG 80 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L +A V Q GL +AAR R+A + + ++ H DDQ ETV R Sbjct: 81 LTLAIRRVEVPTDTGQ-GLESAARARRHAELV----ALPCDWLVFGHHQDDQAETVLFRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+G + + + + RP L R I ++ + W ED SN D RF Sbjct: 136 FRGSGLRGLGAMAAVEPGQHAMPGKL-RPLLDIGRAGIVAYARAAGLEWIEDESNADCRF 194 Query: 200 ERVRVRRFV 208 R +R V Sbjct: 195 TRNALRHKV 203 >gi|254247829|ref|ZP_04941150.1| PP-loop [Burkholderia cenocepacia PC184] gi|124872605|gb|EAY64321.1| PP-loop [Burkholderia cenocepacia PC184] Length = 473 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + +RL +A S + P+ G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ +++ RP LR R + Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + Q ++W +D SN D R+ R +R V L AL + F+D Sbjct: 182 RYAEQHALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224 >gi|320101607|ref|YP_004177198.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644] gi|319748889|gb|ADV60649.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644] Length = 517 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 81 RIAHS----VVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTAHTFDDQLE 133 R+AH+ VV + S P G+ A R AR ++ A A ++ AHT DDQ E Sbjct: 116 RLAHALGWPVVVERWSDPPQGIAPAEAPLRAARLEFLARVASHHQARAVVLAHTRDDQAE 175 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV R R +G+G G+ + + RP L R +R +L W +DP+ Sbjct: 176 TVLQRVLRGCGPRGLG--GIPPRRRLTQGVDLLRPLLEVPRACLRDWLTAIGQPWHDDPT 233 Query: 194 NTDDRFERVRVR 205 NTD R +R Sbjct: 234 NTDQHRTRAWIR 245 >gi|282890463|ref|ZP_06298986.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499460|gb|EFB41756.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 247 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 6/164 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS+ LL L ++ S R F + A+ V A + Y+ +C+RL Sbjct: 38 IAIALSGGKDSLALLFLLKAI-SGRGFPPFELFAVHVHGAFSCGAGVNLDYLRAICTRLE 96 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + +RE R L+ E AK++ AT I H DD +T+ M Sbjct: 97 IPFLMRESTQTLESLECYGCSRE-RRRLLFEAAKSVGATTIAFGHHRDDSAQTLLM---- 151 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 + K + + + + + I RP + ++I +F Q Sbjct: 152 NLLHKAEFAANLPKLHMREYGVTIIRPLIYVAEKEISTFAEQHG 195 >gi|310779129|ref|YP_003967462.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926] gi|309748452|gb|ADO83114.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926] Length = 446 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 24/214 (11%) Query: 3 LSPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + IE VR FV LV IL+ SGG DS+ L AL L + K++ + ++ Sbjct: 1 MEVIERVREFVLRNDLVGSGEKILLGFSGGPDSVFLFEAL---LDLKEEFKLEIAIAHIN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGL--MAAAREARYALIS 111 H LR DE + C +L + + + K Q G+ A R RY Sbjct: 58 HLLR---GDESDGDEEFCRQLAEKNGIKYYVKKADIKKYSRQHGIGEEEAGRSIRYDFFY 114 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + +K A + AH DDQ+ET R R G L G+ + I +++I RP Sbjct: 115 KISKEWGADKVALAHNKDDQVETFLFRMMR-----GTSLEGL-EGIPVRRDIFI-RPLSE 167 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 ++DI +L I + D SN ++ + R +R Sbjct: 168 VYKKDILGYLDSNKIEYRIDSSNLENTYTRNSIR 201 >gi|17228427|ref|NP_484975.1| hypothetical protein all0932 [Nostoc sp. PCC 7120] gi|61216693|sp|Q8YYB8|TILS_ANASP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|17130278|dbj|BAB72889.1| all0932 [Nostoc sp. PCC 7120] Length = 342 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ L+ L + + + DH R ++ +V ++ Sbjct: 26 LLVAVSGGQDSLCLIKLLLDLQPKWGW---ELGIAHCDHRWRADSQANADHVKNLAENWG 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + + +KP A ARE RY +S A+ N I+T HT D+ ET+ R Sbjct: 83 VSFYLET--ATKP-VNSEATAREWRYQALSAIAQAHNYQYIVTGHTASDRAETLLYNLMR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL + N+ + RP L R+ F + + ED +N D ++ R Sbjct: 140 GTG--ADGLQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKYAR 197 Query: 202 VRVRR 206 R+R+ Sbjct: 198 NRIRQ 202 >gi|329119473|ref|ZP_08248158.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200] gi|327464406|gb|EGF10706.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200] Length = 441 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 30/238 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I A+SGG DS+ + LH++ + + SA+ V H L A + + D C L Sbjct: 22 IEAALSGGLDSV---VLLHTLAQLQDSLNAELSAVHVHHGLHAQADCWLDFCRDYCEHLG 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V G+ AAAR+ARY + +A ++ AH DDQ ET ++ + R Sbjct: 79 IPLRVEKVTVRPAGQGIEAAARQARYQAFARS----SADILAAAHHADDQTETFFLAALR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + + + I RP L R ++ ++ + + + DP+N D + R Sbjct: 135 GGGLRALAAMPELRPLAENPAVHIWRPLLPHTRAELAAYAAEHRLDYITDPANADPAYLR 194 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R+R H ++++ Q L H+R+ +A+ QD L + Sbjct: 195 NRLR--------HDGLPRLRRIQ---------------PQLDAHIRAAVALLQDELAV 229 >gi|283852225|ref|ZP_06369498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B] gi|283572451|gb|EFC20438.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B] Length = 606 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 80/211 (37%), Gaps = 18/211 (8%) Query: 6 IESVRFFVRSLVYPAHIL------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ +F VR A L VA SGG DS+ LL L + F + A +D Sbjct: 35 LDVAKFLVRDCGLDAGTLRGATWLVACSGGPDSLVLLQILLLLAPRLGF---RLEAAHLD 91 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 H LR + E V C + + V+ + + GL A R ARY ++ Sbjct: 92 HGLRPGSGAEAARVRAFCRDRDVPCHLRRVDVADVSRTRKLGLEDAGRAARYGFFADLLA 151 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H +D E MR R G G + D + RP L R Sbjct: 152 ERPGAFVALGHQLNDLAEDQLMRLTR-----GTGWPALGGMAAVDPARRLVRPLLLTPRR 206 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 DI +F + DP+N D F R R+R+ Sbjct: 207 DIEAFAAALGLPVVHDPTNDDPAFLRNRLRQ 237 >gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] gi|254789041|sp|C1BA63|TILS_RHOOB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226242218|dbj|BAH52566.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] Length = 325 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH L+ + D + L A + V + GL AAAR+ARY + T Sbjct: 58 VDHRLQRGSADVADGAAARARTLGCASAEVLPVDVTGSGGLEAAARQARYEALDAGRGT- 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 ++ HT DDQ ETV + R G + GM YD + W RP L RR Sbjct: 117 --RPVLLGHTLDDQAETVLLGLSR--GSGGRSIWGMSP---YD-SPW-GRPLLGVRRAVT 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R + + EDP N+ F RVR+R V Sbjct: 168 RQACTELGLDPHEDPHNSSPDFVRVRLRTEV 198 >gi|153951323|ref|YP_001398742.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei 269.97] gi|152938769|gb|ABS43510.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei 269.97] Length = 321 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 16/196 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ L+ + + Q+ AR+ RY + + ++ AH +DQ Sbjct: 60 AKELA--LKFHKKIFIKYAPEFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQF 117 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCE 190 E M+ R G GL+ + Y+ N + RP L +++I SFL +++I + Sbjct: 118 EWFLMQLSR-----GAGLAEILGMQEYEQRSNYTLLRPLLFISKDEISSFLKEKDIFYFH 172 Query: 191 DPSNTDDRFERVRVRR 206 D SN ++++ R +R+ Sbjct: 173 DESNENEKYFRNYIRK 188 >gi|296158958|ref|ZP_06841786.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1] gi|295890833|gb|EFG70623.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1] Length = 476 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 19/225 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE+V F + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 IEAVGFSLSRLSATARIAIAFSGGVDSSVLLDA-----AVRVAGASRCVALHVHHGLSAH 68 Query: 66 AKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 A + + D +R R A VV +++ + AAAR+ARY ++ + Sbjct: 69 ADAWLAHC-DAFARERGVEFAAERVVVSRDTG--VSVEAAARDARYRVLEGMCASRGVAT 125 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSF 180 + A DDQ ETV + Q GL+ M L + RP L R + + Sbjct: 126 LWLAQHADDQAETVLL--QLLRGAGLAGLAAMAPEYLPAKASATRVRPLLHLLRAQLEQY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +R + W +D SN D R+ R +R V + AL + F+D Sbjct: 184 ASERALRWIDDESNADTRYARNALRHDV----MPALAVHFPGFRD 224 >gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36] gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36] Length = 479 Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 30/214 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA+SGG DSM L L S + + AI++DH R + E V + Sbjct: 21 PKKVAVALSGGPDSMLLTWLL-------SQCQFEIYAITIDHKYRTESSREALAVHERVK 73 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + S + ARE RY +++ ++ H DDQLE Sbjct: 74 NWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIPVLFLGHHRDDQLE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMC-------------DTILYDL--NLWISRPFLRCRREDIR 178 T R Q + + GL+G ++ L++ + I RPF ++DI Sbjct: 134 TFIQRLQGNSS--IFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILRPFWDYDKQDIL 191 Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI 211 NI++ DP+N D R +R + D+ Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDV 225 >gi|268316527|ref|YP_003290246.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252] gi|262334061|gb|ACY47858.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252] Length = 461 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 90/212 (42%), Gaps = 22/212 (10%) Query: 7 ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR F+ S L+ P ++V VSGG DSM LL L + + + D Sbjct: 4 ERVRRFIESEALLQPGQRVVVGVSGGVDSMVLLEVLRRLGYRPVVAHVNYRLRGAD---- 59 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREARYALISEHAKTINAT 120 + DE V C R R+ V + K +TG + A AR+ RYA A Sbjct: 60 -SDADEA-LVRRFCRRHRLPLRVAR-IDLKVRTGGRAIQATARQVRYAFFRRVALREGID 116 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRRED 176 ++ AH DDQ ET+ + R G GL G+ L N+W+ RP L R + Sbjct: 117 VVAVAHQHDDQAETLLLNLVR-----GSGLEGLLGMRPKRRLSRENVWLVRPLLPVSRAE 171 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 I ++ I W ED SN + R +R V Sbjct: 172 IEAWARAEGIPWREDVSNASLHYRRAVIRHEV 203 >gi|108773198|ref|YP_635739.1| hypothetical protein RF62 [Chara vulgaris] gi|122243769|sp|Q1ACK8|TILS_CHAVU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|77157854|gb|ABA61895.1| hypothetical protein RF62 [Chara vulgaris] Length = 330 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 17/195 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L+ IL+AVSGG DS + L+ +L R + + ++ DH + ++ YVS Sbjct: 21 LLSKQKILIAVSGGQDS---IFLLNLLLQLRFHWEWEIGIVNCDHMWNQFSQTASLYVSQ 77 Query: 76 VCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + ++ + + +S + + AR RY L A + T+I+TAHT D++ET Sbjct: 78 LACQMNLNYYQCISPSFYRKE----EKARSWRYKLFQRIAYLHDYTIIITAHTASDRVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++ KG GL G+ +Y + + RP L R ++ Q I Sbjct: 134 LFYN-----LFKGSGLHGLHSLTWKRQIYKKRIHLVRPLLSTTRGELSQIFKQIQIPLYL 188 Query: 191 DPSNTDDRFERVRVR 205 D +N + + R R+R Sbjct: 189 DSTNLNVKIYRNRIR 203 >gi|52353974|ref|NP_048910.2| hypothetical protein PBCV1_A554/556/557L [Paramecium bursaria Chlorella virus 1] gi|34482010|dbj|BAC84999.1| hypothetical protein [Paramecium bursaria Chlorella virus 1] gi|52221432|gb|AAC96914.2| similar to MesJ cell cycle protein [Chlorobium tepidum], corresponds to accession number AAG12421 [Paramecium bursaria Chlorella virus 1] Length = 498 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 21/201 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V P I +++SGG DSM L L + R F K + V++ R A DE +V+D Sbjct: 195 VKPGEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRACAYDEEYFVTDW 251 Query: 77 CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTI-NATLIMTAHT 127 + L SV + N KP +T R+ RY KTI + + H Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTY----KTISHGAFVAMGHN 307 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD LE + K L+GM DT++ + RP L ++DI + NI Sbjct: 308 KDDCLENILQNICS--GHKYDNLNGM-DTVVVQDGIKFFRPLLGVSKDDIIEYARGHNIP 364 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 + P++T F+R VR V Sbjct: 365 YL--PNSTPAHFKRGMVRNSV 383 >gi|15829251|ref|NP_326611.1| hypothetical protein MYPU_7800 [Mycoplasma pulmonis UAB CTIP] gi|61216719|sp|Q98PE3|TILS_MYCPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14090195|emb|CAC13953.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 286 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 23 LVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+AVSGG DSM LL H ++ V++ R ++K + + V D C + Sbjct: 3 LIAVSGGPDSMLLLDVFKHHDIV-----------VAHVNYNKRNSSKRDQKIVEDYCFKN 51 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I +++ + + + AR+ R+ + N I+ AH DD +ET + Q Sbjct: 52 NIKLEILNLTDYEVKGNFHDWARKKRFDFFKLVYEKYNCDEILLAHHKDDFVETFLI--Q 109 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199 ++ K + S + +N I+RPF+ + + I L + I + +D +N ++ + Sbjct: 110 KNQKRKPLYWSIKSKNFNFGMN--INRPFIHKYWKNQILKILDNKQIFFGQDETNKENIY 167 Query: 200 ERVRVR 205 R ++R Sbjct: 168 LRNKIR 173 >gi|284162492|ref|YP_003401115.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] gi|284012489|gb|ADB58442.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] Length = 308 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 24/132 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS+ L LH LS R ++ AI+VD + V+ + S L Sbjct: 51 IAIALSGGKDSVTLTYVLHKFLSKRR--DVELFAITVDEGIEGYRPPTVKIARKITSELG 108 Query: 82 IAHSVVSWK--------------NSKPQT--GLMAAAREARYALISEHAKTINATLIMTA 125 I H +VS+K + KP T G+ R L+++ A+ + AT + T Sbjct: 109 IEHIIVSFKDYFGMTLDEMVKLGDKKPCTYCGVF------RKYLLNKTAREMGATKLATG 162 Query: 126 HTFDDQLETVYM 137 H DD+++T+ + Sbjct: 163 HNLDDEVQTILL 174 >gi|325518591|gb|EGC98254.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. TJI49] Length = 303 Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 31/231 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGAALSGVPSDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + + G+ A+ARE RYA + + A + Sbjct: 69 ADAWVAHAEATAARLGVAFDAMHVEVPRDSGLGIEASARERRYAALDAMCERHGAAALWI 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC----------RR 174 A DDQ ETV ++ R G G++G+ RP C R Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLAAMAPR------YRPDGACVERVRPLLRLLR 177 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + + R ++W +D SN D R+ R +R V L AL + F+D Sbjct: 178 AQLERYAAGRELAWIDDESNGDTRYARNALRIDV----LPALAVHFPGFRD 224 >gi|332662835|ref|YP_004445623.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100] gi|332331649|gb|AEE48750.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100] Length = 449 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 25/194 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 L+AVSGG DS+ VL+D + I F+ ++ LR E + + R+V + R Sbjct: 23 LLAVSGGKDSV--------VLADLFYCSGIPFAIAHINFQLRGEESDGDERFVKALAKRC 74 Query: 81 RI------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + A + K T + AAR RY + + T N I+TAH +D +ET Sbjct: 75 EVECFTMLADTKAYGAEHKLSTQM--AARTIRYTWLEQTRATHNLDYIVTAHHLNDTVET 132 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + KG G+ G + +N + RP L R+ I ++ Q ++ ED SN Sbjct: 133 ILYN-----LAKGSGIKGNLG--IPAINGRVIRPLLFATRKSIDAYYTQEQLAHREDASN 185 Query: 195 TDDRFERVRVRRFV 208 + R +R V Sbjct: 186 AQVGYARNWIRHQV 199 >gi|28572333|ref|NP_789113.1| hypothetical protein TW171 [Tropheryma whipplei TW08/27] gi|61217337|sp|Q83I94|TILS_TROW8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28410464|emb|CAD66850.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] Length = 407 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVSDVCS 78 +L+A+SGG DS+ ++ V+ R G++ A+ VDH L+E + DEVR ++ + Sbjct: 31 VLIALSGGRDSLAAMVIASWVIP-RLNGRV--GAVVVDHGLQENSARIADEVRIRAEQFA 87 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135 I VS S+ G A+AR ARYA + + A I+ AHT DDQ ETV Sbjct: 88 LNPILIKRVS--PSRVSAGPEASARIARYAAFYDTLEETKAYAIILAHTLDDQAETVLLG 145 Query: 136 YMRSQRDYAEKGM 148 MR + +GM Sbjct: 146 LMRGSGPSSLRGM 158 >gi|78066850|ref|YP_369619.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383] gi|77967595|gb|ABB08975.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383] Length = 473 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 19/225 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALSGMAPDARISIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEASAARLGVAFESMHVDVPRDSGLGVEATARERRYAALDEMCERHGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSF 180 A DDQ ETV ++ R G G++G+ +++ RP LR R + + Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSVERVRPLLRLLRAQLERY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 Q +++W +D SN D R+ R +R V L AL + F+D Sbjct: 184 ATQHDLAWIDDESNHDTRYARNALRIDV----LPALAVHFPGFRD 224 >gi|11466394|ref|NP_038397.1| hypothetical chloroplast RF62 [Mesostigma viride] gi|12230820|sp|Q9MUR3|TILS_MESVI RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|7259537|gb|AAF43838.1|AF166114_50 hypothetical chloroplast RF62 [Mesostigma viride] Length = 310 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 18/190 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS+ L+ L + ++ ++ DH ++++ ++ + L Sbjct: 24 ILIAASGGQDSISLIKILVELQPQWNWD---LGIVNCDHSWNQSSRKGSSQIAQIAQLLN 80 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + +V+ Q ARE RY I + A + +I+TAH D++ET + Sbjct: 81 IDFYQIVTCH----QLINEEKAREWRYQKIEDIAFSNKYNVIVTAHNASDRIETFFFNLL 136 Query: 141 RDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G ++G+ ++L+ +L I RP L R ++++F+ + ++ D SN Sbjct: 137 R-----GTSITGV-QSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHLPLWPDTSNQS 190 Query: 197 DRFERVRVRR 206 F+R R+R+ Sbjct: 191 LFFKRNRIRK 200 >gi|291542480|emb|CBL15590.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus bromii L2-63] Length = 442 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 22/195 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VA+SGG+DS LL S+ + + A ++H +R E +DE + +C + Sbjct: 21 VIVALSGGADSTALLSVFVSL---KEKYNLSIYAAHINHNIRGDEATRDE-NFCKILCKK 76 Query: 80 LRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + S K K L R RYA E ++ + A I TAHT D E Sbjct: 77 FNTELFIKSVDVPTLAKQQKISEEL--CGRNVRYAFFEELSQKLCAK-IATAHTASDNAE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R G L+G+ + + I RP + R DI S+ + N+ + D + Sbjct: 134 TLIFNIAR-----GASLTGL--SAIPPKRGNIIRPLIELSRGDIESYCEENNLEYVTDST 186 Query: 194 NTDDRFERVRVRRFV 208 N D + R +R + Sbjct: 187 NLADDYTRNYIRHNI 201 >gi|254994427|ref|ZP_05276617.1| hypothetical protein LmonocytoFSL_16702 [Listeria monocytogenes FSL J2-064] Length = 153 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H + + K S ++H LRE A +E V C Sbjct: 24 LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANEQNVVEAFCESQG 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + V + Q G+ AR RY + + AH DDQ+ET+ M Sbjct: 81 IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140 Query: 138 RSQRDYAEKGMGLSG 152 R R A +G SG Sbjct: 141 RLVRGSA--SIGWSG 153 >gi|72163296|ref|YP_290953.1| helix-turn-helix, Fis-type [Thermobifida fusca YX] gi|123628619|sp|Q47KU2|TILS_THEFY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|71917028|gb|AAZ56930.1| helix-turn-helix, Fis-type [Thermobifida fusca YX] Length = 324 Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 22/204 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR +R L + +LVA SGG DS+ L A V G ++ ++VDH L+E + Sbjct: 14 AVRRALRDLPAGSLVLVACSGGPDSLALAGATAFVAP--RLG-LRAGGVTVDHGLQEGSA 70 Query: 68 DEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + V+ + L R+ SV P+ +A YA + + A A Sbjct: 71 ERADTVAALLRNLGFDPVERV--SVTVGTAGGPEAAARSAR----YAALEKTADVHQAAA 124 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV +R R + L+ M L RPFL R + Sbjct: 125 VLLGHTRDDQAETVLLRLARGSGAR--SLAAMATRTGRYL-----RPFLDVDRRTVHEAA 177 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 DP NTD + R RVR Sbjct: 178 SLMGFEPWSDPHNTDPAYTRSRVR 201 >gi|255527643|ref|ZP_05394503.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|255508656|gb|EET85036.1| PP-loop domain protein [Clostridium carboxidivorans P7] Length = 127 Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 10/102 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++VAVSGG DSM LL L+S+ R I+ A V+HCLR E+ KDE YV + C + Sbjct: 21 VIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNHCLRGNESDKDE-EYVKEFCEK 76 Query: 80 LRI---AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTI 117 L I + SV K K Q +A R ARY ++ K I Sbjct: 77 LNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKKEI 118 >gi|225378080|ref|ZP_03755301.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM 16841] gi|225210081|gb|EEG92435.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM 16841] Length = 248 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 14/198 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL A+ ++ R F FS I++ L D + V +C L+ Sbjct: 26 IAVGISGGKDSLTLLYAMANL---RRFYPKIFSLIAITVDLGYEGFD-LTPVKLLCEHLQ 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + +VS + N K + + + R +++ K + + AH DD +ET+ Sbjct: 82 VEYHIVSTEITKIIFNDKNEASPCSLCAKLRKGALNQKIKELGCNKVAYAHHMDDMIETM 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G S T L + L + RP + +++ F + N+ E+P Sbjct: 142 VL----SMIFEGRFYSFSPVTFLDRMELTVIRPMMYVSEAEVKGFRNKYNLPVVENPCPV 197 Query: 196 DDRFERVRVRRFVRDIDL 213 D +R + VR I+L Sbjct: 198 DGVTKRQYAKDLVRQINL 215 >gi|71906484|ref|YP_284071.1| PP-loop [Dechloromonas aromatica RCB] gi|71846105|gb|AAZ45601.1| PP-loop [Dechloromonas aromatica RCB] Length = 323 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 19/214 (8%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P F L + V +SGG DS+ LL +L+ F + AI V H L Sbjct: 13 PARVGAFLAARLAPSERLAVGLSGGCDSVVLL----HLLTRLGFAG-RLDAIHVHHGLSP 67 Query: 65 TAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A + +D C+ L + ++ VS ++ GL AAAR+ARY++ +E + + Sbjct: 68 NADAWGTFCADYCTGLGVPLTIRHVS-VDTASGLGLEAAARKARYSVFAE----VATDCL 122 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + H DQ ETV R G +GM + + R E I ++ + Sbjct: 123 LLGHHRSDQAETVLFNLLRGTGVTGA--AGMPAERQFGRLRLLRPLLASSRNE-IEAYAM 179 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 ++W +D SN D R F+R L AL Sbjct: 180 SAGLAWIDDESNADVSL----TRNFLRHEALAAL 209 >gi|313884543|ref|ZP_07818304.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola ACS-139-V-Col8] gi|312620327|gb|EFR31755.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola ACS-139-V-Col8] Length = 492 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 7/191 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG DSM LL + +L+ + + +H LR A + V C + Sbjct: 24 LVMGVSGGLDSMVLLDLMIKLLALKENQGKEIIVAHFNHHLRSDADLDASLVESFCHHHQ 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + W+ + AREARY + + +++TAH +D ET+ +R R Sbjct: 84 LTYFIGEWQEPS-HKNTESLAREARYHFFANVLAASQSQVLVTAHHSNDLAETLMIRLIR 142 Query: 142 DYAEKGM-GLSGMCDTIL-YDLNLWIS----RPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + KG+ G+ IL D ++ RP L + ++ + + + ED +N+ Sbjct: 143 GTSFKGLAGIRRYSQRILTTDQGQGVATDLVRPLLSISKAELLDYAEHFKLEYREDSTNS 202 Query: 196 DDRFERVRVRR 206 R RVR+ Sbjct: 203 SRHHLRNRVRQ 213 >gi|294625512|ref|ZP_06704140.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600181|gb|EFF44290.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 468 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +L+A SGG DS + LH + + + A+ V H L A + C Sbjct: 48 PGPVLLAYSGGMDSS---VLLHLLAAASRYRHAGLRALHVHHGLHADADAWAAHCQRTCD 104 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L++ +V + ++ +GL A + I + AH DDQ ET +R Sbjct: 105 ALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLR 163 Query: 139 SQRDYAEKGMGL--------SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + R +G+ SGM LW RP L R D+ ++ + W + Sbjct: 164 ALRASGPEGLAAMRPQRPFASGM---------LW--RPMLAHARADLLAYAHAHGLRWID 212 Query: 191 DPSNTDDRFER 201 DPSN D +R Sbjct: 213 DPSNADPHHDR 223 >gi|256372668|ref|YP_003110492.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009252|gb|ACU54819.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 306 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 29/176 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG+DS+GL L +FG + AI VDH LR + E V+ + L Sbjct: 37 VRVGVSGGADSLGLAALL-------AFGGKRVLAIHVDHGLRPGSAREGADVARQLAPLG 89 Query: 82 IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I SV+ + P L A AR AR + + A+ AHT DDQ ETV + Sbjct: 90 I--SVLERRVRVIPGPNLEARARSARLGALGDAAR---------AHTMDDQAETVLLNLL 138 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G GL G+ L+ P L RR ++ + DP N D Sbjct: 139 R-----GSGLVGIGAMEPGPLH-----PALGLRRSELARVCEAAGLVPLVDPMNQD 184 >gi|117927411|ref|YP_871962.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B] gi|117647874|gb|ABK51976.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B] Length = 398 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 95/211 (45%), Gaps = 10/211 (4%) Query: 3 LSP-IESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 LSP I +VR VR+ L A +L A SGG DS+ L A + + R ++ A++ Sbjct: 12 LSPAIAAVRHAVRTCLADLPAGALVLAACSGGPDSL-ALAAALAFEAPRRRPALRAGAVT 70 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +DH L+ + + R ++ L + + G AAAR ARYA + E A Sbjct: 71 IDHQLQPGSAERARQLARFLGELGLDPVEIRAVQVGRDGGPEAAARAARYAALDEVAAQC 130 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++ AHT DDQ ETV + R + ++GM + + RP L R Sbjct: 131 GAAAVLLAHTLDDQAETVLLGLTRGSGLR--SIAGMPER--FGPADRYRRPLLGIPRSVT 186 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R + + +DP N D F R R+R V Sbjct: 187 RRACRDAGLPFWDDPQNHDPAFTRSRLRHRV 217 >gi|213969135|ref|ZP_03397274.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1] gi|213926133|gb|EEB59689.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1] Length = 455 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS +L+ L + L+ R+ AI V H L+ A + VC L +A Sbjct: 40 VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 98 FESVRVK-VEPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 155 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211 Query: 204 VRRFV 208 +R V Sbjct: 212 LRSQV 216 >gi|57238476|ref|YP_179607.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|61216392|sp|Q5HSX8|TILS_CAMJR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|57167280|gb|AAW36059.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|284926661|gb|ADC29013.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni IA3902] gi|315058908|gb|ADT73237.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 321 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + H + K++ K Q+ AR+ RY + + ++ AH +DQ Sbjct: 60 AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 E M+ R G GL+ GM C+ N + RP L +++I SFL +++I Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + D SN ++++ R +R+ Sbjct: 169 FYFHDESNENEKYFRNYIRK 188 >gi|301383970|ref|ZP_07232388.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato Max13] gi|302064144|ref|ZP_07255685.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato K40] gi|302134071|ref|ZP_07260061.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS +L+ L + L+ R+ AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 88 FESVRVK-VEPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|285019212|ref|YP_003376923.1| cell cycle protein [Xanthomonas albilineans GPE PC73] gi|283474430|emb|CBA16931.1| putative cell cycle protein [Xanthomonas albilineans] Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 15/187 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA +L+ SGG DS + LH++ + + A+ V H L A + + Sbjct: 22 PAPVLLGFSGGLDST---VLLHALAQQPHYRQRGLRAVHVHHGLHPDADAWAMHCQQMSV 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + V+ + + + + AA L + H DDQ ET +R Sbjct: 79 ALAVPLQVLRVQVPRDRGDGLEAAARQARRAAFAQVLAHGEWLALAQHR-DDQAETFLLR 137 Query: 139 SQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R G+ LSG D L+ RP L R + ++ Q + W +DPSN Sbjct: 138 ALRASGPDGLAAMQPLSGFADGKLW-------RPLLTLPRSALHAYAQQHALRWIDDPSN 190 Query: 195 TDDRFER 201 D F+R Sbjct: 191 ADPGFDR 197 >gi|326792451|ref|YP_004310272.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427] gi|326543215|gb|ADZ85074.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427] Length = 457 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 24/192 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++ VSGG DSM LL H + + ++ + H +RE+A + V + C Sbjct: 25 LILGVSGGMDSMMLL---HYFYTYKEVYQVSLKVAHIHHGIRESADLDAALVEETCRAYH 81 Query: 82 IA---HSV-VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLE 133 I H+ + + + RE RY +L++ AK I+TAH +DQ E Sbjct: 82 IPFYRHNCNIKALAKQKKCSEEEIGREERYNFFISLLNPGAK------IVTAHNMNDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R KG+G G+ I RP L R++I S+ + + D + Sbjct: 136 TMMMRFFRGTDIKGLG--GILPK-----RGQIIRPLLDVTRKEIESYCKVHQVPFRHDET 188 Query: 194 NTDDRFERVRVR 205 N + R ++R Sbjct: 189 NFMPIYTRNKIR 200 >gi|28868757|ref|NP_791376.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato str. DC3000] gi|28851996|gb|AAO55071.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 455 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS +L+ L + L+ R+ AI V H L+ A + VC L +A Sbjct: 40 VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 98 FESVRVK-VEPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 155 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211 Query: 204 VRRFV 208 +R V Sbjct: 212 LRSQV 216 >gi|28493557|ref|NP_787718.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str. Twist] gi|61217341|sp|Q83MT2|TILS_TROWT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28476599|gb|AAO44687.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str. Twist] Length = 415 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVSDVCS 78 +L+A+SGG DS+ ++ V+ R G++ A+ VDH L+E + DEVR ++ + Sbjct: 31 VLIALSGGRDSLAAMVIASWVIP-RLNGRV--GAVVVDHGLQENSARIADEVRIRAEQFA 87 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135 I VS S+ G A+AR ARYA + + A I+ AHT DDQ ETV Sbjct: 88 LNPILIKRVS--PSRVSAGPEASARIARYAAFYDALEETKAYAIILAHTLDDQAETVLLG 145 Query: 136 YMRSQRDYAEKGM 148 MR + +GM Sbjct: 146 LMRGSGPSSLRGM 158 >gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314] gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314] gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314] gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314] Length = 483 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 91/233 (39%), Gaps = 36/233 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA+SGG DSM L L S K + AI++DH R + E V + Sbjct: 21 PKKVAVALSGGPDSMLLTWFL-------SQCKFEIYAITIDHKYRPESSREALSVYERVK 73 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + S + AR RY +++ + ++ H DDQLE Sbjct: 74 NWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCYDKDIPVLFLGHHRDDQLE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDT----ILYDLN-----------LWISRPFLRCRREDIR 178 T R Q + GL+G I DL+ + I RPF ++DI Sbjct: 134 TFIQRLQGN--SSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQVRILRPFWDYDKQDIL 191 Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI------DLHALYLKMKKFQ 224 NI++ DP+N D R +R + DI H+ YL + K Q Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHSPYLLIDKSQ 244 >gi|257063279|ref|YP_003142951.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM 20476] gi|256790932|gb|ACV21602.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM 20476] Length = 361 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 32/225 (14%) Query: 6 IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR + RS+V +L+ VSGGSDS L A + + G + + V+H L Sbjct: 8 IDRVRTLIDDRSMVRTGSPVLLMVSGGSDSTALAYAAAELRDEGRLGTVTM--LHVNHKL 65 Query: 63 RETAKD-EVRYVSDVCSRLRIA--HSVVSWKNSKPQTGLM-AAAREARYALISEHAKT-- 116 R A D + + + + L I + G M A ARE RY + E ++ Sbjct: 66 RGEASDGDAAFTRRLSAHLGIPLFDCEIDVPALLANGGNMEATAREERYRAVREALESTC 125 Query: 117 ------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRP 168 + T HT DD++E+ +MR+ G G G+ + + I RP Sbjct: 126 SHTGYDLEDASAFTGHTADDRVESYFMRTI-----VGTGPGGLRAMSHVSWVNGCRICRP 180 Query: 169 FLRCRREDIRSFLLQRNIS--------WCEDPSNTDDRFERVRVR 205 L C R+++R ++ R + W ED +N D R VR Sbjct: 181 LLECSRDELREYIRSRPGAIADELGNLWREDATNGDTDHFRSYVR 225 >gi|319945971|ref|ZP_08020220.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641] gi|319747779|gb|EFW00024.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641] Length = 424 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 26/203 (12%) Query: 9 VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++F + ++ +H +L+A+SGG DSM LL L+ G I V+H R A Sbjct: 6 LQFCQKEGLFESHQKVLLALSGGVDSMTLLDWLYHY--QHQLG-IDLVLAHVNHHQRVEA 62 Query: 67 KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E R + ++ L++AH + S+ AR+ RY + K + I Sbjct: 63 DQEERGIRELAEAKHLPLKVAHFSGPFSESR--------ARQFRYDFFEKVMKEEACSAI 114 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH DDQ ET+ MR R + L G+ + + I RP L +++D Sbjct: 115 VTAHHMDDQAETILMRVIR--GSRPRHLKGIPLKQPFGQGMLI-RPLLHFKKKDFPE--- 168 Query: 183 QRNISWCEDPSNTDDRFERVRVR 205 I ED SN + R R+R Sbjct: 169 ---IFHYEDKSNRSLDYFRNRIR 188 >gi|168005786|ref|XP_001755591.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693298|gb|EDQ79651.1| predicted protein [Physcomitrella patens subsp. patens] Length = 521 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG DS+ LL H + S R + DH +++ + ++S V + LR Sbjct: 181 ILVAVSGGQDSICLL---HMLASLRDQWGWLLGVVYCDHRWSSSSRKQGSHISQVAASLR 237 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + P GL AR RY ++ A T I+TAHT D++ET+ R Sbjct: 238 INYYQAVTTSPVPSEGL---ARTWRYGILQRIALRHGFTSIVTAHTASDRVETLLYNLFR 294 Query: 142 DYAEKGMGLSGM 153 G GL G+ Sbjct: 295 -----GSGLHGL 301 >gi|61216635|sp|Q886M6|TILS_PSESM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 445 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS +L+ L + L+ R+ AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 88 FESVRVK-VEPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|284931702|gb|ADC31640.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. F] Length = 287 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 14/184 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ VSGG DS+ LL DR +IK A +++ R TA + VSD C + +I Sbjct: 10 LIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALHDQLIVSDYCLKNKI 60 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S S + AR+ RY + AH DD LET M+ + Sbjct: 61 PLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIMQYDK 120 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + GL D+ L ++ RP L +++I S+L + I + D SN ++R Sbjct: 121 NQEQLFYGLHQ--DSSYQSLKIF--RPLLNLWKDEILSYLEKDKIVYGVDESNFLLTYQR 176 Query: 202 VRVR 205 ++R Sbjct: 177 NKIR 180 >gi|330801783|ref|XP_003288903.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum] gi|325081048|gb|EGC34579.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum] Length = 569 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 12/199 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--- 77 +++++ SGGSDS+ LL L + + +I I+ DH ++ E+ + Sbjct: 125 NVILSCSGGSDSILLLYLLKQWIK-KGKKEITVRVITFDHKVQAEDIGEICKIIKKIIGR 183 Query: 78 SRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 S +H V++ N KP + GL R+ RY + ++ ++ D E+ Sbjct: 184 STKVFSHEVITL-NEKPLEFKNGLQQKLRDQRYKSLVSISEDNKENIVFYGTNLGDSFES 242 Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R ++ G+ GLSG+ + + N + RP + + DI +F + I + DP+ Sbjct: 243 FIHRVS---SKSGLDGLSGIREELKLSQNTTVYRPLIEISKNDITAFCNGKKIGFYSDPT 299 Query: 194 NTDDRFERVRVRRFVRDID 212 N D F R R + + Sbjct: 300 NLDLSFTRNLNRSLINQFE 318 >gi|15672001|ref|NP_266175.1| hypothetical protein L1002 [Lactococcus lactis subsp. lactis Il1403] gi|61216729|sp|Q9CJH4|TILS_LACLA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12722856|gb|AAK04117.1|AE006241_6 cell cycle protein MesJ [Lactococcus lactis subsp. lactis Il1403] Length = 423 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 26/207 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISV 58 FL ++ +F + + IL+A+SGG DSM L L L VL I+ + Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDLKEVLG------IELGLAHI 57 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 +H LRE +K E + ++ ++L++ V + + AR+ RY + N Sbjct: 58 NHGLREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGEN 113 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 +++TAH D +ETV MR + L G+ D + I RP L+ +E++ Sbjct: 114 YNILLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFAGGQLI-RPLLKFTKEELD 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 + ++ ED +N + R R+R Sbjct: 171 A------QTYYEDSTNQGLDYFRNRIR 191 >gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957] gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957] Length = 236 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 77/192 (40%), Gaps = 13/192 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEVRYVSDVCSRL 80 V VSGG S+ L L R F + + A+ DH LR + E + + Sbjct: 42 VGVSGGPHSLAL------ALLARDFARPLGGRVLALVADHGLRAESAAEAEWTRRTLAAQ 95 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I+ V+ + + AR+AR A + ++ DQ ETV R+ Sbjct: 96 GISARVLRLDLPG-GSAVQERARQARLAALLGACAAEGLPFLLLGQHAGDQAETVLFRAL 154 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G LSG+ I RP L + + L R +S DPSN D RF Sbjct: 155 RGSGATG--LSGIAPRRAA-AEAVILRPLLATPPIRLEALLAARGLSPLRDPSNADPRFA 211 Query: 201 RVRVRRFVRDID 212 RVR+R+ + D D Sbjct: 212 RVRLRQALADAD 223 >gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897954|gb|EFG77535.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 320 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 19/185 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ L A+ + L +A+ VDH L+ + D V++ +A Sbjct: 30 VALSGGPDSL-ALTAVAAQLR-------PTTAVIVDHGLQPGSGD----VAETARAQAVA 77 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + + G A + ++ HT DDQ ETV + R Sbjct: 78 VGCVAAQVVRVHVGNEGGPEAAARTARYAALSAYHGGPVLLGHTLDDQAETVLLGLGR-- 135 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G G+ + YD W RP L RR + + ++ +DP NTD RF R R Sbjct: 136 ---GSGVRSIAGMRPYDPP-W-GRPLLGVRRALTHAACAELGLTAWQDPHNTDRRFTRTR 190 Query: 204 VRRFV 208 +R+ V Sbjct: 191 LRQEV 195 >gi|16127457|ref|NP_422021.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15] gi|221236270|ref|YP_002518707.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus NA1000] gi|61216723|sp|Q9A3H7|TILS_CAUCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13424911|gb|AAK25189.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15] gi|220965443|gb|ACL96799.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus NA1000] Length = 408 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 18/184 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + V SGG DS+ LL +VL A+ VDH L+ + Sbjct: 20 APLAVGFSGGGDSLFLL---KTVLDWARPLDRPVLALVVDHQLQPQSTAWTAEAVAKARA 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L A ++W + KP+TGL AAAR AR+AL++ A+ A +++ HT D E V MR+ Sbjct: 77 LGAAALGLTWTDQKPRTGLPAAARRARHALLATAAREAGARVLILGHTASDLAEGVAMRA 136 Query: 140 Q-------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + R +A + G L++ RP L R +IR L + +W +DP Sbjct: 137 EGSSVSNPRAWAPSPVWPEGR--------GLFVLRPLLTLTRAEIRDALTREGETWLDDP 188 Query: 193 SNTD 196 +N D Sbjct: 189 ANLD 192 >gi|294495611|ref|YP_003542104.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] gi|292666610|gb|ADE36459.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] Length = 255 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI VA+SGG DS LL L +L + F +K +AI+VD + ++ + Y ++ + L Sbjct: 52 HIAVALSGGKDSSVLLYILAKILPE--FEGVKLTAITVDEGIPNYREETLTYAQELATFL 109 Query: 81 RIAHSVVSWKNS--KPQTGLMAAAREA--------RYALISEHAKTINATLIMTAHTFDD 130 I H +VS++ + P L+ + R ++ + +++ + T H+ DD Sbjct: 110 NIEHRIVSFRENFGAPLPDLLKKRNVSACTLCGVLRRKILEQETFSMDVPKLATGHSLDD 169 Query: 131 QLETVYMR 138 + ET M Sbjct: 170 EAETAMMN 177 >gi|51210035|ref|YP_063699.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata var. liui] gi|61216496|sp|Q6B8L1|TILS_GRATL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50657789|gb|AAT79774.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata var. liui] Length = 320 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 11/142 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRY 72 ++L+ P IL+A+SGG DS+ L+ + + F +I++ I +DH R +K +++ Sbjct: 18 KNLIKPLSILIALSGGKDSLCLVKLIEDFNNTYNHFSRIEY--IYIDHQWRSDSKQNIKH 75 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + S ++ ++ +K + A R RY I HA + +I+T H DQ+ Sbjct: 76 LLNYISITN--NNTYIYQINKMEIS-EANMRNIRYQAIVRHAIQNSHDIIVTGHNQTDQV 132 Query: 133 ETVYMRSQRDYAEKGMGLSGMC 154 ET + R G GL G+ Sbjct: 133 ETFLLNLMR-----GTGLEGLS 149 >gi|212529304|ref|XP_002144809.1| PP-loop family protein [Penicillium marneffei ATCC 18224] gi|210074207|gb|EEA28294.1| PP-loop family protein [Penicillium marneffei ATCC 18224] Length = 633 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 5/125 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I +AVSGG DSM L + R + A VDH RE + +E V+ S Sbjct: 42 PRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFVVDHKFREESTEEAHMVTKWLS 101 Query: 79 RLRIAHSVVS--W---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I V++ W ++ K Q AR RY + ++ H DD +E Sbjct: 102 NLDIQSEVLTLDWLPGESPKKQMAFETLARTKRYQALGIACLENRLNTLLIGHHLDDNVE 161 Query: 134 TVYMR 138 T +R Sbjct: 162 TGLLR 166 >gi|296131746|ref|YP_003638993.1| tRNA(Ile)-lysidine synthetase [Thermincola sp. JR] gi|296030324|gb|ADG81092.1| tRNA(Ile)-lysidine synthetase [Thermincola potens JR] Length = 471 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 14/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V VSGG DS+ L L + + ++ ++H R + A+ + V+ + +L Sbjct: 21 VVVGVSGGPDSVALAHILTRLAKE---FRLTIHIGHLNHMFRGKEAELDAASVARLAEKL 77 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V V S+ + A AR RYA + A + A I T H DDQ ETV Sbjct: 78 GLPCTVERIDVPAYLSEHRVSAQAGARYIRYAFFEKLADEVGANRIATGHHADDQAETVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G G+SG+ +I RP + R++I ++ ++ D SN Sbjct: 138 MNFLR-----GSGVSGLTGIPPVRQGKYI-RPLIEVSRQEIENYCRYFDLPVRFDASNAK 191 Query: 197 DRFERVRVR 205 + + R RVR Sbjct: 192 NIYLRNRVR 200 >gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480] gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480] Length = 717 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGGSDSM L ++S + A VDH R + E V+D +L Sbjct: 42 IGLAVSGGSDSMALAYLCSRLVSPDFIPGLDLKAYIVDHKFRPESSREAHLVADRIEKLG 101 Query: 82 IAHSVVS--WKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V++ W + T G AR RY + + + ++ H DD +ET M Sbjct: 102 IQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLLGHHQDDNVETALM 161 Query: 138 RSQRDYAEKGM 148 R + + + G+ Sbjct: 162 RVSKGHRKLGL 172 >gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON] gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON] Length = 475 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 19/213 (8%) Query: 2 FLSPIES-VRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 LS +++ V ++R ++ P I+V VSGG DS LL H ++S R + Sbjct: 6 ILSSVQNRVMLYIRKYKMIQPGQKIVVGVSGGPDSSALL---HVLMSLRGKLDAELIVAH 62 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISE 112 V+H +R + + ++ +YV + R+ ++ H V + A R RY + Sbjct: 63 VEHGMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQ 122 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + I AH DD ET+ + R G GL G+ + + I RP L Sbjct: 123 ICRYRGCNSIAVAHNKDDNAETILLHILR-----GSGLDGLVG--IRPVRGDIIRPLLDV 175 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R DI ++ ++ D +N D + R R+R Sbjct: 176 SRTDIEAYCAAAGMNPRRDYTNNDPSYMRNRIR 208 >gi|119493467|ref|ZP_01624136.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106] gi|119452711|gb|EAW33890.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106] Length = 338 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 13/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM L+ L + + + DH R + Y+ + + Sbjct: 30 LLVAVSGGQDSMSLIKLLLDLQPKWGWD---LAIAHCDHRWRSDSGANADYIEQLADSWQ 86 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + P+T A AR RY ++SE A T N ++T HT D+ ET+ R Sbjct: 87 LSFYRQT-AQKIPKTE--ADARHWRYQVLSEIALTHNYDYVVTGHTKSDRAETLLYNLIR 143 Query: 142 DYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 G+ + + + N+ + RP L R F + + ED +N Sbjct: 144 GSGSDGLQALAWKRPIDIEANVNHTNHNIGLVRPMLEILRSQTGQFCQDQQLKIWEDSTN 203 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 204 EDLSYARNRIR 214 >gi|146296231|ref|YP_001180002.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409807|gb|ABP66811.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ SGG DSM LL ++ + + + + ++H LR+ A ++ +V D C R Sbjct: 23 VLIGCSGGIDSMVLLDCIYRLKDEYE---LDITVAHLNHMLRQEAIEDELFVIDTCKRYN 79 Query: 82 IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + K + L A R ARY E ++ + I+ H +D +ET ++ Sbjct: 80 IKCITRSIDVRKIKEERKLSEEEAGRLARYNFFYELVNSLGLSKILLGHNKNDVVETFFL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL G+ + + ++RP + RE+I + + I + D +N Sbjct: 140 NLFR-----GSGLDGLAS--IPPVRDIVARPLIYMSREEIEEYAEENGIKYVIDKTNFSS 192 Query: 198 RFERVRVR 205 +++R VR Sbjct: 193 KYKRNVVR 200 >gi|302390614|ref|YP_003826435.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM 16646] gi|302201242|gb|ADL08812.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM 16646] Length = 471 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 15/189 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR- 79 +LV VSGG DS + + + FG I + ++HC R DE +V D+ + Sbjct: 23 VLVGVSGGPDS--VCLLHLLLRHREEFG-ISLAVAHLNHCFRGQESDEDETFVRDLAGQW 79 Query: 80 -LRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L V +TGL AAR RYA + A + AH +D+ ETV Sbjct: 80 GLPFYGEKVDVPAYIKKTGLSPEDAARRVRYAFFERVRRETGAGKVALAHNSNDREETVL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R G GL G+ I + +I RP + R+ I +L + I + D +N Sbjct: 140 MNIFR-----GTGLEGLV-GIEAVRDHYI-RPLIEVERDSIEDYLKREGIPYRIDSTNLQ 192 Query: 197 DRFERVRVR 205 + R ++R Sbjct: 193 TFYYRNKLR 201 >gi|326317608|ref|YP_004235280.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374444|gb|ADX46713.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 349 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRS 179 I A DDQ+ETV + R G G++G+ + + RP L DIR+ Sbjct: 151 IALAQHADDQVETVLLALSR-----GAGVAGLAAMPAFWRRGGMDWHRPLLDVAAADIRT 205 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +L R W EDP+N D+R+ R R+R + L AL +F+D Sbjct: 206 WLTARGEGWVEDPTNADERYTRNRIRARL----LPALEAAFPQFRD 247 >gi|326405617|gb|ADZ62688.1| tRNA Ile-lysidine synthase [Lactococcus lactis subsp. lactis CV56] Length = 423 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ +F + + IL+A+SGG DSM L L+ + + I+ ++H Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LRE +K E + ++ ++L++ V + + AR+ RY + N + Sbjct: 61 LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + I RP L+ +E++ + + Sbjct: 117 LLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFASGQLI-RPLLKFTKEELDAQI 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + ED +N + R R+R Sbjct: 174 ------YYEDSTNQGLDYFRNRIR 191 >gi|157953048|ref|YP_001497940.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella virus NY2A] gi|155123275|gb|ABT15143.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella virus NY2A] Length = 504 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 19/200 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V P+ I +++SGG DSM L L + R F K + V++ R A DE +V+D Sbjct: 195 VKPSEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRACAYDEEYFVTDW 251 Query: 77 CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + L SV + N KP +T R+ RY + + + + H Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDANIRTLYETYTRKVRY---NTYKSISHEAFVAMGHNK 308 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LE + K L+G+ + D N + RP L +++I ++ NI + Sbjct: 309 DDCLENILQNICS--GHKYDNLAGIVTVVKQDDNNFF-RPLLDVSKDEIIAYARYHNIPY 365 Query: 189 CEDPSNTDDRFERVRVRRFV 208 P++T F+R VR FV Sbjct: 366 L--PNSTPAHFKRGMVRNFV 383 >gi|78187463|ref|YP_375506.1| MesJ protein [Chlorobium luteolum DSM 273] gi|78167365|gb|ABB24463.1| MesJ protein [Chlorobium luteolum DSM 273] Length = 332 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 39/204 (19%) Query: 22 ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75 +LVAVSGG+DSM LL IA+ + L ++V HC LR D Sbjct: 30 VLVAVSGGADSMALLTLFIAVQAALG---------CTLAVVHCNFGLRGAESDADEAFVR 80 Query: 76 VCSRL-----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 C+RL +A SV + ++ + + AR RY E + T + T Sbjct: 81 ECARLMGLPCFVRQFDTLASSVAARRSVEEE------ARVLRYGYFQEIIEREGYTKVAT 134 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H D ET+ R G+ L + + I RP L R +I +L Q+ Sbjct: 135 GHHVGDNAETMLFNLFR-----GVTLPSLRG--IRSRRGHIIRPLLFMHRAEIEEYLKQQ 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208 + D +N DDR++R +R V Sbjct: 188 GTGYRTDATNADDRYDRNFIRNRV 211 >gi|322700481|gb|EFY92236.1| PP-loop family protein [Metarhizium acridum CQMa 102] Length = 653 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---- 54 F +E+V RF P + +A+SGG DSM + +++ R+ IK + Sbjct: 20 FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLI--RTHRGIKIADNPT 77 Query: 55 ----AISVDHCLRETAKDEVRYVSDVCSRL--RIAHSVVSWKN-----SKPQT--GLMAA 101 + VDH LR + E V+ +L + ++WK+ P + + + Sbjct: 78 EGAFGVIVDHRLRPESTLEAAEVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNIESV 137 Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 AR RY ++ + +NAT + AH DDQ ETV MR + +G Sbjct: 138 ARTKRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183 >gi|86609808|ref|YP_478570.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501245|sp|Q2JJ74|TILS_SYNJB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|86558350|gb|ABD03307.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 327 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 33/243 (13%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-- 70 + L++P +LVA SGG DS LL L + + I V HC + DE Sbjct: 18 QQLLHPGQRLLVAFSGGQDSFCLLQILRDLQPRWGW------QIFVLHCDHRWSADETEC 71 Query: 71 -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 R++ + + H+V + + P A AR RY + + A+T + + ++ HT Sbjct: 72 ARFLQGWLQQQGLPHAV---ETADPIRRDEAGARAWRYQQLEKWARTWDCSAVVMGHTAS 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--------WISRPFLRCRREDIRSFL 181 D+ ET R G G +G+ ++ + +L + RP L R + F Sbjct: 129 DRAETFLWNLLR-----GTGAAGL-SSLDWQRHLDDRDPTSAQVVRPLLGLYRWETEQFC 182 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 Q + D SN D R R+R V YLK L +N A +L ++ Sbjct: 183 QQHQLPVWPDRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEH 236 Query: 242 LTV 244 V Sbjct: 237 ELV 239 >gi|306828586|ref|ZP_07461780.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249] gi|304429194|gb|EFM32280.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249] Length = 425 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66 F++ + H +L+A+SGG DSM L L + + G I+ V+H R + Sbjct: 10 FLQKEYFKKHSKVLLALSGGLDSMFLFQLLSTY--QKELG-IELILAHVNHKQRSESDWE 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++E+R ++D + L I + S S+ ARE RY + K AT ++TAH Sbjct: 67 ENELRKLAD-AAELPIYITSFSGDFSE------VRAREFRYDFFRKIMKEAGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D + + RP L + D I Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-GIELIRPLLPFHKTDFPP------I 170 Query: 187 SWCEDPSNTDDRFERVRVR 205 ED +N ++ + R R+R Sbjct: 171 FHFEDQTNRENSYFRNRIR 189 >gi|281356157|ref|ZP_06242650.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548] gi|281317526|gb|EFB01547.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548] Length = 813 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 23/186 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEV-----R 71 + V SGG+DS L L R F +I + +AI DH LR R Sbjct: 16 GRLFVGFSGGADSTAAL------LVARRFQEIFHYRLTAIHFDHGLRGAESAAEAEAAQR 69 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + R+ +S P GL + AR AR + E + + ++ H D+ Sbjct: 70 FARNCAIEFRLVRLALS-----PGPGLESRARAARLDVWKELVRENPGSAVILGHHAGDR 124 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-WCE 190 E + +R R GL+ M D N+ RP L R +I FL + IS W Sbjct: 125 AENLLLRLAR--GSNATGLTSMRSRSEVD-NVIFLRPLLGFARTEIEEFLHENGISEWAR 181 Query: 191 DPSNTD 196 D SN + Sbjct: 182 DSSNAE 187 >gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Alistipes shahii WAL 8301] Length = 447 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 29/194 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 IL+ VSGG DSM ++++L + R + V HC LR E+ +DEV V D Sbjct: 23 ILLTVSGGVDSM-VMLSLFTRCGYR---------VGVAHCNFQLRGAESDEDEV-LVEDE 71 Query: 77 CSRLRIA--HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + A + + +TG + AAR RYA ++ T I AH DD + Sbjct: 72 AKKHGAAFYNRRFETRAEMERTGESMEMAARRLRYAWFDALSREHGYTAIAIAHHADDSI 131 Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET ++ R +G+ G+S ++ RP L R++I + +Q I + ED Sbjct: 132 ETFFINLLRGTGLRGLTGISTQVGKVI--------RPLLFASRKEILEYAVQNRIPFRED 183 Query: 192 PSNTDDRFERVRVR 205 SN ++ R ++R Sbjct: 184 SSNRSTKYLRNKIR 197 >gi|221632326|ref|YP_002521547.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM 5159] gi|221156484|gb|ACM05611.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM 5159] Length = 695 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 16/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS+GLL +L L+ R + +DH L+ ++ + S L Sbjct: 66 IIVGFSGGPDSLGLLWSLQH-LAHRGLAPTPIP-VHIDHGLQSSSSTMAERAIALGSELG 123 Query: 82 IAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + VV W K + GL A AR ARYA +++ A+ + I HT DDQ ETV Sbjct: 124 LVVRVVQVNVSLWPEYK-EGGLEAGARAARYAALAQVARAEGTSWITVGHTRDDQAETVL 182 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQRNISW 188 +R R G+ + L+ + + RP LR RR +R+ + + Sbjct: 183 LRLLRGAGLDGLAAMRPVTELRIPLDPLHREFASIRLIRPLLRIRRSVVRAAVELLGLQP 242 Query: 189 CEDPSNTDDRFERVRVRRFV 208 EDP+N +ER +RR V Sbjct: 243 LEDPTNLLLSYERNAIRRRV 262 >gi|85713119|ref|ZP_01044153.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] gi|85693067|gb|EAQ31031.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] Length = 447 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 7/194 (3%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 LV ++VA+ GG+DS +L L+ ++ + ++ AI +DH + + + Sbjct: 19 LVPGQQLVVALGGGADSQTVLDCLNRF--RQANPQYEYLAIHLDHHFHPQSPAWAKTIKG 76 Query: 76 VCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +A H K + A RE RY ++E T + +I+ +DQ+ET Sbjct: 77 SVESYGMASHFEDLIFIEKNRVSKEAMGRERRYQRLAE--LTADNAIILLGQHRNDQIET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ +R +G L+ M + + + RP L ++ I + + ++W ED +N Sbjct: 135 FLLQLKRGSGPRG--LASMAEVQPFVGQRKLVRPLLEVSKQAILKYAHEHQLTWIEDNTN 192 Query: 195 TDDRFERVRVRRFV 208 D R ER +R V Sbjct: 193 YDTRIERNYLRHKV 206 >gi|281490518|ref|YP_003352498.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis KF147] gi|281374336|gb|ADA63869.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis KF147] Length = 423 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 26/207 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISV 58 FL ++ +F + + IL+A+SGG DSM L L L VL I+ + Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDLKEVLG------IELGLAHI 57 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 +H LRE +K E + ++ ++L++ V + + AR+ RY + N Sbjct: 58 NHGLREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGEN 113 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 +++TAH D +ETV MR + L G+ D + I RP L+ +E++ Sbjct: 114 YNILLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFAGGQLI-RPLLKFTKEELD 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 + + + ED +N + R R+R Sbjct: 171 AQI------YYEDSTNQGLDYFRNRIR 191 >gi|322392415|ref|ZP_08065875.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780] gi|321144407|gb|EFX39808.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780] Length = 425 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 18/201 (8%) Query: 7 ESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E + F+ + H +++A+SGG DSM L L + + G I+ V+H R Sbjct: 5 EFLNHFLEKGYFKHHSRVVLALSGGLDSMFLFHLLSTY--QKELG-IELFLAHVNHKQRP 61 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +E + + ++ + V + + A AR+ RY + + + AT ++T Sbjct: 62 ESDNEEYELRKLAEQVGVPIYVAHFTGDFSE----ANARQFRYEFLKKVMRQTVATALVT 117 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ET++MR R + LS + + +D I RP L ++D Sbjct: 118 AHHADDQAETIFMRLIR--GVRLQHLSAIKERQEFDKGELI-RPLLSFYKKDFPE----- 169 Query: 185 NISWCEDPSNTDDRFERVRVR 205 I ED +N ++ + R RVR Sbjct: 170 -IEHFEDATNKENSYFRNRVR 189 >gi|282600859|ref|ZP_06257767.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176] gi|282571163|gb|EFB76698.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176] Length = 464 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 15/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++ A SGG+DSM LL+ L D +I+ A V+H +R A + +V+ C + Sbjct: 32 VIAACSGGADSMALLLFLLRRRRDL---EIEVLATHVNHGIRGVNAIADANFVTAFCRKN 88 Query: 81 RIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + V PQ AR RY + A A I TAHT DQ+ET+ Sbjct: 89 GVELFLYDAVKEGVQIPQQPSEEWARGLRYGWFDQLAVQEEA-FIATAHTMSDQVETILF 147 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G+ GM + + RP L R + ++ ++ +D +N D Sbjct: 148 RMAR-----GTGVHGMAG--IPPRRGYYIRPCLCLTRGETEAYCTALGQNYVQDETNAQD 200 Query: 198 RFERVRVR 205 + R R+R Sbjct: 201 TYARNRIR 208 >gi|295109538|emb|CBL23491.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus obeum A2-162] Length = 467 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 21/197 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79 ++ VSGG DSM +L L + D + + V+H +R E +D+ + V +C Sbjct: 25 VIAGVSGGPDSMVMLDILRRLQGDY---ECSLRVVHVNHGIRGKEALRDQ-KTVQKICEE 80 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT----LIMTAHTFDDQ 131 +I V S+ ++ + G A R R A E K ++ I AH +D Sbjct: 81 WKIPCCVYSYDVPRLAAEWKMGSEEAGRMVRRAAFEEEKKKCTSSDRKIRIALAHNKNDV 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ R G G+ G+ L +N RP L R +I ++ + I D Sbjct: 141 AETMLHHLAR-----GSGIRGL--AALKPVNGEFIRPVLCLERNEIVDYIKETGIPSMTD 193 Query: 192 PSNTDDRFERVRVRRFV 208 SN +D + R R+R + Sbjct: 194 SSNLEDDYTRNRIRHHI 210 >gi|291535600|emb|CBL08712.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Roseburia intestinalis M50/1] Length = 501 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 27/203 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 ++V +SGG+DS+ LL+ L + +I ++ AI V+H +R E ++ + +V ++C Sbjct: 21 VIVGLSGGADSVALLLVLLELRQ-----RIGYTLLAIHVEHGIRGEESRKDAAFVEELCR 75 Query: 79 R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFD 129 + RI V + G+ AAR RY + A+ + + I AH + Sbjct: 76 QKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHAN 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRN 185 D ETV + R G G+ GMC +L D ++ I RP L R I +L + Sbjct: 136 DNAETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCG 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + D +N D + R R+R + Sbjct: 190 QEYRTDGTNLDINYSRNRIRHHI 212 >gi|171688800|ref|XP_001909340.1| hypothetical protein [Podospora anserina S mat+] gi|170944362|emb|CAP70472.1| unnamed protein product [Podospora anserina S mat+] Length = 773 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 30/210 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS------VDHCLRETAKDEVRYVSD 75 I +A+SGG DSM L + + + K+ +S V+H LR+ +EV V Sbjct: 43 IALAISGGVDSMALAYLSTKIRTTDHWFKVADHPVSNPVAFVVNHDLRKGMVEEVDQVIK 102 Query: 76 VCSRLRIAHSV--VSW-----KNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAH 126 L+I V + W K P T + AR+ RY + A+ ++TAH Sbjct: 103 ALRGLKIFAYVAKIDWAQVLGKGVDPNTVPNIETLARQQRYRKLGTFARNCKTMSLLTAH 162 Query: 127 TFDDQLETVYMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQR 184 DDQ ET+ MR + +G+ G+ D YD++ F+ +D RS + Sbjct: 163 HEDDQYETILMRLLSGHGYRGLRGMRPATDIPECYDMHGIYQSGFI----DDQRS----K 214 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + W P +R ER ++ R +RD D H Sbjct: 215 HPVWNIYP----NRAERTKILRALRD-DFH 239 >gi|113953772|ref|YP_729309.1| MesJ-like protein [Synechococcus sp. CC9311] gi|113881123|gb|ABI46081.1| possible MesJ homolog [Synechococcus sp. CC9311] Length = 331 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 7/189 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A+SGG DSM LL L + + F DH + + + + C Sbjct: 31 LLIALSGGQDSMALLGLLLGLQHLHHW---HFQLWHGDHGWHDQSAATASELKEWCQGQE 87 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + +N++ TG A+AR RY ++ ++ ++TAHT D+ ET+ ++ R Sbjct: 88 LDLQIS--RNTRDHTGTEASARSWRYQELAALSQQFCCRTVLTAHTASDRAETLLLQLAR 145 Query: 142 DYAEKGMG-LSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+G L + D N + RP L R+D + DPSN + F Sbjct: 146 GTDLAGLGSLRPIRPLQNNDPNGTRLVRPLLTFSRDDTTQICQDLQLPVWLDPSNANPAF 205 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 206 SRNRIRNDV 214 >gi|257066129|ref|YP_003152385.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548] gi|256798009|gb|ACV28664.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548] Length = 456 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS L+ AL + + F I ++H R+ A + V + + Sbjct: 23 IIVGASGGPDSQFLIYALMELRKEMDFTII---LAHLNHLHRKEANFDESLVEETAEKFA 79 Query: 82 IA--HSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ S + G+ + A R RY E K + I AH DDQ ETV M Sbjct: 80 LSFRKKAASMDAYAKKYGISSEDAGRRLRYEFFREIQKEYPKSKIAIAHNLDDQAETVLM 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G G+ G+ + Y N I RP L ++ I +L I + D +N Sbjct: 140 RIIR-----GTGVEGLR-AMDY-RNGDIIRPILDIKKAMILDYLNSEQIPYAIDKTNFTT 192 Query: 198 RFERVRVR 205 + R ++R Sbjct: 193 DYTRNKLR 200 >gi|298246393|ref|ZP_06970199.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963] gi|297553874|gb|EFH87739.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963] Length = 487 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 ++VAVSGG+DS+ LL L S+ S + + ++ ++H LRE + + V+++ Sbjct: 22 LVVAVSGGADSLCLLHLLRSLCGSGKRYPTLQLHVAHLNHRLREPVSSQDAAAVAELART 81 Query: 80 ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + + L AAREARY + + I AH DDQ+ET+ Sbjct: 82 WGLPVTLGEEDIQVLAKRDHLSLEEAAREARYRFLR---RVAAGDPIAVAHHQDDQVETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + +G G++ M L I RP L R D ++ Q ++ ED SN Sbjct: 139 VL-----HWIRGGGIASMSG--LQPRQQDIIRPLLIFTRADTLAYCAQHGLTPLEDASNA 191 Query: 196 DDRFERVRVR 205 D R++R RVR Sbjct: 192 DLRYQRNRVR 201 >gi|225011777|ref|ZP_03702215.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A] gi|225004280|gb|EEG42252.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A] Length = 434 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 26/195 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 IL+A SGG DS SV++D ++ FS + LR E + + V C Sbjct: 21 ILLAHSGGLDS--------SVMADLLVKAQVPFSVAHCNFQLRGEESNSDAGLVKAWCFD 72 Query: 80 LRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I V + K K T L AAR+ RY+ E ++TAH +DQLE Sbjct: 73 NSIPFFSVEFATLEYKKYHKKSTQL--AARDLRYSWFDEIMDGYAFDFLVTAHHLNDQLE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + + R G G+SG+ + L RP ++++ + + + W ED S Sbjct: 131 TFLINTTR-----GTGVSGLLGIQEREHLL---RPLRSIPKKELIQYAKEHGVIWNEDSS 182 Query: 194 NTDDRFERVRVRRFV 208 N D + R VR V Sbjct: 183 NASDDYLRNEVRHHV 197 >gi|240144373|ref|ZP_04742974.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82] gi|257203624|gb|EEV01909.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82] Length = 501 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 27/203 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78 ++V +SGG+DS+ LL+ L + +I ++ AI V+H +R E ++ + +V ++C Sbjct: 21 VIVGLSGGADSVALLLVLLELRQ-----RIGYTLLAIHVEHGIRGEESRKDAAFVEELCR 75 Query: 79 R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFD 129 + RI V + G+ AAR RY + A+ + + I AH + Sbjct: 76 QKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHAN 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRN 185 D ETV + R G G+ GMC +L D ++ I RP L R I +L + Sbjct: 136 DNAETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCG 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + D +N D + R R+R + Sbjct: 190 QEYRTDGTNLDINYSRNRIRHHI 212 >gi|254574078|ref|XP_002494148.1| hypothetical protein [Pichia pastoris GS115] gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Pichia pastoris GS115] Length = 483 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 9/146 (6%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V+ F L P + +++SGG DSM L L + + G ++ A++V+H R+ ++ Sbjct: 14 VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLI 122 E V + + L + H ++ K + L AR RY I ++ + + Sbjct: 71 EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148 H +DQ+ET +R +++ GM Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTIFGM 156 >gi|254411176|ref|ZP_05024953.1| PP-loop family [Microcoleus chthonoplastes PCC 7420] gi|196181677|gb|EDX76664.1| PP-loop family [Microcoleus chthonoplastes PCC 7420] Length = 336 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 30/206 (14%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L+ P+ +LVAVSGG DS+ L+ L + K K+ +++ HC + R+ Sbjct: 21 RQLLAPSRPVLVAVSGGQDSLCLMKLLLDLQP-----KWKWQ-LAIAHC-------DHRW 67 Query: 73 VSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +D I SW + + T AAR+ RY + + A+T ++TAH Sbjct: 68 PADKGLADHIEQVAQSWAIPFYLEIADQVTTSEGAARQWRYQALGKIAQTYQYQYVVTAH 127 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----LNLWISRPFLRCRREDIRSFLL 182 T D+ ETV R G G+ G+ ++ + + + RP L R + F+ Sbjct: 128 TQSDRAETVLYNLIR-----GTGVDGL-QSLTWQRPLVAGVQLVRPLLEVTRRETGEFVE 181 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208 Q+++ D N D R+ R R+R+ V Sbjct: 182 QQHLPVWLDAYNQDLRYARNRIRQEV 207 >gi|15835107|ref|NP_296866.1| hypothetical protein TC0489 [Chlamydia muridarum Nigg] gi|270285278|ref|ZP_06194672.1| hypothetical protein CmurN_02488 [Chlamydia muridarum Nigg] gi|270289294|ref|ZP_06195596.1| hypothetical protein CmurW_02553 [Chlamydia muridarum Weiss] gi|301336674|ref|ZP_07224876.1| hypothetical protein CmurM_02540 [Chlamydia muridarum MopnTet14] gi|7190530|gb|AAF39335.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 259 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C ++ Sbjct: 36 HIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKI 94 Query: 81 RIAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ S+ S ++ P+ R L+ + AK++ AT + H DD ++T M Sbjct: 95 QVPLISIPSPYETENPEC---YTCSRIRRRLLFDAAKSVGATAVAFGHHRDDVIQTALMN 151 Query: 139 SQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180 AE +GM + + + + I RP + E IR F Sbjct: 152 LLHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEELIRKF 189 >gi|205356113|ref|ZP_03222880.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345956|gb|EDZ32592.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp. jejuni CG8421] Length = 321 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + H + K++ K Q+ AR+ RY + ++ AH +DQ Sbjct: 60 AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 E M+ R G GL+ GM C+ N + RP L +++I SFL +++I Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + D SN ++++ R +R+ Sbjct: 169 FYFHDESNENEKYFRNYIRK 188 >gi|329896365|ref|ZP_08271464.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088] gi|328921785|gb|EGG29156.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088] Length = 448 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 8/197 (4%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 +F +R + P L+ VSGG+DS+ L+ + ++ + + I +DH L + + Sbjct: 12 QFLLRYIDAP-RWLLGVSGGADSVALMAFVRALGDAHDIPPV--TVIYIDHGLHPDSANW 68 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V V +L A S + GL AAR ARY + ++MTAH D Sbjct: 69 GVLVERVSKQLSFAFEARSVVVVESGGGLEEAARAARYRAFED--LICEQDVLMTAHHQD 126 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQLET MR+ R + GL M + L I RP L R D+ + Sbjct: 127 DQLETFLMRAFRGAGPE--GLRSMLPERSLGVGLLI-RPLLGVARNDLVQIATAIAPDYV 183 Query: 190 EDPSNTDDRFERVRVRR 206 DPSN D R++R +R+ Sbjct: 184 LDPSNLDTRYDRGFLRQ 200 >gi|330807798|ref|YP_004352260.1| transcription factor, ExsB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375906|gb|AEA67256.1| putative Transcription factor, ExsB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 442 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 6/156 (3%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 SAI V H L+ A+ + VC+ L + VV+ +P + AAREARYA Sbjct: 54 LSAIHVHHGLQAVAEAWPDHCRSVCAALGVPLDVVT-VQVRPGASVERAAREARYAAFV- 111 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + +++TA DDQ ET+ R R KG+ + L RP L Sbjct: 112 -AAIHSDEVLLTAQHRDDQAETLLFRLLRGAGVKGLAAMPPQRPLGQGHLL---RPLLDV 167 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R ++ ++ Q+ +SW EDPSN D R R +R+ V Sbjct: 168 SRVELEAYARQQGLSWIEDPSNDDHRHARNYLRQRV 203 >gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis CGDNIH1] gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis CGDNIH1] Length = 433 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 157/385 (40%), Gaps = 41/385 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGGSDS+ L + R + A+ VDH LR + E + + + Sbjct: 41 VAVAVSGGSDSLALALLAARWQRSRGGSVL---ALVVDHGLRPESAFEAQLTLERLKTQK 97 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ + + + + AR ARY + + ++ H DQ ET+++R Q Sbjct: 98 IEARLLRLTTLQRGSAIASRARAARYDALIGACRNEGIIDLLLGHHRQDQAETIWIRQQA 157 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 A MGL+GM + ++ + RP L + +R+ + + W EDPSN R Sbjct: 158 GSAV--MGLAGMA-LLREAADIRLLRPLLAFNKASLRNVVRDYGLDWVEDPSNHSPAAGR 214 Query: 202 VRVRRFV-RDIDLHALYLKMKKFQDLRVKVN-NAVAMLIPKYLTVHMRSIIAISQDILNI 259 + R V RD L+M + +V +A + ++ +S + L+ Sbjct: 215 TQAREVVERDGPQQDQLLEMAHHAAMTRRVQEQTIAQELAATVSFLPEGYALVSGNTLSC 274 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVIDRRANFLWI 318 S L V AA+ G YR + + G R G RV+ R W+ Sbjct: 275 PS-----LAAVLAAVSGRN-----YRPRHARLTPFQHGLRPMTLEGIRVLPAGRLPGDWL 324 Query: 319 ---TRAVRNLPTLILYPEETTVWDGRYQFQNLSD-------SLIQIGPQS--YRKADVPS 366 A + P + ++ +WD R++ + S SL +G + +R D Sbjct: 325 IVREHAAQQAP---IVAKDRGLWDQRFRIHDPSGDAEAKGLSLGALGKDAKLFRSRD--- 378 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391 G+P I L ++PS G+ L+A Sbjct: 379 GLPSAI----LQTLPSWRHGEKLIA 399 >gi|72383087|ref|YP_292442.1| aromatic amino acid beta-eliminating lyase/threonine aldolase [Prochlorococcus marinus str. NATL2A] gi|123773751|sp|Q46ID9|TILS_PROMT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|72002937|gb|AAZ58739.1| Aromatic amino acid beta-eliminating lyase/threonine aldolase [Prochlorococcus marinus str. NATL2A] Length = 326 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%) Query: 22 ILVAVSGGSDSMGLLIA------LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 IL+A+SGG DSM LL LH + G ++ A S E +DE++ Sbjct: 20 ILLAISGGQDSMALLKLIIDLKRLHQWQVEVWHGNHQWHAKS------EETEDELKL--- 70 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHTF 128 C + +I S S K K + AR+ RY + AK +++ T I+T HT Sbjct: 71 WCLKNQI--SFHSNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+ ETV M R GL+ + + + N+ ++RP L R + N+ Sbjct: 129 TDRAETVIMNLAR--GTDLTGLTTLKEQRTIENNIDLTRPLLIFNRNETLEICKDFNLPI 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY 217 DPSN + R ++R+ + I L+++Y Sbjct: 187 WIDPSNENINLTRNKIRKEILPI-LNSIY 214 >gi|283955056|ref|ZP_06372559.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp. jejuni 414] gi|283793423|gb|EFC32189.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp. jejuni 414] Length = 321 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 22/199 (11%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ L+ + K Q+ AR+ RY + + ++ AH +DQ Sbjct: 60 AKELA--LKFHKKIFIKYAPKFQSNFEKKARDFRYDFFEKICFEQDYDHLILAHHLNDQF 117 Query: 133 ETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 E M+ R G GL+ GM C+ N + RP L +++I SFL +++I Sbjct: 118 EWFLMQLSR-----GSGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRR 206 + D SN ++++ R +R+ Sbjct: 170 YFHDESNENEKYFRNYIRK 188 >gi|239916682|ref|YP_002956240.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] gi|281414860|ref|ZP_06246602.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] gi|239837889|gb|ACS29686.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] Length = 394 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 10/193 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSRL- 80 LVA+SGG+DS+ L +A ++ R ++ A VDH L ++ D V + +R+ Sbjct: 69 LVALSGGADSLALALACAVLVGTREGRRLNPIGAAVVDHGL-QSGSDAVAAAAAGVARIL 127 Query: 81 -----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V+ P+ A REA A + A +++TAHT DDQ E V Sbjct: 128 GLTPVTVTRVEVARTGDGPEANARRARREALAAAARDAVPGAGAAVVLTAHTADDQAEQV 187 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R + L+G+ + RP L R D + ++W EDP N Sbjct: 188 LLGLARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLTRADTETICRWAGLTWFEDPHNR 245 Query: 196 DDRFERVRVRRFV 208 D R RVR V Sbjct: 246 DPALLRSRVRTRV 258 >gi|218439938|ref|YP_002378267.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424] gi|218172666|gb|ACK71399.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424] Length = 323 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 13/186 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79 ILVAVSGG DS+ LL L + + +++ HC + D +V + ++ Sbjct: 26 ILVAVSGGQDSLCLLKLLGDLQPKWEWD------LTIAHCDHQWPTDAGIKDHVQQIANQ 79 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I + + N K AAAR+ RY + E AK + I+T HT D+ ET Sbjct: 80 WKIPFYLKTADNLKETE---AAARKWRYQALIEIAKEQGFSFIVTGHTKSDRAETFLYNL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GLS + N+ + RP L R + F Q + ED N + ++ Sbjct: 137 IRGAGTD--GLSALTWERFLTENIKLVRPLLEISRAETYQFCQQFQLPIWEDVLNENFKY 194 Query: 200 ERVRVR 205 R R+R Sbjct: 195 TRNRIR 200 >gi|87123278|ref|ZP_01079129.1| possible MesJ-like protein [Synechococcus sp. RS9917] gi|86168998|gb|EAQ70254.1| possible MesJ-like protein [Synechococcus sp. RS9917] Length = 350 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV----C 77 +L+A+SGG DSM LL L + + + + DH + + R +D+ C Sbjct: 27 LLLALSGGQDSMALLALLRDL---QPLHRWQLHLWHGDHGWQAGSS---RIAADLQAWCC 80 Query: 78 SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHT 127 + L + V+ + A AR RY ++ A+ +NA ++TAHT Sbjct: 81 AEGLDLAVERVTVTRAALESPERSEAGARAWRYGALAAEAERLNALHPQSPCCAVITAHT 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D+ ET+ ++ R G+G + D L + RP + R D + + + Sbjct: 141 ASDRAETLLLQLARGTDLAGLGGQRSQRPLKSDGELPLVRPLVDFSRTDTATICQELALP 200 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 +DPSN D + R R+R V Sbjct: 201 VWQDPSNNDPSYGRNRIRAEV 221 >gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1] gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1] Length = 644 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIA 83 A+SGG DSM L AL+ K A VDH +R + +E +V+ ++ S+L + Sbjct: 14 AISGGVDSMAL-AALYKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVAQELRSKLGME 72 Query: 84 HSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +++ +W++ AR RY + + + T +M H DDQ ETV MR Sbjct: 73 STILPLTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMR 129 >gi|145220203|ref|YP_001130912.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris vibrioformis DSM 265] gi|145206367|gb|ABP37410.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeovibrioides DSM 265] Length = 329 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 34/217 (15%) Query: 6 IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHC 61 +E +R VR LV +LVAVSGG DSM LL +A+ VL R + V HC Sbjct: 9 LEQIR--VRRLVMDGEPLLVAVSGGPDSMALLSLFLAVQPVLHCR---------LGVAHC 57 Query: 62 ---LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISE 112 LR ++ DE +V + C RL + V + + + + +AR RY Sbjct: 58 NFGLRGPDSLADEA-FVREACRRLGLECFVARFDTELYCREHRLSIEESARTLRYDYFGR 116 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLR 171 K+ T + T H D ET+ R ++ + G+ +I+ RP L Sbjct: 117 LMKSEGFTKVATGHHVADNAETILFNLFRGTSQPSLRGIRSRHGSII--------RPMLL 168 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + DI +L ++ + + D SN D +R +R V Sbjct: 169 LHKADILGYLREKGMRYRIDRSNESDSHDRNFIRNRV 205 >gi|111225920|ref|YP_716714.1| hypoxanthine phosphoribosyltransferase [Frankia alni ACN14a] gi|111153452|emb|CAJ65210.1| hypoxanthine phosphoribosyltransferase (partial match) [Frankia alni ACN14a] Length = 630 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/207 (30%), Positives = 89/207 (42%), Gaps = 17/207 (8%) Query: 6 IESVRFFVRSLVY----PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +VRF VR+ V A +LVA SGG DSM L AL V R+ ++ + VDH Sbjct: 40 VAAVRFAVRNAVADLDPGALVLVACSGGPDSMSLAAALAFVAPRRA---LRAGLLVVDHG 96 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + + V++ L + V P++ A L + A L Sbjct: 97 WDPASAERAHGVAERGEALGL-RPVEVLTAHAPRSEGAARDARRDALLAAAARLGARAVL 155 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I HT DDQ ETV +R R + +G GM + + RP L RRE R+ Sbjct: 156 I--GHTLDDQAETVLLRLARGSGARSLG--GM-----RPRDGLLRRPLLGLRREQTRAAC 206 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 L + +DP+N D F R RVR V Sbjct: 207 LAERLPVWDDPTNEDPAFARARVRHRV 233 >gi|322707722|gb|EFY99300.1| PP-loop family protein [Metarhizium anisopliae ARSEF 23] Length = 653 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---- 54 F +E+V RF P + +A+SGG DSM + +++ R+ IK + Sbjct: 20 FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLI--RAHRGIKIADNPT 77 Query: 55 ----AISVDHCLRETAKDEVRYVSDVCSRL--RIAHSVVSWKN-----SKPQT--GLMAA 101 + VDH LR + E V+ +L + ++WK+ P + + + Sbjct: 78 ESAFGVIVDHRLRPESTLEAVKVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNMESV 137 Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 AR RY ++ + +NAT + AH DDQ ETV MR + +G Sbjct: 138 ARTMRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183 >gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus'] Length = 472 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 20/189 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+AVSGG DS+ +L + + + + I +DH R+ + E+ +V + L Sbjct: 23 ILLAVSGGPDSLTMLQLFFEF---KDYFAVDIALIHLDHQFRKESGQELDFVEEKAKDLN 79 Query: 82 IAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + K + P+ AAAR R+ E + L+ AH DDQ ETV Sbjct: 80 I--NFYTKKVNLPEIIKNENISAEAAARRERFNFFKEIYLKNDFDLLALAHHKDDQAETV 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDP 192 + R G GL G+ I +N+ + P L +++I + ++ ++ D Sbjct: 138 LLNLFR-----GSGLRGLS-GIEKKININGVQVIHPLLDFSKKEIIKYCQEKKLNPRYDS 191 Query: 193 SNTDDRFER 201 SN ++ + R Sbjct: 192 SNKENIYSR 200 >gi|332879339|ref|ZP_08447036.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682759|gb|EGJ55659.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 28/201 (13%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKD 68 LV P ILVA+SGG+DS +AL VL F HC +E+ +D Sbjct: 19 QLVEPDDKILVALSGGADS----VALLLVLLQAGF------HCEAAHCNFHLRGKESDRD 68 Query: 69 EVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 E ++V D+C RL + + AARE RY E I Sbjct: 69 E-KFVRDLCRSRSIRLHTKDFDTMAYAREKGISIEMAARELRYGYFEELRTDWRFDKIAV 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DD +ET+ + + +G GL G+ T + N ++ RP L RE+I +L Sbjct: 128 AHHRDDNVETLLL-----HLVRGTGLKGL--TGMRYRNGYVIRPMLDTSREEIERYLAGE 180 Query: 185 NISWCEDPSNTDDRFERVRVR 205 S+ D +N + R ++R Sbjct: 181 GQSYVTDSTNLETEAVRNKIR 201 >gi|291540846|emb|CBL13957.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Roseburia intestinalis XB6B4] Length = 485 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 23/201 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 ++V +SGG+DS+ LL+ L + + AI V+H +R E ++ + +V +C + Sbjct: 21 VIVGLSGGADSVALLLVLLELRQRIGY---TLLAIHVEHGIRGEESRKDAAFVEKLCRQK 77 Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFDDQ 131 RI V + G+ AAR RY + A+ + + I AH +D Sbjct: 78 NIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHANDN 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 ETV + R G G+ GMC +L D ++ I RP L R I +L + Sbjct: 138 AETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCGQE 191 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 + D +N D + R R+R + Sbjct: 192 YRTDGTNLDINYSRNRIRHHI 212 >gi|227486467|ref|ZP_03916783.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172] gi|227235648|gb|EEI85663.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172] Length = 454 Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V SGG DS L+ L + + G I ++H R+ A + V +L Sbjct: 23 VIVGASGGPDSQFLIHILDKLKN--KLG-IDIVLAHLNHLHRKEASKDEDLVRQTAEKLG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA----RYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + S + L ++ +A RY ++ +K + I AH DDQ ET M Sbjct: 80 LKFYSRSRSMDELAKELKISSEDAGRRLRYEFFNDLSKKFPISKIAVAHNKDDQAETALM 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G GL G+ + N I RP L ++++I ++L I++ D +N ++ Sbjct: 140 RIIR-----GTGLDGLRAMDYKNGN--IIRPILNIKKKEILAYLDSNEIAYAIDHTNFEN 192 Query: 198 RFERVRVR 205 + R ++R Sbjct: 193 DYTRNKIR 200 >gi|193216339|ref|YP_001997538.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC 35110] gi|193089816|gb|ACF15091.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC 35110] Length = 323 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 21/213 (9%) Query: 3 LSPIES---VRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 ++P E R V+SL+ +L+A SGG+DSM LL L V + F ++ +A Sbjct: 1 MTPFEKKFLERLRVKSLIKKNEKVLLAFSGGADSMALLSLLKKV---QPFLNLQLAAAHC 57 Query: 59 DHCLR--ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112 + LR E+ DE + C L I + + + + + AAR RY + Sbjct: 58 NFGLRGEESDADET-FCQMQCDALEIPIFTIHFDTKHFAQQHKMSIEEAARHLRYNFFYK 116 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + I TAH +D ET+ R +GL G+ + ++ + RP L Sbjct: 117 LAEIERCSKIATAHHANDNAETILFNLFR--GSSLLGLKGI--RVKHE---KLVRPLLGF 169 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 +R ++ +L + + + D +N D ++R +R Sbjct: 170 KRAELIEYLESQQLPYRLDLTNLSDAYDRNFIR 202 >gi|283956826|ref|ZP_06374300.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791687|gb|EFC30482.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336] Length = 321 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S GSDS L L KI F + +++ R+ + E ++ + Sbjct: 17 LLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H + K++ K Q+ AR+ RY + + ++ AH +DQ E M+ R Sbjct: 68 -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQFEWFLMQLSR 126 Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G GL+ GM C+ N + RP L +++I SFL +++I + D SN + Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFYDESNEN 178 Query: 197 DRFERVRVRR 206 +++ R +R+ Sbjct: 179 EKYFRNYIRK 188 >gi|282901699|ref|ZP_06309615.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505] gi|281193462|gb|EFA68443.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505] Length = 335 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%) Query: 14 RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR 71 R L P H+LVA+SGG DS+ L+ +L D K K + DH RE ++ Sbjct: 17 RHLFAPHEHLLVALSGGQDSLCLI----KLLVDLQVKWKWKLAIAHCDHRWREDSQANAD 72 Query: 72 YVSDVCS------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V ++ + L+IA V NS+ A AR RY + E A+ I+T Sbjct: 73 HVKNLATSWDLPFHLQIATDPV---NSE------ADARNWRYRVFREIAEDYGYKYIVTG 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFL 181 HT D+ ET+ R G G G+ ++ ++ +L + RP L RE F Sbjct: 124 HTSSDRAETLIYNLIR-----GTGADGL-QSLNWERSLGEKTMLVRPLLEITREQTGKFC 177 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206 ++ D +N + ++ R R+R+ Sbjct: 178 QDLDLPVWVDSTNQNLQYPRNRIRQ 202 >gi|331016383|gb|EGH96439.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 445 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 8/185 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS +L+ L + L+ R+ AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K + G + + + +++T DDQ ET+ R R Sbjct: 88 FESV---RVKVEPGASVEQAARQARYAAFTKRLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFV 208 +R V Sbjct: 202 LRSQV 206 >gi|239929771|ref|ZP_04686724.1| cell cycle protein [Streptomyces ghanaensis ATCC 14672] gi|291438097|ref|ZP_06577487.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672] gi|291340992|gb|EFE67948.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672] Length = 341 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 25/193 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG+DSM L AL G ++ ++VDH L + D+ +DV RLR Sbjct: 42 VLAACSGGADSMALASAL--AFEAPRLG-LRAGGVTVDHGL-QAGSDQ--RAADVVLRLR 95 Query: 82 ---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +A SV ++ P+ AAR+ARYA + A+ A ++ HT DDQ Sbjct: 96 ELGLDPVESVAVSV--GRDGGPEA----AARDARYAALDAAAERHGAAAVLLGHTRDDQA 149 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R + LSGM + RPFL+ R+ R + +++S +DP Sbjct: 150 ETVLLGLARGSGIR--SLSGMA--AVSGAGGRYRRPFLQLDRQTARKACMVQSLSVWDDP 205 Query: 193 SNTDDRFERVRVR 205 N D + R R+R Sbjct: 206 HNADPAYTRSRLR 218 >gi|306819511|ref|ZP_07453218.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304647803|gb|EFM45121.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 400 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 82/200 (41%), Gaps = 29/200 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L L S R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLALAAGLLRAAS-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133 A + V + P+TG +ARE R+ L++ A + + + T HT DDQ E Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165 Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174 TV +R R A M M D+ D+ +WISRP L RR Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRR 225 Query: 175 EDIRSFLLQRNISWCEDPSN 194 E Q + DP+N Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245 >gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892] gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892] Length = 806 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGGSDSM L +++ ++ +A VDH R + E + V+ L Sbjct: 76 IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYIVDHKYRPESSQEAQSVAKRVENLG 135 Query: 82 IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V++ W + G AR RY ++ + ++ H DD +ET M Sbjct: 136 VQSKVLTLQWPEGGILTKKGFETQARMLRYQILGKACVKDGVRALLLGHHQDDNVETALM 195 Query: 138 RSQRDYAEKGM 148 R + + + G+ Sbjct: 196 RVSKGHRKLGL 206 >gi|206560511|ref|YP_002231275.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315] gi|198036552|emb|CAR52449.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315] Length = 473 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V + +RL +A S + P+ G+ A ARE RYA + + + Sbjct: 69 ADAWVAHAEAEAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDAMGERHGVATL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ +++ RP LR R + Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + Q ++W +D SN D R+ R +R V L AL + F+D Sbjct: 182 RYAEQHALTWIDDESNGDTRYARNALRLDV----LPALAVHFPGFRD 224 >gi|210612743|ref|ZP_03289458.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787] gi|210151436|gb|EEA82444.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787] Length = 244 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F K + SAI+VD E D V ++C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPNKFELSAITVDLGYEEFDLDPVH---ELCQ 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + VV + ++ + + R +++ K + + AH DD + Sbjct: 79 ELGVPYKVVKTDIAHILFEERKESNPCSLCAKMRKGALNDAVKEMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + D+ F + N+ + Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPIMFVDEADVIGFKNKYNLPVVKSK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + VR ++ Sbjct: 195 CPVDGYTKRQYAKELVRQLN 214 >gi|255325834|ref|ZP_05366926.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum SK141] gi|255297046|gb|EET76371.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum SK141] Length = 295 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 33/197 (16%) Query: 22 ILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V +SGG+DS+ L+ AL H VL A+ VDH L++ ++ + ++ Sbjct: 10 VAVGLSGGADSLALMAALVAEGHEVL-----------ALCVDHGLQDGSRAQAERAAEQA 58 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------IMTAHTFDDQ 131 L V+S +TG +A A A + + + A + AHT DDQ Sbjct: 59 RTLGARAQVLS-----VETGAVAGAESMEAAARAARYRALAAACADEGLEVAVAHTADDQ 113 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + + R ++GM + + + RP L RR D + +S D Sbjct: 114 AETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGACAELGLSAWRD 166 Query: 192 PSNTDDRFERVRVRRFV 208 P N D F RV +RR V Sbjct: 167 PQNEDTNFRRVALRREV 183 >gi|167754850|ref|ZP_02426977.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402] gi|167704900|gb|EDS19479.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402] Length = 599 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 13/192 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL ++ + V++ LRE + + + V C R + Sbjct: 15 ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 67 Query: 83 AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V K AR RY E ++ AH +D +E + M+ QR Sbjct: 68 PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 127 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +G+ + + + + RP L R++ +R + N+ + +D +N F R Sbjct: 128 HNTKGYLGIQEISEV----FGVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 183 Query: 202 VRVRRF-VRDID 212 VR ++D D Sbjct: 184 DYVRNVTLKDYD 195 >gi|237735418|ref|ZP_04565899.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381163|gb|EEO31254.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 590 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 13/192 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL ++ + V++ LRE + + + V C R + Sbjct: 6 ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 58 Query: 83 AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V K AR RY E ++ AH +D +E + M+ QR Sbjct: 59 PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 118 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +G+ + + + + RP L R++ +R + N+ + +D +N F R Sbjct: 119 HNTKGYLGIQEISEV----FGVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 174 Query: 202 VRVRRF-VRDID 212 VR ++D D Sbjct: 175 DYVRNVTLKDYD 186 >gi|84489152|ref|YP_447384.1| ATPase [Methanosphaera stadtmanae DSM 3091] gi|84372471|gb|ABC56741.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091] Length = 319 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 18/131 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS+ LL L ++L +++ I A+++D + ++ +R + L Sbjct: 54 VLVGLSGGKDSVALLKIL-NILKEKNI--ITLEAVTIDEGISGYREEGIRIAKETAKALD 110 Query: 82 IAHSVVSWKNSKPQT-----GLMAAAREARYA----------LISEHAKTINATLIMTAH 126 I H +VS+K+ T A +A++A + ++ A+ +NAT + T H Sbjct: 111 IKHHIVSFKDKYNFTIDKIMEAEAKCNDAQHACTYCGVFRRQIFNQVARDVNATKLATGH 170 Query: 127 TFDDQLETVYM 137 DD+ +++ M Sbjct: 171 NLDDETQSIVM 181 >gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] gi|145214489|gb|ABP43893.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] Length = 322 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R+ +P VA+SGG DS+ L A+ + L +A+ VDH L+ + D Sbjct: 17 FARTHRFPPPWCVALSGGPDSLAL-TAVAATLH-------PTTALIVDHRLQPGSADVAA 68 Query: 72 YVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L +A V+ P AA AL + A+ + ++ HT DD Sbjct: 69 AAREQALALGCVAAQVLPVDVGSPGGPEAAARTARYRAL--DDAR--DGKPVLLGHTLDD 124 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV + R G G + YDL W RP L RR+ + ++ + Sbjct: 125 QAETVLLGLGR-----GSGPRSIAGMRPYDLP-W-GRPLLGVRRDTTHRACAELGLNPWQ 177 Query: 191 DPSNTDDRFERVRVRRFV 208 DP N D R+ RVR+R V Sbjct: 178 DPHNLDPRYTRVRLRTEV 195 >gi|242310195|ref|ZP_04809350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523492|gb|EEQ63358.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 327 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 30/198 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A L+A S G+DS L L +I F VD+ R+ +K EV SR Sbjct: 12 AKNLLAFSSGTDSTALYFLLKEY-------EISFDIAIVDYGTRKQSKLEV-------SR 57 Query: 80 LRIAHSVVSWKNSKPQT--------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 A S+ W N K T A AR+ RY + ++ AH +D Sbjct: 58 ---AKSLCFWDNKKCYTLTTKPITKNFEAEARKIRYDFFYTLTLQESYQNLILAHQLNDN 114 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISW 188 E M+ + + + M + ++ ++ + I RP + + I+S+L +RNI + Sbjct: 115 FEWFLMQFCKGSSVENMQIPK--KSLFWEESQRKCHILRPMISISKNQIKSYLQKRNIFY 172 Query: 189 CEDPSNTDDRFERVRVRR 206 ED SN D F R R+ Sbjct: 173 FEDSSNLDIVFTRNYFRK 190 >gi|308048686|ref|YP_003912252.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799] gi|307630876|gb|ADN75178.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799] Length = 446 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 113/282 (40%), Gaps = 30/282 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK---FSAISVDHCLRETAKDEVRY 72 L IL+A SGG DS L + L R G+ S I + H L A + Sbjct: 22 LATTGRILLAYSGGVDSELLAVCL-----ARWAGQCASPPVSLIHIHHGLSAYADQWAGH 76 Query: 73 VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L + VV+ + P+ + A+AR+ARY A+ L++TAH DDQ Sbjct: 77 CAARAKALDLPIEVVAVQLQRGPRISIEASARQARYDAF--RARLGPNDLLLTAHHLDDQ 134 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E++ + +R +G LS M + RP+L RR +I + Q + ED Sbjct: 135 AESLLLALKRGSGPRG--LSAMAAQQALGQGRMV-RPWLGLRRAEIEAAAAQLGVEHIED 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTV 244 SN D RF+ R F+R L L + F V+ A L L Sbjct: 192 DSNADTRFD----RNFLRHQVLPQLNQRWPGFSQAVVRSAALCAEQQQLCDELAEADLLT 247 Query: 245 HMRSIIAISQDILNIDS-----TLLFYLLRVSAAICGGQISL 281 H R A+S L S LL + LR A+ Q+ + Sbjct: 248 HQRDDGALSVTALAALSAPRRNNLLRFWLRQQGALMPSQLQM 289 >gi|206603982|gb|EDZ40462.1| tRNA(Ile)-lysidine synthetase [Leptospirillum sp. Group II '5-way CG'] Length = 504 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 21/193 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYV 73 P H A+SGG+DS+ L LH L R + + +H R E +DE+ + Sbjct: 39 PPHFHAAISGGADSLFLAFLLHLFLEKRH----PLTLLHFNHRTRGMENEEDEIFLRNFA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + LRI V+S P R+ RYA + + ++ H DDQ+E Sbjct: 95 QHIGRPLRIG--VLS--EPVPDHLSEDFLRKKRYAFFDTVLRENSNNILFLGHHQDDQVE 150 Query: 134 TVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ M R KG +G+ D ++ RP L R ++IR L +I + D Sbjct: 151 TILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLELRADEIRKILSDYDIPYRMDS 203 Query: 193 SNTDDRFERVRVR 205 SN + R RVR Sbjct: 204 SNLHRDYLRNRVR 216 >gi|295089879|emb|CBK75986.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Clostridium cf. saccharolyticum K10] Length = 464 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 30/202 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 ++V +SGG+DS+ LL S+LSD RS I+ A+ V H LR + A + + ++C + Sbjct: 21 VVVGLSGGADSVCLL----SLLSDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 76 Query: 80 LRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHA--------KTINATL---IM 123 L I ++ +N+ + A R RY + A + A L I Sbjct: 77 LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEDKEREQEGAALPVRIA 135 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DD ET+ + +G GL G+ + + + RP L R++I +L + Sbjct: 136 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 188 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 +S+ D +N + + R R+R Sbjct: 189 EGLSYVTDSTNLLNDYTRNRLR 210 >gi|296101358|ref|YP_003611504.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055817|gb|ADF60555.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A AR+ARYA + + A ++TA DDQ ET + +R G LS M + Sbjct: 22 GIEAHARKARYAAFTAALQPGEA--LVTAQHLDDQCETFLLALKRGSGPAG--LSAMPER 77 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 + + RP L R + ++ Q +SW ED SN DD ++ R F+R L L Sbjct: 78 SDFAGTQ-LLRPLLGESRASLEAWAQQYQLSWIEDESNQDDGYD----RNFLRLRVLPLL 132 Query: 217 YLKMKKFQD 225 + F D Sbjct: 133 TARWPHFAD 141 >gi|304383098|ref|ZP_07365573.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella marshii DSM 16973] gi|304335784|gb|EFM02039.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella marshii DSM 16973] Length = 444 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 21/200 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + + R L LVA+SGG+DS+ LL L+ + A+ + Sbjct: 1 MFSKTVSNYIAIHRLLQKEGKYLVALSGGADSVALLFLLNRL-------HYHLEAVHCNF 53 Query: 61 CLR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114 LR E +DE + +C L I V + S + AARE RY Sbjct: 54 KLRGEEADRDEA-FCQKLCRSLNIPFHTVHFDTSSYARLHGISIEMAARELRYNYFESLR 112 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K ++ I AH DD +ET+ + R G GL G+ + N +I RP L R Sbjct: 113 KDLSCDGICIAHHRDDIVETMLINLVR-----GTGLHGLQGIL--PRNGFILRPLLCVGR 165 Query: 175 EDIRSFLLQRNISWCEDPSN 194 +I +L ++ D +N Sbjct: 166 MEIEQYLRDIGQTYITDSTN 185 >gi|312212468|emb|CBX92551.1| hypothetical protein [Leptosphaeria maculans] Length = 758 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSRLRIA 83 A+SGG DSM L+ L+ R G A VDH R + +E +V++ + +L + Sbjct: 108 AISGGVDSMALMT-LYYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVAEQLRQKLDVP 166 Query: 84 HSVV--SWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +V+ W + AR RY + E ++ N + ++ AH DDQ ETV MR Sbjct: 167 STVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHADDQAETVLMR 226 Query: 139 SQRDYAEKGM-GLSG-----MCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 + G+ G+ G C+ I Y L P+ + R ++ S ++++ Sbjct: 227 LANNRLRSGLQGIQGSEWIPECEGI-YGL-YHSGSPYTKIRPDNPSSLVVEQG 277 >gi|225028631|ref|ZP_03717823.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353] gi|224954041|gb|EEG35250.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353] Length = 241 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 18/199 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL AL + R+F KF A++VD +E+R + C + Sbjct: 26 IAVGISGGKDSLTLLYALSYL---RNFYPHKFDIVAVTVDLGFDNLNLEEIR---EFCKK 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + + ++ + + ++ + + R +++ K + + AH DD LE Sbjct: 80 LGVEYQIIKTQIAEVVFQVRKESNPCSLCAKMRKGALNDAMKELGCNKVAYAHHKDDLLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ M + +G + T L L + RP L D++ F+ + N+ + P Sbjct: 140 SMMM----SFLFEGRIHTFAPVTYLDRSGLTVIRPLLFLYEGDVKGFVKEYNLPVVKSPC 195 Query: 194 NTDDRFERVRVRRFVRDID 212 D +R V+ + +I+ Sbjct: 196 PVDGSTKRENVKNLIGEIN 214 >gi|305432244|ref|ZP_07401407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter coli JV20] gi|304444592|gb|EFM37242.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter coli JV20] Length = 321 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL+ L+A S GSDS L H ++ KI F + +++ R+ + E + Sbjct: 7 ILSLLKKGRNLLAFSYGSDSSALF---HFLVQK----KIDFDLVMINYKTRKNSDLEEQK 59 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ H + K++ G AR+ RY + N + ++ AH +DQ Sbjct: 60 AKELALEF---HKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQNYSNLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 LE M+ R G GL+ GM C+ N + RP L +++I S+L + +I Sbjct: 117 LEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFMSKDEILSYLKENDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + +D SN ++++ R +R+ Sbjct: 169 FYFQDESNENEKYFRNYIRK 188 >gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97] Length = 774 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGGSDSM L +++ ++ A VDH R + E + V+ L Sbjct: 42 IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNLG 101 Query: 82 IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V++ W + G AR RY ++ + ++ H DD +ET M Sbjct: 102 VQSKVLTLQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETALM 161 Query: 138 RSQRDYAEKGM 148 R + + + G+ Sbjct: 162 RVSKGHRKLGL 172 >gi|86149480|ref|ZP_01067711.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596817|ref|ZP_01100054.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563056|ref|YP_002344835.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|61216748|sp|Q9PMK7|TILS_CAMJE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|85840262|gb|EAQ57520.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191658|gb|EAQ95630.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360762|emb|CAL35561.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930835|gb|EFV09827.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 305] Length = 321 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL+ L+A S GSDS L L KI F + +++ R+ + E Sbjct: 7 ILSLLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59 Query: 73 VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + H + K++ K Q+ AR+ RY + ++ AH +DQ Sbjct: 60 AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 E M+ R G GL+ GM C+ N + RP L +++I SFL +++I Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + D SN ++++ R +R+ Sbjct: 169 FYFHDESNENEKYFRNYIRK 188 >gi|293363922|ref|ZP_06610658.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2] gi|292552412|gb|EFF41186.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2] Length = 291 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 14/186 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+AVSGG DSM LL ++ + K A V++ R + + + V + C + Sbjct: 8 ILIAVSGGPDSMFLL--------NKFYKKNYVIAAFVNYNQRSDSNIDQKIVEEFCFKNN 59 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ K+ + AR RY E K N ++ A DD +E +++ Sbjct: 60 IVLEKLILNKSDYTKGNFQDWARITRYNFFKEMYKKHNCKKLLVAQHKDDFIENYFLQKT 119 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ + L+D +++ RP + R ++ I ++ N+ + D +N + ++ Sbjct: 120 RKKDRLFFGIDKKSE--LFD--MYVERPLINRYFKKQIIKQNMKNNLIFANDYTNHEPKY 175 Query: 200 ERVRVR 205 +R +R Sbjct: 176 KRNEIR 181 >gi|224436971|ref|ZP_03657952.1| hypothetical protein HcinC1_03315 [Helicobacter cinaedi CCUG 18818] gi|313143443|ref|ZP_07805636.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818] gi|313128474|gb|EFR46091.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818] Length = 414 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 24/217 (11%) Query: 2 FLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FLSP+ ++R + L + + L+ SGG DS L L KI F V + Sbjct: 4 FLSPL-ALRLKEKILPLADSKNLLGFSGGVDSTALFFLLVEY-------KIPFDIAIVHY 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTIN 118 R+ A DE+ + + ++L H +S PQ + AR R++ E ++ Sbjct: 56 HTRKEADDELSHAQHL-AKLYKKHCFIS---HAPQFSQNFESQARAFRFSFFDEIMQSYG 111 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRRE 175 ++ AH +D+ E + M+ R G GL + + ++ I RP ++ Sbjct: 112 YGALILAHQLNDRFEWLLMQLTR-----GAGLENLLGFESWRNAKISYHIVRPLESISKD 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-RFVRDI 211 +I ++ ++ + + ED SN D F+R R RF ++ Sbjct: 167 EIYTYCKEKGLKYFEDSSNADLGFKRNAFRVRFANEL 203 >gi|288925835|ref|ZP_06419766.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae D17] gi|288337490|gb|EFC75845.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae D17] Length = 430 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%) Query: 55 AISVDHC---LR--ETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR 106 ++ HC LR E+ +DE VS SR L AH + + AAR R Sbjct: 9 SVEAAHCNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARNLR 68 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 Y + I A I AH +D +ET+ + R G G+ G+ T + N ++ Sbjct: 69 YHYFDQLRLAIGAKGICVAHHLNDNVETLLLNLIR-----GTGIQGL--TGMASRNGFVL 121 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 RP L R E+IR +L N ++ D +N +D R ++R Sbjct: 122 RPLLDVRHEEIREYLHSINQAFVIDSTNLEDDVLRNKIR 160 >gi|325961732|ref|YP_004239638.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323467819|gb|ADX71504.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 402 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 10/191 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 YP ++VA SGG DS+ L ++ A+ VDH L+E + + + Sbjct: 61 YPGRLIVACSGGPDSLALAAVAAYFARRGHVDGHPVRVGAVVVDHQLQEGSAEVAAETAR 120 Query: 76 VCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 V L +A + + + G AAAREAR+ + A A ++ HT DDQ E Sbjct: 121 VLQELGLAPVEIRTVTVAGEGMGPEAAAREARHEALEAAAAGQGADAVLLGHTLDDQAEQ 180 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + L+GM + RPFL RR D + DP+N Sbjct: 181 VLLGLARGSGTR--SLAGM-----RPARGKLLRPFLELRRADTEEICAVEELDPWHDPTN 233 Query: 195 TDDRFERVRVR 205 D F R R R Sbjct: 234 ADPAFARSRTR 244 >gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818] Length = 774 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGGSDSM L +++ ++ A VDH R + E + V+ L Sbjct: 42 IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNLG 101 Query: 82 IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V++ W + G AR RY ++ + ++ H DD +ET M Sbjct: 102 VQSKVLALQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETALM 161 Query: 138 RSQRDYAEKGM 148 R + + + G+ Sbjct: 162 RVSKGHRKLGL 172 >gi|312173368|emb|CBX81622.1| cell cycle protein [Erwinia amylovora ATCC BAA-2158] Length = 433 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRP--QLQLRAVHIHHGLSPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A V + C R R+ VV + + G+ AAAR+ARY + + + ++TA Sbjct: 59 ADGWVAHCQQQCDRWRVPLVVVRVQVDALEGGIEAAARQARYQALRQ--QLAAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ + +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLLGDHRHL---RPLLAQSRQQLESWAQRYQ 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I W ED SN D R++ R F+R L + L +++ V + + + Sbjct: 174 IGWIEDDSNQDPRYD----RNFLR---LQVMPLLNQRWPHFASAVARSAQLCGEQERL-- 224 Query: 246 MRSIIAISQDILNIDSTLLFY--LLRVSAA---------ICGGQISLPGYRSMERVMLFL 294 + ++A S D L +S L + LL +S A I S+P +++R+ L + Sbjct: 225 LDELLAESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGSMPSRAALQRIWLEV 284 Query: 295 ---KSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350 ++ C+ +G + R R W LP + W +Q L D Sbjct: 285 ACSRADAEPCLRMGSREVRRFRDRLYW-------LPQRLPLGASQLAWPAPWQPLTLPDG 337 Query: 351 LIQI 354 L Q+ Sbjct: 338 LGQL 341 >gi|302900689|ref|XP_003048310.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI 77-13-4] gi|256729243|gb|EEU42597.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI 77-13-4] Length = 677 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 19/138 (13%) Query: 28 GGSDSMGLLIALHSVLSDRSFGKIKFS--------AISVDHCLRETAKDEVRYVSDVCSR 79 GG DSM L +L +F + K + A+ +DH LR+ + +E V+ + Sbjct: 46 GGVDSMALAYLTSRMLQ--TFRRAKIADNPAHGALAVVIDHRLRDESTEEAMQVAKELRK 103 Query: 80 LRIAHSV--VSWKNSK-----PQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + +V ++WK K P+ L AR RY + H AT + AH DD Sbjct: 104 LDLKTTVTALAWKEEKRNGLDPRKLPNLEGLARTYRYRALGNHCNYQGATSLFFAHHRDD 163 Query: 131 QLETVYMRSQRDYAEKGM 148 Q ETV MR + +G+ Sbjct: 164 QYETVLMRLLGGHGYRGL 181 >gi|12044936|ref|NP_072746.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37] gi|1351480|sp|P47330|TILS_MYCGE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3844671|gb|AAC71302.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37] gi|166078989|gb|ABY79607.1| tRNA(Ile)-lysidine synthetase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 290 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 28/191 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + VSGGSDSM +L + + K + V++ R T+ + + V C +L I Sbjct: 8 IAGVSGGSDSMLML---------KLYQKKIACVVHVNYNTRSTSLRDQKLVEQYCQKLNI 58 Query: 83 ---AHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 H+V + WK + AR+ R+ + AK ++ AH DD +E Sbjct: 59 PLVVHTVDPDLVWKKN-----FQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQAK 113 Query: 137 MRSQRDYAEKGM--GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M Q D ++ + G+ C+ LY L ++ RP ++ +++I + Q +I + D +N Sbjct: 114 M--QLDAKKRAVYYGIKTRCE--LYGLKIY--RPLMKYWKDEIIALCRQDHIPYEIDETN 167 Query: 195 TDDRFERVRVR 205 ++R VR Sbjct: 168 KLPIYKRNEVR 178 >gi|183602055|ref|ZP_02963424.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp. lactis HN019] gi|241190541|ref|YP_002967935.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195947|ref|YP_002969502.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218940|gb|EDT89582.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp. lactis HN019] gi|240248933|gb|ACS45873.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250501|gb|ACS47440.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793528|gb|ADG33063.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis V9] Length = 376 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS+ L V + ++G I+ AI VDH L++ + + + C L Sbjct: 39 VFVACSGGRDSLALAACAQVVCA--AWG-IRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 95 Query: 82 IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + G+ AAAREARYA + A+ +AT ++ AHT DDQ E++ + Sbjct: 96 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 155 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R A +GM T L+D ++ + RP L R + + +DP+N D Sbjct: 156 R--AAGTDAFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGD 208 >gi|108796857|ref|YP_636406.1| hypothetical chloroplast RF62 [Staurastrum punctulatum] gi|122211798|sp|Q32RX0|TILS_STAPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61393625|gb|AAX45766.1| hypothetical chloroplast RF62 [Staurastrum punctulatum] Length = 493 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 17/173 (9%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L+ P IL+AVSGG DS+ LL L + S+ K I DH +K + +V Sbjct: 55 TLLQPKQRILIAVSGGQDSICLLRILFDLQRKWSW---KLGIIHCDHRWNSRSKIQAEHV 111 Query: 74 SDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + L+I H ++ ++ + + + AR RY +I A + N T I+T H D++ Sbjct: 112 ACLAINLQINYHEGIAIESVQKE----SIARLWRYNVIQSVAISNNYTAIITGHNASDRI 167 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR-SFLLQR 184 ET+ R G GL G+ +I + NL S F R I+ SFL+++ Sbjct: 168 ETLLYNLMR-----GSGLHGL-QSIKWKRNLCFSH-FTRSVLSKIKFSFLVKK 213 >gi|227876236|ref|ZP_03994352.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243] gi|227843197|gb|EEJ53390.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243] Length = 400 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L L + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133 A + V + P+TG +ARE R+ L++ A + + + T HT DDQ E Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165 Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174 TV +R R A M M D+ D+ +WISRP L RR Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRR 225 Query: 175 EDIRSFLLQRNISWCEDPSN 194 E Q + DP+N Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245 >gi|219682964|ref|YP_002469347.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis AD011] gi|254789033|sp|B8DWC0|TILS_BIFA0 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|219620614|gb|ACL28771.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis AD011] gi|289178276|gb|ADC85522.1| TilS [Bifidobacterium animalis subsp. lactis BB-12] Length = 382 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS+ L V + ++G I+ AI VDH L++ + + + C L Sbjct: 45 VFVACSGGRDSLALAACAQVVCA--AWG-IRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 101 Query: 82 IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + G+ AAAREARYA + A+ +AT ++ AHT DDQ E++ + Sbjct: 102 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R A +GM T L+D ++ + RP L R + + +DP+N D Sbjct: 162 R--AAGTDAFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGD 214 >gi|198276045|ref|ZP_03208576.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135] gi|198271674|gb|EDY95944.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135] Length = 426 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +LVA+SGG+DS+ LL L A HC LR E+ +DE R+V + Sbjct: 22 VLVALSGGADSVALLRVL----------LRLGYACEAAHCNFHLRGEESVRDE-RFVRAL 70 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 RL + V+ + + + AARE RY ++ + A ++ AH DD + Sbjct: 71 AERLGVPLHVIHFDTNAYAASHNVSVEMAARELRYDWFTKLRQECGAKVVAVAHHRDDSV 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + R G G++G+ + +N + RP L R +I +L + D Sbjct: 131 ETFLLNLVR-----GTGINGL--QGIRPVNGDVVRPLLCVSRAEILDYLSSLGQDYVTDS 183 Query: 193 SNTDDRFERVRVR 205 +N D F R ++R Sbjct: 184 TNLQDEFVRNKLR 196 >gi|229495229|ref|ZP_04388964.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406] gi|229317672|gb|EEN83570.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406] Length = 473 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 27/198 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74 A +LVA+SGG+D SV + + I++ HC LR E+ +DE ++ Sbjct: 30 ASVLVALSGGAD---------SVALLLALQLANYRPIAI-HCNFHLRGEESLRDE-QFCR 78 Query: 75 DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 D+ +L I V + + + + AARE RY + + A I AH D Sbjct: 79 DLTDQLGIELEVHHFDTRAYAATHRLSVEMAARELRYQVFEQEASKRGIEAIAVAHHLQD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ R G GL+G+ + + I RP L ++I FL +C Sbjct: 139 NVETLLGNLSR-----GTGLTGLRGILPKRGS--IIRPLLDVHPKEIHDFLHLLGQPFCN 191 Query: 191 DPSNTDDRFERVRVRRFV 208 D +N D +R +R + Sbjct: 192 DSTNQDTTIKRNAIRHSI 209 >gi|297627180|ref|YP_003688943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922945|emb|CBL57527.1| TRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 329 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 12/191 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYVSDVC 77 + VA SGG DS+ +A + R + A+ VDH L RE A V V + Sbjct: 31 VRVACSGGPDSL--ALAAAVAVCARRDPALLAEALVVDHQLQPGSREVAHAAVDAVRGLG 88 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R V P+ A + A L++ HT DDQ ETV + Sbjct: 89 LPARTVAVQVPHSGEGPEA--AARRARYEALAAPDAAGGRRPDLVLLGHTLDDQAETVLL 146 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + L+GM W RP L RR D ++ ++ DP N DD Sbjct: 147 GLVRGSGIRS--LAGMPAHFGSAPQFW--RPLLGVRRADTERACVEWGLAPWHDPQNRDD 202 Query: 198 RFERVRVRRFV 208 RF R R+R V Sbjct: 203 RFTRSRLRHRV 213 >gi|269976858|ref|ZP_06183832.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1] gi|269934689|gb|EEZ91249.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1] Length = 400 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L L + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133 A + V + P+TG +ARE R+ L++ A + + + T HT DDQ E Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165 Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174 TV +R R A M M D+ D+ +WISRP L RR Sbjct: 166 TVLLRLGRGASLLALSAMRPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRR 225 Query: 175 EDIRSFLLQRNISWCEDPSN 194 E Q + DP+N Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245 >gi|89898294|ref|YP_515404.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56] gi|89331666|dbj|BAE81259.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56] Length = 247 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 10/161 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ ++ +Y++++C +++ Sbjct: 37 IVVALSGGKDSLTLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGSEVSQKYLANICDKIQ 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--S 139 + + ++ S P+ + + R L+ + AK + A+ + H DD ++T M Sbjct: 96 VPFTSIASPYS-PEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLH 154 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + + +D+ I RP + IR F Sbjct: 155 KAEFA----GMLPVLGMVHFDIT--ILRPLILTPESWIRKF 189 >gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1] Length = 742 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 19/156 (12%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--------AISVDHC 61 RF P I++AVSGG DSM L + + R F K + A+ VDH Sbjct: 95 RFPTARFARPQRIILAVSGGVDSMALAFLVSKFI--RMFRGSKVADNPVHGAMAVVVDHK 152 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSK-----PQT--GLMAAAREARYALISE 112 LR+ + E V +L I +V ++WK+ + P+ + AR RY + Sbjct: 153 LRDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLARTYRYRALGR 212 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 + + A + AH DDQ ETV MR + +G+ Sbjct: 213 ICEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGL 248 >gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] gi|118171008|gb|ABK71904.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] Length = 322 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 32/189 (16%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76 VA+SGG DS+ AL +V + + +A+ VDH L+ ETA+ + V V Sbjct: 28 VALSGGPDSL----ALTAV----AAAERPTTALIVDHGLQTGSRAVAETARAQALSVGCV 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + VV ++ P+ AAAR+ARY + + ++ HT DDQ ETV Sbjct: 80 GAEI---IPVVVGRSGGPE----AAARKARYTALQ---AARDGAPVLLGHTLDDQAETVL 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G + +D W RP L RR + + + DP N + Sbjct: 130 LGLAR-----GSGPRSIAGMRPHDPP-W-HRPLLGIRRTVTHAACEELGLKPWHDPHNFE 182 Query: 197 DRFERVRVR 205 RF R R+R Sbjct: 183 PRFTRTRLR 191 >gi|304391052|ref|ZP_07373004.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325935|gb|EFL93181.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 415 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 29/215 (13%) Query: 8 SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P L+ A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPH-PWDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHA------KTIN 118 + E + L + + V+ ++ G AR R+ L++ A + + Sbjct: 91 SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159 +I+T HT DDQ ETV +R R + + + +T+ + Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++L ++RP L RRE ++ Q + DPSN Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSN 245 >gi|307701216|ref|ZP_07638238.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16] gi|307613610|gb|EFN92857.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16] Length = 400 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L L + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133 A + V + P+TG +ARE R+ L++ A + + + T HT DDQ E Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165 Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174 TV +R R A M M D+ D+ +WISRP L RR Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRR 225 Query: 175 EDIRSFLLQRNISWCEDPSN 194 E Q + DP+N Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245 >gi|292489208|ref|YP_003532095.1| cell cycle protein [Erwinia amylovora CFBP1430] gi|292898558|ref|YP_003537927.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946] gi|291198406|emb|CBJ45513.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946] gi|291554642|emb|CBA22328.1| cell cycle protein [Erwinia amylovora CFBP1430] Length = 433 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 38/364 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRP--QLQLRAVHIHHGLSPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A V + C R R+ VV + + G+ AAAR+ARY + + + ++TA Sbjct: 59 ADGWVAHCQQQCDRWRVPLVVVRVQVDAREGGIEAAARQARYQALRQ--QLAAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ + +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLLGDHRHL---RPLLAQSRQQLESWAQRYQ 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I W ED SN D R++ R F+R L + L +++ V + + + Sbjct: 174 IGWIEDDSNLDPRYD----RNFLR---LQVMPLLNQRWPHFASAVARSAQLCGEQERL-- 224 Query: 246 MRSIIAISQDILNIDSTLLFY--LLRVSAA---------ICGGQISLPGYRSMERVMLFL 294 + ++A S D L +S L + LL +S A I S+P +++R+ L + Sbjct: 225 LDELLAESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGSMPSRAALQRIWLEV 284 Query: 295 ---KSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350 ++ C+ +G + R R W LP + W +Q L D Sbjct: 285 ACSRADAEPCLRMGSREVRRFRDRLYW-------LPQRLPLGASQLAWPAPWQPLTLPDG 337 Query: 351 LIQI 354 L Q+ Sbjct: 338 LGQL 341 >gi|298345496|ref|YP_003718183.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063] gi|298235557|gb|ADI66689.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063] Length = 415 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 29/215 (13%) Query: 8 SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P L+ A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPH-PWDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHA------KTIN 118 + E + L + + V+ ++ G AR R+ L++ A + + Sbjct: 91 SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159 +I+T HT DDQ ETV +R R + + + +T+ + Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++L ++RP L RRE ++ Q + DPSN Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSN 245 >gi|238810161|dbj|BAH69951.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 307 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 15/164 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ FFV+ V +IL +SGG DSM LL + ++ K + +++ R + Sbjct: 2 TLMFFVK--VNNMYIL-GISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSH 51 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAH 126 +V V + C + I + + ++ +TG AR+ R + ++ NA+ I+ AH Sbjct: 52 KDVEIVENYCKQNFIDYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAH 111 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 DD LE+ +M+ A++ G+ T +Y L I RPF+ Sbjct: 112 HKDDFLESFFMQK---VAKRKPSFWGIKKTNIYKGCL-IERPFI 151 >gi|57168991|ref|ZP_00368120.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|57019657|gb|EAL56346.1| conserved hypothetical protein [Campylobacter coli RM2228] Length = 321 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL+ L+A S GSDS L H ++ KI F + +++ R+ + E + Sbjct: 7 ILSLLKKGRNLLAFSYGSDSSALF---HFLVQK----KIDFDLVMINYKTRKNSDLEEQK 59 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ H + K++ G AR+ RY + N + ++ AH +DQ Sbjct: 60 SKELALEF---HKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQNYSNLILAHHLNDQ 116 Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 LE M+ R G GL+ GM C+ N + RP L +++I S+L + +I Sbjct: 117 LEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFMSKDEILSYLKENDI 168 Query: 187 SWCEDPSNTDDRFERVRVRR 206 + +D SN ++++ R +R+ Sbjct: 169 FYFQDESNENEKYFRNYIRK 188 >gi|21221833|ref|NP_627612.1| hypothetical protein SCO3406 [Streptomyces coelicolor A3(2)] gi|256786987|ref|ZP_05525418.1| hypothetical protein SlivT_21069 [Streptomyces lividans TK24] gi|289770880|ref|ZP_06530258.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24] gi|61217439|sp|Q9X8I6|TILS_STRCO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4808345|emb|CAB42759.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289701079|gb|EFD68508.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24] Length = 352 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G ++ ++VDH L+ + ++R +V RLR Sbjct: 53 VLVACSGGADSMALASAL--AFEAPRLG-VRAGGVTVDHGLQ--SGSDLR-AEEVVLRLR 106 Query: 82 -------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A +V + P+ AAR+ARYA + A A ++ HT DDQ ET Sbjct: 107 ELGLDPVEATAVTVGRAGGPEA----AARDARYAALDAAAARHGAAAVLLGHTRDDQAET 162 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM + RPFL+ R+ R + +++ +DP N Sbjct: 163 VLLGLARGSGIR--SLSGMA--AVSGAGGRYRRPFLQVDRQTARKACMVQSLPVWDDPHN 218 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 219 ADPAYTRSRLR 229 >gi|171741155|ref|ZP_02916962.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC 27678] gi|171276769|gb|EDT44430.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC 27678] Length = 366 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 21/183 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + S G ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV-- 135 + ++ N + GL AAAREARYA I E + +A +++AHT +DQ ETV Sbjct: 102 LDPVRVRAIEVHGNGQ---GLEAAAREARYAAIVE--ECSDAAAVLSAHTKNDQAETVLI 156 Query: 136 -YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +RS A GM S D + + RP+L RE+ + W +DP+N Sbjct: 157 GLLRSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTN 210 Query: 195 TDD 197 D Sbjct: 211 GPD 213 >gi|152988564|ref|YP_001346885.1| hypothetical protein PSPA7_1501 [Pseudomonas aeruginosa PA7] gi|150963722|gb|ABR85747.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 439 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 12/187 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS ++ RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDST--VLLHLLARLARSEALPALSALHVHHGLQTAADAWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISE--HAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + Q + + +A A A +++TA DDQ ET+ R R Sbjct: 83 LRV-----ERVQVAVTGSIEQAARAARYRAFQASLGEGQVLLTAQHLDDQAETLLFRLLR 137 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 138 GAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFAR 194 Query: 202 VRVRRFV 208 +R+ V Sbjct: 195 NYLRQEV 201 >gi|261749297|ref|YP_003256982.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497389|gb|ACX83839.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 440 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 26/200 (13%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDE 69 SLV I VAVSGG DSM LL L V + + V HC +E+ +DE Sbjct: 19 SLVEKKKICVAVSGGLDSMVLLNLLLLVPN---------LTLGVAHCNFTLRDKESNEDE 69 Query: 70 VRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V + C++ I V + + + + + AAR+ RY + + + Sbjct: 70 -NFVKNFCAKKHILCHVKRFNTFDFSKRNKFSIQMAARKLRYDWFENLLEKHSYDHMALG 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H D +ET ++ R G GL G+ + N RP +E+I + + Sbjct: 129 HHLSDSVETFFINIMR-----GTGLKGLLG--IPRENRKFIRPLSSFTKEEILHYAKMKK 181 Query: 186 ISWCEDPSNTDDRFERVRVR 205 ++W D SN ++++ R ++R Sbjct: 182 VNWRLDHSNQENKYLRNKIR 201 >gi|121613548|ref|YP_001001102.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|148925625|ref|ZP_01809313.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp. jejuni CG8486] gi|157415678|ref|YP_001482934.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni 81116] gi|167005997|ref|ZP_02271755.1| hypothetical protein Cjejjejuni_07600 [Campylobacter jejuni subsp. jejuni 81-176] gi|87249823|gb|EAQ72782.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|145845635|gb|EDK22726.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp. jejuni CG8486] gi|157386642|gb|ABV52957.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni 81116] Length = 321 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S GSDS L L KI F + +++ R+ + E ++ + Sbjct: 17 LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H + K++ K Q+ AR+ RY + ++ AH +DQ E M+ R Sbjct: 68 -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126 Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G GL+ GM C+ N + RP L +++I SFL +++I + D SN + Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178 Query: 197 DRFERVRVRR 206 +++ R +R+ Sbjct: 179 EKYFRNYIRK 188 >gi|237752872|ref|ZP_04583352.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430] gi|229375139|gb|EEO25230.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430] Length = 334 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 18/187 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L R G I F VD+ +R+ ++ EV +C + Sbjct: 16 LLAFSAGVDSSALYFLL------RECG-ISFDIAIVDYGIRKQSRLEVDRAKTLCFWDKR 68 Query: 83 AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V K +P AR+ RYA E + N ++ AH +D E M+ Sbjct: 69 QCFV---KVEEPILKDFEHTARKVRYAFFEEIIQAQNYHNLILAHQLNDAFEWFLMQFC- 124 Query: 142 DYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG L M C ++ + RP L+ R++I +L +R I + ED SN D +F Sbjct: 125 ----KGSSLLKMQGCYKRQGIVDYRVVRPLLKTSRQEILEYLNKRKIFYFEDFSNLDSKF 180 Query: 200 ERVRVRR 206 R R+ Sbjct: 181 LRNAFRK 187 >gi|161504644|ref|YP_001571756.1| hypothetical protein SARI_02765 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865991|gb|ABX22614.1| hypothetical protein SARI_02765 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 365 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 27/250 (10%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A AREARY ++ + ++ TA DDQ ET + +R G LS M + Sbjct: 22 GIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGER 77 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 + + RP L R+ + + ++ + W ED SN DD ++ R F+R L AL Sbjct: 78 SPF-AGTQLLRPLLEETRKTLELWAVRHGLCWIEDESNQDDAYD----RNFLR---LRAL 129 Query: 217 YLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 L +++ V + A+ L+ + LT + I ++ L + + +R Sbjct: 130 PLLQRRWPHFSAAVARSAALCAEQERLLDELLTSDLTDCI-TARGTLRLSPLMSMSDVRR 188 Query: 271 SAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR-RANFLWITRAV 322 +A + +P ++ER+ + + C+ G I R ++ WI Sbjct: 189 AAILRRWLATRNAPMPSRDALERIWREVALARDDASPCLRFGDHEIRRYQSQLWWIKSIA 248 Query: 323 RNLPTLILYP 332 T I +P Sbjct: 249 GQSETTIAWP 258 >gi|307748319|gb|ADN91589.1| tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni M1] gi|315930961|gb|EFV09936.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 327] Length = 321 Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S GSDS L L KI F + +++ R+ + E ++ + Sbjct: 17 LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H + K++ K Q+ AR+ RY + ++ AH +DQ E M+ R Sbjct: 68 -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126 Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G GL+ GM C+ N + RP L +++I SFL +++I + D SN + Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178 Query: 197 DRFERVRVRR 206 +++ R +R+ Sbjct: 179 EKYFRNYIRK 188 >gi|148244290|ref|YP_001218984.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA] gi|146326117|dbj|BAF61260.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA] Length = 390 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 24/190 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++ +SGG DS+ LL L++ + K I +H L + ++ C L Sbjct: 16 IVLGLSGGIDSIVLLHYLNTHYPN------KIRVIHCNHHLSQFCNKWDKFCKTTCLNLN 69 Query: 82 IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + + S+ N+ + + AR+ RY +S K ++ TAH +DQ ET+ ++ Sbjct: 70 IVYLSINLSFDNT---SNIEENARKKRYHSLSNLLKE--NEVLCTAHHKNDQAETLLLQL 124 Query: 140 QRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G+ + I Y RPFL + + + ++W ED SN Sbjct: 125 FRGSGSAGLAAMPKEKPLGKGIHY-------RPFLTINKSQVSDYANNHKLNWIEDDSNK 177 Query: 196 DDRFERVRVR 205 + F R +R Sbjct: 178 NTYFRRNFLR 187 >gi|306823453|ref|ZP_07456828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Bifidobacterium dentium ATCC 27679] gi|309802756|ref|ZP_07696860.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022] gi|304553160|gb|EFM41072.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Bifidobacterium dentium ATCC 27679] gi|308220820|gb|EFO77128.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022] Length = 366 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 15/180 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + S G ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---YM 137 + V + + + GL AAAREARYA I E + +A ++ AHT +DQ ETV + Sbjct: 102 LDPVRVRAIEVHGNEQGLEAAAREARYAAIVE--ECSDAAAVLLAHTKNDQAETVLIGLL 159 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 RS A GM S D + + RP+L RE+ + W +DP+N D Sbjct: 160 RSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTNGPD 213 >gi|308190379|ref|YP_003923310.1| cell cycle protein [Mycoplasma fermentans JER] gi|307625121|gb|ADN69426.1| cell cycle protein [Mycoplasma fermentans JER] Length = 304 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 FFV+ V +IL +SGG DSM LL + ++ K + +++ R + +V Sbjct: 2 FFVK--VNNMYIL-GISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSHKDV 51 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFD 129 V + C + I + + ++ +TG AR+ R + ++ NA+ I+ AH D Sbjct: 52 EIVENYCKQNFIDYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKD 111 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 D LE+ +M+ A++ G+ T +Y L I RPF+ Sbjct: 112 DFLESFFMQK---VAKRKPSFWGIKKTNIYKGCL-IERPFI 148 >gi|262369825|ref|ZP_06063152.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046] gi|262314864|gb|EEY95904.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046] Length = 448 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 19/188 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H L+ SGG DSM LL + + R AI +DH L++ + +V + C L Sbjct: 32 HFLIGCSGGMDSMLLLHLMSHLFPKR------IRAIYIDHQLQDVSPQWGSFVQEQCYVL 85 Query: 81 RIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + + TG + + AR ARYA +H + +++ AH DQ ETV +R Sbjct: 86 DVPCVI---QAVDVDTGNVESQARSARYAAFQKH--LLANEILVLAHHQQDQAETVLLR- 139 Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G G+ G+ D+ I RP L R+ I + + + +D +N D Sbjct: 140 ----LLSGAGIHGLAAMQSIDIREQFTIWRPLLALSRQQIELWAAEMQLRNIQDQTNFDT 195 Query: 198 RFERVRVR 205 ++R R Sbjct: 196 SYDRAWCR 203 >gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|291006247|ref|ZP_06564220.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|133909630|emb|CAL99742.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 22/192 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV----- 76 + VA SGG+DS+ L A V R I + VDH L+E + D ++ Sbjct: 32 VAVACSGGADSLALAAATTHVARRRD---IAVHGLVVDHGLQEGSADVASRAAEQLEELG 88 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C +R+ V + P+ A A A A ++ HT DDQ ETV Sbjct: 89 CDVVRVL-PVEIGREGGPEAAARRARYAALDAARPAGAP------VLLGHTRDDQAETVL 141 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G + DL W+ RPFL R+ + + +DP N+D Sbjct: 142 LGLGR-----GSGARSIAGMRPVDLP-WL-RPFLDVTRDTTLAACEALGLRPWQDPHNSD 194 Query: 197 DRFERVRVRRFV 208 +F RVR+R V Sbjct: 195 AKFTRVRLRAEV 206 >gi|221195339|ref|ZP_03568395.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae ATCC 49626] gi|221185242|gb|EEE17633.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae ATCC 49626] Length = 499 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 27/207 (13%) Query: 22 ILVAVSGGSDSMGLLIALHS----VLSDRSFGKI---KFSAISVDHCLR--ETAKDE--V 70 +++ VSGG+DS LL+ + V R KI + + ++H LR + KDE V Sbjct: 1 MVLMVSGGADSTALLVMAATDVLDVQDGRGRAKIAQDRLCVLHINHQLRGADAEKDEQFV 60 Query: 71 RYVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTI--------NATL 121 R +S + S+ ++ + + A R RY + ++ A + + Sbjct: 61 RTLSAKYGITCVTRSLDIASIAAADHLNVEDAGRRVRYEIANQLANELCEQAGVPRASAR 120 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TAH +D+ ET M R G G SG+ +I N I RP L ++ ++L Sbjct: 121 IVTAHNANDRAETFLMNVTR-----GTGTSGLA-SIPRRRNR-IVRPLLGFTHLELCNYL 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 ++R ISW ED +N D + R +R + Sbjct: 174 VERGISWREDLTNADTYYLRSYIRHEI 200 >gi|124026824|ref|YP_001015939.1| ATPase [Prochlorococcus marinus str. NATL1A] gi|254789040|sp|A2C5B5|TILS_PROM1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123961892|gb|ABM76675.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. NATL1A] Length = 326 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 15/203 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG DSM L L ++ + K + +H ++ + C + + Sbjct: 20 ILLAISGGQDSMAL---LKLIIDLKRLHKWQVEIWHGNHQWHSKSEKTEEELKLWCLKNQ 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHTFDDQLET 134 I S S K K + AR+ RY + AK +++ T I+T HT D+ ET Sbjct: 77 I--SFHSNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTATDRAET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M R GL+ + + + N+ ++RP L R + N+ DPSN Sbjct: 135 VIMNLAR--GTDLTGLTTLKEQRTIESNIDLTRPLLIFNRNETLEICKDFNLPIWIDPSN 192 Query: 195 TDDRFERVRVRRFVRDIDLHALY 217 + R ++R+ + I L+++Y Sbjct: 193 ENINLTRNKIRKEILPI-LNSIY 214 >gi|118602173|ref|YP_903388.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567112|gb|ABL01917.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 390 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 22/191 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++ +SGG DS+ LL L++ +++ I +H L + + ++ +C L Sbjct: 16 IVLGLSGGIDSVVLLYYLNTHYPNKT------RVIHYNHHLSQYCNEWNKFCEKLCLSLN 69 Query: 82 IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + S+ + N+ + + R+ RY +S K ++ TAH +DQ ET+ ++ Sbjct: 70 ITYLSIDLYFNN--TSNIEENTRKKRYHSLSNSLKK--NEVLCTAHHQNDQAETLLLQLF 125 Query: 141 RDYAEKGMGLSGMCDTILYD-LNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G+ G+ L + I RPFL + I + ++W ED SN + Sbjct: 126 R-----GSGIKGLAAMPKEKPLGMGIHYRPFLTISKFQIIDYAKNNKLNWIEDDSNKNTN 180 Query: 199 FERVRVRRFVR 209 F +R F+R Sbjct: 181 F----MRNFLR 187 >gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181] gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181] Length = 638 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+++ +AVSGG+DSM L + + +A VDH RE + E R V+ S Sbjct: 45 PSNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARNVATWLS 104 Query: 79 RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + + W + AR R+ + + + ++ H DD +ET Sbjct: 105 DMGLQAQILELEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLMGHHQDDNVETTL 164 Query: 137 MRSQRDYAEKGMGLSGM 153 R +G GL+G+ Sbjct: 165 WR--LCTGARGAGLAGI 179 >gi|86151954|ref|ZP_01070167.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315124890|ref|YP_004066894.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841062|gb|EAQ58311.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315018612|gb|ADT66705.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 321 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S GSDS L L KI F + +++ R+ + E ++ + Sbjct: 17 LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H + K++ K Q+ AR+ RY + ++ AH +DQ E M+ R Sbjct: 68 -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126 Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G GL+ GM C+ N + RP L +++I SFL +++I + D SN + Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178 Query: 197 DRFERVRVRR 206 +++ R +R+ Sbjct: 179 EKYFRNYIRK 188 >gi|46446494|ref|YP_007859.1| hypothetical protein pc0860 [Candidatus Protochlamydia amoebophila UWE25] gi|46400135|emb|CAF23584.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL L ++ S R F ++ AI V A Y+ +C + Sbjct: 37 IAVALSGGKDSLTLLYLLKAI-SGRGFPNLEIHAIHVSGEFSCGAGVNEDYLRAICQEIG 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + +RE R L+ E AK++ T I H DD +TV M Sbjct: 96 VQLTTRISTQKLEKLECYSCSRERRR-LLFEAAKSLGITTIAFGHHRDDHTQTVLM---- 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPSNTDDRF 199 + K + + + + I RP + ++IR+F Q+ + C P + Sbjct: 151 NLLHKAEFAGNLPKIHMQEYGVTIIRPLIYIAEKNIRTFAQQQGFARIMCRCPVGQNSMR 210 Query: 200 ERV 202 ++V Sbjct: 211 KQV 213 >gi|148378008|ref|YP_001256884.1| hypothetical protein MAG_7460 [Mycoplasma agalactiae PG2] gi|148292054|emb|CAL59446.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 286 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 17/218 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DSM LL + S SD +V++ +R+ + +V V C Sbjct: 2 ILLGISGGPDSMYLLDLISSQRSD-------IVVATVNYNVRQDSAYDVEIVRKFCEDKG 54 Query: 82 IAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + G ARE R+A + + N + AH DD LE+ +M+ + Sbjct: 55 IIFECLEIDQKACFKGNFEKWAREQRFAFFKKIYEKYNCEALYLAHHKDDFLESYFMQKE 114 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+ T Y + + RP + + + +I L + I + D +N + Sbjct: 115 SKRQPDFFGIK----TENYIYGMKVVRPLVGKVFKNEILEALHNKKIKYANDYTNDLPIY 170 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R R+R +++ + K K F D++ K NN +A L Sbjct: 171 TRNRIRIWLKSLSNSQ---KSKIFDDVQ-KENNELAEL 204 >gi|126454111|ref|YP_001066846.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a] gi|242315465|ref|ZP_04814481.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b] gi|126227753|gb|ABN91293.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a] gi|242138704|gb|EES25106.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b] Length = 492 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|76811958|ref|YP_334064.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b] gi|167916722|ref|ZP_02503813.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 112] gi|217420494|ref|ZP_03451999.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576] gi|226199017|ref|ZP_03794580.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan 9] gi|254191453|ref|ZP_04897957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254197535|ref|ZP_04903957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13] gi|254258079|ref|ZP_04949133.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a] gi|76581411|gb|ABA50886.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b] gi|157939125|gb|EDO94795.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur 52237] gi|169654276|gb|EDS86969.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13] gi|217395906|gb|EEC35923.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576] gi|225929117|gb|EEH25141.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan 9] gi|254216768|gb|EET06152.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a] Length = 492 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|53723754|ref|YP_103279.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344] gi|67642950|ref|ZP_00441700.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4] gi|121601180|ref|YP_993468.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1] gi|124383414|ref|YP_001029100.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229] gi|126448974|ref|YP_001080976.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247] gi|167001800|ref|ZP_02267592.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20] gi|254177526|ref|ZP_04884181.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399] gi|254200231|ref|ZP_04906597.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH] gi|254209311|ref|ZP_04915657.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU] gi|254358020|ref|ZP_04974293.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280] gi|61216458|sp|Q62J40|TILS_BURMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52427177|gb|AAU47770.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344] gi|121229990|gb|ABM52508.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1] gi|124291434|gb|ABN00703.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229] gi|126241844|gb|ABO04937.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247] gi|147749827|gb|EDK56901.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH] gi|147750084|gb|EDK57155.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU] gi|148027147|gb|EDK85168.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280] gi|160698565|gb|EDP88535.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399] gi|238524177|gb|EEP87611.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4] gi|243062485|gb|EES44671.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20] Length = 489 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|294664722|ref|ZP_06730052.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605500|gb|EFF48821.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 418 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 29/335 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS + LH + + + A+ V H L A + C L+ Sbjct: 1 MLLAYSGGMDSS---VLLHLLAAASRYRHAGLRALHVHHGLHADADAWAAHCQRTCDALQ 57 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V + ++ +GL A + I + AH DDQ ET +R+ R Sbjct: 58 VPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLRALR 116 Query: 142 DYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 A GL+ M LW RP L R D+ ++ + W +DPSN D + Sbjct: 117 --ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAHGLRWIDDPSNADPHHD 172 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSIIAISQ-- 254 R F+R + L + + D + +A A+L+ + + + + S+I S Sbjct: 173 ----RNFLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMAL-LPSVITASGAL 227 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGRVVID 310 D+ + + + R+ A + P G ++E+ + + + C + +V + Sbjct: 228 DLQALRAQPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVR 287 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 R L++ RA P+ + WDG Q Sbjct: 288 RWRQCLFLHRAAAAWPS-----DWHAQWDGAAPLQ 317 >gi|155370502|ref|YP_001426036.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella virus FR483] gi|155123822|gb|ABT15689.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella virus FR483] Length = 513 Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 27/238 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++++SGGSDSM +H + +FG + V++ R++A E +V+D + Sbjct: 208 PTKLIMSISGGSDSMVAFHIIHGL--KEAFG-YDIDVVMVNYTNRDSAYAEEAFVADWVN 264 Query: 79 RLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 V N++ +T R+ RYA KT+ ++ H DD Sbjct: 265 SFGYPLHVRRIDEIKRKQCANNQLRTVYEKYTRDVRYATY----KTLGPHPVVMGHNKDD 320 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LE + +K LSGM DT++ + RP L + DI ++ + I + Sbjct: 321 CLENILQNIGS--CQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPFL- 376 Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYL----KMKK-FQDLRVKVNNAVAMLIPKY 241 P++T +R ++R V + D + L++ ++KK D+ V +V M + + Sbjct: 377 -PNSTPPTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 433 >gi|288927672|ref|ZP_06421519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 317 str. F0108] gi|288330506|gb|EFC69090.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 317 str. F0108] Length = 453 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80 LVA+SGG+DS+ L L + K A+ + LR E+ +DE + ++C Sbjct: 25 LVALSGGADSVALFRMLLRL-------DYKVDAVHCNFKLRGEESFRDEA-FCENLCREH 76 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +A V + ++ + + AARE RY + ++ I AH DD +ET+ Sbjct: 77 GVAFHTVHFDTAEYAALHKLSIEMAARELRYNHFEKLRNDLDMDGICVAHHQDDNVETML 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G GLSG+ T + N + RP L + +L + D +N Sbjct: 137 INLIR-----GTGLSGL--TGMKPRNGHVLRPLLAVSHAHLLDYLQALGQPYVTDSTNLT 189 Query: 197 DRFERVRVR 205 F R ++R Sbjct: 190 TDFTRNKIR 198 >gi|167739278|ref|ZP_02412052.1| putative cell cycle protein [Burkholderia pseudomallei 14] Length = 489 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALVDVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|134277776|ref|ZP_01764491.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305] gi|254297086|ref|ZP_04964539.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e] gi|134251426|gb|EBA51505.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305] gi|157807057|gb|EDO84227.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e] Length = 489 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|269796486|ref|YP_003315941.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542] gi|269098671|gb|ACZ23107.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542] Length = 344 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 17/181 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LVA SGG+DS+ L A + G ++ A+ VDH ++ + + + C Sbjct: 29 ALVLVACSGGADSLAL--AATTAFEAPRLG-LRAGAVVVDHQVQTGSAEVAAEAAGRCRD 85 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFDDQLET 134 L + VV + TG + EA A A +++ HT DDQ ET Sbjct: 86 LGLGPVVV--RTVDVPTGPGSGGPEAAARHARYAALEAAADAEGAEVVLLGHTADDQAET 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + L+GM D + W RP L RR + + + + W DP+N Sbjct: 144 VLLGLARGSGAR--SLAGMRDAV----GRW-RRPLLGLRRTETEAVCAAQGLGWWVDPTN 196 Query: 195 T 195 Sbjct: 197 A 197 >gi|237812903|ref|YP_002897354.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346] gi|237506736|gb|ACQ99054.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346] Length = 489 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|224418853|ref|ZP_03656859.1| hypothetical protein HcanM9_06215 [Helicobacter canadensis MIT 98-5491] gi|253828158|ref|ZP_04871043.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142371|ref|ZP_07804564.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511564|gb|EES90223.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131402|gb|EFR49019.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 329 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 14/194 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A L+A SGG DS L L +S+G I F VD+ +R+ + E+ +C Sbjct: 15 AKNLLAFSGGLDSTALYFLL------KSYG-IAFDIAIVDYGIRQQSHLEISRAKTLC-- 65 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + K K A AR RY + + ++ AH +D LE M+ Sbjct: 66 FWDNKQCYTLKAPKINKNFEANARAIRYDFFTSLVSQNSYQNLILAHQLNDNLEWFLMQF 125 Query: 140 QRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + + M + ++ + N +I RP + R ++ +L I + ED SN D Sbjct: 126 CKGTSIENMQIPP--KSLFWKQNQKTCYILRPMIFLPRITLQMYLQTHKIFYFEDSSNAD 183 Query: 197 DRFERVRVRRFVRD 210 ++R R++ + Sbjct: 184 TAYKRNYFRKYFAN 197 >gi|296128486|ref|YP_003635736.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109] gi|296020301|gb|ADG73537.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109] Length = 386 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +LVA SGG+DS+ L L D G + A+ VDH L++ + D + + C R Sbjct: 26 ATVLVACSGGADSLALAAGLAWEAQD---GGWRAGAVVVDHGLQDGSHDVAQEAAAACRR 82 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + V + G AAAR ARYA + A ++AT ++ HT DDQ ETV + Sbjct: 83 LGLDPVRVVRVDVGTAGGPEAAARSARYAALDAAADELDATAVLLGHTLDDQAETVLLAL 142 Query: 140 QRDYAEKGMGLSGM 153 R E+ L+GM Sbjct: 143 ARGSGER--ALAGM 154 >gi|53719849|ref|YP_108835.1| putative cell cycle protein [Burkholderia pseudomallei K96243] gi|254184420|ref|ZP_04891010.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655] gi|61216466|sp|Q63ST1|TILS_BURPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52210263|emb|CAH36242.1| putative cell cycle protein [Burkholderia pseudomallei K96243] gi|184214951|gb|EDU11994.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655] Length = 489 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|300870722|ref|YP_003785593.1| putative cell cycle protein MesJ [Brachyspira pilosicoli 95/1000] gi|300688421|gb|ADK31092.1| putative Cell cycle protein, MesJ [Brachyspira pilosicoli 95/1000] Length = 455 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 20/200 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81 VA SGG DS LL + + ++ I AI V++ LR E+ DE+ + + Sbjct: 39 VAYSGGIDSQVLLNIAYKLKDKLNYNLI---AIHVNYNLRGEESIGDEM-FARETAKNYN 94 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139 I V K S AR+ RY E + K I L++ AH DD ET+ R Sbjct: 95 IDIYVKHIEKGSYNNKNTQLEARKDRYLFFKELYNKKIYDYLLI-AHNKDDLTETIIYRM 153 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG G + L ++ RP L R+DI + + ++S ED SN +++ Sbjct: 154 I-----KGSGTN--IYKALSKKRKYVLRPILNFYRKDIEEYAKENSLSHREDSSNKTNKY 206 Query: 200 ERVRVRRFV----RDIDLHA 215 R ++R + +I+L A Sbjct: 207 SRNKLRNVIIPMLEEINLQA 226 >gi|15618181|ref|NP_224466.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|15835796|ref|NP_300320.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|16752779|ref|NP_445047.1| hypothetical protein CP0500 [Chlamydophila pneumoniae AR39] gi|33241603|ref|NP_876544.1| YdaO [Chlamydophila pneumoniae TW-183] gi|4376533|gb|AAD18410.1| PP-Loop Superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189418|gb|AAF38329.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978634|dbj|BAA98471.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236111|gb|AAP98201.1| YdaO [Chlamydophila pneumoniae TW-183] Length = 244 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA+SGG DS+ LL+ L ++ S R F + A+++ A+ Y++ +C +L Sbjct: 37 IVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLC 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + P+T +AR L+ + AK I A+ I H DD ++T + Sbjct: 96 IPFRTIPSPYA-PETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLH 154 Query: 142 DYAEKGM 148 GM Sbjct: 155 KAEFAGM 161 >gi|119962110|ref|YP_945961.1| tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1] gi|119948969|gb|ABM07880.1| putative tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1] Length = 356 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 10/194 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRETAKDEVRY 72 S YP+ +LVA SGG DS+ L + + + VDH L+ + + Sbjct: 7 SAGYPSRVLVACSGGPDSLALAAVAAYFARRGHVDGHPVSVAGVVVDHQLQAGSAEVAAR 66 Query: 73 VSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + V L ++ V + + + G AAAR+AR+A + A + I+ HT DDQ Sbjct: 67 TASVLRELGLSPVEVRTVEVASTGFGPEAAARDARHAALESAADHLGCDAILLGHTLDDQ 126 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E V + R + L+GM + RPFL RRE+ + D Sbjct: 127 AEQVLLGLARGSGTR--SLAGM-----RPARGRLLRPFLGLRREETLEICEVEELDPWHD 179 Query: 192 PSNTDDRFERVRVR 205 PSN D F R R R Sbjct: 180 PSNADPAFARSRTR 193 >gi|315503391|ref|YP_004082278.1| tRNA(ile)-lysidine synthetase [Micromonospora sp. L5] gi|315410010|gb|ADU08127.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. L5] Length = 316 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 9/203 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L A V G+ + ++VDH L+ + Sbjct: 4 AVRRVLTGLPGGGPVLVACSGGADSLALAAATAFVAP--RLGR-QAGLVTVDHGLQAGSA 60 Query: 68 DEVRYVSD--VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + V+D L + + +P AA ALI+ A+ +A ++ Sbjct: 61 ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAA-ARRYDAAGVLLG 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + GLSGM + D + + RP L R D R+ Sbjct: 120 HTRDDQAETVLLALARGAGPR--GLSGMPERRDVD-GVPLLRPLLDVPRADTRAACEALG 176 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + DP N D + R RVR V Sbjct: 177 LDPWADPHNADPAYARARVRSDV 199 >gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704] gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704] Length = 775 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ + +AVSGG DSM L + + +K A+ VDH R+ + DE V+ Sbjct: 30 FPSRVALAVSGGPDSMALAHLCRKLTVEGYIPDLKVIALIVDHKSRKGSADEALRVAGWI 89 Query: 78 SRLRIAHSVVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +++ W K+ + AR+ RY + + N ++ H DD Sbjct: 90 QEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHHRDDN 149 Query: 132 LETVYMRSQRDYAEKGMGLSG 152 +ET +R + + + GL+G Sbjct: 150 IETGLLRLSQGH--RRFGLAG 168 >gi|303232429|ref|ZP_07319121.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4] gi|302481513|gb|EFL44581.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4] Length = 482 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 34/210 (16%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETAKDEVR-YVSDVC 77 VSGG+DS+ L + S D G+ + + + V+H LR +A DE YV + Sbjct: 2 VSGGADSVALTVLACSRPLDLRDGRGPVRINPARLAILHVNHGLRGSAADEDESYVRLLA 61 Query: 78 SRLRIAHSV-----------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL----- 121 I V + + + + A R+ RY ++ A+ + Sbjct: 62 GHFHIPCYVEHVNVAQLAKKQAAAHRGASSNIEAVGRQVRYDCATKLARQLCTQTHTRYA 121 Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I+TAHT +D+ ET + A +G GL+G+ +I + I RP L E++ Sbjct: 122 DARIVTAHTANDRAETFLIN-----ATQGSGLAGL-SSIPRKRQI-IVRPLLDFTHEELC 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L +++I W ED +N D + R +R V Sbjct: 175 DILSKQDIPWHEDETNKDTWYMRAYMRHAV 204 >gi|257463149|ref|ZP_05627550.1| cell cycle protein MesJ [Fusobacterium sp. D12] Length = 409 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 24/181 (13%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA-----HSV 86 M +L+ L LS + + + H +R E A+++ + D + + V Sbjct: 1 MEMLLKLQEQLS------FQMLLLHLHHMIRQEAAEEDYLFCLDYAKKKNLEIIARKMDV 54 Query: 87 VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 S+ + Q+ L A R RY + K I TAH DD LET + R R + + Sbjct: 55 PSYAKKEGQS-LEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETFFFRLLRGSSME 113 Query: 147 GM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 G+ G+S D I RP + +I S+L + I++C+D +N + + R R+ Sbjct: 114 GLAGISRKQADKI---------RPLRDFEKAEILSYLERHQIAYCKDKTNEETEYSRNRI 164 Query: 205 R 205 R Sbjct: 165 R 165 >gi|254252011|ref|ZP_04945329.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158] gi|124894620|gb|EAY68500.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158] Length = 468 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 19/207 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALADMPSDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCIALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A + +RL +A S + P+ G+ A+ARE+RYA + + A + Sbjct: 69 ANAWAAHAQATATRLGVAFE--SMRVDVPRDSGLGIEASARESRYAALDAMCEAHGAAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ ++ RP LR R + Sbjct: 127 WIAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPGGASVERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205 + QR+++W +D SN D R+ R +R Sbjct: 182 RYAAQRDLAWIDDESNGDTRYARNALR 208 >gi|325109969|ref|YP_004271037.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305] gi|324970237|gb|ADY61015.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305] Length = 332 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 10/189 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78 ++VAVSGG+DS+ LL + + +++ +H R E +D + ++ +C+ Sbjct: 23 QLMVAVSGGADSIALLRGCVFLAEE---CELRLVVAHFNHRTRPGENERD-LEWLQALCT 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +L + V ++S+ T R+AR + A++ + AH DDQ ETV Sbjct: 79 QLAVPF-VAGERDSQASTSSSENELRQARRRFFIDTARSREIGTVCFAHHADDQAETVLH 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R GM +GM + + RP L + +R FL + + ED SN Sbjct: 138 RLCRGTGLAGM--TGMQEVSSLAEGIVAFRPLLGLPGQALRDFLSEIDQPHREDASNASS 195 Query: 198 RFERVRVRR 206 ++ R R+R+ Sbjct: 196 QYTRNRIRQ 204 >gi|331091115|ref|ZP_08339957.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405337|gb|EGG84873.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium 2_1_46FAA] Length = 244 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F K + SAI+VD + ++ V ++C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYSDF---DLTPVENLCR 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + ++ + + R ++E K + + AH DD + Sbjct: 79 ELDVPYKIVKTDIGRILFEERKESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + D+ F + N+ ++ Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEADVIGFKNKYNLPVVKNK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 + D +R + V+ ++ Sbjct: 195 CSVDGHTKRQYAKELVKQLN 214 >gi|329768244|ref|ZP_08259745.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341] gi|328837443|gb|EGF87072.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341] Length = 438 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 10/188 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS ++ H +++ + ++H LRE + +E +V + Sbjct: 13 IALGLSGGVDS---IVLFHLLVTKYKESYKELVVFHINHGLREQSYEEAEFVENFVKNYN 69 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ T AR+ RY E + ++TAH +DQ+E + M Sbjct: 70 VKFYKKELNMNELARDSHTSEEMLARKLRYEAFEEMSSLEGGVKLITAHHKNDQVENILM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + + M + M + L + RP L + ++ + + N+ + D +N D Sbjct: 130 RL---LSGRSMDYNLMIEEQTTIGELEVYRPLLSVLKAELEQYADENNLKYYVDSTNFDT 186 Query: 198 RFERVRVR 205 + R +R Sbjct: 187 DYTRNNIR 194 >gi|319777782|ref|YP_004137433.1| tRNA(ile)-lysidine synthase [Mycoplasma fermentans M64] gi|318038857|gb|ADV35056.1| tRNA(Ile)-lysidine synthase [Mycoplasma fermentans M64] Length = 296 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 12/149 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DSM LL + ++ K + +++ R + +V V + C + I Sbjct: 3 ILGISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 55 Query: 83 AHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ +TG AR+ R + ++ NA+ I+ AH DD LE+ +M+ Sbjct: 56 DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQK-- 113 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A++ G+ T +Y L I RPF+ Sbjct: 114 -VAKRKPSFWGIKKTNIYKGCL-IERPFI 140 >gi|296126844|ref|YP_003634096.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563] gi|296018660|gb|ADG71897.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563] Length = 450 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 16/189 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81 VA SGG DS +L + + D SF I I V++ LR ++ DE+ + ++ + Sbjct: 23 VAYSGGIDSQVMLNIAYRLKDDLSFNLI---IIHVNYNLRGEDSTNDEL-FAREMAKKYN 78 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139 I V +NS + AR RYA E + K I L++ AH DD ET+ R Sbjct: 79 IDIYVKEIPQNSYIGKNIQLEARNDRYAFFEELYNKKIYDYLLI-AHNKDDLAETIIYRM 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 KG G + L +I RP L R+DI + +++ ED SN + + Sbjct: 138 I-----KGAGTNVYKS--LRGKKGYILRPILNFYRKDIEIYAQVNSLTHREDYSNKKNYY 190 Query: 200 ERVRVRRFV 208 R ++R + Sbjct: 191 ARNKIRNLI 199 >gi|157953860|ref|YP_001498751.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella virus AR158] gi|156068508|gb|ABU44215.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella virus AR158] Length = 504 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 21/198 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V P I +++SGG DSM L L + R F K + V++ R A DE +V+D Sbjct: 195 VKPGEITMSLSGGVDSMTLFHILDGL---RGFYDYKMNVAMVNYTNRVCAYDEEYFVTDW 251 Query: 77 CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTIN-ATLIMTAHT 127 + L SV + N KP +T R+ RY KTI+ + H Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTY----KTISREAFVAMGHN 307 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD LE + K L+GM D ++ + RP L ++DI + NI Sbjct: 308 KDDCLENILQNICS--GHKYDNLNGM-DIVVVQDGIKFFRPLLDVSKDDIIEYARGHNIP 364 Query: 188 WCEDPSNTDDRFERVRVR 205 + P++T F+R VR Sbjct: 365 YL--PNSTPAHFKRGMVR 380 >gi|269303137|gb|ACZ33237.1| PP-loop family protein [Chlamydophila pneumoniae LPCoLN] Length = 244 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA+SGG DS+ LL+ L ++ S R F + A+++ A+ Y++ +C +L Sbjct: 37 IVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLC 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + P+T +AR L+ + AK I A+ I H DD ++T + Sbjct: 96 IPFRTIPSPYA-PETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALL 150 >gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rhodococcus equi 103S] gi|311887387|emb|CBH46699.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus equi 103S] Length = 329 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 94/207 (45%), Gaps = 21/207 (10%) Query: 6 IESVRFFVRSLV---YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I VR VR+ + +PA ++VA+SGG+DS+ L +A +V S A+ VDH Sbjct: 16 ILEVRHAVRAWLARHHPAGGVVVALSGGADSLALTVA--AVAEAPSV-----RAVVVDHR 68 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L++ + + + A + V + GL AAAR ARYA + Sbjct: 69 LQDGSAEVAAVAAARALEFGCAGADVVPVDVTGPGGLEAAARAARYAALD---AARAGRP 125 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM YD W RP L RR+ R Sbjct: 126 VLLGHTLDDQAETVLLGLAR--GSGGRSIRGMAG---YDAP-W-GRPLLGVRRDVTRRAC 178 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + EDP N D F RVR+R V Sbjct: 179 AELGLVAHEDPHNADPAFTRVRLRTEV 205 >gi|167816493|ref|ZP_02448173.1| putative cell cycle protein [Burkholderia pseudomallei 91] Length = 417 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|318077182|ref|ZP_07984514.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actF] Length = 259 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ A I+ HT DDQ ETV + R + LSGM + + RPFLR Sbjct: 49 AEKHGAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRID 104 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R+ R + +++ +DP NTD + R R+R Sbjct: 105 RQTARKACMVQSLPVWDDPHNTDPAYTRSRLR 136 >gi|282895983|ref|ZP_06304014.1| PP-loop protein [Raphidiopsis brookii D9] gi|281199093|gb|EFA73963.1| PP-loop protein [Raphidiopsis brookii D9] Length = 335 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 31/205 (15%) Query: 14 RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR 71 R L P H+LVA+SGG DS+ L+ +L D K K + DH RE ++ Sbjct: 17 RHLFAPHEHLLVALSGGQDSLCLI----KLLVDLQVKWKWKLAIAHCDHRWREDSQANAD 72 Query: 72 YVSDVCS------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V ++ + L+IA V NS+ AR RY + E A+ I+T Sbjct: 73 HVKNLATSWDLPFHLQIAIDPV---NSE------GDARNWRYRVFREIAEDYGYKYIVTG 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFL 181 HT D+ ET+ R G G G+ ++ + +L + RP L RE F Sbjct: 124 HTSSDRAETLIYNLIR-----GTGADGL-QSLTWQRSLGEKTMLVRPLLEITREQTGKFC 177 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206 ++ D +N + ++ R R+R+ Sbjct: 178 QDLDLPVWVDSTNQNLQYPRNRIRQ 202 >gi|269469148|gb|EEZ80693.1| tRNA(Ile)-lysidine synthetase [uncultured SUP05 cluster bacterium] Length = 391 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +I++A+SGG DS+ LL L++ S GK++ A+ +H L + + + ++C L Sbjct: 15 NIVLALSGGIDSVVLLHYLNTHFS----GKLR--AVHCNHHLSKHCSEWDEFCKNLCQSL 68 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + K + L AR+ RY +S ++ TAH +DQ ET+ ++ Sbjct: 69 SIDYLNIDIF-IKNDSNLEENARKKRYHSLS--CNLEENEVLCTAHHQNDQAETLLLQLF 125 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G++G+ ++ + L RP L + I + + + W ED SN + Sbjct: 126 R-----GSGVAGLA-SMPKEKTLGKGIHYRPMLSLNKTQIIDYAKKYKLRWIEDDSNKNT 179 Query: 198 RFERVRVR 205 F R +R Sbjct: 180 DFRRNFLR 187 >gi|94985096|ref|YP_604460.1| tRNA(Ile)-lysidine synthetase-like protein [Deinococcus geothermalis DSM 11300] gi|94555377|gb|ABF45291.1| tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase [Deinococcus geothermalis DSM 11300] Length = 539 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 74/183 (40%), Gaps = 20/183 (10%) Query: 30 SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89 +DS+ LL AL VL G +A +DH LR + + +V + L + Sbjct: 30 ADSVALLRAL--VL----VGAQPVTA-HLDHALRPDSAQDAAWVQTLAEELGVPFEAARV 82 Query: 90 KNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 + L AAR RY + A+ A I+TAHT DQ ETV + R A Sbjct: 83 DVAAVAARRGWNLEDAARRVRYEFLGRVARQHRAEAILTAHTRRDQAETVLLGLLRGEA- 141 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 T + + + RP+L R D+ ++L W ED +N D R +R Sbjct: 142 --------VLTGIPPIRGRVRRPWLDVSRADVEAWLRSLGQDWREDSTNADPAQTRAWLR 193 Query: 206 RFV 208 V Sbjct: 194 TVV 196 >gi|91772989|ref|YP_565681.1| hypothetical protein Mbur_0991 [Methanococcoides burtonii DSM 6242] gi|91712004|gb|ABE51931.1| PP-loop family protein [Methanococcoides burtonii DSM 6242] Length = 302 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL LH + R I+ A+++D + ++ + + S L Sbjct: 52 IAVALSGGKDSVVLLYLLHKIFGVRR--DIEIVALTIDEGIAGYREETLAKARKLTSELG 109 Query: 82 IAHSVVSWKNSKPQT--GLMAAARE---------ARYALISEHAKTINATLIMTAHTFDD 130 I H V S+K+ +T L A R+ R +L+++ A I A + T H DD Sbjct: 110 IRHIVRSFKDEYDKTLDELTAQERKLGACSYCGVLRKSLMNKIANEIGANKLATGHNLDD 169 Query: 131 QLETVYM 137 + +T+ M Sbjct: 170 EAQTIMM 176 >gi|21228898|ref|NP_634820.1| hypothetical protein MM_2796 [Methanosarcina mazei Go1] gi|20907428|gb|AAM32492.1| conserved protein [Methanosarcina mazei Go1] Length = 302 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 13/136 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L +H +L DR I+ AISVD + + + L Sbjct: 52 IAVALSGGKDSSVALYIMHKILGDRP--DIQIVAISVDEGIHGYRPQSLELAKQLTEALG 109 Query: 82 IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130 + H + S+K+ T L RE R ++++ A I AT ++T H DD Sbjct: 110 VRHIIKSFKDEHGATMDELAVMDREKGTCSYCGVLRKSILNRVAIEIGATKLVTGHNLDD 169 Query: 131 QLETVYMRSQRDYAEK 146 + +T+ + R E+ Sbjct: 170 EAQTILLNHFRGDMER 185 >gi|167830049|ref|ZP_02461520.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 9] Length = 424 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NTD R+ R +R Sbjct: 197 NTDTRYARNALR 208 >gi|220917561|ref|YP_002492865.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955415|gb|ACL65799.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 450 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 12/193 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L PA +LVA+SGG+DS LL AL ++ + +++ A+ +DH LR ++ E Sbjct: 20 RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRAGSEPEAAS 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C+RL + + + + + A AR RYA + E A A+ I T HT DQ Sbjct: 78 ARAACARLGV--PLEERRLAVGAGNVQAEARRVRYAALREAAARAGASRIATGHTLGDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R R +G+ + + RP + RE+ ++L + W +DP Sbjct: 136 ETVLLRLLRGAGARGL-------AAIPPRRGPVIRPLIDRTREEGNAYLRAMGLGWADDP 188 Query: 193 SNTDDRFERVRVR 205 +N + R R+R Sbjct: 189 TNAVPGYARNRLR 201 >gi|322390535|ref|ZP_08064053.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 903] gi|321142809|gb|EFX38269.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 903] Length = 424 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 24/188 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSDV-C 77 +LVA+SGG DSM L L+ ++ KI V+H R + + E+R ++D Sbjct: 21 VLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHGQRPESDLEESELRTLADRRE 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R+ +AH + +K AR RY + + + T ++T H +DQ ET +M Sbjct: 78 TRIHVAHYSGDFTEAK--------ARTFRYDFFKQIMEKEDCTALVTGHHANDQAETTFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R K LSG+ + I RP L ++++ I ED SN Sbjct: 130 RLIR--GTKLRHLSGIPVRQPFGKGELI-RPLLTFTKDELMK------IPHFEDSSNDSQ 180 Query: 198 RFERVRVR 205 + R RVR Sbjct: 181 DYFRNRVR 188 >gi|187479043|ref|YP_787067.1| tRNAIle-lysidine synthetase ( cell cycle protein) [Bordetella avium 197N] gi|115423629|emb|CAJ50169.1| tRNAIle-lysidine synthetase (putative cell cycle protein) [Bordetella avium 197N] Length = 341 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 20/205 (9%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR + L A + +A+S G+DS L +A + R A+ V H L+ A + Sbjct: 18 VRATLARLPSQAPVALALSAGADSAMLAVAARLLAPQRP-----LLALHVHHGLQAQADE 72 Query: 69 EVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + L RIAH V S G+ AAAR ARYA ++ A+ A ++ Sbjct: 73 WAQRAQALGGLLELPVRIAHVKVPADGS----GIEAAARTARYAALAAMAREAGAGHVLL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSF 180 AH DDQ ETV +R R +GM + M + D L++ RP+L R I ++F Sbjct: 129 AHHRDDQAETVLLRLLRGAGVEGM--AAMREASPRDGLLYL-RPWLDLGRAAIVQAAQAF 185 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 +DPSN D R+ R VR Sbjct: 186 AALTGWQAVQDPSNVDPRYTRAAVR 210 >gi|125622900|ref|YP_001031383.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363] gi|124491708|emb|CAL96627.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363] gi|300069638|gb|ADJ59038.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris NZ9000] Length = 422 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + ++F + + IL+A+SGG DSM L L+ + R+ I+ ++H Sbjct: 8 FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINA 119 LR + E + + + S L I V + TG ARE RY + N Sbjct: 61 LRPESDFEEQALRKMASDLEIPIFVDRF------TGEFTEQKAREFRYHFFEKIMIAENY 114 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++TAH D +ETV MR + L G+ D + I RP L+ +E++ + Sbjct: 115 DVLLTAHHQGDVVETVLMR--QITGRPLRSLQGIADCQPFAKGQLI-RPLLKFTKEELDA 171 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205 + + ED +N + R R+R Sbjct: 172 AV------FYEDSTNQGVDYFRNRIR 191 >gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] gi|262087222|gb|ACY23190.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] Length = 317 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 24/191 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+ V +SGG DS+ L A ++ +A+ VDH L+ + D + L Sbjct: 24 HVCVGLSGGPDSLALTAAAVRA-------GLRVTALVVDHGLQANSADVASTAAATARAL 76 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A ++ + + GL AAAR ARY+ + + + ++ HT DDQ ETV + Sbjct: 77 GAAAVILPVRVGR-DGGLEAAARAARYSALD---AARDGSPVLLGHTMDDQAETVLLGLA 132 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + ++GM W RP L RR + + ++ DP N D Sbjct: 133 RGSGARS--IAGM--------RTWTPPWGRPLLGVRRTQTAAMCAELGLTPYADPHNRDP 182 Query: 198 RFERVRVRRFV 208 RF RVRVR V Sbjct: 183 RFTRVRVRTDV 193 >gi|283455476|ref|YP_003360040.1| lysidine synthetase [Bifidobacterium dentium Bd1] gi|283102110|gb|ADB09216.1| Putative lysidine synthetase [Bifidobacterium dentium Bd1] Length = 366 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + S G ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV-- 135 + ++ N + GL AAAREARYA I E + +A ++ AHT +DQ ETV Sbjct: 102 LDPVRVRAIEVHGNGQ---GLEAAAREARYAAIVE--ECSDAAAVLLAHTKNDQAETVLI 156 Query: 136 -YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +RS A GM S D + + RP+L RE+ + W +DP+N Sbjct: 157 GLLRSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTN 210 Query: 195 TDD 197 D Sbjct: 211 GPD 213 >gi|322388490|ref|ZP_08062093.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779] gi|321140803|gb|EFX36305.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779] Length = 425 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 18/196 (9%) Query: 12 FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F+ + H +++A+SGG DSM L L L+ + I+ V+H R + E Sbjct: 10 FLEKGYFEGHSRVVLALSGGLDSMFLFQLL---LTYQKELDIELFLAHVNHKQRPESDKE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + V + + AR+ RY E + ++T ++TAH D Sbjct: 67 ENELRKLAEQAGVPIYVACFTGDFSEVN----ARQFRYEFFREVMEKTSSTALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ET++MR R + LS + + ++ I RP L ++D I Sbjct: 123 DQVETIFMRLIR--GVRLQHLSAIKERQIFAKGELI-RPLLSFYKKDFPE------IEHF 173 Query: 190 EDPSNTDDRFERVRVR 205 ED +N ++ + R R+R Sbjct: 174 EDSTNKENHYLRNRIR 189 >gi|296875509|ref|ZP_06899581.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 15912] gi|296433433|gb|EFH19208.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 15912] Length = 424 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 24/188 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSDV-C 77 +LVA+SGG DSM L L+ ++ KI V+H R + + E+R ++D Sbjct: 21 VLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHGQRPESDLEESELRTLADRRE 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R+ +AH + +K AR RY + + + T ++T H +DQ ET +M Sbjct: 78 TRIHVAHYSGDFTEAK--------ARTFRYDFFKQIMEKEDCTALVTGHHANDQAETTFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R K LSG+ + I RP L ++++ I ED SN Sbjct: 130 RLIR--GTKLRHLSGIPVRQPFGKGELI-RPLLTFTKDELME------IPHFEDSSNDSQ 180 Query: 198 RFERVRVR 205 + R RVR Sbjct: 181 DYFRNRVR 188 >gi|227888869|ref|ZP_04006674.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] gi|227850562|gb|EEJ60648.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] Length = 118 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS+ LL L + L + S I +DHCLR+ + E + + + S L++ Sbjct: 21 LLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALKV 77 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISE 112 W PQ G+ A ARE RYA ++E Sbjct: 78 KLVEKKWPVELHPQAGVEAKAREYRYAFLAE 108 >gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 815 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 8/140 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +I +AVSGG DSM L ++ + + A VDH RE + DE V+ Sbjct: 40 PRNIALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKVAGWIK 99 Query: 79 RLRIAHSVVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + V++ W K+ AR RY + T N + H DD + Sbjct: 100 SMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNV 159 Query: 133 ETVYMRSQRDYAEKGMGLSG 152 ET +R + + GL+G Sbjct: 160 ETALLRLAQGHGR--FGLAG 177 >gi|212550361|ref|YP_002308678.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548599|dbj|BAG83267.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 447 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 21/192 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 A I+V VSGG DS LL LH + K A + LR E+ +DE ++ + + Sbjct: 24 AKIVVGVSGGVDSSVLLYILHHL-------GYKCQAAHCNFHLRGDESCRDE-KHAALLA 75 Query: 78 SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 S + + + + + + AAR RY + NA +I AH D +E Sbjct: 76 SSMNLVFFKKDFNTQYLAQRNKISIEMAARVLRYKWFEYLRQEQNAEVIAVAHHKGDNIE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G G+ G+ + + I RP L R++I F I + +D S Sbjct: 136 TLLLNLVR-----GTGIRGLKG--IRPKHGKIIRPLLDITRQEIVQFAKDNRIVYVDDSS 188 Query: 194 NTDDRFERVRVR 205 N +++ R ++R Sbjct: 189 NFEEKHIRNKIR 200 >gi|157147380|ref|YP_001454699.1| tRNA(Ile)-lysidine synthetase [Citrobacter koseri ATCC BAA-895] gi|157084585|gb|ABV14263.1| hypothetical protein CKO_03178 [Citrobacter koseri ATCC BAA-895] Length = 440 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 11/189 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYV 73 SL+ ILVA SGG DS + LH ++ R + AI + H L A V + Sbjct: 11 SLLPYRQILVAFSGGLDST---VLLHQLVQWREQQPDVTLRAIHIHHGLSSHADSWVTHC 67 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQL 132 VC + ++ V + + Q + +AR A + A+ ++ +++TA DDQ Sbjct: 68 EAVCQQWQVPLVV---RRVQLQDEGLGIEAQARQARYAAFAQALHPGEVLVTAQHLDDQC 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G LS M + + I RP L R + + + + W ED Sbjct: 125 ETFLLALKRGSGPAG--LSAMGERSSFAGTQLI-RPLLGETRAALEQWAKRYALRWIEDE 181 Query: 193 SNTDDRFER 201 SN DD ++R Sbjct: 182 SNQDDVYDR 190 >gi|296273321|ref|YP_003655952.1| PP-loop domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097495|gb|ADG93445.1| PP-loop domain protein [Arcobacter nitrofigilis DSM 7299] Length = 250 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 17/186 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV SGG DS L+ AL+ + F +F A++V + + E +V ++S C++ Sbjct: 28 VLVGFSGGKDSTTLIHALNHIKKVTPF-DFEFKAVTVTYGMGE----QVEFLSKHCAKHG 82 Query: 82 IAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ S + + + + R + A+ + H DD +E+ Sbjct: 83 IEHEIIDTEIFELSKEKIRKNSSFCSFFSRMRRGYLYSTAQEQGYNKLALGHHLDDAMES 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M ++ G L M + L + RP + CR +R+F IS D + Sbjct: 143 FFM----NFLYNG-ALRSMPPRYKAENGLEVIRPLIFCRERQLRAFAQTNEISVIGDEAC 197 Query: 195 TDDRFE 200 RF+ Sbjct: 198 PAMRFD 203 >gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum] gi|122211731|sp|Q32RJ9|TILS_ZYGCR RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61393739|gb|AAX45881.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum] Length = 420 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 20/145 (13%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +S+++P IL+AVSGG DS+ LL L+ + RS K + DH + + + Sbjct: 49 KSILHPYQRILIAVSGGQDSICLLNILNKL---RSTWHWKLGIVHCDHKWYLDSALQAIH 105 Query: 73 VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 VS + + ++I A + S N + AR RY LI A N ++I+T HT Sbjct: 106 VSRLAANMQIDLYQALTTQSVNNEQ-------LARNWRYELIRHVAICHNFSVIVTGHTA 158 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGM 153 D++ET+ R G G+SG+ Sbjct: 159 SDRVETLIYNLIR-----GSGISGL 178 >gi|326799033|ref|YP_004316852.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21] gi|326549797|gb|ADZ78182.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21] Length = 443 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 25/191 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVCS 78 L+AVSGG DS+ L++ L F K K + HC LR + A + V ++ + Sbjct: 24 LLAVSGGRDSV-LMVHL--------FAKAKL-PFGIAHCNFQLRGQHADADEELVRNLAA 73 Query: 79 RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + V + K + AAR RY + + I AH +D +ET Sbjct: 74 EMEVPLFVKRFDTIAYAKKQGISIEMAARALRYEWFEQIRSDQHYRYIALAHHQNDSVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R G G++G+ IL + I RP L RE++ +L+RN+ + ED SN Sbjct: 134 VLLNLTR-----GTGIAGL-HGILPKRGVLI-RPLLFLTREEVTQTVLERNLVYREDESN 186 Query: 195 TDDRFERVRVR 205 + R ++R Sbjct: 187 FSTDYLRNKIR 197 >gi|116510859|ref|YP_808075.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp. cremoris SK11] gi|116106513|gb|ABJ71653.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp. cremoris SK11] Length = 422 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 20/204 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + ++F + + IL+A+SGG DSM L L+ + R+ I+ ++H Sbjct: 8 FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E + + + S L I V + + ARE RY + N + Sbjct: 61 LRPESDFEEQSLRKMASDLEIPIFVDRFSGEFTEQ----KAREFRYHFFEKIMIAENYDV 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + I RP L+ +E++ + + Sbjct: 117 LLTAHHQGDVVETVLMR--QITGRPLRSLQGIADCQPFAKGQLI-RPLLKFTKEELDAAV 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + ED +N + R R+R Sbjct: 174 ------FYEDSTNQGVDYFRNRIR 191 >gi|304314090|ref|YP_003849237.1| ATPase [Methanothermobacter marburgensis str. Marburg] gi|302587549|gb|ADL57924.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg] Length = 314 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 13/126 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS+ ++ + L +R+ I+ A+++D + +D +R C+ Sbjct: 51 VLVGLSGGKDSV-MVTDILDELRNRNI--IELEAVTIDEGISGYREDGIRAAGRFCAERG 107 Query: 82 IAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H VV K+ P G R +++ A+ AT I T H DD+ Sbjct: 108 IPHRVVKLKDYAGITLDEIMKNPSRGACTYCGVFRRWILNREARKSGATKIATGHNLDDE 167 Query: 132 LETVYM 137 + + M Sbjct: 168 CQAIVM 173 >gi|15679734|ref|NP_276852.1| hypothetical protein MTH1742 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622874|gb|AAB86212.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 270 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LV +SGG DS+ ++I + L +R+ I+ A+++D + +D VR +C+ Sbjct: 15 RVLVGLSGGKDSV-MVIDILDELRERNI--IELEAVTIDEGIGGYREDGVRIARKICADR 71 Query: 81 RIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H VVS ++ P R +++ A+ AT I T H DD Sbjct: 72 GIPHRVVSLEDYAGITLDEIMKNPSRSACTYCGVFRRWILNREARKSKATKIATGHNLDD 131 Query: 131 QLETVYM 137 + + + M Sbjct: 132 ETQAIVM 138 >gi|172037514|ref|YP_001804015.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece sp. ATCC 51142] gi|171698968|gb|ACB51949.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece sp. ATCC 51142] Length = 323 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%) Query: 15 SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--V 70 SL+ P ++L+AVSGG DS+ LL + + + +++ HC A D Sbjct: 16 SLILPRKNNLLIAVSGGQDSLCLLKLMIDLQKKWGWN------LAIGHCDHGWASDLGIA 69 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +V ++ + +I + K ++ AAARE RY + E AK T ++T HT D Sbjct: 70 DHVRELANDWQIPFYL---KVAEAMEETEAAAREWRYHSLIEIAKEHQFTEVLTGHTLSD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + ET+ R G+G + +NL RP L+ R + F Q ++ E Sbjct: 127 RAETLLYNLIRGAGSNGLGALTWKRPLTNKINL--VRPLLKVSRSETLEFCKQFSLPIWE 184 Query: 191 DPSNTDDRFERVRVRR 206 D N + + R R+R+ Sbjct: 185 DAVNANLDYARNRIRQ 200 >gi|300088508|ref|YP_003759030.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528241|gb|ADJ26709.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 479 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 23/190 (12%) Query: 28 GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSV 86 GG+DS+ LL LH S + G I+F ++H LR D + +V + RL + ++ Sbjct: 34 GGADSVCLLHILHKYQS--ALG-IEFHVAHLNHGLRGGDADADAEFVRALAERLGLEATI 90 Query: 87 ----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V+ ++ L AARE RY ++E T + AHT +D +ETV + R Sbjct: 91 EKRDVAGYRARHGLTLEEAAREVRYRFLAE---TAGGDTVAVAHTRNDHVETVMLHLLR- 146 Query: 143 YAEKGMGLSGM-----CDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G GLSG+ T+ + +L I RP + R ++ ++ + + +D +N Sbjct: 147 ----GTGLSGLVGLKEASTLSHKRITSLKIIRPLICLTRAEVEAYCRASGLEYRDDATNE 202 Query: 196 DDRFERVRVR 205 R R+R Sbjct: 203 SLTPTRNRIR 212 >gi|297201398|ref|ZP_06918795.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083] gi|197713806|gb|EDY57840.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083] Length = 350 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 20/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL G ++ ++VDH L+ + ++R +V RLR Sbjct: 48 VLVACSGGADSMALASAL--AFEAPKLG-LRAGGVTVDHGLQPGS--DLR-AEEVVLRLR 101 Query: 82 -------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + +V + P+ A A A A ++ HT DDQ ET Sbjct: 102 ELGLDPVESTAVTVGREGGPEAAARDARYAALDAAAERQ----GAIAVLLGHTRDDQAET 157 Query: 135 VYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V + R + LSGM + RPFL R+ R + +++ +DP Sbjct: 158 VLLGLARGSGIR--SLSGMAAVSGGPGAARRYRRPFLGLDRQTARKACMVQSLPVWDDPH 215 Query: 194 NTDDRFERVRVR 205 NTD + R R+R Sbjct: 216 NTDPAYTRSRLR 227 >gi|145596819|ref|YP_001161116.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440] gi|189035971|sp|A4XCT1|TILS_SALTO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|145306156|gb|ABP56738.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440] Length = 333 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 97/211 (45%), Gaps = 15/211 (7%) Query: 5 PIESVRFFVR----SLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISV 58 P+ ++R +R L P +LVA SGG+DS+ L A V RS G + +V Sbjct: 7 PVAAIRRAIRHALIELPDPGPVLVACSGGADSLALAAATAFVAPRLGRSAGLV-----TV 61 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 DH L+E + V+D +A VV S G AAAR+ARY ++E A + Sbjct: 62 DHGLQEGSAQRAAAVADWARATGLAPVEVVRVDVSGRPGGPEAAARQARYRALTEVAGGL 121 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++T HT DDQ ETV + R + GL+GM L + RP L RE Sbjct: 122 GAAALLTGHTRDDQAETVLLALARGAGPR--GLAGMPARRWLGAALLL-RPLLEVSREQT 178 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R+ + DP N D + R RVR V Sbjct: 179 RAACTALGLDPWVDPHNADPAYARARVRAEV 209 >gi|225572140|ref|ZP_03781004.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM 10507] gi|225040406|gb|EEG50652.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL AL + R F + AI+VD + D+++ +C + Sbjct: 26 IAVGISGGKDSLTLLYALAGL---RRFYPNPFELEAITVDMGFGDFHTDKIQ---QLCDK 79 Query: 80 LRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + ++VV + SK ++ + + R ++E AK +N I AH DD +E Sbjct: 80 LEVPYTVVPTEISKIIFQDRKESNPCSLCAKMRKGALNEVAKKLNCNKIAYAHHKDDVVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + + + S M T ++L + RP L DI F + ++ + Sbjct: 140 TMLLSLI--FEGRFHTFSPM--TYWDRMDLTLIRPLLYVDEADIIGFKNKYDLPVEKSAC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 D +R + +R ++L +K + F Sbjct: 196 PADGNTKREYAKDLLRTLNLENPGVKQRMF 225 >gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] gi|325554637|gb|EGD24312.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] Length = 244 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM YD W RP LR RR+ R Sbjct: 41 VLLGHTLDDQAETVLLGLAR--GSGGRSIRGMAG---YDAP-W-GRPLLRVRRDVTRRAC 93 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + EDP N D F RVR+R V Sbjct: 94 AELGLVAHEDPHNADPAFTRVRLRTEV 120 >gi|323142054|ref|ZP_08076902.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] gi|322413441|gb|EFY04312.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] Length = 328 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 36/213 (16%) Query: 9 VRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66 +R +++L+ P AH L+AVSGG+DS+ L A ++ + G +S V+H LR E A Sbjct: 11 LRKTIKNLLQPEAHYLLAVSGGADSLALAHACAALAAQ---GWGSYSVCHVEHGLRGEEA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH------------- 113 +++ V C W + AA+ A+ L +E Sbjct: 68 LRDMQAVQRACK---------DWGLPCFTEHVQAASYAAQNRLSTEDAARRLRYAALRRI 118 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRC 172 A+ A I+TAH DQ ET+ +R R +G+ G+ D I+ RP L Sbjct: 119 AEQQGAAAIVTAHHEGDQAETLLLRLLRGAGLQGLAGMRAQQDDII--------RPLLTL 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + + + I+ C D +N D + R RVR Sbjct: 171 PKSLLEEYCSAEGIAVCYDSTNADTAYTRNRVR 203 >gi|255076007|ref|XP_002501678.1| predicted protein [Micromonas sp. RCC299] gi|226516942|gb|ACO62936.1| predicted protein [Micromonas sp. RCC299] Length = 780 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 11/167 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + +++SGG DSM L L + SFG A+ +D+ R + E +V C Sbjct: 295 PRSVAISLSGGVDSMVLATILKAAAP--SFGDFDVVAMHIDYANRPESGKEADFVRGWCE 352 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R I V K P+ A +R RY L E AKT + H D E Sbjct: 353 RKGIVCVVRRIAEVKRGVTPREQYEAESRAIRYGLYKECAKTHGFPAVFVGHHEGDVQEN 412 Query: 135 VYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSF 180 + R +G++GM + ++ + +W RP L ++ + F Sbjct: 413 IIANIFR--GANVLGMNGMNEEGVVEGVRIW--RPMLPHSKDPVLDF 455 >gi|303286641|ref|XP_003062610.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456127|gb|EEH53429.1| predicted protein [Micromonas pusilla CCMP1545] Length = 758 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 14/188 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S +PA + +++SGG DSM L + L + D S+G A+ +D+ R + E +V Sbjct: 273 SPAWPA-VGISLSGGVDSMALAVILKRLSRDASYGGFDVVAMHIDYDNRPESGVEADFVR 331 Query: 75 DVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C R+ I V + P+ A +R RY + AKT + H D Sbjct: 332 GWCDRMGIECVVRKIAEVTRGVTPREQYEAESRAIRYGFYKDVAKTHAFPAVFVGHHEGD 391 Query: 131 QLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 E + MR A GM +G+ + + +W RP L + + F + + Sbjct: 392 VQENIIANLMRGANLLAVNGMEETGVVEGVA----IW--RPMLPHSKAVVLDFAHKYGVP 445 Query: 188 WCEDPSNT 195 + D + T Sbjct: 446 YFLDSTPT 453 >gi|61217331|sp|Q7UA26|TILS_SYNPX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 337 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 12/188 (6%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 AVSGG DSM LL+ L + + + DH + + C + + Sbjct: 38 AVSGGQDSMALLVLLQEL---QRLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 94 Query: 85 SVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + PQ T A+AR RY+ + + A+ + A ++T HT D+ ET+ ++ R Sbjct: 95 QV----DQAPQGSTASEASARHWRYSQLQQRAEELGAD-VVTGHTASDRAETLLLQLARG 149 Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+G + D + RP L R D + + DPSN F Sbjct: 150 TDLAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFA 209 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 210 RNRIRAEV 217 >gi|303249015|ref|ZP_07335260.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ] gi|302489601|gb|EFL49541.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ] Length = 330 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 GL A R ARYA E H DD E MR R G G G+ Sbjct: 99 GLEDAGRLARYAFFEELRGARPNAWTALGHQRDDLAEDQIMRLIR-----GTGWPGLGGM 153 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D + I RP L R DI +F ++ DPSN D + R RVR Sbjct: 154 AALDPSRRILRPLLMTPRSDIEAFADALSLPVVRDPSNNDPAYRRNRVR 202 >gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] gi|326954535|gb|AEA28232.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] Length = 328 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G G + +D W +RP L RR R+ Sbjct: 125 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPWDPP-W-ARPLLGVRRATTRAAC 177 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + DP N D RF RVR+RR V Sbjct: 178 AELGATAWNDPHNDDPRFTRVRLRREV 204 >gi|197122778|ref|YP_002134729.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K] gi|196172627|gb|ACG73600.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K] Length = 450 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 20/197 (10%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L PA +LVA+SGG+DS LL AL ++ + +++ A+ +DH LR ++ E Sbjct: 20 RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRAGSEPEAAS 77 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C+RL + V N + A AR RYA + E A AT I T HT Sbjct: 78 ARAACARLGVPLEERRLAVGAGN------VQAEARRVRYAALREAAARAGATRIATGHTL 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ETV +R R +G+ + + RP + RE+ ++L + W Sbjct: 132 GDQAETVLLRLLRGAGARGL-------AAIPPRRGAVIRPLIDRTREEGNAYLRAIGLRW 184 Query: 189 CEDPSNTDDRFERVRVR 205 +DP+N + R R+R Sbjct: 185 ADDPTNAVPGYARNRLR 201 >gi|313678897|ref|YP_004056637.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45] gi|312950653|gb|ADR25248.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45] Length = 286 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 15/193 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL L+S D +V++ +RE + +V V C Sbjct: 2 ILLGVSGGPDSMYLLDLLYSKRKD-------IVVATVNYNVRENSSYDVEVVRKYCQEKE 54 Query: 82 I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I H + KN+ + AR R+ + + N + AH DD +E+ +M+ Sbjct: 55 IIFEHLEID-KNACFKGNFEQWARNIRFDFFKKLYEKYNCEALYLAHQKDDFIESYFMQK 113 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + G+ + ++ +N + RP + + + +I +L + I + D +N Sbjct: 114 ESNRKPDFFGIRAQNE--IFGMN--VLRPLVNKVFKSEILDYLHKNKIDYAYDYTNDLTI 169 Query: 199 FERVRVRRFVRDI 211 + R ++R ++++ Sbjct: 170 YTRNKIRDRLKNL 182 >gi|238027917|ref|YP_002912148.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1] gi|237877111|gb|ACR29444.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1] Length = 479 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 26/220 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCL 62 +++VR + +L A I +A SGG DS SVL D + + A+ V H L Sbjct: 14 LDAVRGALDALPEAATIAIAYSGGLDS--------SVLLDAAVRVAGAARCVALHVHHGL 65 Query: 63 RETAKDEVRYVSDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 A + + + + L + A V + S G+ A+ARE RY + + A Sbjct: 66 SPNADAWLAHAAACAAALGVCFDAQRVEVPRESG--LGVEASARELRYRALDALGERHGA 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG---MCDTILYDLNLWIS-RPFLRCRRE 175 + A DDQ ETV ++ R G GL+G M L D + RP L R Sbjct: 124 QALWIAQHADDQAETVLLQLLR-----GAGLAGIAAMAPRYLPDGATIVRMRPLLSLLRA 178 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLH 214 + + R + W +D SN D R+ R +R R + ++ +H Sbjct: 179 QLERYAEARALRWIDDESNADTRYARNALRARVLPELAVH 218 >gi|255530408|ref|YP_003090780.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366] gi|255343392|gb|ACU02718.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366] Length = 465 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 IL+AVSGG DS+ L+A LS +FG + HC LR E+ +DE +V + Sbjct: 23 ILLAVSGGKDSV--LMAHLFKLSGFNFG--------IAHCNFNLRGAESQRDEA-FVKML 71 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + +V + ++ + AAR RY E I A +D + Sbjct: 72 AASMDVPFHLVHFHTKAYAARHKVSTQMAARTLRYQWFEEVRLAQGYKAIALAQHQNDAI 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R G G++GM + W+ RP L DI + + + + ED Sbjct: 132 ETVLLNLVR-----GTGIAGMHGIL--PKRGWLIRPLLFLSGGDIAALVKSFELDYVEDS 184 Query: 193 SNTDDRFERVRVR 205 SN + R ++R Sbjct: 185 SNKSTDYVRNKLR 197 >gi|167903369|ref|ZP_02490574.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei NCTC 13177] Length = 492 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 19/191 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 82 IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ACFGAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLL 144 Query: 141 RDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G G++G+ L D+ RP L R + + Q + W +D SN Sbjct: 145 R-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDESN 197 Query: 195 TDDRFERVRVR 205 TD R+ R +R Sbjct: 198 TDTRYARNALR 208 >gi|33864611|ref|NP_896170.1| MesJ-like protein [Synechococcus sp. WH 8102] gi|33632134|emb|CAE06590.1| possible MesJ homolog [Synechococcus sp. WH 8102] Length = 349 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 12/188 (6%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 AVSGG DSM LL+ L + + + DH + + C + + Sbjct: 50 AVSGGQDSMALLVLLQEL---QRLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 106 Query: 85 SVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + PQ T A+AR RY+ + + A+ + A ++T HT D+ ET+ ++ R Sbjct: 107 QV----DQAPQGSTASEASARHWRYSQLQQRAEELGAD-VVTGHTASDRAETLLLQLARG 161 Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+G + D + RP L R D + + DPSN F Sbjct: 162 TDLAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFA 221 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 222 RNRIRAEV 229 >gi|332295572|ref|YP_004437495.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796] gi|332178675|gb|AEE14364.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796] Length = 438 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG+DS+ L L + S K F + DH R+ KD + + + + Sbjct: 30 IAISGGADSVFLTYILSRLKS-----KDDFILLHFDHGWRK--KDLILERNLIINYAEKY 82 Query: 84 HSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + + +S L AR+ R+A IN+ ++ T H +D+ ET R Sbjct: 83 NFRIIFGSSGNTGSLNEEDARKRRFAFFCNIMDKINSNVLFTGHNLNDRFETFLWNICR- 141 Query: 143 YAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G G+ G+ I + I P + +R+ IR+F + + D N D R++ Sbjct: 142 ----GTGIRGILSLKEIRQFGKINIISPLIHLKRDKIRTFCEYLKLDYISDFYNDDIRYK 197 Query: 201 RVRVRR 206 RV +R+ Sbjct: 198 RVFIRK 203 >gi|61216588|sp|Q7NNL0|TILS_GLOVI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 325 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL L + +R + +DH R ++ + + V+ +C+ Sbjct: 30 LLVAVSGGQDSLCLLKLLVDLAPERG---LHLHVGHLDHRWRPGSERDAQRVAVLCNVWG 86 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + ++ AAAR RY + + A+ + ++T HT D+ ETV R Sbjct: 87 VPFHL---EIARTPPASEAAARAWRYCWLEQIARGLALERVVTGHTLSDRAETVLFNLLR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+G + + L RP L R + ++ L ++ C D SN + F R Sbjct: 144 GSGGAGLGSLDWERPLGGGVRL--VRPLLGITRAETGAYCLAHHLPICIDESNANLTFRR 201 Query: 202 VRVR 205 R+R Sbjct: 202 NRIR 205 >gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae] gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 286 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 17/218 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL + S SD +V++ +R + + V C Sbjct: 2 ILLGVSGGPDSMYLLDLISSQRSD-------IVVATVNYNVRHDSAYDAEIVRKFCEDKD 54 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + ++ + ARE R++ + + N + AH DD LE+ +M+ + Sbjct: 55 IIFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDDFLESYFMQKE 114 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+ T Y + + RP + + + +I L + I + D +N + Sbjct: 115 SKRQPDFFGIK----TENYIYGMKVVRPLVDKVFKNEILEALHNKKIKYANDYTNDLPIY 170 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R R+R +++ + K K F D++ K NN +A+L Sbjct: 171 TRNRIRIWLKSLSNSQ---KSKIFDDIQ-KENNELAVL 204 >gi|78211629|ref|YP_380408.1| MesJ-like protein [Synechococcus sp. CC9605] gi|78196088|gb|ABB33853.1| possible MesJ [Synechococcus sp. CC9605] Length = 334 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 27/260 (10%) Query: 10 RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R ++ + P + +L+AVSGG DSM LL L + +G + DH + + Sbjct: 21 RLLMQPQLLPKGSSLLLAVSGGQDSMALLALLQDLAPLHGWG---LNLWHGDHGWHDNSS 77 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +S C + +++ V + + + A AR+ RY +++ A ++T HT Sbjct: 78 RIAAELSSWCKQRQLSLQVD--QAAPGEVPSEAKARQWRYERLAQRGNQAGAD-VVTGHT 134 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQ 183 D+ ET+ ++ R G L+G+ L + RP L +R D Sbjct: 135 ASDRAETMLLQLAR-----GSDLAGLAALPSVRPLSPEGPRLRRPLLHLQRRDTLQICRD 189 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI--DLHA--------LYLKMKKFQDLRVKVNNA 233 + EDPSN F R R+R+ V + +LH L ++ + +D + +++ Sbjct: 190 LALPIWEDPSNQSPEFARNRIRQEVLPVLEELHPGCSQRISDLAERVSQVRDSQTELSQM 249 Query: 234 VAMLIPKYLTVHMRSIIAIS 253 L+ + R + A+S Sbjct: 250 ALELLQTAAGLDRRGLGALS 269 >gi|186685996|ref|YP_001869192.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] gi|186468448|gb|ACC84249.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] Length = 331 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DS+ L+ L + S + DH R ++ +V ++ Sbjct: 26 LLIAVSGGQDSLCLIKLLLDLKSKWGW---DLGIAHCDHRWRSDSQANANHVENLAETWG 82 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I+ + + + AAAR+ RY +S A+ N I+T HT D+ ET+ R Sbjct: 83 ISFYL---ETANEPINSEAAARDWRYQALSAIAQANNYQYIVTGHTASDRAETLLYNLIR 139 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 GL + + + RP L R F + + ED +N D ++ R Sbjct: 140 GTGAD--GLQALTWQRPLTTGIMLVRPLLEVTRIQTEQFCQEFKLPIWEDSTNQDLQYAR 197 Query: 202 VRVRR 206 R+R+ Sbjct: 198 NRIRQ 202 >gi|78189702|ref|YP_380040.1| MesJ protein [Chlorobium chlorochromatii CaD3] gi|78171901|gb|ABB28997.1| MesJ protein [Chlorobium chlorochromatii CaD3] Length = 354 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 27/195 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----------VR 71 +L+AVSGG DSM LL +V + F + + + LR++ D R Sbjct: 53 VLLAVSGGPDSMALLSLFCAV---QPFLQCSLALAHCNFQLRDSESDSDEAFVQEQATAR 109 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + R + +WK S L +AR RYA + + T H +D Sbjct: 110 NLPCFVERFETRNVAATWKKS-----LEESARLLRYAFFERLMQVHGFHKVATGHHVNDN 164 Query: 132 LETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET+ R + G+ G+ TI+ RP L + I ++L ++ I + Sbjct: 165 AETILFNLVRGTSLLGLRGIRAQHGTII--------RPMLLLHKPAITTYLHEQQIPYRV 216 Query: 191 DPSNTDDRFERVRVR 205 D SN ++R +R Sbjct: 217 DSSNEGTEYDRNFIR 231 >gi|116753888|ref|YP_843006.1| PP-loop domain-containing protein [Methanosaeta thermophila PT] gi|116665339|gb|ABK14366.1| PP-loop domain protein [Methanosaeta thermophila PT] Length = 326 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 20/151 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + R F R + VA+SGG DS LL L + S R I+ A+ VD + Sbjct: 39 LRTYRIFSRG----GRVAVALSGGKDSSVLLYTLKRIFSHRR--DIELIALMVDEGISGY 92 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHA 114 +D ++ + + RL + H +S++ T A R+ R L+++ A Sbjct: 93 REDTLQNAAALADRLDVPHITLSFREEFGITIDEIAERDLHQAPCTYCGVMRKHLLNKRA 152 Query: 115 KTINATLIMTAHTFDDQLETV---YMRSQRD 142 + +NA + T H DD+ +T+ Y+R D Sbjct: 153 RELNAIALATGHNLDDEAQTILLNYLRGDVD 183 >gi|167894984|ref|ZP_02482386.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 7894] gi|167919622|ref|ZP_02506713.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei BCC215] Length = 492 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NT+ R+ R +R Sbjct: 197 NTNTRYARNALR 208 >gi|294055282|ref|YP_003548940.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM 45221] gi|293614615|gb|ADE54770.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM 45221] Length = 483 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 15/190 (7%) Query: 22 ILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LVA SGG+DS +G+L A +L ++ +H R + DE +V + Sbjct: 39 VLVACSGGADSVFLLGILWANAELLG------VELVVAHYNHRWRGSESDEDARFVEVMA 92 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + + K AR R + A N I H D LET R Sbjct: 93 KTLGCTYLTETRPEKEAAFTETTARALRLDFLRRAATEANCDCIALGHQQGDILETQLQR 152 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R +G+ ++ + RP L R D+R + + WCED SN D Sbjct: 153 IARGSGSEGLA----APRPIHRFERYPPHVRPLLNMRSGDVRMAVAACGLPWCEDSSNDD 208 Query: 197 DRFERVRVRR 206 R +RR Sbjct: 209 LSIPRNALRR 218 >gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] gi|296026425|gb|ADG77195.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] Length = 312 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 13/90 (14%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIR 178 ++ HT DDQ ETV + R + L+GM W RP L RR R Sbjct: 118 VLLGHTLDDQAETVLLGLGRGSGARS--LAGMA--------AWAEPYGRPLLGVRRAVTR 167 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + + +DP NTD R+ RVR+R V Sbjct: 168 QACAELGLDPWDDPHNTDARYTRVRLRHEV 197 >gi|302521005|ref|ZP_07273347.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78] gi|302429900|gb|EFL01716.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78] Length = 207 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I+ HT DDQ ETV + R + LSGM + + RPFLR R+ Sbjct: 1 GAAAILLGHTRDDQAETVLLGLARGSGTRS--LSGMAE--ISGPGGRYRRPFLRIDRQTA 56 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205 R + +++ +DP NTD + R R+R Sbjct: 57 RKACMVQSLPVWDDPHNTDPAYTRSRLR 84 >gi|319957784|ref|YP_004169047.1| tRNA(ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511] gi|319420188|gb|ADV47298.1| tRNA(Ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511] Length = 344 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 95 QTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-G 149 ++ A AR RY +LI EH ++TAH +D+LE + MR R + G Sbjct: 87 RSNFEAEARRFRYDFFESLIDEHGYEN----LLTAHQLNDRLEWMMMRLIRGAGTVELAG 142 Query: 150 LSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + + + + RP L + ++ +L R + W ED SN D +ER R+R Sbjct: 143 MEAVAKRFTASGTPYRLIRPLLETPKYELEHYLRSRGVEWFEDSSNASDTYERNRLR 199 >gi|126439105|ref|YP_001059568.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668] gi|126218598|gb|ABN82104.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668] Length = 489 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 21/192 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 I +A SGG DS + LH+ G + A+ V H L A + + ++ L Sbjct: 30 IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84 Query: 81 -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + V + Q G+ A+AR+ARY + A + A DDQ ETV ++ Sbjct: 85 ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143 Query: 140 QRDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 R G G++G+ L D+ RP L R + + Q + W +D S Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196 Query: 194 NTDDRFERVRVR 205 NT+ R+ R +R Sbjct: 197 NTNTRYARNALR 208 >gi|182437879|ref|YP_001825598.1| hypothetical protein SGR_4086 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778515|ref|ZP_08237780.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1] gi|178466395|dbj|BAG20915.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658848|gb|EGE43694.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1] Length = 370 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L+ + ++V +RL Sbjct: 71 VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 124 Query: 82 I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A +V + P+ A YA + A+ A ++ HT DDQ ET Sbjct: 125 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 180 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM RPFL+ R+ +R L +++ +DP N Sbjct: 181 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQAVRKACLVQSLPVWDDPHN 236 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 237 IDPAYTRSRLR 247 >gi|78183658|ref|YP_376092.1| MesJ-like protein [Synechococcus sp. CC9902] gi|78167952|gb|ABB25049.1| possible MesJ-like [Synechococcus sp. CC9902] Length = 337 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 8/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG DSM LL L ++ + + + DH + ++ C Sbjct: 35 LVVAVSGGQDSMALLGLLRDLMPVHQWRLVLWHG---DHHWHPHSSQIASELNQWCDGQT 91 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + PQT A AR RY +++ T A + T HT D+ ET+ M+ R Sbjct: 92 LPLQIDTAPEDVPQT--EADARSWRYRCLTQLTHTHRADAV-TGHTASDRAETLLMQMSR 148 Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+G + + RP L RR++ + DP N F Sbjct: 149 GSDLAGLGSLRAVRPLQAHAPEGPQLRRPLLGFRRKETAQICSDLQLPIWNDPGNQSPDF 208 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 209 ARNRIRHEV 217 >gi|295098771|emb|CBK87860.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium cylindroides T2-87] Length = 380 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 17/173 (9%) Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHAK 115 V++ R+TA + + V D C I V ++ N ++ + AR+ RY E A Sbjct: 19 VNYHKRDTANRDEKIVRDYCQERSIEVEVQEPTFDN---KSNFQSWARKVRYDFFFELAT 75 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH DD LET + R+ GL + I+ + I RP L + Sbjct: 76 KNDTDQIYVAHHLDDHLETYLFQKSRNMLCDHYGLKS--ENIMKGMK--IIRPLLEETKA 131 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 + + Q NI + D SN + + R ++R H+ KM + LR+ Sbjct: 132 QLIEYCDQNNIEYGIDESNLGNDYTRNKIR--------HSQIEKMSLLEKLRL 176 >gi|155122075|gb|ABT13943.1| hypothetical protein MT325_M389R [Paramecium bursaria chlorella virus MT325] Length = 499 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++++SGGSDSM +H + +FG + V++ R +A E +V+D + Sbjct: 194 PTKLIMSISGGSDSMVAFHIIHGL--KEAFG-YDIDVVMVNYTNRNSAYAEEAFVADWVN 250 Query: 79 RLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 V +++ +T R+ RYA KT+ ++ H DD Sbjct: 251 SFGYPLHVRRIDEIKRKQCADNQLRTVYEKYTRDVRYATY----KTLGPHPVVMGHNKDD 306 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LE + +K LSGM DT++ + RP L + DI ++ + I + Sbjct: 307 CLENILQNIGS--CQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPFL- 362 Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYL----KMKK-FQDLRVKVNNAVAMLIPKY 241 P++T +R ++R V + D + L++ ++KK D+ V +V M + + Sbjct: 363 -PNSTPPTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 419 >gi|167720279|ref|ZP_02403515.1| putative cell cycle protein [Burkholderia pseudomallei DM98] Length = 392 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 13/115 (11%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A+AR+ARY + A + A DDQ ETV ++ R G G++G+ Sbjct: 4 GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLLR-----GAGIAGLAAM 58 Query: 157 I------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L D+ RP L R + + Q + W +D SNTD R+ R +R Sbjct: 59 APQYRPALADVVR--MRPLLHLLRAQLECYAQQHALRWIDDESNTDTRYARNALR 111 >gi|222445889|ref|ZP_03608404.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii DSM 2375] gi|222435454|gb|EEE42619.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii DSM 2375] Length = 305 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG DS+ L L+S R I A++VD + ++ V RL Sbjct: 51 VLVALSGGKDSVTTLEILNSF---RKMNVIDICAVTVDEGIDNYRQEGVDIAIRHAKRLG 107 Query: 82 IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H VVS K T G + R +I++ A+ + AT I T H DD Sbjct: 108 IEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKIATGHNLDD 167 Query: 131 QLETVYM 137 +++ + M Sbjct: 168 EVQAIMM 174 >gi|226324144|ref|ZP_03799662.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758] gi|225207693|gb|EEG90047.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758] Length = 429 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 22/161 (13%) Query: 58 VDHCLR-ETAKDEVRYVSDVCSR---------LRIAHSVVSWKNSKPQTGLMAAAREARY 107 ++H +R E AK + +V +C + + I V ++ S+ + G R AR Sbjct: 1 MNHGIRGEEAKADEEFVKTLCEKKEIPCRSVSVDIPKMAVEYRMSEEEAG-----RTARR 55 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + + A+ T I AH DD ET ++ G +Y +N R Sbjct: 56 EIFEQAAEEWGGTRIALAHHQDDNAETFFLHL-------ARGSGLRGLGGIYPVNGMYIR 108 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 P L R++I +L R + +C D +N +D + R R+R V Sbjct: 109 PLLCVGRKEIEDYLKGREMPYCIDATNMEDAYMRNRIRNHV 149 >gi|302334896|ref|YP_003800103.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084] gi|301318736|gb|ADK67223.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084] Length = 503 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%) Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I+TAHT DD+ ET +M + R +G+ +I NL I RP L E++ Sbjct: 150 AARILTAHTADDRAETFFMNAIRGTGPQGL------SSIPRRRNL-IVRPLLGRTHEELC 202 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L I W ED +N D R+ R VR V Sbjct: 203 DLLRMSGIVWREDKTNADTRYLRSYVRHEV 232 >gi|194335822|ref|YP_002017616.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194308299|gb|ACF42999.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 328 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 31/200 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77 +LVAVSGG DSM +L +V + + ++V HC LR D + +V D C Sbjct: 24 VLVAVSGGPDSMAMLSLFCAVRP------LLRAELAVAHCNFQLRGAESDGDESFVLDHC 77 Query: 78 SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 L + V WK S ++ AR RY + + + I T H Sbjct: 78 RSLDLECFVDHFDTLRFAGEWKRSVEES-----ARILRYTFFRQVMEQKGFSKIATGHHV 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D ET+ R G+ L G+ + LN I RP L + D+ ++L ++ I+ Sbjct: 133 NDNAETILFNLFR-----GVSLPGL--RGIRALNGKIIRPMLLFHKADMVAYLKEKGITS 185 Query: 189 CEDPSNTDDRFERVRVRRFV 208 D SN + ++R +R V Sbjct: 186 RTDTSNYANDYDRNFIRNRV 205 >gi|288559819|ref|YP_003423305.1| PP-loop family protein [Methanobrevibacter ruminantium M1] gi|288542529|gb|ADC46413.1| PP-loop family protein [Methanobrevibacter ruminantium M1] Length = 305 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 21/150 (14%) Query: 6 IESVRFFVRSLVYPAH-------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 IES+ VR + + +LVA+SGG DS+ L L+S R I A+++ Sbjct: 29 IESIEKKVRQTIKRENFIDRGDKVLVALSGGKDSVVTLDILNSY---RERHIIDLCAVTI 85 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARY 107 D + +D V RL I H VVS+K S + G R Sbjct: 86 DEGIAGYREDGVEIAKAHAERLGIPHKVVSFKESFGIDLDEIMAKENHRGSCTYCGVFRR 145 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I+ A+ AT I T H DD+ + + M Sbjct: 146 WIINRAARDFGATKIATGHNLDDETQAILM 175 >gi|116199727|ref|XP_001225675.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51] gi|88179298|gb|EAQ86766.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51] Length = 312 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 21/160 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS------VDHCLRETAKDEVRYVSD 75 I +A+SGG DSM L + + K+ +IS V+H LRE + E V+ Sbjct: 43 IALAISGGVDSMALAYLCSKIRQTDQWFKVVDHSISSPCGVIVNHDLREGSAIEADNVAV 102 Query: 76 VCSRLRIAHSVVS--W-----KNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAH 126 +L + VV W + +KP + AR RY + K + TAH Sbjct: 103 ATRKLGVKSHVVRIRWDEVLPEGTKPNDVPNIETLARYLRYRRLGTFCKVGQMATLFTAH 162 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYDLN 162 DDQ ETV MR + + GL GM + YDL+ Sbjct: 163 HEDDQYETVMMRLLSGHGYR--GLQGMRPAVDIPECYDLH 200 >gi|325661579|ref|ZP_08150203.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472106|gb|EGC75320.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium 4_1_37FAA] Length = 244 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F K + SAI+VD E + + +C+ Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYEEF---HLEPIEKLCA 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L + + +V + ++ + + R +++ K + + AH DD + Sbjct: 79 QLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + D+ F + ++ + Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKYDLPVVKSK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + VR ++ Sbjct: 195 CPVDGHTKRQYAKELVRQLN 214 >gi|148642613|ref|YP_001273126.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061] gi|261349566|ref|ZP_05974983.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] gi|148551630|gb|ABQ86758.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii ATCC 35061] gi|288861524|gb|EFC93822.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] Length = 305 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG DS+ L L+S R I A++VD + ++ V RL Sbjct: 51 VLVALSGGKDSVTTLEILNSF---RKMNIIDICAVTVDEGIDNYRQEGVDIAIRHAKRLG 107 Query: 82 IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H VVS K T G + R +I++ A+ + AT I T H DD Sbjct: 108 IEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKIATGHNLDD 167 Query: 131 QLETVYM 137 +++ + M Sbjct: 168 EVQAIMM 174 >gi|90994574|ref|YP_537064.1| hypothetical protein 327 [Porphyra yezoensis] gi|122194644|sp|Q1XDA4|TILS_PORYE RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|90819138|dbj|BAE92507.1| unnamed protein product [Porphyra yezoensis] Length = 329 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 12/205 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+S IE L Y + +LV+ SGG DS+ L+ L+ ++ K S I DH Sbjct: 11 FISTIEKNNL----LPYNSSLLVSFSGGQDSLALVKILYDF---KNIYNWKISLIHFDHR 63 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R D + V ++ + V + +R+ RY + A N Sbjct: 64 WRS---DSMLVSKQVIKYAKMCNLSVYYFECPKYLNTEETSRKWRYLTLINTAYVNNFNT 120 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+ AHT D+ ET+ R + G+ + ++L RP L C R + F Sbjct: 121 IVLAHTATDKAETMLSNLFRGTSLDGLSSIHWSSQLSNAVHL--VRPLLNCYRSETSWFC 178 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206 + + D SN ++ R R+R+ Sbjct: 179 RKYFLPVWIDQSNYNNSLSRNRLRQ 203 >gi|134296080|ref|YP_001119815.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4] gi|134139237|gb|ABO54980.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4] Length = 468 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 96/227 (42%), Gaps = 23/227 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V + A+ V H L Sbjct: 14 LDAVGAALSGLPADARIAIAYSGGLDSTVLLDAAVRVAG-----AARCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122 A V Y RL + + S + P+ G+ A ARE RYA + + + Sbjct: 69 ADAWVAYAQATAERLGV--TFESERVDVPRDSGLGIEATARERRYAALDAMCERHGVAAL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 A DDQ ETV ++ R G G++G+ ++ RP LR R + Sbjct: 127 WIAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLE 181 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + QR ++W +D SN D R+ R +R V L AL + F+D Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALRLDV----LPALAVHFPGFRD 224 >gi|16330873|ref|NP_441601.1| hypothetical protein slr1278 [Synechocystis sp. PCC 6803] gi|6136631|sp|P74192|TILS_SYNY3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1653367|dbj|BAA18281.1| slr1278 [Synechocystis sp. PCC 6803] Length = 330 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 17/191 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVAVSGG DS+ LL L+ + + ++V HC D ++D L Sbjct: 26 ILVAVSGGQDSLCLLHLLNDLTKQWQW------HLAVAHCDHRWPTDAG--IADHVQGLA 77 Query: 82 IAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + ++ PQT AAAR RY ++ AK N ++MT HT D+ ET+ Sbjct: 78 QGYKLPYFQRDAQDLPQT--EAAARHWRYHALTAIAKAENFPVVMTGHTQSDRAETLLFN 135 Query: 139 SQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G+ + + + + RP L R++ F Q+ +S ED N Sbjct: 136 LVRGSGSDGLQAMNWVRNLEESGSDKSPIRLIRPLLEISRQETGDFCQQQQLSVWEDVLN 195 Query: 195 TDDRFERVRVR 205 + R R+R Sbjct: 196 EKLTYRRNRIR 206 >gi|237802640|ref|YP_002887834.1| hypothetical protein JALI_2111 [Chlamydia trachomatis B/Jali20/OT] gi|231273874|emb|CAX10665.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] Length = 254 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 37 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95 Query: 82 IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + S+ S ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 96 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152 Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQ 183 AE +GM + + + + I RP + + IR F ++ Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKFAME 192 >gi|20090822|ref|NP_616897.1| hypothetical protein MA1974 [Methanosarcina acetivorans C2A] gi|19915889|gb|AAM05377.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 302 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L +H +L +R I+ A+S+D + + + L Sbjct: 52 IAVALSGGKDSSVALYVMHKILGNRP--DIQIVAVSIDEGIHGYRPHSLELAKKLTETLG 109 Query: 82 IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130 + H + S+K+ T L A RE R ++++ A I AT ++T H DD Sbjct: 110 VRHIIKSFKDEHGVTMDELAAMDREKGTCSYCGVLRKSILNRVALEIGATKLVTGHNLDD 169 Query: 131 QLETVYMRSQRDYAEK 146 + +T+ + R E+ Sbjct: 170 EAQTILLNHFRGDMER 185 >gi|172041383|ref|YP_001801097.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109] gi|171852687|emb|CAQ05663.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109] Length = 494 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 22/203 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + VSGG+DS+ L + ++ + F A+ VDH L+E + + + C + Sbjct: 107 VYLGVSGGADSLALAYTA-AGIAKKDLPGASFRALVVDHQLQEGSAEVAATAAQNCEEIG 165 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V++ G A AR A ++ AHT D E + + R Sbjct: 166 IPAQVLTIDVPG---GPGADEAAAREARYRALGAAAAGRPLLVAHTASDDAEGLLLGLAR 222 Query: 142 DYA------------------EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 + G +G + W+ RP L RED + + Sbjct: 223 GSGTGALAGLRPITTATHQRSDNGEQQAGNEHPAIAAGAGWLGRPLLDSTREDTEATCHR 282 Query: 184 RNISWCEDPSNTDDRFERVRVRR 206 +S+ DP N RF R RVR+ Sbjct: 283 AGLSFWSDPHNASPRFRRSRVRQ 305 >gi|239942229|ref|ZP_04694166.1| hypothetical protein SrosN15_14620 [Streptomyces roseosporus NRRL 15998] gi|239988695|ref|ZP_04709359.1| hypothetical protein SrosN1_15407 [Streptomyces roseosporus NRRL 11379] Length = 370 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L+ + ++V +RL Sbjct: 71 VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 124 Query: 82 I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A +V + P+ A YA + A+ A ++ HT DDQ ET Sbjct: 125 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 180 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM RPFL+ R+ R L ++I +DP N Sbjct: 181 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHN 236 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 237 IDPAYTRSRLR 247 >gi|81299947|ref|YP_400155.1| hypothetical protein Synpcc7942_1138 [Synechococcus elongatus PCC 7942] gi|81168828|gb|ABB57168.1| conserved hypothetical protein YCF62 [Synechococcus elongatus PCC 7942] Length = 336 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DS+ L+ L + + + DH R + ++ + + + Sbjct: 40 LLLAVSGGQDSLALVQLLRGL---QPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQ 96 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + ++ +P AAAR RY ++ A I+A L++T HT D+ ET+ R Sbjct: 97 LPFYCQ--RSPEPPRS-EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTR 153 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ S L D L + RPFL R + + Q + ED +N D RF R Sbjct: 154 GSHLQGLA-SLRWQRSLSD-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFAR 211 Query: 202 VRVR 205 R+R Sbjct: 212 NRLR 215 >gi|295114733|emb|CBL35580.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [butyrate-producing bacterium SM4/1] Length = 482 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 30/202 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 ++V +SGG+DS+ LL S+LSD RS I+ A+ V H LR + A + + ++C + Sbjct: 39 VVVGLSGGADSVCLL----SLLSDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 94 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA-------------KTINATL---IM 123 L I ++ +N+ + + E L+ A + A L I Sbjct: 95 LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEEEEREQEGAALPVRIA 153 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DD ET+ + +G GL G+ + + + RP L R++I +L + Sbjct: 154 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 206 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 +S+ D +N + + R R+R Sbjct: 207 EGLSYVTDSTNLLNDYTRNRLR 228 >gi|331270424|ref|YP_004396916.1| hypothetical protein CbC4_2254 [Clostridium botulinum BKT015925] gi|329126974|gb|AEB76919.1| conserved hypothetical protein [Clostridium botulinum BKT015925] Length = 239 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 15/177 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL L++ + F F+ I++ L A + + +C L Sbjct: 24 IAVGLSGGKDSITLLYLLNAY---KRFSPEPFNLIAI--TLDPGAGADFSEMIHICKELN 78 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + + + + ++ + R +++HAK + I H +D +ET+ Sbjct: 79 VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKNDAIETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M +G + + DT L +L I RP + ++I++F+ NI E+P Sbjct: 139 LM----SMFYEGRINTFLPDTYLSRADLHIIRPMVYIDEQNIKTFIKNSNIPIVENP 191 >gi|71909752|ref|YP_287339.1| PP-loop [Dechloromonas aromatica RCB] gi|123626220|sp|Q477W2|TTCA_DECAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71849373|gb|AAZ48869.1| PP-loop [Dechloromonas aromatica RCB] Length = 287 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 24/229 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80 +LV VSGG DS LL A+ L R+ K + A+++D D + RY + Sbjct: 34 VLVCVSGGKDSYTLL-AMLMALQQRAPVKFRLIAMNLDQKQPGFPADILPRYFESIGIEY 92 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 RI +SVV K + +T +R R +I AK + A I H DD + T++ Sbjct: 93 RIVEADTYSVVKEKIPEGKTTCSLCSR-LRRGIIYRTAKELGANKIALGHHRDDMVHTLF 151 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 + K M + D D + + RP C DI F R + + P N Sbjct: 152 LNLLFGGKLKAMPPKLVTD----DKSHVVIRPLAYCAEADIAKF--ARGMEFPIIPCNLC 205 Query: 195 -TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + D +R ++R +++ D K++ V A+ ++P +L Sbjct: 206 GSQDNLQRQKIREMMQEWD--------KRYPGRTESVFTAMQNVVPSHL 246 >gi|317178518|dbj|BAJ56306.1| hypothetical protein HPF30_0209 [Helicobacter pylori F30] Length = 253 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H +V + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|291445684|ref|ZP_06585074.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998] gi|291348631|gb|EFE75535.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998] Length = 391 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 21/191 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL R ++ I+VDH L+ + ++V +RL Sbjct: 92 VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 145 Query: 82 I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 A +V + P+ A YA + A+ A ++ HT DDQ ET Sbjct: 146 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 201 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + LSGM RPFL+ R+ R L ++I +DP N Sbjct: 202 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHN 257 Query: 195 TDDRFERVRVR 205 D + R R+R Sbjct: 258 IDPAYTRSRLR 268 >gi|331084861|ref|ZP_08333949.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410955|gb|EGG90377.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 244 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F K + SAI+VD E + + +C+ Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYEEF---HLEPIEKLCA 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L + + +V + ++ + + R +++ K + + AH DD + Sbjct: 79 QLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + D+ F + ++ + Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKYDLPVVKSK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + VR ++ Sbjct: 195 CPVDGHTKRQYAKELVRQLN 214 >gi|317182435|dbj|BAJ60219.1| hypothetical protein HPF57_1145 [Helicobacter pylori F57] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|154483514|ref|ZP_02025962.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC 27560] gi|149735424|gb|EDM51310.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC 27560] Length = 234 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 14/197 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL AL+ + + F KF +++ L +D + + C+ + Sbjct: 26 IAVGISGGKDSLTLLYALNGL---KRFYPKKFDVVAITVDLDFGIQDFSK-IEKYCNDMD 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + VV + N + ++ + + R +++ AK+I I AH DD +ET+ Sbjct: 82 IEYYVVKTEIANVVFNERQESNPCSLCAKMRKGALNDFAKSIGCNKIAYAHHKDDMIETM 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ Y + S + T L + L + RP + D+ F + + + Sbjct: 142 FLSLI--YEGRFHCFSPV--TYLDKMELTVIRPLMYVPEADVIGFTNKYELPVAKSKCPV 197 Query: 196 DDRFERVRVRRFVRDID 212 D +R V+ V+ ++ Sbjct: 198 DGHTKREYVKNIVKQLN 214 >gi|332673982|gb|AEE70799.1| PP-loop family protein [Helicobacter pylori 83] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H +V + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|208435075|ref|YP_002266741.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27] gi|254779731|ref|YP_003057837.1| putative PP-loop family ATPase [Helicobacter pylori B38] gi|208433004|gb|ACI27875.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27] gi|254001643|emb|CAX29794.1| Putative PP-loop family ATPase [Helicobacter pylori B38] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242 >gi|15645796|ref|NP_207973.1| hypothetical protein HP1182 [Helicobacter pylori 26695] gi|108563546|ref|YP_627862.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1] gi|217033027|ref|ZP_03438497.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128] gi|298735806|ref|YP_003728331.1| hypothetical protein HPB8_310 [Helicobacter pylori B8] gi|2314342|gb|AAD08228.1| conserved hypothetical protein [Helicobacter pylori 26695] gi|107837319|gb|ABF85188.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1] gi|216945254|gb|EEC23934.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128] gi|298354995|emb|CBI65867.1| conserved hypothetical protein [Helicobacter pylori B8] gi|317009796|gb|ADU80376.1| hypothetical protein HPIN_05900 [Helicobacter pylori India7] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242 >gi|210135340|ref|YP_002301779.1| PP-loop family protein [Helicobacter pylori P12] gi|210133308|gb|ACJ08299.1| PP-loop family protein [Helicobacter pylori P12] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242 >gi|18313243|ref|NP_559910.1| hypothetical protein PAE2295 [Pyrobaculum aerophilum str. IM2] gi|18160762|gb|AAL64092.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 324 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---- 60 +E++R L+ P ++ +AVSGG DS+ LL L + + G +K A +++ Sbjct: 37 VETIR--SEKLIVPGDYVAIAVSGGKDSLVLLYILGRLKERGTLGGVKMEAFTINEGHPY 94 Query: 61 -CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 C ++ + YV D+ S+ I ++V +K+ T + + R A+ A H TI+ Sbjct: 95 SCFYRMSRRD--YVRDLASKFGIEYNVYHFKDIFGVTAMELSERLAK-AGHEVHMCTIDG 151 Query: 120 TL----------------IMTAHTFDDQLETV 135 L I TAH DD+ +TV Sbjct: 152 VLRRRAMNIIGKARGWTKIATAHNLDDEAQTV 183 >gi|218883803|ref|YP_002428185.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] gi|218765419|gb|ACL10818.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] Length = 339 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 17/139 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L HI+VAVSGG DS+ LL LH + R + +A+ VD ++ + V + Sbjct: 43 RMLGKNEHIIVAVSGGKDSIALLHVLHKL--SRKMPGWRVTAVLVDEGIKGYREKTVENL 100 Query: 74 SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYA-----------LISEHAKTIN 118 ++ ++ + +VS+K S + AR Y ++++ A+ + Sbjct: 101 VAYAAKNKVDYHIVSFKEYIGASLDEIVEKGRARGLPYLPCSYCGVFRRYVLNKAARRLG 160 Query: 119 ATLIMTAHTFDDQLETVYM 137 T+I TAH DD ++T M Sbjct: 161 GTVIATAHNLDDVIQTFLM 179 >gi|317012963|gb|ADU83571.1| hypothetical protein HPLT_05905 [Helicobacter pylori Lithuania75] Length = 253 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPASDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242 >gi|268610850|ref|ZP_06144577.1| PP-loop domain-containing protein [Ruminococcus flavefaciens FD-1] Length = 248 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 18/215 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DSM +L L + R F I + + +++D C K + +SD C+ Sbjct: 24 ICVGVSGGKDSMVMLYGLALL---RRFIGINYDIAGLTLDPCF-GGVKGDYSAISDFCAE 79 Query: 80 LRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I + VV + K AR R AL +E K + I H +DD + Sbjct: 80 HDIEYHVVETQIGEIVFDVRKEPNPCSLCARMRRGALHNE-TKKLGCNKIALGHNYDDAV 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M + E +G + L + + RP + + IRS L+ + + Sbjct: 139 ETFIMNL---FTEGRIGCFAPTN-YLSRKEITLIRPLVFAPEKAIRSAALRNQLPIVKSV 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R R + F+ +++ K + F +R Sbjct: 195 CPADGHTNRQRTKEFLEEMERKDKGFKDRIFGAMR 229 >gi|307637856|gb|ADN80306.1| tRNA-Cytosine32--2-thiocytidine synthetase [Helicobacter pylori 908] gi|317011386|gb|ADU85133.1| hypothetical protein HPSA_05805 [Helicobacter pylori SouthAfrica7] gi|325996453|gb|ADZ51858.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori 2018] gi|325998042|gb|ADZ50250.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori 2017] Length = 253 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis K5] gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis K5] Length = 535 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 21/195 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I +A SGG DS+ L AL L + G++ F + V+H L+ + +V++ Sbjct: 43 IWLACSGGRDSLAL-AALCVQLYQQ--GRLPFLPQLLHVNHGLQADSAIWAAHVANWAKA 99 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I +++ + AAR+ARY ++ A+ +++ AH DDQ ETV MR Sbjct: 100 QKIPCTIL---QAHVNGHDEQAARQARYDVM--RAQLNQDDVLLLAHHADDQAETVLMR- 153 Query: 140 QRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +G G++G+ + + + + RP+L +R I S+ + + + +DP+ Sbjct: 154 ----LIQGAGVNGLSGMHPWRVQTQDAHRIIVWRPWLIVQRASISSYAKRLKLPYIDDPT 209 Query: 194 NTDDRFERVRVRRFV 208 N R +RR + Sbjct: 210 NDGGDNVRSGLRRDI 224 >gi|284098925|ref|ZP_06385979.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3] gi|283830413|gb|EFC34619.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3] Length = 158 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + HT DDQ ETV + R G GL+G+ + + RPFL+ R +I Sbjct: 12 GAAKVAVGHTQDDQAETVLLSMMR-----GSGLAGLSG-MPARREPCVIRPFLQVSRSEI 65 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +L +R+ + D SN + ++ R R+RR V Sbjct: 66 LQYLDERHCGFRVDSSNENPKYARNRLRREV 96 >gi|158334883|ref|YP_001516055.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017] gi|158305124|gb|ABW26741.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017] Length = 338 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG DS LL L + + + + DH + +V+ + + + Sbjct: 30 ILIALSGGQDSFCLLQLLVDLQPKWGW---QLAIAHGDHRWPLDSDANAHHVTQIARQYQ 86 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + + + AA R+ RY +++E A+ L+++AHT D+ ET+ R Sbjct: 87 LPYFL---RQATTELRSEAAGRQWRYQILTEIAEQEAYPLVVSAHTASDRAETLLYNLIR 143 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + L RP L R F RN+ +D N + + R Sbjct: 144 GSGTDGLQALSWQRPLSDRVQL--VRPLLDVARAQTGDFCRHRNLPIWQDAMNQNLVYRR 201 Query: 202 VRVR 205 R+R Sbjct: 202 NRIR 205 >gi|317014572|gb|ADU82008.1| hypothetical protein HPGAM_06125 [Helicobacter pylori Gambia94/24] Length = 253 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|308183288|ref|YP_003927415.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4] gi|308065473|gb|ADO07365.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4] Length = 253 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQS 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|61217183|sp|Q5N517|TILS_SYNP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 325 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 8/184 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DS+ L+ L + + + DH R + ++ + + + Sbjct: 29 LLLAVSGGQDSLALVQLLRGL---QPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQ 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + ++ +P AAAR RY ++ A I+A L++T HT D+ ET+ R Sbjct: 86 LPFYCQ--RSPEPPRS-EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTR 142 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ S L D L + RPFL R + + Q + ED +N D RF R Sbjct: 143 GSHLQGLA-SLRWQRSLSD-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFAR 200 Query: 202 VRVR 205 R+R Sbjct: 201 NRLR 204 >gi|311107714|ref|YP_003980567.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8] gi|310762403|gb|ADP17852.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8] Length = 354 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I VA+SGG+DS ++A+H+ R G ++ V H L++ A ++V + Sbjct: 42 PPRIAVALSGGADSA--MLAVHAAALVRELG-MELMLFHVHHGLQDAADAWTQHVRTLAD 98 Query: 79 RLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + SV + ++ G+ AAAR+ARYA +++ A+ T I+ AH +DQ ETV + Sbjct: 99 LLALPLSVARVEVAQAAGKGIEAAARDARYAALAQLAREQGVTHILLAHHRNDQAETVLL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI--RSFLLQRNISW--CEDPS 193 R R GM + M D L++ RP+L R+ I + + W +DP+ Sbjct: 159 RLLRGTGLAGM--AAMAPVSRRDGLLYL-RPWLEVDRDAILHAADAVAAATGWRPVQDPT 215 Query: 194 NTDDRFERVRVRRFV 208 N D + R +R + Sbjct: 216 NADPHYTRAALRELL 230 >gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] gi|118571484|gb|ABL06235.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] Length = 323 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 29/192 (15%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76 + +SGG DS+ L A+ + L +A+ VDH L+ ETA+ + VS Sbjct: 30 IGLSGGPDSLAL-TAVAARLR-------PTTALIVDHGLQPDSAAVSETARAQA--VSLG 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C R+ V + GL AAAR ARY + H ++ AHT DDQ ETV Sbjct: 80 CVTARVLRVQVG-NPAGAGGGLEAAARTARYGALDAHRDGP----VLLAHTLDDQAETVL 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G + +D W RP L RR + ++ +DP N+D Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRGVTHDACRELGLTAWQDPHNSD 187 Query: 197 DRFERVRVRRFV 208 RF R R+R V Sbjct: 188 RRFTRTRLRAEV 199 >gi|291563476|emb|CBL42292.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SS3/4] Length = 261 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 16/211 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI V VSGG DS+ LL ALH + R + K A +VD + + C Sbjct: 25 HIAVGVSGGKDSLALLYALHEL--QRFYPKHFTLHAFTVDLGF---GIQDFSGIKAFCDG 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ +++ + ++ ++ A + R ++ AK I AH DD +E Sbjct: 80 FQVPLTIIPTEIGKIVFETRKESNPCALCAKMRKGALNLEAKAAGCNKIAYAHHKDDIIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + + G + T L L + RP + D+ F + N+ C++P Sbjct: 140 TMLLSLMFE----GRFYTFPPKTFLDRTELTVIRPLMYVSEADVIGFKNKYNLPVCKNPC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 D +R V+ ++ +K + F Sbjct: 196 PADGHTKREYVKNLTSQLNKENPGIKERLFH 226 >gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycobacterium marinum M] gi|183178419|gb|ACC43529.1| cell cycle protein MesJ [Mycobacterium marinum M] Length = 323 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 29/192 (15%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76 + +SGG DS+ L A+ + L +A+ VDH L+ ETA+ + VS Sbjct: 30 IGLSGGPDSLAL-TAVAARLR-------PTTALIVDHGLQPDSAAVSETAR--AQAVSLG 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C R+ V + GL AAAR ARY + H ++ AHT DDQ ETV Sbjct: 80 CVAARVLRVQVG-NPAGAGGGLEAAARTARYGALDAHRDGP----VLLAHTLDDQAETVL 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G + +D W RP L RR + ++ +DP N+D Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRGVTHDACRELGLTAWQDPHNSD 187 Query: 197 DRFERVRVRRFV 208 RF R R+R V Sbjct: 188 RRFTRTRLRAEV 199 >gi|300114179|ref|YP_003760754.1| PP-loop domain-containing protein [Nitrosococcus watsonii C-113] gi|299540116|gb|ADJ28433.1| PP-loop domain protein [Nitrosococcus watsonii C-113] Length = 294 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS LL L LS + IKF I+V+ ++ E RY+ + Sbjct: 41 LMVCLSGGKDSYALLDIL---LSLQQHAPIKFDLIAVNLDQKQPGFPEHVLPRYLESLGV 97 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI +SVV + +T +R R ++ A+ + AT I H DD LET Sbjct: 98 PYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEALGATKIALGHHRDDILET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ++ KGM + D D + RP CR +D+ S+ +N Sbjct: 157 FFLNMFHGGTLKGMPPKLLSD----DGKHMVIRPLAYCREKDLASYAQLKN 203 >gi|217034263|ref|ZP_03439681.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10] gi|216943323|gb|EEC22785.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10] gi|261838507|gb|ACX98273.1| hypothetical protein KHP_1079 [Helicobacter pylori 51] gi|261839907|gb|ACX99672.1| hypothetical protein HPKB_1114 [Helicobacter pylori 52] gi|297380364|gb|ADI35251.1| Hypothetical protein HPV225_1210 [Helicobacter pylori v225d] Length = 253 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40] Length = 1612 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 45/221 (20%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P + +AVSGG+DSM L L I +A VDH RE + E VS Sbjct: 1033 FPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVSQWL 1091 Query: 78 SRLRIAHSV--VSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + ++W S T AR R+ + + + ++ H DD Sbjct: 1092 QDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHHQDDT 1151 Query: 132 LETVYMRSQRDYAEKGMGLSGM--------C----------------------------D 155 +ET R KG GL+G+ C D Sbjct: 1152 VETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQARND 1209 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 T + + I RP L + + + + NI + DP+N D Sbjct: 1210 TTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFD 1250 >gi|220932926|ref|YP_002509834.1| PP-loop domain protein [Halothermothrix orenii H 168] gi|219994236|gb|ACL70839.1| PP-loop domain protein [Halothermothrix orenii H 168] Length = 260 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 19/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +ILV +SGG DS LL L ++++ + + +A++VD + K+ Y+ + C RL Sbjct: 28 NILVGLSGGKDSSFLLYVL-ALINRYASLDFRLAALTVDLGF-DGGKNYFDYLKNYCDRL 85 Query: 81 ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 IA ++S K KP A R I + K I H +DD Sbjct: 86 GVKYYVLETEIASYILSEKTEKP----CARCAHFRKGAIVDFMKENGFNKIAYGHHYDDA 141 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET M YA G + + T L +++ RP + R +I + + E Sbjct: 142 VETFLMSIL--YA--GQVKTFLPKTYLSRNEVYVIRPLVYLRESEIIRARKYMDYNPPES 197 Query: 192 PSNTDDRFERVRVRRFVRDI 211 P D + R +V++ +R++ Sbjct: 198 PCPYDGQTTRDKVKKLLREL 217 >gi|73670143|ref|YP_306158.1| hypothetical protein Mbar_A2672 [Methanosarcina barkeri str. Fusaro] gi|72397305|gb|AAZ71578.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 302 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 13/136 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L +H +L +R I+ AISVD + + + L Sbjct: 52 IAVALSGGKDSSVALYIVHKILGNRP--DIEIVAISVDEGINGYRPHSLEVAKSLTKMLG 109 Query: 82 IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130 + H + S+K T L A RE R +++ A I AT ++T H DD Sbjct: 110 VRHIIKSFKEVHGVTMDELAAMDREKGACSYCGVLRKNILNRTALEIGATKLVTGHNLDD 169 Query: 131 QLETVYMRSQRDYAEK 146 + +T+ + R E+ Sbjct: 170 EAQTILLNHLRGDVER 185 >gi|228470511|ref|ZP_04055378.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3] gi|228307807|gb|EEK16763.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3] Length = 494 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 37/227 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +++A+SGG+DS LL L S+L R HC LR E+ +DE +V+++ Sbjct: 34 VIIALSGGADSTALLWGL-SLLGYRCVAA---------HCNFHLRDDESDRDEA-FVTEL 82 Query: 77 CSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C++L R + + + + AARE RY E + +A I H +D Sbjct: 83 CAQLGVPLERASFDTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQCIALGHHLEDN 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E + + +G G+ G+ + RP + I FL + D Sbjct: 143 VEQLMIN-----LSQGAGVRGLRGMLPMREEGKYIRPLIDTPPRLIYDFLQTAEQPFVTD 197 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +N D R VR +R + F L + AVA I Sbjct: 198 STNADTTIRRNFVRHTLRPL-----------FDQLNPSFDQAVASTI 233 >gi|167619503|ref|ZP_02388134.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis Bt4] gi|257138682|ref|ZP_05586944.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] Length = 482 Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS + LH+ G + A+ V H L A + + ++ Sbjct: 16 APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 70 Query: 80 L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L R + V + Q G+ A+AR+ RY + A + A DDQ ETV + Sbjct: 71 LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 129 Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + R G G++G+ L D+ RP L R + + Q + W +D Sbjct: 130 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 182 Query: 192 PSNTDDRFERVRVR 205 SN D R+ R +R Sbjct: 183 ESNADTRYARNALR 196 >gi|188527970|ref|YP_001910657.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470] gi|188144210|gb|ACD48627.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470] gi|308063965|gb|ADO05852.1| hypothetical protein HPSAT_05705 [Helicobacter pylori Sat464] gi|317177929|dbj|BAJ55718.1| hypothetical protein HPF16_1121 [Helicobacter pylori F16] gi|317180912|dbj|BAJ58698.1| hypothetical protein HPF32_1116 [Helicobacter pylori F32] Length = 253 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|257093683|ref|YP_003167324.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046207|gb|ACV35395.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 468 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 9/199 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + V +SGG DS+ LL AL + G + +AI VDH L A Sbjct: 28 FLAARLAPGERLCVGLSGGRDSVVLLHALDGLRVRGLVGAL--AAIHVDHGLSANAGTWA 85 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + ++ C +L + +V + + G+ AAAR AR+ + + A + AH D Sbjct: 86 GFCTEFCRQLGVPLDIVHVEVPRDDGEGIEAAARRARHRVFA----GCCADWLALAHHQD 141 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV R R G +GM + RP L R I + + ++ W Sbjct: 142 DQAETVLFRLLRGAGVAGA--AGMPAERSQAGGPRLIRPLLDVPRTLIAGYAAENSLVWV 199 Query: 190 EDPSNTDDRFERVRVRRFV 208 ED SN D R+ R +R+ V Sbjct: 200 EDESNADCRYRRSHLRQAV 218 >gi|34558077|ref|NP_907892.1| hypothetical protein WS1770 [Wolinella succinogenes DSM 1740] gi|61217316|sp|Q7MR31|TILS_WOLSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34483795|emb|CAE10792.1| conserved hypothetical protein-Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Wolinella succinogenes] Length = 326 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DS L +L +R +I F V++ R AK+E Y ++ R Sbjct: 19 LLGFSGGVDSTALFF----LLLER---EIPFDIALVNYHQRAQAKEEESYAKELAHR--- 68 Query: 83 AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-S 139 H + S P + AR RY ++ AH D+LE + MR + Sbjct: 69 -HQKRCFTLSCPLGPSNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRLA 127 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 Q +G S + Y+L RP +E + +L Q I + ED SN D + Sbjct: 128 QGSSLSTLLGFSSREIRLGYEL----IRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183 Query: 200 ERVRVR 205 R R R Sbjct: 184 LRNRFR 189 >gi|308184928|ref|YP_003929061.1| putative PP-loop family ATPase [Helicobacter pylori SJM180] gi|308060848|gb|ADO02744.1| putative PP-loop family ATPase [Helicobacter pylori SJM180] Length = 253 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242 >gi|254491662|ref|ZP_05104841.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxidans DMS010] gi|224463140|gb|EEF79410.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxydans DMS010] Length = 441 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 9/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS + LH + + + AI VDH L + + + V + Sbjct: 21 VCIAYSGGVDSH---VLLHLLANTQHPQLTSIRAIYVDHGLHAESDKWRDHCASVSKSID 77 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I S+ + GL AAAR+ARY S + +++TA DQ ET+ ++ Sbjct: 78 IKFESLTVTVENIDNLGLEAAARQARYQAFS--SALFENEVLVTAQHQQDQAETLMLQLL 135 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ G T+ + I RP L + DI + +SW EDPSN D Sbjct: 136 RGSGPSGLSAMGRESTMK---GMTILRPLLGLSKADILDYAQLHQLSWIEDPSNADLTLN 192 Query: 201 RVRVRRFV 208 R +R V Sbjct: 193 RNYLRHQV 200 >gi|253681114|ref|ZP_04861917.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str. 1873] gi|253562963|gb|EES92409.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str. 1873] Length = 239 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 15/177 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL L++ + F F I++ L A + + +C L Sbjct: 24 IAVGLSGGKDSITLLYLLNAY---KRFSPEPFELIAI--TLDPGAGADFTEMIRICKELN 78 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + + + + ++ + R +++HAK + I H +D +ET+ Sbjct: 79 VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKNDAIETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M +G + + DT L ++ I RP + + I+SF+ NIS E+P Sbjct: 139 LM----SMFYEGRINTFLPDTYLSRADIHIIRPMVYIDEQSIKSFINNSNISIVENP 191 >gi|149280296|ref|ZP_01886418.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39] gi|149228985|gb|EDM34382.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39] Length = 461 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 27/193 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 IL+AVSGG DS +L+A S FG + HC LR E+ +DE +V + Sbjct: 23 ILLAVSGGKDS--VLMAHLFKASGHPFG--------IAHCNFNLRGEESVRDE-HFVKML 71 Query: 77 CSRLRIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + V + K Q G+ AAR RY + +I A DD + Sbjct: 72 GLMLDVPVYVTHFDTKAYAKQHGVSTQMAARTLRYEWFEQLRIERGYQVIALAQHQDDAM 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R G G+SG+ NL RP + R++I ++ ++ + ED Sbjct: 132 ETVLLNLTR-----GTGISGLHGIFPRRGNLI--RPLMFLSRQEIDDLVVAHHLDFVEDS 184 Query: 193 SNTDDRFERVRVR 205 SN + R ++R Sbjct: 185 SNLSSNYIRNKIR 197 >gi|255311017|ref|ZP_05353587.1| hypothetical protein Ctra62_01120 [Chlamydia trachomatis 6276] gi|255317318|ref|ZP_05358564.1| hypothetical protein Ctra6_01115 [Chlamydia trachomatis 6276s] gi|255506792|ref|ZP_05382431.1| hypothetical protein CtraD_01130 [Chlamydia trachomatis D(s)2923] gi|297748347|gb|ADI50893.1| TtcA [Chlamydia trachomatis D-EC] gi|297749227|gb|ADI51905.1| TtcA [Chlamydia trachomatis D-LC] Length = 283 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 66 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 124 Query: 82 IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138 + + ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 125 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 181 Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + D + + + I RP + + IR F Sbjct: 182 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 218 >gi|291087307|ref|ZP_06571896.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1] gi|291075292|gb|EFE12656.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1] Length = 482 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 30/202 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 ++V +SGG+DS+ LL S+L+D RS I+ A+ V H LR + A + + ++C + Sbjct: 39 VVVGLSGGADSVCLL----SLLTDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 94 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA-------------KTINATL---IM 123 L I ++ +N+ + + E L+ A + A L I Sbjct: 95 LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEEEEREQEGAALPVRIA 153 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DD ET+ + +G GL G+ + + + RP L R++I +L + Sbjct: 154 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 206 Query: 184 RNISWCEDPSNTDDRFERVRVR 205 +S+ D +N + + R R+R Sbjct: 207 EGLSYVTDSTNLLNDYTRNRLR 228 >gi|289525255|emb|CBJ14731.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296434803|gb|ADH16981.1| hypothetical protein E150_01125 [Chlamydia trachomatis E/150] gi|296435732|gb|ADH17906.1| hypothetical protein G9768_01115 [Chlamydia trachomatis G/9768] gi|296436656|gb|ADH18826.1| hypothetical protein G11222_01110 [Chlamydia trachomatis G/11222] gi|296437592|gb|ADH19753.1| hypothetical protein G11074_01115 [Chlamydia trachomatis G/11074] gi|296438523|gb|ADH20676.1| hypothetical protein E11023_01115 [Chlamydia trachomatis E/11023] gi|297140091|gb|ADH96849.1| hypothetical protein CTG9301_01115 [Chlamydia trachomatis G/9301] Length = 254 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 37 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95 Query: 82 IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138 + + ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 96 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152 Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + D + + + I RP + + IR F Sbjct: 153 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 189 >gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobacterium kansasii ATCC 12478] Length = 353 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G G + YD W RP L RR+ ++ Sbjct: 146 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPYDPP-WC-RPLLGVRRDVTQAAC 198 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ +DP NTD RF R R+R+ V Sbjct: 199 RELGLTAWQDPHNTDRRFTRTRLRQEV 225 >gi|150398931|ref|YP_001322698.1| PP-loop domain-containing protein [Methanococcus vannielii SB] gi|150011634|gb|ABR54086.1| PP-loop domain protein [Methanococcus vannielii SB] Length = 323 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 40/203 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEVRYVSD 75 ++V +SGG DS+ LL L R +G ++ AI+VD + ET K+ V+ +S Sbjct: 78 VVVGLSGGKDSLALLHLLEPY--KRKYG-VEIHAITVDLNIDGIRPWNETNKN-VKMISK 133 Query: 76 VCSRLRIAHSVVSW------------KNSK--PQTGLMAAAREARYALISEHAKTINATL 121 C L I H ++ + KNSK + + + R+ L + +T N Sbjct: 134 TCENLNIPHKIIPYDENVVEMSKILSKNSKGIDYSPCFSCSISRRHILTNYAKETFNCEN 193 Query: 122 IMTA--HTFDDQLETVY-----------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A HT +D +T+ + +++ E + G+ ++ N + RP Sbjct: 194 VKIALGHTLEDNSDTIIANILKGNIIKALEPIKNFDETKIDFDGLKVSL---KNCCMIRP 250 Query: 169 FLRCRREDIRSFLLQRNISWCED 191 L E I+ L + NI + +D Sbjct: 251 LLNISEEKIKKALNECNIEYYKD 273 >gi|116748705|ref|YP_845392.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB] gi|116697769|gb|ABK16957.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 H+LVAVSGG DS+ LL L + G+I S + +H LR D + +V V + Sbjct: 24 HVLVAVSGGPDSIALLHLLAHQRESLAIGRI--SVLHFNHRLRGAESDADCVFVRSVAEK 81 Query: 80 LRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + V ++ + + MAA +A I HT +DQ E Sbjct: 82 MGLPVVCGEEDVRRYRQGRTISMEMAARERRHRFFRRS-LDQYSAQRIALGHTSNDQAEE 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V +R R G+G SGM + RP L R +I +L I + ED SN Sbjct: 141 VLLRLLR-----GVGPSGMEGMRPLGPG-GVIRPLLFAGRAEILEYLHDLKIPFREDSSN 194 Query: 195 TD 196 + Sbjct: 195 LE 196 >gi|255348575|ref|ZP_05380582.1| hypothetical protein Ctra70_01145 [Chlamydia trachomatis 70] gi|255503115|ref|ZP_05381505.1| hypothetical protein Ctra7_01155 [Chlamydia trachomatis 70s] Length = 283 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 66 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 124 Query: 82 IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 125 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 181 Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180 AE +GM + + + + I RP + + IR F Sbjct: 182 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 218 >gi|83720432|ref|YP_442474.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] gi|83654257|gb|ABC38320.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] Length = 494 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS + LH+ G + A+ V H L A + + ++ Sbjct: 28 APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 82 Query: 80 L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L R + V + Q G+ A+AR+ RY + A + A DDQ ETV + Sbjct: 83 LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 141 Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + R G G++G+ L D+ RP L R + + Q + W +D Sbjct: 142 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 194 Query: 192 PSNTDDRFERVRVR 205 SN D R+ R +R Sbjct: 195 ESNADTRYARNALR 208 >gi|227547905|ref|ZP_03977954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium lipophiloflavum DSM 44291] gi|227080010|gb|EEI17973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium lipophiloflavum DSM 44291] Length = 300 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 24/192 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R +R+L PA ++ +SGG+DS+ L+ A + D A+ VDH L+E + Sbjct: 14 ACRRSLRALHGPA--VIGLSGGADSLALVAAAAAEDKD-------VRAMIVDHQLQEGSD 64 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 R ++ + + SV++ N+ AA AL+S + AHT Sbjct: 65 QVARCAAEQANAWGVKASVIA-VNAGGDNLEAAAREARYAALLSFGVD------VWVAHT 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R GM G D I RPFL RR D R + ++ Sbjct: 118 ADDQAETLLLGALRGNP-SGMAARGGIDNR-------ILRPFLGIRRADTRGACAELGVT 169 Query: 188 WCEDPSNTDDRF 199 EDP N D+ + Sbjct: 170 PWEDPMNVDENY 181 >gi|317500413|ref|ZP_07958637.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331089580|ref|ZP_08338479.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898168|gb|EFV20215.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330404948|gb|EGG84486.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium 3_1_46FAA] Length = 244 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F KF SA++VD A + + ++C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPRKFDLSAVTVDLGF---ADFNLEPIQNLCR 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V N + ++ + + R ++E K + + AH DD + Sbjct: 79 ELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + ++ F + ++ + Sbjct: 139 ETMLL----SLIFEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVVKGK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + +R+++ Sbjct: 195 CPVDGHTKRQYAKELLRELN 214 >gi|288932186|ref|YP_003436246.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] gi|288894434|gb|ADC65971.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] Length = 302 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 18/129 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS+ L L + R ++F AI++D + V VC L Sbjct: 50 IALAMSGGKDSVTLAHTLIELYGKRR--DLEFFAITIDEGIEGYRPPTVEIAKKVCRDLG 107 Query: 82 IAHSVVSWKNSKPQTGL------MAAAREA-------RYALISEHAKTINATLIMTAHTF 128 I H VVS++ + GL +R A R L++ A+ + AT + T H Sbjct: 108 IEHVVVSFRE---EIGLDLDEMVERGSRNACTYCGVFRKYLLNRTARELGATKLATGHNL 164 Query: 129 DDQLETVYM 137 DD+ +T+ + Sbjct: 165 DDETQTILL 173 >gi|153814901|ref|ZP_01967569.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756] gi|145847932|gb|EDK24850.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756] Length = 250 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 14/125 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F KF SA++VD A + + ++C Sbjct: 31 HIAVGISGGKDSLTLLYALHGL---KRFYPRKFDLSAVTVDLGF---ADFNLEPIQNLCR 84 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V N + ++ + + R ++E K + + AH DD + Sbjct: 85 ELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 144 Query: 133 ETVYM 137 ET+ + Sbjct: 145 ETMLL 149 >gi|166154427|ref|YP_001654545.1| hypothetical protein CTL0469 [Chlamydia trachomatis 434/Bu] gi|166155302|ref|YP_001653557.1| hypothetical protein CTLon_0464 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335686|ref|ZP_07223930.1| hypothetical protein CtraL_02630 [Chlamydia trachomatis L2tet1] gi|165930415|emb|CAP03908.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931290|emb|CAP06862.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 254 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 37 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95 Query: 82 IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + S+ S ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 96 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152 Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180 AE +GM + + + + I RP + + IR F Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 189 >gi|197303257|ref|ZP_03168298.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC 29176] gi|197297683|gb|EDY32242.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC 29176] Length = 238 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 22/201 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V VSGG DS+ LL A+ + R + K + SAI+ C + VSD C L Sbjct: 26 VAVGVSGGKDSLTLLYAMRQL--QRFYPKNFELSAIT---CNVGFEGMDFTGVSDFCDSL 80 Query: 81 RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + V K P+ + + R + + + I AH DD +ET Sbjct: 81 KIPYEQVDTKIAEIVFQENPEIRPCSLCAKLRKGAMYKQLAELGINKIAYAHNKDDFIET 140 Query: 135 VYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 M R YA M T+L + + + RP + + + +F++++ I ++ Sbjct: 141 ALMSLIYEGRFYAFPPM-------TVLPEAGVTVIRPMMYVPEKGVANFVVEQGIQIVKN 193 Query: 192 PSNTDDRFERVRVRRFVRDID 212 D +R R+ + I+ Sbjct: 194 ACPVDGSTKREYARQLMEQIN 214 >gi|225419721|ref|ZP_03762024.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme DSM 15981] gi|225041631|gb|EEG51877.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme DSM 15981] Length = 240 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 14/196 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + +SGG DS+ LL AL S L + AI+VD L D +R + C Sbjct: 26 VALGMSGGKDSLTLLYAL-SHLQKFYPKRFDLCAITVDLGLGNLELDPIRAL---CEEFA 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + VV + ++ ++ + + R ++ A + AH DD +ET Sbjct: 82 VPYEVVPTQIGKVLFETRKESNPCSLCAKMRKGALNNKALEFGCNKVAYAHHRDDLIETA 141 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M +G + T L L + RP L ++ F + ++ C++P Sbjct: 142 LM----SLIYEGHFYAFSPRTKLDRTGLTVIRPLLYASEAEVVGFKNKYHLPVCKNPCPM 197 Query: 196 DDRFERVRVRRFVRDI 211 D +R V+ +RD+ Sbjct: 198 DGHTKREYVKNLIRDL 213 >gi|15604937|ref|NP_219721.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|3328625|gb|AAC67809.1| PP-Loop Superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] Length = 234 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 17 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 75 Query: 82 IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138 + S+ S ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 76 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 132 Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + ++A G+ + D + + + I RP + + IR F Sbjct: 133 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 169 >gi|88854794|ref|ZP_01129460.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1] gi|88815955|gb|EAR25811.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1] Length = 340 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 22/193 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA+SGG DS L + + S ++ A+ V+H L++ + D + L Sbjct: 37 VLVALSGGPDS---LALAAATAFEASKAGMRAGAVIVNHNLQDGSADVAAAAARQARDLG 93 Query: 82 IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + S++ P++ AAR+ARYA ++E A A ++ HT DDQ ETV + Sbjct: 94 LDPVDIRSILVGDAGGPES----AARDARYAALAEAAAEYGAIRVLLGHTLDDQAETVLL 149 Query: 138 RSQRDYAEKGMG-LSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G G L GM DT Y RP L RE I DP N Sbjct: 150 GLARG---SGAGSLKGMAVDTGEY------LRPLLAVARETTVQCCEDSGIVAWNDPHNL 200 Query: 196 DDRFERVRVRRFV 208 D + RVRVR+ V Sbjct: 201 DTSYTRVRVRQTV 213 >gi|15612173|ref|NP_223825.1| hypothetical protein jhp1108 [Helicobacter pylori J99] gi|4155705|gb|AAD06688.1| putative [Helicobacter pylori J99] Length = 253 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALGEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIRVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|166363410|ref|YP_001655683.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843] gi|166085783|dbj|BAG00491.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843] Length = 324 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 13/189 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVC 77 A +LVA+S G DS+ L L + S + +++ HC + D V +V + Sbjct: 26 ASLLVALSAGQDSLCLGQLLLDLRSRWGW------QLAIAHCDHRWSSDRGLVTHVRKIA 79 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + + + P A AR+ RY + A+ ++TAHT D+ ET Sbjct: 80 EIWQLPVYITT---APPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETFLY 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ ++ D +++ RP L R + +F R + D +N + Sbjct: 137 NLTRGAGSDGLSALTWLTSLTSD--IFLVRPLLNVTRGETFAFCQSRELPIWYDRANENL 194 Query: 198 RFERVRVRR 206 R+ R R+R+ Sbjct: 195 RYARNRIRQ 203 >gi|76788939|ref|YP_328025.1| TtcA [Chlamydia trachomatis A/HAR-13] gi|237804562|ref|YP_002888716.1| hypothetical protein CTB_2111 [Chlamydia trachomatis B/TZ1A828/OT] gi|76167469|gb|AAX50477.1| TtcA [Chlamydia trachomatis A/HAR-13] gi|231272862|emb|CAX09772.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 254 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S +C +++ Sbjct: 37 IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95 Query: 82 IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + S+ S ++ P+ R L+ + AK + AT + H DD ++T M Sbjct: 96 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152 Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180 AE +GM + + + + I RP + + IR F Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 189 >gi|282879854|ref|ZP_06288581.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1] gi|281306248|gb|EFA98281.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1] Length = 448 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 21/189 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 LVA+SGG+DS+ LL L ++ + A+ LR E A ++ + D+C++L+ Sbjct: 25 LVALSGGADSVCLLRCLQAL-------GYRLEAVHCHFHLRAEEADRDLSFCQDLCAKLQ 77 Query: 82 IA-HSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I HS + Q+ + AAR+ RY+ + + +A + H +D +ET+ + Sbjct: 78 IPFHSTHFDTKTYAQSHGVSIEMAARDLRYSFFRKMVQARHAAAVCVGHHSEDSVETILL 137 Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ G+S I+ RP L R I +L ++ D +N Sbjct: 138 NLVRSTGIHGLTGISPKKGIIV--------RPLLCVNRLKIIDYLHSIQQNYVTDSTNFV 189 Query: 197 DRFERVRVR 205 +R ++R Sbjct: 190 ADVQRNQMR 198 >gi|239623968|ref|ZP_04666999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521999|gb|EEQ61865.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 241 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 16/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I V VSGG DS+ + R + K + A++VD L + VR ++C Sbjct: 26 IAVGVSGGKDSL--ALLYALHHLQRFYPRKYELCAVTVDLGLGNMDLEPVR---ELCGEF 80 Query: 81 RIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + ++V+ + K ++ + + R ++E K + I AH DD +ET Sbjct: 81 GVPYTVIPTEIGKVLFDIRKESNPCSLCAKMRKGALNEKVKELGCNKIAYAHHRDDVIET 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M +G S T L ++L + RPFL DI F + + C++P Sbjct: 141 MLM----SLFYEGRFYSFSPYTYLDRMDLTVIRPFLFVTEADIVGFKNKYQLPVCKNPCP 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLK 219 D +R ++ ++++ +LK Sbjct: 197 MDGYTKRQYIKDLIKELQKDNPHLK 221 >gi|261884707|ref|ZP_06008746.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 229 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 15/113 (13%) Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTI 157 R+ R+ E T N ++ AH +D LE ++M+ KG G +C +T Sbjct: 6 RDIRHKFFEEICITFNYDPLILAHQLNDCLEWLFMQ-----LSKGSGTVQLCGLEPTNTK 60 Query: 158 LYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + + + + RP + R +I S+L Q+NI++ D SN D +F+R +R Sbjct: 61 IAEFENIKKQISVIRPLINVSRNEIISYLKQKNINYFTDISNFDFKFKRNFIR 113 >gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] gi|315264560|gb|ADU01302.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] Length = 322 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G G + YDL W RP L RR+ Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPYDLP-W-GRPLLGVRRDTTHRAC 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ +DP N D R+ RVR+R V Sbjct: 169 AELGLNPWQDPHNLDPRYTRVRLRTEV 195 >gi|167758161|ref|ZP_02430288.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704] gi|167664058|gb|EDS08188.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704] Length = 263 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + R F K + SA++VD E V Y +C Sbjct: 44 HIAVGISGGKDSLTLLYALHGL---RRFYPKKFELSAVTVDLGYSECDFTPVVY---LCE 97 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + + ++ + + R +++ K + + AH DD + Sbjct: 98 ELGVPYKIVKTDIAHILFDERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 157 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + ++ F + ++ Sbjct: 158 ETMLL----SLIFEGRFYSFSPKTYLDRMDLTVIRPIMFVDEAEVIGFKQKYDLPVVTSR 213 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + V+ +D Sbjct: 214 CPIDGYTKRQYAKELVKQLD 233 >gi|207108367|ref|ZP_03242529.1| hypothetical protein HpylH_01795 [Helicobacter pylori HPKX_438_CA4C1] Length = 236 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 25/208 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLH 214 P++ R+ + F++++ +LH Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLH 226 >gi|315587072|gb|ADU41453.1| PP-loop family protein [Helicobacter pylori 35A] Length = 253 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNIQA 242 >gi|262196733|ref|YP_003267942.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365] gi|262080080|gb|ACY16049.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365] Length = 427 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 13/181 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---VDHCLRETAKDEVRYVSDVCS 78 I VA SGG DS L H+ L S + + ++ VDH LR + + V + Sbjct: 23 IGVACSGGPDSSALA---HACLRLASAERARIGPVTLLHVDHGLRPDSGADAAAVYALAE 79 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 A VV + + + L AAAR+AR+A + A+ + ++ AHT DQ ETV MR Sbjct: 80 PFGAAVHVVRAEVDRDRASLEAAARDARFAALDALAEQLGLRFVLLAHTASDQAETVLMR 139 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G+ G+ + RP L R DI ++ + + DP N D Sbjct: 140 VLR-----GTGVFGL--AAMQPRRGRYLRPLLGLERGDIEAYCARAGVVALADPMNRDPA 192 Query: 199 F 199 F Sbjct: 193 F 193 >gi|3929907|emb|CAA10333.1| hypothetical protein [Wolinella succinogenes] Length = 210 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DS L +L +R +I F V++ R AK+E Y ++ R Sbjct: 19 LLGFSGGVDSTALFF----LLLER---EIPFDIALVNYHQRAQAKEEESYAKELAHR--- 68 Query: 83 AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-S 139 H + S P + AR RY ++ AH D+LE + MR + Sbjct: 69 -HQKRCFTLSCPLGPSNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRLA 127 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 Q +G S + Y+L RP +E + +L Q I + ED SN D + Sbjct: 128 QGSSLSTLLGFSSREIRLGYEL----IRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183 Query: 200 ERVRVR 205 R R R Sbjct: 184 LRNRFR 189 >gi|167581389|ref|ZP_02374263.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis TXDOH] Length = 478 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS + LH+ G + A+ V H L A + + ++ Sbjct: 16 APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 70 Query: 80 L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L R + V + Q G+ A+AR+ RY + A + A DDQ ETV + Sbjct: 71 LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 129 Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + R G G++G+ L D+ RP L R + + Q + W +D Sbjct: 130 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 182 Query: 192 PSNTDDRFERVRVR 205 SN D R+ R +R Sbjct: 183 ESNADTRYARNALR 196 >gi|302835227|ref|XP_002949175.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f. nagariensis] gi|300265477|gb|EFJ49668.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f. nagariensis] Length = 409 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 47/311 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL H+++ R + + DH R + +V ++ ++ Sbjct: 25 VLVAVSGGQDSVCLL---HALVDLRPIWGWRLGVVHCDHGWRVDSAVNADFVRELAAQ-- 79 Query: 82 IAH-SVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 H + + + PQ + + AARE RY + ++ A +++T HT D+ ET+ + Sbjct: 80 --HLDLPCYVRAAPQGAVPSERAAREWRYRVFADVAFAHGYDVVVTGHTATDRAETMLLN 137 Query: 139 SQRDYAEKG---------MGLSGMCDTILY-----------DLNLWISRPFLRCRREDIR 178 R G +G D ++ + RP L R + Sbjct: 138 LLRGSGPDGLVALARSRPLGSYSPADPTCAPGGELDIPRARSRSVRLVRPLLEFSRSQTQ 197 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 F+ Q + + D +N + R R+R V LR N + + Sbjct: 198 EFVEQLALPYFHDTTNDCNDLRRNRLRNEV--------------LPALRAGFNPRLDQAL 243 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 ++L V + +++ ++ ++ Y R S+ G S+P S + ML L + Sbjct: 244 FRFLEVLDADLEYLTRVTEDLYDNVVSYEYRASS---GDHSSVPAQGSSDERMLKLHELR 300 Query: 299 RGCVSIGRVVI 309 R +++ R V+ Sbjct: 301 RLPLAMQRRVV 311 >gi|294155987|ref|YP_003560371.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145] gi|291600488|gb|ADE19984.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145] Length = 289 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 20/188 (10%) Query: 23 LVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+A+SGG DSM LL ++V+ A V++ RE + + + VSD C + Sbjct: 7 LIALSGGPDSMFLLNEYSKNNNVV-----------ACFVNYNQREDSCVDEQIVSDFCKK 55 Query: 80 LRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I + +V K + AR R+ + ++ AH DD LE+ Y++ Sbjct: 56 NNIILYKLVLNKIDYQKGNFQDWARTKRFDFFKDIYDKECCDALLIAHHKDDFLESYYLQ 115 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197 G+ T +Y ++ + +P L + ++ I F + NI + D SN D Sbjct: 116 KNSSRLRITYGMKQ--KTFIYGMH--VEKPLLFKYFKKQILEFNDKHNIPYAIDKSNFSD 171 Query: 198 RFERVRVR 205 +++R +R Sbjct: 172 KYQRNIIR 179 >gi|118443752|ref|YP_878987.1| hypothetical protein NT01CX_0521 [Clostridium novyi NT] gi|118134208|gb|ABK61252.1| conserved hypothetical protein [Clostridium novyi NT] Length = 239 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 15/177 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL L++ + F F I++ L A + + +C L Sbjct: 24 IAVGLSGGKDSITLLYLLNAY---KRFSPEPFELIAI--TLDPGAGADFSEMIRICKELN 78 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + K + + ++ + R +++HAK + + H +D +ET+ Sbjct: 79 VPYYLFKTKIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKNDAIETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M +G + DT L +L I RP + ++I++F+ NI E+P Sbjct: 139 LM----SMFYEGRINTFSPDTYLSRTDLHIIRPMIYIDEQNIKTFIKNSNIPIVENP 191 >gi|311740141|ref|ZP_07713973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium pseudogenitalium ATCC 33035] gi|311304696|gb|EFQ80767.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium pseudogenitalium ATCC 33035] Length = 219 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AHT DDQ ET+ + + R ++GM + + + RP L RR D Sbjct: 28 VAVAHTADDQAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGAC 80 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + +S DP N D F RV +RR V Sbjct: 81 AELGLSAWRDPQNADTNFRRVALRREV 107 >gi|308062463|gb|ADO04351.1| hypothetical protein HPCU_06025 [Helicobacter pylori Cuz20] Length = 253 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKDFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|161524379|ref|YP_001579391.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616] gi|189350866|ref|YP_001946494.1| cell cycle protein [Burkholderia multivorans ATCC 17616] gi|160341808|gb|ABX14894.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616] gi|189334888|dbj|BAG43958.1| cell cycle protein [Burkholderia multivorans ATCC 17616] Length = 468 Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 19/211 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS LL A + R G + A+ V H L A + + +R Sbjct: 28 ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCVALHVHHGLSANADAWAAHAREQAAR 82 Query: 80 LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L +A + + G+ A+ARE RYA + A + A DDQ ETV ++ Sbjct: 83 LGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWLAQHADDQAETVLLQ 142 Query: 139 SQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G G++G+ ++ RP LR R + + + +SW +D SN Sbjct: 143 LLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLERYAAEHALSWIDDESN 197 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 D R+ R +R V L AL + F+D Sbjct: 198 ADTRYARNALRIDV----LPALAVHFPGFRD 224 >gi|254284141|ref|ZP_04959109.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B] gi|219680344|gb|EED36693.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B] Length = 358 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYD 160 AREARY + A + AH DDQ+ETV R R +G+ G+ Sbjct: 14 AREARYRAFDDAVGQGEA--LFQAHHLDDQVETVLYRLLRGSGPRGLRGIPAERSLTRGK 71 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 + RP L R ++ +F +S+ +DPSN D RF+R +R V Sbjct: 72 ----VVRPLLDIGRLELLNFCRDARLSFVQDPSNDDFRFDRNYLRHAV 115 >gi|296242202|ref|YP_003649689.1| PP-loop domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094786|gb|ADG90737.1| PP-loop domain protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 17/139 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L HI+V VSGG DSM LL L + R + +A+ VD ++ ++ + + Sbjct: 43 RMLGEKEHIVVGVSGGKDSMSLLHILRKL--SRKNKNWRLTALLVDEGIKGYRENTIPAL 100 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTIN 118 R + + +VS+K+ T +++ RE R ++++ A+ + Sbjct: 101 KIYAERNMVEYKIVSFKDYLGLTLDEIVSTGREKGLPYLPCSYCGVFRRYVLNKAARELG 160 Query: 119 ATLIMTAHTFDDQLETVYM 137 T++ TAH DD ++T M Sbjct: 161 GTVLATAHNLDDIVQTYLM 179 >gi|221198379|ref|ZP_03571425.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M] gi|221208944|ref|ZP_03581941.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2] gi|221171227|gb|EEE03677.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2] gi|221182311|gb|EEE14712.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M] Length = 468 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 19/211 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS LL A + R G + A+ V H L A + + +R Sbjct: 28 ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCVALHVHHGLSANADAWAAHAREQAAR 82 Query: 80 LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L +A + + G+ A+ARE RYA + A + A DDQ ETV ++ Sbjct: 83 LGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWLAQHADDQAETVLLQ 142 Query: 139 SQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G G++G+ ++ RP LR R + + + +SW +D SN Sbjct: 143 LLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLERYAAEHALSWIDDESN 197 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 D R+ R +R V L AL + F+D Sbjct: 198 ADTRYARNALRIDV----LPALAVHFPGFRD 224 >gi|225010841|ref|ZP_03701309.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C] gi|225005049|gb|EEG43003.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C] Length = 442 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 21/204 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81 L+A SGG DS+ +L L S + F+ + LR A + ++V+++ L Sbjct: 22 LLACSGGVDSV-VLAHLCSQCG------LTFALAHCNFNLRGAASTADAQFVANLALELG 74 Query: 82 IAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + S+ + K + + AR RY + KT N ++TAH +D LET+ + Sbjct: 75 VPVFQTSFDTNAYIKKHKVSIQMGARTLRYNWFDKLIKTHNYQYLLTAHQREDALETMII 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G G+ G+ + + +I RP + + + +F + +I W ED SN Sbjct: 135 NLSR-----GTGIEGLLG--IPEKRDYIRRPLICFAKAALLAFANENHIQWREDSSNDST 187 Query: 198 RFERVRVRRFVRDI--DLHALYLK 219 + R ++R V + DLH L+ Sbjct: 188 DYLRNKIRHEVLPLMADLHPTALE 211 >gi|109947003|ref|YP_664231.1| hypothetical protein Hac_0396 [Helicobacter acinonychis str. Sheeba] gi|109714224|emb|CAJ99232.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 253 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K F A++V + L E +++++SD+C Sbjct: 29 VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCKDQG 83 Query: 82 IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + N K ++ + R + A + AH DD +E+ Sbjct: 84 IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191 +M ++ G L M + L + RP ++ R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPDCNC 198 Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|302870332|ref|YP_003838969.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC 27029] gi|302573191|gb|ADL49393.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC 27029] Length = 316 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 9/203 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L A V G+ + ++VDH L+ + Sbjct: 4 AVRRVLTGLPGGGPVLVACSGGADSLALAAATAFVAP--RLGR-QAGLVTVDHGLQAGSA 60 Query: 68 DEVRYVSD--VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + V+D L + + +P AA ALI+ A +A ++ Sbjct: 61 ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAA-AHRFDAVGVLLG 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT D+Q ETV + R + GLSGM + D + + RP L R + R+ Sbjct: 120 HTRDEQAETVLLALARGAGPR--GLSGMPERRDVD-GVPLLRPLLDVPRANTRAACEALG 176 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + DP N D + R RVR V Sbjct: 177 LDPWADPHNADPAYARARVRSDV 199 >gi|33596889|ref|NP_884532.1| hypothetical protein BPP2286 [Bordetella parapertussis 12822] gi|61216608|sp|Q7W859|TILS_BORPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33573590|emb|CAE37584.1| conserved hypothetical protein [Bordetella parapertussis] Length = 344 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ AAAR ARY ++ A+ I+ AH +DQ ETV +R R +GM + M Sbjct: 110 GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPL 167 Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205 D ++ RP+L R I + ++ W +DP+NTD R+ R VR Sbjct: 168 SERDGVAYL-RPWLDVDRAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 219 >gi|33600723|ref|NP_888283.1| hypothetical protein BB1738 [Bordetella bronchiseptica RB50] gi|61216609|sp|Q7WLK7|TILS_BORBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33568323|emb|CAE32235.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 344 Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 7/113 (6%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ AAAR ARY ++ A+ I+ AH +DQ ETV +R R +GM + M Sbjct: 110 GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPL 167 Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205 D ++ RP+L R I + ++ W +DP+NTD R+ R VR Sbjct: 168 SERDGVAYL-RPWLDVDRAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 219 >gi|88603458|ref|YP_503636.1| hypothetical protein Mhun_2212 [Methanospirillum hungatei JF-1] gi|88188920|gb|ABD41917.1| Protein of unknown function UPF0021 [Methanospirillum hungatei JF-1] Length = 309 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 40/196 (20%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 VR ++ + P + VA SGG DS LL L + S+ I A++VD + + Sbjct: 38 EVRRYLITKRLPKTLGVAFSGGKDSTALLKVLSEIRSEFPSSII---ALTVDEGIEGYRQ 94 Query: 68 DEVRYVSDVCSRLRIAHSVV----------------SWKNSKPQTGLMAAAREARYALIS 111 D +R ++ C LRI H ++ S +N+ G++ R A L Sbjct: 95 DTIRAATETCLTLRIPHEIIRFQDLYGHSLDHLVSGSERNACTICGIL--RRRALEVLAQ 152 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWIS--- 166 +H T+I T H DD +T M + +SG I Y+ + W + Sbjct: 153 KH----KITMIATGHNQDDHAQTTVMNA----------ISGDVRKIFTGYEPSSWYAQRI 198 Query: 167 RPFLRCRREDIRSFLL 182 +PF R +++ + L Sbjct: 199 KPFARVSEKEVTLYAL 214 >gi|134299184|ref|YP_001112680.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051884|gb|ABO49855.1| PP-loop domain protein [Desulfotomaculum reducens MI-1] Length = 252 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 42/245 (17%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVR 71 +L+ P ++V VSGG DS LL L S+ R K+ F A+ +D L +++ Sbjct: 21 NLIEPGDKVVVGVSGGKDSNSLLYCL-SLYHRRYLKKVPFELHAVHLDMGLGA----DLQ 75 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA---------RYALISEHAKTINATLI 122 + ++C RL I ++ K++ T L +E R + A + + Sbjct: 76 PMKELCQRLAIP---LTLKHTDIGTILFDIRKETNPCSLCANLRRGALHSAALELGFNKV 132 Query: 123 MTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AH DD +ET +M + + ++ K T L +L + RPF+ + Sbjct: 133 ALAHHLDDVMETFFMSLLFNGNMKTFSPK---------TYLDRTDLTLIRPFVYVTENQV 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ L NI +P + + +R ++ + + +++ D+R K ++ Sbjct: 184 KALLPLENIPVIHNPCPANKQTKREEIKNLINQLS--------EQYPDIRQKFLTSLHNF 235 Query: 238 IPKYL 242 PK L Sbjct: 236 DPKNL 240 >gi|116071731|ref|ZP_01468999.1| possible MesJ-like protein [Synechococcus sp. BL107] gi|116065354|gb|EAU71112.1| possible MesJ-like protein [Synechococcus sp. BL107] Length = 337 Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 8/189 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG DSM LL L + + + + + DH + + C Sbjct: 35 LVVAVSGGQDSMALLGLLRDLTAVHHWTLVLWHG---DHHWHPHSSQIASALKQWCDDQG 91 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +A V + PQT A AR RY +++ N +T HT D+ ET+ +++ R Sbjct: 92 LALQVETAPEELPQT--EADARSWRYRCLTQ-LTNANGADAVTGHTASDRAETLLLQASR 148 Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+G + + RP L R + + DP N F Sbjct: 149 GSDLAGLGSLRAVRPLQAHAPEEAQLRRPLLGFSRSETVQICSDLQLPIWNDPGNQSTDF 208 Query: 200 ERVRVRRFV 208 R R+R V Sbjct: 209 ARNRIRHEV 217 >gi|155371675|ref|YP_001427209.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella virus 1] gi|155124995|gb|ABT16862.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella virus 1] Length = 504 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 19/197 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V P+ I +++SGG DSM L L + R+ + V++ R A DE +V+D Sbjct: 200 VSPSEITMSISGGVDSMTLFHILSGL---RNVYGYELRVAMVNYANRACAYDEETFVADW 256 Query: 77 CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + ++ + + KP +T R RY + A+ + H Sbjct: 257 VNWNGHVLNIRRIDEISRKPCVDMGMRTTYETFTRNVRYGVYKTIARD---AYVAMGHNK 313 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LE ++ + K LSGM DT++ + RP L ++DI + NI + Sbjct: 314 DDVLENIFQNVAME--TKYENLSGM-DTVVEQDGIKFFRPLLGVAKDDIVEYARSHNIPF 370 Query: 189 CEDPSNTDDRFERVRVR 205 P++T F R ++R Sbjct: 371 L--PNSTPPHFMRGQIR 385 >gi|302878626|ref|YP_003847190.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2] gi|302581415|gb|ADL55426.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2] Length = 449 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 11/183 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ LL LH + S+ K SA+ V H + A + +C R + Sbjct: 30 ILLGLSGGVDSVVLLHLLHHLAPRFSW---KLSALHVHHGISRNADSWAEFCRLLCERHQ 86 Query: 82 IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + V + Q G+ AAAR R+A + AH DDQ+ET++++ Sbjct: 87 IPLCIERVDIAPLRSQ-GIEAAARRLRHAAFDAQ----RCDFVALAHHADDQVETLFLQL 141 Query: 140 QRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R KG + + + RP L+ R++I ++ ++ + W ED SN D+R Sbjct: 142 LRGAGVKGASAMPVLSQPKKTQRTHRLVRPLLQFTRDEILTYAAEQRLEWVEDESNADER 201 Query: 199 FER 201 + R Sbjct: 202 YPR 204 >gi|193212239|ref|YP_001998192.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327] gi|193085716|gb|ACF10992.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327] Length = 334 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 59/201 (29%), Positives = 83/201 (41%), Gaps = 33/201 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76 +LVAVSGG DSM LL L + + + V HC LR E+ DE +V Sbjct: 24 VLVAVSGGPDSMALLHLLVAAAP------VLHLRLGVAHCNFGLRGEESDGDEA-FVRYE 76 Query: 77 CSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 C+ L + V +WK S +T AR RY E + LI T H Sbjct: 77 CAGLGLDFHVRRFDTKAVATTWKKSIEET-----ARLLRYDFFEELCREKGYELIATGHH 131 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D ET+ R A G+ M L RP + R++I S+L +++I+ Sbjct: 132 SGDNAETMLFNLFRGTAASGLRGIRMRQGRLI-------RPLIPFSRQEIVSYLDEKSIA 184 Query: 188 WCEDPSNTDDRFERVRVRRFV 208 W D +N +R +R V Sbjct: 185 WRTDRTNAGLEHDRNYIRNRV 205 >gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] gi|119959144|gb|ABM16149.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] Length = 323 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AHT DDQ ETV + R + ++GM + W RP L RR R Sbjct: 117 VLLAHTLDDQAETVLLGLGRGSGARS--IAGMRPSD----PPWC-RPLLGVRRAVTRLAC 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ +DP NTD RF RVR+R V Sbjct: 170 AELGLTPWQDPHNTDRRFTRVRLRTEV 196 >gi|126464914|ref|YP_001040023.1| PP-loop domain-containing protein [Staphylothermus marinus F1] gi|126013737|gb|ABN69115.1| PP-loop domain protein [Staphylothermus marinus F1] Length = 330 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 25/136 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDV 76 HI+VAVSGG DS+ LL L++ LS R G K +A+ +D + T KD +R V++ Sbjct: 49 HIVVAVSGGKDSLSLLHYLYN-LSKRVPG-WKITALLIDEGIGGYRDITKKDFLRVVNE- 105 Query: 77 CSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATL 121 L + + + S+K T ++ RE R L+++ A+ + T+ Sbjct: 106 ---LGVNYKIASFKEYLGYTLDEIVRIGREKGLPYLPCSYCGVFRRYLLNKVARDLGGTV 162 Query: 122 IMTAHTFDDQLETVYM 137 + TAH DD ++T M Sbjct: 163 LATAHNLDDVIQTYVM 178 >gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304] gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 304 Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS+ L L+ + RS ++F AI++D + V V +L Sbjct: 51 IAIALSGGKDSVTLAFVLNKLYGFRS--DLEFFAITIDEGIAGYRPPTVEIARKVTEQLG 108 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA----------RYALISEHAKTINATLIMTAHTFDDQ 131 + H VVS++ + T R R L++ A+ + AT + T H DD+ Sbjct: 109 MEHLVVSFEENFGMTLDEMVKRGDKKPCTYCGVFRKYLLNRTAREMGATKLATGHNLDDE 168 Query: 132 LETVYM 137 +T+ + Sbjct: 169 TQTILL 174 >gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 770 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I++++SGG DSM + AL + RS G ++ +A+ +D+ R +K E YV C +L Sbjct: 417 IIISLSGGVDSMVIASALAHL--RRSLGYNLQLTAVHIDYANRPDSKAEASYVERYCQQL 474 Query: 81 RIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + V + ++ T + R SE + + +M H D E V Sbjct: 475 EIEYHVRRIEEVTRGVTNRDEYEKRTREQARSEVDEEVG---VMLGHHRGDLRENVL--- 528 Query: 140 QRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRR 174 A KG G LSGM + D + I RP LR + Sbjct: 529 --SNAHKGSGPLDLSGMTAVSIND-GVIIHRPLLRLEK 563 >gi|171185906|ref|YP_001794825.1| PP-loop domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935118|gb|ACB40379.1| PP-loop domain protein [Thermoproteus neutrophilus V24Sta] Length = 329 Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 25/144 (17%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69 L+ P ++ VAVSGG DS+ LL L L +K A +++ C AK + Sbjct: 45 LIEPGDYVAVAVSGGKDSLVLLYMLGRFLQRGLLKDVKMEAFTINEGHPYSCFYRMAKRD 104 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121 YV ++ +L I ++V S+K+ T + A ++ H TI+ L Sbjct: 105 --YVRELAGKLGIEYNVYSFKDIFGVTAMELAENLSKRGH-EVHMCTIDGVLRRRVMNII 161 Query: 122 --------IMTAHTFDDQLETVYM 137 I TAH DD+ +TV M Sbjct: 162 GSRRGWTKIATAHNLDDEAQTVLM 185 >gi|297526784|ref|YP_003668808.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] gi|297255700|gb|ADI31909.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] Length = 331 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 25/136 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDV 76 HI+VAVSGG DS+ LL L++ LS R G + +A+ +D +R T KD +R V++ Sbjct: 50 HIVVAVSGGKDSLSLLHYLYN-LSKRVPG-WRITALLIDEGIRGYRDITKKDFLRVVNE- 106 Query: 77 CSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATL 121 L + + + S++ T ++ RE R L+++ A+ + T+ Sbjct: 107 ---LGVDYKIASFEEYFGYTLDEIVRIGREKGLPYLPCSYCGVFRRYLLNKVARELGGTV 163 Query: 122 IMTAHTFDDQLETVYM 137 + TAH DD ++T M Sbjct: 164 LATAHNLDDVVQTYVM 179 >gi|307729282|ref|YP_003906506.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003] gi|307583817|gb|ADN57215.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003] Length = 482 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 115/466 (24%), Positives = 168/466 (36%), Gaps = 77/466 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+V +L A + VA SGG DS LL A + R G + A+ V H L Sbjct: 14 LEAVGVAFAALPVHARVAVAFSGGVDSGVLLDA-----AVRVAGASRCMALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARYALISEHAKTINATLIM 123 A + + + +R R G+ AAAR+ARY + T + Sbjct: 69 ADAWLTHC-EAFARERGVEFAARHVEVLRDAGISVEAAARDARYQALDALCATHGIQWLW 127 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLL 182 A DDQ ETV + Q GL+ M + RP L R I + Sbjct: 128 LAQHADDQAETVLL--QLLRGAGLAGLAAMATEFAPAGAAAVRVRPLLHLLRAQIEQYAN 185 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPK 240 R++ W +D SN D R+ R +R V AL + F+D R + A A + Sbjct: 186 ARHLRWIDDESNADTRYARNALRHEVTP----ALAIHFPGFRDALARTASHAASAQRLLD 241 Query: 241 YL--------------TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 L + ++IA+ + LN LL Y +R+ + L Sbjct: 242 ELARIDLELASRDEGRALSHHALIALDDERALN----LLRYWMRLQGFVPASSARLGDAL 297 Query: 286 SMERVMLFLKSGKRGCVS-IGRVVIDRRANFLW-----------ITRAVRNLPTLILYPE 333 R + G R V G+ + R W A R + L E Sbjct: 298 RQLREVGTSGDGHRLRVDHAGQALRCYRGLVYWEAGDSRDPADETALAAREVSELAWSGE 357 Query: 334 ET---TVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390 T W G + F+ L S R A + +P + QRAL S S+ GG+ + Sbjct: 358 ATWRVPQWRGTFVFEALDAS-------HARTAASEAAVPVSVLQRALLSARSRRGGERMR 410 Query: 391 ---APFSRFMT-------------KFDLPVAYAFSISFGKVFIPRL 420 AP +R T K D+P+ Y I +F+P L Sbjct: 411 TGDAPGARSRTLKNLFQERGIAAWKRDVPLLY---IGDELLFVPLL 453 >gi|257075864|ref|ZP_05570225.1| ATPase of the PP-loop superamily [Ferroplasma acidarmanus fer1] Length = 311 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L LH +LS+R ++ +A +VD + + +C L Sbjct: 51 ISVAISGGKDSSATLYLLHKILSERR--NLELTAFTVDEGIEGYRSTGLEKARKLCENLG 108 Query: 82 IAHSVVSWKNS 92 I H+V+S+K + Sbjct: 109 IEHNVISYKEN 119 >gi|154504409|ref|ZP_02041147.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149] gi|153795338|gb|EDN77758.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149] Length = 245 Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 18/200 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + + F K + SAI+VD + ++ + +C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGFEDF---DLSPIQALCQ 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L I + + S + + ++ + + R +++ K + I AH DD + Sbjct: 79 ELNIPYRIESSDIYEILFHVRKESNPCSLCAKMRKGALNQAIKEMGCNKIAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L +L + RP + +D+ F + + + Sbjct: 139 ETMLL----SLIFEGRFYSFSPKTYLDRTDLTVIRPMMFVDEKDVIGFKNKYQLPVVKSK 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R V+ +R ++ Sbjct: 195 CPVDGYTKRQYVKELLRQLN 214 >gi|268592643|ref|ZP_06126864.1| PP-loop family protein [Providencia rettgeri DSM 1131] gi|291311783|gb|EFE52236.1| PP-loop family protein [Providencia rettgeri DSM 1131] Length = 304 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L S+ + I+FS I+V+ ++ E Y+ + Sbjct: 37 IMVCLSGGKDSYTLLSILQSL---QKSAPIQFSLIAVNLDQKQPGFPEHILPAYLDKLGV 93 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 94 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F ++ P N Sbjct: 153 MFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAKDFPII--PCN 206 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227 >gi|260587706|ref|ZP_05853619.1| PP-loop family protein [Blautia hansenii DSM 20583] gi|331084003|ref|ZP_08333110.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541971|gb|EEX22540.1| PP-loop family protein [Blautia hansenii DSM 20583] gi|330402365|gb|EGG81935.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium 6_1_63FAA] Length = 238 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 18/198 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I + VSGG DS+ +L ALH ++ R + K + AI+VD ++ D+++ +C L Sbjct: 26 IAIGVSGGKDSLTMLYALHGLM--RFYPKHFQLEAITVDLGHKDFCADKIQR---LCDSL 80 Query: 81 RIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I ++V ++ K Q A+ R ++ AK + + AH DD +E Sbjct: 81 EIPFTLVKTDIAPIIFEERKEQNPCSLCAK-MRKGALNNAAKDLGCNKVAYAHHKDDVVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +G + T L ++L + RP L D+ F + + + P Sbjct: 140 TMLL----SLIYEGRFHTFSPKTYLDRMDLTVIRPLLYVNEADVIGFKNKYQLDIEKSPC 195 Query: 194 NTDDRFERVRVRRFVRDI 211 D +R + ++ + Sbjct: 196 PVDGYTKRQYAKELLKTL 213 >gi|114320993|ref|YP_742676.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|122311407|sp|Q0A7K1|TILS_ALHEH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|114227387|gb|ABI57186.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 445 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 9/173 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL + ++ + R ++ A+ + H L+ A + + L + Sbjct: 27 VAYSGGLDSTVLLHLMAALSAAR---ELPLRAVHIHHGLQPQADAWAEHCRQQAAALGVD 83 Query: 84 HSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V+ + + GL AAAR+ARYA ++ H ++ A ++TAH DDQ ETV + R Sbjct: 84 CLVLPVEVRRDSGEGLEAAARQARYAALASHLQSGEA--LLTAHHADDQAETVLLHLLRG 141 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + GL+GM + RP L RE +R++ + W EDPSN Sbjct: 142 SGPR--GLAGMRAQRPLGRGR-LLRPLLPWPRERLRAYGDTHALCWVEDPSNA 191 >gi|298674631|ref|YP_003726381.1| PP-loop domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287619|gb|ADI73585.1| PP-loop domain protein [Methanohalobium evestigatum Z-7303] Length = 314 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A+SGG DS LL L+ + DR I AI++D + D ++ ++ L Sbjct: 62 IAIALSGGKDSTVLLYILNKIFGDRP--DINLVAITIDEGISGYRLDTIQKSKELTDNLG 119 Query: 82 IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H + S+ + T G + R L+++ AK AT + H DD Sbjct: 120 IKHVIRSFADEYGMTLDELTQKQRSYGACSYCGVFRKKLLNKTAKEEGATRLAIGHNLDD 179 Query: 131 QLETVYM 137 + +T+ + Sbjct: 180 EAQTILL 186 >gi|288572799|ref|ZP_06391156.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568540|gb|EFC90097.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 244 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78 H++V +SGG DS+ LL+AL + R + +KF SA SVD +V + +C Sbjct: 29 HVVVGLSGGKDSVFLLVALSQI---RRWSPVKFDLSACSVDI---SGGNWDVSPMEKLCY 82 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAA-----REARYALISEHAKTINATLIMTAHTFDDQLE 133 L I + VV + + R +++ +AK + + H DD +E Sbjct: 83 ELEIPYKVVPHPIEEIIRIREERSPCSFCANMRRGILNSYAKEMGGNTVALGHNLDDAVE 142 Query: 134 TVYM 137 T M Sbjct: 143 TALM 146 >gi|269102678|ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162576|gb|EEZ41072.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 309 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 31/174 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRETAKDEVR 71 I+V +SGG DS +L L S+ + +KF I+V DH L E Sbjct: 42 IMVCLSGGKDSYAMLDILRSL---QRSAPVKFELIAVNLDQKQPGFPDHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK I AT I H Sbjct: 92 YLDTLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTAKEIGATKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180 DD LET+++ G L M ++ D + RP CR +DI F Sbjct: 151 RDDMLETLFLN-----MFYGGKLKSMPPKLVSDNGEHVVIRPLAYCREKDIERF 199 >gi|226356848|ref|YP_002786588.1| hypothetical protein Deide_18460 [Deinococcus deserti VCD115] gi|226318838|gb|ACO46834.1| Conserved hypothetical protein, precursor [Deinococcus deserti VCD115] Length = 300 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79 ++V +SGG DS LL + LH L ++ + + A+++D +D + RY++ + R Sbjct: 45 VMVCLSGGKDSYTLLDVLLH--LQRKAPIRFEIVAVNLDQGQPGFPQDVLPRYLTGMGVR 102 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +SVV K + +T +R R ++ HA+ I AT I H DD LET+ Sbjct: 103 HDILTQDTYSVVKEKTPEGKTTCALCSR-LRRGILYAHARRIGATKIALGHHRDDILETM 161 Query: 136 YM 137 +M Sbjct: 162 FM 163 >gi|48477224|ref|YP_022930.1| ATPase of the PP-loop superamily [Picrophilus torridus DSM 9790] gi|48429872|gb|AAT42737.1| ATPases of the PP-loop superamily [Picrophilus torridus DSM 9790] Length = 312 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 19/143 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ L L+ +LSDR KIK A +VD + + + +C L Sbjct: 51 ISVAISGGKDSLVTLYVLNKILSDRRNLKIK--AFTVDEGISGYRPSGIEKAARLCKSLG 108 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ---LETVYMR 138 I H ++S+K+ E Y L + +I+ T I +H + + + M Sbjct: 109 IDHEIISFKH------------EFGYTL--DEIMSIDNTRISCSHCGPMRRSLMNKISMY 154 Query: 139 SQRDYAEKGMGLSGMCDTILYDL 161 ++ DY G+ L +IL ++ Sbjct: 155 NKADYLALGINLDDYAQSILMNV 177 >gi|160935943|ref|ZP_02083317.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC BAA-613] gi|158441185|gb|EDP18902.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC BAA-613] Length = 479 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 49/239 (20%) Query: 6 IESVRFFVRSLVYPAHIL-------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 +E + VR + H+L AVSGG+DS+ LL L + R I A+ V Sbjct: 1 MEGLEHRVRETMEQYHMLEPGDRVIAAVSGGADSVCLLALLCAWREPRG---ISIRALHV 57 Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEH 113 H LR E A + +V +C L + + V + + G+ A R RY + + Sbjct: 58 HHGLRGEEADRDADFVRSLCEGLHVPCHILKVDVRGLAAEKGMSEEEAGRFLRYEALEKE 117 Query: 114 A---------------------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 A +++ I AH DQ+ET+ R Sbjct: 118 ALDWEGEDRASGARSGQDGDWAHGGLAGSSLSPVKIAVAHHSGDQVETILHNLFR----- 172 Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 G GL GM I+Y I RP L R+ I +L ++ + +D +N + R R+R Sbjct: 173 GSGLFGM-KGIVYRRGR-IIRPLLDVDRDCILKWLADHDLPYVQDSTNDTLHYTRNRIR 229 >gi|295101039|emb|CBK98584.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Faecalibacterium prausnitzii L2-6] Length = 263 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 83/219 (37%), Gaps = 38/219 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHCLRETAKDEVRYV 73 +LV VSGG DS+ L I L + F +F VD+ E Sbjct: 30 VLVGVSGGKDSVALTIGLARLRQYLGFPFEVVAVTLDPQFGGKPVDYSALEALFRRYDVP 89 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC L I V ++N K L A R R AL + A+ + + H DD +E Sbjct: 90 YEVCRTL-IGPIVFDYRNEKNPCSLCAKMR--RGALHTA-AEELGCNKVALGHHLDDAIE 145 Query: 134 TVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNI----S 187 T YM R+ G G T L D L + RP L +++R + + S Sbjct: 146 TFYMNLWRE------GRIGCFSPVTELSDRGLTLIRPLLLATEQEVRCAVKEEGFPIVKS 199 Query: 188 WC--------EDPSNTDDRF--ERVRVRRFVRDIDLHAL 216 C ED N F ER R R R LHAL Sbjct: 200 RCPADGVTTREDTKN----FVRERCRTDRAFRQKTLHAL 234 >gi|11467837|ref|NP_050888.1| hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|11467908|ref|NP_050959.1| hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|61216751|sp|Q9T390|TILS_NEPOL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|5880766|gb|AAD54859.1|AF137379_82 hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|5880837|gb|AAD54930.1|AF137379_153 hypothetical chloroplast RF62 [Nephroselmis olivacea] Length = 367 Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 17/215 (7%) Query: 2 FLSPIESVRFF-----VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 +LS E +R F ++ LV P+ +L++ SGG DS+ LL L + ++ ++ + Sbjct: 33 YLSMREILREFEEACLLQGLVSPSTRLLISCSGGQDSVTLLFLLCQLQTNWTW---RLGV 89 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + +H R + + ++ +C ++ S+ S + R R ++ + Sbjct: 90 VYCNHMWRYGSIETPAKLARICLLFGVS---CSFSVSGSRLQKEEEGRSWRLRVLCRMSS 146 Query: 116 TINATLIMTAHTFDDQLETVY---MRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFL 170 + I T HT D++ET+ +R + + DT + +++ I RP L Sbjct: 147 IHSWFYISTGHTASDRIETLLSNVLRGSSSSGMRSINWYTSLDTQVGHRRISIPIIRPLL 206 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 R ++R++ + + C DPSN D R R R+R Sbjct: 207 GISRLELRNYANRWKLPLCYDPSNQDQRIRRNRIR 241 >gi|237796737|ref|YP_002864289.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] gi|229260662|gb|ACQ51695.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] Length = 249 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT + H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVS---KSIGATKVALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + K S D D + I RP + R + I+ + + N+ + P D Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDMVKKYNLPVVKSPCPED 203 Query: 197 DRFERVRVRRFV 208 + R ++ + Sbjct: 204 KKTTREEIKNLM 215 >gi|269216709|ref|ZP_06160563.1| cell cycle protein [Slackia exigua ATCC 700122] gi|269129854|gb|EEZ60937.1| cell cycle protein [Slackia exigua ATCC 700122] Length = 369 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 41/215 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKF-SAISVDHCLRETAKD-EVRYVSDVCS 78 +++ VSGGSDS AL + +D R+ G + F S + V+H LR A D + +V + Sbjct: 34 VVLMVSGGSDS----TALAYIGADLRNRGALGFISMLHVNHKLRGEASDADAAFVESLAK 89 Query: 79 RL-------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI----NATLIMTAHT 127 L I + + ++ A + + + +A ++ TAHT Sbjct: 90 ALDIPLFACEIDMPALMREGGNMESVARRERYAAARDAVESTCRHLGAPADAGVVFTAHT 149 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQ-- 183 DD+ E YMRS G G G+ + + + RP L R+D+RS++ Sbjct: 150 ADDRAENFYMRSI-----VGTGPGGLRAMKHASFVQGVDVRRPLLELSRDDLRSYIESLP 204 Query: 184 --------RNISWCEDPSNTD-DRFERVRVRRFVR 209 W ED +N D DRF R FVR Sbjct: 205 TDRVATDAAGARWREDATNADTDRF-----RAFVR 234 >gi|325263925|ref|ZP_08130658.1| ExsB family protein [Clostridium sp. D5] gi|324030963|gb|EGB92245.1| ExsB family protein [Clostridium sp. D5] Length = 244 Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI V +SGG DS+ LL ALH + R + K + SAI+V+ ++ + +C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL--KRFYPKHFELSAITVNLGFENF---DLSPIQALCKE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + + +V + + + +T + + R +++ K + + AH DD +E Sbjct: 80 LEVPYRIVDSEIYHILFDVRKETNPCSLCAKMRKGALNDAIKEMGCNKVAYAHHKDDIIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +G S T L ++L + RP + D+ F + N+ Sbjct: 140 TMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPIMFIDEADVIGFKNKYNLPVVGSKC 195 Query: 194 NTDDRFERVRVRRFVRDID 212 D +R + VR ++ Sbjct: 196 PVDGYTKRQYAKELVRQLN 214 >gi|325282320|ref|YP_004254861.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus proteolyticus MRP] gi|324314129|gb|ADY25244.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus proteolyticus MRP] Length = 292 Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79 I+V +SGG DS LL + LH L R+ + + A+++D KD + RY+S++ Sbjct: 37 IMVCLSGGKDSYTLLDVLLH--LQKRAPVRFEVVAVNLDQGQPGFPKDVLPRYLSELGVP 94 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +SVV K + +T +R R ++ HA+ + AT I H DD LET+ Sbjct: 95 HDILTEDTYSVVKEKIPEGKTTCSLCSR-LRRGILYAHARRLGATKIALGHHRDDILETL 153 Query: 136 YM 137 +M Sbjct: 154 FM 155 >gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycobacterium leprae TN] gi|221229493|ref|YP_002502909.1| hypothetical protein MLBr_00213 [Mycobacterium leprae Br4923] gi|6137303|sp|O69538|TILS_MYCLE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3097231|emb|CAA18805.1| hypothetical protein MLCB2548.18c [Mycobacterium leprae] gi|13092562|emb|CAC29721.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932600|emb|CAR70306.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 323 Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 29/189 (15%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76 VA+SGGSDS+ L + S +F VDH L+ ETA+ + +S Sbjct: 30 VALSGGSDSLALTAVAAQLRSTTAF--------IVDHGLQSDSAAVAETARKQA--ISLG 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C ++ + P+ GL AAAR ARYA++ + ++ AHT DDQ ETV Sbjct: 80 CVDAQVLCVQID-PPFGPKGGLEAAARAARYAVLGANRNGP----VLLAHTLDDQAETVL 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G G + +D W RP L RR R+ + ++ +DP NTD Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRSVPRAACHELGLNAWQDPHNTD 187 Query: 197 DRFERVRVR 205 R+ R R+R Sbjct: 188 CRYTRTRLR 196 >gi|159471209|ref|XP_001693749.1| predicted protein [Chlamydomonas reinhardtii] gi|158283252|gb|EDP09003.1| predicted protein [Chlamydomonas reinhardtii] Length = 329 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 8/188 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS+ LL L + S+ ++ + DH R + +V ++ ++ R Sbjct: 24 VLVAVSGGQDSVCLLQLLADLRHLYSWRRL--GVVHCDHRWRTDSAANAAFVVELATQ-R 80 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ + +ARE RY + S A ++TAHT D+ T+ + R Sbjct: 81 LG---LEAEDVHVEARCERSAREWRYHVFSRVAAECGYGAVVTAHTSTDR-RTMLLNLLR 136 Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ LS + + RP L+ RE+ +F+ Q + D +N + Sbjct: 137 GAGPSGLVALSRNRPLPPPPGPVRLVRPLLQFAREETLAFVQQAGLPHFHDSTNDHNEHR 196 Query: 201 RVRVRRFV 208 R R+R V Sbjct: 197 RNRLRNEV 204 >gi|116074359|ref|ZP_01471621.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916] gi|116069664|gb|EAU75416.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916] Length = 342 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 17/203 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RL 80 +L+AVSGG DSM L L ++ + + H S++ + L Sbjct: 37 LLLAVSGGQDSMALTALL------LGLSRLHHWELHLWHGDHSWHPGSAAIASELQAWSL 90 Query: 81 RIAHSVVSWKNSKPQ-TG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + +N+K + TG A AR RYA ++ A + + ++ HT D+ ET+ ++ Sbjct: 91 GQGLPITVDRNAKNEATGRTEAEARRWRYAQLATCATALGSR-VVCGHTATDKAETLLLQ 149 Query: 139 SQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G+G + L D + + RP L R+D + N+ DPSN Sbjct: 150 LTRGTDLAGLG--SLRRQRLLDAEQHPAVHLVRPLLGFNRDDTAAICRDLNLPLWLDPSN 207 Query: 195 TDDRFERVRVRRFVRDIDLHALY 217 T+ RF R R+R+ V + L+ LY Sbjct: 208 TNLRFSRNRIRQEVMPV-LNDLY 229 >gi|330508540|ref|YP_004384968.1| hypothetical protein MCON_2761 [Methanosaeta concilii GP-6] gi|328929348|gb|AEB69150.1| conserved hypothetical protein TIGR00269 [Methanosaeta concilii GP-6] Length = 308 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 13/127 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I VAVSGG DS LL AL VL+++ +++ A++VD + D + + ++ Sbjct: 49 RIAVAVSGGKDSTALLFALSRVLAEK---EVEMVALTVDEGIAGYRDDTIVAAKRIARQM 105 Query: 81 RIAHSVVSWKNSKPQT--GLMAAAREA--------RYALISEHAKTINATLIMTAHTFDD 130 + ++S++ + ++ A A R ++ AK++ T + T H DD Sbjct: 106 GVEQVIISFQEEYGWSLDEMVVGAEVAPCTYCGVFRKNALNCAAKSLGVTKLATGHNQDD 165 Query: 131 QLETVYM 137 + ++V M Sbjct: 166 EAQSVMM 172 >gi|188996043|ref|YP_001930294.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931110|gb|ACD65740.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 457 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDVC 77 IL+A SGG DS+ L L + KI+ + + +H LR E+ +D+ ++ S + Sbjct: 24 ILIAFSGGPDSLVLTNLLLKFQKTLNIAKIQLAHL--NHTLRKESDQDQEFCEKFASSLG 81 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + + V + + + A R RY +E + N I T H D E++ + Sbjct: 82 LKIHVKKADVKKVAREQKISVEEAGRLERYKFFNEILQKENLNKIATGHHLSDLTESIVL 141 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + G + I+ RP +E+I + + + + D SN Sbjct: 142 WFIQGNKRGLKGFRPKENNII--------RPLYLITKEEIEEYCQKNGLEYLIDQSNFSR 193 Query: 198 RFERVRVR 205 ++ R +VR Sbjct: 194 KYLRNQVR 201 >gi|15805507|ref|NP_294203.1| C32 tRNA thiolase [Deinococcus radiodurans R1] gi|81551821|sp|Q9RX35|TTCA_DEIRA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|6458168|gb|AAF10060.1|AE001907_6 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 299 Score = 43.9 bits (102), Expect = 0.048, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79 ++V +SGG DS LL + LH L ++ + A+++D KD + RY++ + R Sbjct: 44 VMVCLSGGKDSYTLLDVLLH--LQKKAPIDFEVVAVNLDQGQPGFPKDVLPRYLTALGVR 101 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +SVV K + +T +R R ++ +HA+ I AT I H +D LET+ Sbjct: 102 HDILTEDTYSVVKEKTPEGKTTCSLCSR-LRRGILYQHAREIGATKIALGHHREDILETL 160 Query: 136 YM 137 +M Sbjct: 161 FM 162 >gi|331083661|ref|ZP_08332772.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA] gi|330403872|gb|EGG83424.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA] Length = 179 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 23/166 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77 +H++V +SGG+DS+ LL L + F + A+ V+H +R E +DE + VC Sbjct: 21 SHVIVGLSGGADSVCLLKLLKEYKKQQEF---QLYAVHVNHHIRGEEAVRDE-EFSKAVC 76 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT---LIMTAHTFDD 130 +L + +V + + + L A R R + K I + I AH +D Sbjct: 77 KKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKAMKNIKVSGRKRIALAHHEND 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMC---DTILYDLNLWISRPFLRCR 173 ETV R G+G + C + +LY PF+ C Sbjct: 137 NAETVLHNLMRGSGAAGLGGNTSCVRGEGLLYS-------PFVVCE 175 >gi|291522347|emb|CBK80640.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Coprococcus catus GD/7] Length = 248 Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 16/198 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I + VSGG DS+ +L AL + R + K + AI+V L D V+ +C+ L Sbjct: 26 IAIGVSGGKDSLTMLYALKGL--QRFYPKHFELEAITVGLGLGNFNMDAVK---SLCNEL 80 Query: 81 RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +++VS + + + + + + R ++ A + I H DD +ET Sbjct: 81 NIPYTIVSTEIGPIIFDQRHEKNPCSLCAKMRKGALNNKALELGCNKIAYGHHRDDLVET 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M +G + T L L + RP L DI F ++N+ + P Sbjct: 141 MLM----SLIYEGHFYAFPPVTKLERTGLTVIRPLLYMTEPDIIGFARKQNLPVAKSPCP 196 Query: 195 TDDRFERVRVRRFVRDID 212 + R + + I+ Sbjct: 197 ANGHTRREYTKNLMHQIN 214 >gi|225567970|ref|ZP_03776995.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM 15053] gi|225163258|gb|EEG75877.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM 15053] Length = 245 Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + R F K + SA++VD E + V +C Sbjct: 25 HIAVGISGGKDSLTLLYALHGL---RRFYPNKFELSAVTVDLGYSEC---DFTPVIKLCK 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + ++ + + R +++ K + + AH DD + Sbjct: 79 ELGVPYRIVKTDIAHILFEERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 138 Query: 133 ETVYM 137 ET+ + Sbjct: 139 ETMLL 143 >gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5] Length = 447 Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCS 78 IL+ VSGG DSM +L S+ + + + V HC LR DE + + + Sbjct: 23 ILLTVSGGVDSMVML----SLFTRSGY------RVGVAHCNFQLRGAESDEDEVLVEEEA 72 Query: 79 RLRIAHSVVSWKNSKPQTG---------LMAAAREARYALISEHAKTINATLIMTAHTFD 129 R V + N + +T + AAR RYA ++ T++ AH D Sbjct: 73 R----KYGVEFYNKRFETAAEMERTGESMEMAARRLRYAWFDALSREHGYTVVAIAHHAD 128 Query: 130 DQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D +ET ++ R +G+ G+S ++ RP + R++I + + I + Sbjct: 129 DSIETFFINLLRGTGLRGLTGISTQVGKVV--------RPLMFASRKEILEYAVANRIPF 180 Query: 189 CEDPSNTDDRFERVRVR 205 ED SN ++ R ++R Sbjct: 181 REDSSNRSTKYLRNKIR 197 >gi|225849954|ref|YP_002730188.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1] gi|254789038|sp|C0QU23|TILS_PERMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225646259|gb|ACO04445.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1] Length = 452 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 30/196 (15%) Query: 22 ILVAVSGGSDSMGLLIAL-----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 ILVA SGG DS L L H +SD ++H LR+ + ++ R+ D Sbjct: 22 ILVAFSGGIDSTVLTYLLIKFRDHLKISDIYLA-------HLNHSLRKESDEDQRFCEDF 74 Query: 77 CSR--LRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + L I V K+ K + + ARE RY+ + + + + T H D + Sbjct: 75 AKKYGLEIFTKKVDIKSLAEKEKKSIEQKAREERYSFFRKVMEERSINRLATGHHLSDLV 134 Query: 133 ETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET+ +++ R G+ G I RP ++ I ++ ++ I + Sbjct: 135 ETMIMWFIQGNRK------GIKGFRPK-----ERDIIRPLYLINKDQIENYAREKGIEYR 183 Query: 190 EDPSNTDDRFERVRVR 205 D +N + F R R+R Sbjct: 184 IDITNFETDFLRNRIR 199 >gi|256004136|ref|ZP_05429120.1| PP-loop domain protein [Clostridium thermocellum DSM 2360] gi|255991884|gb|EEU01982.1| PP-loop domain protein [Clostridium thermocellum DSM 2360] Length = 218 Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 24/199 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL+AL + ++F +KF AI++ + E VR ++C R Sbjct: 8 IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 61 Query: 80 LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + ++++V + ++ K + A R AL AK + + AH DD + Sbjct: 62 IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMDDVI 120 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + Y + S + T L L++ RP + + ++ F+ NI +P Sbjct: 121 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 176 Query: 193 SNTDDRFERVRVRRFVRDI 211 + + R++++D+ Sbjct: 177 CPANGYTK----RQYIKDL 191 >gi|295115158|emb|CBL36005.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SM4/1] Length = 131 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R +++ AK + I AH DD ++T+ + +G S T L ++L++ Sbjct: 2 RKGALNQAAKNLGCNKIAYAHHRDDLIDTMLL----SLIYEGRFHSFSPKTYLDRMDLFV 57 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 RPFL DI F + ++ C++P D + +R V++ ++ I++ A +K + F Sbjct: 58 IRPFLYIPEADIIGFKNRYSLPVCKNPCPVDGKTKREYVKQLIKTINMEASGVKDRLFH 116 >gi|21909546|ref|NP_663814.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315] gi|21903726|gb|AAM78617.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315] Length = 395 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 17/158 (10%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARY 107 KI+ V+H R + E Y+ + I V +++ G+ + AAR+ RY Sbjct: 15 KIRIGIAHVNHKQRSESDSEEAYLKCWAKKHDIPIYVSNFE------GIFSEKAARDWRY 68 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 A N + ++TAH DDQ ET+ MR R + LSG+ + N + R Sbjct: 69 AFFKSIMLKNNYSALVTAHHSDDQAETILMRLIR--GSRLRHLSGIKSVQPF-ANGQLIR 125 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 PFL ++D+ I ED SN + F R RVR Sbjct: 126 PFLTFSKKDLPE------IFHFEDSSNRELSFLRNRVR 157 >gi|304437099|ref|ZP_07397062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370050|gb|EFM23712.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 474 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 17/190 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG+DS+ LL L + + G + +H +R A R Sbjct: 32 VLAACSGGTDSLVLLDILRDL---HAAGGPQIICAHYEHGIRGAASRADADAVAAYCAAR 88 Query: 82 IAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + + L AAR RY + + + +I AH DD ETV Sbjct: 89 DIPCIIEAGDVPRYARTHKLSLETAARVCRYDFLHRLQEQEHCDVIALAHHADDLAETVL 148 Query: 137 MRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G G +G+ +D ++L RP L R +I ++ + C D +N Sbjct: 149 MRILR-----GTGPAGLAAMREWDGVHL---RPLLHTARTEIERYIRTHELHPCHDLTND 200 Query: 196 DDRFERVRVR 205 +R R+R Sbjct: 201 QQDAQRNRIR 210 >gi|268323619|emb|CBH37207.1| conserved hypothetical protein, PP-loop family [uncultured archaeon] Length = 302 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 26/153 (16%) Query: 18 YPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 Y I VA+SGG DS LL L + DR+ ++F AI+VD ++ +R V Sbjct: 48 YGDRIAVALSGGKDSSALLYMLKEKIFHDRN--DLEFFAIAVDEGIKGFRSATLRNAERV 105 Query: 77 CSRLRI-------AHS--------VVSWKNSKPQT--GLMAAAREARYALISEHAKTINA 119 L I AH V + P T G++ R ++ AK + A Sbjct: 106 AKELEIDCFIYSFAHEFGFTLDEIVAKGFDQAPCTFCGVL------RRRILDVKAKEMGA 159 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 T ++TAH DD+++T+ + R E+ L G Sbjct: 160 TKVVTAHNLDDEVQTILINYLRGDIERLGRLQG 192 >gi|291277171|ref|YP_003516943.1| PP-loop family protein [Helicobacter mustelae 12198] gi|290964365|emb|CBG40215.1| Putative PP-loop family protein [Helicobacter mustelae 12198] Length = 254 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 19/178 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ L L + F K +F A+++ + L E + Y++++C R Sbjct: 30 VLLGLSGGKDSILLACILERMQRHAPF-KFEFKAVTIHYGLGE----DFSYLTEICQRQG 84 Query: 82 IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I H + + K + + +R R AL ++ AK + + AH DD E Sbjct: 85 IPHEIYHTSIAETIREKRREGSSYCSFCSRMRRGALYNK-AKELGYNKVAIAHHLDDAAE 143 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + +M + + L M + + + RP + R F+ +NI D Sbjct: 144 SFFMNLTYNGS-----LRSMPPIYRAENGIQVIRPLIHIRERQSIDFVQSQNIKTAPD 196 >gi|34558096|ref|NP_907911.1| hypothetical protein WS1792 [Wolinella succinogenes DSM 1740] gi|34483814|emb|CAE10811.1| conserved hypothetical protein-Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Wolinella succinogenes] Length = 248 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS+ L L + F K +F A++VD+ + E + Y+ + C+ Sbjct: 28 VLVGLSGGKDSLLLATLLARLARHAPF-KFEFKALTVDYGIGE----DFSYLQNYCAENG 82 Query: 82 IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I H V + K + + +R R AL S+ + L + H DD E Sbjct: 83 IPHEVFKTNIMEVMQEKRRENSSYCSFCSRLRRGALYSKALEGGYNKLAL-GHHLDDAAE 141 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNIS--WCE 190 + +M + A + M I N LW+ RP + R + F+L+ N+ C Sbjct: 142 SFFMNFSYNGAIRSM------PPIYRAYNGLWVIRPLIWLRERQMVDFVLKNNLQTPLCN 195 Query: 191 DPSNTDD-RFERVRVRRFVRDID 212 P+ D F R + ++ ++ ++ Sbjct: 196 CPAQHDKPPFAREQTKKMLQKME 218 >gi|22711981|ref|NP_683805.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum] gi|61216673|sp|Q8M9Y1|TILS_CHAGL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22416985|gb|AAM96585.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum] Length = 341 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 41/217 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG DS+ LL L S+L + K K S I DH +K++ ++ V ++ Sbjct: 28 ILIAISGGQDSIVLLKIL-SILQIQ--WKWKLSIIYCDHQWNIYSKNQAFHLYKVSFQMG 84 Query: 82 IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---- 135 I H V KP +AR RY++ A +I+TAH+ D++ET Sbjct: 85 IPFYHGVTI----KPLRT-EKSARIWRYSVFQRIASISKFNVIVTAHSSTDRVETFLYNL 139 Query: 136 -------------------------YMRSQRDYAEKGMGLSGMCDTILY-DLN-LWISRP 168 + RS++ + K + L Y D N L + RP Sbjct: 140 FRGTGVQGLQSLTWKKNIQFEILPNFARSKKSFDLKILSLESKNGIQTYSDYNKLQLIRP 199 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L R ++ F N+ D +N + R R+R Sbjct: 200 LLNITRTELGKFCSNENLPLWPDLTNYNLSIIRNRIR 236 >gi|312136595|ref|YP_004003932.1| pp-loop domain protein [Methanothermus fervidus DSM 2088] gi|311224314|gb|ADP77170.1| PP-loop domain protein [Methanothermus fervidus DSM 2088] Length = 306 Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L VSGG DS+ +L L ++L +R G I+ ++VD ++ + + RL Sbjct: 51 VLAGVSGGKDSVAMLDIL-NILHER--GIIELEVLTVDEGIKNYREKTLEIAKYHTKRLG 107 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H +V +K+ S + G R + ++ K + A I AH DD Sbjct: 108 IPHHIVKFKDCFGITLDEIVSSNVERGPCTYCGVFRRWIFNKIGKKLEADKIAIAHNLDD 167 Query: 131 QLETVYM 137 + E + M Sbjct: 168 ETEAILM 174 >gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jostii RHA1] gi|123144654|sp|Q0S8E7|TILS_RHOSR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|110820905|gb|ABG96189.1| possible cell cycle protein [Rhodococcus jostii RHA1] Length = 325 Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM YD W RP L RR R Sbjct: 119 VLLGHTLDDQAETVLLGLSR--GSGGRSIWGMS---AYD-TPW-GRPLLDVRRALTRQAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + +S EDP N F RVR+R V Sbjct: 172 AELGLSPHEDPHNASPDFVRVRLRTEV 198 >gi|167746732|ref|ZP_02418859.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662] gi|167653692|gb|EDR97821.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662] Length = 244 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ +L AL + R F K + I+VD ++ V +C Sbjct: 26 IAVGISGGKDSLTMLYALAHL---RIFYPNKFEIHGITVDLGF---GNFDITQVEKLCEE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L++ ++VV + + +T + + R ++E K + + AH DD +E Sbjct: 80 LKVPYTVVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGCNKVAYAHHKDDLVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 T M M G T L ++L + RP + D+ F + N+ Sbjct: 140 TFLM---------SMLFEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIGFKNKMNLPV 190 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 + P D +R + ++ +D Sbjct: 191 EKSPCPMDGYTKRQYAKETLKKLD 214 >gi|291533245|emb|CBL06358.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Megamonas hypermegale ART12/1] Length = 258 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 12/195 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ + AL + L + AI+++ + E + C +L Sbjct: 28 ILIGLSGGKDSLFMAYAL-TELKNTLKKNFTLGAITINPMFTKDFSCEA--MQKFCDKLN 84 Query: 82 IA---HSVVSWKNSKPQTGLMAAAREA--RYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H V + Q A A R I+ +AK I AH DD +ET + Sbjct: 85 MPYHIHEVNIAETIANQDNKNACYSCAFFRRGAINGYAKEHGYNKIAYAHNHDDAVETFF 144 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + G + M T L ++ + RP L R E+IR+ L C P + Sbjct: 145 M----NLFYSGQLKTFMPSTYLSRSDVTVIRPLLYFREEEIRNALSLHGQEPCAPPCPFN 200 Query: 197 DRFERVRVRRFVRDI 211 R + + + ++ Sbjct: 201 GNTMRQKAKNLIEEL 215 >gi|125974666|ref|YP_001038576.1| ATPase [Clostridium thermocellum ATCC 27405] gi|125714891|gb|ABN53383.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Clostridium thermocellum ATCC 27405] gi|316941791|gb|ADU75825.1| PP-loop domain protein [Clostridium thermocellum DSM 1313] Length = 237 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 24/199 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL+AL + ++F +KF AI++ + E VR ++C R Sbjct: 27 IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 80 Query: 80 LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + ++++V + ++ K + A R AL AK + + AH DD + Sbjct: 81 IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMDDVI 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + Y + S + T L L++ RP + + ++ F+ NI +P Sbjct: 140 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 195 Query: 193 SNTDDRFERVRVRRFVRDI 211 + + R++++D+ Sbjct: 196 CPANGYTK----RQYIKDL 210 >gi|315453138|ref|YP_004073408.1| putative PP-loop family protein [Helicobacter felis ATCC 49179] gi|315132190|emb|CBY82818.1| Putative PP-loop family protein [Helicobacter felis ATCC 49179] Length = 256 Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS+ L L + + F +F AI+V + L E ++ ++S +C+ Sbjct: 29 ILVGLSGGKDSILLSCLLARMRAHAPFN-FEFKAITVHYGLNE----DLEWLSQLCTEQN 83 Query: 82 IAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + +V + + Q+ + R ++ +A + AH DD +E+ Sbjct: 84 IPYEIVRTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALENGYNKLALAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +M ++ G L M + L++ RP + R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIPTAPD 195 >gi|261343943|ref|ZP_05971588.1| PP-loop family protein [Providencia rustigianii DSM 4541] gi|282568332|gb|EFB73867.1| PP-loop family protein [Providencia rustigianii DSM 4541] Length = 304 Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L S+ + I FS ++V+ ++ E Y+ ++ Sbjct: 37 IMVCLSGGKDSYTLLAILQSL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLDELGV 93 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 94 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F + P N Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKGFPII--PCN 206 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227 >gi|119872527|ref|YP_930534.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673935|gb|ABL88191.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184] Length = 330 Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 25/144 (17%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69 L+ P ++ VA+SGG DS+ LL L L +K A +++ C +K E Sbjct: 45 LIKPGDYVAVAISGGKDSLVLLYILGKFLQRNLLKDVKIEAFTINEGHPYSCFYRMSKRE 104 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121 YV ++ S+ I ++V +K+ T + A ++ H TI+ L Sbjct: 105 --YVKELASKFGIEYNVYHFKDIFGVTAIELAESLSKRGH-EVHMCTIDGVLRRRAMNII 161 Query: 122 --------IMTAHTFDDQLETVYM 137 I TAH DD+ +TV M Sbjct: 162 GRRRGWTKIATAHNLDDEAQTVLM 185 >gi|317471540|ref|ZP_07930890.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA] gi|316900988|gb|EFV22952.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA] Length = 244 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ +L AL + R F K + I+VD ++ V +C Sbjct: 26 IAVGISGGKDSLTMLYALAQL---RIFYPNKFEIHGITVDLGF---GNFDISQVEKLCEE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L++ +++V + + +T + + R ++E K + + AH DD +E Sbjct: 80 LKVPYTIVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGCNKVAYAHHKDDLVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 T M M G T L ++L + RP + D+ F + N+ Sbjct: 140 TFLM---------SMLFEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIGFKNKMNLPV 190 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 + P D +R + ++ +D Sbjct: 191 EKSPCPMDGYTKRQYAKETLKKLD 214 >gi|168182078|ref|ZP_02616742.1| PP-loop family protein [Clostridium botulinum Bf] gi|182674947|gb|EDT86908.1| PP-loop family protein [Clostridium botulinum Bf] Length = 249 Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT + H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVS---KSIGATKVALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + K S D D + I RP + R + I+ + + N+ + P D Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDMVKKYNLPVVKSPCPED 203 Query: 197 DRFERVRVRRFV 208 + R ++ + Sbjct: 204 KKTTREEMKNLM 215 >gi|320100819|ref|YP_004176411.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753171|gb|ADV64929.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162] Length = 339 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 17/132 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI+VAVSGG DSM LL L + R + +A+ VD + + +R ++ Sbjct: 50 HIIVAVSGGKDSMALLHFLRKL--SRKIPGWRITAVLVDEGISGYREKTIRNLAKYAEEN 107 Query: 81 RIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATLIMTA 125 + + V S+K T ++ R R ++++ A+ + T+I TA Sbjct: 108 GVEYRVASFKEYIGATLDEIVEKGRSRGLPYLPCSYCGVFRRYVLNKAARELGGTVIATA 167 Query: 126 HTFDDQLETVYM 137 H DD ++T M Sbjct: 168 HNMDDVVQTFIM 179 >gi|260772837|ref|ZP_05881753.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii CIP 69.14] gi|260611976|gb|EEX37179.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii CIP 69.14] Length = 310 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 15/170 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I FS I+V+ ++ E Y+ ++ Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPITFSLIAVNLDQKQPGFPEHILPEYLQELGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD +ET Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRAAKELGATKIALGHHRDDIIET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +++ KGM + D + + RP CR +DI + R Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIIKYANHR 204 >gi|149925083|ref|ZP_01913396.1| PP-loop [Plesiocystis pacifica SIR-1] gi|149814054|gb|EDM73685.1| PP-loop [Plesiocystis pacifica SIR-1] Length = 287 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 28/207 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVR-YVSDVC 77 H++VAVSGG DS LL L VL+ RS I F +A+ +D +R ++ D Sbjct: 33 HVMVAVSGGKDSYTLLDLL--VLA-RSRAPIDFQITAVHLDQVQPGYDGSPLRTWLEDFR 89 Query: 78 SRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 R ++ + + P A R ++ A+ + I H DD Sbjct: 90 GRTKVDFEIAQEDTYTTVVDLTPPGKAYCAVCSRLRRGVLYNVAERLGCNKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ M YA K + T D+ + RP + C DI + SW + Sbjct: 150 ALETLLMNLF--YAGKLQAMPAKYTT--DDVRFEVIRPLIECAEADI-----IEHASWAK 200 Query: 191 DP------SNTDDRFERVRVRRFVRDI 211 P + D R ++RR + D+ Sbjct: 201 YPILPCNLCGSQDNLRREKMRRLIDDM 227 >gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] gi|258554315|gb|ACV77257.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] Length = 334 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG+DS+ L + + + + G+ +VDH L+ + D +++ RL Sbjct: 27 VVVACSGGADSLALTLGVLA-----AAGRRPVIGATVDHGLQPGSADRAAGCAELMRRLG 81 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------------IMTAHTF 128 + V GL AAAR ARY ++ A+ A ++ HT Sbjct: 82 CVQTHVLTVTVTGDGGLEAAARRARYGALAALAQVAAAAGGAAGPAASAVRVPVLLGHTA 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSFLLQRN 185 DDQ ETV + R + ++GM W RP L R + + + Sbjct: 142 DDQAETVLLGLARGSGPR--SIAGM--------RPWRAPWGRPLLALTRAQTEAAVHEAG 191 Query: 186 ISWCEDPSNTDDRFERVRVRR 206 + DP N D F RVR+RR Sbjct: 192 LIPWSDPHNADPAFTRVRLRR 212 >gi|269957764|ref|YP_003327553.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269306445|gb|ACZ31995.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 384 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 17/182 (9%) Query: 22 ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKF-----SAISVDHCLRETAKDEVRYVSD 75 +LVA SGGSDS+ L A+ H + + +A+ VDH L+ + D + Sbjct: 33 VLVACSGGSDSLALAAAVAHESRRVGRSVRSRGFAVRAAAVVVDHGLQPGSDDVAAAAAQ 92 Query: 76 VCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L + TGL AAR ARYA + A + A ++ HT DDQ E Sbjct: 93 QCRGLGLDPVVVRRVVVGHDGVTGLEDAARRARYAAFDDVAASTGAVAVLLGHTLDDQAE 152 Query: 134 TVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 V + R + L+G+ +Y RP L RR +R+ + + W +DP Sbjct: 153 QVLLGLARGSGAR--TLAGIPPARGIY------RRPLLGLRRAQLRAACAAQGLDWWDDP 204 Query: 193 SN 194 +N Sbjct: 205 TN 206 >gi|148557402|ref|YP_001264984.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1] gi|148502592|gb|ABQ70846.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1] Length = 319 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 16/191 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + +AVSGG DSM +L + R A +VDH LR A E V+ C+ Sbjct: 30 ARLGLAVSGGPDSMAMLHLAAAACPGR------VEAATVDHGLRAEAAAEAALVARACAA 83 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + H + +P + AAAR ARYA ++ A I TAH DDQ ET+ MR Sbjct: 84 LGVPHMTLRV-TVEPTASIQAAARRARYAALAAWAAGQGLPAIATAHHADDQAETLLMRL 142 Query: 140 QRDYAEKGMGLSGMCDT-ILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GLSG+ D+ + + RP L RR ++ + + + +DPSN D Sbjct: 143 AR-----GAGLSGLAGIRARRDIGGVLLVRPLLGWRRAELAAIVAA--VETVDDPSNADP 195 Query: 198 RFERVRVRRFV 208 R +R R + Sbjct: 196 RHDRTHARALL 206 >gi|229819197|ref|YP_002880723.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333] gi|259533670|sp|C5BYK3|TILS_BEUC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|229565110|gb|ACQ78961.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333] Length = 330 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 7/146 (4%) Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + VDH L+ + + +D C L + VV G AAR ARYA + ++ Sbjct: 59 VVVDHALQAGSAEVAARAADQCRGLGLEARVVRVDVDIALGGPEGAARAARYAALEAASR 118 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +++ HT DDQ ETV +R R + L+GM +RPFL R Sbjct: 119 EAGDAVVLLGHTLDDQAETVLLRLARGSGAR--SLAGMPRR-----RGVFARPFLHLERA 171 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFER 201 +R + ++ EDP+N D R Sbjct: 172 RLREVVDAVGLTPWEDPTNAVDGPAR 197 >gi|322378687|ref|ZP_08053120.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1] gi|322380182|ref|ZP_08054417.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5] gi|321147397|gb|EFX42062.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5] gi|321148904|gb|EFX43371.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1] Length = 256 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 17/177 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ LL L + + + F A +V + L+E ++ ++SD+C Sbjct: 29 ILIGLSGGKDSI-LLSCLLARMQAHAPFNFTFQAATVHYGLKE----DLAWLSDLCVEQN 83 Query: 82 IAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H+++ + + Q+ + R ++ +A + AH DD +E+ Sbjct: 84 IPHTILYTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALEHGYNKLALAHHLDDAVES 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +M ++ G L M + L++ RP + R F+ +NI D Sbjct: 144 FFM----NFTYNG-SLRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIPTAPD 195 >gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS] Length = 812 Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 8/133 (6%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 VSGG DSM L ++ + + A VDH RE + DE V+ + + Sbjct: 44 VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKVAGWIKSMGLKSQ 103 Query: 86 VVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V++ W K+ AR RY + T N + H DD +ET +R Sbjct: 104 VLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNVETALLRL 163 Query: 140 QRDYAEKGMGLSG 152 + + GL+G Sbjct: 164 AQGHGR--FGLAG 174 >gi|295688126|ref|YP_003591819.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756] gi|295430029|gb|ADG09201.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756] Length = 408 Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust. Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 10/180 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + V SGG DS+ LL A ++ R G+ A+ VDH L+ D R+ + + Sbjct: 21 APLAVGFSGGGDSLFLLKA--ALDWARPSGRPVL-ALVVDHRLQ---ADSARWTAQAVEK 74 Query: 80 LRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R + ++W KP GL AAAR AR+AL++E A+ A +++ HT D E+ Sbjct: 75 ARALGAEARALAWTGPKPAAGLPAAARRARHALLAEAAREAGAKVLLLGHTASDLAESAA 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR++ S ++++ RP L R +IR+ L +W EDP+N D Sbjct: 135 MRAEGSTVPDPRAWS-PSPVWPEGRDVFLLRPLLFLTRGEIRAALAAEGQTWLEDPANVD 193 >gi|124112132|ref|YP_001019116.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus] gi|124012239|gb|ABM87973.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus] Length = 345 Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 15/197 (7%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L P IL+A SGG DS+ L+ L+ + S ++ + DH + + + Sbjct: 36 RRLFKPNQRILIAASGGQDSICLIKILNQLKSQWNW---QLGIAHCDHLWQIDSFYAASH 92 Query: 73 VSDVCSRLRI-AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VS + L I + ++ K N++ + AR RY ++ + A + + T I+TAHT Sbjct: 93 VSQLAENLNIDYYQCITTKVFNNEEK------ARLWRYKILEQIASSHDYTAIVTAHTAS 146 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D+ ET R GL + + I RP L R ++ Q + Sbjct: 147 DRTETFLYNLLRGTGPD--GLQSLSWKRKLKSGIRIIRPLLSTTRFELTVLAKQLQMPLW 204 Query: 190 EDPSNTDDRFERVRVRR 206 D SN D F+R +R+ Sbjct: 205 PDKSNQDLFFKRNLIRK 221 >gi|148652148|ref|YP_001279241.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1] gi|172048461|sp|A5WCA0|TILS_PSYWF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148571232|gb|ABQ93291.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1] Length = 525 Score = 42.7 bits (99), Expect = 0.098, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 22/187 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 + +A SGG DS+GL + ++ G++ F I V+H ++ + + V+ + Sbjct: 27 VWLACSGGRDSLGLALLCRTLFDQ---GRLPFLPQLIHVNHGMQAANDEWAQQVAQWAQQ 83 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A ++ + AAR+ RY + + + +++ H DDQ+ET+ MR Sbjct: 84 HDMACQIIGLNLTHKSE---QAARDGRYQAMMQLMNQDD--VLILGHHQDDQVETLLMRL 138 Query: 140 QRDYAEKGMG-----LSGMCDTILY--DLN-----LWISRPFLRCRREDIRSFLLQRNIS 187 G+G S T D+N +++ RP+L R+ I + + N+ Sbjct: 139 FNGAGVTGLGAMREWTSKQAHTAQSPPDVNKPRQRIFLWRPWLEISRDQITEYAQRHNLK 198 Query: 188 WCEDPSN 194 + +DP+N Sbjct: 199 YIDDPTN 205 >gi|32266754|ref|NP_860786.1| hypothetical protein HH1255 [Helicobacter hepaticus ATCC 51449] gi|61216602|sp|Q7VGR5|TILS_HELHP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|32262806|gb|AAP77852.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 423 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 73/194 (37%), Gaps = 29/194 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81 L+ S G DS L L +I F V + R A DEV Y ++ + Sbjct: 39 LLGFSSGVDSTALFFLLLEC-------EIPFDIAIVHYHTRLQADDEVAYAKELAATYNK 91 Query: 82 ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +AH+ + AR R+ + T ++ AH +D+LE + M+ Sbjct: 92 LCFVAHA------PHFNANFESNARSFRFDFFQSLIIKHHYTHLLLAHQLNDRLEWLLMQ 145 Query: 139 SQRDYAEKGMGLS---GMCDT-ILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCED 191 KG GL G D YD N I RP + ++ F +R I + ED Sbjct: 146 -----LTKGAGLGNLLGFADERYNYDKSLNNYTIVRPLESIPKNELYRFCKERGIKYFED 200 Query: 192 PSNTDDRFERVRVR 205 SN D F R R Sbjct: 201 SSNQDKTFRRNYFR 214 >gi|160938841|ref|ZP_02086192.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC BAA-613] gi|158437804|gb|EDP15564.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC BAA-613] Length = 241 Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 18/195 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LH++ R F K + AI+VD L ++ V+ +C Sbjct: 26 IAIGVSGGKDSL---TLLHALHHLRRFYPEKYELCAITVDLGL---GNMDLEPVAAMCRE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + ++S + + + +T + + R ++E AK + I AH DD +E Sbjct: 80 FEIPYEIISTEIGAVLFDIRKETNPCSLCAKMRKGALNEKAKEMGCNKIAYAHHRDDVIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ M Y + S + T L ++L + RP + D+ F + + C++P Sbjct: 140 TMMM--SLFYEGRFHSFSPL--TYLDRMDLTVIRPMIFVTEADVIGFRNKYQLPVCKNPC 195 Query: 194 NTDDRFERVRVRRFV 208 D +R ++ + Sbjct: 196 PMDGYTKRQYIKELI 210 >gi|159126807|gb|EDP51923.1| PP-loop family protein [Aspergillus fumigatus A1163] Length = 661 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +AVSGG+DSM L + + +A VDH RE + E R V+ S Sbjct: 45 PRNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLS 104 Query: 79 RL-RIAHSVVSWKNSKPQTGLMAA------------------AREARYALISEHAKTINA 119 + + +V+ + TGL A AR R+ + + Sbjct: 105 DMGKPDDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRI 164 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM 153 + ++ H DD +ET R +G GL+G+ Sbjct: 165 SALLMGHHQDDNVETTLWR--LCTGARGAGLAGI 196 >gi|148906402|gb|ABR16355.1| unknown [Picea sitchensis] Length = 410 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 28/199 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ILVAVSGG DS+ LL L + + K + DH +++ + +V+ V + Sbjct: 91 ILVAVSGGQDSICLLWMLSQLQQSWEW---KVGVVHCDHQWNPQSSAAQASHVAHVAREM 147 Query: 81 RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + S P AR RY ++ A +++TAHT D++ET+ Sbjct: 148 G-----YDFYQSLPTMDAFGETRARTWRYGVLHRIALRHAYDVVITAHTASDRIETLLHN 202 Query: 139 SQRDYAEKGMGLSGMCD---------TILYD---LNLWISRPFLRCRREDIRSFLLQRNI 186 R G GL GM + Y ++ + RP L R ++R + Sbjct: 203 LFR-----GTGLQGMQSLTWTREFRVRVPYHKPYKHVRLVRPLLDTTRTELRKLCETLQL 257 Query: 187 SWCEDPSNTDDRFERVRVR 205 DPSN + R R+R Sbjct: 258 PLWPDPSNFNLEINRNRIR 276 >gi|254434620|ref|ZP_05048128.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27] gi|207090953|gb|EDZ68224.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27] Length = 304 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 17/167 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS LL L LS + +KF I+V+ ++ E Y+ + Sbjct: 41 LMVCLSGGKDSYALLDIL---LSLQKHAPVKFDLIAVNLDQKQPGFPEHVLPHYLESLGV 97 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI +SVV + +T +R R ++ A+ + AT I H DD LET Sbjct: 98 SYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEELGATKIALGHHRDDILET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180 ++ G L GM +L D I RP CR +D+ ++ Sbjct: 157 FFLN-----MFHGGTLKGMPPKLLSDNGRHIVIRPLAYCREKDLETY 198 >gi|33592954|ref|NP_880598.1| hypothetical protein BP1912 [Bordetella pertussis Tohama I] gi|61216607|sp|Q7VX92|TILS_BORPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33572602|emb|CAE42194.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382366|gb|AEE67213.1| hypothetical protein BPTD_1884 [Bordetella pertussis CS] Length = 321 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 7/113 (6%) Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ AAAR ARY ++ A+ I+ AH +DQ ETV +R R +GM + M Sbjct: 87 GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPF 144 Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205 D ++ RP+L I + ++ W +DP+NTD R+ R VR Sbjct: 145 SERDGVAYL-RPWLDVDHAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 196 >gi|169335606|ref|ZP_02862799.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM 17244] gi|169258344|gb|EDS72310.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM 17244] Length = 234 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 10/120 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVR-YVSDVC 77 HI VAVSGG DSM LL AL + + F +KF +AIS+D +++R + SD+ Sbjct: 23 HICVAVSGGKDSMILLKALRTFM---YFSPVKFKLTAISIDVGFDNMDFEKLRVFCSDLD 79 Query: 78 SRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L+I + ++ + K + ++ R AL +E A +I + I H DD +E+ Sbjct: 80 IPLKIVKTDIAKIVFDERKEKNPCSLCSKMKRAAL-NETALSIGSNKIAYGHHRDDFIES 138 >gi|260655018|ref|ZP_05860506.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1] gi|260630333|gb|EEX48527.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1] Length = 281 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 44/249 (17%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY 72 L++P I V +SGG DS LL AL + + + +KF+ A++VD + R Sbjct: 31 LIHPGDRIAVGLSGGKDSSLLLYALACM---KRWSPVKFTLQALTVDMT---DGNWDTRP 84 Query: 73 VSDVCSRLRIAHSVVSW--------KNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ +C L + + VV++ +N + A R ++ A+ + + Sbjct: 85 MAALCDMLDVPYQVVTFPVVSAIEGRNERSPCSFCANIRRG---ILDGTARQLGCNSVAL 141 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL-----RCRREDIR 178 H DD +ETV M R G + D + +W+ RP + + R E+ R Sbjct: 142 GHHLDDTVETVLMNLFR-----GGRFRAYLPRLYQDRSQVWVIRPLVYLTERQVRLENER 196 Query: 179 SFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 L + ++S+ C S+T ER R + VR ++ + F L+ V +A+ L Sbjct: 197 LGLTRFHLSYTCPFSSDT----ERARTKELVRKLE--------ETFPSLKSNVQHALETL 244 Query: 238 IPKYLTVHM 246 L H+ Sbjct: 245 TEDDLWRHV 253 >gi|220930764|ref|YP_002507673.1| PP-loop domain protein [Clostridium cellulolyticum H10] gi|220001092|gb|ACL77693.1| PP-loop domain protein [Clostridium cellulolyticum H10] Length = 239 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 20/199 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DSM LL AL L + K + AIS+ + + V + C ++ Sbjct: 27 IAVGVSGGKDSMTLLTALRQ-LQNFYPKKFELEAISLTMGI---GNADFTPVVEYCKKIG 82 Query: 82 IAHS---------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + ++ + +N K + A R R AL ++ AKT+ + H DD + Sbjct: 83 VNYTIEETLIGKIIFEVRNEKNPCSMCANLR--RGALHNK-AKTLGCNKVALGHHRDDAV 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + Y + S + T L +L++ RP + + I+S + ++ + P Sbjct: 140 ETLLLSTF--YEGRIHTFSPV--TYLDRKDLYLIRPLIYTEEKQIKSVVKSESLPIVKSP 195 Query: 193 SNTDDRFERVRVRRFVRDI 211 + D + +R ++ + D+ Sbjct: 196 CHVDGKTKRQFIKDLILDL 214 >gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] gi|118163708|gb|ABK64605.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] Length = 320 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G G+ + +D W RP L RR + Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGVRSIAGMRPHDPP-WC-RPLLGQRRAVTHAAC 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ +DP N+D RF R R+R V Sbjct: 169 AELGLTAWQDPHNSDRRFTRARLRAEV 195 >gi|156047811|ref|XP_001589873.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980] gi|154693990|gb|EDN93728.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980 UF-70] Length = 587 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 33/138 (23%) Query: 26 VSGGSDSMGL----------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 VSGG DSM L I S KI F AI V+H +R+ + +E + V Sbjct: 37 VSGGVDSMALAALCMQMKNNYIPFASDGYPIHLNKIDFRAIIVNHGVRDGSLEEAQKVMK 96 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 V L AR+ R+ I ++ + + ++ H DDQ ETV Sbjct: 97 VLESL---------------------ARKYRFQAIGKYCQKSDINSLLLGHHSDDQAETV 135 Query: 136 YMRSQRDYAEKGMGLSGM 153 MR + G GL G+ Sbjct: 136 VMRLAK--GALGAGLLGI 151 >gi|77165079|ref|YP_343604.1| ATPase [Nitrosococcus oceani ATCC 19707] gi|123594216|sp|Q3JAS2|TTCA_NITOC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|76883393|gb|ABA58074.1| tRNA s(2)C-32 sulfurtransferase [Nitrosococcus oceani ATCC 19707] Length = 302 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 17/167 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS LL L LS + +KF I+V+ ++ E Y+ + Sbjct: 39 LMVCLSGGKDSYALLDIL---LSLQKHAPVKFDLIAVNLDQKQPGFPEHVLPHYLESLGV 95 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI +SVV + +T +R R ++ A+ + AT I H DD LET Sbjct: 96 SYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEELGATKIALGHHRDDILET 154 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180 ++ G L GM +L D I RP CR +D+ ++ Sbjct: 155 FFLN-----MFHGGTLKGMPPKLLSDNGRHIVIRPLAYCREKDLETY 196 >gi|326422516|gb|EGD71912.1| PP-loop domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 301 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 14/135 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS+ LL L + + +I++D ++ + + C Sbjct: 48 VAVANSGGKDSLSLLYILAKYFKKNN----EIVSITIDEGIKGYRDKTIEIMKRYCDEYG 103 Query: 82 IAHSVVSWKNSKPQT---------GL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + + S+K+ +T G+ AA R LI+ AK A + TAH DD+ Sbjct: 104 IKYKIYSYKDLTGKTMDYIASLKKGIPCAACGVLRRYLINYAAKDNKADKLATAHNLDDE 163 Query: 132 LETVYMRSQRDYAEK 146 E V M ++ EK Sbjct: 164 AENVIMNLVQNDVEK 178 >gi|306813631|ref|ZP_07447812.1| C32 tRNA thiolase [Escherichia coli NC101] gi|305852905|gb|EFM53350.1| C32 tRNA thiolase [Escherichia coli NC101] Length = 311 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 V++ KGM M D D + RP CR +DI+ F Sbjct: 158 VFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|148381240|ref|YP_001255781.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502] gi|153931301|ref|YP_001385615.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|153937030|ref|YP_001389021.1| PP-loop family protein [Clostridium botulinum A str. Hall] gi|148290724|emb|CAL84855.1| putative ATP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927345|gb|ABS32845.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|152932944|gb|ABS38443.1| PP-loop family protein [Clostridium botulinum A str. Hall] Length = 249 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLNMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT I H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + K S D D + I RP + R + I++ + + N+ + D Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKNLVKKHNLPVVKSTCPED 203 Query: 197 DRFERVRVRRFV 208 + R ++ + Sbjct: 204 KKTTREEMKNLM 215 >gi|323357530|ref|YP_004223926.1| ATPase PP-loop [Microbacterium testaceum StLB037] gi|323273901|dbj|BAJ74046.1| predicted ATPase of the PP-loop superfamily [Microbacterium testaceum StLB037] Length = 332 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 8/205 (3%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR VR+ + ++VA+SGG DS L + + I+ A+ +DH L+ Sbjct: 11 VAEVRRAVRAALERIDGSVVVALSGGPDS---LALAAATAFEAPRAGIRAEAVVIDHGLQ 67 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + ++ L + VV+ + G AAAREARYA ++ A I A ++ Sbjct: 68 DGSDAVAAAAAEKARALGLDARVVTVQVGS-GDGPEAAAREARYAGLARAAADIRADAVL 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ETV + R LSGM RP L RR + Sbjct: 127 LGHTLDDQAETVLLGLARGAG--AASLSGMAPERRDATGPTWVRPLLAVRRRVTVAACAA 184 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 + DP N D + RVRVR V Sbjct: 185 EGLDPWTDPHNADPAYTRVRVRERV 209 >gi|20807962|ref|NP_623133.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|20516534|gb|AAM24737.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 235 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 18/199 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--------EVRYV 73 I V VSGG DS+ LL LH + + F IKF + + L D E + + Sbjct: 24 IAVGVSGGKDSITLLYGLHLL---KRFYPIKFEVMGLMLSLGFENFDPTPIKNFCEEKGI 80 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I V ++ K L A R R AL ++ AK + AH +DD + Sbjct: 81 PFFVKHTEIKKIVFDYRKEKNPCSLCANLR--RGAL-NDFAKEKGCNKVALAHHYDDLIV 137 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M + G + T L + + RP + R +++RS + + N+ E+P Sbjct: 138 TFMM----NLFYNGRLHTFEPVTFLDRSKITLIRPLIYVREKEVRSAVKKNNLPVVENPC 193 Query: 194 NTDDRFERVRVRRFVRDID 212 R + +R+++ Sbjct: 194 PMAGNTTRHSIENLIRNLE 212 >gi|312137453|ref|YP_004004790.1| pp-loop domain protein [Methanothermus fervidus DSM 2088] gi|311225172|gb|ADP78028.1| PP-loop domain protein [Methanothermus fervidus DSM 2088] Length = 297 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 14/126 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ L AL ++ ++ +F K +AI +D ++ K+ ++Y+ +L Sbjct: 43 ISVALSGGKDSLLTLYALKNLQNEINF---KLNAIFIDEGIKNYRKNALKYLRKHVKKLE 99 Query: 82 IAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + S+K T + RY L+++ A + A+ + T H DD+ Sbjct: 100 VELIKKSFKEEFGFKVDEIKDYFDTPCIPCGIFRRY-LLNKTAYEVGASKLATGHNLDDE 158 Query: 132 LETVYM 137 +++ M Sbjct: 159 IQSFLM 164 >gi|82776711|ref|YP_403060.1| C32 tRNA thiolase [Shigella dysenteriae Sd197] gi|309788962|ref|ZP_07683557.1| PP-loop family protein [Shigella dysenteriae 1617] gi|123562717|sp|Q32GI6|TTCA_SHIDS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|81240859|gb|ABB61569.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923233|gb|EFP68745.1| PP-loop family protein [Shigella dysenteriae 1617] Length = 311 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E + Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLLEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|88607318|ref|YP_505641.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88607616|ref|YP_505613.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88598381|gb|ABD43851.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88598679|gb|ABD44149.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] Length = 269 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Query: 147 GMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G G+ G+ +++ D+ I RP L R +I+ + +Q W EDPSN+D ++ R Sbjct: 3 GSGIDGLAGIRERSVIGDVT--IIRPLLDFTRREIQEYAIQHQQPWIEDPSNSDPKYRRT 60 Query: 203 RVRRFVRD 210 R F+ + Sbjct: 61 FYRNFINN 68 >gi|332678470|gb|AEE87599.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida Fx1] Length = 253 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 16/201 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+C Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLCVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDLH 214 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLALE 220 >gi|301025572|ref|ZP_07189095.1| PP-loop family protein [Escherichia coli MS 69-1] gi|300395892|gb|EFJ79430.1| PP-loop family protein [Escherichia coli MS 69-1] Length = 311 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDTLQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G G+ + +D W RP L RR + Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGVRSIAGMRPHDPP-WC-RPLLGQRRAVTHAAC 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + ++ +DP N+D RF R R+R V Sbjct: 169 AELGLTAWQDPHNSDRRFTRARLRAEV 195 >gi|227111869|ref|ZP_03825525.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257 >gi|156933849|ref|YP_001437764.1| C32 tRNA thiolase [Cronobacter sakazakii ATCC BAA-894] gi|205830588|sp|A7MLI7|TTCA_ENTS8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|156532103|gb|ABU76929.1| hypothetical protein ESA_01675 [Cronobacter sakazakii ATCC BAA-894] Length = 310 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+S + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLSSLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|227326371|ref|ZP_03830395.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 MFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257 >gi|296102189|ref|YP_003612335.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056648|gb|ADF61386.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 311 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + +KFS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVKFSLVAVNLDQKQPGFPEHILPEYLDKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|50120922|ref|YP_050089.1| C32 tRNA thiolase [Pectobacterium atrosepticum SCRI1043] gi|81645225|sp|Q6D5P6|TTCA_ERWCT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|49611448|emb|CAG74896.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E +Y+ ++ Sbjct: 42 IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPQYLDNIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232 >gi|219851846|ref|YP_002466278.1| PP-loop domain protein [Methanosphaerula palustris E1-9c] gi|219546105|gb|ACL16555.1| PP-loop domain protein [Methanosphaerula palustris E1-9c] Length = 304 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS LL ++ +L R+ ++ AI+VD +R+ + + + RL Sbjct: 50 IAVALSGGKDSTVLLWLMNMLLGKRAADRL--VAITVDEGIRDYRDETLAAARRLTHRLG 107 Query: 82 IAHSVVSWKN--SKPQTGLMAAAREA--------RYALISEHAKTINATLIMTAHTFDDQ 131 I H +VS+++ L+ RE R + + A A ++ T H DD+ Sbjct: 108 IRHIIVSFQDLFGADLDSLLIGNRERACSVCGVYRRQALQQTAVEAGAGVLATGHCLDDE 167 Query: 132 LETVYM 137 ++V M Sbjct: 168 AQSVLM 173 >gi|283785362|ref|YP_003365227.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter rodentium ICC168] gi|282948816|emb|CBG88417.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter rodentium ICC168] Length = 311 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I+FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPIRFSLVAVNLDQKQPGFPEHILPEYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|26553959|ref|NP_757893.1| hypothetical protein MYPE5070 [Mycoplasma penetrans HF-2] gi|26453967|dbj|BAC44297.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 264 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%) Query: 22 ILVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77 I V VSGG DSM +L AL ++ I I + L D + +Y +D+ Sbjct: 24 IAVGVSGGKDSMLMLKALSIYKKIVKSELNWDIDVVGIHLKMNLCHIEYDPIIKYWNDMG 83 Query: 78 SRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + + K K Q L + ++A ++ + AK +N + H DD Sbjct: 84 INFKVVETTMGEILRGQIKKGKIQCSLCSKLKKA---ILIDEAKKLNCNKVAMGHHADDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +ET +M + +G + L ++W RPF+ R +DI + N+ Sbjct: 141 IETFFM----NMINEGRIATFKPSMYLDRSDIWFIRPFIFAREKDIAKAANKENM 191 >gi|269128702|ref|YP_003302072.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183] gi|268313660|gb|ACZ00035.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183] Length = 335 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%) Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E A+ A +++ HT DDQ ETV + R + L+GM ++ RP Sbjct: 112 LDEAARRAGAAVLL-GHTLDDQAETVLLGLARGSGARS--LAGMPPRFQRGEICYM-RPL 167 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 L R R ++ +DP N D + RVR+RR V Sbjct: 168 LGLERATTRRACRAMGLTPWDDPHNEDPAYTRVRLRREV 206 >gi|183598903|ref|ZP_02960396.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827] gi|188021111|gb|EDU59151.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827] Length = 304 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L S+ + I FS ++V+ ++ E Y+ ++ Sbjct: 37 IMVCLSGGKDSYTLLSILQSL---QKSAPISFSLVAVNLDQKQPGFPEHILPEYLENLGI 93 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 94 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI + Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 194 >gi|223998234|ref|XP_002288790.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975898|gb|EED94226.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 613 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 25/173 (14%) Query: 122 IMTAHTFDDQLETVYMRSQR----------DYAEKGMGLSGMCDTILYD------LNLWI 165 I+TAH DD ET+ ++ R D G L + D + Sbjct: 231 ILTAHHRDDVDETILLKLLRGSHLTNLWGMDARSDGFDLLALHDNDTVSKSPASTFTGYF 290 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI------DLHALYLK 219 ++P L R+ D+ +L ++I W ED SN ++++R ++R V + AL + Sbjct: 291 AKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKRNKIRNEVMPLLKELAGGEDALQKR 350 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 ++ ++ + KYL + M S IL DST+LF L R A Sbjct: 351 FSNLEEQSRAISQHLLNRAEKYL-LDMPSNSVFHLTIL--DSTILFDLEREEA 400 >gi|298704809|emb|CBJ48957.1| conserved unknown protein [Ectocarpus siliculosus] Length = 542 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 15/89 (16%) Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR----CRRED 176 +I TAH DDQ ETV +++ R + GM W S PF+R + + Sbjct: 149 VIATAHHKDDQTETVLLKALR--GAHITNIQGMA---------WHSDPFVRPLLGAHKTE 197 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + FL++ +W ED SN ++ R RVR Sbjct: 198 LLDFLVRGRHAWREDGSNQVAKYARNRVR 226 >gi|296133881|ref|YP_003641128.1| PP-loop domain protein [Thermincola sp. JR] gi|296032459|gb|ADG83227.1| PP-loop domain protein [Thermincola potens JR] Length = 261 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P IL+ +SGG DS L+ AL + F K AI++D L T K + + + Sbjct: 21 ELVEPNDRILIGLSGGKDSAFLVYALGVLRRHFPF-KFDIGAITID--LGFTDKFDRQPL 77 Query: 74 SDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 D C RL + + S Q AA R +IS A+ + AH Sbjct: 78 EDFCRRLDVPFFFEKTQIAEIAFSPSQPNPCAACAFFRKGIISACARAEGFNKVAFAHHL 137 Query: 129 DDQLETVYM 137 DD +ET M Sbjct: 138 DDAVETFLM 146 >gi|170768722|ref|ZP_02903175.1| protein YdaO [Escherichia albertii TW07627] gi|170122270|gb|EDS91201.1| protein YdaO [Escherichia albertii TW07627] Length = 311 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHVLPKYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|262275723|ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] gi|262219531|gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] Length = 308 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 41 IMVCLSGGKDSYTMLEILQSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 97 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 98 EYKIVEEDTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHHRDDMLET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM + D + + RP CR +DI + Sbjct: 157 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIERY 198 >gi|309701645|emb|CBJ00952.1| conserved hypothetical protein [Escherichia coli ETEC H10407] Length = 277 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 8 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 64 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 65 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 124 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 165 >gi|300819436|ref|ZP_07099632.1| PP-loop family protein [Escherichia coli MS 107-1] gi|300527935|gb|EFK48997.1| PP-loop family protein [Escherichia coli MS 107-1] Length = 243 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|328866572|gb|EGG14956.1| hypothetical protein DFA_10830 [Dictyostelium fasciculatum] Length = 682 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 87 VSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 + W + +P T + R R L++ AK N+ I+ DD +ET R Q +A Sbjct: 258 IEWGEEGQPLTAIQEICRYKRLELLTSVAKKFNSPAILMGTNKDDNIETFIHRIQ--FAS 315 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 GL+ + ++ + RP L ++ + IS+ D +N FER R+R Sbjct: 316 GIEGLASIEPISPLSASISLHRPLLTFSKDSLFGLCNHFGISFNHDTANDSLDFERNRIR 375 >gi|168185941|ref|ZP_02620576.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str. Eklund] gi|169296152|gb|EDS78285.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str. Eklund] Length = 239 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 15/177 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL L++ + F F +++ L A + + +C L Sbjct: 24 IAVGLSGGKDSITLLYLLNAY---KRFSPQPFELLAI--TLDPGAGADFTEMIRICKELS 78 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + + + + ++ + R +++HAK + + H +D +ET+ Sbjct: 79 VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKNDAIETL 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M +G + DT L +L I RP + ++I++ + NIS E+P Sbjct: 139 LM----SMFYEGRINTFSPDTYLSRSDLHIIRPMIYIDEQNIKTLIKNSNISIVENP 191 >gi|159030184|emb|CAO91076.1| tilS [Microcystis aeruginosa PCC 7806] Length = 324 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 7/153 (4%) Query: 56 ISVDHCLRETAKDE--VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH 113 +++ HC ++D V +V + ++ + + + P A AR+ RY + Sbjct: 56 LAIAHCDHRWSQDRGLVDHVRKIAEIWQLPVYIAT---APPMAETEAKARQWRYQALQTI 112 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ ++TAHT D+ ET R G+ ++ D +++ RP L Sbjct: 113 AQEQGFNYLLTAHTRSDRAETFLYNLTRGAGSDGLSALTWLTSLTPD--IFLVRPLLNVT 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 R + +F R + D +N + R+ R R+R+ Sbjct: 171 RGETFAFCQSRELPIWYDRANENLRYARNRIRQ 203 >gi|94502298|ref|ZP_01308777.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451150|gb|EAT14096.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 153 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 15/132 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76 I V+VS G DSM LL L + + I V HC +++ KDE+ ++ + Sbjct: 22 IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + +I ++ K + AR+ RY I H DD +ET + Sbjct: 72 CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131 Query: 137 MRSQRDYAEKGM 148 + R KG+ Sbjct: 132 INLIRGTGIKGL 143 >gi|168179056|ref|ZP_02613720.1| PP-loop family protein [Clostridium botulinum NCTC 2916] gi|226950722|ref|YP_002805813.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] gi|182670110|gb|EDT82086.1| PP-loop family protein [Clostridium botulinum NCTC 2916] gi|226842372|gb|ACO85038.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] Length = 249 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 19/195 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75 I VAVSGG DS+ LL L ++ + I+ AI VD L + + +++ + Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGL-DMDLEPLKFFCKKNSIDL 89 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 V + IA+ V + + K L + R+ +S K+I AT I H DD +ET+ Sbjct: 90 VIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETL 146 Query: 136 YMRSQRDYAEKGMGLSGMCD-TILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +M + +G G + I Y D + I RP + R + I+ + + N+ + Sbjct: 147 FMNVLK------IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTC 200 Query: 194 NTDDRFERVRVRRFV 208 D + R ++ + Sbjct: 201 PEDKKTTREEMKNLM 215 >gi|195941077|ref|ZP_03086459.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024] gi|295095744|emb|CBK84834.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 311 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ ++ Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLENLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|170780553|ref|YP_001708885.1| hypothetical protein CMS_0097 [Clavibacter michiganensis subsp. sepedonicus] gi|169155121|emb|CAQ00221.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 341 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCR 173 + + ++ AHT DDQ ETV + R L GM + + RP L R Sbjct: 125 RATGSRALLLAHTLDDQAETVLLGLAR--GSGAASLHGMARSTPARTAGAVHLRPLLGIR 182 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 R+ + + +DP N D + RVRVR V Sbjct: 183 AAITRAACADQGLDPWQDPHNADPSYARVRVRHDV 217 >gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocardia farcinica IFM 10152] gi|61216446|sp|Q5Z2W1|TILS_NOCFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54013860|dbj|BAD55230.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 318 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R + + GM W RP L RR D R Sbjct: 111 VLLGHTLDDQAETVLLGLARGSGARS--IRGMAAYT----PPW-GRPLLGVRRADTRRLC 163 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 ++ EDP N F RVR+R V Sbjct: 164 ADLGLTPHEDPHNRSAEFTRVRLRTEV 190 >gi|291277350|ref|YP_003517122.1| putative tRNA(Ile)-lysidine synthase TilS [Helicobacter mustelae 12198] gi|290964544|emb|CBG40397.1| putative tRNA(Ile)-lysidine synthase, TilS [Helicobacter mustelae 12198] Length = 331 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 26/190 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78 L+ SGG DS L L I F VD+ LRE + EV Y ++ + Sbjct: 13 LLGFSGGPDSTALFFCLLEE-------GIDFDMGIVDYGLREQSIKEVAYAKELAACYQK 65 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RL I ++ ++ + Q AR RY K ++ AH +D+LE M+ Sbjct: 66 RLFIHQALGIVRDFEHQ------ARVQRYGFFERIIKEEGYENLLLAHHLNDRLEWFIMQ 119 Query: 139 SQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 KG GL+ + + I RP L ++ I + +R + ED SN + Sbjct: 120 -----LCKGSGLNNLLGFRRREEREGYVIVRPLLEISKDQILEMVRKR--VYFEDSSNEN 172 Query: 197 DRFERVRVRR 206 R R ++R+ Sbjct: 173 TRIWRNKIRK 182 >gi|317491972|ref|ZP_07950406.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920093|gb|EFV41418.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 312 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 15/170 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEDILPAYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDMLQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +++ KGM M D D + RP CR +DI F R Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAR 203 >gi|294496034|ref|YP_003542527.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] gi|292667033|gb|ADE36882.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] Length = 305 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L L+ + R ++ AI+VD + + + Y + S + Sbjct: 55 IAVALSGGKDSCVALYILNKIFGKRR--DLELVAITVDEGISVYRERSIEYARKLTSDIG 112 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130 + H + S+ + + AA+E R +L++ A I A ++T H DD Sbjct: 113 VKHLIHSFADEYDTSLDELAAKERVHGACSYCGVLRKSLVNRIALDIGAKRLVTGHNLDD 172 Query: 131 QLETVYM 137 + +T+ M Sbjct: 173 EAQTIMM 179 >gi|320664063|gb|EFX31250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H7 str. LSU-61] Length = 303 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 34 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 90 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 91 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 150 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 191 >gi|320659159|gb|EFX26751.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O55:H7 str. USDA 5905] Length = 307 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 38 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 94 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 95 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 153 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 154 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 195 >gi|260887263|ref|ZP_05898526.1| ExsB family protein [Selenomonas sputigena ATCC 35185] gi|330838980|ref|YP_004413560.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185] gi|260863325|gb|EEX77825.1| ExsB family protein [Selenomonas sputigena ATCC 35185] gi|329746744|gb|AEC00101.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185] Length = 263 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 55/238 (23%), Positives = 85/238 (35%), Gaps = 37/238 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L AL ++L R A+++D E V ++ C + Sbjct: 28 ILIGISGGKDSIFLAYAL-AILQKRMKKNFSLCALTIDPQFTEDFP--VARIASFCEEIS 84 Query: 82 IAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I VS P+ R I+ +A+ + AH DD +ET+ Sbjct: 85 IPFEAVSVNIAGTIEETPEKNPCFTCAFFRRGAINRYAQEHGCNKVAYAHHNDDAVETLL 144 Query: 137 MRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 M G+ SG T L + + RP + R +IR + S Sbjct: 145 M---------GILYSGQIHTFTPKTYLDRSGITVIRPLVYFRESEIRDAIAVHGFSPIPS 195 Query: 192 PSNTDDRFERVRVRRFVRDID------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 P D R V+ + + H L M++ NAV L P+ T Sbjct: 196 PCPLDGTTMRQEVKELISSWEKKDPQIYHHLAASMRE---------NAVGELWPRMQT 244 >gi|330834210|ref|YP_004408938.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566349|gb|AEB94454.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] Length = 316 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 21/138 (15%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETAKDEVRY 72 ++L+ IL+AVSGG DS+ L L +++ + F+ + + RE D+VR Sbjct: 42 QNLLNANKILIAVSGGKDSLVLADTLSKIVNPNRI--VAFNIVEGIKGYNRE---DQVRE 96 Query: 73 VSDVCSRLRI-----------AHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTI 117 +S+ L I +++ S Q GL AA R LI+ + + Sbjct: 97 LSNYLKELGIDLISTSFEKSVGYTLDQMVKSSSQRGLNVAACTFCGGFRRKLINGAGREV 156 Query: 118 NATLIMTAHTFDDQLETV 135 NA + T H DD+++T+ Sbjct: 157 NADFVSTGHNLDDEVQTI 174 >gi|322807607|emb|CBZ05182.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum H04402 065] Length = 249 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 13/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT I H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + K S D D + I RP + R + I+ + + N+ + D Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCPED 203 Query: 197 DRFERVRVRRFV 208 + R ++ + Sbjct: 204 KKTTREEMKNLM 215 >gi|253688694|ref|YP_003017884.1| PP-loop domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259550629|sp|C6DJ78|TTCA_PECCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|251755272|gb|ACT13348.1| PP-loop domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSFTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257 >gi|194433858|ref|ZP_03066132.1| protein YdaO [Shigella dysenteriae 1012] gi|194417961|gb|EDX34056.1| protein YdaO [Shigella dysenteriae 1012] gi|332098106|gb|EGJ03079.1| PP-loop family protein [Shigella dysenteriae 155-74] Length = 311 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|330721907|gb|EGG99859.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC2047] Length = 282 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L ++ + +KF I+V+ ++ E Y+ + Sbjct: 39 VMVCLSGGKDSYTMLEILRNL---QQHAPVKFDIIAVNLDQKQPGFPEDVLPNYLESIDQ 95 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +SVV K + +T +R R +L A I AT I H DD +ET Sbjct: 96 PYFILEKDTYSVVKEKTPEGKTTCALCSRLRRGSLYG-FANEIGATKIALGHHRDDIMET 154 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180 +++ G L M +L D N+ I RP C+ DI++F Sbjct: 155 LFLNMFH-----GGKLKAMPPKLLSDDKKNVLI-RPLAYCKESDIQTF 196 >gi|218548977|ref|YP_002382768.1| C32 tRNA thiolase [Escherichia fergusonii ATCC 35469] gi|254790129|sp|B7LRU9|TTCA_ESCF3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218356518|emb|CAQ89141.1| putative C32 tRNA thiolase [Escherichia fergusonii ATCC 35469] Length = 311 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|320653570|gb|EFX21675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 308 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 39 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 95 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 96 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 154 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 155 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 196 >gi|300822486|ref|ZP_07102625.1| PP-loop family protein [Escherichia coli MS 119-7] gi|331677133|ref|ZP_08377829.1| conserved hypothetical protein [Escherichia coli H591] gi|300524902|gb|EFK45971.1| PP-loop family protein [Escherichia coli MS 119-7] gi|331075822|gb|EGI47120.1| conserved hypothetical protein [Escherichia coli H591] Length = 311 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|332653827|ref|ZP_08419571.1| ExsB family protein [Ruminococcaceae bacterium D16] gi|332516913|gb|EGJ46518.1| ExsB family protein [Ruminococcaceae bacterium D16] Length = 256 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVD--HCLRETAKDEVRYVSDVC 77 + V VSGG DS+ LL AL + R F I F AI++D H D V+ C Sbjct: 24 VAVGVSGGKDSLMLLTALAKL---REFYPIPFEVEAITLDMGHADGRPGMD-FTPVARYC 79 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + ++++ + + + + + + R + K T I H +DD Sbjct: 80 EELGVPYTLIPSEIHHIIFDVRKEKNPCSMCAKMRRGALHNAMKERGITKIALGHHYDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET++M +G T L + + RP L C + +R + ++ E+ Sbjct: 140 VETLFM----SLIFEGRLSCFQPVTWLDRMGITQIRPMLYCGEQMVRHTAQRLDLPVVEN 195 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 P + +R ++ + +++ LK + F Sbjct: 196 PCPANGNTKRQEIKELIYELNGRYPGLKSRAF 227 >gi|218694920|ref|YP_002402587.1| C32 tRNA thiolase [Escherichia coli 55989] gi|254789877|sp|B7L5B2|TTCA_ECO55 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218351652|emb|CAU97367.1| putative C32 tRNA thiolase [Escherichia coli 55989] Length = 311 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|251789383|ref|YP_003004104.1| C32 tRNA thiolase [Dickeya zeae Ech1591] gi|247538004|gb|ACT06625.1| PP-loop domain protein [Dickeya zeae Ech1591] Length = 313 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232 >gi|293409739|ref|ZP_06653315.1| C32 tRNA thiolase [Escherichia coli B354] gi|291470207|gb|EFF12691.1| C32 tRNA thiolase [Escherichia coli B354] Length = 311 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|15801821|ref|NP_287839.1| C32 tRNA thiolase [Escherichia coli O157:H7 EDL933] gi|15831182|ref|NP_309955.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. Sakai] gi|74312284|ref|YP_310703.1| C32 tRNA thiolase [Shigella sonnei Ss046] gi|168762635|ref|ZP_02787642.1| protein YdaO [Escherichia coli O157:H7 str. EC4501] gi|194437000|ref|ZP_03069099.1| protein YdaO [Escherichia coli 101-1] gi|209918589|ref|YP_002292673.1| C32 tRNA thiolase [Escherichia coli SE11] gi|217329161|ref|ZP_03445241.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588] gi|253773654|ref|YP_003036485.1| C32 tRNA thiolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161423|ref|YP_003044531.1| C32 tRNA thiolase [Escherichia coli B str. REL606] gi|260855043|ref|YP_003228934.1| putative C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368] gi|260867792|ref|YP_003234194.1| putative C32 tRNA thiolase [Escherichia coli O111:H- str. 11128] gi|293414670|ref|ZP_06657319.1| C32 tRNA thiolase [Escherichia coli B185] gi|331662754|ref|ZP_08363677.1| conserved hypothetical protein [Escherichia coli TA143] gi|331672873|ref|ZP_08373659.1| conserved hypothetical protein [Escherichia coli TA280] gi|81765103|sp|Q8X8Q5|TTCA_ECO57 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123617055|sp|Q3Z194|TTCA_SHISS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790127|sp|B6IA61|TTCA_ECOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|12515408|gb|AAG56453.1|AE005371_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361393|dbj|BAB35351.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73855761|gb|AAZ88468.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|189367043|gb|EDU85459.1| protein YdaO [Escherichia coli O157:H7 str. EC4501] gi|194423983|gb|EDX39971.1| protein YdaO [Escherichia coli 101-1] gi|209911848|dbj|BAG76922.1| conserved hypothetical protein [Escherichia coli SE11] gi|217317600|gb|EEC26028.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588] gi|242377120|emb|CAQ31848.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)] gi|253324698|gb|ACT29300.1| PP-loop domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973324|gb|ACT38995.1| predicted C32 tRNA thiolase [Escherichia coli B str. REL606] gi|253977537|gb|ACT43207.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)] gi|257753692|dbj|BAI25194.1| predicted C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368] gi|257764148|dbj|BAI35643.1| predicted C32 tRNA thiolase [Escherichia coli O111:H- str. 11128] gi|291434728|gb|EFF07701.1| C32 tRNA thiolase [Escherichia coli B185] gi|320180213|gb|EFW55148.1| C32 tRNA thiolase [Shigella boydii ATCC 9905] gi|320642614|gb|EFX11862.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H- str. 493-89] gi|320647967|gb|EFX16675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H- str. H 2687] gi|323153564|gb|EFZ39815.1| PP-loop family protein [Escherichia coli EPECa14] gi|323168226|gb|EFZ53912.1| PP-loop family protein [Shigella sonnei 53G] gi|323179692|gb|EFZ65253.1| PP-loop family protein [Escherichia coli 1180] gi|323962411|gb|EGB57994.1| ydaO protein [Escherichia coli H489] gi|323973546|gb|EGB68731.1| ydaO protein [Escherichia coli TA007] gi|326343225|gb|EGD66992.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1044] gi|331061176|gb|EGI33140.1| conserved hypothetical protein [Escherichia coli TA143] gi|331070094|gb|EGI41463.1| conserved hypothetical protein [Escherichia coli TA280] gi|332091755|gb|EGI96835.1| PP-loop family protein [Shigella boydii 5216-82] Length = 311 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|300926735|ref|ZP_07142510.1| PP-loop family protein [Escherichia coli MS 182-1] gi|300417311|gb|EFK00622.1| PP-loop family protein [Escherichia coli MS 182-1] Length = 311 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|291282439|ref|YP_003499257.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615] gi|290762312|gb|ADD56273.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615] Length = 311 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|324117461|gb|EGC11367.1| ydaO protein [Escherichia coli E1167] Length = 311 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|193062617|ref|ZP_03043711.1| protein YdaO [Escherichia coli E22] gi|293433707|ref|ZP_06662135.1| C32 tRNA thiolase [Escherichia coli B088] gi|192931739|gb|EDV84339.1| protein YdaO [Escherichia coli E22] gi|284921219|emb|CBG34285.1| conserved hypothetical protein [Escherichia coli 042] gi|291324526|gb|EFE63948.1| C32 tRNA thiolase [Escherichia coli B088] Length = 311 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|300904997|ref|ZP_07122815.1| PP-loop family protein [Escherichia coli MS 84-1] gi|301305839|ref|ZP_07211924.1| PP-loop family protein [Escherichia coli MS 124-1] gi|300403146|gb|EFJ86684.1| PP-loop family protein [Escherichia coli MS 84-1] gi|300838929|gb|EFK66689.1| PP-loop family protein [Escherichia coli MS 124-1] gi|315254387|gb|EFU34355.1| PP-loop family protein [Escherichia coli MS 85-1] Length = 311 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|325958250|ref|YP_004289716.1| hypothetical protein Metbo_0492 [Methanobacterium sp. AL-21] gi|325329682|gb|ADZ08744.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21] Length = 311 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 17/130 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+ +SGG DS+ +L+ + S L +R G I A+++D + ++ V + Sbjct: 52 VLLGLSGGKDSV-MLLDILSTLKNR--GIIDLVAVTIDEGIEGYREEGVELAIKNAEKYG 108 Query: 82 IAHSVVSWK-------NSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHT 127 + H VVS+K + Q + R A R + + +K + AT I T H Sbjct: 109 VEHRVVSFKQYFGTTLDKIIQNNSLDVRRNACTYCGVFRRWIFNRVSKEVGATKIATGHN 168 Query: 128 FDDQLETVYM 137 DD+ +++ M Sbjct: 169 LDDETQSIVM 178 >gi|212712036|ref|ZP_03320164.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM 30120] gi|212685558|gb|EEB45086.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM 30120] Length = 304 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L ++ + I FS ++V+ ++ E Y+ ++ Sbjct: 37 IMVCLSGGKDSYTLLSILQNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEELGV 93 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A I AT I H DD L+T Sbjct: 94 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATEIGATKIALGHHRDDILQT 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI + Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 194 >gi|37526466|ref|NP_929810.1| C32 tRNA thiolase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81419231|sp|Q7N3Y7|TTCA_PHOLL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|36785897|emb|CAE14949.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 306 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L ++ + + FS ++V+ ++ E Y+ ++ Sbjct: 39 IMVCLSGGKDSYTLLSILQNL---QKSAPVNFSLVAVNLDQKQPGFPEHILPAYLGELGV 95 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 96 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 154 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI + Sbjct: 155 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 196 >gi|16129305|ref|NP_415860.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|89108192|ref|AP_001972.1| predicted C32 tRNA thiolase [Escherichia coli str. K-12 substr. W3110] gi|170081023|ref|YP_001730343.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli str. K-12 substr. DH10B] gi|238900579|ref|YP_002926375.1| putative C32 tRNA thiolase [Escherichia coli BW2952] gi|301022681|ref|ZP_07186534.1| PP-loop family protein [Escherichia coli MS 196-1] gi|2495598|sp|P76055|TTCA_ECOLI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830582|sp|B1XCH3|TTCA_ECODH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|259550623|sp|C4ZV92|TTCA_ECOBW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|1787606|gb|AAC74426.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|85674916|dbj|BAE76407.1| predicted C32 tRNA thiolase [Escherichia coli str. K12 substr. W3110] gi|169888858|gb|ACB02565.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli str. K-12 substr. DH10B] gi|238862182|gb|ACR64180.1| predicted C32 tRNA thiolase [Escherichia coli BW2952] gi|260449521|gb|ACX39943.1| PP-loop domain protein [Escherichia coli DH1] gi|299881169|gb|EFI89380.1| PP-loop family protein [Escherichia coli MS 196-1] gi|315135985|dbj|BAJ43144.1| C32 tRNA thiolase [Escherichia coli DH1] gi|323937670|gb|EGB33938.1| ydaO protein [Escherichia coli E1520] gi|323942291|gb|EGB38462.1| ydaO protein [Escherichia coli E482] Length = 311 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|307137986|ref|ZP_07497342.1| C32 tRNA thiolase [Escherichia coli H736] gi|331641911|ref|ZP_08343046.1| conserved hypothetical protein [Escherichia coli H736] gi|331038709|gb|EGI10929.1| conserved hypothetical protein [Escherichia coli H736] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|170754445|ref|YP_001782920.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] gi|169119657|gb|ACA43493.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] Length = 249 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 13/192 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLNMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT I H DD +ET++ Sbjct: 91 IEKNNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + K S D D + I RP + R + I+ + + N+ + D Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCPED 203 Query: 197 DRFERVRVRRFV 208 + R ++ + Sbjct: 204 KKTTREEMKNLM 215 >gi|320189894|gb|EFW64546.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC1212] gi|320637248|gb|EFX07074.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H7 str. G5101] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|301326916|ref|ZP_07220210.1| PP-loop family protein [Escherichia coli MS 78-1] gi|300846468|gb|EFK74228.1| PP-loop family protein [Escherichia coli MS 78-1] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|218700064|ref|YP_002407693.1| C32 tRNA thiolase [Escherichia coli IAI39] gi|254790123|sp|B7NHP6|TTCA_ECO7I RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218370050|emb|CAR17826.1| putative C32 tRNA thiolase [Escherichia coli IAI39] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|157159153|ref|YP_001462653.1| C32 tRNA thiolase [Escherichia coli E24377A] gi|157160856|ref|YP_001458174.1| C32 tRNA thiolase [Escherichia coli HS] gi|168749012|ref|ZP_02774034.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113] gi|168756029|ref|ZP_02781036.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401] gi|168769430|ref|ZP_02794437.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486] gi|168775173|ref|ZP_02800180.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196] gi|168782878|ref|ZP_02807885.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076] gi|168788326|ref|ZP_02813333.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869] gi|168799658|ref|ZP_02824665.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508] gi|170020290|ref|YP_001725244.1| C32 tRNA thiolase [Escherichia coli ATCC 8739] gi|188491839|ref|ZP_02999109.1| PP-loop family protein [Escherichia coli 53638] gi|191165079|ref|ZP_03026923.1| PP-loop family protein [Escherichia coli B7A] gi|193066928|ref|ZP_03047897.1| PP-loop family protein [Escherichia coli E110019] gi|194426010|ref|ZP_03058566.1| PP-loop family protein [Escherichia coli B171] gi|195938013|ref|ZP_03083395.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024] gi|208810905|ref|ZP_03252738.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206] gi|208815195|ref|ZP_03256374.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045] gi|208820138|ref|ZP_03260458.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042] gi|209398638|ref|YP_002270404.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115] gi|218553904|ref|YP_002386817.1| C32 tRNA thiolase [Escherichia coli IAI1] gi|218704864|ref|YP_002412383.1| C32 tRNA thiolase [Escherichia coli UMN026] gi|254792939|ref|YP_003077776.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14359] gi|256018402|ref|ZP_05432267.1| C32 tRNA thiolase [Shigella sp. D9] gi|260843692|ref|YP_003221470.1| putative C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009] gi|261224338|ref|ZP_05938619.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli O157:H7 str. FRIK2000] gi|293404873|ref|ZP_06648865.1| C32 tRNA thiolase [Escherichia coli FVEC1412] gi|298380517|ref|ZP_06990116.1| C32 tRNA thiolase [Escherichia coli FVEC1302] gi|300900109|ref|ZP_07118303.1| PP-loop family protein [Escherichia coli MS 198-1] gi|300927859|ref|ZP_07143421.1| PP-loop family protein [Escherichia coli MS 187-1] gi|300937577|ref|ZP_07152391.1| PP-loop family protein [Escherichia coli MS 21-1] gi|309797092|ref|ZP_07691490.1| PP-loop family protein [Escherichia coli MS 145-7] gi|312971542|ref|ZP_07785717.1| PP-loop family protein [Escherichia coli 1827-70] gi|331667743|ref|ZP_08368607.1| conserved hypothetical protein [Escherichia coli TA271] gi|331682839|ref|ZP_08383458.1| conserved hypothetical protein [Escherichia coli H299] gi|332279456|ref|ZP_08391869.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9] gi|205830581|sp|A7ZLH4|TTCA_ECO24 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830583|sp|A7ZZT7|TTCA_ECOHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830585|sp|B1ISR7|TTCA_ECOLC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789878|sp|B5Z0R4|TTCA_ECO5E RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790125|sp|B7LYL5|TTCA_ECO8A RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790126|sp|B7N4F3|TTCA_ECOLU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|121486021|gb|ABM54890.1| ATPase [Escherichia coli] gi|157066536|gb|ABV05791.1| PP-loop family protein [Escherichia coli HS] gi|157081183|gb|ABV20891.1| PP-loop family protein [Escherichia coli E24377A] gi|169755218|gb|ACA77917.1| PP-loop domain protein [Escherichia coli ATCC 8739] gi|187769348|gb|EDU33192.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196] gi|188016561|gb|EDU54683.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113] gi|188487038|gb|EDU62141.1| PP-loop family protein [Escherichia coli 53638] gi|188999726|gb|EDU68712.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076] gi|189356826|gb|EDU75245.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401] gi|189361597|gb|EDU80016.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486] gi|189371828|gb|EDU90244.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869] gi|189377987|gb|EDU96403.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508] gi|190904851|gb|EDV64556.1| PP-loop family protein [Escherichia coli B7A] gi|192959518|gb|EDV89952.1| PP-loop family protein [Escherichia coli E110019] gi|194416065|gb|EDX32331.1| PP-loop family protein [Escherichia coli B171] gi|208724411|gb|EDZ74119.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206] gi|208731843|gb|EDZ80531.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045] gi|208740261|gb|EDZ87943.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042] gi|209160038|gb|ACI37471.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115] gi|218360672|emb|CAQ98233.1| putative C32 tRNA thiolase [Escherichia coli IAI1] gi|218431961|emb|CAR12846.1| putative C32 tRNA thiolase [Escherichia coli UMN026] gi|254592339|gb|ACT71700.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli O157:H7 str. TW14359] gi|257758839|dbj|BAI30336.1| predicted C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009] gi|291427081|gb|EFF00108.1| C32 tRNA thiolase [Escherichia coli FVEC1412] gi|298277959|gb|EFI19473.1| C32 tRNA thiolase [Escherichia coli FVEC1302] gi|300356388|gb|EFJ72258.1| PP-loop family protein [Escherichia coli MS 198-1] gi|300457385|gb|EFK20878.1| PP-loop family protein [Escherichia coli MS 21-1] gi|300464144|gb|EFK27637.1| PP-loop family protein [Escherichia coli MS 187-1] gi|308119262|gb|EFO56524.1| PP-loop family protein [Escherichia coli MS 145-7] gi|310336139|gb|EFQ01339.1| PP-loop family protein [Escherichia coli 1827-70] gi|315619432|gb|EFU99976.1| PP-loop family protein [Escherichia coli 3431] gi|320199385|gb|EFW73976.1| C32 tRNA thiolase [Escherichia coli EC4100B] gi|323162443|gb|EFZ48295.1| PP-loop family protein [Escherichia coli E128010] gi|323185488|gb|EFZ70849.1| PP-loop family protein [Escherichia coli 1357] gi|323947686|gb|EGB43689.1| PP-loop family protein [Escherichia coli H120] gi|324021226|gb|EGB90445.1| PP-loop family protein [Escherichia coli MS 117-3] gi|326340987|gb|EGD64780.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1125] gi|331065328|gb|EGI37223.1| conserved hypothetical protein [Escherichia coli TA271] gi|331080470|gb|EGI51649.1| conserved hypothetical protein [Escherichia coli H299] gi|332101808|gb|EGJ05154.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|256022942|ref|ZP_05436807.1| C32 tRNA thiolase [Escherichia sp. 4_1_40B] gi|300948430|ref|ZP_07162532.1| PP-loop family protein [Escherichia coli MS 116-1] gi|300954598|ref|ZP_07167043.1| PP-loop family protein [Escherichia coli MS 175-1] gi|301647155|ref|ZP_07246976.1| PP-loop family protein [Escherichia coli MS 146-1] gi|300318432|gb|EFJ68216.1| PP-loop family protein [Escherichia coli MS 175-1] gi|300452054|gb|EFK15674.1| PP-loop family protein [Escherichia coli MS 116-1] gi|301074641|gb|EFK89447.1| PP-loop family protein [Escherichia coli MS 146-1] gi|332343043|gb|AEE56377.1| C32 tRNA thiolase [Escherichia coli UMNK88] Length = 311 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|307309897|ref|ZP_07589547.1| PP-loop domain protein [Escherichia coli W] gi|306909615|gb|EFN40109.1| PP-loop domain protein [Escherichia coli W] gi|315060598|gb|ADT74925.1| predicted C32 tRNA thiolase [Escherichia coli W] gi|323378839|gb|ADX51107.1| PP-loop domain protein [Escherichia coli KO11] Length = 311 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|260768432|ref|ZP_05877366.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP 102972] gi|260616462|gb|EEX41647.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP 102972] gi|315180143|gb|ADT87057.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Vibrio furnissii NCTC 11218] Length = 310 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I FS I+V+ ++ E Y++ + Sbjct: 43 IMVCLSGGKDSFTMLEILMSL---QKSAPISFSLIAVNLDQKQPGFPEHILPEYLASLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD +ET Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHHRDDIIET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|57241883|ref|ZP_00369823.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57017075|gb|EAL53856.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 322 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 18/191 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSDVCSR 79 L+A S GSDS L L + F +++ R+ + ++E R ++ Sbjct: 16 LLAFSYGSDSTALFYLLER-------ENVIFDMALINYKTRQNSDLEEEEARLLAK---- 64 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + + + AR+ RYA + ++ AH +D E M Sbjct: 65 -RFHKQIFIQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDLFEWFLM-- 121 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 Q M L GM N + RP L +E I +FL + + + +D SN D +F Sbjct: 122 QLSKGAGAMELLGM-SAFEKRENYTLIRPLLNVTKEQILAFLRENKLKYFDDESNKDLKF 180 Query: 200 ERVRVRRFVRD 210 +R +R D Sbjct: 181 KRNFIREHFSD 191 >gi|329577263|gb|EGG58727.1| PP-loop family protein [Enterococcus faecalis TX1467] Length = 119 Score = 41.2 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ C + Sbjct: 56 IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112 Query: 82 IAH 84 + + Sbjct: 113 LTY 115 >gi|324113197|gb|EGC07172.1| C32 tRNA thiolase [Escherichia fergusonii B253] gi|325497404|gb|EGC95263.1| C32 tRNA thiolase [Escherichia fergusonii ECD227] Length = 311 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|324006197|gb|EGB75416.1| PP-loop family protein [Escherichia coli MS 57-2] Length = 311 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|261257408|ref|ZP_05949941.1| putative C32 tRNA thiolase [Escherichia coli O157:H7 str. FRIK966] Length = 295 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|70997431|ref|XP_753463.1| PP-loop family protein [Aspergillus fumigatus Af293] gi|66851099|gb|EAL91425.1| PP-loop family protein [Aspergillus fumigatus Af293] Length = 709 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 21/149 (14%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-RI 82 +AVSGG+DSM L + + +A VDH RE + E R V+ S + + Sbjct: 100 LAVSGGTDSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLSDMGKP 159 Query: 83 AHSVVSWKNSKPQTGLMAA------------------AREARYALISEHAKTINATLIMT 124 +V+ + TGL A AR R+ + + + ++ Sbjct: 160 DDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLM 219 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGM 153 H DD +ET R +G GL+G+ Sbjct: 220 GHHQDDNVETTLWR--LCTGARGAGLAGI 246 >gi|124485791|ref|YP_001030407.1| hypothetical protein Mlab_0970 [Methanocorpusculum labreanum Z] gi|124363332|gb|ABN07140.1| PP-loop domain protein [Methanocorpusculum labreanum Z] Length = 300 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS LL L + D + I+VD + D + + +C +L Sbjct: 52 IAVGLSGGKDSTVLLTVLAKLDLD-----AELIPITVDEGIGGYRDDTILAATRLCDKLG 106 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +A +VS+ + + P+ R AL ++ A+ + AT I T H DD Sbjct: 107 LADRLVSFTDICGKTLDELLSNDPRQACSVCGTLRRRAL-NQAAREVGATKIATGHCLDD 165 Query: 131 QLETVYM 137 + ++V M Sbjct: 166 EAQSVLM 172 >gi|91210638|ref|YP_540624.1| C32 tRNA thiolase [Escherichia coli UTI89] gi|218558331|ref|YP_002391244.1| C32 tRNA thiolase [Escherichia coli S88] gi|237705374|ref|ZP_04535855.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp. 3_2_53FAA] gi|122423840|sp|Q1RC21|TTCA_ECOUT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789876|sp|B7MM21|TTCA_ECO45 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91072212|gb|ABE07093.1| hypothetical protein YdaO [Escherichia coli UTI89] gi|218365100|emb|CAR02807.1| putative C32 tRNA thiolase [Escherichia coli S88] gi|226900131|gb|EEH86390.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp. 3_2_53FAA] gi|294492177|gb|ADE90933.1| PP-loop family protein [Escherichia coli IHE3034] gi|307627082|gb|ADN71386.1| C32 tRNA thiolase [Escherichia coli UM146] gi|315289077|gb|EFU48475.1| PP-loop family protein [Escherichia coli MS 110-3] gi|323949053|gb|EGB44945.1| ydaO protein [Escherichia coli H252] gi|323956905|gb|EGB52637.1| ydaO protein [Escherichia coli H263] Length = 311 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|26247680|ref|NP_753720.1| C32 tRNA thiolase [Escherichia coli CFT073] gi|110641578|ref|YP_669308.1| C32 tRNA thiolase [Escherichia coli 536] gi|191170922|ref|ZP_03032473.1| protein YdaO [Escherichia coli F11] gi|218689334|ref|YP_002397546.1| C32 tRNA thiolase [Escherichia coli ED1a] gi|227886219|ref|ZP_04004024.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972] gi|300971603|ref|ZP_07171514.1| PP-loop family protein [Escherichia coli MS 45-1] gi|300972036|ref|ZP_07171796.1| PP-loop family protein [Escherichia coli MS 200-1] gi|301046193|ref|ZP_07193366.1| PP-loop family protein [Escherichia coli MS 185-1] gi|331646675|ref|ZP_08347778.1| conserved hypothetical protein [Escherichia coli M605] gi|331657398|ref|ZP_08358360.1| conserved hypothetical protein [Escherichia coli TA206] gi|81476555|sp|Q8FHP6|TTCA_ECOL6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123344045|sp|Q0TI22|TTCA_ECOL5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790124|sp|B7MUI7|TTCA_ECO81 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|26108082|gb|AAN80282.1|AE016760_141 Hypothetical protein ydaO [Escherichia coli CFT073] gi|27526304|emb|CAD42727.1| YdaO protein [Escherichia coli] gi|110343170|gb|ABG69407.1| hypothetical protein YdaO [Escherichia coli 536] gi|190908654|gb|EDV68242.1| protein YdaO [Escherichia coli F11] gi|218426898|emb|CAR07753.2| putative C32 tRNA thiolase [Escherichia coli ED1a] gi|222033148|emb|CAP75888.1| UPF0021 protein ydaO [Escherichia coli LF82] gi|227836423|gb|EEJ46889.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972] gi|281178535|dbj|BAI54865.1| conserved hypothetical protein [Escherichia coli SE15] gi|300301802|gb|EFJ58187.1| PP-loop family protein [Escherichia coli MS 185-1] gi|300309258|gb|EFJ63778.1| PP-loop family protein [Escherichia coli MS 200-1] gi|300411217|gb|EFJ94755.1| PP-loop family protein [Escherichia coli MS 45-1] gi|307553406|gb|ADN46181.1| PP-loop family protein [Escherichia coli ABU 83972] gi|312945980|gb|ADR26807.1| C32 tRNA thiolase [Escherichia coli O83:H1 str. NRG 857C] gi|315295394|gb|EFU54724.1| PP-loop family protein [Escherichia coli MS 153-1] gi|315297175|gb|EFU56455.1| PP-loop family protein [Escherichia coli MS 16-3] gi|320195642|gb|EFW70267.1| C32 tRNA thiolase [Escherichia coli WV_060327] gi|323187578|gb|EFZ72887.1| PP-loop family protein [Escherichia coli RN587/1] gi|324011375|gb|EGB80594.1| PP-loop family protein [Escherichia coli MS 60-1] gi|331045427|gb|EGI17554.1| conserved hypothetical protein [Escherichia coli M605] gi|331055646|gb|EGI27655.1| conserved hypothetical protein [Escherichia coli TA206] Length = 311 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|330911208|gb|EGH39718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Escherichia coli AA86] Length = 311 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|323977023|gb|EGB72110.1| ydaO protein [Escherichia coli TW10509] Length = 311 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|117623596|ref|YP_852509.1| C32 tRNA thiolase [Escherichia coli APEC O1] gi|205830584|sp|A1AAV5|TTCA_ECOK1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|115512720|gb|ABJ00795.1| hypothetical protein YdaO [Escherichia coli APEC O1] Length = 311 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|13541276|ref|NP_110964.1| ATPase [Thermoplasma volcanium GSS1] Length = 309 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L LH +L +R KIK A +VD + + +C+ L Sbjct: 51 ISVALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLG 108 Query: 82 IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H +S+ +S P A R LI+E A +A + DD Sbjct: 109 IDHETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDD 168 Query: 131 QLETVYM 137 +++ M Sbjct: 169 YSQSILM 175 >gi|14324659|dbj|BAB59586.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 312 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L LH +L +R KIK A +VD + + +C+ L Sbjct: 54 ISVALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLG 111 Query: 82 IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H +S+ +S P A R LI+E A +A + DD Sbjct: 112 IDHETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDD 171 Query: 131 QLETVYM 137 +++ M Sbjct: 172 YSQSILM 178 >gi|157145670|ref|YP_001452989.1| C32 tRNA thiolase [Citrobacter koseri ATCC BAA-895] gi|205830573|sp|A8AGE0|TTCA_CITK8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157082875|gb|ABV12553.1| hypothetical protein CKO_01418 [Citrobacter koseri ATCC BAA-895] Length = 311 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ ++ Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLENLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|326389916|ref|ZP_08211479.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993976|gb|EGD52405.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 235 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 I V VSGG DS+ LL LH + ++F +KF + + L D V + C Sbjct: 24 IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTLGYDNFDPTP-VENFCREKG 79 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R ++ AK + AH +DD + Sbjct: 80 IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + +R +R + D+ Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211 >gi|170759818|ref|YP_001788613.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406807|gb|ACA55218.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] Length = 249 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 11/123 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSD 75 I VAVSGG DS+ LL L + L+D I+ AI VD L + + V Sbjct: 32 IAVAVSGGKDSIFLLFCLKLIQLTD--IKDIEIVAIHVDLGLDMDLEPLKIFCKKNSVDL 89 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 V + IA+ V + + K L + ++ IS K+I AT I H DD +ET+ Sbjct: 90 VIEKTNIANVVFNERKEKNPCSLCSKLKKGCLVRIS---KSIGATKIALGHNCDDVIETL 146 Query: 136 YMR 138 +M Sbjct: 147 FMN 149 >gi|323964520|gb|EGB59995.1| ydaO protein [Escherichia coli M863] Length = 311 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|293396003|ref|ZP_06640284.1| PP-loop family protein [Serratia odorifera DSM 4582] gi|291421501|gb|EFE94749.1| PP-loop family protein [Serratia odorifera DSM 4582] Length = 312 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 15/170 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS I+V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLIAVNLDQKQPGFPEHILPAYLDGLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +++ KGM M D D + RP CR +DI F + + Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAK 203 >gi|260778673|ref|ZP_05887565.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260604837|gb|EEX31132.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 310 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 46/243 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I FS I+V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPINFSLIAVNLDQKQPGFPGHILPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ A + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTANELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-- 185 DD LET+++ KGM + D + + RP CR +DI F R Sbjct: 152 RDDILETLFLNMFHGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIIKFSDMRGYP 207 Query: 186 ---ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + C N +R +++ + D D K+F + A+ ++P +L Sbjct: 208 IIPCNLCGSQPN----LQRQNIKQMLNDWD--------KRFPGRIESMFRAMQNVVPSHL 255 Query: 243 TVH 245 H Sbjct: 256 ADH 258 >gi|170683989|ref|YP_001743832.1| C32 tRNA thiolase [Escherichia coli SMS-3-5] gi|205830586|sp|B1LG84|TTCA_ECOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|170521707|gb|ACB19885.1| PP-loop family protein [Escherichia coli SMS-3-5] Length = 311 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|215486638|ref|YP_002329069.1| C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69] gi|312966725|ref|ZP_07780943.1| PP-loop family protein [Escherichia coli 2362-75] gi|254789875|sp|B7URE9|TTCA_ECO27 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|215264710|emb|CAS09084.1| predicted C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69] gi|312288189|gb|EFR16091.1| PP-loop family protein [Escherichia coli 2362-75] Length = 311 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|307267037|ref|ZP_07548552.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917962|gb|EFN48221.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 235 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 I V VSGG DS+ LL LH + ++F +KF + + L D V + C Sbjct: 24 IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTLGYDNFDPTP-VENFCREKG 79 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R ++ AK + AH +DD + Sbjct: 80 IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + +R +R + D+ Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211 >gi|292669438|ref|ZP_06602864.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648891|gb|EFF66863.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 465 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 42/279 (15%) Query: 16 LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYV 73 L YP +LVA SGG+DS+ L ++ + G + +H +R + + R+V Sbjct: 18 LFYPVRKLLVACSGGTDSL---ALLDALDILHTAGGAQLICAHYEHGIRGADSLADARFV 74 Query: 74 SDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C+ I A V ++ + L AAR RY + I+ AH Sbjct: 75 EAFCAMRGIPFVLEAGDVPAYARMH-KCSLETAARICRYDFLYRVCDERKCDAIVLAHHA 133 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ETV MR R G G +G+ D L++ RP L R ++ ++ ++R + Sbjct: 134 DDLAETVLMRILR-----GTGPAGLAAMRERD-GLYL-RPLLTVMRAEVEAYAVKRGLMP 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D +N R R+R H L ++ + + V +A+ L S Sbjct: 187 RHDATNDAMDARRNRIR--------HELLPELARTYN--PAVRDALTRL----------S 226 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 +A +D L + Y + A+C G +S+P R++ Sbjct: 227 ALAAEEDDLLAELAEDAY----THALCVGGLSIPALRAL 261 >gi|261821855|ref|YP_003259961.1| C32 tRNA thiolase [Pectobacterium wasabiae WPP163] gi|261605868|gb|ACX88354.1| PP-loop domain protein [Pectobacterium wasabiae WPP163] Length = 311 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSFTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-----ISWC 189 +++ KGM M D D + RP CR +DI F R + C Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPIIPCNLC 213 Query: 190 EDPSNTDDRFERVRVRRFVRDID 212 N +R ++ +RD D Sbjct: 214 GSQPN----LQRQVIKDMLRDWD 232 >gi|197285222|ref|YP_002151094.1| C32 tRNA thiolase [Proteus mirabilis HI4320] gi|227355648|ref|ZP_03840042.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906] gi|194682709|emb|CAR42884.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227164255|gb|EEI49148.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906] Length = 306 Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V +SGG DS LL L ++ + I+FS I+V+ ++ E + + +L Sbjct: 37 IMVCLSGGKDSYTLLSILMNL---QKSAPIQFSLIAVNLDQKQPGFPE-HILPEYLEQLG 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V ++ + R ++ A + AT I H DD LET Sbjct: 93 VEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATEVGATKIALGHHRDDILET 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP R +DI F +N P N Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYAREKDIERFAQAKNFPII--PCN 206 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227 >gi|167770401|ref|ZP_02442454.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM 17241] gi|167667408|gb|EDS11538.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM 17241] Length = 236 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 26/219 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY--VSDVC 77 + V VSGG DS+ LL L V R F I F+ AI++D+ + E Y ++ +C Sbjct: 24 VAVGVSGGKDSVALLAGLAGV---RRFIGISFTLKAITLDN---QFGGIETDYGPIAALC 77 Query: 78 SRLR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 RL I + +N L A R L+ + AKT I H + Sbjct: 78 ERLGVEYILKRTDIGRIIFDERNESNPCSLCA---RMRRGLLHDTAKTNGCNKIALGHHY 134 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET M + E +G T L +L + RP + +IR+ + + + Sbjct: 135 NDAVETFLMNL---FNEGRIGCFSPV-TYLSRKDLTMVRPLVFATEREIRNAVNRAGLPV 190 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + D ER + F+ D++ + + + F +R Sbjct: 191 VKSACPVDGCTERQWTKEFLYDMEKNHPGITKRIFGAMR 229 >gi|119477118|ref|ZP_01617354.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143] gi|119449481|gb|EAW30719.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143] Length = 446 Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 11/180 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL L V A+ ++H L+ ++ ++ + L I Sbjct: 28 LVAYSGGVDSCVLLDCLIGVAD-----HPPIVAVHINHQLQAASEQWRKHCEKRAAALNI 82 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A + + L AAR ARY + + ++ H DDQ+ET+ +R R Sbjct: 83 AIICIDVDVDLHSGRSLEDAARVARYDAFETIVR--HDDVLFFGHHLDDQVETMLLRLLR 140 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G + ++RP L R I ++ + W +D SN F+R Sbjct: 141 GSGSRGAAAMPSSRALGSGQ---LARPLLDIPRSAIETYATINQLEWIDDSSNQSLDFDR 197 >gi|332977368|gb|EGK14150.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Psychrobacter sp. 1501(2011)] Length = 523 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 27/187 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I +A SGG DS+ L + GK+ F + V+H +++ VS+ + Sbjct: 27 IWLACSGGRDSLSLAHLCQQLFE---AGKLPFLPQLLHVNHGMQQANDIWAEQVSNWAKQ 83 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V+ K AR+ARY + N LI+ H DDQ+ET+ MR Sbjct: 84 NQMPCRVLEIDLVKKTE---QEARQARYEAMM-GVMNHNDVLIL-GHHQDDQVETLLMRL 138 Query: 140 QRDYAEKGM-GLSGMCD-----TILYD------LNLWISRPFLRCRREDIRSFLLQRNIS 187 + G GLSGM + ++ D + LW RP L RE I + ++ Sbjct: 139 ---FNGAGANGLSGMKEWSTKQSMANDYRCQKSIVLW--RPLLSVSREQITEYANHNQLA 193 Query: 188 WCEDPSN 194 + +DP+N Sbjct: 194 YIDDPTN 200 >gi|327254039|gb|EGE65668.1| PP-loop family protein [Escherichia coli STEC_7v] Length = 311 Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|11465849|ref|NP_053993.1| hypothetical protein PopuCp198 [Porphyra purpurea] gi|1723412|sp|P51383|TILS_PORPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1276849|gb|AAC08269.1| ORF327 [Porphyra purpurea] Length = 327 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 8/183 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS+ L+ L+ + F + + + I DH R D + V S R Sbjct: 29 VAFSGGQDSLTLVKLLYDL---NPFYRWRITLIHFDHRWRW---DSMLASKQVFSFARYY 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + + A+R+ RY + + A N T I+ AHT D ET+ R Sbjct: 83 NFPLYYFECPDYLNTEEASRKWRYTTLIDLAVKNNFTKILLAHTATDSSETLLSNLFRGT 142 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + G+ G + +++I RP L R + F + + D SN D R R Sbjct: 143 SLDGLASIGWSCQL--AQSVYIVRPLLNFYRFETSWFCRKYYLPIWVDRSNYDYIMFRNR 200 Query: 204 VRR 206 +R+ Sbjct: 201 LRQ 203 >gi|326795425|ref|YP_004313245.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas mediterranea MMB-1] gi|326546189|gb|ADZ91409.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas mediterranea MMB-1] Length = 278 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L L+ ++ I+F ++V+ ++ E +Y+ D+ Sbjct: 40 VMVCLSGGKDSYTMLEIL---LNLQASAPIEFEIVAVNLDQKQPGFPEHILPKYLEDIGV 96 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +S+V + +T +R R +L A+ I AT I H DD LET Sbjct: 97 NFHILERDTYSIVKEVVPEGKTTCGLCSRLRRGSLYG-FAEEIGATKIALGHHRDDILET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180 +++ G L M +L D + RP C+ EDI F Sbjct: 156 LFLNMFF-----GGKLKSMPPKLLSDDGKHVVIRPLAYCKEEDIEKF 197 >gi|331652394|ref|ZP_08353413.1| conserved hypothetical protein [Escherichia coli M718] gi|331050672|gb|EGI22730.1| conserved hypothetical protein [Escherichia coli M718] Length = 311 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKIKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|332706450|ref|ZP_08426511.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L] gi|332354334|gb|EGJ33813.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L] Length = 337 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 33/198 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-----VRYVSD 75 +LVAVSGG DS+ L L + K K+ + + HC DE V+ ++ Sbjct: 29 QVLVAVSGGQDSLCLSKLLLDLQP-----KWKWQ-LGIAHCDHRWTYDEGISLHVQQIAQ 82 Query: 76 VCS---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 LRIA V K S+ +AAR+ RY + + A+T ++T HT D+ Sbjct: 83 SWGLPFHLRIAPEV---KKSE------SAARQWRYQALIDIAQTQGYATVVTGHTKSDRA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISW 188 ETV R G G G+ + ++ L + RP L R + F Q+ +S Sbjct: 134 ETVLYNLIR-----GSGTDGL-QALTWERPLAPGVRLVRPLLDTSRSETLQFCEQQQLSI 187 Query: 189 CEDPSNTDDRFERVRVRR 206 D N D + R R+R+ Sbjct: 188 WVDAYNQDLNYARNRIRQ 205 >gi|254168818|ref|ZP_04875659.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|197622255|gb|EDY34829.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] Length = 308 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 27/138 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+AVSGG DSM L +H + FGK ++ A++VD + + K + + Sbjct: 50 ILIAVSGGKDSMLTLYQMHKI-----FGKWRDLELVAVTVDEGIGDFRKSCAKVANTYAK 104 Query: 79 RLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTINATLIM 123 +L I H V+++K KP T R+ +++ ++K I A ++ Sbjct: 105 KLGIKHEVITFKEYLGITTDDVARVDKELKPCTYCGVFRRK----VLNMYSKEIGANYLI 160 Query: 124 TAHTFDDQLETVYMRSQR 141 DD +++ M R Sbjct: 161 LGLNLDDIAQSIIMNITR 178 >gi|167385245|ref|XP_001737264.1| ATP-binding domain-containing protein [Entamoeba dispar SAW760] gi|165899992|gb|EDR26462.1| ATP-binding domain-containing protein, putative [Entamoeba dispar SAW760] Length = 313 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70 L+YP HI++ VSGG DS L L + + R K++ ++VD + R+ + + V Sbjct: 43 QLIYPTDHIVIGVSGGKDSTALATML-TRIEKRWPSGAKYTLVAVDEGIVGYRDKSLECV 101 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------ISEHAKTINAT 120 R++ + L++ ++S+ + T R + A + + A + A Sbjct: 102 RWLQEY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGVLRRQCLEKAAIKVGAN 158 Query: 121 LIMTAHTFDDQLETVYM 137 +I T H DD ETV M Sbjct: 159 VIATGHNGDDVAETVLM 175 >gi|153939398|ref|YP_001392642.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|152935294|gb|ABS40792.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|295320627|gb|ADG01005.1| PP-loop family protein [Clostridium botulinum F str. 230613] Length = 249 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 17/194 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L + + + V Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIIAIHVDLGLDMDLEPLKIFCKKNSIDLV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT I H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147 Query: 137 MRSQRDYAEKGMGLSGMCD-TILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M + +G G + I Y D + I RP + R + I+ + + N+ + Sbjct: 148 MNVLK------IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCP 201 Query: 195 TDDRFERVRVRRFV 208 D + R ++ + Sbjct: 202 EDKKTTREEMKNLM 215 >gi|94985996|ref|YP_605360.1| PP-loop domain-containing protein [Deinococcus geothermalis DSM 11300] gi|205830577|sp|Q1IX43|TTCA_DEIGD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|94556277|gb|ABF46191.1| tRNA s(2)C-32 sulfurtransferase [Deinococcus geothermalis DSM 11300] Length = 289 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++V +SGG DS LL I LH L R+ + A+++D K + + +RL Sbjct: 34 VMVCLSGGKDSYTLLDILLH--LQKRAPIHFEVVAVNLDQGQPGFPK---HVLPEYLTRL 88 Query: 81 RI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + +S+V K + +T +R R ++ HA+ I AT I H DD L Sbjct: 89 GVPFDILTEDTYSIVKEKTPEGKTTCALCSR-LRRGILYRHAREIGATKIALGHHRDDIL 147 Query: 133 ETVYM 137 ET++M Sbjct: 148 ETLFM 152 >gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88] gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger] Length = 645 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%) Query: 19 PAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 P + +A+SGG+DSM L + S K +A VDH RE + E V+ Sbjct: 45 PRRLGLAISGGADSMALAYLCKQWERTQTQTSDEKTSVTAFVVDHKAREESTREANMVAG 104 Query: 76 VCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + ++W S + AR R+ + + + + ++ H DD +E Sbjct: 105 WLDDMGLQTQILPLTWP-SHHISAFETHARRLRFQALGQACRAHSIETLLMGHHQDDNVE 163 Query: 134 TVYMRSQRDYAEKGMGLSGM 153 T R +G GL+G+ Sbjct: 164 TTLWR--LCTGARGAGLAGI 181 >gi|145591717|ref|YP_001153719.1| PP-loop domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283485|gb|ABP51067.1| PP-loop domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 332 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 25/144 (17%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69 L+ P ++ VAVSGG DS+ LL L S +K A +V+ C ++ + Sbjct: 49 LIVPGDYVAVAVSGGKDSLVLLHILGSFKERGLLRDVKMEAFTVNEGHPYSCFYRMSRRD 108 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121 YV ++ +R I ++V +K+ T + R A+ A H TI+ L Sbjct: 109 --YVRELAARFGIEYNVYHFKDFFGVTAQELSERLAK-AGHEVHMCTIDGVLRRRLMNVV 165 Query: 122 --------IMTAHTFDDQLETVYM 137 I TAH DD+ +TV M Sbjct: 166 GRRRGWTKIATAHNLDDEAQTVLM 189 >gi|146311794|ref|YP_001176868.1| C32 tRNA thiolase [Enterobacter sp. 638] gi|205830587|sp|A4WAT7|TTCA_ENT38 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145318670|gb|ABP60817.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter sp. 638] Length = 311 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 15/170 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + +KFS ++V+ ++ E Y+ Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVKFSLVAVNLDQKQPGFPEHILPEYLEQQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +++ KGM M D D + RP CR +DI F R Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAR 203 >gi|110597047|ref|ZP_01385336.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM 13031] gi|110341238|gb|EAT59703.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM 13031] Length = 337 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISV 58 FLS I++ R + ILVA+SGG DSM +L AL VL + ++V Sbjct: 8 FLSQIKARRLVEQG----DRILVALSGGPDSMAMLSLFTALRPVLHLQ---------LAV 54 Query: 59 DHCL-----RETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYAL 109 HC RE+ DE +V + RL + V + S+ + L AR RY Sbjct: 55 AHCNFLLRGRESDGDE-DFVREAALRLGMECFVERFDTRHHASQLKKSLEETARILRYGF 113 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRP 168 + + + + TAH D ET+ R + + G+ D I+ RP Sbjct: 114 FDKVLEEQGFSKVATAHHVSDNAETILFNLFRGASLPALKGIRARNDRII--------RP 165 Query: 169 FLRCRREDIRSFLLQRNIS 187 L + +I+ +L ++ I+ Sbjct: 166 MLLLHKAEIKGYLKEKGIA 184 >gi|311279743|ref|YP_003941974.1| PP-loop domain-containing protein [Enterobacter cloacae SCF1] gi|308748938|gb|ADO48690.1| PP-loop domain protein [Enterobacter cloacae SCF1] Length = 311 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPEYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|289578527|ref|YP_003477154.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] gi|289528240|gb|ADD02592.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] Length = 235 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 I V VSGG DS+ LL LH + ++F KF + + L D + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTLGYDNFDP-KPVENFCREKE 79 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R R AL + AK + AH +DD + Sbjct: 80 IPFFIKETEIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFVM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + +R +R + D+ Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211 >gi|281418862|ref|ZP_06249881.1| PP-loop domain protein [Clostridium thermocellum JW20] gi|281407946|gb|EFB38205.1| PP-loop domain protein [Clostridium thermocellum JW20] Length = 237 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 24/199 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL+AL + ++F +KF AI++ + E VR ++C R Sbjct: 27 IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 80 Query: 80 LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + ++++V + ++ K + A R AL AK + + AH D + Sbjct: 81 IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMHDVI 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + Y + S + T L L++ RP + + ++ F+ NI +P Sbjct: 140 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 195 Query: 193 SNTDDRFERVRVRRFVRDI 211 + + R++++D+ Sbjct: 196 CPANGYTK----RQYIKDL 210 >gi|118575266|ref|YP_875009.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A] gi|118193787|gb|ABK76705.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A] Length = 269 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 20/128 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG DS+ LL L + F + A+++D + + + V + C L Sbjct: 8 VAVGVSGGKDSLVLLHILEQMSQKWGF---ELEAVTIDEGIPGYRDEALSIVEEYCGSLG 64 Query: 82 IAHSVVSWKN--------------SKPQTGLMAAAREARYALISEHA-KTINATLIMTAH 126 +AH V ++K+ QT R A+ +HA A ++ TAH Sbjct: 65 VAHRVYAYKDLFDMTLDEALNMRGENSQTSCSICGTLRRRAM--DHAIHDTGADVLATAH 122 Query: 127 TFDDQLET 134 DD L+T Sbjct: 123 NLDDTLQT 130 >gi|323702949|ref|ZP_08114606.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532080|gb|EGB21962.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 ++V VSGG DS LL L ++ R KI F A+ +D L ++ + + C R Sbjct: 29 VVVGVSGGKDSSTLLFFL-NMYRHRYLKKIPFELHAVHLDMGLGA----DLAPLKEFCHR 83 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I ++ + + +T A R + + + AH DD +E Sbjct: 84 LNIPLTIKKTDIGTILFDIRKETNPCALCANLRRGALHNTTLELGFNKVALAHHLDDVME 143 Query: 134 TVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 T +M + + +A K T L +L + RPF+ + + + NI Sbjct: 144 TFFMSLIFNGNMKTFAPK---------TYLDRTDLTVIRPFIYVTEDQVLELVDLENIPV 194 Query: 189 CEDPSNTDDRFERVRVRRFVRDI 211 +P + + +R ++ V ++ Sbjct: 195 VHNPCPANKKTKREEIKHLVDNL 217 >gi|307354722|ref|YP_003895773.1| phosphoadenosine phosphosulfate reductase [Methanoplanus petrolearius DSM 11571] gi|307157955|gb|ADN37335.1| phosphoadenosine phosphosulfate reductase [Methanoplanus petrolearius DSM 11571] Length = 295 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS LL L +R I AIS+D + +++ V + R Sbjct: 50 IAVAMSGGKDSSALLHFLAKTFGERR--DITIFAISIDEGI--CGYRDMKPVEKIAERYG 105 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130 ++ VS+K++ T A++ R L+++ A+ + AT I DD Sbjct: 106 VSFHSVSFKDAYGFTLDEIVAKQGDRISCSRCGVLRRHLLNKTARELGATKIALGFNLDD 165 Query: 131 QLETVYMRSQRDYAE 145 + ++V M + R AE Sbjct: 166 EAQSVLMNALRGDAE 180 >gi|55378723|ref|YP_136573.1| hypothetical protein rrnAC2005 [Haloarcula marismortui ATCC 43049] gi|55231448|gb|AAV46867.1| unknown [Haloarcula marismortui ATCC 43049] Length = 331 Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L LH ++ +I+ A+S+ + + ++ Sbjct: 53 PETWVIGLSGGKDSVVLTQILHDTFAEDP--RIELVALSIHEGIEGYRDASLEACEELTD 110 Query: 79 RLRIAHSVVSWKNS-----------KPQTGLMAAAREA--RYALISEHAKTINATLIMTA 125 L I H VS+ P+ G+ A A R L+S++A+ ++A ++T Sbjct: 111 DLGIEHVTVSYAEEFGVQMDDVVEDDPE-GMAACAYCGVFRRDLLSKYAEELDADKLLTG 169 Query: 126 HTFDDQLETVYMR 138 H DD+ ET M Sbjct: 170 HNLDDEAETALMN 182 >gi|330014984|ref|ZP_08308019.1| PP-loop family protein [Klebsiella sp. MS 92-3] gi|328532464|gb|EGF59261.1| PP-loop family protein [Klebsiella sp. MS 92-3] Length = 310 Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 57 IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 113 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 114 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 172 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 173 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 214 >gi|260598076|ref|YP_003210647.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Cronobacter turicensis z3032] gi|260217253|emb|CBA31174.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Cronobacter turicensis z3032] Length = 310 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y++ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLAALGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|327484092|gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae LMA3894-4] Length = 365 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|315638363|ref|ZP_07893542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter upsaliensis JV21] gi|315481574|gb|EFU72199.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter upsaliensis JV21] Length = 322 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 18/191 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSDVCSR 79 L+A S GSDS L L I F +++ R+ + ++E R ++ Sbjct: 16 LLAFSYGSDSTALFYLLERE-------NIIFDMALINYKTRQNSDLEEEEARLLAK---- 64 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 R + + + + AR+ RYA + ++ AH +D E M Sbjct: 65 -RFHKQIFTQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDLFEWFLM-- 121 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 Q M L GM N + RP L + I +FL + + + D SN D +F Sbjct: 122 QLSKGAGAMELLGM-SAFEKRENYTLIRPLLNVTKGQILAFLRENKLKYFNDESNKDLKF 180 Query: 200 ERVRVRRFVRD 210 +R +R D Sbjct: 181 KRNFIREHFSD 191 >gi|320333598|ref|YP_004170309.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus maricopensis DSM 21211] gi|319754887|gb|ADV66644.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus maricopensis DSM 21211] Length = 287 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%) Query: 22 ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79 ++V +SGG DS LL I LH L R+ + A+++D K + +Y++ + Sbjct: 32 VMVCLSGGKDSYTLLDILLH--LQKRAPIDFRLIAVNLDQGQPGFPKHVLPQYLTALGVE 89 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +I +SVV K + +T +R R ++ HAK I AT I H DD LET+ Sbjct: 90 HQILEQDTYSVVKDKTPEGKTTCSLCSR-LRRGILYTHAKRIGATKIALGHHRDDILETL 148 Query: 136 YM 137 +M Sbjct: 149 FM 150 >gi|217033783|ref|ZP_03439209.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10] gi|216943832|gb|EEC23272.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10] Length = 343 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 22/188 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DS L H ++ + I F VD+ T K + + +L Sbjct: 24 LLGFSGGLDSTCLF---HLLVGEN----ITFDTALVDY---NTQKRRLEIIQH-AQKLAQ 72 Query: 83 AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 AH + + P + AR+ RYA K + ++ AH +D+LE M+ Sbjct: 73 AHHKKCYIHYAPKIERNFEMRARKIRYAFFETLIKEHSYKHLILAHHLNDRLEWFLMQ-- 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 KG GL+ + Y+ + I RP L ++ +++ L ++ + ED SN+ + Sbjct: 131 ---LSKGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKA--LAKDWEFFEDDSNSSLK 185 Query: 199 FERVRVRR 206 F+R R+ Sbjct: 186 FKRNFFRK 193 >gi|257386246|ref|YP_003176019.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286] gi|257168553|gb|ACV46312.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286] Length = 332 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 P ++ +SGG DS+ L L V ++ +I+ A+S+ H E +DE S + Sbjct: 53 PETWVIGLSGGKDSVVLTQILQDVFAEDP--RIELVALSI-HEGIEGYRDESLDASVTLT 109 Query: 78 SRLRIAHSVVSWKNS-----------KPQTGLMAAAREA--RYALISEHAKTINATLIMT 124 L I H VVS+ P+ G+ A A R L+S++A ++A ++T Sbjct: 110 DDLGIRHEVVSYDEEFDVRMDEVVEDDPE-GMAACAYCGVFRRDLLSKYADELDADKLLT 168 Query: 125 AHTFDDQLETVYM 137 H DD+ ET M Sbjct: 169 GHNLDDEAETALM 181 >gi|148272021|ref|YP_001221582.1| putative cell cycle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829951|emb|CAN00876.1| putative cell cycle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 341 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AHT DDQ ETV + R L GM T + RP L R R+ Sbjct: 132 LLLAHTLDDQAETVLLGLAR--GSGATSLHGMAASTPARAADAVYLRPLLGIRAAVTRAA 189 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + + DP N D + RVRVR Sbjct: 190 CADQGLDPWRDPHNADPAYARVRVR 214 >gi|15217127|gb|AAK92521.1|AF401042_1 LaaH [Lactobacillus sakei] Length = 348 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%) Query: 119 ATLIMTAHTFDDQLETVYM---RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRR 174 A ++TAH DDQLET+ M RS + +G+ D L RP L + Sbjct: 6 ADYLVTAHHGDDQLETLMMKFIRSGELHEMRGIQSQRPFADGTLI-------RPLLPFAK 58 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 +D+R + L NI+ ED +N + R RVR Sbjct: 59 QDLRDYALANNITSFEDQTNYETTVLRNRVRH 90 >gi|67470756|ref|XP_651341.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56468066|gb|EAL45955.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 313 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 18/137 (13%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70 L+YP HI++ VSGG DS L L + R K++ ++VD + R+ + + V Sbjct: 43 QLIYPTDHIVIGVSGGKDSTALATMLARI-EKRWPSGAKYTLVAVDEGIVGYRDKSLECV 101 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------ISEHAKTINAT 120 R++ + L++ ++S+ + T R + A + + A + A Sbjct: 102 RWLQNY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGVLRRQCLEKAAIKVGAN 158 Query: 121 LIMTAHTFDDQLETVYM 137 +I T H DD ETV M Sbjct: 159 VIATGHNGDDVAETVLM 175 >gi|262402130|ref|ZP_06078691.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586] gi|262350912|gb|EEZ00045.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586] Length = 310 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLEILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|261339969|ref|ZP_05967827.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316] gi|288317886|gb|EFC56824.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316] Length = 311 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ ++ Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLENLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|283832996|ref|ZP_06352737.1| PP-loop family protein [Citrobacter youngae ATCC 29220] gi|291071608|gb|EFE09717.1| PP-loop family protein [Citrobacter youngae ATCC 29220] Length = 311 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLQQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|270262062|ref|ZP_06190334.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera 4Rx13] gi|270043938|gb|EFA17030.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera 4Rx13] Length = 312 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLESLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERF 199 >gi|262038871|ref|ZP_06012218.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] gi|261747122|gb|EEY34614.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] Length = 273 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 30/203 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + VSGG DS+ L+ H + DRS +F A+S++ RE+ ++ L Sbjct: 53 IAIGVSGGKDSLLLVKLFHELKKDRSRN-FEFKAVSLNPGFRES---DLSNFKRNLENLN 108 Query: 82 IAHSVVS---WK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV- 135 I +++ W+ N K + + R ++ + + + + H FDD +ET Sbjct: 109 IDCAIIDTNIWEIANEKAKDYPCFLCAKMRRGILYKKVEELGYNKLTLGHHFDDVIETTM 168 Query: 136 ----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 Y + + K SG NL + RP + R DI + + I Sbjct: 169 INMFYAGTLKTMTPKVKSTSG---------NLSLIRPLIYVREADIIEYTKENGIR---- 215 Query: 192 PSNTDDRFERVRV---RRFVRDI 211 P N E R RR V+D+ Sbjct: 216 PMNCGCTIEAGRTSSKRREVKDL 238 >gi|227505939|ref|ZP_03935988.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium striatum ATCC 6940] gi|227197461|gb|EEI77509.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium striatum ATCC 6940] Length = 321 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 19/185 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I V +SGG+DS+ L AL + D A+ +DH L++ + ++ + L Sbjct: 33 EIAVGLSGGADSLALTAALVAEGFD-------VEALCIDHGLQDGSAEQAAKAAAQAETL 85 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V+ +K + A + AHT DDQ ET+ + + Sbjct: 86 GARARVLKVDVAK-----QGSMEAAARVARYRAFAAATDAPVAVAHTADDQAETLLLGAL 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R ++GM T + + + RP L RR + + DP N+D F Sbjct: 141 RGK------VAGMLPTAEIE-GVQVVRPLLTVRRAQTLGACEELGLEPWYDPQNSDTNFR 193 Query: 201 RVRVR 205 RV +R Sbjct: 194 RVALR 198 >gi|160880393|ref|YP_001559361.1| PP-loop domain-containing protein [Clostridium phytofermentans ISDg] gi|160429059|gb|ABX42622.1| PP-loop domain protein [Clostridium phytofermentans ISDg] Length = 242 Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 20/200 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ LL AL + R F KF+ ++ L D + ++ +C L Sbjct: 26 IAIGISGGKDSLTLLYALAGL---RRFYPKKFTLEAITVSLGFDNFDTSK-IAALCKELD 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++VV+ ++ ++ + + R ++ AK + AH DD +ET Sbjct: 82 VNYTVVNTDIAPIIFETRKESNPCSLCAKMRKGAFNDKAKELGCNKSAYAHHKDDVIETT 141 Query: 136 YMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M R Y + T L +++ + RP + D+ F N+S ++P Sbjct: 142 LMSLLFEGRYYTFSPI-------TYLDRMDITLIRPLIYVDEVDVIGFKNAYNLSVLKNP 194 Query: 193 SNTDDRFERVRVRRFVRDID 212 D +R + V+ ++ Sbjct: 195 CPIDGYTKREYAKNLVKQLN 214 >gi|326202249|ref|ZP_08192118.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782] gi|325987367|gb|EGD48194.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782] Length = 239 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DSM LL AL L + K + AIS+ + + V + C ++ Sbjct: 27 IAVGVSGGKDSMTLLTALRQ-LQNFYPKKFELEAISLTMGI---GNADYTPVVEYCKQIG 82 Query: 82 IAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + +SV +N K + A R R AL ++ AK + + H DD + Sbjct: 83 VNYSVEETLIGKIIFEVRNEKNPCSMCANLR--RGALHNK-AKKLGCNKVALGHHRDDAV 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + S Y + S + T L +L++ RP + + I++ + ++ + P Sbjct: 140 ETLLLSSF--YEGRIHTFSPV--TYLDRQDLYLIRPLIYTEEKQIKAVVKSESLPIVKSP 195 Query: 193 SNTDDRFERVRVRRFVRDI 211 + D + +R ++ + ++ Sbjct: 196 CHVDGKTKRQYIKDLILEL 214 >gi|229521531|ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gi|229341629|gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] Length = 310 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|206578688|ref|YP_002238857.1| PP-loop family protein [Klebsiella pneumoniae 342] gi|288935785|ref|YP_003439844.1| PP-loop domain protein [Klebsiella variicola At-22] gi|290509811|ref|ZP_06549182.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55] gi|254790132|sp|B5XRN3|TTCA_KLEP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|206567746|gb|ACI09522.1| PP-loop family protein [Klebsiella pneumoniae 342] gi|288890494|gb|ADC58812.1| PP-loop domain protein [Klebsiella variicola At-22] gi|289779205|gb|EFD87202.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55] Length = 311 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|167749764|ref|ZP_02421891.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702] gi|167657247|gb|EDS01377.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702] Length = 241 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL L + R F + + +A+++D + V+ +C + Sbjct: 24 IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYDAVARLCEK 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + S+V + + + + + R + + AK + H DD +E Sbjct: 80 LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M + E +G T L ++ + RP + + S + N+ + Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNNLEIVKSVC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R + + F+RD++ K++ F LR Sbjct: 196 PADKTTSRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|153217159|ref|ZP_01950923.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153803581|ref|ZP_01958167.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153827170|ref|ZP_01979837.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153830588|ref|ZP_01983255.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515797|ref|ZP_04405256.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] gi|229523484|ref|ZP_04412889.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] gi|254286121|ref|ZP_04961081.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262190246|ref|ZP_06048519.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] gi|297579020|ref|ZP_06940948.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|124113825|gb|EAY32645.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124120879|gb|EAY39622.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|148873915|gb|EDL72050.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149738932|gb|EDM53254.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150423790|gb|EDN15731.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|229337065|gb|EEO02082.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] gi|229347566|gb|EEO12526.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] gi|262033864|gb|EEY52331.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] gi|297536614|gb|EFH75447.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 310 Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|262042928|ref|ZP_06016073.1| PP-loop family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039768|gb|EEW40894.1| PP-loop family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 326 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 57 IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 113 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 114 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 172 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 173 LFLNIFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 214 >gi|320186802|gb|EFW61523.1| C32 tRNA thiolase [Shigella flexneri CDC 796-83] gi|332094958|gb|EGI99998.1| PP-loop family protein [Shigella boydii 3594-74] Length = 311 Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|229529498|ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] gi|229333272|gb|EEN98758.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] Length = 310 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|256833319|ref|YP_003162046.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603] gi|256686850|gb|ACV09743.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603] Length = 339 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 50/262 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDV- 76 + VA SGG+DS+ + L V R + + SA VDH L ++A+ V R + D+ Sbjct: 28 VAVACSGGADSLAVAATLAHVGPRRGW---QISAFIVDHDLHPDSAQVSVVAARQLIDLG 84 Query: 77 -----CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +R+ +AH + P+ A A L ++H + I+ HT DDQ Sbjct: 85 FPHVTITRVTVAHGP---GHGGPEAAARTARYAALDRLRTQHGVDV----ILLGHTRDDQ 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+V + R + LSG+ + + RPFL R ++ D Sbjct: 138 AESVLLGLARGSGAR--SLSGIRPRTGHYV-----RPFLSLTRAATEEICSLHEVNVWHD 190 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 P+NTD + LR +V V L+ L + +A Sbjct: 191 PTNTD-----------------------ITPQGPLRSQVRGVVIPLMENVLGPGVADALA 227 Query: 252 ISQDILNIDSTLLFYLLRVSAA 273 + D+L+ D+ L R + A Sbjct: 228 RTADLLHADAEALEQWARTAQA 249 >gi|187732105|ref|YP_001880184.1| C32 tRNA thiolase [Shigella boydii CDC 3083-94] gi|205830633|sp|B2U0Z1|TTCA_SHIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|187429097|gb|ACD08371.1| PP-loop family protein [Shigella boydii CDC 3083-94] Length = 311 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|147674407|ref|YP_001216989.1| hypothetical protein VC0395_A1043 [Vibrio cholerae O395] gi|262169273|ref|ZP_06036965.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27] gi|205830637|sp|A5F888|TTCA_VIBC3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|146316290|gb|ABQ20829.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013348|gb|ACP09558.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022086|gb|EEY40795.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27] Length = 310 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLDSLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|238894461|ref|YP_002919195.1| C32 tRNA thiolase [Klebsiella pneumoniae NTUH-K2044] gi|238546777|dbj|BAH63128.1| hypothetical protein KP1_2451 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 311 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|221214714|ref|ZP_03587683.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia multivorans CGD1] gi|221165253|gb|EED97730.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia multivorans CGD1] Length = 154 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 11/150 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A + R+ G + A+ V H L Sbjct: 14 LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDA-----AVRAAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMT 124 A + + +RL +A + + G+ A+ARE RYA + + A + Sbjct: 69 ADAWAAHAREQAARLGVAFDAMHVDVPRDSGVGIEASARERRYAALDAMCERHGAAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 A DDQ ETV ++ R G G++G+ Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLA 153 >gi|152969928|ref|YP_001335037.1| C32 tRNA thiolase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|205830598|sp|A6T886|TTCA_KLEP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150954777|gb|ABR76807.1| hypothetical protein KPN_01375 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 311 Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|320174310|gb|EFW49465.1| C32 tRNA thiolase [Shigella dysenteriae CDC 74-1112] Length = 311 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L L+ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEIL---LNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|291556343|emb|CBL33460.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium siraeum V10Sc8a] Length = 241 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL L + R F + + +A+++D + V+ +C + Sbjct: 24 IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYDAVARLCEK 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + S+V + + + + + R + + AK + H DD +E Sbjct: 80 LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M + E +G T L ++ + RP + + S + N+ + Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNNLEIVKSVC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R + + F+RD++ K++ F LR Sbjct: 196 PADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|260893554|ref|YP_003239651.1| PP-loop domain protein [Ammonifex degensii KC4] gi|260865695|gb|ACX52801.1| PP-loop domain protein [Ammonifex degensii KC4] Length = 244 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ LL L + L D S AI +D +E ++ ++D CS+ Sbjct: 20 IAVGVSGGKDSVALLRIL-AHLRDYSHLSFSMVAIMIDPGWKEV---DIGPLADFCSKFD 75 Query: 82 IA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I H + +K + + + R L+ A ++ + H DD +ET + Sbjct: 76 IPFYLVKHPIARIIAAKGENNPCSLCAKLRSGLLYSKAVSLGCRRVALGHHLDDVIETFF 135 Query: 137 M 137 + Sbjct: 136 L 136 >gi|223983243|ref|ZP_03633437.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM 12042] gi|223964848|gb|EEF69166.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM 12042] Length = 407 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V VSGG DSM LL L R ++ V++ R TA + + V C I Sbjct: 12 IVGVSGGPDSMALLD-----LCRRH--RVSVVCAHVNYHHRPTADRDQQIVEAYCRNYAI 64 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 S K +G A AREARYA + A A ++ A DD LET ++ + Sbjct: 65 --PFYSLDPVKETSGNFQAWAREARYAFFARLAVQEAAAGVLIAQHLDDFLETALLQQE 121 >gi|117413399|ref|YP_851006.1| polyprotein [Blackberry virus Y] gi|123882345|sp|A0AUJ5|POLG_BVY3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1 proteinase; AltName: Full=N-terminal protein; Contains: RecName: Full=Helper component proteinase; Short=HC-pro; Contains: RecName: Full=Protein P3; Contains: RecName: Full=6 kDa protein 1; Short=6K1; Contains: RecName: Full=Cytoplasmic inclusion protein; Short=CI; Contains: RecName: Full=6 kDa protein 2; Short=6K2; Contains: RecName: Full=Viral genome-linked protein; AltName: Full=VPg; Contains: RecName: Full=Nuclear inclusion protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro; Contains: RecName: Full=Nuclear inclusion protein B; Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA polymerase; Contains: RecName: Full=Capsid protein; Short=CP; AltName: Full=Coat protein gi|116874513|gb|AAX87001.1| polyprotein [Blackberry virus Y] Length = 3491 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 327 TLILYPEETTVWDGRYQFQ---NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSK 383 TL + TTV+DGRY F+ + S + I QS D P IPP ++ AL + ++ Sbjct: 3091 TLYTCDDNTTVYDGRYDFEVPTDASGGVFIIDFQSSSGTDTPPVIPPATSEPALQPVLTR 3150 Query: 384 EGGKPLLAP 392 + +P P Sbjct: 3151 QTSRPPTPP 3159 >gi|187776786|ref|ZP_02993259.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC 15579] gi|187775445|gb|EDU39247.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC 15579] Length = 249 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 9/121 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRY--VSDV 76 I VAVSGG DS+ LL L ++ + I+ AI VD L E K + + + Sbjct: 32 IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMGLEPLKIFCKKNGIDLI 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + IA+ V + + K L + R+ +S K+I AT I H DD +ET++ Sbjct: 91 IEKTNIANVVFNERKDKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147 Query: 137 M 137 M Sbjct: 148 M 148 >gi|262183446|ref|ZP_06042867.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] Length = 324 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AHT DDQ ET+ + R ++GM + + + + RP L RR + Sbjct: 126 VAVAHTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETAC 178 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + +DP N D F RV +RR + Sbjct: 179 AELGLEVWQDPQNQDASFRRVALRREI 205 >gi|290475465|ref|YP_003468353.1| hypothetical protein XBJ1_2463 [Xenorhabdus bovienii SS-2004] gi|289174786|emb|CBJ81587.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 304 Score = 40.0 bits (92), Expect = 0.69, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS LL L ++ + + FS ++V+ ++ E Y+ ++ Sbjct: 37 IMVCLSGGKDSYTLLSILQNL---QKSAPVNFSLVAVNLDQKQPGFPEHILPAYLEELGI 93 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 94 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQR 184 V++ G L GM ++ D I RP CR +DI + R Sbjct: 153 VFLN-----MFYGGKLKGMPPKLISDDGKHIVIRPLAYCREKDIERYAEAR 198 >gi|269123992|ref|YP_003306569.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315318|gb|ACZ01692.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112] Length = 283 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 23/175 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +AVSGG DS+ L+ + D+ F +F A+S++ RE +++++ L Sbjct: 53 IAIAVSGGKDSLLLVKLFQELKKDKRFN-FEFKALSLNPGFRE---EDLKHFKFNLKELN 108 Query: 82 IAHSVVS---WK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I ++ WK N + R ++ ++ + + + H FDD +ET Sbjct: 109 IDCDIIDTNIWKVANEMANEYPCFLCAKMRRGILYKNIEKMGYNKLALGHHFDDVIETTL 168 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNI 186 + + G T+L + NL + RP + EDI F + I Sbjct: 169 IN---------LFYGGTLKTMLPKMPSTSGNLTLIRPMVNVHEEDIIKFTKKNGI 214 >gi|239629122|ref|ZP_04672153.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239519268|gb|EEQ59134.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 514 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 7/84 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH DDQ ET+ R G GL G+ I Y + I RP L R DI +L Sbjct: 188 IAVAHHSDDQAETILHNLFR-----GSGLGGL-KGISY-VRGRIIRPLLDIGRRDIVEWL 240 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + +W +D +N+ + R R+R Sbjct: 241 EENGCAWVQDSTNSSGHYTRNRIR 264 >gi|157736789|ref|YP_001489472.1| hypothetical protein Abu_0536 [Arcobacter butzleri RM4018] gi|315635969|ref|ZP_07891230.1| PP-loop family protein [Arcobacter butzleri JV22] gi|157698643|gb|ABV66803.1| conserved hypothetical protein [Arcobacter butzleri RM4018] gi|315479753|gb|EFU70425.1| PP-loop family protein [Arcobacter butzleri JV22] Length = 261 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 17/186 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV SGG DS+ L+ +L+ + + +F A++V + + E +V ++S+ C Sbjct: 28 VLVGFSGGKDSLTLIHSLNRLKKVVPY-NFEFKAVTVTYGMGE----QVEFLSNHCKEHG 82 Query: 82 IAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H ++ + + + + + R + A + H DD +E+ Sbjct: 83 IEHEIINTEIFELAGEKIRKNSSFCSFFSRMRRGYLYSTALEQGYNKVALGHHLDDAMES 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M ++ G + M + L + RP + CR +R+F I D + Sbjct: 143 FFM----NFFYNGT-MRTMPPIYKAENGLEVIRPLIFCRERQLRAFANTNEIRVIGDEAC 197 Query: 195 TDDRFE 200 RF+ Sbjct: 198 PGLRFD 203 >gi|152993337|ref|YP_001359058.1| hypothetical protein SUN_1754 [Sulfurovum sp. NBC37-1] gi|151425198|dbj|BAF72701.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 265 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 24/183 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS+ L+ L + F + +F A +V + + + D ++S C Sbjct: 38 VLVGLSGGKDSLALVHGLKHIQRHAPF-RFEFEACTVKYGMPDEHYD---FLSKHCEEYG 93 Query: 82 IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H+V +S + + + R + A+ + H FDD +E+ Sbjct: 94 IKHTVYDTNIFEISHNTIRENSSFCSYFSRMRRGALYTFAEQGGFNKVALGHHFDDTVES 153 Query: 135 VYMRSQRDYAEKGMGLSGMCDTI--LYDL--NLWISRPFLRCRREDIRSFLLQRNISWCE 190 +M M +G + +Y + RP ++ R +R+F N+ Sbjct: 154 FFM---------NMFYNGTMRALAPIYKTGRGFHLIRPLIQARESQLRAFADDNNLQVIG 204 Query: 191 DPS 193 D + Sbjct: 205 DEA 207 >gi|90420934|ref|ZP_01228839.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans SI85-9A1] gi|90334909|gb|EAS48681.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans SI85-9A1] Length = 305 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 22/204 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A LV +SGG DS LL AL S L R + A ++D K + D SR Sbjct: 73 ARWLVGLSGGKDSYALL-ALLSDLKYRGLLPVDILACNLDQGQPNFPK---HVLPDFLSR 128 Query: 80 LRIAH--------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H SVV+ K T +R R L A+ ++ H DD Sbjct: 129 YDIPHRIEYRDTYSVVTEKVPSNATYCALCSRLRRGNLY-RIAREEGCEALVLGHHADDC 187 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSF--LLQRNISW 188 LET +M G LS M ++ D +L + RP +R EDI F ++ I Sbjct: 188 LETFFMN-----LFHGGRLSAMPAKLINDEGDLMVLRPLIRSVEEDIAKFSAAMKFPIIP 242 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 C D + D +R ++ + D++ Sbjct: 243 C-DLCGSQDGLQRNVTKQMIADLE 265 >gi|157370847|ref|YP_001478836.1| C32 tRNA thiolase [Serratia proteamaculans 568] gi|205830624|sp|A8GF18|TTCA_SERP5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157322611|gb|ABV41708.1| PP-loop domain protein [Serratia proteamaculans 568] Length = 310 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLESLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYQIVEENTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERF 199 >gi|322371601|ref|ZP_08046147.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253] gi|320548892|gb|EFW90560.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253] Length = 322 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ +SGG DS+ L LH ++ +I+ A+++ + + ++ L I Sbjct: 57 LIGLSGGKDSVVLTKILHDTFAEDP--RIELVALTIHEGIEGYRDKSLDACLELTDDLDI 114 Query: 83 AHSVVSWKNS----------KPQTGLMAAAREA--RYALISEHAKTINATLIMTAHTFDD 130 H VVS++ K + A A R L+S++A+ A ++T H DD Sbjct: 115 RHEVVSYEEEFDLRMDDVVGKDPENMAACAYCGVFRRDLLSKYAEEYGANKLLTGHNLDD 174 Query: 131 QLETVYM 137 + ET M Sbjct: 175 EAETALM 181 >gi|237756505|ref|ZP_04585036.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691334|gb|EEP60411.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense SS-5] Length = 452 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 14/188 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS+ L L ++ ++ ++H LR+ + + + S L Sbjct: 22 ILVAFSGGPDSLVLTNLLLKF--QKTLNILEIQLAHLNHALRKESDQDQEFCEKFASSLG 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA----RYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V K L + EA RY ++ + N + I T H D E++ + Sbjct: 80 LKIHVKKVDVKKVAKELKISVEEAGRLERYKFFNKILQKENLSKIATGHHLSDLTESIVL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + G S + I+ RP +E+I + + + + D SN Sbjct: 140 WFIQGNKRGLKGFSPKENNII--------RPLYLITKEEIEEYCQKNGLVYLVDQSNFSR 191 Query: 198 RFERVRVR 205 ++ R +VR Sbjct: 192 KYLRNQVR 199 >gi|227834068|ref|YP_002835775.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] gi|227455084|gb|ACP33837.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] Length = 317 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AHT DDQ ET+ + R ++GM + + + + RP L RR + Sbjct: 119 VAVAHTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208 + + +DP N D F RV +RR + Sbjct: 172 AELGLEVWQDPQNQDASFRRVALRREI 198 >gi|82544200|ref|YP_408147.1| C32 tRNA thiolase [Shigella boydii Sb227] gi|123559537|sp|Q320D9|TTCA_SHIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|81245611|gb|ABB66319.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 311 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + T I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGTTKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|37679865|ref|NP_934474.1| ATPase [Vibrio vulnificus YJ016] gi|320156359|ref|YP_004188738.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus MO6-24/O] gi|81757527|sp|Q7MKU7|TTCA_VIBVY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|37198610|dbj|BAC94445.1| predicted ATPase [Vibrio vulnificus YJ016] gi|319931671|gb|ADV86535.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus MO6-24/O] Length = 310 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 29/170 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I FS ++V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFSLVAVNLDQKQPGFPAHVLPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 DD LET+++ KGM + D + + RP CR +DI Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|332796837|ref|YP_004458337.1| PP-loop domain-containing protein [Acidianus hospitalis W1] gi|332694572|gb|AEE94039.1| PP-loop domain protein [Acidianus hospitalis W1] Length = 319 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 19/137 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L+ IL+AVSGG DS+ L L S + + + +E A+ +Y+ Sbjct: 42 QGLLKANKILLAVSGGKDSLTLADTLASFIDPKRLVAFNIVEGISGYNRKEQAEKLRKYL 101 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTIN 118 D L I S+K+S T ++++AR R LI++ + + Sbjct: 102 DD----LGIELISTSFKDSVGYTLDEMVSSARAKGLNISACTFCGGFRRKLINDAGRQVK 157 Query: 119 ATLIMTAHTFDDQLETV 135 A L+ T H DD+ +TV Sbjct: 158 ADLVATGHNLDDEAQTV 174 >gi|88859652|ref|ZP_01134292.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2] gi|88818669|gb|EAR28484.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2] Length = 304 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V +SGG DS + L S+ + IKF I+V+ ++ E + L Sbjct: 40 IMVCMSGGKDSYTMFDILQSL---QRAAPIKFELIAVNLDQKQPGFPE-HVLPQYFESLG 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V K T ++ + R ++ AK + AT I H DD +ET Sbjct: 96 VEYKIVEEDTYKIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM D D + RP C+ DI + Sbjct: 156 LFLNMFYGGKLKGMPAKLASD----DGQHMVIRPLAYCKEADIEEY 197 >gi|271500278|ref|YP_003333303.1| PP-loop domain-containing protein [Dickeya dadantii Ech586] gi|270343833|gb|ACZ76598.1| PP-loop domain protein [Dickeya dadantii Ech586] Length = 313 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM + D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLVSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232 >gi|261367670|ref|ZP_05980553.1| PP-loop family protein [Subdoligranulum variabile DSM 15176] gi|282570463|gb|EFB75998.1| PP-loop family protein [Subdoligranulum variabile DSM 15176] Length = 252 Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 24/218 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKD-----EVRYVS 74 ++V VSGG DS+ L IAL + R++ + F A+++D C D E+ Sbjct: 27 VMVGVSGGKDSVVLTIALGRL---RAYLGVPFEVQAVTLDPCFGGVETDYSPLSELFAAE 83 Query: 75 DVCSRLR---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ +R I V ++ L A + R + A+ + + H DD Sbjct: 84 NIPYEVRRTDIGPVVFDYRKESNPCALCA---KLRRGTLHTAAQQLGCNKVALGHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET YM R+ G G + Y +L + RP L ++ S + + + Sbjct: 141 VETFYMNLWRE------GRIGCFSPVTYLSRRDLTMIRPLLLATESEVTSAVKRAGLPVI 194 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + D R ++FVR+ + K L+ Sbjct: 195 KSRCPADGVTTREETKQFVREFSRKDPAFRQKTLHALQ 232 >gi|24113173|ref|NP_707683.1| C32 tRNA thiolase [Shigella flexneri 2a str. 301] gi|30062867|ref|NP_837038.1| C32 tRNA thiolase [Shigella flexneri 2a str. 2457T] gi|110805759|ref|YP_689279.1| C32 tRNA thiolase [Shigella flexneri 5 str. 8401] gi|81723327|sp|Q83KS7|TTCA_SHIFL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123048160|sp|Q0T3Z1|TTCA_SHIF8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|24052163|gb|AAN43390.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041115|gb|AAP16845.1| hypothetical protein S1448 [Shigella flexneri 2a str. 2457T] gi|110615307|gb|ABF03974.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281601229|gb|ADA74213.1| ATPase [Shigella flexneri 2002017] gi|313650582|gb|EFS14985.1| PP-loop family protein [Shigella flexneri 2a str. 2457T] gi|332757685|gb|EGJ88016.1| PP-loop family protein [Shigella flexneri 4343-70] gi|332760198|gb|EGJ90494.1| PP-loop family protein [Shigella flexneri K-671] gi|332767615|gb|EGJ97808.1| C32 tRNA thiolase [Shigella flexneri 2930-71] gi|333004457|gb|EGK23987.1| PP-loop family protein [Shigella flexneri VA-6] gi|333004753|gb|EGK24275.1| PP-loop family protein [Shigella flexneri K-218] gi|333007299|gb|EGK26781.1| PP-loop family protein [Shigella flexneri K-272] gi|333018636|gb|EGK37930.1| PP-loop family protein [Shigella flexneri K-304] gi|333019295|gb|EGK38579.1| PP-loop family protein [Shigella flexneri K-227] Length = 311 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + T I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGTTKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI+ F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199 >gi|297544802|ref|YP_003677104.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842577|gb|ADH61093.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 235 Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 I V VSGG DS+ LL LH + ++F KF + + L D + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTLGYDNFDP-KPVENFCREKE 79 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R R AL + AK + AH +DD + Sbjct: 80 IPFFIKETEIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + R +R + D+ Sbjct: 188 VVKNPCPVEGHTTRHYIRNLIIDL 211 >gi|315605195|ref|ZP_07880242.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313116|gb|EFU61186.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 254 Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 SEHA ++ HT +DQ ETV +R R L + + + RP L Sbjct: 18 SEHAP------VLLGHTMEDQAETVLLRLARGSGPSS--LRAIAPLARDEAGVTWLRPLL 69 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDD 197 RR D Q ++ EDP+N D Sbjct: 70 GLRRADTAGACAQAGLTPVEDPTNAVD 96 >gi|213580971|ref|ZP_03362797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 224 Score = 39.7 bits (91), Expect = 0.87, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|304396028|ref|ZP_07377910.1| PP-loop domain protein [Pantoea sp. aB] gi|304356397|gb|EFM20762.1| PP-loop domain protein [Pantoea sp. aB] Length = 311 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + + FS I+V+ ++ E +Y+ Sbjct: 42 IMVCLSGGKDSYTMLEILRSL---QKSAPVNFSLIAVNLDQKQPGFPEHILPQYLEAQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI +S+V K + +T +R R ++ A + T I H DD L+T Sbjct: 99 EYRIIEEDTYSIVKEKVPEGKTTCSLCSR-LRRGILYRVATELGCTKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199 >gi|261211593|ref|ZP_05925880.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341] gi|260838943|gb|EEX65575.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341] Length = 310 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 29/170 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I F I+V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLEILMSL---QKSAPISFELIAVNLDQKQPGFPAHVLPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 DD LET+++ KGM + D + + RP CR +DI Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|238926101|ref|ZP_04657861.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531] gi|238885991|gb|EEQ49629.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531] Length = 260 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 30/171 (17%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HIL+ VSGG DS+ L AL ++L +R +A +V+ + +V ++ C L Sbjct: 28 HILIGVSGGKDSIFLTYAL-AILRERLKKDFTIAAFTVNPQFDDPFDTDV--IAAFCKSL 84 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREA---------RYALISEHAKTINATLIMTAHTFDDQ 131 + + VV + G +A E R +++ +AK + + AH DD Sbjct: 85 DVPYEVVDVDIA----GAIAEQEEKSPCFTCAFFRRGVVNRYAKEHHMNKVAYAHHHDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDI 177 +ET M + SG +T L + + RP + R ++I Sbjct: 141 VETFLM---------SLFYSGQLNTFRPKTYLDKTGITVIRPLVYFREQEI 182 >gi|124027476|ref|YP_001012796.1| ATPase [Hyperthermus butylicus DSM 5456] gi|123978170|gb|ABM80451.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus DSM 5456] Length = 331 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 17/131 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDVC 77 I+VAVSGG DSM LL L LS R G + +A+ VD +R T + +R+V + Sbjct: 38 IVVAVSGGKDSMSLLHYLLR-LSKRVPG-WRVAALLVDEGIRGYREYTIERFLRFVEEHG 95 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLIMTAH 126 RIA + + + + R Y L+++ A+ + AT++ TAH Sbjct: 96 VEYRIARFRDEFGYTLDEIVKIGKERGLPYLPCTYCGVFRRYLMNKTAREMGATVVATAH 155 Query: 127 TFDDQLETVYM 137 DD ++T M Sbjct: 156 NLDDLVQTYLM 166 >gi|188533797|ref|YP_001907594.1| C32 tRNA thiolase [Erwinia tasmaniensis Et1/99] gi|254790128|sp|B2VKN8|TTCA_ERWT9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|188028839|emb|CAO96701.1| Predicted ATPase of the PP-loop superfamily [Erwinia tasmaniensis Et1/99] Length = 309 Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 29/178 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + I FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPAHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ +I +S+V K + +T +R R ++ A + T I H Sbjct: 92 YLEQQGVEYKIVDEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCTKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIERFAIARQ 204 >gi|160915129|ref|ZP_02077342.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991] gi|158432928|gb|EDP11217.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991] Length = 319 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 29/210 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DSM LL ALH F F + + H + R V C +L Sbjct: 26 IAVGVSGGKDSMVLLSALHMY---SKFKGKNFQVVGI-HIKLGFPNMDFREVVSYCEQLG 81 Query: 82 IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I ++ K N + L + ++ A + E AK N + H DD Sbjct: 82 IEFHIIDSKVYEILQKHPDANGNIKCSLCSKFKK---ATVIEAAKQFNCHKVAFGHHSDD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET+ M A G L+ + + ++ RP + EDI + NI + Sbjct: 139 AVETLLMN-----AIFGGKLAVFLPKMYMSRTDITFIRPLIYAFEEDILIAQQKNNIPYV 193 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 E D +R ++ LH Y K Sbjct: 194 ESTCPNDGFTQRQEMKEM-----LHEFYKK 218 >gi|308186953|ref|YP_003931084.1| UPF0021 protein [Pantoea vagans C9-1] gi|308057463|gb|ADO09635.1| UPF0021 protein [Pantoea vagans C9-1] Length = 311 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + + FS I+V+ ++ E +Y+ Sbjct: 42 IMVCLSGGKDSYTMLEILRSL---QKSAPVNFSLIAVNLDQKQPGFPEHILPQYLESQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI +S+V K + +T +R R ++ A + T I H DD L+T Sbjct: 99 EYRIVEEDTYSIVKDKVPEGKTTCSLCSR-LRRGILYRVATELGCTKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199 >gi|312194202|ref|YP_004014263.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c] gi|311225538|gb|ADP78393.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c] Length = 603 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 27/205 (13%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR V L A +LVA SGG DS+ L A V R+ ++ ++VDH + Sbjct: 29 AVRHAVADLPPGALVLVACSGGPDSLALAAATAFVAPRRA---LRAGLLTVDHGWDGASD 85 Query: 68 DEVRYVSDVCSRLR-------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 V LR +AHS S ++ +AR A ++ A+ + A Sbjct: 86 QRAESVVAQGRALRLDPVELLVAHSARSEGAAR----------DARRAALAAAAERLGAA 135 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ HT DDQ ETV +R R + +G D +L L R+E R+ Sbjct: 136 ALLLGHTLDDQAETVLLRLARGAGARSLGAMSPRDGLLRRP-------LLGLRKEQTRAA 188 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + EDP+N D F R RVR Sbjct: 189 CRAEGLDVWEDPTNADAAFARARVR 213 >gi|238919821|ref|YP_002933336.1| C32 tRNA thiolase [Edwardsiella ictaluri 93-146] gi|238869390|gb|ACR69101.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 332 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78 ++V +SGG DS +L L ++ + + F+ ++V+ ++ E Y+ + Sbjct: 63 VMVCLSGGKDSYTMLEILRNL---QQSAPVDFTLVAVNLDQKQPGFPETVLPAYLENQGI 119 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI + +V K + +T +R R ++ A ++ I H DD LET Sbjct: 120 EYRIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTANELHCNKIALGHHRDDMLET 178 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 179 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 220 >gi|22125890|ref|NP_669313.1| C32 tRNA thiolase [Yersinia pestis KIM 10] gi|45441914|ref|NP_993453.1| C32 tRNA thiolase [Yersinia pestis biovar Microtus str. 91001] gi|108807679|ref|YP_651595.1| C32 tRNA thiolase [Yersinia pestis Antiqua] gi|108811956|ref|YP_647723.1| C32 tRNA thiolase [Yersinia pestis Nepal516] gi|145598114|ref|YP_001162190.1| C32 tRNA thiolase [Yersinia pestis Pestoides F] gi|149365753|ref|ZP_01887788.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125] gi|153947235|ref|YP_001400777.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 31758] gi|162419399|ref|YP_001606655.1| C32 tRNA thiolase [Yersinia pestis Angola] gi|165926443|ref|ZP_02222275.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938602|ref|ZP_02227158.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010640|ref|ZP_02231538.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210960|ref|ZP_02236995.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400851|ref|ZP_02306357.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422098|ref|ZP_02313851.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424807|ref|ZP_02316560.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467094|ref|ZP_02331798.1| PP-loop family protein [Yersinia pestis FV-1] gi|170024151|ref|YP_001720656.1| C32 tRNA thiolase [Yersinia pseudotuberculosis YPIII] gi|218929427|ref|YP_002347302.1| C32 tRNA thiolase [Yersinia pestis CO92] gi|229837856|ref|ZP_04458015.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895014|ref|ZP_04510192.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Pestoides A] gi|229898417|ref|ZP_04513564.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. India 195] gi|229902264|ref|ZP_04517384.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Nepal516] gi|270490553|ref|ZP_06207627.1| PP-loop family protein [Yersinia pestis KIM D27] gi|294503652|ref|YP_003567714.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003] gi|123072798|sp|Q1C7C2|TTCA_YERPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123073391|sp|Q1CIQ7|TTCA_YERPN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123777122|sp|Q7CIP8|TTCA_YERPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830672|sp|A7FHP9|TTCA_YERP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830674|sp|A9R8Q5|TTCA_YERPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830675|sp|A4TIV5|TTCA_YERPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830676|sp|B1JJU2|TTCA_YERPY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|21958825|gb|AAM85564.1|AE013802_9 hypothetical protein y1998 [Yersinia pestis KIM 10] gi|45436777|gb|AAS62330.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Yersinia pestis biovar Microtus str. 91001] gi|108775604|gb|ABG18123.1| hypothetical protein YPN_1794 [Yersinia pestis Nepal516] gi|108779592|gb|ABG13650.1| hypothetical protein YPA_1684 [Yersinia pestis Antiqua] gi|115348038|emb|CAL20963.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209810|gb|ABP39217.1| hypothetical protein YPDSF_0811 [Yersinia pestis Pestoides F] gi|149292166|gb|EDM42240.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125] gi|152958730|gb|ABS46191.1| PP-loop family protein [Yersinia pseudotuberculosis IP 31758] gi|162352214|gb|ABX86162.1| PP-loop family protein [Yersinia pestis Angola] gi|165913476|gb|EDR32097.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165921664|gb|EDR38861.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990342|gb|EDR42643.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166208140|gb|EDR52620.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958910|gb|EDR55931.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049704|gb|EDR61112.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055994|gb|EDR65772.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750685|gb|ACA68203.1| PP-loop domain protein [Yersinia pseudotuberculosis YPIII] gi|229680599|gb|EEO76695.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Nepal516] gi|229688707|gb|EEO80776.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. India 195] gi|229694222|gb|EEO84269.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702109|gb|EEO90130.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Pestoides A] gi|262362230|gb|ACY58951.1| hypothetical protein YPD4_2044 [Yersinia pestis D106004] gi|262365563|gb|ACY62120.1| hypothetical protein YPD8_1435 [Yersinia pestis D182038] gi|270339057|gb|EFA49834.1| PP-loop family protein [Yersinia pestis KIM D27] gi|294354111|gb|ADE64452.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003] gi|320014992|gb|ADV98563.1| putative magnesium chelatase family protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 313 Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L S+ + I FS I+V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLDILQSL---QKSAPINFSLIAVNLDQKQPGFPEDILPAYLDKQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F + R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257 >gi|313621001|gb|EFR92131.1| bifunctional protein TilS/hprT [Listeria innocua FSL S4-378] Length = 125 Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 7/90 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS L LH + S K + ++H LRE A+ E V C Sbjct: 24 LLVAVSGGPDSFAL---LHFLWSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARY 107 I + V + K Q G+ AR RY Sbjct: 81 IPFFIEEVDVKKRAEKLQKGIEETARIVRY 110 >gi|213647076|ref|ZP_03377129.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 268 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|161503260|ref|YP_001570372.1| C32 tRNA thiolase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|205830622|sp|A9MQT5|TTCA_SALAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|160864607|gb|ABX21230.1| hypothetical protein SARI_01329 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 311 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|59711918|ref|YP_204694.1| C32 tRNA thiolase [Vibrio fischeri ES114] gi|197335040|ref|YP_002156106.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11] gi|75353997|sp|Q5E590|TTCA_VIBF1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790149|sp|B5FE41|TTCA_VIBFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|59480019|gb|AAW85806.1| predicted C32 tRNA thiolase [Vibrio fischeri ES114] gi|197316530|gb|ACH65977.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11] Length = 307 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 31/179 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I F I+V+ H L E Sbjct: 39 IMVCLSGGKDSFTMLDILMSL---KKSAPISFDLIAVNLDQKQPGFPAHILPE------- 88 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 89 YLEKLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 147 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRN 185 DD LET+++ G L GM ++ D + RP CR +DI + R+ Sbjct: 148 RDDILETMFLN-----MFYGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRD 201 >gi|258623292|ref|ZP_05718298.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus VM573] gi|262165675|ref|ZP_06033412.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223] gi|258584424|gb|EEW09167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus VM573] gi|262025391|gb|EEY44059.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223] Length = 310 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 29/170 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I F ++V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---KKSAPISFELVAVNLDQKQPGFPAHVLPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 DD LET+++ KGM + D + + RP CR +DI Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|251773216|gb|EES53768.1| TRNA(Ile)-lysidine synthetase [Leptospirillum ferrodiazotrophum] Length = 439 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%) Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 A ++E+ +++ + H DD++ETV R +G L G+ + N I R Sbjct: 53 AYLAENPRSV----LFLGHQKDDRIETVLANLFRGTGPRG--LVGIPEK-----NGKIYR 101 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 P L RE+IR L + ++ EDP+N D R R+R +R Sbjct: 102 PLLFLEREEIRQALREAGEAFMEDPANFDLGPLRNRIRLELR 143 >gi|119896776|ref|YP_931989.1| C32 tRNA thiolase [Azoarcus sp. BH72] gi|205830554|sp|A1K2P7|TTCA_AZOSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|119669189|emb|CAL93102.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 306 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 13/165 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V VSGG DS LL L + L +R+ + A+++D + D+V Y + Sbjct: 44 VMVCVSGGKDSYTLLSCLLA-LRERAPVDFRIVAMNLDQ-KQPGFPDDVLPAYFESIGVE 101 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI +S+V K + +T +R R +I AK I AT I H DD LET+ Sbjct: 102 YRIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGIIYRTAKEIGATRIALGHHRDDMLETL 160 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ K M + D D + RP C DI F Sbjct: 161 FLNMFFGGKIKAMPPKLVSD----DGQHVVIRPLAYCTENDIERF 201 >gi|307131365|ref|YP_003883381.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii 3937] gi|306528894|gb|ADM98824.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii 3937] Length = 313 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + + FS ++V+ ++ E +Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM + D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLVSD----DGKHVVIRPLAYCREKDIERF 199 >gi|259908376|ref|YP_002648732.1| C32 tRNA thiolase [Erwinia pyrifoliae Ep1/96] gi|224963998|emb|CAX55503.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Erwinia pyrifoliae Ep1/96] gi|283478316|emb|CAY74232.1| UPF0021 protein HI1371.1 [Erwinia pyrifoliae DSM 12163] Length = 310 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + + FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ A + + I H Sbjct: 92 YLEQLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD L+T+++ KGM M D D + RP CR +DI+ F + R Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAIARQ 204 >gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4] gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4] Length = 307 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 21/143 (14%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVC 77 A ++VA+SGG DS L+ A VL + + F VD + E + D R V D C Sbjct: 48 ARVVVALSGGKDS--LVTAF--VLKRLGYEVLGFF---VDLGIEENNFSLDSRRAVEDFC 100 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYA---------LISEHAKTINATLIMTAHTF 128 I V S K +T A R+ R L++E+A +NA + T HT Sbjct: 101 REKEIPLEVFSLKEKFGKTIPEVARRQERICALCGVTKRHLMNEYALAVNAYALATGHTL 160 Query: 129 DDQLETVYMRSQR---DYAEKGM 148 DD ++ R Y KG+ Sbjct: 161 DDMAASLLANLTRWDLHYLAKGL 183 >gi|168819457|ref|ZP_02831457.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|200390490|ref|ZP_03217101.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602935|gb|EDZ01481.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205343858|gb|EDZ30622.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085852|emb|CBY95628.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 311 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|241668719|ref|ZP_04756297.1| hypothetical protein FphipA2_08125 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877251|ref|ZP_05249961.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843272|gb|EET21686.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 252 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 16/198 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 33 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSKLRAYLDDLGVSY 91 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD +E++ Sbjct: 92 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIESLL 150 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S I D + RP + + D+ F + N P N Sbjct: 151 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 204 Query: 195 -TDDRFERVRVRRFVRDI 211 + + +R +V++ ++D+ Sbjct: 205 GSQENLKRKKVKKLIQDL 222 >gi|257091915|ref|YP_003165556.1| PP-loop domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044439|gb|ACV33627.1| PP-loop domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 28/205 (13%) Query: 22 ILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV--RYVSD 75 +LV VSGG DS + LLIAL R + F I+++ ++ EV Y++ Sbjct: 34 VLVCVSGGKDSHTLLSLLIAL------RERAPVNFRVIAMNLDQKQPGFPAEVLPDYLAK 87 Query: 76 VCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + RI ++VV K + +T +R R +I AK + A I H DD Sbjct: 88 IGVDYRIVEQDTYAVVKDKIPEGKTTCSLCSR-LRRGVIYRTAKELGANKIALGHHRDDI 146 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCE 190 + T+++ G L M + D + RP CR DI F R + + Sbjct: 147 VHTLFLN-----LFFGGQLKAMPPKLRTDDGCHVVIRPLAYCRESDIARF--ARGMEYPI 199 Query: 191 DPSN---TDDRFERVRVRRFVRDID 212 P N + D +R ++R + D D Sbjct: 200 IPCNLCGSQDNLQRQKIREMMADWD 224 >gi|16760232|ref|NP_455849.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141999|ref|NP_805341.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053470|ref|ZP_03346348.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416969|ref|ZP_03350113.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213614398|ref|ZP_03371224.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289823675|ref|ZP_06543287.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81514744|sp|Q8Z783|TTCA_SALTI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|25305888|pir||AC0663 conserved hypothetical protein STY1412 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502527|emb|CAD01676.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137628|gb|AAO69190.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 311 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|168462890|ref|ZP_02696821.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443213|ref|YP_002040903.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198242873|ref|YP_002215492.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352663|ref|YP_002226464.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856831|ref|YP_002243482.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254790139|sp|B5FUP1|TTCA_SALDC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790140|sp|B5R4D8|TTCA_SALEP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790141|sp|B5RA25|TTCA_SALG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790143|sp|B4T6P5|TTCA_SALNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|16611693|gb|AAL27304.1|AF370716_7 YdaO [Salmonella enterica subsp. enterica serovar Enteritidis] gi|194401876|gb|ACF62098.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195633936|gb|EDX52288.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937389|gb|ACH74722.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272444|emb|CAR37331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708634|emb|CAR32956.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326623238|gb|EGE29583.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627729|gb|EGE34072.1| YdaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 311 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|310798106|gb|EFQ32999.1| PP-loop family protein [Glomerella graminicola M1.001] Length = 842 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 17/161 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------KFSAISVDHCLRETAKDEVRY 72 P I +AVSGG DSM L + + ++ K SA+ VDH LR + E + Sbjct: 65 PRRIGLAVSGGVDSMALAYLFNRLREVNPLVRVVDNPLTKISALVVDHGLRPGSDAEAQG 124 Query: 73 VSDVCSRLRI--AH-SVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIM 123 V+ LR AH V+W+ + L +AAR ARY + ++ + Sbjct: 125 VARELRTLRYLRAHIDRVNWRAEGVEGDPAALPNLESAARRARYRRLGIFCAALHIESLF 184 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCD-TILYDLN 162 AH DDQ ETV MR + +G+ G+S + YD++ Sbjct: 185 LAHHQDDQHETVLMRLLAGHGSRGLRGISPAANIPECYDMH 225 >gi|123439490|ref|XP_001310516.1| hypothetical protein [Trichomonas vaginalis G3] gi|121892289|gb|EAX97586.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 280 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 27/177 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF------GKIKFSAI--SVDHCLRETAKDEVRYV 73 IL+ +SGG DS+ L L + +++F IKFS + +D +Y+ Sbjct: 31 ILIGLSGGKDSLTLTHYLSEWMREKNFSFQVVAAHIKFSNLPYGID----------AKYL 80 Query: 74 SDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D CS ++ + +V +N +T + + R A + E A+ N + H Sbjct: 81 EDFCSSRKVEYHLVEDQIRDVYLENEHKETCIHCS--RFRRAKLMELARKFNCNKLTLGH 138 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD + T+ M + GM + N+ + RP DI+ F + Sbjct: 139 HLDDIVATLIMNMTQHGRFAGMAVKLDITVGEEKYNMTMIRPLAYTPEMDIKQFCAE 195 >gi|168241213|ref|ZP_02666145.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447955|ref|YP_002045696.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254790142|sp|B4TIS7|TTCA_SALHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|194406259|gb|ACF66478.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339158|gb|EDZ25922.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 311 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|15641443|ref|NP_231075.1| hypothetical protein VC1432 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590934|ref|ZP_01678255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153817918|ref|ZP_01970585.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823754|ref|ZP_01976421.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081604|ref|YP_002810155.1| hypothetical protein VCM66_1388 [Vibrio cholerae M66-2] gi|229504993|ref|ZP_04394503.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] gi|229511338|ref|ZP_04400817.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] gi|229518456|ref|ZP_04407900.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] gi|229607996|ref|YP_002878644.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] gi|254848552|ref|ZP_05237902.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745811|ref|ZP_05419759.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] gi|262158910|ref|ZP_06030022.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] gi|298498489|ref|ZP_07008296.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|81544966|sp|Q9KS29|TTCA_VIBCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790148|sp|C3LMC8|TTCA_VIBCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|9655931|gb|AAF94589.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547209|gb|EAX57334.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126511545|gb|EAZ74139.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518723|gb|EAZ75946.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009492|gb|ACP05704.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345171|gb|EEO10145.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] gi|229351303|gb|EEO16244.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] gi|229357216|gb|EEO22133.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] gi|229370651|gb|ACQ61074.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] gi|254844257|gb|EET22671.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736886|gb|EET92283.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] gi|262029095|gb|EEY47747.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] gi|297542822|gb|EFH78872.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 310 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +++V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIVEEDTYAIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|152996252|ref|YP_001341087.1| PP-loop domain-containing protein [Marinomonas sp. MWYL1] gi|205830602|sp|A6VXH3|TTCA_MARMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150837176|gb|ABR71152.1| PP-loop domain protein [Marinomonas sp. MWYL1] Length = 279 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 24/230 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L ++ ++ I FS ++V+ ++ E Y+ ++ Sbjct: 41 VMVCLSGGKDSYTMLEILRNL---QASAPINFSIVAVNLDQKQPGFPEHILPAYLEELGV 97 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +S+V + +T +R R +L A+ I AT I H DD LET Sbjct: 98 DFHILERDTYSIVKEIVPEGKTTCGLCSRLRRGSLYG-FAEEIGATKIALGHHRDDILET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPS 193 +++ G L M +L D I RP C+ EDI +F + + P Sbjct: 157 LFLNMFF-----GGKLKSMPPKLLSDDGKHIVIRPLAYCKEEDIEAFSVMKEYPII--PC 209 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 N E ++ R+ V+D+ L K+F + +A+ ++P +L Sbjct: 210 NLCGSQENLQ-RQVVKDM----LQKWEKEFPGRTESMFSAIQNVVPSHLA 254 >gi|121730376|ref|ZP_01682729.1| conserved hypothetical protein [Vibrio cholerae V52] gi|121627872|gb|EAX60459.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 309 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L S+ + I F ++V+ ++ E Y+ + Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +++V K + +T +R R ++ AK + AT I H DD LET Sbjct: 100 EYKIVEEDTYAIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ KGM + D + + RP CR +DI Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|56413420|ref|YP_150495.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168235782|ref|ZP_02660840.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735405|ref|YP_002114682.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197362343|ref|YP_002141980.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927784|ref|ZP_03218985.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911960|ref|ZP_04655797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81360568|sp|Q5PHS1|TTCA_SALPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790145|sp|B5BJ71|TTCA_SALPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790146|sp|B4TWA6|TTCA_SALSV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56127677|gb|AAV77183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194710907|gb|ACF90128.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093820|emb|CAR59303.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197291136|gb|EDY30489.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323126|gb|EDZ08322.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614907|gb|EFY11832.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619347|gb|EFY16227.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623159|gb|EFY20001.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628448|gb|EFY25236.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634856|gb|EFY31587.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638579|gb|EFY35274.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640886|gb|EFY37534.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645385|gb|EFY41913.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651730|gb|EFY48102.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654370|gb|EFY50692.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661211|gb|EFY57437.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662661|gb|EFY58868.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667728|gb|EFY63888.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671860|gb|EFY67981.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677095|gb|EFY73159.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680243|gb|EFY76282.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685328|gb|EFY81324.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194309|gb|EFZ79505.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199387|gb|EFZ84481.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204135|gb|EFZ89148.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205859|gb|EFZ90822.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217186|gb|EGA01907.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220065|gb|EGA04533.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227264|gb|EGA11434.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232048|gb|EGA16155.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234575|gb|EGA18662.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238028|gb|EGA22087.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243371|gb|EGA27390.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246178|gb|EGA30163.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253679|gb|EGA37506.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259112|gb|EGA42758.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260420|gb|EGA44033.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266492|gb|EGA49979.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271216|gb|EGA54643.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 311 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|294668241|ref|ZP_06733348.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309949|gb|EFE51192.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 137 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L + HI A+SGG DS+ +L+ L S L+ R IK +A+ V H L++ A + + Sbjct: 15 GLSHARHIEAALSGGLDSV-VLLHLLSRLAGRL--NIKLTAVHVHHGLQDEADGWLEFCR 71 Query: 75 DVCSRLRI 82 D C+RL + Sbjct: 72 DYCARLAV 79 >gi|168230078|ref|ZP_02655136.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471984|ref|ZP_03077968.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458348|gb|EDX47187.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335366|gb|EDZ22130.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 311 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVQENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|161613875|ref|YP_001587840.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205830623|sp|A9MXN4|TTCA_SALPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|161363239|gb|ABX67007.1| hypothetical protein SPAB_01611 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 311 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|326392440|ref|ZP_08213837.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991517|gb|EGD50112.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 87 Score = 39.3 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I++ VSGG DS+ +L L+++ + +K + V+H +R E AK + ++V D+C +L Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77 Query: 81 RI 82 ++ Sbjct: 78 KL 79 >gi|262171527|ref|ZP_06039205.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451] gi|261892603|gb|EEY38589.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451] Length = 310 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 29/170 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I F ++V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLDILMSL---KKSAPISFELVAVNLDQKQPGFPAHVLPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 DD LET+++ KGM + D + + RP CR +DI Sbjct: 152 RDDILETLFLNMFYGGKIKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|323213900|gb|EFZ98671.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 310 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|167992837|ref|ZP_02573933.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329037|gb|EDZ15801.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993586|gb|ACY88471.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|332988541|gb|AEF07524.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 311 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|27365903|ref|NP_761431.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio vulnificus CMCP6] gi|81448038|sp|Q8D9J0|TTCA_VIBVU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|27362052|gb|AAO10958.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus CMCP6] Length = 310 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 29/170 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L S+ + I FS ++V+ H L E Sbjct: 43 IMVCLSGGKDSFTMLDILISL---QKSAPISFSLVAVNLDQKQPGFPAHVLPE------- 92 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ AK + AT I H Sbjct: 93 YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 DD LET+++ KGM + D + + RP CR +DI Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197 >gi|16764998|ref|NP_460613.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549859|ref|ZP_02343617.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168260142|ref|ZP_02682115.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197248499|ref|YP_002146377.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264456|ref|ZP_03164530.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522812|sp|Q8ZP88|TTCA_SALTY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790138|sp|B5F5C0|TTCA_SALA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|16420181|gb|AAL20572.1| putative ATPase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197212202|gb|ACH49599.1| YdaO [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242711|gb|EDY25331.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324962|gb|EDZ12801.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205350986|gb|EDZ37617.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246846|emb|CBG24662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158182|emb|CBW17680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912645|dbj|BAJ36619.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224280|gb|EFX49343.1| tRNACytosine32-2-thiocytidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129923|gb|ADX17353.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 311 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|193217036|ref|YP_002000278.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma arthritidis 158L3-1] gi|193002359|gb|ACF07574.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma arthritidis 158L3-1] Length = 307 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%) Query: 23 LVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+AVSGG DSM LL H+V+ V++ RE + + V C Sbjct: 20 LIAVSGGPDSMFLLNLFKEHNVV-----------VAHVNYNKREDSNIDETIVRSYCKSH 68 Query: 81 RIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + + S K G AR+ RY + ++ AH DD LET M+ Sbjct: 69 SIPYEIYSIKKGTNIKGNFQDWARKERYHFFKQIYDKYQCDYLLLAHHKDDFLETAIMQK 128 Query: 140 Q 140 + Sbjct: 129 E 129 >gi|293606581|ref|ZP_06688938.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553] gi|292815057|gb|EFF74181.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553] Length = 231 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 23/103 (22%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--------DTILYDLNLWISRPF 169 A+L++ AH DDQ ETV +R R G G+ GM D I Y RP+ Sbjct: 16 GASLVLLAHHRDDQAETVLLRLLR-----GAGVLGMAAMSEVSQRDGITY------LRPW 64 Query: 170 LRCRREDI--RSFLLQRNISW--CEDPSNTDDRFERVRVRRFV 208 L R I + +++ W +DP+N D R+ R VR + Sbjct: 65 LGQDRATILEAADAVRQASGWQAVQDPTNADPRYTRAAVRELL 107 >gi|256826250|ref|YP_003150210.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547] gi|256689643|gb|ACV07445.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547] Length = 356 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 76/198 (38%), Gaps = 19/198 (9%) Query: 22 ILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A SGG+DS+ ++ +A + R +A VDH L+ ++ C Sbjct: 31 VLLACSGGADSVAMVAAVAFEADRLRRGGASPVVAAGVVDHGLQAGSEQVAAGAVARCRA 90 Query: 80 LRIAHSVVSWKNSKPQTG--------LMAAAREARYALISEHAKTIN-ATLIMTAHTFDD 130 L I V S + +TG A R+A T T AHT DD Sbjct: 91 LGI-EQVWSERVEVTRTGEGPEAEARRARHAALERWATALAGGPTGGVGTETWLAHTRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q E V + R + L+GM DL RPFL R + Sbjct: 150 QAEQVLLGLLRGAGTRS--LAGMAPG-RGDL----VRPFLAVSAATTRRACRDLGLPVHH 202 Query: 191 DPSNTDDRFERVRVRRFV 208 DP N D RF RVR RR + Sbjct: 203 DPHNDDPRFTRVRARRVL 220 >gi|254168734|ref|ZP_04875576.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|289596819|ref|YP_003483515.1| PP-loop domain protein [Aciduliprofundum boonei T469] gi|197622360|gb|EDY34933.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|289534606|gb|ADD08953.1| PP-loop domain protein [Aciduliprofundum boonei T469] Length = 308 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 27/138 (19%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+AVSGG DSM + +H + FGK ++ A++VD + + ++ + + Sbjct: 50 ILIAVSGGKDSMLTMYQMHKI-----FGKWRDLELVAVTVDEGIGDFRRNCAKVANIYAR 104 Query: 79 RLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTINATLIM 123 L I H V+++K KP T R+ +++ +AK I A ++ Sbjct: 105 ELGIEHEVITFKEYLGITTDDVARVDKELKPCTYCGVFRRK----VLNMYAKEIGANYLI 160 Query: 124 TAHTFDDQLETVYMRSQR 141 DD +++ M R Sbjct: 161 LGLNLDDIAQSIIMNITR 178 >gi|62180219|ref|YP_216636.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583854|ref|YP_002637652.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75483213|sp|Q57P06|TTCA_SALCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790144|sp|C0Q3V6|TTCA_SALPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|62127852|gb|AAX65555.1| putative ATPase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468381|gb|ACN46211.1| hypothetical protein SPC_2080 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714691|gb|EFZ06262.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 311 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 I+V +SGG DS +L L ++ + I FS ++V+ ++ E Y+ + Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEPLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199 >gi|294636268|ref|ZP_06714674.1| PP-loop family protein [Edwardsiella tarda ATCC 23685] gi|291090443|gb|EFE23004.1| PP-loop family protein [Edwardsiella tarda ATCC 23685] Length = 311 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78 ++V +SGG DS +L L ++ + + F+ ++V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLEILRNL---QQSAPVDFTLVAVNLDQKQPGFPETVLPAYLDAQGI 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI + +V K + +T +R R ++ A +N I H DD LET Sbjct: 99 EYRIVEEDTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELNCNKIALGHHRDDMLET 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199 >gi|167586804|ref|ZP_02379192.1| tRNA(Ile)-lysidine synthetase [Burkholderia ubonensis Bu] Length = 370 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 43/223 (19%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A I +A SGG DS LL A + R G + A+ V H L A + + ++ Sbjct: 28 ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCIALHVHHGLSANADAWAAHAAASAAK 82 Query: 80 LRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L +A V +NS G+ A+ARE+RYA + + A ++ A DDQ ETV Sbjct: 83 LGVAFDSMRVDVPRNSG--AGIEASARESRYAALDAMCERHGAAVLWLAQHADDQAETVL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS--------------FLL 182 ++ R G+ P R + + Sbjct: 141 LQLLRGAGIAGIA---------------AMAPRYRPAAARVERVRPLLRLLRAQLERYAA 185 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 QR ++W +D SN D RF R +R V L AL + F+D Sbjct: 186 QRELAWIDDESNQDTRFARNALRVDV----LPALAVHFPGFRD 224 >gi|18309972|ref|NP_561906.1| hypothetical protein CPE0990 [Clostridium perfringens str. 13] gi|110801239|ref|YP_695693.1| ExsB family protein [Clostridium perfringens ATCC 13124] gi|110801904|ref|YP_698381.1| PP-loop family protein [Clostridium perfringens SM101] gi|168208060|ref|ZP_02634065.1| ExsB family protein [Clostridium perfringens E str. JGS1987] gi|168211804|ref|ZP_02637429.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626] gi|169341156|ref|ZP_02863249.1| ExsB family protein [Clostridium perfringens C str. JGS1495] gi|18144650|dbj|BAB80696.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675886|gb|ABG84873.1| ExsB family protein [Clostridium perfringens ATCC 13124] gi|110682405|gb|ABG85775.1| PP-loop family protein [Clostridium perfringens SM101] gi|169299763|gb|EDS81815.1| ExsB family protein [Clostridium perfringens C str. JGS1495] gi|170660645|gb|EDT13328.1| ExsB family protein [Clostridium perfringens E str. JGS1987] gi|170710238|gb|EDT22420.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626] Length = 244 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 22/200 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72 I V +SGG DS+ LL H + + + F KF I++ + L E K+ +V + Sbjct: 27 IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + I V K K L A R R AL +++A+ + + H DD L Sbjct: 84 YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + +G + ++ NL + RP + IR + + N ++P Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAVAEYNFPVIKNP 193 Query: 193 SNTDDRFERVRVRRFVRDID 212 D + +R ++ +R +D Sbjct: 194 CPADGKTKREDMKNLIRSLD 213 >gi|301106300|ref|XP_002902233.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans T30-4] gi|262098853|gb|EEY56905.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans T30-4] Length = 665 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 11/179 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +H+ V++SGG DSM + +H + G A+ +D+ R + E YV C R Sbjct: 225 SHMAVSLSGGVDSMVVAYLMHKL--KEKHGDFTIVAVHLDYGNRPESGAECDYVRRWCER 282 Query: 80 LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V K T +RE RY+ +E + + + H D E V Sbjct: 283 FGIVFHVRRIDEVKRATTRRDDYEKISREIRYSTYAEVMQKYHIPGMCFGHHRGDVQENV 342 Query: 136 YMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + + + L+GM +++ + +W RP L ++ I F + + + +D + Sbjct: 343 ISNMMKGLSL--LNLNGMQASSVVNGVRIW--RPLLDLEKDVIFEFAHRYGVPYFKDTT 397 >gi|218779090|ref|YP_002430408.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760474|gb|ACL02940.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01] Length = 252 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80 + V +SGG DS L+ L LS R K I +D +++ DE+ +Y + RL Sbjct: 40 VAVGISGGKDSFTLMWILRERLS-RIPVKYHLEGIHIDPGFDDSSADEIAQYCESMNYRL 98 Query: 81 RIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R+ + + + + + +R R L E A+ + T I H DD +ET++M Sbjct: 99 RVEKTDFGIRAHSDENRENPCFLCSRLRRQRLF-ELAQEMGCTKIALGHHKDDLIETLFM 157 >gi|238782626|ref|ZP_04626657.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri ATCC 43970] gi|238716553|gb|EEQ08534.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri ATCC 43970] Length = 313 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 29/256 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L S+ + I F+ I+V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F + R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH-MRSII 250 + +R ++ +RD D K++ + +A+ ++P +L H + Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDHKLFDFK 263 Query: 251 AISQDILNIDSTLLFY 266 AI+ D +D L + Sbjct: 264 AITHDSEVVDGGDLAF 279 >gi|322832780|ref|YP_004212807.1| PP-loop domain protein [Rahnella sp. Y9602] gi|321167981|gb|ADW73680.1| PP-loop domain protein [Rahnella sp. Y9602] Length = 311 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 29/177 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + + FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPAHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I +S+V K + +T +R R ++ A + T I H Sbjct: 92 YLDALGVEYKIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGCTKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DD L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 151 RDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAIAR 203 >gi|292488333|ref|YP_003531215.1| hypothetical protein EAMY_1857 [Erwinia amylovora CFBP1430] gi|292899532|ref|YP_003538901.1| hypothetical protein EAM_1822 [Erwinia amylovora ATCC 49946] gi|291199380|emb|CBJ46497.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291553762|emb|CBA20807.1| UPF0021 protein HI1371.1 [Erwinia amylovora CFBP1430] gi|312172472|emb|CBX80729.1| UPF0021 protein HI1371.1 [Erwinia amylovora ATCC BAA-2158] Length = 309 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + + FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + + +I +S+V K + +T +R R ++ A + + I H Sbjct: 92 YLEKLGVQYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD L+T+++ KGM M D D + RP CR +DI+ F R Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAFARQ 204 >gi|218884033|ref|YP_002428415.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] gi|218765649|gb|ACL11048.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 53/236 (22%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLL---------------IALHSVLSDRSFG 49 +E++R + ++ P +++AVSGG DSM LL I LH L F Sbjct: 36 VETIRKY--RMIKPGDSVVIAVSGGKDSMSLLTVLVKQARELGIREVIGLHLNLGIGGFS 93 Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109 ++ S + ++C R K V + D+ L ++ S ++ K +P + + RY + Sbjct: 94 ELVESVVR-EYCERLGVKCHVIRLRDL---LGLSISELASKARRPPCSVCGLVK--RY-I 146 Query: 110 ISEHAKTINATLIMTAHTFDD----QLETVYMRSQRDYA-------EKGMGLSGMCDTIL 158 + T+NA++++T H DD L+ +Y+ R A E+G+ + Sbjct: 147 FTVSTMTVNASVLVTGHHLDDVVKYALKNIYVGDYRSLASLKPVSVEEGLPVK------- 199 Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCED--PSNTDDRFERVRVRRFVRDID 212 +RP + DI ++ I + E P + E+ VR F+ +++ Sbjct: 200 -------ARPLISVGERDIETYAKLSGIPYVEAKCPFKHEGDAEKA-VRVFISELE 247 >gi|134302168|ref|YP_001122137.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418] gi|205830357|sp|A4IYL5|TTCA2_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|134049945|gb|ABO47016.1| putative ATPase, PP-loop family [Francisella tularensis subsp. tularensis WY96-3418] Length = 251 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V+ K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVIIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHHDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDL 213 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219 >gi|218132480|ref|ZP_03461284.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC 43243] gi|217992590|gb|EEC58592.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC 43243] Length = 247 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL ALH + R F + A++V+ + + +S +C Sbjct: 26 IAVGISGGKDSLTLLYALHGL---RRFYPNNFEIEAVTVNAGIEGM---DFSPISRLCDE 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + ++V+ N + ++ A + R ++ A + I AH DD +E Sbjct: 80 LDVNYTVIDTDIYDIVYNIRRESNPCALCAKLRKGAFNKKAAELGCNKIAYAHHKDDVIE 139 Query: 134 TVYM 137 T M Sbjct: 140 TFMM 143 >gi|126460252|ref|YP_001056530.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249973|gb|ABO09064.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548] Length = 327 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 25/144 (17%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69 L+ P ++ VAVSGG DS+ LL L + + ++ A +++ C ++ + Sbjct: 46 LIVPGDYVAVAVSGGKDSLVLLYILGKLRERGALRGVRLEAFTINEGHPYSCFYRMSRRD 105 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121 YV ++ + + ++V +K+ T + + R A+ A H TI+ L Sbjct: 106 --YVRELAEKFGVEYNVYHFKDIFGVTAMELSERLAK-AGHEVHMCTIDGVLRRRAMNII 162 Query: 122 --------IMTAHTFDDQLETVYM 137 I TAH DD+ +TV + Sbjct: 163 GKRRGWTKIATAHNLDDEAQTVML 186 >gi|118497755|ref|YP_898805.1| ATPase [Francisella tularensis subsp. novicida U112] gi|194323727|ref|ZP_03057503.1| hypothetical protein FTE_0562 [Francisella tularensis subsp. novicida FTE] gi|208779820|ref|ZP_03247164.1| hypothetical protein FTG_0565 [Francisella novicida FTG] gi|254374565|ref|ZP_04990046.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|205830356|sp|A0Q736|TTCA2_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|118423661|gb|ABK90051.1| predicted ATPase of the PP-loop superfamily [Francisella novicida U112] gi|151572284|gb|EDN37938.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|194322091|gb|EDX19573.1| hypothetical protein FTE_0562 [Francisella tularensis subsp. novicida FTE] gi|208744275|gb|EDZ90575.1| hypothetical protein FTG_0565 [Francisella novicida FTG] Length = 253 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 53/252 (21%), Positives = 110/252 (43%), Gaps = 37/252 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN--NAVAMLIPKYLTVHMRSIIA 251 + + +R +V++ ++D+ L ++ +V N N+++ ++P +L Sbjct: 200 GSQENLKRKKVKKLIQDLAL----------ENPKVPSNILNSLSNVLPSHL--------- 240 Query: 252 ISQDILNIDSTL 263 + +++ +ID+T+ Sbjct: 241 MDRNLFDIDATI 252 >gi|237731651|ref|ZP_04562132.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp. 30_2] gi|226907190|gb|EEH93108.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp. 30_2] Length = 311 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 29/173 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + I FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPGHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + +I + +V K + +T +R R ++ A + AT I H Sbjct: 92 YLEQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 DD L+T+++ KGM M D D + RP CR +DI F Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199 >gi|52425142|ref|YP_088279.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] gi|81387134|sp|Q65TL6|TTCA_MANSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|52307194|gb|AAU37694.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] Length = 312 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 15/170 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS LL L L+ R + F ++V+ ++ E Y+S + Sbjct: 43 VMVCLSGGKDSYTLLDIL---LNLRHNAPVHFDIVAVNLDQKQPGFPEHILPEYLSSIGV 99 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD LET Sbjct: 100 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDMLET 158 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +++ K M + D D + RP C+ +DI + + + Sbjct: 159 LFLNMFYGGKLKSMPPKLVSD----DGKQIVIRPLAYCKEKDIEKYAVAK 204 >gi|238749377|ref|ZP_04610882.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC 43380] gi|238712032|gb|EEQ04245.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC 43380] Length = 313 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L S+ + I F+ I+V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTASELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F + R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257 >gi|51596578|ref|YP_070769.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 32953] gi|186895636|ref|YP_001872748.1| C32 tRNA thiolase [Yersinia pseudotuberculosis PB1/+] gi|81639280|sp|Q66A78|TTCA_YERPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830673|sp|B2K5E0|TTCA_YERPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|51589860|emb|CAH21492.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|186698662|gb|ACC89291.1| PP-loop domain protein [Yersinia pseudotuberculosis PB1/+] Length = 313 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L S+ + I FS I+V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLDILQSL---QKSAPINFSLIAVNLDQKQPGFPEDILPAYLDKQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEIIPDGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-----ISWC 189 +++ KGM M D D + RP CR +DI F + R + C Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPIIPCNLC 213 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 214 GSQPN----LQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257 >gi|332184252|gb|AEE26506.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida 3523] Length = 253 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 16/201 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S I D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQEGDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDLH 214 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLALE 220 >gi|310767700|gb|ADP12650.1| C32 tRNA thiolase [Erwinia sp. Ejp617] Length = 310 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 29/177 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71 I+V +SGG DS +L L ++ + + FS ++V+ H L E Sbjct: 42 IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + I +S+V K + +T +R R ++ A + + I H Sbjct: 92 YLEQLGVEYNIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DD L+T+++ KGM M D D + RP CR +DI+ F + R Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAIAR 203 >gi|315094257|gb|EFT66233.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL060PA1] Length = 311 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 19/205 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L AL S + R + + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++ + + D+ +R + V V + P AA R AL+ Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDE 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198 >gi|314965441|gb|EFT09540.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA2] gi|315104911|gb|EFT76887.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA2] gi|327329235|gb|EGE70995.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL103PA1] Length = 311 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 19/205 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L AL S + R + + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++ + + D+ +R + V V + P AA R AL+ Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDE 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198 >gi|314922405|gb|EFS86236.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL001PA1] Length = 311 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V SGG DS+ L AL S + R + + VDH L++ + + D+ +R + Sbjct: 28 VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 84 Query: 83 AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V V + P AA R AL+ ++ HT DDQ E V + Sbjct: 85 DACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G G + + W P L RR + + +DP N D RF Sbjct: 141 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 193 Query: 201 RVRVR 205 R RVR Sbjct: 194 RSRVR 198 >gi|254373114|ref|ZP_04988603.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570841|gb|EDN36495.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 251 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGKNTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDL 213 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219 >gi|293400608|ref|ZP_06644753.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305634|gb|EFE46878.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 315 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DSM LL ALH F +F + + H E + V+ C L Sbjct: 26 IGVGVSGGKDSMVLLTALHMYA---KFCDRRFEVVGI-HIKLGFPNMEFQEVTQFCEHLG 81 Query: 82 IA-HSVVS-----WKNSKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133 I H + S K + + G + + +++ A +++ AK ++ + H DD +E Sbjct: 82 IEFHQIDSKVYEILKRNLDKNGRIRCSLCSKFKKATVNQAAKDLHCNKVAFGHHSDDAIE 141 Query: 134 TVYMRS 139 T+ M + Sbjct: 142 TLLMNA 147 >gi|167037749|ref|YP_001665327.1| PP-loop domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116163|ref|YP_004186322.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856583|gb|ABY94991.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929254|gb|ADV79939.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 235 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78 I V VSGG DS+ LL LH + ++F KF + + L D V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTLGYDNFDPTP-VENFCQEKG 79 Query: 79 ------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R R AL + AK + AH +DD + Sbjct: 80 IPFFIKETDIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + +R +R + D+ Sbjct: 188 VVKNPCPVEGHTKRHYIRNLLIDL 211 >gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255] Length = 687 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P +AVSGG+DSM L + S G I +A VDH R + E + V Sbjct: 44 TLQLPQRFGIAVSGGADSMALAYLCKQLERSSDVAGAISVTAFVVDHRARPESTIEAQKV 103 Query: 74 SDVCSRLRIAHSVVS--WKNSKP-QTGLMAA---------------AREARYALISEHAK 115 + + I ++S W ++ P QT L + AR R+ + Sbjct: 104 AGWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALGIACH 163 Query: 116 TINATLIMTAHTFDDQLETVYMR 138 ++ H DD +ET R Sbjct: 164 EFKLETLLLGHHQDDNIETTIWR 186 >gi|238796410|ref|ZP_04639919.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii ATCC 43969] gi|238719855|gb|EEQ11662.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii ATCC 43969] Length = 318 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L S+ + I F+ I+V+ ++ E Y+ Sbjct: 47 VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 103 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V + +T +R R ++ A + AT I H DD L+T Sbjct: 104 EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 162 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F + R P N Sbjct: 163 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 216 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +R ++ +RD D K++ + +A+ ++P +L H Sbjct: 217 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 262 >gi|37519970|ref|NP_923347.1| hypothetical protein gvip035 [Gloeobacter violaceus PCC 7421] gi|35210962|dbj|BAC88342.1| ycf62 [Gloeobacter violaceus PCC 7421] Length = 278 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 AAAR RY + + A+ + ++T HT D+ ETV R G+G + Sbjct: 55 AAARAWRYCWLEQIARGLALERVVTGHTLSDRAETVLFNLLRGSGGAGLGSLDWERPLGG 114 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + L RP L R + ++ L ++ C D SN + F R R+R Sbjct: 115 GVRL--VRPLLGITRAETGAYCLAHHLPICIDESNANLTFRRNRIR 158 >gi|242239175|ref|YP_002987356.1| C32 tRNA thiolase [Dickeya dadantii Ech703] gi|242131232|gb|ACS85534.1| PP-loop domain protein [Dickeya dadantii Ech703] Length = 313 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV--RYVSDVCS 78 ++V +SGG DS +L L ++ + I FS I+V+ ++ V Y+ + Sbjct: 42 VMVCLSGGKDSYTMLEILRNL---QQSAPISFSLIAVNLDQKQPGFPGHVLPNYLDSIGI 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I + +V K + +T +R R ++ A + AT I H DD L+T Sbjct: 99 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +++ KGM M D D + RP CR +DI F R P N Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211 Query: 195 ---TDDRFERVRVRRFVRDID 212 + +R ++ +RD D Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232 >gi|268679168|ref|YP_003303599.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617199|gb|ACZ11564.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 250 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 26/223 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DS+ L L + F +F A+++ + + E E+ + C Sbjct: 28 ILLGLSGGKDSLSLAHILKHMQRVAPF-DFEFKAVTITYGMGE----ELDTLHQHCVEHE 82 Query: 82 IAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I H +V K + + + R + +A T + AH DD +E+ Sbjct: 83 IDHEIVDTKIFDLAQDKIRENSSFCSFFSRMRRGALYTYALEYGYTKLALAHHLDDAVES 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M +++ G L M L + RP + R +R + N+ D + Sbjct: 143 FFM----NFSYNGT-LRSMPPIYTAQNGLHVIRPLIHARERQLRDCAKEHNMPTIGDEAC 197 Query: 195 TDDRFE------RVRVRRFVRDIDLH--ALYLKMKK-FQDLRV 228 RF+ R R + + ++ L++ +KK F+ L+V Sbjct: 198 PAMRFDVKMPVIRTRTKEMLAQMEQENPELFISLKKAFESLQV 240 >gi|242399147|ref|YP_002994571.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] gi|242265540|gb|ACS90222.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] Length = 331 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 20/137 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ LL LH + F I AI++D + + V +L Sbjct: 60 IAVGVSGGKDSVVLLHILHKLSQKFPFEII---AITIDEGIEGYRPESVEIAKRNAKKLG 116 Query: 82 IAHSVVSWK-----------------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 I H + S+K + + G + R LI+ A+ + A + Sbjct: 117 IEHKIYSFKEYIGFSLDETVSIMGSFEKRERVGACSYCGVWRRWLINYAAQDLEADKLAV 176 Query: 125 AHTFDDQLETVYMRSQR 141 H DD+++ M R Sbjct: 177 GHNLDDEVQMFLMNVMR 193 >gi|284166087|ref|YP_003404366.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511] gi|284015742|gb|ADB61693.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511] Length = 319 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L LH ++ +I+ +++ + V ++ Sbjct: 53 PQTWVIGLSGGKDSVVLTQILHDTFAEDP--RIELVGLTIHEGIEGYRDKSVDACVELAD 110 Query: 79 RLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATLIMT 124 L I H +VS++ P+ MAA R L+ ++A+ + A L++T Sbjct: 111 DLDIRHELVSYEEEFGVRMDDVVEDDPEN--MAACAYCGVFRRDLLEKYAEKLEADLLLT 168 Query: 125 AHTFDDQLETVYMR 138 H DD+ +T M Sbjct: 169 GHNLDDEAQTALMN 182 >gi|167044130|gb|ABZ08813.1| putative PP-loop family protein [uncultured marine crenarchaeote HF4000_APKG5C13] Length = 267 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA+SGG DS ++++ ++ K+ SAI+V + A++E+ Y + S + Sbjct: 18 ILVALSGGVDS--------ALVAYSAYTKLGKSAIAVTADYKTLAQEELEYAKKISSEIG 69 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARY--ALISEH----AKTINATLIMTAHTFDD 130 I H V+ + ++ + Y + +SEH AK +I+ DD Sbjct: 70 IKHIVIEYNELDNESFVKNDNNRCFYCRSELSEHLLQVAKEFETDMIVDGTNIDD 124 >gi|167040443|ref|YP_001663428.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514] gi|256752475|ref|ZP_05493333.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914494|ref|ZP_07131810.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307724270|ref|YP_003904021.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513] gi|166854683|gb|ABY93092.1| PP-loop domain protein [Thermoanaerobacter sp. X514] gi|256748677|gb|EEU61723.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889429|gb|EFK84575.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307581331|gb|ADN54730.1| PP-loop domain protein [Thermoanaerobacter sp. X513] Length = 235 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 30/204 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77 I V VSGG DS+ LL LH + ++F KF + + L D V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTLGYDNFDPTP-VENFCREKG 79 Query: 78 -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I V ++ + L A R ++ AK + AH +DD + Sbjct: 80 IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +T M + +G T L + + RP + + +DIRS + + N+ Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 ++P + +R +R + D+ Sbjct: 188 VVKNPCPVEGHTKRHYIRNLLIDL 211 >gi|312881636|ref|ZP_07741414.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370699|gb|EFP98173.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 297 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 25/171 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRE--TAKDE 69 ++ +SGG DS +L L L+ + IKF ++V +H L E + D Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPEHILPEYFESLDI 96 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 Y+ D + +SVV K + +T +R R L S A+ I AT + H D Sbjct: 97 PYYIVD-----KDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMD 150 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 D +ET+++ K M D D + RP CR +D+ ++ Sbjct: 151 DMVETLFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDLITY 197 >gi|147679000|ref|YP_001213215.1| ATPase [Pelotomaculum thermopropionicum SI] gi|146275097|dbj|BAF60846.1| predicted ATPase [Pelotomaculum thermopropionicum SI] Length = 250 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 21/196 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAKDEVRYVS 74 + V +SGG DS LL ALH ++S + + + A+ VD L E + +R VS Sbjct: 29 VAVGMSGGKDSTSLLHALH-LISRSAPVRFELEAVFVDLGWPADISLLEEFCR--LRNVS 85 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT--INATLIMTAHTFDDQL 132 + IA V + + L A R + H K + + H DD + Sbjct: 86 LHVVKTGIAEIVFEARKGENPCALCAHLRRGAF-----HGKALELGCNKVALGHHLDDAI 140 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET +M + + C T L L + RP + EDIR+++ + +P Sbjct: 141 ETFFMSL---FYTGQLRTFSPC-TFLDRTGLTMIRPLVYLPAEDIRTWVEMEGLPAITNP 196 Query: 193 SNTDDRFERVRVRRFV 208 + +R R V Sbjct: 197 CPASGKTKRQEARELV 212 >gi|293375997|ref|ZP_06622255.1| PP-loop family protein [Turicibacter sanguinis PC909] gi|325842257|ref|ZP_08167649.1| PP-loop family protein [Turicibacter sp. HGF1] gi|292645374|gb|EFF63426.1| PP-loop family protein [Turicibacter sanguinis PC909] gi|325489663|gb|EGC92023.1| PP-loop family protein [Turicibacter sp. HGF1] Length = 244 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 17/198 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG DSM LL ALH + F +KF + + L D V + C Sbjct: 24 VAVGVSGGKDSMALLYALHLY---QKFAPVKFELVGITLKLGFPGMD-FNPVVEFCKEHG 79 Query: 82 IAHSVVSWKN------SKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133 I + +V + + + G + + +++ A++ + + I AH DD +E Sbjct: 80 IEYHLVDTQVYEILQLNADENGKIPCSLCSKFKKAILIKKGVELGCNKISMAHHADDAVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ M + + G + L ++ RP + C +DI S R++ Sbjct: 140 TLVMNTMYN----GYMATFKPKMYLDRTDVTFIRPLVYCYEDDIIS-AANRHVPIVPSTC 194 Query: 194 NTDDRFERVRVRRFVRDI 211 D +R V++ ++ + Sbjct: 195 PMDKHTKREDVKQLLKKL 212 >gi|332296196|ref|YP_004438119.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796] gi|332179299|gb|AEE14988.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796] Length = 241 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCSRL 80 V +SGG DS+ L AL+ VL R K K A+ VD + D+++ ++ + Sbjct: 29 VGLSGGKDSLITLWALNEVLRHRK-EKYKLCAVLVDQGFPGFSYDKIKDYLILNGIPYIE 87 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 R ++ S S+ + + R R AL+ + AK + AT + H DD LE + M Sbjct: 88 RKSYIYSSLSKSESPCAICSHLR--RGALV-DGAKIMGATHLALGHHLDDLLEGIVMT-- 142 Query: 141 RDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNISW-----CE 190 + ++G + + L ++++ RP L E IR +L + I E Sbjct: 143 -------IAMNGRPNVLVPIKYLSRRDIYLIRPLLLVEEEHIR--ILSKKIQGINPVESE 193 Query: 191 DPSNTDDRFERVRVRRFV 208 P + D ER++++ ++ Sbjct: 194 CPYSKDS--ERIKIKNWL 209 >gi|260437103|ref|ZP_05790919.1| ExsB family protein [Butyrivibrio crossotus DSM 2876] gi|292810415|gb|EFF69620.1| ExsB family protein [Butyrivibrio crossotus DSM 2876] Length = 242 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ LL AL + R F K+ +++ L D V ++C +L Sbjct: 26 IAIGISGGKDSLTLLYALAGL---RRFYPKKYELVAITVKLGLENMD-FTPVKELCDKLE 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + V + ++ ++ + + R +E A + AH DD +ET Sbjct: 82 VPYYTVDTEIYQIIFEARKESNPCSLCAKMRKGAFNEKALELGCNKFAYAHHRDDLIETF 141 Query: 136 YM 137 YM Sbjct: 142 YM 143 >gi|307546134|ref|YP_003898613.1| C32 tRNA thiolase [Halomonas elongata DSM 2581] gi|307218158|emb|CBV43428.1| C32 tRNA thiolase [Halomonas elongata DSM 2581] Length = 298 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L ++ + + FS ++V+ ++ E Y+ + Sbjct: 58 VMVCLSGGKDSYTMLEILRNLQRN---APVDFSLVAVNLDQKQPGFPEHVLPEYLEGIGV 114 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +SVV K + +T +R R +L +A+ I AT I H +D LET Sbjct: 115 DYHILERDTYSVVKEKTPEGKTTCSLCSRLRRGSLYG-YAEEIGATKIALGHHREDILET 173 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180 +++ G L M +L D N+ I RP CR DI F Sbjct: 174 LFLN-----MFFGGSLKSMPPKLLSDDGKNIVI-RPLAYCREADIAEF 215 >gi|282853313|ref|ZP_06262650.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139] gi|282582766|gb|EFB88146.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139] Length = 317 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V SGG DS+ L AL S + R + + VDH L++ + + D+ +R + Sbjct: 34 VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 90 Query: 83 AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V V P AA R AL+ ++ HT DDQ E V + Sbjct: 91 DACVRRVDVDAHDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 146 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G G + + W P L RR + + +DP N D RF Sbjct: 147 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 199 Query: 201 RVRVR 205 R RVR Sbjct: 200 RSRVR 204 >gi|168213914|ref|ZP_02639539.1| ExsB family protein [Clostridium perfringens CPE str. F4969] gi|170714588|gb|EDT26770.1| ExsB family protein [Clostridium perfringens CPE str. F4969] Length = 244 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 22/200 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72 I V +SGG DS+ LL H + + + F KF I++ + L E K+ +V + Sbjct: 27 IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + I V K K L A R R AL +++A+ + + H DD L Sbjct: 84 YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + +G + ++ NL + RP + IR + N ++P Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAATEYNFPVIKNP 193 Query: 193 SNTDDRFERVRVRRFVRDID 212 D + +R ++ +R +D Sbjct: 194 CPADGKTKREDMKNLIRSLD 213 >gi|163814067|ref|ZP_02205459.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759] gi|158450516|gb|EDP27511.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 18/214 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I + +SGG DS+ LL A+ + + F I F AI+VD E+R + C Sbjct: 26 IAIGISGGKDSLTLLYAMAKL---KKFYPIPFELEAITVDLGFEGFDTSELR---EYCES 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + +SV + + + ++ + R ++ A ++ I AH DD ++ Sbjct: 80 LDVRYSVCKTQIGEIIFDYRKESNPCSLCSRMRKGAFNDCAVSLGCNKIAYAHHKDDVID 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + M Y + S + T L + + RP + +IR+F + C++P Sbjct: 140 SFLMSML--YEGRIHTFSPV--THLEKTGVTLIRPLIYVLEGEIRAFARANALPVCKNPC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D +R + + ++ + +K + F + Sbjct: 196 PADGVTKRQESKDIIDELKVRVPDVKDRIFSSIE 229 >gi|167626278|ref|YP_001676778.1| hypothetical protein Fphi_0057 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205830350|sp|B0TY35|TTCA1_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|167596279|gb|ABZ86277.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 256 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 16/198 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ ++ Sbjct: 33 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDNLGVSY 91 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD +E++ Sbjct: 92 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIESLL 150 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S I D + RP + + D+ F + N P N Sbjct: 151 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 204 Query: 195 -TDDRFERVRVRRFVRDI 211 + + +R +V++ ++D+ Sbjct: 205 GSQENLKRKKVKKLIQDL 222 >gi|16082141|ref|NP_394578.1| hypothetical protein Ta1119 [Thermoplasma acidophilum DSM 1728] gi|10640432|emb|CAC12246.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 314 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS L LH +LS R ++ +A +VD + + + L Sbjct: 51 ISVAISGGKDSSVTLYLLHKILSKRR--NVELTAFTVDEGISGYRPAGLESAIKLTKMLG 108 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130 + HS++ +++S T +A R LI+E A+ NA + DD Sbjct: 109 VDHSIIRFQDSFGMTLDSIVGADASRIPCSYCGPLRRKLINEMAERQNADYVALGLNLDD 168 Query: 131 QLETVYMR-SQRDY 143 +++ M ++ DY Sbjct: 169 YSQSILMNVAKGDY 182 >gi|325179672|emb|CCA14070.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1185 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + FF L H L+A GG+D +I+ S +++ K+ F+A+ VDH R +AK Sbjct: 1 MEFFPTELKKTPHPLIAALGGTDYQAKIISHISAINEDYVPKLHFTALPVDH--RFSAKK 58 Query: 69 EVR 71 E+R Sbjct: 59 ELR 61 >gi|269139128|ref|YP_003295829.1| C32 tRNA thiolase [Edwardsiella tarda EIB202] gi|267984789|gb|ACY84618.1| C32 tRNA thiolase [Edwardsiella tarda EIB202] gi|304559054|gb|ADM41718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Edwardsiella tarda FL6-60] Length = 311 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78 ++V +SGG DS +L L ++ + + F+ ++V+ ++ E Y+ Sbjct: 42 VMVCLSGGKDSYTMLEILRNL---QQSAPVNFTLVAVNLDQKQPGFPETVLPAYLETQGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RI + +V K + +T +R R ++ A + I H DD LET Sbjct: 99 EYRIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTANELRCNKIALGHHRDDMLET 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199 >gi|313897338|ref|ZP_07830881.1| PP-loop family protein [Clostridium sp. HGF2] gi|312957708|gb|EFR39333.1| PP-loop family protein [Clostridium sp. HGF2] Length = 317 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%) Query: 22 ILVAVSGGSDSMGLLIALH--SVLSDRSFG------KIKFSAISVDHCL---RETAKDEV 70 I V VSGG DSM LL ALH S +DR+F K+ F + + R+ Sbjct: 26 IAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKLGFPNMDFSEVVAFCRQQGITFY 85 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFD 129 +Y S V L+ +N + + + + + A + + AK +N T + H D Sbjct: 86 QYDSQVYEILK--------RNPDKEGNIKCSLCSKFKKATVIDAAKKLNCTKVAFGHHSD 137 Query: 130 DQLETVYMRS 139 D +ET+ M + Sbjct: 138 DAVETLLMNA 147 >gi|56750421|ref|YP_171122.1| hypothetical protein syc0412_c [Synechococcus elongatus PCC 6301] gi|56685380|dbj|BAD78602.1| hypothetical protein YCF62 [Synechococcus elongatus PCC 6301] Length = 283 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 AAAR RY ++ A I+A L++T HT D+ ET+ R +G+ S L Sbjct: 59 AAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTRGSHLQGLA-SLRWQRSLS 117 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 D L + RPFL R + + Q + ED +N D RF R R+R Sbjct: 118 D-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFARNRLR 162 >gi|160892659|ref|ZP_02073449.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50] gi|156865700|gb|EDO59131.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50] Length = 251 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ LL AL + R F KF I++ L D + + +C L Sbjct: 26 IAVGISGGKDSLTLLYALAEL---RRFYPKKFDLIAITVNLGFDNFDTAK-IEQLCKELD 81 Query: 82 IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + +V + N + + + + R +++ + I AH DD +ET Sbjct: 82 VPYYIVDTEIYDIVFNVRKEKNPCSLCAKMRKGALNQKLNDLGCNKIAYAHHKDDFIETF 141 Query: 136 YM 137 M Sbjct: 142 LM 143 >gi|314982853|gb|EFT26945.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA3] gi|315091171|gb|EFT63147.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA4] Length = 311 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V SGG DS+ L AL S + R + + VDH L++ + + D+ +R + Sbjct: 28 VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 84 Query: 83 AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V V P AA R AL+ ++ HT DDQ E V + Sbjct: 85 DACVRRVDVDAHDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G G + + W P L RR + + +DP N D RF Sbjct: 141 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 193 Query: 201 RVRVR 205 R RVR Sbjct: 194 RSRVR 198 >gi|291531576|emb|CBK97161.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium siraeum 70/3] Length = 241 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL L + R F + + +A+++D + V+ +C + Sbjct: 24 IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYEAVARLCEK 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + S+V + + + + + R + + AK + H DD +E Sbjct: 80 LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M + E +G T L ++ + RP + + S + + Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNGFEIIKSVC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R + + F+RD++ K++ F LR Sbjct: 196 PADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|119472171|ref|ZP_01614373.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7] gi|119445090|gb|EAW26384.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7] Length = 303 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V +SGG DS +L L + + IKF + V+ ++ E + + +L Sbjct: 40 IMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVNLDQKQPGFPE-HVLPEYLDKLD 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V T ++ + R ++ AK + AT I H DD +ET Sbjct: 96 VEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ K M M D + + RP C+ DI + Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKEADISKY 197 >gi|56708253|ref|YP_170149.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670724|ref|YP_667281.1| hypothetical protein FTF1187 [Francisella tularensis subsp. tularensis FSC198] gi|224457372|ref|ZP_03665845.1| hypothetical protein FtultM_06802 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370739|ref|ZP_04986744.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875073|ref|ZP_05247783.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597358|sp|Q5NFP3|TTCA2_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|123063441|sp|Q14H45|TTCA2_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|56604745|emb|CAG45820.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321057|emb|CAL09203.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568982|gb|EDN34636.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254841072|gb|EET19508.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159480|gb|ADA78871.1| hypothetical protein NE061598_06875 [Francisella tularensis subsp. tularensis NE061598] Length = 251 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + V+ K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVIIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDL 213 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219 >gi|320585793|gb|EFW98472.1| pp-loop family protein [Grosmannia clavigera kw1407] Length = 686 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 22/160 (13%) Query: 12 FVRSLVYPAHI-LVAVSGGSDSMGLLIALHSV--------LSDRSFGKIKFSAISVDHCL 62 FV S + AH +A+SGG DSM L + ++D G F+A+ VDH L Sbjct: 5 FVLSSSFVAHSSALAISGGVDSMALAFLCSQLRRVDPWFRIADAPVG--GFTALIVDHRL 62 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAK 115 R+ + E + V++ L H W + + + AAR RY + Sbjct: 63 RDGSAVEAQAVAEAVRNL--GHRTQVWALTNFGGSSSSSSSSIETAARHFRYRCLGVRMA 120 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKG--MGLSGM 153 ++ AH DDQ ETV +R Y G GL GM Sbjct: 121 QSRLVSLLLAHHADDQYETVLLRLLTGYGLHGGIRGLRGM 160 >gi|302872795|ref|YP_003841431.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575654|gb|ADL43445.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 235 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 18/198 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VS G DS+ +L L + R F KF AI+VD + + + C + Sbjct: 24 IAVGVSAGKDSLTMLYTLSFM---RRFYPKKFDVVAITVDMGFESM---DFLPIKEFCDK 77 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + + + + + R +++ AK++ + H DD +E Sbjct: 78 INVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ +G T L + + RP + + ++RS + + +P Sbjct: 138 TFFL----SLFFEGRIYCFSPKTYLDRTQITVIRPMIYVKEHELRSAAKKLELPVITNPC 193 Query: 194 NTDDRFERVRVRRFVRDI 211 + + R R++ FV+ + Sbjct: 194 PANGKTNRQRIKEFVKSL 211 >gi|168215907|ref|ZP_02641532.1| ExsB family protein [Clostridium perfringens NCTC 8239] gi|182381767|gb|EDT79246.1| ExsB family protein [Clostridium perfringens NCTC 8239] Length = 244 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 22/200 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72 I V +SGG DS+ LL H + + + F KF I++ + L E K+ +V + Sbjct: 27 IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + I V K K L A R R AL +++A+ + + H DD L Sbjct: 84 YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + +G + ++ NL + RP + IR + N ++P Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAAAEYNFPVIKNP 193 Query: 193 SNTDDRFERVRVRRFVRDID 212 D + +R ++ +R +D Sbjct: 194 CPADGKTKREDMKSLIRSLD 213 >gi|149911837|ref|ZP_01900439.1| hypothetical protein PE36_11367 [Moritella sp. PE36] gi|149805090|gb|EDM65114.1| hypothetical protein PE36_11367 [Moritella sp. PE36] Length = 309 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG+DS +L L L ++ I F I+V+ ++ E RY+ ++ Sbjct: 41 VMVCLSGGADSYTMLDIL---LQLKAAAPISFDIIAVNLDQKQPGFPEDILPRYLENLGI 97 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ A + AT + H DD +ET Sbjct: 98 EYKIVQKDTYSIVKDKIPEGKTTCSLCSR-LRRGILYNAAVELRATKLALGHHADDIVET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ K M + D D + RP CR DI+++ Sbjct: 157 LFLNMFHGAKMKTMPPKLISD----DKRNIVIRPLAYCREADIKAY 198 >gi|323447395|gb|EGB03318.1| hypothetical protein AURANDRAFT_68117 [Aureococcus anophagefferens] Length = 492 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%) Query: 54 SAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 S ++ DH R E + + +V+ + R + + +W +S + M R Sbjct: 118 SVLNFDHRQRGEISSCDTLFVAALARRFGLECTAHNWVHSSTHSSQMEFRAWRRTTSFKT 177 Query: 113 HAKTINATL------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 ++A + + AH DDQ+E+ +R R G L+ + + Sbjct: 178 AFNVVDALIPQRCGHVALAHHADDQMESFLLRLAR-----GSRLTNVFKGVASQAAPCFV 232 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 RP L + D+ ++L SW ED +NTD Sbjct: 233 RPLLFATKHDLVTYLDADGESWREDTTNTD 262 >gi|309775465|ref|ZP_07670467.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916761|gb|EFP62499.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 317 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 14/196 (7%) Query: 22 ILVAVSGGSDSMGLLIALH--SVLSDRSFG----KIKFSAISVDHCLRET-AKDEVRYVS 74 I V VSGG DSM LL ALH S +DR+F IK ++D E K++ Sbjct: 26 IAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKLGFPNMDFSKVEAFCKEQGITFH 85 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 S++ + ++ K + + + A + + AK ++ T + H DD +ET Sbjct: 86 QFDSKV---YEILKRNPDKEGRIKCSLCSKFKKATVIDAAKKLSCTKVAFGHHSDDAVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M + G + + + + RP + +I S L + NI + + Sbjct: 143 LLMNA----IHGGKLATFLPKMYMSRTDTTFIRPLVYSYESEILSALTRNNIPFVKSTCP 198 Query: 195 TDDRFERVRVRRFVRD 210 D ER ++ ++D Sbjct: 199 NDGYTERQAMKDMLQD 214 >gi|315126297|ref|YP_004068300.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913] gi|315014811|gb|ADT68149.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913] Length = 304 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V +SGG DS +L L + + IKF +V+ ++ E + + L Sbjct: 40 IMVCLSGGKDSYTMLDMLQHL---QRVAPIKFDLFAVNLDQKQPGFPE-HVLPEYLDNLN 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134 I + +V T ++ + R ++ AK + AT I H DD +ET Sbjct: 96 IEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ K M M D + + RP C+ DI + Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKEADISKY 197 >gi|222530555|ref|YP_002574437.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222457402|gb|ACM61664.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 235 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 18/198 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VS G DS+ +L L + R F KF AI+VD + + + C + Sbjct: 24 IAVGVSAGKDSLTMLYTLSFL---RKFYPKKFEVVAITVDMGFEGM---DFLPIKEFCDK 77 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + + + + + R +++ AK++ + H DD +E Sbjct: 78 IDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ +G T L + RP + + D+RS + + +P Sbjct: 138 TFFL----SLFFEGRIYCFSPKTYLDRTQITTIRPMIYLKEHDLRSAAKKLELPVITNPC 193 Query: 194 NTDDRFERVRVRRFVRDI 211 + + R R++ FV+++ Sbjct: 194 PANGKTNRQRMKEFVKNL 211 >gi|149191306|ref|ZP_01869560.1| putative ATPase [Vibrio shilonii AK1] gi|148834842|gb|EDL51825.1| putative ATPase [Vibrio shilonii AK1] Length = 297 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS +L L L+ + IKF ++V+ ++ E + D L Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPE-HILPDYFETLN 95 Query: 82 I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +SVV K + +T +R R L S A+ I AT I H DD +E Sbjct: 96 IPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYS-FAEKIGATKIALGHHLDDIVE 154 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++ K M D D + RP CR +D+ Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194 >gi|328908035|gb|EGG27794.1| cell cycle protein MesJ [Propionibacterium sp. P08] Length = 230 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 35 VLLGHTLDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEIRRAQTVQAC 87 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 88 REWEVEPWQDPHNGDPRFLRSRVR 111 >gi|325187233|emb|CCA21772.1| tRNA(Ile)lysidine synthase putative [Albugo laibachii Nc14] Length = 660 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 10 RFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAK 67 RF V ++ + + V++SGG DSM L LH V LS +G + AI +D+ R + Sbjct: 211 RFLVNKNALSDTPVAVSLSGGVDSMVLAYLLHKVRLSSHYYGIV---AIHIDYGNRPESA 267 Query: 68 DEVRYVSDVCSRLRI 82 E YV C RL I Sbjct: 268 AECSYVKYWCDRLDI 282 >gi|257053471|ref|YP_003131304.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940] gi|256692234|gb|ACV12571.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940] Length = 321 Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P L+ +SGG DS+ L L ++ +I+ A+S+ + + + + Sbjct: 55 PVTWLIGLSGGKDSVVLTQLLAETFAEDP--RIELVALSIHEGIEGYRDESLDAAEALTD 112 Query: 79 RLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATLIMT 124 L + H VS+ + P+ MAA R L+S +A +A L++T Sbjct: 113 DLDLRHETVSYAEAFGVRMDDVVEDDPEN--MAACAYCGVFRRDLLSRYADEYDADLLLT 170 Query: 125 AHTFDDQLETVYM 137 H DD+ ET M Sbjct: 171 GHNLDDEAETALM 183 >gi|146304686|ref|YP_001192002.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702936|gb|ABP96078.1| PP-loop domain protein [Metallosphaera sedula DSM 5348] Length = 315 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 15/129 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VDHCLRETAKDEVRYVSDVC 77 + +L+AVSGG DS+ L L V+ I F+ + + + K+ Y+ D+ Sbjct: 48 SRVLIAVSGGKDSLVLADTLSKVMDPSKL--IAFNIVEGIQGYNREDQVKELYHYLRDLG 105 Query: 78 SRL-------RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINATLIMTAH 126 L + +S+ +S GL AA R LI++ + + A L+ T H Sbjct: 106 IELISTSFKTSVGYSLDEMVSSSRARGLNIAACTFCGGFRRKLINQAGRDVKADLVATGH 165 Query: 127 TFDDQLETV 135 DD+ +T+ Sbjct: 166 NLDDEAQTI 174 >gi|289580657|ref|YP_003479123.1| PP-loop domain protein [Natrialba magadii ATCC 43099] gi|289530210|gb|ADD04561.1| PP-loop domain protein [Natrialba magadii ATCC 43099] Length = 319 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 24/137 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSD 75 P ++ +SGG DS+ L LH + +I+ +++ + R+ + D +SD Sbjct: 53 PQTWVIGLSGGKDSVVLTQILHETFAKDP--RIELVGLTIHEGIEGYRDKSLDACVELSD 110 Query: 76 VCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATL 121 L I H VVS+++ P+ MAA R ++S +A + A L Sbjct: 111 ---DLDIRHEVVSYEDEFGIQMDDVVEDDPEN--MAACAYCGVFRRDILSRYADDLGADL 165 Query: 122 IMTAHTFDDQLETVYMR 138 ++T H DD+ +T M Sbjct: 166 LLTGHNLDDEAQTALMN 182 >gi|237749968|ref|ZP_04580448.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374379|gb|EEO24770.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 295 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 31/237 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DSM LL + + + + K +F A+++D+ E Y+ + C +L Sbjct: 70 ILLGLSGGKDSM-LLATIFAYMKKHAPFKFEFLAMTIDY----GRGGEYEYIFEYCKKLN 124 Query: 82 IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + + + + K T + R + A I AH DD E+ Sbjct: 125 IPYELNRTQIFKILENHKKEGTIYCSFCSRMRRGELYSMALERGFNKIALAHHLDDAAES 184 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW---CED 191 M + A L M L + RP + R I F+ NI C Sbjct: 185 FMMNLTYNGA-----LRSMPPYYKAQNGLGVIRPLIFVRERQIIDFIASNNIYIAPDCNC 239 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R + R +++ +DL K N L + +H +S Sbjct: 240 PINWLPEDKRPKARAANKEL-----------LKDLESKNPNLFKSLKNAFSNIHAQS 285 >gi|222478949|ref|YP_002565186.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451851|gb|ACM56116.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 326 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 24/132 (18%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++ +SGG DS +AL +L D FGK ++ A+++ + + + ++ Sbjct: 57 VIGLSGGKDS----VALTQILDD-VFGKDPRVEMLALTIHEGIEGYRDESIDATIELTED 111 Query: 80 LRIAHSVVSWKN-----------SKPQTGLMAAAREA---RYALISEHAKTINATLIMTA 125 L I H VVS++ S P+ MAA R L+ ++A +A ++T Sbjct: 112 LSIRHEVVSYEEEFDVQMDDVVESDPEN--MAACAYCGVFRRDLLEKYAAEFDADKLLTG 169 Query: 126 HTFDDQLETVYM 137 H DD+ +T M Sbjct: 170 HNLDDEAQTAMM 181 >gi|313127354|ref|YP_004037624.1| hypothetical protein Hbor_26270 [Halogeometricum borinquense DSM 11551] gi|312293719|gb|ADQ68179.1| conserved hypothetical protein TIGR00269 [Halogeometricum borinquense DSM 11551] Length = 322 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 22/135 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSD 75 P ++ +SGG DS+ L L D +FGK I+ A+++ + + V + Sbjct: 53 PERWVIGLSGGKDSVVLTHIL-----DETFGKDPRIEMMALTIHEGIEGYRDESVEACVE 107 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEHAKTINATLI 122 + L++ H +V+++ + + ARE R L+ +A+ +A + Sbjct: 108 LSDDLQMRHELVTYE-EEFGVQMDDVAREDPENMAPCAYCGVFRRDLLESYAEEFSADKL 166 Query: 123 MTAHTFDDQLETVYM 137 +T H DD+ ET M Sbjct: 167 LTGHNLDDEAETALM 181 >gi|254369146|ref|ZP_04985158.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122096|gb|EDO66236.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 251 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80 +++ +SGG DS GLL LH ++ D+++ I ++D ++ +Y+ D+ Sbjct: 28 VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLKKYLDDLGVSY 86 Query: 81 RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + VV K + +T +R R I +AK I+ H DD ++++ Sbjct: 87 EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194 M +G S + D + RP + + D+ F + N P N Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199 Query: 195 -TDDRFERVRVRRFVRDIDL 213 + + +R +V++ ++D+ L Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219 >gi|289424614|ref|ZP_06426397.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187] gi|289428939|ref|ZP_06430619.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165] gi|295129827|ref|YP_003580490.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137] gi|289155311|gb|EFD03993.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187] gi|289157940|gb|EFD06163.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165] gi|291376956|gb|ADE00811.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137] Length = 317 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 16/185 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V SGG DS+ L AL S + R + + VDH L++ + + D+ R + Sbjct: 34 VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLVRRGM 90 Query: 83 AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V V P AA R AL+ ++ HT DDQ E V + Sbjct: 91 DACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 146 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G G + + W P L RR + + +DP N D RF Sbjct: 147 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 199 Query: 201 RVRVR 205 R RVR Sbjct: 200 RSRVR 204 >gi|78777588|ref|YP_393903.1| hypothetical protein Suden_1391 [Sulfurimonas denitrificans DSM 1251] gi|78498128|gb|ABB44668.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 260 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 17/186 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS+ L+ AL F K +F A+++ + + E + + C + Sbjct: 37 ILVGLSGGKDSLTLIHALKEQQRRAPF-KFEFIAVTISYGMGENYEK----LKAHCKEHK 91 Query: 82 IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + V ++ + + + R + A+ + H DD E+ Sbjct: 92 IDYEVYDTNIYDIAEDKIRKNSSFCSFFSRMRRGSLYSAAQKYGCNKVALGHHMDDAAES 151 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M ++ G L + D + + RP + R + +F+ + NI D + Sbjct: 152 FFM----NFIYNGQ-LRSLAPKYKADRGVIVIRPLIEMRERQLEAFVRENNIETIGDEAC 206 Query: 195 TDDRFE 200 RF+ Sbjct: 207 PSMRFD 212 >gi|89256143|ref|YP_513505.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS] gi|115314615|ref|YP_763338.1| PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156502170|ref|YP_001428235.1| ATPase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010589|ref|ZP_02275520.1| hypothetical protein Ftulh_07739 [Francisella tularensis subsp. holarctica FSC200] gi|254367466|ref|ZP_04983492.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp. holarctica 257] gi|290953286|ref|ZP_06557907.1| ATPase [Francisella tularensis subsp. holarctica URFT1] gi|295313492|ref|ZP_06804088.1| ATPase [Francisella tularensis subsp. holarctica URFT1] gi|122325361|sp|Q0BMI3|TTCA1_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|122500903|sp|Q2A447|TTCA1_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|205830351|sp|A7NBC6|TTCA1_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|89143974|emb|CAJ79199.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129514|gb|ABI82701.1| possible PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|134253282|gb|EBA52376.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp. holarctica 257] gi|156252773|gb|ABU61279.1| putative ATPase, PP-loop family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 251 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRLR 81 ++ +SGG DS GLL LH ++ D+++ I ++D ++R Y+ D+ Sbjct: 29 MLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSYE 87 Query: 82 I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + VV K + +T +R R I +AK I+ H DD ++++ M Sbjct: 88 IETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLLM 146 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN--- 194 +G S + D + RP + + D+ F + N P N Sbjct: 147 S----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLCG 200 Query: 195 TDDRFERVRVRRFVRDIDL 213 + + +R +V++ ++D+ L Sbjct: 201 SQENLKRKKVKKLIQDLAL 219 >gi|148726265|emb|CAL07962.2| hypothetical protein [Ruminococcus flavefaciens] Length = 248 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 20/201 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILV VSGG DS+ LL L V+ R G K A+++D D +++ C+ L Sbjct: 24 ILVGVSGGKDSLVLLDGL--VMLQRFIGIDYKVIAVTLDMGFTNGTMD-FSPITEHCNAL 80 Query: 81 ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +IA V +N L A R + + A + + H +DD Sbjct: 81 GVEYHIIPTQIAEIVFDVRNEPSPCSLCA---RMRRGALHDAANDLGCNKVALGHNYDDT 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET M + E +G T L + + RP + +++R + + Sbjct: 138 VETFIMNL---FTEGRIGCYSP-STYLTHKKVTVIRPLVLAPEKEVRRAARRNALPVVTS 193 Query: 192 PSNTDDRFERVRVRRFVRDID 212 D R + + F+ D++ Sbjct: 194 VCPADGHTNRQKTKEFIADME 214 >gi|169350219|ref|ZP_02867157.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552] gi|169293002|gb|EDS75135.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552] Length = 252 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 16/198 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--SR 79 I V VSGG DS+ LL L + F +KF + V H + V C + Sbjct: 32 ICVGVSGGKDSVLLLYCLSLY---KKFADVKFDVVGV-HVEMGFPNMDFSEVDAFCRKNE 87 Query: 80 LRIAHSVVS----WKNSKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133 + + H K +K G + + +++ AL+ + AK + AH DD +E Sbjct: 88 IELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYGCNKVAFAHHGDDAVE 147 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T++M Y K + D+N RP + DI + + + NI E Sbjct: 148 TLFMNMV--YGGKIATFTPKMYLSRTDMNFI--RPLVYAYESDIVAAVKEANIPIVESTC 203 Query: 194 NTDDRFERVRVRRFVRDI 211 D +R ++ + D+ Sbjct: 204 PADKHTKREEFKQLLNDL 221 >gi|317048255|ref|YP_004115903.1| PP-loop domain-containing protein [Pantoea sp. At-9b] gi|316949872|gb|ADU69347.1| PP-loop domain protein [Pantoea sp. At-9b] Length = 311 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCS 78 I+V +SGG DS LL L ++ + + FS ++V+ ++ A Y+ + Sbjct: 42 IMVCLSGGKDSYTLLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPAHVLPAYLDKLGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +I +S+V K + +T +R R ++ A + T I H DD L+T Sbjct: 99 EYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGCTKIALGHHRDDILQT 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ KGM M D D + RP CR +DI F Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199 >gi|315082137|gb|EFT54113.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL078PA1] Length = 311 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 19/205 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L AL S + R + + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++ + + D+ R + V V P AA R AL+ Sbjct: 65 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDE 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198 >gi|294102346|ref|YP_003554204.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261] gi|293617326|gb|ADE57480.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261] Length = 259 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 13/195 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS+ L+A + +S + + A +VD E A R +S+ C L Sbjct: 37 ILVGLSGGKDSL-FLLAALAAFRKKSPRRFELGACTVDITGGEMA---TRPLSEFCRSLN 92 Query: 82 IAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H V + SK + + R +IS A ++ H DD ETV Sbjct: 93 LEHYVTIYPISKIIKKREEKSPCSFCANIRRGIISSEAVERGYNVLALGHNLDDVAETVL 152 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M + + G S LW+ RP + +DI + ++ ED Sbjct: 153 M----NLFQTGRFKSFKPKFWQSRTGLWVIRPLIYIGEKDIMKEAQRLHLPVTEDKCPFS 208 Query: 197 DRFERVRVRRFVRDI 211 +R R R + ++ Sbjct: 209 LHTQRSRTRMLIENL 223 >gi|257438080|ref|ZP_05613835.1| ExsB family protein [Faecalibacterium prausnitzii A2-165] gi|257199411|gb|EEU97695.1| ExsB family protein [Faecalibacterium prausnitzii A2-165] Length = 266 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 22/200 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-------VRY-V 73 I+V VSGG DS+ L I L + F + A+++D A D RY V Sbjct: 30 IMVGVSGGKDSVALTIGLAQLRRYLGF-DYEVVAVTLDPQFDHQAVDYSPLAALFARYGV 88 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I V ++ K L A R R AL + A+ + + H DD +E Sbjct: 89 PYEVRRTEIGPIVFEYRQEKNPCSLCARLR--RGALHTA-AQELGCNKVALGHHLDDAVE 145 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWCE 190 T YM R+ G G C + + L+ L + RP L ++R + + + + Sbjct: 146 TFYMNLWRE------GRIG-CFSPVTQLDRRGLTLIRPMLLATEHEVRCAVKEEDFPIVK 198 Query: 191 DPSNTDDRFERVRVRRFVRD 210 D R + + FVR+ Sbjct: 199 SRCPADGVTVREQTKDFVRE 218 >gi|50841748|ref|YP_054975.1| hypothetical protein PPA0258 [Propionibacterium acnes KPA171202] gi|61216489|sp|Q6AB49|TILS_PROAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50839350|gb|AAT82017.1| conserved protein [Propionibacterium acnes KPA171202] gi|313765283|gb|EFS36647.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA1] gi|313793177|gb|EFS41244.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA1] gi|313802735|gb|EFS43953.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA2] gi|313806392|gb|EFS44899.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA2] gi|313810942|gb|EFS48656.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA1] gi|313814560|gb|EFS52274.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA1] gi|313815348|gb|EFS53062.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA1] gi|313817471|gb|EFS55185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA2] gi|313821993|gb|EFS59707.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA1] gi|313824111|gb|EFS61825.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA2] gi|313826478|gb|EFS64192.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA1] gi|313828787|gb|EFS66501.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA2] gi|313831707|gb|EFS69421.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL007PA1] gi|313834411|gb|EFS72125.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL056PA1] gi|313840398|gb|EFS78112.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL086PA1] gi|314916064|gb|EFS79895.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA4] gi|314917215|gb|EFS81046.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA1] gi|314921715|gb|EFS85546.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA3] gi|314926568|gb|EFS90399.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA3] gi|314931078|gb|EFS94909.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL067PA1] gi|314955053|gb|EFS99459.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA1] gi|314959092|gb|EFT03194.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA1] gi|314961366|gb|EFT05467.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA2] gi|314964589|gb|EFT08689.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA1] gi|314969688|gb|EFT13786.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA1] gi|314974753|gb|EFT18848.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA1] gi|314977049|gb|EFT21144.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL045PA1] gi|314980291|gb|EFT24385.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA2] gi|314985465|gb|EFT29557.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA1] gi|314987375|gb|EFT31466.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA2] gi|314989084|gb|EFT33175.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA3] gi|315078394|gb|EFT50425.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA2] gi|315082718|gb|EFT54694.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA2] gi|315086077|gb|EFT58053.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA3] gi|315087663|gb|EFT59639.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA1] gi|315097300|gb|EFT69276.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL038PA1] gi|315099488|gb|EFT71464.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA2] gi|315102006|gb|EFT73982.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA1] gi|315106294|gb|EFT78270.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA1] gi|315110072|gb|EFT82048.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA2] gi|327331330|gb|EGE73069.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA2] gi|327333316|gb|EGE75036.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA3] gi|327334836|gb|EGE76547.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL097PA1] gi|327445206|gb|EGE91860.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA2] gi|327447289|gb|EGE93943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA1] gi|327450264|gb|EGE96918.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA2] gi|327454530|gb|EGF01185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA3] gi|327456600|gb|EGF03255.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA2] gi|327457124|gb|EGF03779.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL092PA1] gi|328755584|gb|EGF69200.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA1] gi|328756910|gb|EGF70526.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA2] gi|328758406|gb|EGF72022.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL020PA1] gi|328761143|gb|EGF74687.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL099PA1] gi|332674666|gb|AEE71482.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes 266] Length = 311 Score = 36.6 bits (83), Expect = 7.4, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 19/205 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L AL S + R + + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++ + + D+ R + V V P AA R AL+ Sbjct: 65 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDE 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198 >gi|313835713|gb|EFS73427.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA2] gi|314928385|gb|EFS92216.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL044PA1] gi|314970191|gb|EFT14289.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA3] Length = 317 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R G G + + W P L RR Sbjct: 122 VLLGHTLDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEIRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205 + + +DP N D RF R RVR Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVR 198 >gi|77360792|ref|YP_340367.1| hypothetical protein PSHAa1852 [Pseudoalteromonas haloplanktis TAC125] gi|123588359|sp|Q3IHG8|TTCA_PSEHT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|76875703|emb|CAI86924.1| conserved protein of unknown function, contains adenine nucleotide alpha hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 304 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V +SGG DS +L L + + IKF V+ ++ E + +L Sbjct: 40 IMVCLSGGKDSYTMLDMLQHL---KRVAPIKFELFVVNLDQKQPGFPE-HVLPQYLDKLN 95 Query: 82 IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V T ++ + R ++ AK + AT I H DD +ET Sbjct: 96 VEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ K M M D + + RP C+ DI + Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKESDISQY 197 >gi|254509242|ref|ZP_05121337.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16] gi|219547833|gb|EED24863.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16] Length = 265 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS +L L L+ + IKF ++V+ ++ E + D L Sbjct: 8 VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPE-HILPDYFETLN 63 Query: 82 I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +SVV K + +T +R R L S A+ I AT + H DD +E Sbjct: 64 IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMDDIVE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++ K M D D + RP CR +D+ Sbjct: 123 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 162 >gi|87119920|ref|ZP_01075816.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121] gi|86164622|gb|EAQ65891.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121] Length = 280 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 ++V +SGG DS +L L ++ ++ I FS ++V+ ++ E Y+S + Sbjct: 42 VMVCLSGGKDSYTMLEILRNL---QASAPIDFSIVAVNLDQKQPGFPEHILPEYLSSIGV 98 Query: 79 RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +S+V + +T +R R +L A I AT I H DD LET Sbjct: 99 DYHILERDTYSIVKELVPEGKTTCGLCSRLRRGSLYG-FADEIGATKIALGHHRDDILET 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ K M + D D + RP C+ +DI +F Sbjct: 158 LFLNMFFGGKIKSMPPKLLSD----DGRHMVIRPLAYCKEKDIEAF 199 >gi|217969129|ref|YP_002354363.1| C32 tRNA thiolase [Thauera sp. MZ1T] gi|217506456|gb|ACK53467.1| PP-loop domain protein [Thauera sp. MZ1T] Length = 317 Score = 36.6 bits (83), Expect = 8.4, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 13/165 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V VSGG DS LL L + L +R+ + A+++D + D V Y + Sbjct: 53 VMVCVSGGKDSYTLLSCLLA-LRERAPVDFRIVAMNLDQ-KQPGFPDHVLPAYFESIGVE 110 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI +S+V K + +T +R R +I A I AT I H DD LET+ Sbjct: 111 YRIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGIIYRTATEIGATRIALGHHRDDMLETL 169 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ K M + D D + RP C DI F Sbjct: 170 FLNMFFGGKIKAMPPKLVSD----DGKHVVIRPLAYCTEADIARF 210 >gi|325973331|ref|YP_004250395.1| GMP synthase [Mycoplasma suis str. Illinois] gi|325989766|ref|YP_004249465.1| GMP synthase (glutamine-hydrolyzing) [Mycoplasma suis KI3806] gi|323574851|emb|CBZ40511.1| GMP synthase (Glutamine-hydrolyzing) [Mycoplasma suis] gi|323651933|gb|ADX98015.1| GMP synthase [Mycoplasma suis str. Illinois] Length = 538 Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S IE++R + + A ILVA+SGG DS L+ L + DR+ + IS + Sbjct: 222 SKIEALREKYKEQLKDARILVALSGGLDSSVLIHFLAEMTIDRNIYPV---YISTGLVPK 278 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 E + ++Y ++ S R VVSW++S Sbjct: 279 EKEEKVIKYFANKFSNFR----VVSWEDS 303 >gi|163800908|ref|ZP_02194808.1| putative ATPase [Vibrio sp. AND4] gi|159175257|gb|EDP60054.1| putative ATPase [Vibrio sp. AND4] Length = 297 Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS +L L L+ + IKF ++V+ ++ E + D L Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95 Query: 82 I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +SVV K + +T +R R L S A+ I AT + H DD +E Sbjct: 96 IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMDDIVE 154 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++ K M D D + RP CR +D+ Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194 >gi|312136135|ref|YP_004003473.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776186|gb|ADQ05673.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL] Length = 235 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 18/198 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79 I V VS G DS+ +L L + R F KF AI+VD + + + C + Sbjct: 24 IAVGVSAGKDSLTMLYTLSFM---RRFYPKKFDVVAITVDMGFEGM---DFLPIKEFCDK 77 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + + + + + R +++ AK++ + H DD +E Sbjct: 78 IDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ +G T L + + RP + + D+RS + + +P Sbjct: 138 TFFL----SLFYEGRIYCFSPKTYLDRTQVTVIRPMIYVKEHDLRSAAKKLELPVITNPC 193 Query: 194 NTDDRFERVRVRRFVRDI 211 + + R +++ FV+ + Sbjct: 194 PANGKTNRQKMKEFVKSL 211 >gi|261252977|ref|ZP_05945550.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP 102891] gi|260936368|gb|EEX92357.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP 102891] Length = 297 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS +L L L+ + IKF ++V+ ++ E + D L Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95 Query: 82 I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +SVV K + +T +R R L S A+ I AT + H DD +E Sbjct: 96 IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHLDDIVE 154 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++ K M D D + RP CR +D+ Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194 >gi|323499029|ref|ZP_08104009.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis DSM 21326] gi|323315864|gb|EGA68895.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis DSM 21326] Length = 297 Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS +L L L+ + IKF ++V+ ++ E + D L Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95 Query: 82 I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +SVV K + +T +R R L S A+ I AT + H DD +E Sbjct: 96 IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHLDDIVE 154 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++ K M D D + RP CR +D+ Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194 >gi|330445966|ref|ZP_08309618.1| PP-loop family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490157|dbj|GAA04115.1| PP-loop family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 25/168 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRE--TAKDE 69 ++ +SGG DS +L L L+ + IKF ++V +H L E + + Sbjct: 40 VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPEHILPEYFASLNI 96 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 Y+ D + +SVV K + +T +R R L S A+ I AT I H D Sbjct: 97 PYYIVD-----KDTYSVVKEKIEEGKTTCGLCSRLRRGTLYS-FAEKIGATKIALGHHLD 150 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 D +ET+++ K M D D + RP CR +D+ Sbjct: 151 DIVETLFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLAYCREKDL 194 Searching..................................................done Results from round 2 >gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] gi|254040223|gb|ACT57019.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 587 bits (1514), Expect = e-165, Method: Composition-based stats. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH Sbjct: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT Sbjct: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 Query: 421 PFF 423 PFF Sbjct: 421 PFF 423 >gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 448 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 302/423 (71%), Positives = 363/423 (85%), Gaps = 1/423 (0%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFLSP+ESV+ FVRSLV PAHILVAVSGGSDS+GLLIALHS+LSD SF IK SAISVDH Sbjct: 1 MFLSPVESVKSFVRSLVCPAHILVAVSGGSDSIGLLIALHSILSDNSFRAIKISAISVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 +R+ AKDEV+YV D+CSRL I H+VV WK+ KP+TGLMAAAR+ARYALI ++A I AT Sbjct: 61 GIRDEAKDEVKYVFDICSRLGIPHAVVVWKDQKPKTGLMAAARKARYALIVDYAMKIGAT 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 L++TAHTFDDQLETVYMRSQRDYAEKGMGLSG+ +T+LYD+ LWI+RPFL CRREDIRSF Sbjct: 121 LVVTAHTFDDQLETVYMRSQRDYAEKGMGLSGIPETVLYDMRLWIARPFLCCRREDIRSF 180 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 LLQRNI WCEDPSN DDRFERVRVRR ++DID H +Y K++KF++LR+ VNN VA LIP+ Sbjct: 181 LLQRNIGWCEDPSNADDRFERVRVRRLIQDIDPHKMYRKIEKFRNLRIAVNNNVATLIPQ 240 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 YL VH +S+IA+S+++LNID LL YLL+VS AICGG+ S PGYRSMERV+ +LK+ K+G Sbjct: 241 YLKVHCQSVIALSENVLNIDLILLSYLLKVSIAICGGKTSFPGYRSMERVIAYLKNQKQG 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 C+SIGRVVIDRR NFLWITRAVR+LPT+ L+ +ET VWDGRY+F N S+ I+IG + Y Sbjct: 301 CISIGRVVIDRRVNFLWITRAVRDLPTVKLHFKETAVWDGRYRFTNSSNESIRIGAKVYN 360 Query: 361 KA-DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419 K D SG+P I+AQRA SS+PS+EGG+P++APFSRF+T FDLPVA+A SISF KVFIP+ Sbjct: 361 KEMDFSSGMPSIVAQRAFSSLPSEEGGEPVIAPFSRFITIFDLPVAHAISISFDKVFIPQ 420 Query: 420 LPF 422 PF Sbjct: 421 SPF 423 >gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli Kim 5] Length = 493 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 165/485 (34%), Positives = 236/485 (48%), Gaps = 72/485 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPHAAILQFLASLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHRLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ + A LI Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGDKPKTGVMAAAREARYDLLAESAERLGANLIA 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L++ WI RP L R DIR+FL + Sbjct: 127 TGHTLDDQRETLQMRGMRTEQVS----SGIADAVLFNRRFWILRPLLFSSRADIRAFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W EDPSN D ++ERVR+RR + A+ ++ + R +++ A + ++ Sbjct: 183 RGVPWIEDPSNEDVKYERVRIRRRLS--ADPAMETDIRAAWEARRALSSRAADWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + +S D L D +L Y L A+ GGQ +PG M R++ F G+ G ++ Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMARLLSFATGGEPGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 IGRVV DRR + L+ TR R + +IL P E VWDGR++ N S + I Q+ + Sbjct: 301 IGRVVFDRRRDGLYFTRESRGIVPMILRPGEAGVWDGRFEAVNGSGETVTIKAQATHYSL 360 Query: 364 VP----------------------------------------------------SGIPPI 371 +P G+P Sbjct: 361 IPVSSGLRPRDVTGILPPRVGAVDDSTKQGESSAPKDLGALDSCDEHRNEGEWSRGLPKA 420 Query: 372 IAQRALSSMPSKE--------------GGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFI 417 +RA++S P+ P APF RF+T+FD A S F Sbjct: 421 AWKRAVASAPAFAVDGHPLSLQSVGSIHLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPY 480 Query: 418 PRLPF 422 LPF Sbjct: 481 AGLPF 485 >gi|190893272|ref|YP_001979814.1| cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CIAT 652] gi|190698551|gb|ACE92636.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CIAT 652] Length = 458 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 164/450 (36%), Positives = 233/450 (51%), Gaps = 37/450 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++R F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ A LI+ Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYELLAESAERFGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT+DDQ ET+ MR R SG+ D +L+D WI RP L R DIRSFL + Sbjct: 127 TGHTYDDQRETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R ++W +DPSN D ++ERVRVRR + A ++ R+ +++A A + +Y T Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSP--DPATETDIRAAWKERLALSSAAAEWLDRYFT 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + + D L D +L Y L A+ GGQ PG MER++LF + ++ Sbjct: 241 LQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358 +GRVV D R + L++ R R + L L E VWDGR++ N S + +I Q Sbjct: 301 VGRVVFDLRRDGLYLARESRGILPLTLRSGEAGVWDGRFEAANGSGATTRIEAQGAAARK 360 Query: 359 ------------YRKADVPSGIPPIIAQRALSSMPSKEGGK--------------PLLAP 392 + G+P +RA++S P G + P AP Sbjct: 361 DLGGARDSCDEHRNEGGESRGLPKAAWKRAVASAPVLSGEEVPLSPESIQAIHLTPYFAP 420 Query: 393 FSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 F RF+T+FD A S F +PF Sbjct: 421 FDRFLTRFDFIFADRLSAVFAMAPYAGVPF 450 >gi|327193463|gb|EGE60359.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CNPAF512] Length = 501 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 165/478 (34%), Positives = 237/478 (49%), Gaps = 65/478 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++R F+ SL PA ILVA+SGGSDS GLL+ L + K A +VDH LR Sbjct: 7 SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKASLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE + V+ +C+ L I H + +W+ KP+TG+MAAAR+ARY L++E A+ A LI+ Sbjct: 67 AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAARKARYELLAESAERFGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT+DDQ ET+ MR R SG+ D +L+D WI RP L R DIRSFL + Sbjct: 127 TGHTYDDQCETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R ++W +DPSN D ++ERVRVRR + A ++ R+ +++A A + ++ Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLS--ADPATETDIRAAWKERLALSSAAAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + + D L D +L Y L A+ GGQ PG MER++LF + ++ Sbjct: 241 LQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +GRVV D R + L++ R R + L L P E VWDGR++ N S + I+I Q R + Sbjct: 301 VGRVVFDLRRDGLYLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSP 360 Query: 364 VPS---------------------------------------------GIPPIIAQRALS 378 +P+ G+P +RA++ Sbjct: 361 IPAPVTGIQPPRVGAVNDSTVPDESAARKDLGARDSCDERRNEGGESRGLPKAAWKRAVA 420 Query: 379 SMPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 S P G + P APF RF+T+FD A S F LPF Sbjct: 421 SAPVLSGEEVPLSPESIQAINLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPF 478 >gi|86359050|ref|YP_470942.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CFN 42] gi|86283152|gb|ABC92215.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli CFN 42] Length = 486 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 233/478 (48%), Gaps = 65/478 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP E++ F+ SL PA ILVA+SGGSDS GLL+ L + ++ A +VDH LR Sbjct: 7 SPREAIVQFLTSLQSPACILVAISGGSDSTGLLLLLAEAMKAAPDLEMSLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H + W+ KP+TG+MAAAREARY+L+++ A+ + A LI+ Sbjct: 67 AGSADEAREVAALCASLGIPHMIARWQGEKPKTGIMAAAREARYSLLADAAEALGANLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L+D LWI RP L R DIR+FL Sbjct: 127 TGHTLDDQRETLRMRGMRTEQLS----SGIADAVLFDRRLWILRPLLFATRADIRAFLRA 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D R+ERVR RR + A+ ++ + R+ +++ + ++ Sbjct: 183 RGVRWIDDPSNEDIRYERVRTRRQLS--AGPAMPTDIRAVWEERLTLSSRAGEWLDRHFQ 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + + L D +L Y L A+ GGQ +PG M+R++ F G ++ Sbjct: 241 LHGGVLGQVMPEGLRQDRAVLDYTLGRLTAVFGGQPFVPGRVQMDRILAFASGSGLGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 GRVV D R + L++ R R + L+L P E VWDGR++ +N + I + Q+ R + Sbjct: 301 AGRVVFDLRRDGLYLARENRGIMPLVLRPGEAGVWDGRFRVENRLGTTISVEAQTTRSSL 360 Query: 364 VP---------------------------------------------SGIPPIIAQRALS 378 +P +P +RA++ Sbjct: 361 IPVPVTGIQPPRVGAVNDSSMRNESCAPKNFGALNSCDKHRNEGGWGKHLPKAAWKRAIA 420 Query: 379 SMPSKEGG--------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 S P+ P APF RF+T+FD A S F LP Sbjct: 421 SAPALSSDGAYLSSKSALTAELTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPL 478 >gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4] gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4] Length = 454 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 137/433 (31%), Positives = 229/433 (52%), Gaps = 19/433 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +SP ++ F+ + P +LVA+SGGSDS GLL+ALH L + A ++DH L Sbjct: 28 ISPEAAIAAFLDRINDPLRLLVAISGGSDSTGLLLALHEQLQAMPAKTVTLHAATIDHGL 87 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R+ + E V+ +C+ L I H + W KP+TG+ AAAR ARY L++E AK I+A I Sbjct: 88 RDGSAAEAETVAALCATLGIPHEIRRWTGDKPKTGISAAARAARYQLLAEIAKEIDAAAI 147 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT DDQ+ET+ MR +R + GL+GM +++L++ ++WI+RP LR RR+ IR FL Sbjct: 148 LTGHTADDQIETIAMREKRSRNPRATGLAGMAESVLFENSIWITRPLLRSRRQAIRVFLQ 207 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R W +DPSN + +ER R+R + L Q+ R+ ++ A L+ + Sbjct: 208 DRGHGWVDDPSNDNPAYERARIRAHLSTDQQPGLP------QNERLSLSQGAAALVSTHA 261 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 T+ + ++ + + +L + L+ A GGQ PG ++ R++ + V Sbjct: 262 TMPLPGLVDLDNALFEAPRPILCHALQALIATVGGQPHGPGQDALVRLIALCEQPPGARV 321 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ----- 357 ++GR + R + +++ R RNLP I+ P ET +WDGR+ N+ + ++ P Sbjct: 322 TLGRCLAHRHRHGIYLVREGRNLPHGIVKPGETVLWDGRWHISNIGRAESRVQPGETKTD 381 Query: 358 ----SYRKADVPSGIPPI----IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFS 409 + + +P+ P+ +A+++L + P++AP+ F+ FD P+A A + Sbjct: 382 QTSPTLATSPLPASSLPVSLAALARQSLPGIGPNLHATPVIAPYQGFLPGFDWPLAVALA 441 Query: 410 ISFGKVFIPRLPF 422 F F Sbjct: 442 GLFDAPGFLSPCF 454 >gi|218674235|ref|ZP_03523904.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli GR56] Length = 486 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 160/478 (33%), Positives = 238/478 (49%), Gaps = 65/478 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQAAILQFLESLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H + +W+ KP+TG+MAAAREARY L++E A+ + A LI+ Sbjct: 67 AGSADEARQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYDLLAESAERLGAKLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT DDQ ET+ MR R SG+ D +L+D WI RP L R +IR+FL + Sbjct: 127 TGHTLDDQRETLLMRGMRTEQRS----SGIADAVLFDRRFWILRPLLFSSRANIRAFLRE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R+++W +DPSN D ++ERVRVRR + A + + + R+ +++A A + ++ Sbjct: 183 RDVAWIDDPSNEDVKYERVRVRRQLS--ADRATEMDIHAAWEARLALSSAAAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + +S D L D +L Y L A+ GGQ +PG MER++ F+ G+ G ++ Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMERLLSFVTGGEPGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +GRVV D R + L+++R R + L+L P VWDGR++ N S ++ + + Sbjct: 301 VGRVVFDLRRDGLYLSRESRGILPLVLRPGVAGVWDGRFRVCNGSAVNARMEALAGLSSL 360 Query: 364 VP---------------------------------------------SGIPPIIAQRALS 378 +P G+P +RA++ Sbjct: 361 IPVLVTGIQPPRVGAVNDSTKQDESSAPNDLGAEDSCDEHRNKGGEGRGLPKAAWKRAVA 420 Query: 379 SMPSKE--------------GGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 S P+ P APF RF+T+FD A S F P Sbjct: 421 SAPAFSVDGHPLSPESVGSIRLAPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGPPL 478 >gi|241206181|ref|YP_002977277.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860071|gb|ACS57738.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 491 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 165/483 (34%), Positives = 235/483 (48%), Gaps = 70/483 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA ILVA+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQLAILQFLTSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLYAATVDHALR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L IAH+++ W+ KP+TG+MAAAREARY L++ AK A LI+ Sbjct: 67 AGSADEAREVAALCASLGIAHTIMIWQGDKPKTGIMAAAREARYGLLATAAKEFKADLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HTFDDQ ET+ MR R +G+ D +L+D + WI RP L R DIR+FL + Sbjct: 127 TGHTFDDQRETLQMRGMRTEQVS----TGIADAVLFDRSFWILRPLLFSTRADIRAFLKE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D +ERVR+RR + + ++ + R +++ A + ++ Sbjct: 183 RGVPWIDDPSNEDTTYERVRMRRQLS--VDAGVERTIQAACEERPALSSKGAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + D L D +L Y L AA+ GGQ PG MERV+ F+ + G ++ Sbjct: 241 LHGGLLGQVMPDGLRQDRAVLNYALGRLAAVFGGQPFAPGRVQMERVLAFVTGSEPGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358 GRVV D R + L++ R R + L+L P E VWDGR+ +N + I + + Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLLLQPGEAGVWDGRFYARNGLSTSIAVEAATLYAPS 360 Query: 359 -----------------------------------YRKADVP----------SGIPPIIA 373 R +P +P Sbjct: 361 FLSSDLTRELSEESSAPKSLGANDTSRFIESITAQTRGGWIPVTSTGMRGRMHHLPKAAW 420 Query: 374 QRALSSMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419 +RA++S P S EG P APF RF+T+FD A S F R Sbjct: 421 KRAVASAPVLSAEGNLLTEECARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYAR 480 Query: 420 LPF 422 LP Sbjct: 481 LPL 483 >gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3] gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3] Length = 445 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 160/436 (36%), Positives = 245/436 (56%), Gaps = 21/436 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P+ + R FV +L P HIL+A+SGGSDS GLL+A H ++ +++ SA++VDH L Sbjct: 13 VAPLAAARSFVENLRKPVHILIAISGGSDSTGLLLATHEARAEAGSDRVQLSAVTVDHAL 72 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + DE VS +C+ L I H+V W + KP +G+ A+R ARY+LI+ A I A L+ Sbjct: 73 RAESADEAHKVSLLCAELGIPHTVRRWDDPKPASGISEASRLARYSLIAGVASDIGADLV 132 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MT HT DQ ETV MR+ R + + +GL+GM D +LY WI RPFL C R++IR F+L Sbjct: 133 MTGHTLGDQRETVAMRAARSGSSENLGLAGMADAVLYGGRHWIMRPFLTCERQEIRDFVL 192 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R+ W +DPSN + R+ERVRVR+ + + + R + A + + + Sbjct: 193 SRSRGWFDDPSNDNARYERVRVRQSLSG----SPPPFDAQAAVKRQAYSEKTAFFLQQNV 248 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 V ++ +S + L D + L V A GG+ P SM+RV+ FLK+G+ G + Sbjct: 249 EVFHATLARLSDEGLMPDLPEFRHGLAVLIANLGGRAYFPAASSMDRVLQFLKTGENGRI 308 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY--- 359 ++GRV++DRR + L++ R RN+P L + +WD R+ +N S + I Sbjct: 309 TVGRVLLDRRKDGLYLFREHRNMPELQVEAGGQGLWDDRFLVKNTSAFPVNIAAGRTGGI 368 Query: 360 -RKADVPSGIPPIIAQRALSSMP----------SKEGG---KPLLAPFSRFMTKFDLPVA 405 A + +PP IA++A++ +P S EG P LAPF F+ +FDL +A Sbjct: 369 VDAAALFPAVPPGIAKQAMAILPQIATLVPPRASPEGAISIVPRLAPFDLFLPRFDLELA 428 Query: 406 YAFSISFGKVFIPRLP 421 A ++ FG+ P+ P Sbjct: 429 NAIAVLFGRAAYPQPP 444 >gi|116253706|ref|YP_769544.1| tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae 3841] gi|115258354|emb|CAK09456.1| putative tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 485 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 160/477 (33%), Positives = 233/477 (48%), Gaps = 64/477 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP ++ F+ SL PA IL A+SGGSDS GLL+ L + KI A +VDH LR Sbjct: 7 SPQLTILQFLTSLQSPARILAAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + DE R V+ +C+ L I H+ + W+ KP+TG+MAAAREARY L+ A++ A LI+ Sbjct: 67 AGSADEARDVAALCASLGIPHTTMIWEGDKPKTGIMAAAREARYGLLETAAESFEADLIV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HTFDDQ ET+ MR R +G+ D +L++ WI RP L R DIR+FL + Sbjct: 127 TGHTFDDQRETLQMRGMRTEQIS----TGIADAVLFNRRFWILRPLLFSSRADIRAFLKE 182 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R + W +DPSN D ++ERVR+RR + D + + + R+ +++ A + ++ Sbjct: 183 RGVPWIDDPSNEDIKYERVRMRRQLS--DDAGMEKDIGAAWEERLALSSRGAEWLDRHFR 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 +H + + D L D +L Y+L AA+CGGQ +PG MERV+ F G ++ Sbjct: 241 LHGGLLGQVIPDGLRQDRAVLDYVLARLAAVCGGQPFVPGRAQMERVLTFATGTGLGRMT 300 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358 GRVV D R + L++ R R + L+L P E VWDGR+ +N + I + + Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLVLQPGEAGVWDGRFYARNGLSTSIVVEAATLYAPS 360 Query: 359 -----------------------------YRKADVP----------SGIPPIIAQRALSS 379 R +P +P +RA++S Sbjct: 361 FLCLSQESSASKSLGAKDTSRFIGSITAQTRGGWIPVTSTGMRERMHHLPKAAWKRAVAS 420 Query: 380 MPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 P+ + P APF RF+T+FD A S F RLP Sbjct: 421 APALTSEEAPLFEESARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYARLPL 477 >gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium tumefaciens str. C58] gi|61216678|sp|Q8U9L7|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium tumefaciens str. C58] Length = 443 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 160/435 (36%), Positives = 237/435 (54%), Gaps = 21/435 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P+ + FV SL P HILVA+SGGSDS GLL+AL + G ++ SA++VDH L Sbjct: 13 VAPLAAASAFVESLRKPTHILVAISGGSDSTGLLLALQEAKAADDDG-LRLSAVTVDHAL 71 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + DE R V+ +C+ L I H+ W KP +GL A+R ARY LI++ A+ I A L+ Sbjct: 72 RPESADEARKVAMLCAELGIPHTTRRWDGPKPASGLSEASRLARYRLIADVAREIGADLV 131 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 ++ HT DQ ETV MR+ R +GLSGM D +LYD +LWI RPFL C R+ IR ++ Sbjct: 132 VSGHTIGDQRETVAMRAARSGGSDNLGLSGMADAVLYDAHLWIMRPFLACERQVIRDYVS 191 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 R+ W +DPSN + R+ERVRVR+ + H+ R ++ A+ + + Sbjct: 192 SRSRHWLDDPSNENIRYERVRVRQTL----PHSPIALDDSTAVRRQMLSERTAVFLRERA 247 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 V ++ ++ D +N D + L A GG+ P SMERV+ FLK+G+ G + Sbjct: 248 QVFHAALARLADDDVNPDLPEFRHGLAALIAALGGRSYFPAASSMERVLRFLKTGETGRM 307 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 ++GRV++DRR + L+I R RNLP L + VWD R+ +N SD I + A Sbjct: 308 TVGRVLLDRRRDGLYIFREQRNLPELQIESSGQAVWDDRFLVKNGSDFPINVAAGRVGTA 367 Query: 363 DVPSGI----PPIIAQRALSSMPSKEGG------------KPLLAPFSRFMTKFDLPVAY 406 + + P + + A++ +P P LAPF F+ +FDL +A Sbjct: 368 AQAAALFPSAPSGVVKPAMAGLPQIAAAAEGWVSTPEVAITPRLAPFDLFLPRFDLELAN 427 Query: 407 AFSISFGKVFIPRLP 421 A + FG+ P+ P Sbjct: 428 AIANLFGRPAYPQPP 442 >gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234] gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234] Length = 445 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 154/439 (35%), Positives = 225/439 (51%), Gaps = 22/439 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + I + R F+RS + P ILVA+SGGSDS GLL+ALH+ L F A +VDH Sbjct: 1 MPEAVIAAARRFLRSFIKPGRILVAISGGSDSKGLLVALHAALGTADFEGFSLVACTVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + DE V C+ L I H V W KP+ G+ AAAR RY +++E A A Sbjct: 61 ALRSDSADEAAAVGAFCAGLGIPHQVCRWPGDKPRAGIQAAARLKRYDMLAEAAAVFRAD 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I T HT DDQ ET+ MR RD +G G +GM +LY W+ RPFL RR DIR++ Sbjct: 121 CIATGHTLDDQNETIAMRGARDQG-QGHGSAGMAAAMLYGRRTWVLRPFLGLRRADIRAY 179 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L R I W +DPSN + FER RVR + + ++ LR+ + A+L+ + Sbjct: 180 LGGRGIGWFDDPSNENPLFERARVR---ASLAASGVAPPPRRGGQLRMASSARAAVLLGE 236 Query: 241 YLTVHMRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 +L VH + + + ID L A+ GG+ LPG ++ER+ FL+SG+ Sbjct: 237 HLRVHEGLVAEVAAAQAGRIDDPDWRRALMTVGAVIGGREHLPGRATIERLSGFLRSGEA 296 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI---QIGP 356 G ++ GRVV DRR + L++ R RNLP L + E+ WDGR+ ++ +L + Sbjct: 297 GRMTAGRVVFDRRRSGLYLYREPRNLPALRIGANESGTWDGRFNITSVGTALTICAEAEG 356 Query: 357 QSYRKADVPSGIPPIIAQRALSSMP--------------SKEGGKPLLAPFSRFMTKFDL 402 +R+ +G+P +A+RA P ++ + + P+ F+ FD Sbjct: 357 GVWRQRLFAAGLPEGVAKRASLVAPRVAPEDVGSLGSTAAEAKVECRIGPYDTFLPGFDR 416 Query: 403 PVAYAFSISFGKVFIPRLP 421 +A + FG+ P P Sbjct: 417 IMADTIGLLFGRDRYPAPP 435 >gi|222086970|ref|YP_002545504.1| cell cycle protein MesJ/cytosine deaminase-related protein [Agrobacterium radiobacter K84] gi|221724418|gb|ACM27574.1| cell cycle protein MesJ/cytosine deaminase-related protein [Agrobacterium radiobacter K84] Length = 429 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 158/429 (36%), Positives = 231/429 (53%), Gaps = 14/429 (3%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P + F+ SL PAHILVA+SGGSDS GLL AL L + SA ++DH LR Sbjct: 4 PEAAAADFIHSLFKPAHILVAISGGSDSTGLLAALAEHLKSLPNSDVTLSAATIDHGLRA 63 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A +E R V+ C+ L IAH W+ KP++G+MAAAREARY L++E + I+A +I+T Sbjct: 64 EAAEEAREVAAFCASLGIAHVARRWEGEKPKSGIMAAAREARYGLLAEISAEISANVIVT 123 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ET+ MR+ R + +G+ + +L+D +WI+RPFL CRR DIR++L R Sbjct: 124 AHTIDDQRETLAMRTARLNEGEAGAGTGISEAMLFDRRIWIARPFLACRRADIRAYLNGR 183 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +SW DPSN D R+ER+R R+ + R ++ A + +++ V Sbjct: 184 GMSWLNDPSNEDVRYERIRTRKSLLQ---EPALFPAPDAAAARAALSADAAAWLGEHVAV 240 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 H + AIS+ L+ D ++ Y L AA+ GG+ PG M R++ F+ G+ G + Sbjct: 241 HAGVLCAISRKALSADEGVIAYALSYLAAVFGGEPYGPGRERMRRILDFIGEGRPGRRTA 300 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-D 363 G VV D R + L++ R R++ L+L +WDGR+Q N + I + A + Sbjct: 301 GGVVFDLRRDGLYLMRESRDIRPLVLAAGADGIWDGRFQIGNHGAAAICVEATGTTGAME 360 Query: 364 VPSGIPPIIAQRALSSMPSKEGGK----------PLLAPFSRFMTKFDLPVAYAFSISFG 413 P G+P QRA + +P G P LAPF RF+T+F+L A + G Sbjct: 361 FPEGLPKGAVQRAGAVLPKVVAGDEGAAASVTIAPYLAPFDRFLTRFNLTFANRLAACLG 420 Query: 414 KVFIPRLPF 422 + P Sbjct: 421 REPYVPPPL 429 >gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021] gi|307300474|ref|ZP_07580254.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C] gi|307318339|ref|ZP_07597774.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83] gi|61216708|sp|Q92JY3|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021] gi|306896021|gb|EFN26772.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83] gi|306904640|gb|EFN35224.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C] Length = 453 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 159/446 (35%), Positives = 231/446 (51%), Gaps = 28/446 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +++ R F+RS + P ILVAVSGGSDSMGLL+ALHS ++ +A +VDH Sbjct: 1 MPHAVLDTARNFLRSFITPRRILVAVSGGSDSMGLLVALHSAIAADERRGFSLAACTVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V+ C+ L IAH + W+ +KP TG+ AAAR RY L++E A + A Sbjct: 61 ALRPQSACEAEDVAAFCAALGIAHRICRWEGAKPSTGIQAAARNKRYELLAEAADALGAD 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYA-------EKGMGLSGMCDTILYDLNLWISRPFLRCR 173 I HT DDQ ETV MR R +G G +GM ++LY +W+ RPFL Sbjct: 121 CIAIGHTRDDQQETVAMRIARGKGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLA 180 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R +IRSFL R +SW +DPSN + FERVRVR + L + R + Sbjct: 181 RAEIRSFLQARGVSWIDDPSNANPAFERVRVRARIATSGGMPTPLGNGR---QRAASSAR 237 Query: 234 VAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A LI K + VH + +S + ID L A++ GG+ +P + +++R+ Sbjct: 238 AAALIEKRIRVHEALVAEVSARHAGEIDDPDWRRALLTVASVLGGREHMPAFATVQRLSQ 297 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 FL+SG+ G ++ GRVV DRRA+ L++ R RNLP L + P WDGR+ ++ ++ Sbjct: 298 FLRSGEPGRMTAGRVVFDRRASGLYLYREARNLPVLAVGPGRQGAWDGRFTVKSRGPAVT 357 Query: 353 QIGPQSYR---KADVPSGIPPIIAQRALSSMP---SKEGGKPLLAP-----------FSR 395 S R K + +G+P IA+R + P S +G + Sbjct: 358 VAADASGRLWTKRLIDAGLPAGIAKRGSTVAPEIASTDGAGLAFGEAPAQVEYHIGLYDT 417 Query: 396 FMTKFDLPVAYAFSISFGKVFIPRLP 421 F+ FD +A A ++SFG+ P P Sbjct: 418 FLPGFDRIMADAVAVSFGRDRYPAPP 443 >gi|209550773|ref|YP_002282690.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536529|gb|ACI56464.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 492 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 157/485 (32%), Positives = 230/485 (47%), Gaps = 71/485 (14%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 SP E++ F+ SL P ILVA+SGGSDS GLL+ L + KI A +VDH L Sbjct: 6 RSPREAILQFLSSLQSPVRILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHAL 65 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + DE R V+ +C+ L IAH++++W+ KP TG+MAAAREARY+L++E A+ + A LI Sbjct: 66 RAGSADEAREVAALCASLGIAHAIMTWQGDKPITGIMAAAREARYSLLAEAAEALGADLI 125 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ET+ MR R +G+ D +L+D + WI RP L R DIR+FL Sbjct: 126 VTAHTLDDQRETLAMRGMRTEEVS----TGIADAVLFDRHFWILRPLLFSSRADIRAFLS 181 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++ W +DPSN D ++ERVR+R+ + + D R+ V+ A + + Sbjct: 182 EQGAGWIDDPSNEDVKYERVRIRQQLSADGGAE--ANISAVWDERLAVSAKGAEWLDHHF 239 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 +H + + + L D +L Y+L A+ GGQ PG MER++ F G+ + Sbjct: 240 KLHGGLLGQVMPEGLRQDRAVLDYVLGRLTAVFGGQPFAPGRAQMERLVAFAAGGEPARM 299 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 ++GRVV D R + L++TR R + L+L P E VWDGR++ N S ++I QS R + Sbjct: 300 TVGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRFEAVNRSAIDVRIEAQSGRSS 359 Query: 363 DVP----SGIPPIIAQRALSSMP---------------------------SKEGGKPLLA 391 +P PP + S++P G A Sbjct: 360 LIPVLVTGIQPPRVGAVNDSTIPKESPAPKDLGALDSCDIPRVKPEDRNEGGWGAGLPKA 419 Query: 392 PFSR-----------------------FMTKF-----------DLPVAYAFSISFGKVFI 417 + R +T + D A S F Sbjct: 420 AWKRAIASAPAISAQEVPLSAETAEAIHLTPYFAPFDRFLTRFDFIFANRLSAVFATAPY 479 Query: 418 PRLPF 422 R P Sbjct: 480 ARPPL 484 >gi|150397822|ref|YP_001328289.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419] gi|150029337|gb|ABR61454.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419] Length = 453 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 159/440 (36%), Positives = 235/440 (53%), Gaps = 28/440 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++ +F+RS P ILVAVSGGSDSMG+L+ALH+ ++ +A +VDH LR + Sbjct: 7 DTASYFLRSFTRPCRILVAVSGGSDSMGVLMALHAAIATGEHPGFSLAACTVDHALRPQS 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +E V+ C L IAH W+ +KP TG+ AAAR+ RY L++ A+ + A I+T H Sbjct: 67 AEEAASVAAFCRTLDIAHRTRRWEGAKPATGIQAAARKIRYELLAVAAEALGADCIVTGH 126 Query: 127 TFDDQLETVYMRSQRDYAE-------KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T +DQ ET+ MR R +G G +GM T+LY +W+ RPFLR R +IRS Sbjct: 127 TREDQHETIEMRRARSNGPGIDDGEGEGHGGAGMAATMLYGRRVWVLRPFLRLGRAEIRS 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 FL R ++W +DPSN + FERVRVR + D + L R + A A LI Sbjct: 187 FLDARAVAWIDDPSNANHAFERVRVRARIAASDDMQMPL---WGGRQRAASSAAAAGLIE 243 Query: 240 KYLTVHMRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + VH + I +++ D L + A+ GG+ LP +++R+ FL++GK Sbjct: 244 DRIRVHEALVAEITAENAGATDDPDWRRALLIVASALGGRDHLPARATVQRLSEFLRAGK 303 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 G ++ GRVV DRRA L++ R RNLP L L P +WDGR++ + +L+ S Sbjct: 304 PGRMTAGRVVFDRRAGGLYLYREARNLPVLALGPGGQGLWDGRFKITSGGPALVVTADAS 363 Query: 359 YRKAD---VPSGIPPIIAQRALSSMP--------SKEGGKPL------LAPFSRFMTKFD 401 R++ + +G+P I +RA + P G+ L +APF F+ FD Sbjct: 364 GRRSAQRLIDAGLPMGIVKRASTVAPGIAPADAAGIAYGEALAEIEYNIAPFDTFLPGFD 423 Query: 402 LPVAYAFSISFGKVFIPRLP 421 +A A ++SFG+ P P Sbjct: 424 RIMADAVAVSFGRERYPAPP 443 >gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 457 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 143/432 (33%), Positives = 212/432 (49%), Gaps = 35/432 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + AVSGGSDS L+ L DR K A+++DH LR + E + V+ +C+RL I Sbjct: 23 VAAVSGGSDSTA-LLLLLKHHLDRRAPATKLLAVTIDHGLRSGSAAEAQTVAKLCARLGI 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +H +++W KP TGL AAAREARY L++E A+ +I+T HT DDQ ETV MR RD Sbjct: 82 SHRILTWSGPKPSTGLPAAAREARYRLLAEAAQAEGIGMILTGHTADDQAETVLMRHARD 141 Query: 143 YAE-----KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + G GL+GM LYD +WI RP L RR +R L ++N+ W +DP+N D Sbjct: 142 AGQGHAGMAGRGLAGMAPATLYDWRIWIVRPLLGVRRAVLRDVLRRQNVGWADDPTNVDA 201 Query: 198 RFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 FER RVR + + + + + R ++ + LI + + +I + Sbjct: 202 AFERPRVRAALAGESVEHVKGMLMLAGQAALERRQLGASATDLIDGFASQPAIGLICLDP 261 Query: 255 DILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 +L+ D Y LR+ A GG LP E + L++G C ++ R V+D R Sbjct: 262 CLLSSGDEQAAIYALRILLATTGGIAFLPDEARSEALFGRLRAGFL-CATLSRTVVDSRR 320 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGP----QSYRKADVPSGI 368 + +++ R R LP +T+WDGR N S S + I P + R A Sbjct: 321 SGIFLRREARGLPAAAAATG-STLWDGRRHITLNDSSSALLIAPLGAAAAKRLATGEGKT 379 Query: 369 PPIIAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSI 410 P + + AL++ P+ +P++APF RF+ FDL +A A + Sbjct: 380 PSSLMRAALAAEPAVWQAGECLGLPGYGLKSATVEARPVVAPFGRFLPSFDLALARAVAG 439 Query: 411 SFGKVFIPRLPF 422 G +P LPF Sbjct: 440 LIGAAPVPPLPF 451 >gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099] gi|61216717|sp|Q98F87|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099] Length = 454 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 140/429 (32%), Positives = 203/429 (47%), Gaps = 32/429 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + AVSGGSDS LL+ L DR+ K A+++DH LR+ + E + V+ +C+ I Sbjct: 23 VAAVSGGSDSTALLLLLKHHF-DRTGSSAKLLAVTIDHGLRQGSAAEAQAVAKLCAERGI 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 AH ++W KP TGL AAAR+ARY L++E A+ LI+T HT DDQ ETV MR RD Sbjct: 82 AHRTLTWTGRKPSTGLPAAARDARYHLLAEAARAEGIGLIVTGHTADDQAETVLMRHARD 141 Query: 143 YA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G GL+GM LYD WI RP L RR +R FL + ++ W EDP+N D+ F Sbjct: 142 RELADLAGRGLAGMAPATLYDWREWIVRPLLGTRRSALRDFLRREHVGWAEDPTNIDEAF 201 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ER RVR + + ++ R ++ + A LI + + +I + + Sbjct: 202 ERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASAANLIRRIASQPSTGLIRLDPAL 261 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L D Y LR+ A GG LP + + LK+G C ++ R V+D R L Sbjct: 262 LIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRLKAGFL-CATLSRTVVDFRHAGL 320 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGPQSYRKADV----PSGIPPI 371 ++ R R LP + T+WDGR N + I P A P Sbjct: 321 FLRREARGLPPAATAVD-NTIWDGRRHITLNDMSGALLIAPLGAAAARRLAIDDGETPAS 379 Query: 372 IAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSISFG 413 + + AL++ P+ +P+++PF+RF+ FDL A A + G Sbjct: 380 LIRAALAAEPTLLQAFENLGLPQGEPRLPVFAARPVVSPFARFLPSFDLAPARAVAELIG 439 Query: 414 KVFIPRLPF 422 +P P Sbjct: 440 ASPLPASPL 448 >gi|260467069|ref|ZP_05813249.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075] gi|259029178|gb|EEW30474.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075] Length = 455 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 140/430 (32%), Positives = 211/430 (49%), Gaps = 33/430 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + AVSGGSDS L+ L DRS K A+++DH LR+ + E + V+ +C+ I Sbjct: 23 VAAVSGGSDSTA-LLLLLKHHLDRSAPSAKLLAVTIDHGLRQDSAAEAQAVAKLCAERGI 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 AH + W KP TGL AAAREARY L++ A+ LI+T HT DDQ ETV MR RD Sbjct: 82 AHRTMIWSGRKPSTGLPAAAREARYRLLASAARAEGIGLIVTGHTADDQAETVLMRHARD 141 Query: 143 YA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + +G GL+GM LYD WI RP L RR +R FL +++ W EDP+N+D+ F Sbjct: 142 GSLGHVQGRGLAGMAPATLYDWREWIVRPLLGTRRAALRDFLQSKHVGWAEDPTNSDESF 201 Query: 200 ERVRVRRFVRDIDLHAL---YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ER RVR + ++ + + + R ++ A LI ++ + ++ + + Sbjct: 202 ERPRVRAALAGDNVRRMDEALVLASQAAIERGQLGLDAADLIRRFASQPATGLVRLDPQL 261 Query: 257 LNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 + D Y LR+ A GG LP E + LK+G C ++ R V+D R Sbjct: 262 RSTGDERAAIYALRILLATVGGLAFLPDQARGEVLFGRLKAGFL-CATLSRTVVDFRRAG 320 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI----QIGPQSYRKADVPSG-IPP 370 +++ R R LP + T+WDGR S +G + ++ + +G P Sbjct: 321 IFLRREARGLPPAAAAID-NTIWDGRRHITLNDSSAGLLIAPLGAAAAKRLPIDAGETPA 379 Query: 371 IIAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSISF 412 + + AL++ P+ +P++APF+RF+ FDL A A + Sbjct: 380 SLMRAALAAEPTSRQAFENPDVPQGEPASPGFDARPVVAPFARFLPSFDLAPARAIAGLI 439 Query: 413 GKVFIPRLPF 422 G +P LPF Sbjct: 440 GAPSLPALPF 449 >gi|16272353|ref|NP_438566.1| cell cycle protein [Haemophilus influenzae Rd KW20] gi|260580533|ref|ZP_05848361.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Haemophilus influenzae RdAW] gi|1175240|sp|P44689|TILS_HAEIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1573375|gb|AAC22063.1| cell cycle protein (mesJ) [Haemophilus influenzae Rd KW20] gi|260092875|gb|EEW76810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Haemophilus influenzae RdAW] Length = 430 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 147/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353 >gi|145640364|ref|ZP_01795948.1| DNA mismatch repair protein [Haemophilus influenzae R3021] gi|145274950|gb|EDK14812.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21] Length = 430 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C +L+ Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQLQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353 >gi|301169106|emb|CBW28703.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae 10810] Length = 430 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 148/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + N++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKENLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353 >gi|145634599|ref|ZP_01790308.1| pyridoxine kinase [Haemophilus influenzae PittAA] gi|145268144|gb|EDK08139.1| pyridoxine kinase [Haemophilus influenzae PittAA] Length = 430 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R ++ ++ Q N+SW ED SN D+RF+R Sbjct: 137 GSGLQGLGAMQKEGQLF---GMSILRPLLSFTRNELEDYIQQENLSWVEDESNGDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D+L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDNLGNLTVQENEHNLI 353 >gi|229844434|ref|ZP_04464574.1| pyridoxine kinase [Haemophilus influenzae 6P18H1] gi|229812683|gb|EEP48372.1| pyridoxine kinase [Haemophilus influenzae 6P18H1] Length = 430 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + R + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAVAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G + + I RP L R + + + ++W D SN D+R++R Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPILRPLLGFTRPQLEDYAQKEKLNWITDESNGDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNKI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDDLGNLTIQENEHNLI 353 >gi|145628768|ref|ZP_01784568.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] gi|144979238|gb|EDJ88924.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21] Length = 397 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 147/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LVALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTTLLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ +L D+L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------SLPDNLGNLTVQENEHNLI 353 >gi|309750178|gb|ADO80162.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2866] Length = 430 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A+ V++ D+C +L+ Sbjct: 20 LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQLQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E++T+ +L D L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEKSTL--------SLPDDLGNLTVQENENNLI 353 >gi|145632651|ref|ZP_01788385.1| DNA mismatch repair protein [Haemophilus influenzae 3655] gi|144986846|gb|EDJ93398.1| DNA mismatch repair protein [Haemophilus influenzae 3655] Length = 430 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 148/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + R + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+G + + I RP L R + + + ++W D SN D+RF+R Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 L F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LLQFRQYPPAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D+L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDNLGNLTVQENEHNLI 353 >gi|260582332|ref|ZP_05850125.1| DNA mismatch repair protein [Haemophilus influenzae NT127] gi|260094700|gb|EEW78595.1| DNA mismatch repair protein [Haemophilus influenzae NT127] Length = 430 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L + A + ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADNWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + Q ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQQEKLNWITDESNKDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353 >gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford] gi|166988063|sp|A8GLX9|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford] Length = 430 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 40/427 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I VAVSGGSDS+ LL L ++ ++++ I+ S ISVDH LRE +K E YV ++ + Sbjct: 20 SKIAVAVSGGSDSVALLY-LANIWAEKN--NIELSVISVDHNLREQSKQETYYVQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L AR RY L++ + +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRRFV--------RDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 R +R+ + +I L L L K +L + AV + + + + Sbjct: 193 RRNIIRQKLAKGAGYIKAEIILQQLKINDLLDNKFKPELISAIAEAVKIFEYGFAFLDLV 252 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 S + + ++ I GQ + S+E ++ + ++ Sbjct: 253 KFDKFS-------NEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGC 305 Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 V+ R N L I R + LP + +++ +WD R+ ++ + +Y + Sbjct: 306 VVKRIQNELLIYREFGKKLPESKILLDKSIIWDNRFCITKNQENPDCVI--TYLSLEDYK 363 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416 I + L + K L P + + K +D + F +SF F Sbjct: 364 TIKKQLDLAHLKDLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-QNFEVSFAPNF 422 Query: 417 IPRLPFF 423 + R F Sbjct: 423 VSRFTHF 429 >gi|319899362|ref|YP_004159459.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella clarridgeiae 73] gi|319403330|emb|CBI76889.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella clarridgeiae 73] Length = 481 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 122/462 (26%), Positives = 191/462 (41%), Gaps = 71/462 (15%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++AVSGGSDS+ LL + L + +++DH LRE + E V+ +C Sbjct: 20 KLILAVSGGSDSLALLFLVQEHLKILPIAP-EVIVVTIDHQLREESAHEAESVAKICHAY 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I H +V W+ KP+T + AR ARY L+ + A+ ATLIMT HT +DQ ET MR Q Sbjct: 79 QIKHIIVRWEGKKPETKISEKARIARYDLLFKEAQKHGATLIMTGHTLNDQAETYQMRVQ 138 Query: 141 RD-------------------YAEKG----------------------MGLSGMCDTILY 159 R +E G GLS + L Sbjct: 139 RSQKKTEGAQSETLEKSLKERSSENGITEILKENDQEISIKKAEEGYERGLSCIPREALL 198 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + + RP L RR+ +R++L + +W +DP+N D RFERVRVR F+R +L + K Sbjct: 199 HGQVRLIRPLLGVRRQTLRAYLSFQGSTWIDDPTNEDLRFERVRVRHFLRQKNLSEIAKK 258 Query: 220 MKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 + K R VA LI H R I L+ F ++ + + GG Sbjct: 259 VNKAALKRRMQAQKVADLILALDIAVEHGRCFIGKPPVFLHQHHAFPF-VVGLFVVLMGG 317 Query: 278 QISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 L + + + L L+ ++ ++ VI+ + + R R++ I+ P ET Sbjct: 318 SSYLLSSQKLVALNQKLCLQEPEKKRFTLAGAVIETSKKGIAMWRETRHIQEAIIAPGET 377 Query: 336 TVWDGRYQFQNLSDSLIQIGP-----------QSYRKADVPSGI----------PPIIAQ 374 VWD RYQ N I++ P Q + + P + Sbjct: 378 FVWDRRYQISNYDTKAIRVRPADLTHLKNYLDQGKGEVETPHFPSLQSLVMISNEKGVDI 437 Query: 375 RALSSMPSKEGG---KPLLAPFSRFMTKFDLPVAYAFSISFG 413 L+ + K ++APF+ + + D +A F Sbjct: 438 PELTHHFCYQRNIIMKRIMAPFNWLLPREDAAIANVVGSFFN 479 >gi|145638685|ref|ZP_01794294.1| pyridoxine kinase [Haemophilus influenzae PittII] gi|145272280|gb|EDK12188.1| pyridoxine kinase [Haemophilus influenzae PittII] Length = 430 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L + A ++ D+C +L+ Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADCWAKHCQDLCDQLQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ +L D+L + Q + Sbjct: 307 RRYQDSLYLTKRFSDLTKYCLKLEQNTL--------SLPDNLGNLTVQENEHNLI 353 >gi|329122279|ref|ZP_08250867.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116] gi|327473840|gb|EGF19257.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116] Length = 430 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + R + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ +L D L + Q + + Sbjct: 307 RRYQDSLYLTKRFSDLTKYCLKLEQNTL--------SLPDDLGNLTVQENEQNLI 353 >gi|145630423|ref|ZP_01786204.1| pyridoxine kinase [Haemophilus influenzae R3021] gi|144984158|gb|EDJ91595.1| pyridoxine kinase [Haemophilus influenzae R3021] Length = 430 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 148/349 (42%), Gaps = 34/349 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + + AI + H L A ++ D+C +L+ Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLQPLSIRAIHIHHGLSPNADSWAKHCQDLCDQLQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I ++ +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + +I Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKII 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 R + L++T+ +L L E+ T+ +L D L + Q Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL--------SLPDDLGNLTVQE 347 >gi|68249007|ref|YP_248119.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP] gi|81336582|sp|Q4QND8|TILS_HAEI8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|68057206|gb|AAX87459.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP] Length = 430 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 142/346 (41%), Gaps = 34/346 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ ++C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQNLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H + +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + + I RP L R + + Q ++W D SN D+R++R Sbjct: 137 GSGLQGLSAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + I I N Sbjct: 194 NFLRNEI----LPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 L F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LLQFRQYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 R + L++T+ +L L E+ + NL D L + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNML--------NLPDDLGNLT 344 >gi|309972437|gb|ADO95638.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2846] Length = 430 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A+ V++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+R++R Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ + +L D+L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNML--------SLPDNLGNLTVQENEHNLI 353 >gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101] gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101] Length = 419 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 105/424 (24%), Positives = 173/424 (40%), Gaps = 28/424 (6%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 ++ R L+ P I VAVSGGSDS+ LL LH S +VDH LR Sbjct: 3 VDPARLLADGLLPDPPKTIGVAVSGGSDSLALLHLLHDFAVTHS---CTLHVATVDHGLR 59 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A E V+D C L + H V+ W+ L AR+ARY L+++ + +I Sbjct: 60 REAGAEAAMVADTCRSLGLDHEVLHWQGWDRSGNLQNEARKARYQLLADWGRRRQLDVIA 119 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ET MR R G LS M D + WI RP L RR ++++L Sbjct: 120 LGHTADDQAETFLMRLARRAGVDG--LSAMPDRFEREGMTWI-RPLLGARRAALQAYLES 176 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 I W +DPSN D R++RVR+R + ++ AL + + + +N+ + Sbjct: 177 NGIQWADDPSNEDTRYDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALNHQMQQTA 236 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 Y+++H ++ + + L+ + G P ++ VM L + Sbjct: 237 RAYVSLHAGAVAIDVAGLNAQPFEIRRRLIAHALKWVNGAYYAPRSAALGDVMAALATA- 295 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD--------S 350 ++ + R LW+ R +R + + + +WDGR++ + + Sbjct: 296 -PSATLQGCELRHRVGKLWVFRELRVVSRMTCDIRD--LWDGRWRIAPPAQFSADTGDLT 352 Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFS 409 + +G + P + + L S P+ G L+ AP + + + Sbjct: 353 VGALGADGLK--LCPDWRDLGLPRGVLLSSPAVWQGARLVAAPLAGTSQNWQAVLERGKD 410 Query: 410 ISFG 413 F Sbjct: 411 TFFA 414 >gi|319898074|ref|YP_004136271.1| tRNA(ile)-lysidine synthetase [Haemophilus influenzae F3031] gi|317433580|emb|CBY81964.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3031] Length = 430 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 145/355 (40%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H + +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + + ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAIQQQSELF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNKI----LPKLRERWAYF-DLSVQRSTQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ +L D L + Q + Sbjct: 307 RRYQDCLYLTKRFSDLTKCTLKLEQNTL--------SLPDDLGNLSVQENEHNLI 353 >gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2] gi|75537001|sp|Q4UN67|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2] Length = 430 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 99/427 (23%), Positives = 185/427 (43%), Gaps = 40/427 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I AVSGGSDS+ LL L ++ ++++ I+ S ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKIAAAVSGGSDSVALLY-LANIWAEKN--NIELSVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRRFV--------RDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 R +R+ + DI L L L K +L + AV + + + + Sbjct: 193 RRNIIRQKLAKGEDYIKADIILQQLKINDLLDNKFKPELISAIAEAVKIFEYGFAFLDLV 252 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 S + + ++ I GQ + S+E ++ + ++ Sbjct: 253 KFDKFS-------NEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGC 305 Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 VI+R N L I R + LP + +++ +WD R++ ++ ++ + Sbjct: 306 VINRIQNELLIYREFGKKLPESKILLDKSVIWDNRFRITRNQETPNCF--VTHLSLEDYK 363 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416 I + L ++ K + P + + K +D + + F +SF F Sbjct: 364 MIKKQLDLEPLKNLSCKNHNAIIFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNF 422 Query: 417 IPRLPFF 423 + R F Sbjct: 423 VSRFTHF 429 >gi|49474667|ref|YP_032709.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse] gi|61216506|sp|Q6FYQ5|TILS_BARQU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49240171|emb|CAF26635.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse] Length = 476 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 174/385 (45%), Gaps = 39/385 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + +++AVSGGSDS+ LL + L S + ++VDH LR + E V+ Sbjct: 14 DFIQCRKVILAVSGGSDSLALLFLVKDHLKTFSIPT-EIIVVTVDHQLRRESACEAESVA 72 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C I H +V W+ KP+T ++++AR RY L+ + A+ ATLIMT HT +DQ+ET Sbjct: 73 EICRAHHIQHVIVRWEGKKPKTHIISSARTVRYNLLFKEAQKQGATLIMTGHTLNDQVET 132 Query: 135 VYMRSQRDYAEK---------------------------------GMGLSGMCDTILYDL 161 MR QR GLS + L + Sbjct: 133 YQMRCQRLQKSADVLQREAFEDMRDGVCSTETRANIAEKSYGLMYERGLSCIPREALLNQ 192 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 + + RP L +R+ +R++L + +W +DP+N + FERVRVR+ + + K+ Sbjct: 193 TVRLIRPLLGVKRKTLRAYLRLKGKTWIDDPTNENPNFERVRVRQSLHPKKFAGIAQKVH 252 Query: 222 KFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 + R K VA LI H R IA L S F + + + GG Sbjct: 253 EATLQRRKQAQNVANLILALDVSVEHGRCFIAKPVSFLQQHSGFPFVVGLFAVLMGGGFY 312 Query: 280 SLPGYRSMERVM--LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 LP + + ++ L L S ++ ++ VI+ + L R RN+ + P +T + Sbjct: 313 LLPT-KKLNTLVSKLCLHSLEKRRFTLAGSVIESNRSGLAFWRESRNIKEGAVEPGKTFL 371 Query: 338 WDGRYQFQNLSDSLIQIGPQSYRKA 362 WDGRYQ N D I++G ++ Sbjct: 372 WDGRYQITNRGDETIKVGAAGLQQL 396 >gi|319775667|ref|YP_004138155.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047] gi|317450258|emb|CBY86474.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047] Length = 433 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 146/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ ++C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHALSPNADCWAQHCQNLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H + +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + Q ++W +D SN D+RF+R Sbjct: 137 GSGLQGLGAMQHQSVLF---GMPIFRPLLGFTRLQLEDYAQQEKLNWVKDESNEDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ NL D L + Q + Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353 >gi|148825315|ref|YP_001290068.1| pyridoxine kinase [Haemophilus influenzae PittEE] gi|226695539|sp|A5UA84|TILS_HAEIE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148715475|gb|ABQ97685.1| pyridoxine kinase [Haemophilus influenzae PittEE] Length = 430 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 140/328 (42%), Gaps = 26/328 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EILVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + ++ + ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNGDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL 334 >gi|148827606|ref|YP_001292359.1| cell cycle protein [Haemophilus influenzae PittGG] gi|226695540|sp|A5UGS0|TILS_HAEIG RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148718848|gb|ABQ99975.1| cell cycle protein [Haemophilus influenzae PittGG] Length = 430 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 140/328 (42%), Gaps = 26/328 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + +I AI + H L A ++ D+C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLCQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + + ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + +I Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKII 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV 337 R + L++T+ +L L E+ T+ Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL 334 >gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389] gi|166988064|sp|A8GY99|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389] Length = 430 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 97/424 (22%), Positives = 180/424 (42%), Gaps = 34/424 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ +SVDH LR+ +K E+ Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALLY-LANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + + L AR+ RY L++ + ++ +++TAH DD +E +R Sbjct: 77 LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ S ++ + N I RP + ++ ++L NI W ED SN ++ Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R+ + +Y+K ++KVN + L + + IS+ Sbjct: 193 RRNTIRQKLAK---EEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248 Query: 260 DSTLLF---------YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + F L+ I GQ + S+E ++ ++ ++ VI Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R N L I R + LP L ++ VWD R++ D I+ +Y + I Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFRITKNHD--IENCVATYLSLEDYKIIK 366 Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419 + L ++ L P + + K +D + +F++SF F R Sbjct: 367 EKLDLEVLKNLSCGNHNAILFTLPIVKILEKVVAIPHISYYDNDI-KSFNVSFAPDFTSR 425 Query: 420 LPFF 423 F Sbjct: 426 FTHF 429 >gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C] gi|122425129|sp|Q1RGN9|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C] Length = 430 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 180/424 (42%), Gaps = 34/424 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ +SVDH LR+ +K E+ Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALLY-LANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + + L AR+ RY L++ + ++ +++TAH DD +E +R Sbjct: 77 LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ S ++ + N I RP + ++ ++L NI W ED SN ++ Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R +R+ + +Y+K ++KVN + L + + IS+ Sbjct: 193 RRNTIRQKLAK---EEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248 Query: 260 DSTLLF---------YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + F L+ I GQ + S+E ++ ++ ++ VI Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R N L I R + LP L ++ VWD R++ + I+ +Y + I Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFRITK--NHNIENCVATYLSLEDYKIIK 366 Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419 + L ++ L P + + K +D + +F++SF F R Sbjct: 367 EKLDLEVLKNLSCGNHNAILFTLPIVKILEKVVAIPHISYYDNDI-KSFNVSFAPDFTSR 425 Query: 420 LPFF 423 F Sbjct: 426 FTHF 429 >gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43] gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43] Length = 444 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 129/417 (30%), Positives = 193/417 (46%), Gaps = 12/417 (2%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F +++ + VAVSGGSDS+GLL+ + RS + A++VDH LR + DE R Sbjct: 23 FSKTITDRRPLGVAVSGGSDSLGLLLGMA-----RSVPPKQLVALTVDHGLRSGSADEAR 77 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V +C RL + H + WK KP +GL A AREARY L+S+ A + I+T HT DDQ Sbjct: 78 TVKRICRRLGVRHETLLWKGEKPVSGLQAKAREARYHLLSDAASRLGLAAILTGHTSDDQ 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ MR R + GL G+ L+D W+ RP L R IR +L + W ED Sbjct: 138 AETLTMRRTRGLRDDAPGLIGIPQASLFDGRSWVLRPLLGVDRASIRRYLAMAGVGWIED 197 Query: 192 PSNTDDRFERVRVRRFVRDIDL-HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 PSN D RFERVRVR+ + + + + RV++ A + + V Sbjct: 198 PSNLDVRFERVRVRKGLEAQAMVSKSSDEASRAIASRVRIALEAAAFVDQACGVQRDGTW 257 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI 309 ++ D + L +CGG R + F+ + G +++GR +I Sbjct: 258 RVALDGRGAGEVEI-AALEALIRVCGGAARPLDRRGKLALHGFVSGRQAGSALAVGRTLI 316 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS-DSLIQIGPQSYRKADVPSGI 368 R + R R L L++ P ++ WD R++ NL S +++ A Sbjct: 317 KRDVAGFVLMRERRGLEELVIAPGQSGDWDRRFRITNLDRHSDLRVVADHTATAMPLFSR 376 Query: 369 PPIIAQRALSSMPSKEGG---KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422 R+ S GG K L+ FSR + ++LP+A A + G P P+ Sbjct: 377 DFKAGSRSWSPAGGICGGFLVKRLVGGFSRVLPVYELPLAQALARLTGGAAFPACPW 433 >gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake] gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake] Length = 433 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 19/379 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VAVSGG DSM LL S + ++V+H LR+ AK E +V L + Sbjct: 20 AVAVSGGIDSMVLLHL-----SAQHRNHNTPIILTVNHGLRQEAKQEALFVFQHSQNLNL 74 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++W P++ + ++AR+ RY L+ + +M AH +DQ ET+ +R +R Sbjct: 75 KCHILNWHGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQAETIMIRLERG 134 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G L+GM + Y + I RP L R ++ + Q NI W DPSN + +++R Sbjct: 135 SGLDG--LAGMQE-CTYLNGICILRPLLSVSRTELLQYASQNNIPWINDPSNNNKKYKRT 191 Query: 203 RVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256 R + D LY + + + V I + L I I D Sbjct: 192 LYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVREAIDECLEFTNLGYINIKLDVF 251 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGRVVIDRRAN 314 LN+ + LL S G Q P Y+ + ++ +++ + ++ + N Sbjct: 252 LNLPEEISLRLLTYSIMTIGQQKYKPRYKKINKIFYKIQNNELNSAQTLCSCKIVKNQNN 311 Query: 315 FLWITRAVRNLPTLIL--YPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPII 372 + I R V + LI+ + +WD R++ + S +++P + + Sbjct: 312 TISIIREVSTIKELIVNYPTNTSIIWDNRFKISIAHHDANSLIICSLNDSNIPDDLKK-L 370 Query: 373 AQRALSSMPSKEGGKPLLA 391 + A+ +P + ++A Sbjct: 371 NREAVRCLPVLKHQNKIVA 389 >gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas] gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas] Length = 434 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 19/382 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGG DSM LL + + ++V+H LR A E +V Sbjct: 17 DNFAIAVSGGIDSMTLLHLSARYCNKNTP-----IVLTVNHGLRPEAAQEALFVFQHSQN 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + +++W P++ + ++AR RY L+ + +M AH +DQ ET+ +R Sbjct: 72 LNLKCHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIRL 131 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G L+GM + Y + I RP L R ++ + + NI+W D SN + ++ Sbjct: 132 ERGSGLDG--LAGMQE-YTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKY 188 Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +R R + ++ ++ LY + + + + V + + L I I Sbjct: 189 KRTLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKL 248 Query: 255 DI-LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI-DR 311 DI L + + LL S G Q P Y + + +K+ K ++ I Sbjct: 249 DIFLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTN 308 Query: 312 RANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 N + ITR V + L + V WD R++ ++ + + S +P + Sbjct: 309 HNNIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELK 368 Query: 370 PIIAQRALSSMPSKEGGKPLLA 391 + + A+ +P + ++A Sbjct: 369 K-LHREAVRCLPILKHKNKIVA 389 >gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa] gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa] Length = 442 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 19/382 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGG DSM LL + + ++V+H LR A E +V Sbjct: 25 DNFAIAVSGGIDSMTLLHLSARYCNKNTP-----IVLTVNHGLRPEAAQEALFVFQHSQN 79 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + +++W P++ + ++AR RY L+ + +M AH +DQ ET+ +R Sbjct: 80 LNLKCHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIRL 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G L+GM + Y + I RP L R ++ + + NI+W D SN + ++ Sbjct: 140 ERGSGLDG--LAGMQE-YTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKY 196 Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +R R + ++ ++ LY + + + + V + + L I I Sbjct: 197 KRTLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKL 256 Query: 255 DI-LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI-DR 311 DI L + + LL S G Q P Y + + +K+ K ++ I Sbjct: 257 DIFLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTN 316 Query: 312 RANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 N + ITR V + L + V WD R++ ++ + + S +P + Sbjct: 317 HNNIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELK 376 Query: 370 PIIAQRALSSMPSKEGGKPLLA 391 + + A+ +P + ++A Sbjct: 377 K-LHREAVRCLPILKHKNKIVA 397 >gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597] gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597] Length = 414 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 102/413 (24%), Positives = 168/413 (40%), Gaps = 22/413 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M P +V F + VAVSGGSDS+ LL LH S + A++VDH Sbjct: 1 MSGDPARAVAGFFDP-PPAGPLGVAVSGGSDSLALLHLLHDWASG---SGLALHAVTVDH 56 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V ++ RL + H+V+ W L AR ARY L++E A+ Sbjct: 57 GLRADSAAEAACVGEIAGRLGVPHTVLHWTGWDGAGNLSDRARRARYDLMAEWARGAGVA 116 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I HT DDQ ET+ MR R G+ + RP L RR ++R + Sbjct: 117 GIALGHTADDQAETLLMRLARGSGVAGLAAM---SPGRSHAGVTFLRPLLTVRRAELRRY 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVA 235 L R+ W EDP+N D RF+R + RR +R+++ + AL + LR + + Sbjct: 174 LDARDQKWIEDPTNEDMRFDRPKARRALRELEPLGLTVEALNMVAGNMAALRKTLGHYAE 233 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 ++ ++ + +L+ + G+ P ++R++ + Sbjct: 234 AEARAHVQFEAGDVLIPCAAFGAMPGETARLILQAALHWVSGEEYPPRRGGIQRLVEAIA 293 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSDSLI 352 G+ + + +I R + + I+R + + P T+WDGR++ D + Sbjct: 294 RGEG--MPLSGCLIAIRDDTIRISREPAAVAETVAAPG--TLWDGRWRLTGPFRPGDRIA 349 Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPV 404 G R + +R L + P+ G AP + F F + Sbjct: 350 ATGEAGLRACT--EWRGTGLPRRTLLAAPAVWRDGALRAAPLAGFGAGFSAEL 400 >gi|319406243|emb|CBI79880.1| tRNA(Ile)-lysidine synthase [Bartonella sp. AR 15-3] Length = 485 Score = 276 bits (707), Expect = 4e-72, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 166/386 (43%), Gaps = 51/386 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++ VSGGSDS+ LL + L + +++DH LRE + E V+ +C Sbjct: 20 KLILGVSGGSDSLALLFLVKEHLKTLPIAP-EVIVVTIDHQLREESAYEAENVAKICYAF 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I H +V W+ KPQT + AR ARY L+ + A+ ATLIMT HT +DQ ET MR Q Sbjct: 79 QIKHIIVRWEGKKPQTKISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQ 138 Query: 141 RDYAEKGM---------------------------------------------GLSGMCD 155 R + GLS M Sbjct: 139 RSQKKTEAARHETSEMPWKDREKDKAPANEEMEISKENSHKRLVQKDEERYERGLSCMPR 198 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 L + + RP L RR+ +R++L R +W +DP+N D +FERVRVR F+ L Sbjct: 199 EALLYGKVRLIRPLLGVRRKTLRAYLSLRGSTWIDDPTNEDLKFERVRVRHFLHQKKLTE 258 Query: 216 LYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + K+ K RV+ +++ +TV + I L F ++ + Sbjct: 259 IAQKVHKATVQRRVQAQKVADLILALDITVEYGHCFIGKPPSFLQQHHAFPF-VVGLFIV 317 Query: 274 ICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331 + GG L + + + L L ++ ++ VI+ L I R R++ + Sbjct: 318 LMGGSSYLLSSQKLAALDQKLCLHDLEKKRFTLAGAVIEYSRKGLAIWREARHIQKATIA 377 Query: 332 PEETTVWDGRYQFQNLSDSLIQIGPQ 357 P ET +WD RYQ N + I +GP Sbjct: 378 PGETFIWDQRYQIINHDTTAICVGPA 403 >gi|229846491|ref|ZP_04466599.1| cell cycle protein [Haemophilus influenzae 7P49H1] gi|229810584|gb|EEP46302.1| cell cycle protein [Haemophilus influenzae 7P49H1] Length = 430 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 34/355 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + + AI + H L A V++ ++C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHALSPNADCWVQHCQNLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-ANGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + Q ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 F LLR+ A Q+ +P R + +++ +F K + VI Sbjct: 249 LYQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 R + L++T+ +L L E+ T+ +L D L + Q + Sbjct: 307 RRYQDCLYLTKRFSDLTKCTLKLEQNTL--------SLPDDLGNLTIQENEHNLI 353 >gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str. Welgevonden] gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str. Welgevonden] gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Welgevonden] Length = 442 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 21/387 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL L ++ + + I ++V+H LR A E +V L + Sbjct: 27 AIAVSGGIDSMVLLH-LSAICNTKFTPTI----LTVNHGLRSEAAQEALFVYQHSQNLNL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++W KPQ+ + ++AR+ RY+L+ + +M AH +DQ ET+ MR +R Sbjct: 82 KCHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQKNDQAETIMMRLERG 141 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G L+GM + Y + I RP L RE++ + +NI+W D SN + +++R Sbjct: 142 SGLDG--LAGMQE-CTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKRT 198 Query: 203 RVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256 R ++++D ++ LY + + + V + I ++L + I I + Sbjct: 199 LYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNNLGFIKIKLNTF 258 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-SGKRGCVSIGRVVIDRRA-- 313 N+ + L S G + P Y + + ++ + + I R Sbjct: 259 FNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITRNQKD 318 Query: 314 NFLWITRAVRNLPTLILYP--EETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 N L ITR V + + P + + VWD R++ + + + I S +P + Sbjct: 319 NTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPENLKK- 377 Query: 372 IAQRALSSMPSKEGGKPLLA-PFSRFM 397 + + A+ +P + +LA P + Sbjct: 378 LDREAVRCLPILKYQNKILAYPLQNHL 404 >gi|32034944|ref|ZP_00135035.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209005|ref|YP_001054230.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae L20] gi|303250988|ref|ZP_07337176.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253197|ref|ZP_07535073.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|226695530|sp|A3N2I9|TILS_ACTP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|126097797|gb|ABN74625.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302650145|gb|EFL80313.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859341|gb|EFM91378.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 419 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 174/421 (41%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ GKP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str. Gardel] gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] Length = 442 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 21/387 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +AVSGG DSM LL L ++ + + I ++V+H LR A E +V L + Sbjct: 27 AIAVSGGIDSMVLLH-LSAICNTKFTPTI----LTVNHGLRSEAAQEALFVYQHSQNLNL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++W KPQ+ + ++AR+ RY+L+ + +M AH +DQ ET+ MR +R Sbjct: 82 KCHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQKNDQAETIMMRLERG 141 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G L+GM + Y + I RP L RE++ + +NI+W D SN + +++R Sbjct: 142 SGLDG--LAGMQE-CTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKRT 198 Query: 203 RVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256 R ++++D ++ LY + + + V + I ++L + I I + Sbjct: 199 LYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNNLGFIKIKLNTF 258 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-SGKRGCVSIGRVVIDRRA-- 313 N+ + L S G + P Y + + ++ + + I R Sbjct: 259 FNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITRNQKD 318 Query: 314 NFLWITRAVRNLPTLILYP--EETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 N L ITR V + + P + + VWD R++ + + + I S +P + Sbjct: 319 NTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPENLKK- 377 Query: 372 IAQRALSSMPSKEGGKPLLA-PFSRFM 397 + + A+ +P + +LA P + Sbjct: 378 LDREAVRCLPILKYQNKILAYPLQNHL 404 >gi|307246460|ref|ZP_07528533.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255443|ref|ZP_07537250.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259895|ref|ZP_07541609.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852664|gb|EFM84896.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861627|gb|EFM93614.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866065|gb|EFM97939.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 419 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 173/421 (41%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYTDVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ GKP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|307257612|ref|ZP_07539372.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863915|gb|EFM95838.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 419 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 174/421 (41%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + VC RL+I + + + G+ A AR ARY I E ++ Sbjct: 52 GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQSN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + + DG + Sbjct: 280 QQTIYTDVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLALPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ GKP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11] gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11] Length = 417 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 165/410 (40%), Gaps = 20/410 (4%) Query: 7 ESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++R +R+ + P + VAVSGGSDS L+ L + +I A +VDH LR Sbjct: 6 DTLRAEIRARLPDPLPRRLGVAVSGGSDSTALMRLLADIAQR---EQIALFAATVDHGLR 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A E V+++ I H + W+ L AR ARY L++ A+ I Sbjct: 63 ADAASEAATVANLAHNWGIPHETLKWRGWDGTGNLQDHARRARYRLLTGWAQANGLGAIA 122 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ET+ MR R GLS M L + RP L R +R +L Sbjct: 123 LGHTADDQAETLLMRLARAAGV--SGLSAMAGMRREGETL-LLRPMLAVTRARLRDYLTA 179 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLI 238 + I+W +DPSN D RF+R++ R+ + + +L + R + Sbjct: 180 QGIAWIDDPSNQDLRFDRIKTRQALSGLTQIGITAESLSRVAENLAQAREALAQYAQESA 239 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + V + + + + L+ + G P + ++++ + L +G+ Sbjct: 240 AGVMRVMDGDLCVDPEGFAALPEEIRRRLVVAAILWVAGGAYPPRHGAVDQALNALSAGQ 299 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 +++G ++ R WI+R + + P E WDGR+ + +I Sbjct: 300 --RMTVGGCILSFRGKKTWISRELNAVSHKTANPGEP--WDGRWIVTGPTGPDAEIRALG 355 Query: 359 YRKADVPSGIPPII-AQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAY 406 + + AL S P+ G LL AP + F + + Sbjct: 356 DAGILQLEDWRSVAKPRTALLSTPAVWAGDTLLAAPLAGFAQGWRAEMVS 405 >gi|307250818|ref|ZP_07532747.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857177|gb|EFM89304.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 419 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 39/420 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ GKP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVP 398 >gi|42521051|ref|NP_966966.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|61217299|sp|Q73FR9|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 431 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 85/389 (21%), Positives = 147/389 (37%), Gaps = 17/389 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S Y + VAVSGG DS+ LL + + A++V+H LR ++ E +V Sbjct: 14 SAFYNNQVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--IALTVNHGLRPESQKEADFVV 71 Query: 75 DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L +++W+ + + AR+ARY L++E K N ++ AH DDQ E Sbjct: 72 SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T +R +R G+ D + + I RP L R +I + + W ED S Sbjct: 132 TFLLRLERGSGVDGLSSM---DYKSFLNGIDIFRPLLNFSRSEIEKYAKLHRLKWIEDRS 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 N D ++ R R ++ D + L + + + + + VH Sbjct: 189 NHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 248 Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGR 306 I I + + + LL S + P Y S+ + L+ ++ Sbjct: 249 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSG 308 Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-AD 363 I + + I R + + L E T WD R+ L + + +K Sbjct: 309 CKIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRFSCTILGNQGCSVIIAPLKKTQK 368 Query: 364 VPSGIPPIIAQRAL-SSMPSKEGGKPLLA 391 VP + + S+P+ + +LA Sbjct: 369 VPEFLKDYNCCPEVFYSLPTVQKDSKVLA 397 >gi|307248585|ref|ZP_07530600.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854935|gb|EFM87123.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 413 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 172/421 (40%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ KP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|331661562|ref|ZP_08362486.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA143] gi|331061477|gb|EGI33440.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA143] Length = 432 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L C R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLACTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVS------WQTWLQPLELPAGLGSVQLIAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|74310809|ref|YP_309228.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei Ss046] gi|73854286|gb|AAZ86993.1| cell cycle protein [Shigella sonnei Ss046] Length = 432 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|26246135|ref|NP_752174.1| tRNA(Ile)-lysidine synthetase [Escherichia coli CFT073] gi|227884899|ref|ZP_04002704.1| PP-loop superfamily ATPase [Escherichia coli 83972] gi|300993591|ref|ZP_07180447.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1] gi|301049898|ref|ZP_07196824.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1] gi|61216659|sp|Q8FL00|TILS_ECOL6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|26106532|gb|AAN78718.1|AE016755_218 Putative cell cycle protein mesJ [Escherichia coli CFT073] gi|227838037|gb|EEJ48503.1| PP-loop superfamily ATPase [Escherichia coli 83972] gi|300298351|gb|EFJ54736.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1] gi|300406514|gb|EFJ90052.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1] gi|307552038|gb|ADN44813.1| tRNA(Ile)-lysidine synthase [Escherichia coli ABU 83972] Length = 437 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V IL W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETILP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|165976971|ref|YP_001652564.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150871|ref|YP_001969396.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264222|ref|ZP_07545813.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|226695531|sp|B3GYM3|TILS_ACTP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695532|sp|B0BRD5|TILS_ACTPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|165877072|gb|ABY70120.1| probable cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189916002|gb|ACE62254.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870468|gb|EFN02221.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 419 Score = 272 bits (697), Expect = 6e-71, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 173/421 (41%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ KP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|315294592|gb|EFU53939.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 153-1] Length = 437 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V IL W Q L + ++ + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETILP------WQTWLQPLELPAGVGRVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str. McKiel] gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str. McKiel] Length = 432 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 99/427 (23%), Positives = 175/427 (40%), Gaps = 40/427 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I VAVSGGSDS+ LL + I+ ISVDH LRE +K E Y+ ++ + Sbjct: 22 SRIAVAVSGGSDSVALLYLTNVWAKK---NNIELFVISVDHNLREQSKQETHYIQNISNS 78 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ ++TAH DD +E +R Sbjct: 79 LNRKHYNLSFDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRL 138 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN D++ Sbjct: 139 ERNSGIFGLSSSNIN----WHNNIQIIRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKY 194 Query: 200 ERVRVRRFV--------RDIDLHALYLKM----KKFQDLRVKVNNAVAMLIPKYLTVHMR 247 +R VR+ + DI L L + K +L + AV + + + + Sbjct: 195 KRNLVRQKLAKEEDYIKADIILQQLKINNLLDDKFKPELISAIAEAVKIFEYGFAFLDLV 254 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 S + + L+ I GQ + + S+ ++ + ++ Sbjct: 255 KFDKFS-------NEVKVQLINFLLIIISGQSRVARFYSVSPILELITQDINFKNTLHGC 307 Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 VI R N L I R + LP + +++ +WD R+ ++ ++ + Sbjct: 308 VIKRIQNELLIYREFGKKLPKSQILLDKSIIWDSRFHIIKNQETPNCF--VTHLSLEDYK 365 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416 I + L ++ K L P + + K +D + F +SF F Sbjct: 366 TIKKQLDLEPLKNLSCKNHNAILFTLPVVKILEKVIAIPHISYYDHDM-RNFGVSFAPNF 424 Query: 417 IPRLPFF 423 + R F Sbjct: 425 VSRFTHF 431 >gi|303253037|ref|ZP_07339189.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307262025|ref|ZP_07543680.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302648101|gb|EFL78305.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306868308|gb|EFN00130.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 419 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 172/421 (40%), Gaps = 39/421 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F + ++ +SGG DS+ +L + ++ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ +W ED SN D ++R +R V L + + + F + + A ML Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + L ++ S+ LNI++ F L+R+ CG Q +P + +++ Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344 ++ K + + + R + L++T + P P + T+ DG + Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403 Q+L DS+I + +P + Q L+ K+ KP+ + + +P Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398 Query: 404 V 404 V Sbjct: 399 V 399 >gi|218703442|ref|YP_002410961.1| tRNA (Ile)-lysidine synthetase [Escherichia coli UMN026] gi|293403257|ref|ZP_06647354.1| tilS [Escherichia coli FVEC1412] gi|298378793|ref|ZP_06988677.1| tilS [Escherichia coli FVEC1302] gi|300900770|ref|ZP_07118916.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1] gi|218430539|emb|CAR11405.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UMN026] gi|284919963|emb|CBG33018.1| tRNA(Ile)-lysidine synthase [Escherichia coli 042] gi|291430172|gb|EFF03186.1| tilS [Escherichia coli FVEC1412] gi|298281127|gb|EFI22628.1| tilS [Escherichia coli FVEC1302] gi|300355755|gb|EFJ71625.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1] Length = 431 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + I Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDIAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|324008219|gb|EGB77438.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 57-2] Length = 432 Score = 272 bits (696), Expect = 8e-71, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTPLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|301025926|ref|ZP_07189412.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1] gi|300395781|gb|EFJ79319.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1] Length = 432 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F D + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFADATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|319407718|emb|CBI81366.1| tRNA(Ile)-lysidine synthase [Bartonella sp. 1-1C] Length = 487 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 166/402 (41%), Gaps = 51/402 (12%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F + +++ VSGG DS+ LL + L + +++DH LRE Sbjct: 4 KLAKNLFKKTDFAHCQKLILGVSGGGDSLALLFLVKEHLKTMPLAP-EVIVVTIDHQLRE 62 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + E V+ +C L+I H +V W+ KP+T + AR ARY L+ + A+ A LIMT Sbjct: 63 ESAYEAESVAKICHALQIKHIIVRWEGKKPKTQISEKARIARYDLLFKEAQKQGAALIMT 122 Query: 125 AHTFDDQLETVYMRSQRDYA---------------------------------------- 144 HT +DQ ET MR QR Sbjct: 123 GHTLNDQAETYQMRVQRSQKKTDSAQQEIPEALSKERRQERESANEEMQILKEESQKRST 182 Query: 145 -----EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 GLS M L + + RP L RR+ +R++L + W +DP+N D +F Sbjct: 183 EKDEERYERGLSCMPREALLYGKVRLIRPLLGVRRKTLRAYLFLQGSKWIDDPTNEDLKF 242 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL 257 ERVRVR + L + K+ K RV+ +++ +TV + R I L Sbjct: 243 ERVRVRHVLPQKKLTEIAQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGKPPSFL 302 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANF 315 F ++ + + GG L + + + L L ++ ++ VI+ Sbjct: 303 QKHHAFSF-VIGLFIVLMGGSSYLLSSQKLAVLDQKLSLHDPEKKRFTLAGAVIEYSRKG 361 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 + I R R++ ++ P ET +WD RYQ N I +GP Sbjct: 362 IAIWREARHIQKAMIAPGETCIWDQRYQITNHDTLDICVGPA 403 >gi|30061745|ref|NP_835916.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T] gi|30039987|gb|AAP15721.1| cell cycle protein [Shigella flexneri 2a str. 2457T] gi|281599543|gb|ADA72527.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2002017] gi|332762035|gb|EGJ92306.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2747-71] gi|332762192|gb|EGJ92461.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 4343-70] gi|332765037|gb|EGJ95265.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-671] gi|332768691|gb|EGJ98871.1| hypothetical protein SF293071_0275 [Shigella flexneri 2930-71] gi|333009368|gb|EGK28824.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-218] gi|333022234|gb|EGK41473.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-304] Length = 432 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ +W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|322515650|ref|ZP_08068628.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976] gi|322118301|gb|EFX90584.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976] Length = 419 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 98/420 (23%), Positives = 172/420 (40%), Gaps = 37/420 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L +++ F ++ +SGG DS+ +L + K+ A+ + H Sbjct: 1 MLLDTLQT--QFRHYFPTQRDFVLGLSGGIDSIV-------LLHLLAELKLNLRAVHIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + VC RL+I + + + G+ A AR ARY I E + Sbjct: 52 GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARTARYQAIGEII--LPNE 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET + +R KG+ + + N I RP L + I + Sbjct: 109 VLVTAHHLDDQAETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKTQIEQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ+ ++W ED SN D +ER +R V L + + + F + + A ML Sbjct: 166 ALQQQLTWIEDESNHDSHYERNFLRNEV----LPIMNQRWQHFSQMVARSAQHCAEQQML 221 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291 + + LT ++ S+ LNI F L+R+ CG Q +P + +V+ Sbjct: 222 LEELLTQELQRYADFSEKRLNIKDFPQFSVAKQQQLIRLWLEKCGTQ--MPSTVRLIQVI 279 Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWDGRYQFQ 345 ++ K + + + R + L++T + L L+ + T+ DG + Q Sbjct: 280 QQMIYTNVDKNPQIKLADFWLRRYQHHLYLTGELLELDDFCQLLFAQQSLTLPDGIGELQ 339 Query: 346 NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 +L DS+I + +P + Q L+ + GKP+ + + +PV Sbjct: 340 HLGDSIIYKKSGKINRLLLPEALVDASLQVKLAHQGKVAQYGKPMREEMKKLYQQAQVPV 399 >gi|333011028|gb|EGK30447.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-272] gi|333021823|gb|EGK41072.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-227] Length = 432 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 152/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ ++ C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALVREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ +W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|218688063|ref|YP_002396275.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a] gi|331681573|ref|ZP_08382210.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H299] gi|218425627|emb|CAR06413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a] gi|315300660|gb|EFU59887.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 16-3] gi|331081794|gb|EGI52955.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H299] Length = 437 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I + R +A + G +P ++ R+ + C+ + Sbjct: 236 TQQGTLKIAPMVAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V IL W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETILP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 422 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 79/357 (22%), Positives = 138/357 (38%), Gaps = 15/357 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S Y + VAVSGG DS+ LL + + +A++V+H LR ++ E +V Sbjct: 5 SAFYNNQVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--TALTVNHGLRPESQKEADFVV 62 Query: 75 DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L +++W+ + + AR+ARY L++E K N ++ AH DDQ E Sbjct: 63 SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T +R +R G+ D + ++I RP L R +I + + W ED S Sbjct: 123 TFLLRLERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWVEDRS 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 N D ++ R R ++ D + L + + + + + VH Sbjct: 180 NYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 239 Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGR 306 I I + + + LL S + P Y S+ + L+ ++ Sbjct: 240 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSG 299 Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 I + + I R + + L E+T WD R+ L + + +K Sbjct: 300 CKIRKHGENILIIRESSKIQEITLNLPLNESTQWDNRFSCTILGNQECSVIIAPLKK 356 >gi|300938597|ref|ZP_07153329.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1] gi|300456443|gb|EFK19936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1] Length = 437 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C R ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENICQRWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V IL W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETILP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|170682716|ref|YP_001742316.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SMS-3-5] gi|170520434|gb|ACB18612.1| tRNA(Ile)-lysidine synthase [Escherichia coli SMS-3-5] Length = 432 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|24111623|ref|NP_706133.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 301] gi|61216594|sp|Q7UDQ6|TILS_SHIFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24050392|gb|AAN41840.1| cell cycle protein [Shigella flexneri 2a str. 301] Length = 432 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW +++ I+ +W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSITGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062] gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062] Length = 441 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 99/407 (24%), Positives = 163/407 (40%), Gaps = 24/407 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG+DSM LL L + F K A +V+H LR A E V+ C+R Sbjct: 27 RRIAIGVSGGADSMALLYLLKQWTQELGFAAPKLYAFTVNHGLRAEAASEAVGVAQYCTR 86 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + H + W+ KP + + +AAR+AR+ L+ + ++ + AH +DQ ET R Sbjct: 87 IEVPHETLLWEGDKPSSNIQSAARDARHRLLRQASEDHGCDALFLAHHLEDQAETFLTRL 146 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GL+ + D I RP L + +++ L ++ W EDPSN D++F Sbjct: 147 ARGSGV--YGLACIRRDREMD-GFHICRPLLNISKARLKAVLHSAHVPWFEDPSNEDEQF 203 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAMLIPKYLTVHMRSIIAI 252 R++ R+ +L L L K D ++ V + K T H + Sbjct: 204 TRIKFRQ--AQSELDELGLTATKLFDTARRMARAADAIDVWVDEVAEKSCTFHSAGPVRF 261 Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVI- 309 L I + L+ G +P +E + LKS + ++G V Sbjct: 262 DSSCLEYIPDEIGLRLVGRLVRYISGAPYMPRLAKLEGLYETLKSEEGARAATLGGVRFA 321 Query: 310 --DRRANFLWIT-RAV--RNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIG-PQSYRKA 362 + +W R LP + + P + +WD R++++ S +I Q Sbjct: 322 LAKPHEDGIWFCFREAGRAGLPEVEVKPGDEGIWDERWRYKAAHSSEGFRITYVQKELCG 381 Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPL-LAPFSRF-MTKFDLPVAYA 407 D IP + A + P + P+ + T D V Sbjct: 382 DFELEIPANWLKTAFLTAPLIVFADGVSYMPWKKIGQTSADAEVRSR 428 >gi|218698608|ref|YP_002406237.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39] gi|218368594|emb|CAR16331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39] Length = 432 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|331645331|ref|ZP_08346442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M605] gi|281177413|dbj|BAI53743.1| cell cycle protein [Escherichia coli SE15] gi|330910038|gb|EGH38548.1| tRNA(Ile)-lysidine synthetase [Escherichia coli AA86] gi|331046088|gb|EGI18207.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M605] Length = 437 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + Q ++ W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWARQYDLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TQQGTLKIAPMLAMSDARRAAIIRRWLAGQNAPMPSREALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|300990435|ref|ZP_07179203.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1] gi|300305735|gb|EFJ60255.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1] Length = 437 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L + + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGVGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|331671694|ref|ZP_08372492.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA280] gi|331071539|gb|EGI42896.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA280] Length = 432 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGKVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|110640407|ref|YP_668135.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 536] gi|191172763|ref|ZP_03034300.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11] gi|110341999|gb|ABG68236.1| putative cell cycle protein MesJ [Escherichia coli 536] gi|190906913|gb|EDV66515.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11] Length = 437 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi] gi|254764825|sp|C0R4S1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila ananassae] gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi] Length = 431 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 77/351 (21%), Positives = 135/351 (38%), Gaps = 15/351 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG DS+ LL + + +A++V+H LR ++ E +V L Sbjct: 20 QVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--TALTVNHGLRPESQKEADFVVSYAKEL 77 Query: 81 RIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++W+ + + AR+ARY L++E K N ++ AH DDQ ET +R Sbjct: 78 GAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRL 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ D + ++I RP L R +I + + W ED SN D ++ Sbjct: 138 ERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNYDLKY 194 Query: 200 ERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 R R ++ D + L + + + + + VH I I Sbjct: 195 RRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKL 254 Query: 255 -DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGRVVIDRR 312 + + + LL S + P Y S+ + L+ ++ I + Sbjct: 255 SEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSGCKIRKH 314 Query: 313 ANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + I R + + L E T WD R+ L + + +K Sbjct: 315 GENILIIRESSKIQEITLNLPLNEPTQWDNRFSCTILGNQECSVIIAPLKK 365 >gi|293408280|ref|ZP_06652120.1| tilS [Escherichia coli B354] gi|291472531|gb|EFF15013.1| tilS [Escherichia coli B354] Length = 432 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + I Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLSDDIAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|157158325|ref|YP_001461357.1| tRNA(Ile)-lysidine synthetase [Escherichia coli E24377A] gi|193063304|ref|ZP_03044395.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22] gi|193067588|ref|ZP_03048555.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019] gi|194428333|ref|ZP_03060875.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171] gi|256021620|ref|ZP_05435485.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] gi|260842420|ref|YP_003220198.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009] gi|260853398|ref|YP_003227289.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368] gi|260866337|ref|YP_003232739.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128] gi|293476845|ref|ZP_06665253.1| cell cycle protein MesJ [Escherichia coli B088] gi|332282862|ref|ZP_08395275.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] gi|157080355|gb|ABV20063.1| tRNA(Ile)-lysidine synthase [Escherichia coli E24377A] gi|192931212|gb|EDV83815.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22] gi|192959000|gb|EDV89436.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019] gi|194413708|gb|EDX29988.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171] gi|257752047|dbj|BAI23549.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368] gi|257757567|dbj|BAI29064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009] gi|257762693|dbj|BAI34188.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128] gi|291321298|gb|EFE60740.1| cell cycle protein MesJ [Escherichia coli B088] gi|320200286|gb|EFW74872.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EC4100B] gi|323157975|gb|EFZ44077.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EPECa14] gi|323176503|gb|EFZ62095.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1180] gi|323181696|gb|EFZ67110.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1357] gi|332105214|gb|EGJ08560.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9] Length = 432 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|215485349|ref|YP_002327780.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str. E2348/69] gi|312966325|ref|ZP_07780551.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75] gi|215263421|emb|CAS07741.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str. E2348/69] gi|312289568|gb|EFR17462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75] Length = 437 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADVWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSAFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|222032018|emb|CAP74757.1| tRNA(Ile)-lysidine synthase [Escherichia coli LF82] gi|312944796|gb|ADR25623.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O83:H1 str. NRG 857C] Length = 432 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|319404754|emb|CBI78356.1| tRNA(Ile)-lysidine synthase [Bartonella rochalimae ATCC BAA-1498] Length = 487 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 108/402 (26%), Positives = 173/402 (43%), Gaps = 51/402 (12%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F + +++ VSGG DS+ LL + L + +++DH LRE Sbjct: 4 KLAKNLFKKTDFAHCQKLILGVSGGGDSLALLFLVKEHLKTVPLAP-EVIVVTIDHQLRE 62 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + E V+ +C L+I H VV W+ KP+T + AR ARY L+ + A+ ATLIMT Sbjct: 63 ESAYEAESVAKICHALQIKHIVVRWEGKKPRTQISEKARIARYDLLFKEAQKQGATLIMT 122 Query: 125 AHTFDDQLETVYMRSQRD---------------YAEKG---------------------- 147 HT +DQ ET MR QR + E+G Sbjct: 123 GHTLNDQAETYQMRVQRSQKKTDGAQQEIPEILWEERGKERESANEEMQILKEKSQKRSA 182 Query: 148 --------MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 GLS M L + + RP L RR+ +R++L + W +DP+N D +F Sbjct: 183 ENDEERYERGLSCMPREALLYGKVRLIRPLLGVRRKTLRAYLSLQGSKWIDDPTNEDLKF 242 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL 257 ERVRVR + + + K+ K RV+ +++ +TV + R I L Sbjct: 243 ERVRVRHVLHQKKMTEIAQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGQPPSFL 302 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANF 315 F ++ + + GG L + + + L L + ++ ++ VI+ Sbjct: 303 QKHHAFPF-VVGLFIVLMGGSSYLLSSQKLAVLDQKLSLHNPEKKRFTLAGAVIEYSRKG 361 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 + I R R++ ++ P E +WD RYQ N S I++GP Sbjct: 362 IAIWREARHIQEAMIAPGEIFIWDQRYQIINHDTSAIRVGPA 403 >gi|288937030|ref|YP_003441089.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22] gi|290512451|ref|ZP_06551817.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55] gi|288891739|gb|ADC60057.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22] gi|289774792|gb|EFD82794.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55] Length = 437 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 48/432 (11%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +LVA SGG DS LL L + + A+ V H L A D V + Sbjct: 10 AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 67 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V ++ G+ A AR ARY + +++TA DDQ Sbjct: 68 CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +R GLS M + + + + RP L RE +R + L +SW ED Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFADS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN DD ++R +R V + L + F + + + A L+ + L + S+ Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238 Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +A + ++ LLR A G Q +P ER+ + C Sbjct: 239 VAEDGSLAITPLTSMSPPRRAALLRRWLA--GQQAPMPAREVPERLWHEVALAREDASPC 296 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +G + R L+ + + + + W Q L+D L ++ Q + Sbjct: 297 LRLGDFTVRRFQQRLYWVKYLPGQTESVQH------WPDWRQPLRLADGLGELMLQPGGR 350 Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406 PS P+ + RA + + GG+ L + P+ R T + P+A Sbjct: 351 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAA 410 Query: 407 A---FSISFGKV 415 A F + G+V Sbjct: 411 ADDLFVTTEGEV 422 >gi|157159653|ref|YP_001456971.1| tRNA(Ile)-lysidine synthetase [Escherichia coli HS] gi|209917378|ref|YP_002291462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SE11] gi|218552769|ref|YP_002385682.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1] gi|218693653|ref|YP_002401320.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989] gi|307311364|ref|ZP_07591006.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|331666429|ref|ZP_08367310.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA271] gi|331680767|ref|ZP_08381426.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H591] gi|157065333|gb|ABV04588.1| tRNA(Ile)-lysidine synthase [Escherichia coli HS] gi|209910637|dbj|BAG75711.1| cell cycle protein [Escherichia coli SE11] gi|218350385|emb|CAU96068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989] gi|218359537|emb|CAQ97075.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1] gi|306908343|gb|EFN38841.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|315059406|gb|ADT73733.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W] gi|323380035|gb|ADX52303.1| tRNA(Ile)-lysidine synthetase [Escherichia coli KO11] gi|323945665|gb|EGB41714.1| PP-loop family protein [Escherichia coli H120] gi|324017845|gb|EGB87064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 117-3] gi|324118308|gb|EGC12203.1| PP-loop family protein [Escherichia coli E1167] gi|331066640|gb|EGI38517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA271] gi|331072230|gb|EGI43566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H591] Length = 432 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|254360930|ref|ZP_04977076.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213] gi|261493843|ref|ZP_05990355.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495109|ref|ZP_05991573.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092409|gb|EDN73472.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213] gi|261309179|gb|EEY10418.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310445|gb|EEY11636.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 421 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 137/334 (41%), Gaps = 29/334 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L L+ +SGG DS+ LL AI V H L A D + Sbjct: 14 HLPNQTAFLIGLSGGVDSVVLLHLFAR-------TSFHVRAIYVHHGLSPNADDWAAFCE 66 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C RL I ++ G+ AREARY I + K + TAH DDQ ET Sbjct: 67 QYCKRLNIPF-ILQKVRVDSSNGVENGAREARYQAIQQQLKPN--EVFATAHHLDDQAET 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R KG+ + + N + RP L + D+ + +Q + W ED SN Sbjct: 124 FLLALKRGSGVKGLSAM---QAVTFLQNFTVFRPLLTFTKSDLMGYAVQHQLGWIEDESN 180 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIA 251 D+R++R +R + L L + + F + + A LI + L+ ++S Sbjct: 181 ADNRYDRNFLRNSI----LPLLNQRWQHFSQMVARSAQHCAEQQALIEELLSNELKSRTG 236 Query: 252 ISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERV---MLFLKSGKRGCVSI 304 Q LNI+ F L + + + +P ++ V ++F K+ K V + Sbjct: 237 EKQQ-LNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQAVISELIFAKADKNPQVKV 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTL-ILYPEETTV 337 G +I R +++T + ++P ++ P ET V Sbjct: 296 GENIIRRYQQAIYVTEEIADIPPFEVVLPTETKV 329 >gi|91209258|ref|YP_539244.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UTI89] gi|117622473|ref|YP_851386.1| tRNA(Ile)-lysidine synthetase [Escherichia coli APEC O1] gi|218557129|ref|YP_002390042.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88] gi|237704347|ref|ZP_04534828.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA] gi|331661259|ref|ZP_08362191.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA206] gi|91070832|gb|ABE05713.1| putative cell cycle protein MesJ [Escherichia coli UTI89] gi|115511597|gb|ABI99671.1| putative cell cycle protein MesJ [Escherichia coli APEC O1] gi|218363898|emb|CAR01563.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88] gi|226902259|gb|EEH88518.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA] gi|294494175|gb|ADE92931.1| tRNA(Ile)-lysidine synthase [Escherichia coli IHE3034] gi|307629764|gb|ADN74068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UM146] gi|315285280|gb|EFU44725.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 110-3] gi|323950813|gb|EGB46690.1| PP-loop family protein [Escherichia coli H252] gi|323955070|gb|EGB50846.1| PP-loop family protein [Escherichia coli H263] gi|331052301|gb|EGI24340.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli TA206] Length = 432 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW + V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKFVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid E] gi|6226316|sp|Q9ZEA3|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii] gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii Rp22] Length = 430 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 95/424 (22%), Positives = 179/424 (42%), Gaps = 34/424 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ + ++ I+ ISVDH LR +K E Y+ + S Sbjct: 20 SKIAIAVSGGSDSISLLY-LANIWARKN--NIELFVISVDHNLRPQSKQENYYIHTISSN 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKYYNLSFDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ I W ED SN D++ Sbjct: 137 ERNSGIFGLSSSNIH----WYNNIQIIRPLYNIPKSELVEYLVNHKIKWFEDESNLSDKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 R +R+ + Y+K + ++K N + + L + + I + Sbjct: 193 RRNIIRQKL---FKEENYIKAE-ISLQQLKTNKLIEDELKPALISAIAEAVKIFEYGFTF 248 Query: 255 -DILNIDS---TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 D++ D + ++ + GQ + S+ ++ + ++ VI Sbjct: 249 LDLVKFDKFLNEVKAQIINFLLIMISGQSRSARFYSIAHILKLISQDINFKNTVHGCVIK 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R N L I R + LP + +++ +WD R+ + + +Y I Sbjct: 309 RIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQKTPDCVI--TYLSLADYKAIK 366 Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419 + + L ++ K L P + + K +D V + F +SF F+ R Sbjct: 367 KQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDV-WNFEVSFAPNFVSR 425 Query: 420 LPFF 423 F Sbjct: 426 FTHF 429 >gi|82542786|ref|YP_406733.1| tRNA(Ile)-lysidine synthetase [Shigella boydii Sb227] gi|187730131|ref|YP_001878990.1| tRNA(Ile)-lysidine synthetase [Shigella boydii CDC 3083-94] gi|81244197|gb|ABB64905.1| cell cycle protein [Shigella boydii Sb227] gi|187427123|gb|ACD06397.1| tRNA(Ile)-lysidine synthase [Shigella boydii CDC 3083-94] gi|320186610|gb|EFW61335.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri CDC 796-83] gi|332098780|gb|EGJ03740.1| tRNA(Ile)-lysidine synthase [Shigella boydii 3594-74] Length = 432 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|300932146|ref|ZP_07147429.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1] gi|300460083|gb|EFK23576.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1] Length = 432 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 86/407 (21%), Positives = 144/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L + + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGVGSVQLTAGVDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|194439921|ref|ZP_03071983.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1] gi|253774785|ref|YP_003037616.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160307|ref|YP_003043415.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606] gi|312970289|ref|ZP_07784471.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70] gi|194421167|gb|EDX37192.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1] gi|242376019|emb|CAQ30702.1| tRNA[Ile]-lysidine synthetase [Escherichia coli BL21(DE3)] gi|253325829|gb|ACT30431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972208|gb|ACT37879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606] gi|253976417|gb|ACT42087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BL21(DE3)] gi|310337787|gb|EFQ02898.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70] gi|323959949|gb|EGB55596.1| PP-loop family protein [Escherichia coli H489] gi|323970667|gb|EGB65923.1| PP-loop family protein [Escherichia coli TA007] Length = 432 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 144/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGVDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|323975644|gb|EGB70740.1| PP-loop family protein [Escherichia coli TW10509] Length = 431 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|323170980|gb|EFZ56629.1| tRNA(Ile)-lysidine synthase [Escherichia coli LT-68] Length = 432 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 152/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + ++ Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLVHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGALQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWQQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|218547643|ref|YP_002381434.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469] gi|218355184|emb|CAQ87791.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469] Length = 432 Score = 269 bits (688), Expect = 7e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVMHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + + V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICHQWHVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|206578043|ref|YP_002240324.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342] gi|206567101|gb|ACI08877.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342] Length = 437 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 48/432 (11%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +LVA SGG DS LL L + + A+ V H L A D V + Sbjct: 10 AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 67 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V ++ G+ A AR ARY + +++TA DDQ Sbjct: 68 CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +R GLS M + + + + RP L RE +R + L +SW ED Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFADS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN DD ++R +R V + L + F + + + A L+ + L + S+ Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238 Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +A + ++ LLR A G Q +P ER+ + C Sbjct: 239 VAEDGSLSITPLTSMSPPRRAALLRRWLA--GHQAPMPAREVPERLWHEVALAREDASPC 296 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +G + R L+ + + + + W Q L+D L ++ Q + Sbjct: 297 LRLGDFTVRRFQQRLYWVKYLPGQTESVQH------WPDWRQPLRLADGLGELMLQPGGR 350 Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406 PS P+ + RA + + GG+ L + P+ R T + P+A Sbjct: 351 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAA 410 Query: 407 A---FSISFGKV 415 A F + G+V Sbjct: 411 ADDLFVTTEGEV 422 >gi|152968782|ref|YP_001333891.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953631|gb|ABR75661.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 437 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 105/444 (23%), Positives = 173/444 (38%), Gaps = 51/444 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF+ + + +L +LVA SGG DS LL L + + A+ V H Sbjct: 1 MFVDMLADI---AHTLHPHRQLLVAFSGGLDSTVLLHQLVQLREQ--DPALTLRAVHVHH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A V + VC + ++ V ++ G+ A AR ARY E Sbjct: 56 GLSAHADQWVAHCRQVCQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQETLNA--GE 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET+ + +R GLS M + + + + RP L RE +R + Sbjct: 114 VLVTAQHQDDQCETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQW 170 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237 L +SW ED SN DD ++R +R V + L + F + + + A L Sbjct: 171 ALAHQLSWIEDESNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQL 226 Query: 238 IPKYLTVHMRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM- 291 + + L + S++A + + LLR A G Q +P ER+ Sbjct: 227 LDEMLAAELASLVAEDGSLAIAPLATMSPPRRAALLRRWLA--GQQAPMPAREVPERLWH 284 Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 + C+ +G + R L+ + + + W Q L+D Sbjct: 285 EVALAREDASPCLRLGEFTVRRFQQRLYWVKYLPGQTDSVQR------WPDWRQPLRLAD 338 Query: 350 SLIQIGPQSYRKADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMT 398 L ++ Q + PS P+ + RA + + GG+ L +AP+ R T Sbjct: 339 GLGELTLQPGGRLRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTT 398 Query: 399 KF----DLPVAYA---FSISFGKV 415 + P+A A F + G+V Sbjct: 399 PLLFYGETPIAAADDLFVTTEGEV 422 >gi|320196935|gb|EFW71556.1| tRNA(Ile)-lysidine synthetase [Escherichia coli WV_060327] Length = 437 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 150/406 (36%), Gaps = 37/406 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 8 QLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHCE 65 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ ET Sbjct: 66 NICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCET 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + RP L R ++ + Q ++ W ED SN Sbjct: 124 FLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWARQYDLRWIEDESN 180 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252 DD ++R +R V + L + F + + A + + Sbjct: 181 QDDFYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQT 236 Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305 Q L I L R +A + G +P ++ R+ + C+ +G Sbjct: 237 QQGTLKIAPMLAMSDARRAAIIRRWLAGQNAPMPSREALVRIWQEVALAREDASPCLRLG 296 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R + LW ++V I+ W Q L L + + P Sbjct: 297 AFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPP 350 Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 351 RADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|188492707|ref|ZP_02999977.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638] gi|254037607|ref|ZP_04871684.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43] gi|188487906|gb|EDU63009.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638] gi|226840713|gb|EEH72715.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43] Length = 432 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|300824089|ref|ZP_07104209.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7] gi|300523366|gb|EFK44435.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7] Length = 432 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ RY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|320173331|gb|EFW48534.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae CDC 74-1112] Length = 432 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIMP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|191167023|ref|ZP_03028845.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A] gi|300816228|ref|ZP_07096451.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1] gi|300923020|ref|ZP_07139087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1] gi|309796365|ref|ZP_07690774.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7] gi|190902916|gb|EDV62643.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A] gi|300420647|gb|EFK03958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1] gi|300531435|gb|EFK52497.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1] gi|308120069|gb|EFO57331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7] Length = 432 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 145/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW +V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWINSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 443 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 110/413 (26%), Positives = 177/413 (42%), Gaps = 22/413 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P E+ F L H+++AVSGG DSM LL+ R+ S +VDH L Sbjct: 9 ITPDEADAAF-EPLAKFEHVVLAVSGGPDSMALLVLASEWRQRRNGAPPSLSVATVDHGL 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-- 120 R + E +V+ RL + H + W KP G+ AAR ARY L+ +HA+ ++A+ Sbjct: 68 RPESPREAEFVASEAQRLGLPHVTLPWTGEKPSRGIPDAARRARYRLLDDHARALSASDV 127 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DQ ET MR R G+ + + + RP L + + + Sbjct: 128 AVVTAHHQGDQAETFAMRLARGAGVNGLAGMPAERVLHEGSTVSLVRPLLAFAKSRLIAT 187 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L R +S +DPSN+D R+ER R+R + D+D + R+ A + Sbjct: 188 LEARGLSSVDDPSNSDHRYERARMRSALSDLDAAGISPAALATSARRLGEAEAALRYADE 247 Query: 241 YLTVHMRS------IIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLF 293 + A ++ LL LL A GG P +E + Sbjct: 248 CFAATLALSFGNEVFAAFDRNAFRAGPALLRQRLLGSLIARYGGASERPDLVEIEDLTAR 307 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSL 351 L++ + ++G V++ + F+ + R L LIL P E+ WD R+ Q +D++ Sbjct: 308 LQAEDKSTATLGGVMVSSGSRFVRVWREAGRLTQSDLILSPGESRTWDRRFIVQRAADAI 367 Query: 352 IQ-----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGK-----PLLAPFS 394 +G ++Y + RA ++PS G P LAPF+ Sbjct: 368 GAVKVRPLGAENYARIAGRLAAKYRPPSRAAHALPSFWQGDDLVAVPSLAPFA 420 >gi|170021459|ref|YP_001726413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739] gi|169756387|gb|ACA79086.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739] Length = 432 Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11] gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11] Length = 459 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 17/394 (4%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + SL + I +AVSGG DS+ LL+A S R++ + VDH LR + Sbjct: 23 IDQLFHSLKNFSKIALAVSGGGDSVCLLLAFCEWRSRRNWEG-ACEVVVVDHQLRPESSQ 81 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V ++ + + ++ W + KP+TG+ AAR ARY LI++ ++ AH Sbjct: 82 EACFVRELSEQHGLRCHILKWTDDKPETGVQEAARGARYQLIAKQTAVSGFEAVLLAHHL 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET R R G+G D L + RPFL + + + L +R+ W Sbjct: 142 DDQAETFLDRLTRGSGLNGLGAMA-SDEPEGPAGLRLLRPFLGVPKSRLLATLEERDQKW 200 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKYLT 243 C+DPSN +++R R+R + L ++ + R + +A L +++ Sbjct: 201 CDDPSNKSLKYKRSRLRSISSTLSEEGLSPSRIATTARQLRRAREALEMVLAELFRQHVE 260 Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 H + S + LL + G++ P R +E + ++ + G Sbjct: 261 EHPAGPVKTSTLVFRAQSEEFRLRLLILMIERVTGRVYQPKLRKIEALDHWILNNNAGRQ 320 Query: 303 SIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQ-------NLSDSLIQI 354 ++G V++ + + L++ + + R+ P ++ WD R+ F S + + Sbjct: 321 TLGGAVLEIKRDTLFVWKEIGRSPPEVLENLRGEGNWDARFLFDVQAAAGAPSSSMAVSL 380 Query: 355 GPQSYRKADVPS-GIPPIIAQRALSSMPSKEGGK 387 GP D P + A S P G Sbjct: 381 GPLFNAPVDRRQVSWPNGWPKEAFESAPVFWIGN 414 >gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington] gi|61216485|sp|Q68XR8|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington] Length = 430 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 94/424 (22%), Positives = 184/424 (43%), Gaps = 34/424 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LR +K E Y+ + + Sbjct: 20 SKIAIAVSGGSDSVALLY-LANIWAEKN--NIELFIISVDHNLRAQSKQENYYIQSISNN 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L+ + +S+ + + L A ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LKRKYYNLSFDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ I W ED SN D++ Sbjct: 137 ERNSGIFGLSSSNIH----WYNNIQIIRPLYNIPKSELVKYLVTNKIKWFEDESNLSDKY 192 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 R +R+ + Y+K + ++K N + + L + + I + Sbjct: 193 RRNIIRQKL---FKEENYIKAE-ISVQQLKTNKLIEDELKPELISAIGEAVKIFEYGFTF 248 Query: 255 -DILNIDS---TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 D++ D + ++ + GQ + S+ ++ + ++ VI Sbjct: 249 LDLVKFDKFSNEVKVQIINFLLIMISGQSRSARFYSIAPILKLISQNVNFKKTVHGCVIT 308 Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R N L I R + LP + +++ +WD R+ ++ + +Y + I Sbjct: 309 RIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQETPDCVI--TYLSLEDYKVIK 366 Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419 + + L ++ K L P + + K +D + + F +SF F+ R Sbjct: 367 KQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSR 425 Query: 420 LPFF 423 F Sbjct: 426 FTHF 429 >gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 407 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 143/378 (37%), Gaps = 17/378 (4%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH- 84 VSGG DS+ LL + + A++V+H LR ++ E +V L Sbjct: 1 VSGGVDSVVLLHLMTNWAKKNKLLLP--IALTVNHGLRPESQKEADFVVSYAKELGAKES 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 +++W+ + + AR+ARY L++E K N ++ AH DDQ ET +R +R Sbjct: 59 FILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRLERGSG 118 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 G+ D + ++I RP L R +I + + W ED SN D ++ R Sbjct: 119 VDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNHDLKYRRTLY 175 Query: 205 RRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILN 258 R ++ D + L + + + + + VH I I + Sbjct: 176 RNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYQ 235 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGRVVIDRRANFLW 317 + + LL S + P Y S+ + L+ ++ I + + Sbjct: 236 LPEEIALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSGCKIRKYGENIL 295 Query: 318 ITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPSGIPPIIAQ 374 I R + + L E T WD R+ L + + +K VP + Sbjct: 296 IIRESSRIQEITVNLPLNEPTQWDNRFSCTILGNQGCSVIIAPLKKTQKVPEFLKDYNCC 355 Query: 375 RAL-SSMPSKEGGKPLLA 391 + S+P+ + +LA Sbjct: 356 PEVFYSLPTVQKDSKVLA 373 >gi|332095129|gb|EGJ00161.1| tRNA(Ile)-lysidine synthase [Shigella boydii 5216-82] Length = 432 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADSWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPILAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|323190412|gb|EFZ75687.1| tRNA(Ile)-lysidine synthase [Escherichia coli RN587/1] Length = 432 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADVWVIHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSAFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|324112401|gb|EGC06378.1| PP-loop family protein [Escherichia fergusonii B253] Length = 431 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANANAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|301330010|ref|ZP_07222697.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1] gi|300843964|gb|EFK71724.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1] Length = 432 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 145/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPYFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW +V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWINSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|194435002|ref|ZP_03067243.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012] gi|194416738|gb|EDX32866.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012] gi|320180904|gb|EFW55826.1| tRNA(Ile)-lysidine synthetase [Shigella boydii ATCC 9905] gi|332097611|gb|EGJ02588.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 155-74] Length = 432 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLL--GEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|300902007|ref|ZP_07120034.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1] gi|301305324|ref|ZP_07211420.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1] gi|300405893|gb|EFJ89431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1] gi|300839429|gb|EFK67189.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1] gi|315254990|gb|EFU34958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 85-1] Length = 432 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTLRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + I Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDIAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 KPQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|163869123|ref|YP_001610362.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476] gi|189035963|sp|A9IYI2|TILS_BART1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161018809|emb|CAK02367.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476] Length = 495 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 180/413 (43%), Gaps = 58/413 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + F + +++AVSGGSDS+ L+ + L + A++VDH LR+ Sbjct: 5 LARNLFKTSDFIPCRRVILAVSGGSDSLALMFLVKEYLETLLIPP-EIIAVTVDHQLRKE 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + E V+++C I H V W+ KP+T L +AR ARY L+ + A+ A+LIMT Sbjct: 64 SAREAEIVAEICRDHHIKHITVRWEGKKPKTHLAFSARIARYDLLVQEAQKQGASLIMTG 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGM------------------------------------- 148 HT +DQ+ET MR QR +G Sbjct: 124 HTLNDQVETYQMRCQRLQKRRGALRDEVGAMCDGGAASGFAGALRDKAGARRDEDYVRET 183 Query: 149 ---------------GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 GLS + L + + RP L +R+ +R++L + +W +DP+ Sbjct: 184 RKNIAEKSYGVLYERGLSCIPREALLHRKVRLIRPLLGVQRQTLRNYLRLQGKTWIDDPT 243 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIA 251 N D FERVRVR+ + L + K+ K R + N +++ +TV + R I Sbjct: 244 NEDRNFERVRVRQSLSSQKLVNIAQKINKAAWQRRQQAQNIADLILALDITVQYGRCFIV 303 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVI 309 L S F ++ + A + GG L + + ++ L L S ++ + VI Sbjct: 304 KPAPFLQKHSCFPF-VVGLFAVLMGGGFYLLSNQKLSMLVQKLCLNSPEKRRFTCAGCVI 362 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 + + + R RN+ ++ P+ET +WDGRY+ N I++G + + Sbjct: 363 EYNKEGIALWRERRNMKEALVEPDETLLWDGRYRITNHGSEAIKVGVANLEQL 415 >gi|49476135|ref|YP_034176.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1] gi|61216510|sp|Q6G5P5|TILS_BARHE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49238943|emb|CAF28239.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1] Length = 493 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 109/402 (27%), Positives = 178/402 (44%), Gaps = 56/402 (13%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + +++AVSGGSDS+ LL + L S + ++VDH LR+ + E V+ Sbjct: 14 DFIQCQKLILAVSGGSDSLALLFLVKDHLKTLSVPP-EIIVVTVDHQLRQESAREASIVA 72 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C I H +V W+ KP+T + ++AR ARY L+ + A+ ATLIMT HT +DQ+ET Sbjct: 73 EICRAHHIQHRIVRWEGKKPKTHIASSARVARYDLLFQEAQKQGATLIMTGHTLNDQVET 132 Query: 135 VYMRSQR-------------------------------------DYAEKG---------- 147 MR QR G Sbjct: 133 YQMRYQRLQKSADVLQQEAFAEMGGGVHADVLQQEAFAERCERMGVGGHGGDIAEKSDGL 192 Query: 148 ---MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GLS + L + + RP L +RE +R++L + +W EDP+N D FERVRV Sbjct: 193 IYERGLSCIPREALLRGTVRLIRPLLGVKRETLRTYLRLKEKTWIEDPTNEDCNFERVRV 252 Query: 205 RRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDST 262 R+ ++ + K+ + R + N +++ +TV + R IA L Sbjct: 253 RQSLQPKKFTCIARKVHEAALQRRQQAKNIADLILALDITVEYGRCFIAKPALFLQKHPG 312 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVIDRRANFLWITR 320 F + + + GG LP ++ + ++ L L S ++ + VI+ + + R Sbjct: 313 FPFVVGLFAVLMGGGFYLLP-HKKLSTLVQKLSLHSSEKRRFTYAGSVIEYNRSGIAFWR 371 Query: 321 AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 RN+ I+ +T +WDGRYQ N S I++G ++ Sbjct: 372 EARNIKEAIVEKGQTFLWDGRYQITNHSHEPIKVGAAGLQQL 413 >gi|301155698|emb|CBW15166.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae T3T1] Length = 430 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 143/346 (41%), Gaps = 30/346 (8%) Query: 11 FFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F + PA +L+A SGG DS LL + + R + AI + H L A Sbjct: 6 LFQAQIPTPANKLLIAFSGGLDSTALLSLVKKLSKKR--PHLSLRAIHIHHGLSPNADTW 63 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +C + I V K + G+ A AREARY IS H + ++TAH + Sbjct: 64 TAHCQQLCKQFAIPLIVEKVKV-EMHDGIEAGAREARYQAISTHIQP--DEYLVTAHHLN 120 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET ++ +R +G+G ++ L+ + I RP L R ++ ++ Q N+SW Sbjct: 121 DQTETFFLALKRGAGLQGLGAM-QKESQLF--GMPILRPLLSFSRNELEDYVQQENLSWV 177 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHM 246 ED SN D+ +ER +R + L L + F + LI + L Sbjct: 178 EDESNQDNHYERNFLRNQI----LPELRQRWGHFDYAVQRAAQHCFEQQQLINELLQTCF 233 Query: 247 RSIIAISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSG 297 I Q + LN S LLR+ A QI++P + ++ + K+ Sbjct: 234 EQHIFEDQKQFSLLNFLNYSSQKQTALLRMWLA--KNQIAMPTQIQLMHIIDDVIQAKAD 291 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDG 340 +G +I R L++T +L L ++ T+ D Sbjct: 292 ASPQFQLGEHIIRRYQECLYLTGKFSDLSQTCLDMPLNQQITLPDN 337 >gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|254764824|sp|B3CLY6|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine synthetase) (trna(ile)-2-lysyl-cytidine synthase) [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 430 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 146/389 (37%), Gaps = 17/389 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + I VAVSGG DS+ LL + + A++V+H LR ++ E ++ Sbjct: 13 SFAFHNQIAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--IALTVNHGLRSESQKEADFII 70 Query: 75 DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L +++W+ + + AR+ARY L++E K N ++ AH DDQ E Sbjct: 71 SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHKDDQAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T +R +R G+ D + ++I RP L R +I + + W ED S Sbjct: 131 TFLLRLERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIERYAKLHQLRWIEDRS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 N D ++ R R ++ D + L + + + + + VH Sbjct: 188 NYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMHYTRLAFDDCVNVHDFG 247 Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGR 306 I I + + + LL S + P Y S+ + L+ G ++ Sbjct: 248 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKGSNVNCTLSG 307 Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-AD 363 I + + I R + + L + WD R+ D + +K Sbjct: 308 CKIRKYGENILIIRESSKIQEITVHLPLNGSIEWDNRFSCTIFGDQECSVTIAPLKKTQK 367 Query: 364 VPSGIPP-IIAQRALSSMPSKEGGKPLLA 391 +P + S+P+ + +LA Sbjct: 368 IPEFLKNYDYCSEVYYSLPTVQKDGKMLA 396 >gi|323964919|gb|EGB60385.1| PP-loop family protein [Escherichia coli M863] gi|327255167|gb|EGE66770.1| tRNA(Ile)-lysidine synthase [Escherichia coli STEC_7v] Length = 431 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 152/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PSVILRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEISEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|325496120|gb|EGC93979.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ECD227] Length = 431 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 152/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PSVILRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L +L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I] gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I] Length = 417 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 160/382 (41%), Gaps = 17/382 (4%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR RS + PA + +A+SGG DSM L+ LH G+++ A +VDH LR + D Sbjct: 12 VRSQFRSAL-PAKLGIALSGGGDSMALMHLLHDCF---GSGEVQLFAATVDHGLRPGSAD 67 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +RL I H V+ W + L A AR ARY L+ A+ ++ HT Sbjct: 68 EAAAAGAAAARLGIPHEVLHWADRPQDGNLQAQARAARYELLCGWARQHGIPVLALGHTA 127 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV MR R GLSGM + + + RP L R ++R +L R + W Sbjct: 128 DDQAETVLMRMARASGV--TGLSGMAARRTH-KGVTLLRPLLDVTRSELRRYLEARGVDW 184 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLT 243 EDPSN D RFERVRVR+ + + L + + R ++ V + Sbjct: 185 AEDPSNEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYVFLAARDLAH 244 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 V +++ + + + LL + G P ME+ + ++G ++ Sbjct: 245 VQAGAVVLCQRKFRTLPVEISHRLLVRAVQWVSGAAYPPRRVPMEKAVQAARNGSSATLA 304 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +V + +W+ R + + P + +WDGR++ ++ + Sbjct: 305 GCHLVSTAKQ--VWVCREYNAVNGVTALPGQ--LWDGRWKIFGGDAKGCEVRALGRQGLA 360 Query: 364 V-PSGIPPIIAQRALSSMPSKE 384 P + L P+ Sbjct: 361 QCPDWRATGVPGPVLEGTPAVW 382 >gi|324014127|gb|EGB83346.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 60-1] Length = 437 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V++ Sbjct: 7 RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + + V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQGPLGVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|309700396|emb|CBI99684.1| tRNA(Ile)-lysidine synthase [Escherichia coli ETEC H10407] Length = 432 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 87/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADTWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I + R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMMTMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWLQPLELPAGLGSVQLTAGVDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|183597578|ref|ZP_02959071.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827] gi|188023075|gb|EDU61115.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827] Length = 450 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 132/351 (37%), Gaps = 27/351 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L P + + + + ILV SGG DS LL AL+ + ++ AI + H Sbjct: 1 MALQPQAIIEQVLNKIGHFRKILVGFSGGVDSTVLLHALYQI-KKYQLPSLEIRAIHIHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A D + +C + I G+ AAAREARY Sbjct: 60 GLNVRADDWEAHCQHLCEQWHIPFVCTHVTVDPSNRGIEAAAREARYQAYRNELAE--GE 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179 +I TA DDQ ET + +R G+ + W+ RP L R D+ + Sbjct: 118 IIATAQHLDDQAETFMLALKRGSGPAGLSSMPELSPFYAEKGETWLLRPLLAISRGDLEN 177 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM--- 236 + + ++W ED SN DDR++R +R + + L + F + + A Sbjct: 178 YAREYPLTWVEDDSNQDDRYDRNFLRIHI----MPTLTERWPHFAAAVSRSASLCAEQES 233 Query: 237 LIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 L+ + L + ++ ++ + LLR + ++ +P Y ++R+ Sbjct: 234 LLDELLQDALDEMMDYRGGLFIDNLHDCSPAKRNALLRRWVGL--HRLPMPPYHQLQRIW 291 Query: 292 L---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339 + +G V I R LWI R + L + WD Sbjct: 292 QEVALARQDAEPICQLGHVDIRRYQGALWIVRRINPL------LGQQFCWD 336 >gi|307136788|ref|ZP_07496144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli H736] gi|331640642|ref|ZP_08341790.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H736] gi|331040388|gb|EGI12595.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli H736] Length = 432 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + Q ++ W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 SQ L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SSQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|238893184|ref|YP_002917918.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238545500|dbj|BAH61851.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 433 Score = 266 bits (680), Expect = 6e-69, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 169/432 (39%), Gaps = 48/432 (11%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +LVA SGG DS LL L + + A+ V H L A D V + Sbjct: 6 AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V ++ G+ A AR ARY + +++TA DDQ Sbjct: 64 CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +R GLS M + + + + RP L RE +R + L +SW ED Sbjct: 122 ETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 178 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN DD ++R +R V + L + F + + + A L+ + L + S+ Sbjct: 179 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 234 Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +A + ++ LLR A Q +P ER+ + C Sbjct: 235 VAEDGSLAIAPLASMSPPRRAALLRRWLA--RQQAPMPAREVPERLWHEVALAREDASPC 292 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +G + R L+ + + + W Q L+D L ++ Q + Sbjct: 293 LRLGEFTVRRFQQRLYWVKYLPGQTDSVQR------WPDWRQPLRLADGLGELTLQPGGR 346 Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406 PS P+ + RA + + GG+ L +AP+ R T + P+A Sbjct: 347 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTTPLLFYGETPIAA 406 Query: 407 A---FSISFGKV 415 A F + G+V Sbjct: 407 ADDLFVTTEGEV 418 >gi|300920126|ref|ZP_07136579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1] gi|300412860|gb|EFJ96170.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1] Length = 432 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADTWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC R ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCKRWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I + R +A + G +P ++ R+ + C+ + Sbjct: 236 TPQGTLQIAPMMTMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWLQPLELPAGLGSVQLTAGVDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|293418073|ref|ZP_06660695.1| tilS [Escherichia coli B185] gi|291430791|gb|EFF03789.1| tilS [Escherichia coli B185] Length = 431 Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPCEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|240851214|ref|YP_002972617.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup] gi|240268337|gb|ACS51925.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup] Length = 495 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 112/412 (27%), Positives = 182/412 (44%), Gaps = 56/412 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + F + +++AVSGGSDS+ L+ + L S + ++VDH LR+ Sbjct: 5 LARNLFKTSDFIQCQKLILAVSGGSDSLALMFLVKEHLETLSVPP-EMIVVTVDHQLRKE 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + EV V+ +C I H V W+ KP+T + ++AR ARY L+ + A+ A++IMT Sbjct: 64 STREVETVAKICRVHHIKHIAVRWEGEKPKTHIASSARVARYDLLVKEAQKQGASVIMTG 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGM------------------------------------- 148 HT +DQ+ET MR QR +G Sbjct: 124 HTLNDQVETYQMRYQRLQKNRGALHGEVGAMRDEVYSSGFAGVLRGEADGIRDENHAREI 183 Query: 149 ---------------GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 GLS + L + + RP L +R+ +R++L + +W +DP+ Sbjct: 184 RKKITKKNDSPLYERGLSCIPREALLHRKVRLIRPLLGVKRQTLRNYLRLQGQTWIDDPT 243 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIA 251 N D FERVRVR+ + L + K+ + R + N +++ +TV H R IA Sbjct: 244 NEDRNFERVRVRQSLHPEKLAYIAQKINEAALQRRQQAKNIADLILALDITVQHGRCFIA 303 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVID 310 L S+ F + + + GG LP + SM L L S ++ + VI+ Sbjct: 304 KPALFLQKHSSFPFVVGLFAVLMGGGFYLLPNQKLSMLVQKLCLDSVEKKRFTYAGSVIE 363 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 + + + R RN+ I+ P++T +WDGRYQ N I+IG + + Sbjct: 364 YNKHGISLWREGRNMKEAIVEPDKTFIWDGRYQITNHGSKAIKIGAANLEQL 415 >gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Stappia aggregata IAM 12614] gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Stappia aggregata IAM 12614] Length = 461 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 99/406 (24%), Positives = 160/406 (39%), Gaps = 24/406 (5%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P V L +++ +AVSGGSDS+ LL+ L R+ + + VDH LR Sbjct: 19 PANRVDALFSPLSSFSNLALAVSGGSDSLCLLV-LFDEWRKRTGWQGAAEVLCVDHQLRP 77 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + E +V+ + +V+ W KP + AR ARY L++ + A ++ Sbjct: 78 ESGQEAEFVAMNARACGLDCTVLRWSGDKPSANVQEEARLARYRLMAGRMRDTEAEALVL 137 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DDQ ET R R G+ D L + RP L + D+ + L QR Sbjct: 138 GHHLDDQAETFLDRLTRGSGVSGLSGMA-ADEGCGPEGLRLLRPLLSVSKSDLIAALEQR 196 Query: 185 NISWCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 WC DPSN + +++R R+R + + L + R + V L Sbjct: 197 GRPWCTDPSNRNPKYKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTVEDLAA 256 Query: 240 KYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + +T H + + + + LL A G++S P ++ + L SG Sbjct: 257 RLVTEHPAGPVRLDRYAYRTLAEEFRLRLLVYLLARVSGKVSRPRLAKLQALDRVLISGV 316 Query: 299 RGCVSIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY------QFQNLSDSL 351 + + V D A+ + + + R PT++ T WDGRY + D+ Sbjct: 317 QNRQTFQGSVFDADADTIRVWKEAGRTPPTVVTGLAGTGTWDGRYLYRAPERVTGEGDAP 376 Query: 352 IQIG-----PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAP 392 + +G P S R+ D P G P A P ++ P Sbjct: 377 LCLGPLTSAPVSRREIDWPEGWPKA----AFDCAPVLWRAGEIVVP 418 >gi|301646513|ref|ZP_07246387.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1] gi|301075266|gb|EFK90072.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1] Length = 432 Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + Q ++ W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|16128181|ref|NP_414730.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89107068|ref|AP_000848.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. W3110] gi|170079824|ref|YP_001729144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238899586|ref|YP_002925382.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952] gi|256025500|ref|ZP_05439365.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 4_1_40B] gi|300949778|ref|ZP_07163753.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1] gi|300956073|ref|ZP_07168397.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1] gi|301028683|ref|ZP_07191903.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1] gi|1708989|sp|P52097|TILS_ECOLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|971394|emb|CAA90751.1| mesJ [Escherichia coli] gi|1122208|dbj|BAA08428.1| YaeN [Escherichia coli W3110] gi|1552765|gb|AAB08617.1| hypothetical [Escherichia coli] gi|1786386|gb|AAC73299.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. MG1655] gi|4902929|dbj|BAA77863.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K12 substr. W3110] gi|47230786|tpd|FAA00003.1| TPA: tRNA-Ile lysidine synthetase [Escherichia coli] gi|169887659|gb|ACB01366.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr. DH10B] gi|238863712|gb|ACR65710.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952] gi|260450609|gb|ACX41031.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1] gi|299878282|gb|EFI86493.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1] gi|300317067|gb|EFJ66851.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1] gi|300450843|gb|EFK14463.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1] gi|315134878|dbj|BAJ42037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1] gi|315616327|gb|EFU96945.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 3431] gi|323939936|gb|EGB36134.1| PP-loop family protein [Escherichia coli E482] gi|332341521|gb|AEE54855.1| tRNA(Ile)-lysidine synthetase TilS [Escherichia coli UMNK88] Length = 432 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + Q ++ W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3] gi|61216401|sp|Q5LNU7|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3] Length = 419 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 153/395 (38%), Gaps = 21/395 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S P + VAVSGG DS+ L+ L G++K +VDH LR + E V+ Sbjct: 19 SAQPPRRLGVAVSGGGDSVALMHLLARCFPR---GEVKLCVATVDHGLRSESASEAALVA 75 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + L + H + W + L AR ARY L+++ A T + AHT DDQ ET Sbjct: 76 RQAAGLGLPHETLLWTGWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAHTADDQAET 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + MR R G+ + + RP L R+ +R FL I+W EDPSN Sbjct: 136 LLMRLGRSAGVSGLAAMAPRRMQ---DGVVLVRPLLGITRDALRDFLRAEGIAWAEDPSN 192 Query: 195 TDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 D R++R++ R+ + ID L R ++ + + + Sbjct: 193 EDIRYDRIKARQALAGLAPMGIDAQRLAEVAANMARAREALDWYTFLAARDLTRIDGGDV 252 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + + + LL GG P ++ + L+ + +G +I Sbjct: 253 LLEPRGFRTLPDEIARRLLLHIVGWIGGGEYPPRRVAVAEALSALRHERS--SQLGGCLI 310 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQSYRKADVPS 366 + + R + + TL + + +WDGR+ + L +G + P Sbjct: 311 LGQGRRIRFCREWKAVETLTVP--QGALWDGRWVLRGPVVKDGELRALGAAGLK--LCPD 366 Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 AL + PS G L+ AP + + Sbjct: 367 WRQTGRPYAALIASPSVWSGADLVAAPLAGLANGW 401 >gi|331651093|ref|ZP_08352121.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M718] gi|331051547|gb|EGI23596.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli M718] Length = 432 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ ++ C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALVREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|323935028|gb|EGB31401.1| PP-loop family protein [Escherichia coli E1520] Length = 431 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|254714554|ref|ZP_05176365.1| hypothetical protein BcetM6_14687 [Brucella ceti M644/93/1] gi|254717451|ref|ZP_05179262.1| hypothetical protein BcetM_13811 [Brucella ceti M13/05/1] Length = 448 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 136/446 (30%), Positives = 201/446 (45%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGKP P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|209745664|gb|ACI71139.1| cell cycle protein MesJ [Escherichia coli] gi|320644764|gb|EFX13808.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. 493-89] gi|320652920|gb|EFX21158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. H 2687] gi|320668931|gb|EFX35726.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. LSU-61] Length = 431 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|291281010|ref|YP_003497828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli O55:H7 str. CB9615] gi|209745670|gb|ACI71142.1| cell cycle protein MesJ [Escherichia coli] gi|290760883|gb|ADD54844.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli O55:H7 str. CB9615] gi|320658308|gb|EFX26037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663618|gb|EFX30902.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. USDA 5905] Length = 431 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|82775579|ref|YP_401926.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae Sd197] gi|81239727|gb|ABB60437.1| cell cycle protein [Shigella dysenteriae Sd197] Length = 431 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVVLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKALGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|320639994|gb|EFX09579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. G5101] Length = 431 Score = 263 bits (673), Expect = 4e-68, Method: Composition-based stats. Identities = 91/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|209745668|gb|ACI71141.1| cell cycle protein MesJ [Escherichia coli] gi|326345091|gb|EGD68834.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1125] Length = 431 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGQGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5] gi|166988065|sp|A8F0E8|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5] Length = 477 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 98/467 (20%), Positives = 188/467 (40%), Gaps = 73/467 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRRFVRD-----------------------------------------IDLHALYL 218 R +R+ + + L A + Sbjct: 193 RRNVIRQKLAKGADYIRHRSKPAYREEFKGDTERSTAAYTSVGEEALLRGSILSLEAKFG 252 Query: 219 KMKKFQDLRVKV--NNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFYL 267 M K + ++ N + + L + + I + D++ D + + Sbjct: 253 TMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQI 312 Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNLP 326 + I GQ + S+E ++ + ++ +I R N L I R + LP Sbjct: 313 INFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKLP 372 Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386 + +++ +WD R+ ++ ++ + I + L ++ K Sbjct: 373 ESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLEDYKIIKKQLDLEPLKNLSCKNHN 430 Query: 387 KPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 LL P + + K +D + + F +SF F+ R F Sbjct: 431 AVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSRFTHF 476 >gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6] gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6] Length = 418 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 168/406 (41%), Gaps = 22/406 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VAVSGG DS+ LL L S ++ A +VDH LR+ + +E ++ ++V Sbjct: 20 PPPRVGVAVSGGGDSLALLHLLKSCFDG---EPVEILAATVDHGLRKESAEEAKWTAEVA 76 Query: 78 SRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + H V+ W++ +TG L AR ARY+L++ A+ ++ HT DDQ ETV Sbjct: 77 RGLGLRHEVLIWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTLGHTADDQAETVL 136 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G+ T+ + + RP L RRE +RS+L W +DPSN D Sbjct: 137 MRLSRAGGVNGLAGIPQRRTL---NGVTLLRPLLEVRREALRSYLRDEGHDWIDDPSNDD 193 Query: 197 DRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 RFERVR R+ + ++ + AL + R ++ V + +++ Sbjct: 194 SRFERVRFRKALENLAELGITVPALATVAQNMSKARKALDWHVFLAARDIARFEAGAMVF 253 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + + + LL+ + G M + ++ + G ++ I Sbjct: 254 DLRKFRTLPDEIAHRLLQQAIQWISGNPYPARRLPM--IEAAEQARRGGSATLSGCRIMS 311 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSDSLIQIGPQSYRKADVPSGI 368 R +W+ R + +WDGR++ L +G + ++ P Sbjct: 312 RKCGVWVCREFAAVEHSSAPSG--GIWDGRWRVFAGEFGQSELRPLGAEGMKQC--PEWR 367 Query: 369 PPIIAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPVAYAFSISFG 413 + L P+ GGK + AP + + + + F Sbjct: 368 SQNLPGPVLEVTPALWQGGKLIAAPLAGYAKGTTAELVNSEEEFFA 413 >gi|261344719|ref|ZP_05972363.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541] gi|282567161|gb|EFB72696.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541] Length = 453 Score = 263 bits (672), Expect = 5e-68, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 139/339 (41%), Gaps = 25/339 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S + + + ILV SGG DS LL AL+ + F ++ AI V H Sbjct: 1 MAKSSQIILEQILSKIGDHRKILVGFSGGIDSTVLLHALYQLKQSH-FPSLQVRAIHVHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + +++C + I G+ AAAR+ARY + + + Sbjct: 60 GLNMRADKWEMHCAELCEQWNIPFVCHHVTVDASNNGVEAAARDARYQAYRD--ELLQNE 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDI 177 +I+TA DDQ ET + +R GLS M ++ +D N ++ RP L R+++ Sbjct: 118 IIVTAQHLDDQAETFLLALKRGSGP--AGLSAMRESQPFDATRGNTYLLRPLLDISRQEL 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM- 236 ++ + + W ED SN DDR++R +R + + L + F + + + A Sbjct: 176 ERYMQEYALPWVEDDSNQDDRYDRNFLRLHI----MPRLSERWPHFANAVSRSASLCAEQ 231 Query: 237 --LIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 L+ + L + I+ ++ LLR + Q+ +P + +ER Sbjct: 232 ESLLDELLQDSLDEIVDYRGGLFIDGLVECSIAKRNALLRRWIKL--HQLPMPPFNQLER 289 Query: 290 VML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 + + +G I R LW+ R + ++ Sbjct: 290 IWQEVALARQDAEPICRLGDREIRRYQGALWVVRRINSV 328 >gi|15799870|ref|NP_285882.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 EDL933] gi|15829444|ref|NP_308217.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. Sakai] gi|168752171|ref|ZP_02777193.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113] gi|168758712|ref|ZP_02783719.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401] gi|168764949|ref|ZP_02789956.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501] gi|168769956|ref|ZP_02794963.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486] gi|168777704|ref|ZP_02802711.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196] gi|168782081|ref|ZP_02807088.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076] gi|168789298|ref|ZP_02814305.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869] gi|168802467|ref|ZP_02827474.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508] gi|195939884|ref|ZP_03085266.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. EC4024] gi|208806040|ref|ZP_03248377.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206] gi|208812463|ref|ZP_03253792.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045] gi|208818383|ref|ZP_03258703.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042] gi|209399704|ref|YP_002268796.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115] gi|217324422|ref|ZP_03440506.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588] gi|254791321|ref|YP_003076158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. TW14359] gi|261226942|ref|ZP_05941223.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261255346|ref|ZP_05947879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. FRIK966] gi|61216683|sp|Q8X8W8|TILS_ECO57 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12512916|gb|AAG54490.1|AE005194_11 cell cycle protein [Escherichia coli O157:H7 str. EDL933] gi|13359646|dbj|BAB33613.1| cell cycle protein MesJ [Escherichia coli O157:H7 str. Sakai] gi|187767122|gb|EDU30966.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196] gi|188013918|gb|EDU52040.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113] gi|189000414|gb|EDU69400.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076] gi|189354503|gb|EDU72922.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401] gi|189361024|gb|EDU79443.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486] gi|189365138|gb|EDU83554.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501] gi|189371100|gb|EDU89516.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869] gi|189375538|gb|EDU93954.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508] gi|208725841|gb|EDZ75442.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206] gi|208733740|gb|EDZ82427.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045] gi|208738506|gb|EDZ86188.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042] gi|209161104|gb|ACI38537.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115] gi|209745666|gb|ACI71140.1| cell cycle protein MesJ [Escherichia coli] gi|209745672|gb|ACI71143.1| cell cycle protein MesJ [Escherichia coli] gi|217320643|gb|EEC29067.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588] gi|254590721|gb|ACT70082.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. TW14359] gi|320190286|gb|EFW64936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. EC1212] gi|326339757|gb|EGD63565.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1044] Length = 431 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ G AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + + + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G +P ++ R+ + C+ + Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L + + Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGQGSVQLNAGGDIRP 349 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|223041688|ref|ZP_03611884.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202] gi|198246543|gb|ACH82232.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202] Length = 423 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 92/403 (22%), Positives = 153/403 (37%), Gaps = 33/403 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 P LVA+SGG DS+ +L K+ A+ V H L A V + Sbjct: 19 FPRPPSFLVALSGGVDSVV-------LLHLLHRLKLPLRAVHVHHGLSPNADQWVAFCQH 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I V + + + G+ A ARE RY I E + +++TAH DDQ ET Sbjct: 72 YCQQQAIPLCVKYVQVNGKK-GIEAEAREKRYQTIRET--REHNEVVVTAHHLDDQAETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R KG+ + + I RP L + DI ++ +N+SW ED SN Sbjct: 129 LLALKRGSGVKGLSAM---QAVNFSQKFPIFRPLLAVSKNDILAYAQSQNLSWIEDESNQ 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLTVHMRS 248 ++R +R V L L + ++F + + +A + L + Sbjct: 186 STDYDRNFLRHKV----LPVLNEQWEQFNRMVARSCEHLAHQQQLLDELLSEELAKYKDG 241 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 + QD + LLR+ + Q+ +P +E++ ++ K K + +G Sbjct: 242 QTLVIQDFAGLTKIKQQALLRLW--LSEQQMLMPSTAQLEQIIQNIILAKEDKNPEIQLG 299 Query: 306 RVVIDRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 ++ R N L+IT V I E + +G Q D +I + Sbjct: 300 DKMLRRYQNRLFITPIYTPVATFSKEIQQQETIILPNGLGQVLRAKDKIIYQTAHKIDRL 359 Query: 363 DVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 + + L KE GK + K+ +PV Sbjct: 360 QLSEALQQEKLFVHLKYQGKIKEYGKTYHEEMKKIWQKYQIPV 402 >gi|261219282|ref|ZP_05933563.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1] gi|261322343|ref|ZP_05961540.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1] gi|260924371|gb|EEX90939.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1] gi|261295033|gb|EEX98529.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1] Length = 453 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 135/444 (30%), Positives = 200/444 (45%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + I + L S EGGKP P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|254708440|ref|ZP_05170268.1| hypothetical protein BpinM_16175 [Brucella pinnipedialis M163/99/10] gi|254708707|ref|ZP_05170518.1| hypothetical protein BpinB_00311 [Brucella pinnipedialis B2/94] gi|256030233|ref|ZP_05443847.1| hypothetical protein BpinM2_06231 [Brucella pinnipedialis M292/94/1] gi|256160408|ref|ZP_05458097.1| hypothetical protein BcetM4_15479 [Brucella ceti M490/95/1] gi|256255614|ref|ZP_05461150.1| hypothetical protein BcetB_15298 [Brucella ceti B1/94] gi|260167908|ref|ZP_05754719.1| hypothetical protein BruF5_05982 [Brucella sp. F5/99] gi|261757346|ref|ZP_06001055.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella sp. F5/99] gi|261737330|gb|EEY25326.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella sp. F5/99] Length = 448 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|283835250|ref|ZP_06354991.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220] gi|291068961|gb|EFE07070.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220] Length = 430 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 33/397 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS LL L + ++ AI + H L A V++ VC++ + Sbjct: 16 ILVAFSGGLDSTVLLHQLVLWRAQ--HPQVALRAIHIHHGLSPHADGWVQHCESVCAQWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V G+ A AR ARY ++ + ++MTA DDQ ET + +R Sbjct: 74 VPLVVERVHLEDDGLGIEAQARRARYQAFAQTL--LPGEVLMTAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G + RP L RE + + Q + W ED SN DD ++R Sbjct: 132 GSGPAGLSAMGERSPF---AGTQLIRPLLAQTREALEGWARQHQLCWIEDESNQDDAYDR 188 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R V + L + + + L+ + L + + + +Q L + Sbjct: 189 NFLRLRVTPL-LQQRWPHFAQATARSAALCAEQESLLDELLASDLANCV-TAQGTLLLAP 246 Query: 262 TLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314 ++ +R +A + G +P ++ER+ + C +G I R + Sbjct: 247 LMMMSDVRRAALLRRWLAGLHAPMPSRDALERIWQEVALAREDASPCFRLGGFDIRRYQS 306 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ 374 LW + V ++ W L L + + +P P+ + Sbjct: 307 QLWWVKPVDGHSETVIP------WSCWQTPLTLPAGLGSVQLTPAGELRMPQADEPVSIR 360 Query: 375 ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 L + + GG+ L + P+ R T Sbjct: 361 FKASGLLHIVGRSGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|110635497|ref|YP_675705.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium sp. BNC1] gi|110286481|gb|ABG64540.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1] Length = 446 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 138/421 (32%), Positives = 204/421 (48%), Gaps = 27/421 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ AVSGG DS+ LL L L +R A++VDH LR + E R V ++ + Sbjct: 25 VVAAVSGGGDSLALLFLLQDFL-ERQPSGPSLLAVTVDHGLRPDSATEARAVGELAAARG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 IAH + W+ +KP+ G+ AAAREAR AL++ A+ L+ TAHT DDQ ET+ MR Sbjct: 84 IAHRTLRWEEAKPKAGISAAAREARLALLARAAREAGTDLVFTAHTADDQAETLAMRL-- 141 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G G +G+ L++ ++W +RP L RR +R++L +R ISW EDPSN D RFER Sbjct: 142 -SRGGGRGAAGIAPATLFEGDVWFTRPLLHTRRAALRTYLGERGISWFEDPSNRDPRFER 200 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 RVR + + AL + + Q LR + A A LI T ++ + + + Sbjct: 201 ARVRACLDEDRTQALLAEAENAQRLRQEQGRAAADLIGSAATRVAPGLLRFALAAASEEK 260 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 L Y LR+ A+ GG L ++ +R VS+ R V+ R+ ++L++ R Sbjct: 261 GGL-YALRIVLAVAGGSPHLADEARSAALLRRALEDERCRVSLSRAVVTRKRDWLYLHRE 319 Query: 322 VRNLPTLILYPEETTVWDGRYQF----QNLSDSLIQIGPQSYRKADVPSGI-PPIIAQRA 376 RNLP L E+ +WDGRY+ Q + GP + DV P + + A Sbjct: 320 RRNLPETSLSGEQ--IWDGRYRLVPAGQLKGACVAAFGPANAAARDVAEAEAPAGLLRSA 377 Query: 377 LSSMPSKEGGK---------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLP 421 L++ P+ G L P++R + FDL A A P LP Sbjct: 378 LAAEPAIWRGDLCLGLASDMEGLVLQRLAQPWARLLPSFDLAPASALLELLNGSVPPILP 437 Query: 422 F 422 F Sbjct: 438 F 438 >gi|148981150|ref|ZP_01816312.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3] gi|145960977|gb|EDK26302.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3] Length = 443 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 137/341 (40%), Gaps = 23/341 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F +S + P ++VA SGG DS LL I AI V H L + A Sbjct: 12 FDQSAIKPHRLVVAFSGGVDSRVLLELAAQYTKTHE---IDCQAIHVHHGLSDNADQWAE 68 Query: 72 YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C L + +V + + + AR+ARY H + +++T DD Sbjct: 69 QCQVWCDDLSVPLAVERVSLDVRSGESIEKLARDARYNAFKSHLRQ--GDVLVTGQHVDD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET + +R KG LS M + + I RP L R +I +F + ++W E Sbjct: 127 QVETFLLALKRGSGPKG--LSSMAKVMPF-SGAHIVRPMLSVTRAEIEAFARRMGLTWVE 183 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D RF+R +R V + L + ++ ++ ML+ + L H++ + Sbjct: 184 DESNQDVRFDRNFIRHQVTPL-LTERWPSFRESVSRSAQLCAEQEMLLDELLASHLQRAL 242 Query: 251 AISQDI----LNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302 Q + L+ S LL LLR+ C Q ++P + ++ + + + Sbjct: 243 GDDQSLSVEVLSEQSALLRARLLRMWLGHC--QQAMPSQKQLQLIWEEVACAQRDANPKL 300 Query: 303 SIGRVVIDRRANFLWITRAVRNL---PTLILYPEETTVWDG 340 + + R L++ R ++L I + DG Sbjct: 301 MLNGAEVRRFNEKLYLVRETKDLSGWQGEISVGGRLLLPDG 341 >gi|313646751|gb|EFS11210.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T] gi|333010683|gb|EGK30116.1| tRNA(Ile)-lysidine synthase [Shigella flexneri VA-6] Length = 416 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 145/396 (36%), Gaps = 37/396 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A SGG DS LL L ++ + AI V H L A V + +VC + ++ Sbjct: 2 AFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHCENVCQQWQVPL 59 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 60 VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GLS M + + + RP L R ++ + L + W ED SN DD ++R + Sbjct: 118 P--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDESNQDDSYDRNFL 174 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262 R V + L + F + + A + + SQ L I Sbjct: 175 RLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQTSQGTLQIAPM 230 Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315 L R +A + G +P ++ R+ + C+ +G I R + Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQ 290 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374 LW ++V I+ +W Q L L + + P + + Sbjct: 291 LWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRPPRADEAVSVRF 344 Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 L + + GG+ L + P+ R T Sbjct: 345 KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380 >gi|260914165|ref|ZP_05920638.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325] gi|260631798|gb|EEX49976.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325] Length = 435 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 136/321 (42%), Gaps = 28/321 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DS LL+ + +R ++ AI + H L A + +C + Sbjct: 18 KQFLIGFSGGLDSTALLLLFTKLRENR--PHLQMRAIHIHHGLSANADSWTEHCKQICEQ 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + G+ A AREARY IS+H + ++ TAH DQ ET ++ Sbjct: 76 LNVPLIIEKVRV-DTCNGIEAGAREARYQAISQHI--LPDEILATAHHLQDQTETFFLAL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R +G+G + T+ NL + RP L R ++ F+ + W ED SN D+R+ Sbjct: 133 KRGSGLQGLGAMQLQSTV---YNLPVFRPLLHFTRPELEQFVQATKLDWVEDESNRDNRY 189 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS------ 253 ER +R + L L + F DL V+ + + + + A + Sbjct: 190 ERNFLRNEI----LPELRQRWAHF-DLAVQRSAQHCFEQQQLINELLADEFAQNFDKTDR 244 Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306 Q +T LLR+ + Q+ +P +E+++ +F +S +G Sbjct: 245 SFSIQQFAQYSATKQKALLRLW--LNEWQLPMPSLVQLEQIIQDVIFARSDSNPLFQLGE 302 Query: 307 VVIDRRANFLWITRAVRNLPT 327 V+ R L++T ++ T Sbjct: 303 KVVRRHQQKLYLTPQFTDIST 323 >gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa] gi|166988066|sp|A8GQJ7|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189035969|sp|B0BVY4|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa] Length = 478 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 183/468 (39%), Gaps = 74/468 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226 R +R F + + ++ Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTSVREDASTGTASKLSLEAKC 252 Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266 ++K N + L + + I + D++ D + Sbjct: 253 GKMSKAAIISQQLKTNKRIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325 ++ I GQ + S+E ++ + ++ +I R N L I R + L Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385 P + +++ +WD R+ ++ ++ I + L ++ K Sbjct: 373 PESKILLDKSVIWDNRFCITKNQEAPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430 Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 LL P + + K +D + + F +SF F+ R F Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477 >gi|256370101|ref|YP_003107612.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915] gi|256000264|gb|ACU48663.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915] Length = 448 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 135/448 (30%), Positives = 201/448 (44%), Gaps = 38/448 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 +++ +I+R R RNLP L L P + VWDGR+ F N Sbjct: 298 --QDAPRRLTVFGALIERGEKGTPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355 Query: 352 IQIGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP-------------- 392 +I P ++ + I + L S EGGK P Sbjct: 356 FEIAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIE 415 Query: 393 -----FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 416 RHFAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|317047001|ref|YP_004114649.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b] gi|316948618|gb|ADU68093.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b] Length = 433 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 30/364 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LS + ++ L A ++A SGG DS LL L +++ A+ V H Sbjct: 1 MSLSHLAAL------LTPDARCVLAFSGGLDSTVLLHQLVCWRQQ--HPQMQLRALHVHH 52 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + +C + I V+ + + G+ AAAR+ARY + +H + Sbjct: 53 GLSPNADSWAAHCQHLCQQWHIPCEVLRVRVDGREQGIEAAARDARYQALLQHLQP--GE 110 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TA DDQ ET+ + +R GL+ M + N + RP L R+ + S+ Sbjct: 111 HLLTAQHLDDQCETLLLALKRGSGP--AGLAAMPSQRILGENTHL-RPLLALSRQQLESW 167 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 Q +SW ED SN D R++R +R+ V + L A + + L+ + Sbjct: 168 AAQHQLSWIEDESNADCRYDRNFLRQQVLPL-LQARWPHFSAAAARSAALCGEQEQLLDE 226 Query: 241 YLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---ML 292 L + + +L + LLR A GG ++P ++ R+ ++ Sbjct: 227 LLAEQLAQLTDKQGRLNFTPLLAMQEARRHALLRRWIAGQGG--TMPSRDALLRITREVM 284 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 + + C+ G + R L+ LP+ + + W R Q L +SL Sbjct: 285 HSREDAQPCLHFGAFELRRYRQQLYW------LPSQPSLSQHSLTWHDRSQPLPLPESLG 338 Query: 353 QIGP 356 ++ Sbjct: 339 ELQA 342 >gi|62290564|ref|YP_222357.1| hypothetical protein BruAb1_1677 [Brucella abortus bv. 1 str. 9-941] gi|82700480|ref|YP_415054.1| hypothetical protein BAB1_1704 [Brucella melitensis biovar Abortus 2308] gi|148560003|ref|YP_001259546.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840] gi|189024784|ref|YP_001935552.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19] gi|254689861|ref|ZP_05153115.1| hypothetical protein Babob68_06777 [Brucella abortus bv. 6 str. 870] gi|254694354|ref|ZP_05156182.1| hypothetical protein Babob3T_06787 [Brucella abortus bv. 3 str. Tulya] gi|254698012|ref|ZP_05159840.1| hypothetical protein Babob28_09973 [Brucella abortus bv. 2 str. 86/8/59] gi|254700354|ref|ZP_05162182.1| hypothetical protein Bsuib55_05789 [Brucella suis bv. 5 str. 513] gi|254730896|ref|ZP_05189474.1| hypothetical protein Babob42_06812 [Brucella abortus bv. 4 str. 292] gi|256258115|ref|ZP_05463651.1| hypothetical protein Babob9C_12379 [Brucella abortus bv. 9 str. C68] gi|260547191|ref|ZP_05822929.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038] gi|261214662|ref|ZP_05928943.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 3 str. Tulya] gi|297248964|ref|ZP_06932672.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196] gi|75496348|sp|Q57BI8|TILS_BRUAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123547188|sp|Q2YQH6|TILS_BRUA2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988057|sp|A5VS49|TILS_BRUO2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695537|sp|B2S7D1|TILS_BRUA1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62196696|gb|AAX74996.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616581|emb|CAJ11660.1| Protein of unknown function UPF0021 [Brucella melitensis biovar Abortus 2308] gi|148371260|gb|ABQ61239.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840] gi|189020356|gb|ACD73078.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19] gi|260095556|gb|EEW79434.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038] gi|260916269|gb|EEX83130.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 3 str. Tulya] gi|297174097|gb|EFH33454.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196] Length = 448 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|306815213|ref|ZP_07449362.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101] gi|305850875|gb|EFM51330.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101] Length = 421 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 144/396 (36%), Gaps = 37/396 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A SGG DS LL L ++ + AI V H L A V++ ++C + ++ Sbjct: 2 AFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHCENICQQWQVPL 59 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 60 VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GLS M + + + RP L R ++ + L + W ED SN DD ++R + Sbjct: 118 P--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDESNQDDSYDRNFL 174 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262 R V + L + F + + A + + Q L I Sbjct: 175 RLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQTPQGTLQIAPM 230 Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315 L R +A + G +P ++ R+ + C+ +G I R + Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQ 290 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374 LW ++V I+ W Q L L + + P + + Sbjct: 291 LWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPPRADEAVSVRF 344 Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 L + + GG+ L + P+ R T Sbjct: 345 KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380 >gi|225853148|ref|YP_002733381.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457] gi|256045303|ref|ZP_05448197.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256114261|ref|ZP_05455006.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 3 str. Ether] gi|256263360|ref|ZP_05465892.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9] gi|260565805|ref|ZP_05836288.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M] gi|61216690|sp|Q8YIV0|TILS_BRUME RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|254789035|sp|C0REV5|TILS_BRUMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225641513|gb|ACO01427.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457] gi|260151178|gb|EEW86273.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M] gi|263093359|gb|EEZ17428.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9] gi|326409706|gb|ADZ66771.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M28] gi|326539413|gb|ADZ87628.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M5-90] Length = 448 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75498061|sp|Q5GTD2|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, MesJ [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 431 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 139/355 (39%), Gaps = 15/355 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 VY + VAVSGG DS+ LL + S R A++V+H LR +++EV +V Sbjct: 16 VYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPP--IALAVNHGLRPESQEEVEFVVSY 73 Query: 77 CSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + +++WK + + + AR+ARY L++E K + + AH DDQ ET Sbjct: 74 AKELGVKKSFILNWKRQNIKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETF 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R +R G+ ++ + + RP L R I+ + + W ED SN Sbjct: 134 LLRLERGSGLDGLSSMDYKSSL---NGVCMLRPLLSFSRSRIKKYADFYRLKWVEDRSNQ 190 Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 +++R R ++ +I + L + + + + + VH I Sbjct: 191 SLKYKRTLYRNLLKASGNQEILTERICLTTLHIKRATKALMHYTRLAFNDCVNVHDLGYI 250 Query: 251 AISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGRVV 308 I + + + LL S + + P Y S+ + L+ ++ Sbjct: 251 EIKLSEFYKLPEEIALRLLLYSIMVISSKHYKPRYNSLIAIFNKVLQKDNDVHCTLSGCK 310 Query: 309 IDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 I + + I R + + L WD R+ L + + +K Sbjct: 311 IRKYGESILIIRESSKIQEISVSLPLNAPIEWDNRFSCTILGNQECSVTIAPLKK 365 >gi|294850945|ref|ZP_06791621.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026] gi|294821588|gb|EFG38584.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026] Length = 448 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNVDCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|28374025|pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli Length = 433 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 89/407 (21%), Positives = 148/407 (36%), Gaps = 37/407 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 65 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 66 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 123 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS + + + RP L R ++ + Q ++ W ED S Sbjct: 124 TFLLALKRGSGP--AGLSAXAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 180 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 181 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 236 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304 Q L I L R +A + G P ++ R+ + C+ + Sbjct: 237 SPQGTLQIVPXLAXSDARRAAIIRRWLAGQNAPXPSRDALVRIWQEVALAREDASPCLRL 296 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 G I R + LW ++V I+ W Q L L + + Sbjct: 297 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 350 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 351 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 397 >gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7] gi|20140671|sp|Q92JK0|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7] Length = 478 Score = 259 bits (663), Expect = 5e-67, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 184/468 (39%), Gaps = 74/468 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226 R +R F + + ++ Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTLVREDASTGTASKLSLEAKC 252 Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266 ++K N + L + + I + D++ D + Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325 ++ I GQ + S+E ++ + ++ +I R N L I R + L Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385 P + +++ +WD R+ ++ ++ I + L ++ K Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430 Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 LL P + + K +D + + F +SF F+ R F Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477 >gi|254719695|ref|ZP_05181506.1| hypothetical protein Bru83_09158 [Brucella sp. 83/13] gi|306837846|ref|ZP_07470708.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653] gi|306407085|gb|EFM63302.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653] Length = 448 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 134/446 (30%), Positives = 199/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ + D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLDADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + + + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|225628261|ref|ZP_03786295.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo] gi|261222817|ref|ZP_05937098.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94] gi|261315940|ref|ZP_05955137.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10] gi|261316198|ref|ZP_05955395.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94] gi|265987261|ref|ZP_06099818.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1] gi|265998776|ref|ZP_06111333.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella ceti M490/95/1] gi|225616107|gb|EEH13155.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo] gi|260921401|gb|EEX88054.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94] gi|261295421|gb|EEX98917.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94] gi|261304966|gb|EEY08463.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10] gi|262553465|gb|EEZ09234.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella ceti M490/95/1] gi|264659458|gb|EEZ29719.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1] Length = 453 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + I + L S EGGK P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246] gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246] Length = 478 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 99/468 (21%), Positives = 185/468 (39%), Gaps = 74/468 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERV-----------RVRRFVRDIDLHA----------------------------LYLKM 220 R +R F + + L K Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSIAAYTVVCEDASTGTASKLSLEAKC 252 Query: 221 KKFQDL-----RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266 K ++K N + L + + I + D++ D + Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325 ++ I GQ + S+E ++ + ++ +I R N L I R + L Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385 P + +++ +WD R+ ++ ++ I + L ++ K Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430 Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 LL P + + K +D + + F +SF F+ R F Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477 >gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi] Length = 501 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 38/416 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL VAVSGG DS+ LL + ++ ++ + ++V+H R A E R+ Sbjct: 63 LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTVNHGFRAEADHETRF 120 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L + ++ W + + ARE RY+L+ + + ++TAH DQ Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M +R G LSGM + ++ ++ I RP L R++I + Q+ +SW EDP Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237 Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 SN D ++ R R + + + + L + + V + L Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297 Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 I + SQ++ ++ + LL +S GG+ P Y + ++ + G+ ++ Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357 Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345 + + + + I R + + T I ET WD R+ + Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417 Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396 N S+ + +P + + + S+P G +LA P+ Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQTH 472 >gi|237729494|ref|ZP_04559975.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2] gi|226909223|gb|EEH95141.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2] Length = 431 Score = 259 bits (662), Expect = 7e-67, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 142/392 (36%), Gaps = 25/392 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS LL L + ++ AI + H L A V++ VC + + Sbjct: 16 ILVAFSGGLDSTVLLHQLVQWRAQ--HPEVALRAIHIHHGLSPHADSWVQHCESVCMQWQ 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V G+ A AR ARY ++ + ++MTA DDQ ET + +R Sbjct: 74 VPLVVERVHLEDDGLGIEAQARRARYQAFAQTL--LPGEVLMTAQHLDDQCETFLLALKR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ G + RP L RE + ++ Q + W ED SN DD ++R Sbjct: 132 GSGPAGLSAMGENTPFA---GTQLIRPLLAQTREVLETWARQHELCWIEDESNQDDTYDR 188 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R V + L + + + L+ + LT + I +L + Sbjct: 189 NFLRLRVTPL-LQQRWPHFAQAVARSAALCAEQESLLDELLTSDLADCITAHGTLLLVPL 247 Query: 262 TLLFYLLRVSA---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315 ++ + R + + G +P +ER+ + C +G + R + Sbjct: 248 MMMSDVRRAALLRRWLAGLNAPMPSRDGLERIWQEVALAREDASPCFRLGEYEVRRYQSQ 307 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQR 375 LW ++V ++ E W S+ I R + Sbjct: 308 LWWVKSVDGQSETVIPWLE---WKTPLALPAGLGSVQLISAGELRMPQADEAVSIRFKAP 364 Query: 376 ALSSMPSKEGGKPL--------LAPFSRFMTK 399 L + + GG+ L + P+ R T Sbjct: 365 GLLHIVGRNGGRKLKKIWQEQGIPPWRRDTTP 396 >gi|256061730|ref|ZP_05451867.1| hypothetical protein Bneo5_15421 [Brucella neotomae 5K33] Length = 448 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 133/425 (31%), Positives = 197/425 (46%), Gaps = 18/425 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAF 408 I P ++ + I + L S EGGK PF + + P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPF---LPGAEWPQGVHI 414 Query: 409 SISFG 413 F Sbjct: 415 ERHFA 419 >gi|268590514|ref|ZP_06124735.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131] gi|291314100|gb|EFE54553.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131] Length = 450 Score = 259 bits (661), Expect = 9e-67, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 28/337 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILV SGG DS LL AL+ + R ++ AI + H L A + ++ + +CS+ Sbjct: 21 KILVGFSGGIDSTVLLHALYLIRQQR-LPSLEIRAIHIHHGLNRKANEWEQHCAQLCSQW 79 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I Q G+ AAAREARY E + +++TA DDQ ET + + Sbjct: 80 DIPFICRHVVVDSSQKGIEAAAREARYQAYREELQE--GEVLVTAQHLDDQAETFMLALK 137 Query: 141 RDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GLS M + + + + W+ RP L R + +++ ++ +SW ED SN DD Sbjct: 138 RGSGP--AGLSSMPELLSFSACCGSTWLLRPLLSTPRIALEAYMQEQQLSWVEDDSNQDD 195 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----I 252 R++R +R + L + + L+ + L + ++ Sbjct: 196 RYDRNFLRLHIMP-TLSERWPHFSHAVARSAALCAEQESLLDELLKETLEGMMDYRGGLF 254 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 D+ S+ L+R + Q+ +P + +ER+ + +G+ I Sbjct: 255 IDDLQGCSSSKRNALIRRWVGL--HQLPMPPFNQLERIWQEVALARQDADPICRLGQFEI 312 Query: 310 DRRANFLWITRAVRNL---------PTLILYPEETTV 337 R LW+ + + +L P I PE + Sbjct: 313 RRYQGALWVVKRINSLLNKQFEWAFPEAIELPESLGI 349 >gi|23502550|ref|NP_698677.1| hypothetical protein BR1692 [Brucella suis 1330] gi|61216663|sp|Q8FZ11|TILS_BRUSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23348550|gb|AAN30592.1| conserved hypothetical protein [Brucella suis 1330] Length = 448 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVKLARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035] gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035] Length = 418 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 153/393 (38%), Gaps = 16/393 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDS+ LL LH G +A++VDH LR T+ E V+ +C+ Sbjct: 21 PTRLGVAVSGGSDSLALLHLLHGWS---LVGGPTPAAVTVDHGLRPTSAQEAVDVAQICA 77 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RL I H V W+ L AR ARYAL+++ A+ + I HT DD ET MR Sbjct: 78 RLAIPHDTVRWQGWDGSGNLPDHARRARYALLTDWARANDLHDIAIGHTQDDVAETFLMR 137 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + RP L RE +R L + SW +DP+N D Sbjct: 138 LARGAGVDGLAAM---RPRWTQSGVTFHRPLLDLSREALRDHLRRLGQSWIDDPTNDDTT 194 Query: 199 FERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 + R R R+ + + L + +R +++A L V I+ Sbjct: 195 YLRPRARQSLMALAPMGLGAATLADVARTLSGVRTALDHATLTAARALLQVQSGDILIDH 254 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 ++ + L++ G+ P ++ + + G + G +++ + Sbjct: 255 PGFNDLPEEIARRLMQAMLQWLAGEEYPPRGTALASFIKAARDGHTMPLH-GCLLLPPKN 313 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPII 372 L +TR + L T+WD R+Q + ++I P + Sbjct: 314 GQLRLTREYAAVKGLRAP--VNTLWDNRWQASGPASPGVEIAALGPNGLQACPDWRQSGL 371 Query: 373 AQRALSSMPSKEGGKPLL-APFSRFMTKFDLPV 404 + P G L+ AP + L + Sbjct: 372 PHASALCAPGLWQGDTLIAAPLMGHPNGWALIL 404 >gi|161619622|ref|YP_001593509.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365] gi|163845272|ref|YP_001622927.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445] gi|254703471|ref|ZP_05165299.1| tRNA(Ile)-lysidine synthetase [Brucella suis bv. 3 str. 686] gi|260568779|ref|ZP_05839247.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40] gi|189035965|sp|A9M7J1|TILS_BRUC2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189035966|sp|A9WWG9|TILS_BRUSI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161336433|gb|ABX62738.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365] gi|163675995|gb|ABY40105.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445] gi|260154163|gb|EEW89245.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40] Length = 448 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + I + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|306841411|ref|ZP_07474113.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2] gi|306288517|gb|EFM59869.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2] Length = 448 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 133/446 (29%), Positives = 199/446 (44%), Gaps = 34/446 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LSP+ + F L ++ AVSGGSDS+GLL L LS A++VDH Sbjct: 1 MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPP-ALIAVTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V +C + I H ++SW + KP GL AAAR ARY L+ + A+ A Sbjct: 58 KLRAESALEAENVGLLCQKHGIMHRILSWDDPKPVHGLAAAARTARYRLLVQAARDAGAD 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALREE 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237 L +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293 P L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + +R V + + R RNLP L L P + VWDGR+ F N + Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357 Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392 I P ++ + + + L S EGGK P Sbjct: 358 IAPPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417 Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443 >gi|170768385|ref|ZP_02902838.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627] gi|170122489|gb|EDS91420.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627] Length = 431 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 84/408 (20%), Positives = 142/408 (34%), Gaps = 41/408 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L+ ILVA SGG DS LL L + + AI V H L A V + Sbjct: 8 HLLSSRQILVAFSGGLDSTVLLHQLVQWRMEN--PGVTLRAIHVHHGLSANADAWVMHCE 65 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ ET Sbjct: 66 NICQQWQVPLVVERVQLAEEGLGIEAQARQARYQAFAHTL--LPGEVLVTAQHLDDQCET 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G+ G + RP L R ++ + + + W ED SN Sbjct: 124 FLLALKRGSGPAGLSAMGEVSDFA---GTQLIRPLLARTRGELELWAHEHGLRWIEDESN 180 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252 DD ++R +R V + L + F + + A + + Sbjct: 181 QDDTYDRNFLRLHVVPL----LQQRWPHFTEATARSAALCAEQERLLDELLADDLAHCQT 236 Query: 253 SQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 SQ L I ++R A Q +P ++ R+ + C+ Sbjct: 237 SQGTLLITPMMTMSDARRAAIIRRWLAKLNAQ--MPSRDALVRIWQEVALAREDASPCLR 294 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 G I R + LW ++ I+ W Q L L + + Sbjct: 295 FGAFEIRRYQSQLWWIKSFVGQSETIVP------WQMWQQSLELPAGLGSVQLTAGGDIR 348 Query: 364 VPSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + L + + GG+ L + P+ R T Sbjct: 349 FPRADEAVSVRFKASGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396 >gi|237816070|ref|ZP_04595066.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A] gi|260755392|ref|ZP_05867740.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 6 str. 870] gi|260758613|ref|ZP_05870961.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 4 str. 292] gi|260762446|ref|ZP_05874783.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 2 str. 86/8/59] gi|260884408|ref|ZP_05896022.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68] gi|261750848|ref|ZP_05994557.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 5 str. 513] gi|237788733|gb|EEP62945.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A] gi|260668931|gb|EEX55871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 4 str. 292] gi|260672872|gb|EEX59693.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 2 str. 86/8/59] gi|260675500|gb|EEX62321.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella abortus bv. 6 str. 870] gi|260873936|gb|EEX81005.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68] gi|261740601|gb|EEY28527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 5 str. 513] Length = 453 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + I + L S EGGK P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36] gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36] Length = 419 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 101/412 (24%), Positives = 164/412 (39%), Gaps = 25/412 (6%) Query: 17 VYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 P +L VAVSGG DS+ LL L+ R I A +VDH LR A E V+ Sbjct: 15 PAPPPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAA 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L + H + W L AR+ARY L+++ A+ + HT DD ET Sbjct: 72 QCRALGVPHDTLRWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETF 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G+ I + RP L RR D+R+ L + ++W +DPSN Sbjct: 132 VMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNVRRADLRAHLTRCGVTWVDDPSNE 188 Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 DD F RVR+R+ + +D AL + D R ++ + + V ++ Sbjct: 189 DDSFARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQYGAVA 248 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 Q + + + LL + A G P ++ V+ L G ++ + Sbjct: 249 MDWQALCGLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTAL--DDAGAATVQGCELR 306 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 + + LWI R ++ + + + +WDGR++ + D+ Q+ +A G+ Sbjct: 307 LKRDKLWIYRELQAVRAVAAPAD--ALWDGRWRLEPCGDAPAPNT-QTTIRALGADGLRS 363 Query: 371 IIAQR--------ALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGK 414 R L+S +G + + AP + + F Sbjct: 364 FADWRDLGVPRGVLLASPAVWQGAELVAAPLVGRSQNWQAVLERGEDAFFAA 415 >gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida] gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico] gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia] gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida] Length = 501 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 38/416 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL VAVSGG DS+ LL + ++ ++ + ++V+H R A E R+ Sbjct: 63 LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTVNHGFRAEADHETRF 120 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L + ++ W + + ARE RY+L+ + + ++TAH DQ Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M +R G LSGM + ++ ++ I RP L R++I + Q+ +SW EDP Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237 Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 SN D ++ R R + + + + L + + V + L Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297 Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 I + SQ++ ++ + LL +S GG+ P Y + ++ + G+ ++ Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357 Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345 + + + + I R + + T I ET WD R+ + Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417 Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396 N S+ + +P + + + S+P G +LA P+ Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 472 >gi|265991728|ref|ZP_06104285.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1] gi|265995565|ref|ZP_06108122.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether] gi|262766849|gb|EEZ12467.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether] gi|263002684|gb|EEZ15087.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1] Length = 453 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + I + L S EGGK P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|261338814|ref|ZP_05966672.1| hypothetical protein ENTCAN_05009 [Enterobacter cancerogenus ATCC 35316] gi|288318637|gb|EFC57575.1| tRNA(Ile)-lysidine synthetase [Enterobacter cancerogenus ATCC 35316] Length = 428 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 145/401 (36%), Gaps = 37/401 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LV SGG DS LL L ++ AI V H L A + V + +C+ Sbjct: 14 RQLLVGFSGGLDSTVLLHRLMHWRD--REPDVQIRAIHVHHGLSPYADEWVAHCDALCAA 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V G+ A AR+ARYA + K ++TA DDQ ET + Sbjct: 72 WGIPLHVERVVLENEGLGIEAQARKARYAAFARALKP--GEALVTAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GLS M + +D + RP L R + ++ Q +SW ED SN DD + Sbjct: 130 KRGSGP--AGLSAMPERTAFD-GTELLRPLLGETRASLEAWAQQYQLSWIEDESNQDDSY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL 257 +R +R V L L + F + + A + L S + S L Sbjct: 187 DRNFLRLRV----LPLLTQRWGHFAEATARSAALCAEQETLLDELLSDALSDLTSSDGAL 242 Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 I +R +A + ++P + R+ + CV + + Sbjct: 243 AITPLESMTPVRRAALLRRWLAMHNAAMPSRAMLHRIWEEVAQAREDAAPCVYLNGFEVR 302 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 R LW ++ +L ++L W + L + + +P+ P Sbjct: 303 RYKGRLWWVKSTPSLTDVVLA------WPSPHDALELPYQRGTVSLTAPGHVRLPNADEP 356 Query: 371 IIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 357 VTVRFKASGVLHIVGRNGGRKLKKIWQENNVPPWLRDTTPL 397 >gi|240949808|ref|ZP_04754137.1| cell-cycle protein MesJ [Actinobacillus minor NM305] gi|240295725|gb|EER46420.1| cell-cycle protein MesJ [Actinobacillus minor NM305] Length = 423 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 155/399 (38%), Gaps = 33/399 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 LVA+SGG DS+ +L + K++ AI + H L A V + C + Sbjct: 23 KRFLVALSGGIDSVV-------LLYLLNQLKLELRAIHIHHGLSPNADQWVTFCQHYCQQ 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + + + G+ A ARE RY I E + +++TAH DDQ+ET + Sbjct: 76 HAIPLCVKYVQVNGKK-GIEAEAREKRYQAIREV--REHNEVVVTAHHLDDQVETFLLAL 132 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG+ + + N I RP L + DI ++ +N+SW ED SN + Sbjct: 133 KRGSGVKGLSAM---QVVNFSQNFPIFRPLLAISKNDILTYAKSQNLSWIEDESNQSTDY 189 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLTVHMRSIIAI 252 +R +R V L L + +F + + +A + L + + Sbjct: 190 DRNFLRHKV----LPVLNEQWTQFNRMVARSCEHLANQQQLLDELLCEELAKYRDGQTLV 245 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309 QD ++ LLR+ Q+ +P +E++ ++ K K + +G ++ Sbjct: 246 IQDFASLAKIKQQALLRLWF--SEQQMLMPSTVQLEQIIQNIILAKGDKNPEIQLGDKML 303 Query: 310 DRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 R N L+IT V IL E + + + D +I + + Sbjct: 304 RRYQNRLFITPIYTPVTAFSKEILQQETIILPNELGRLIRSKDEIIYQTAYKIDRLPLSE 363 Query: 367 GIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404 + L KE GK + K+ +PV Sbjct: 364 ALQQEKLFVHLKYQGKIKEDGKTYHEEMKKIWQKYQIPV 402 >gi|52424859|ref|YP_087996.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] gi|61216475|sp|Q65UE9|TILS_MANSM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52306911|gb|AAU37411.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] Length = 426 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 22/323 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL+A SGG DS LL + +R +F AI + H L A + ++C + Sbjct: 16 KILIAFSGGLDSTALLALCKKLQENR--PHFQFRAIHIHHGLSPNADKWALHCENICRQF 73 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V + K G+ A AREARY I+ H ++ TAH +DQ ET + + Sbjct: 74 SIPLIVEKVRVDK-SNGIEAGAREARYHAIANHLNI--DEVLATAHHLNDQTETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+ +++++ NL I RP L+ R + ++ + I+W ED SN D+ ++ Sbjct: 131 RGSGVQGLSAM-QKESVVF--NLPIFRPLLQFTRAQLEDYVKSQKINWIEDESNEDNSYD 187 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQDIL 257 R +R + L + + F + L+ + L + I + L Sbjct: 188 RNFLRNII----LPKMKTRWAHFDQAVYRAAQHCFEQTQLVNELLEDEFQKIFEKNDRTL 243 Query: 258 NIDSTLLFYLLR----VSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 ++ + ++ + + Q+++P + +E+++ +F K + VI Sbjct: 244 SVKLFDRYSYIKQKALLRLWLARLQLAMPSQKQLEQLIRDVIFAKPDAIPQFKLANQVIR 303 Query: 311 RRANFLWITRAVRNLPTLILYPE 333 R L++T +L + + + Sbjct: 304 RYQQKLYLTADFADLTDVAVPLK 326 >gi|265984710|ref|ZP_06097445.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13] gi|264663302|gb|EEZ33563.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13] Length = 453 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 133/444 (29%), Positives = 198/444 (44%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ + D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLDADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + + + L S EGGK P Sbjct: 365 PPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes scapularis] Length = 482 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 99/472 (20%), Positives = 189/472 (40%), Gaps = 78/472 (16%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L RE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192 Query: 200 ERVRVRR-------FVRDIDLHA------------------------------------L 216 R +R+ ++R + A L Sbjct: 193 RRNVIRQKLAKGEDYIRHLSKPAYREEFKGDTERSTAAYTSVRGEALLREDSSLGSTYKL 252 Query: 217 YLKMKKFQDL-----RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---T 262 L+ K ++K N + L + + + I + D++ D Sbjct: 253 PLEFGKMSKAEIILQQLKTNKLIEDKFKPELILAIAEAVKIFEYGFAFLDLVKFDKFLNE 312 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 + ++ + GQ + S+E ++ + ++ VI R N L I R Sbjct: 313 VKVQIINFLLIMISGQSRAARFYSVEPILKLITQEVNFKNTLHGCVIKRIQNELLIYREF 372 Query: 323 -RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMP 381 + LP + +++ +WD R+ ++L ++ + I + L ++ Sbjct: 373 GKKLPESKILLDKSVIWDNRFCITRNQETLNCF--VTHLLLEDYKIIKKQLDLEPLKNLS 430 Query: 382 SKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 K L P + + K +D + + F +SF F+ R F Sbjct: 431 CKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSRFTHF 481 >gi|325579079|ref|ZP_08149035.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC 33392] gi|325159314|gb|EGC71448.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC 33392] Length = 430 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 26/322 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+A SGG DS LL + + R + AI + H L A + +C + Sbjct: 17 KLLIAFSGGLDSTALLSLVKKLSEKR--PHLSLRAIHIHHGLSPNADTWTTHCQQLCEQF 74 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + K + G+ A AREARY I +H + ++TAH +DQ ET ++ + Sbjct: 75 AIPLIIEKVKV-EMHNGIEAGAREARYRAILKHIQP--DEYLVTAHHLNDQTETFFLALK 131 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G ++ L+ + I RP L R ++ ++ + +SW ED SN D+ ++ Sbjct: 132 RGAGLQGLGAM-QKESQLF--GMPILRPLLSFSRYELEDYVQRETLSWVEDESNQDNHYD 188 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ--- 254 R +R + L + + + F LI + L I Q Sbjct: 189 RNFLRNQI----LPEIRQRWRHFDHAVQHAAQHCFEQQQLINELLQTCFEQHILEDQKQF 244 Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308 + L LLR+ A QI++P + ++ + K+ +G + Sbjct: 245 SLVNFLEYSLQKQTTLLRMWLA--KNQIAMPTQVQLMHIIDDVIQAKADASPQFQLGEHI 302 Query: 309 IDRRANFLWITRAVRNLPTLIL 330 I R +L++T +L L Sbjct: 303 IRRYQQYLYLTGKFADLSKTCL 324 >gi|261325734|ref|ZP_05964931.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33] gi|261301714|gb|EEY05211.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33] Length = 453 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 132/423 (31%), Positives = 196/423 (46%), Gaps = 18/423 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410 P ++ + I + L S EGGK PF + + P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPF---LPGAEWPQGVHIER 421 Query: 411 SFG 413 F Sbjct: 422 HFA 424 >gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45] gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45] Length = 423 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 158/393 (40%), Gaps = 23/393 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGG DSM LL LH + + + A++VDH LR A E +V+ Sbjct: 25 PPRLGVAVSGGGDSMALLSLLHGLCAA---AGTQLEAVTVDHGLRPEAATEAAFVAHHAG 81 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + W+ Q L AAREARY L+++ A + I HT DDQ ETV MR Sbjct: 82 ALGLPHETLQWRGWDGQGNLQNAAREARYRLMADWAARRDLPCIALGHTADDQAETVLMR 141 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + RP L RRE +R +L + + W +DPSN D R Sbjct: 142 LARRSGVDGLSAM---APQSRRHGVTWLRPLLFARRESLRDYLRRAGLEWVDDPSNDDPR 198 Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 + R++ R+ + ID+ L R + L + +++ S Sbjct: 199 YARIQTRQSLAALDPLGIDVETLAEVASNMATARDALERQTERAAGDILRMEGGALVMRS 258 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + L+ + G P + ++ L G+ + + ++ R Sbjct: 259 EAFFAEPEEIRRRLMIRALGKISGSAYSPRRGPVAALIAGLAEGQAATLDGCQALVRR-- 316 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL-----IQIGPQSYRKADVPSGI 368 +W+ R + L + +WD R++ + +GP+ + P+ Sbjct: 317 GEIWLFREYNAVRDLRVPVNH--LWDKRWRAVPSGGAPEGAELRALGPEGLAQC--PNWR 372 Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + L S P+ G LL AP + K+ Sbjct: 373 SLGRPRAMLLSTPAIWQGAQLLAAPLAGLDEKW 405 >gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5] gi|259533753|sp|C3PM75|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5] Length = 478 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 184/468 (39%), Gaps = 74/468 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + Sbjct: 20 SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R Sbjct: 77 LNRKHYSLSFYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R+ G+ S + + N+ I RP + + +L++ NI W ED SN+ D++ Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSKLVEYLVRHNIKWFEDESNSSDKY 192 Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226 R +R F + + ++ Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTLVREDASTGTASKLSLEAKC 252 Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266 ++K N + L + + I + D++ D + Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325 ++ I GQ + + S+E ++ + ++ +I R N L I R + L Sbjct: 313 IINFLLIIISGQSRVARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385 P + +++ +WD R+ ++ ++ I + L ++ K Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430 Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423 LL P + + K +D + + F +SF F+ R F Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477 >gi|290473675|ref|YP_003466547.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004] gi|289172980|emb|CBJ79751.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004] Length = 449 Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats. Identities = 88/431 (20%), Positives = 163/431 (37%), Gaps = 33/431 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG----KIKFSAI 56 M + I + + L +LV SGG DS LL L + G +I+ AI Sbjct: 1 MINTHIPLLTMLIDQLGRHKKVLVGFSGGLDSTVLLHLLVQLRYQSHSGVIRDQIELRAI 60 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 + H L A V + +C+ ++ V Q G+ AAAR+ARY + Sbjct: 61 HIHHGLNPKADKWVEHCRQICADWKVDFRVEKVSLDIRQNGIEAAARDARYQAFQHELQQ 120 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +++TA DDQ ET + +R G+ + + + RP L R + Sbjct: 121 --GEILVTAQHLDDQAETFLLALKRGSGPAGL---SSMPSSMPFSGTTLIRPLLNASRAE 175 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + ++ + + W ED SN DDR++R +R + + L+ + + + Sbjct: 176 LETYAQTQRLQWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWPHFPQSASRSASLCGEQEQ 234 Query: 237 LIPKYLTVHMRSI------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 L+ + L + + IAIS +++ LLR G + +P ++++ Sbjct: 235 LLDELLNESLNELITPEGAIAISP-LVDCSEAKRNALLRRWFNQHG--VKMPAREQLQKI 291 Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE---ETTVWDGRYQF 344 + +G+ + R LW+ ++L +L + E + DG Sbjct: 292 WSEVALSRQDAEPRFRLGQHDVRRYRQQLWLVPQCQSLAGTLLEWDIAQELRLPDGLGML 351 Query: 345 QNLSDSLIQI-GPQSYRKADVPSGIP---PIIAQRALSSMPSKEGGKPLLAPFSRFMTK- 399 +S I + P + + G+ I+ +R + +AP+ R T Sbjct: 352 VLSEESGINVRMPDRNERVTIRFGVQGNISIVGRRHSRHSKKLW-QELGIAPWLRERTPL 410 Query: 400 --FDLPVAYAF 408 +D + A Sbjct: 411 LYYDEKLVAAL 421 >gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1] gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1] Length = 419 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 166/412 (40%), Gaps = 25/412 (6%) Query: 17 VYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 P +L VAVSGG DS+ LL L+ R I A +VDH LR A E V+ Sbjct: 15 PAPPPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAA 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L + H + W L AR+ARY L+++ A+ + HT DD ET Sbjct: 72 QCRALGVPHDTLMWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETF 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R G+ I + RP L RR D+R+ L QR ++W +DPSN Sbjct: 132 VMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNARRADLRAHLTQRGVTWVDDPSNE 188 Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 DD F RVR+R+ + +D AL + D R ++ + + V ++ Sbjct: 189 DDSFARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQCGAVA 248 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 Q + ++ + LL + A G P ++ V+ L G ++ + Sbjct: 249 MDWQALCDLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTAL--DDAGAATVQGCELR 306 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 + + LWI R ++ + + + +WDGR++ + D+ Q+ +A G+ Sbjct: 307 LKHDKLWIYRELQAVRAVDAPAD--ALWDGRWRLEPCGDTPAPDT-QTMIRALGAEGLRS 363 Query: 371 IIAQR--------ALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGK 414 R L+S +G + + AP + + F Sbjct: 364 FADWRDLGVPRGVLLASPAVWQGAELVAAPLVGRSQNWQAVLERGEDAFFAA 415 >gi|261754101|ref|ZP_05997810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 3 str. 686] gi|261743854|gb|EEY31780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Brucella suis bv. 3 str. 686] Length = 453 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + F L ++ AVSGGSDS+GLL L LS + A++VDH L Sbjct: 8 LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E V +C + I H V+SW + KP GL AAAR ARY L+ + A+ A I Sbjct: 65 RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT +DQ+ET MR R + GL+ M L + ++ ++RP L R+ +R L Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239 +R I+W +DPSN + +ER RVR V + D + ++ + R + N A+ A+ P Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295 L V ++ ++ D S L + A+I GG+ LPG R +ER++ Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + +R V + + R RNLP L L P + VWDGR+ F N +I Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364 Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392 P ++ + I + L S EGGK P Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERHFA 424 Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415 F + D +A A G+ Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448 >gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4] gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4] Length = 446 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 23/397 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I + VSGG+DS+ LL + +S+ ++VDH LR + E R+VSD Sbjct: 31 LSPYKSITLGVSGGADSLALLFLVVEWKKRQSWSG-ALDVVTVDHGLRAESAKEARFVSD 89 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C L++ H+++ W+ + L AREARYALI+EH + ++ ++ H DDQ ET Sbjct: 90 ICRSLQVRHTILEWRPEGALSNLQGRAREARYALIAEHMEESSSEALVLGHHLDDQAETF 149 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G+ + L I RP L ++ + L R SW ED SN Sbjct: 150 LDRLTRGSGVYGLSAMASVEHQG-PNGLQIVRPLLSLSKDQLVLSLEARGQSWVEDQSNE 208 Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + ++RVR+R+ ++ + L K+ + R + V+ +T H + Sbjct: 209 VEAYKRVRLRKLLKGLSDEGLSRDGLAETAKRMRRAREALEEWVSSFWSTRVTQHPAGPL 268 Query: 251 AISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 AI D N+ + +L + + G +E + L+ + ++ ++ Sbjct: 269 AICFDAWQNLPLEMRLRVLSQALSATAGMEYPSRLSKLEALEADLQKQAQLKKTMSGCIV 328 Query: 310 DRRANFLWITRAV--RNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIGPQSYRKAD 363 + L + + V +P++ L +WDGR++ L D ++G Sbjct: 329 SKTVRHLLVWKEVGRSEIPSVGLAKFMNGCRRRIWDGRFEIT-LEDQFGELGDAMSIGQL 387 Query: 364 VPSGIP-------PIIAQRAL-SSMPSKEGGKPLLAP 392 + + P + A +S+ E + LL P Sbjct: 388 ITAPKPEEEFADCAPWPKEAFRASLAIYENERLLLVP 424 >gi|219871527|ref|YP_002475902.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165] gi|219691731|gb|ACL32954.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165] Length = 422 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 21/304 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + +SGG DS+ LL R +K AI + H L A + +C + I Sbjct: 21 IGLSGGVDSVVLLHLFAQ---ARQALNLKLRAIHIHHGLSPNADSWATFCEQLCEQWAIP 77 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + Q GL A AR ARY +I +H + ++ TAH DDQ+ET ++ +R Sbjct: 78 LTVCKVQVQGKQ-GLEANARTARYQVIQQHIQRN--EMLATAHHLDDQVETFFLALKRGS 134 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+G + + N+ I RP L + DI ++ Q + W ED SN + F+R Sbjct: 135 GIQGLGAM---QAVSFLQNIAIFRPLLSFNKTDILAYAEQYQLEWIEDESNFNTDFDRNF 191 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDILNIDST 262 +R+ L L + ++F + + + A +H + L+I Sbjct: 192 LRQT----ALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELASRLQNGGLDITGF 247 Query: 263 LLFYLLRVS----AAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANF 315 F LL+ + +++P +E+++ L K+ K V + + +I R Sbjct: 248 EHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQQQ 307 Query: 316 LWIT 319 ++IT Sbjct: 308 IFIT 311 >gi|283783975|ref|YP_003363840.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168] gi|282947429|emb|CBG86975.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168] Length = 432 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 145/403 (35%), Gaps = 31/403 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL ILVA SGG DS LL L + R +++ AI + H L A + V + Sbjct: 9 SLFNRPQILVAFSGGLDSTVLLHQLVQWRALR--PELRLRAIHIHHGLSPHADEWVAHCE 66 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 VC+R ++ V + + G+ A AR+ARY ++ ++ TA DDQ ET Sbjct: 67 AVCARWQVPLMVRRVQLADEGLGIEALARQARYQAFAQALAP--GEILATAQHLDDQCET 124 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L R + + + ++ W ED SN Sbjct: 125 FLLALKRGSGP--AGLSAMAEVSAFADS-RLVRPLLTQSRTALEQWAREHSLCWIEDESN 181 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252 DD ++R +R V L L + F + A + + Sbjct: 182 QDDAYDRNFLRLRV----LPLLQQRWPHFAQATARSAALCAEQESLLDELLAEELSGCMT 237 Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305 + L + + + +R +A + +P + R+ + C+ G Sbjct: 238 TNGTLRLSPLMAMHDVRRAALIRRWLAARNAPMPSRDGLARIWQEVALAREDASPCLCFG 297 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 + R LW ++ +L + W + + I RK Sbjct: 298 EYEVRRYQGQLWWVKSRPGQSETVLRWAD---WQTPLRLPAGLGTAALIPGGELRKPLDD 354 Query: 366 SGIPPIIAQRALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + GG+ L + P+ R T Sbjct: 355 EPVTLRFKAPGMLHIVGRHGGRKLKKIWQELGIPPWRRDTTPL 397 >gi|168245005|ref|ZP_02669937.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447470|ref|YP_002044226.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254789044|sp|B4TK64|TILS_SALHS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194405774|gb|ACF65993.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336227|gb|EDZ22991.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 430 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 145/401 (36%), Gaps = 39/401 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 15 RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + + Sbjct: 73 QVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ G C + RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 131 RGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R L L + F + + L+ + L + I ++ L Sbjct: 188 RNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTL 242 Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310 + +L +R +A + +P ++ER+ + C+ G I Sbjct: 243 RLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIR 302 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 R + LW + T+ E T VW L L + + P Sbjct: 303 RYQSQLWW------IKTVAGQHETTVVWPVWQTPLALPAGLGTVQLVPGGELRRPREEES 356 Query: 371 IIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 357 VSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|308185759|ref|YP_003929890.1| cell cycle protein [Pantoea vagans C9-1] gi|308056269|gb|ADO08441.1| cell cycle protein [Pantoea vagans C9-1] Length = 466 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 81/412 (19%), Positives = 151/412 (36%), Gaps = 38/412 (9%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L A ++VA SGG DS LL L + + + A+ V H L A Sbjct: 33 AFDALLQPDAALVVAFSGGLDSTVLLHQL--LGWQQQHPQSHLRALHVHHGLSPNADAWA 90 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +C + ++ V+ + G+ AAAR ARY +S K +++TA DD Sbjct: 91 AHCQTICEQWQLRCDVLRVTVDGRENGIEAAARTARYQALSAALKP--GEILLTAQHLDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET + +R G+ + + RP L R+ + ++ + W + Sbjct: 149 QCETFLLALKRGSGPAGLAAMPSSRML---GTHQLVRPLLNQSRQSLEAYADVHQLVWID 205 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMR 247 D SN D R++R +R+ + L LY + F + + + L+ + L + Sbjct: 206 DESNQDLRYDRNFLRQRL----LPELYQRWPHFAEATARSAALCSEQEQLLDELLAGQLA 261 Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 +I ++N+ + LLR A GG +P +++R+ ++ + + Sbjct: 262 ELIQPDGSLYFPPLMNMSTLRANALLRRWIAGQGGA--MPSRDALKRIRDEVMASREDAQ 319 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS- 358 + G+ + R L+ LP + W Q +L +L + Sbjct: 320 PRLRFGQAELRRFRQQLYW------LPLFTSLRDTELAWPDIRQPLSLPQNLGTLRASMS 373 Query: 359 ---YRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407 R I + + + GG+ + + +P Sbjct: 374 QSLLRYPLPDEQISVRFHAQGQVHLVGRNGGR----EMKKLWQELQIPPWQR 421 >gi|167856269|ref|ZP_02479001.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755] gi|167852593|gb|EDS23875.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755] Length = 422 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 21/304 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + +SGG DS LL R +K AI + H L A + +C + I Sbjct: 21 IGLSGGVDSAVLLHLFAQ---ARQALNLKLRAIHIHHGLNPNADSWATFCEQLCEQWAIP 77 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + Q GL A AR ARY I +H + ++ TAH DDQ+ET ++ +R Sbjct: 78 FTVCKVQVQGKQ-GLEANARTARYQAIQQHIQRN--EMLATAHHLDDQVETFFLALKRGS 134 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+G + + N+ I RP L + DI ++ Q + W ED SN + F+R Sbjct: 135 GIQGLGAM---QAVSFLQNIAIFRPLLSFNKTDILAYAEQHQLEWIEDESNFNTDFDRNF 191 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDILNIDST 262 +R+ L L + ++F + + + A +H + L+I Sbjct: 192 LRQT----ALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELASRLQNGGLDITGF 247 Query: 263 LLFYLLRVS----AAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANF 315 F LL+ + +++P +E+++ L K+ K V + + +I R Sbjct: 248 EHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQQQ 307 Query: 316 LWIT 319 ++IT Sbjct: 308 IFIT 311 >gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda] gi|226695543|sp|B3CUJ5|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda] Length = 441 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 148/340 (43%), Gaps = 20/340 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +AVSGGSDS+ L+ L +++ G+I +++DH LR + E YVS +C Sbjct: 19 KNPKLAIAVSGGSDSLALM-LLVKHWNEKVKGEITI--LTIDHHLRSESTSEADYVSSIC 75 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +++ H + W + + A AR+ARY L++ + + + ++T H DD +E ++ Sbjct: 76 QNIKLQHVTLHWIHKGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHADDIVENFFI 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + + N+ I RP ++D++ +L Q+NI W DPSN+ + Sbjct: 136 RLLRGAGLAGLSSHNL----FFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNSSN 191 Query: 198 RFERVRVRRFVR------------DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ++ R +VR ++ ++ + L VNN + + + ++ Sbjct: 192 KYLRTQVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQALESVNNEIIHYVVHVVKIY 251 Query: 246 MRSIIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I + + S Y +L I G P + S++R+ L ++ Sbjct: 252 SAGFAVIDRKLFKKASPEARYAILSYLLMIVGANTKPPRFSSLQRISLHDIQEYNTYKTL 311 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344 +++ ++ I R + + VWD R++ Sbjct: 312 HGCIVEYSIEYIIIYREFGRCYPISQVVSNSVVWDYRFKV 351 >gi|317493166|ref|ZP_07951589.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918826|gb|EFV40162.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 439 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 162/403 (40%), Gaps = 30/403 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L + ++VA SGG DS LL AL + +F ++ A+ V H L A V + Sbjct: 11 ASKLQGRSQLMVAFSGGLDSTVLLHALAQLRMQ-NFPHLQLRAVHVHHGLSRYADLWVDH 69 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 VC + ++ V+ K ++G+ AAAR+ARY I++ ++TA DDQ Sbjct: 70 CESVCRQWQVPLKVLRVKVDSQRSGVEAAARDARYHAIADEISHH--ETLLTAQHLDDQC 127 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R GLS M + + + RP L R + + ++ W ED Sbjct: 128 ETFLLALKRGSGP--TGLSAMASHMPFFSTEQL-RPLLDISRAQLEEYAANYDLKWVEDD 184 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN DDRF+R +R V + L + F + + + A + + S+ ++ Sbjct: 185 SNQDDRFDRNFLRLRV----IPNLRDRWPHFPEAVARSASLCAEQEQLLDELLLESLQSL 240 Query: 253 --SQDILNIDSTLLFY------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 D LNID L LLR A G + +P ++ + + Sbjct: 241 MSEDDSLNIDGLLPMSEAKRYALLRRWIACFG--VMMPTREQLQLLWSEVAMAREDAEPQ 298 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +G+ I R L++ LP L ++ WD R + +L D L ++ S Sbjct: 299 LQLGKSQIRRYRQHLYL------LPPLRSLKDQVIAWDPR-ESLSLPDGLGELQLGSRGI 351 Query: 362 ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404 ++ R + + G+ P + + ++P Sbjct: 352 CVRAPKFDEAVSIRFAAHGTLRIIGRRHSRPIKKIWQEHNIPP 394 >gi|227357232|ref|ZP_03841589.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906] gi|227162495|gb|EEI47484.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906] Length = 441 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 154/401 (38%), Gaps = 31/401 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + HILV SGG DS LL L + ++ +AI V H L A D + + Sbjct: 14 RQIGSHTHILVGFSGGVDSTVLLHGLVCLRDKYQLP-LELTAIYVHHGLNSKADDWLTHC 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +++ + + + G+ AREARY ++ + +++TA DDQ E Sbjct: 73 EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQPNQ--VLVTAQHQDDQAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + ++ ++ RP L RE I ++ + + W ED S Sbjct: 131 TFLLALKRGSGP--AGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSII 250 N DDR++R +R V + L + F + L+ + L V ++ +I Sbjct: 188 NQDDRYDRNFLRLHVMPL----LTQRWPHFSQAVTRSAALCGEQEALLDELLDVELQQLI 243 Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302 Q + LLR A C S+P + R+ K+ + Sbjct: 244 DEHQSLDINLLSRCSEIKRNALLRRWFAKC--NKSMPSRSQLSRLWQEVALAKADAEPRL 301 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP---EETTVWD--GRYQFQNLSDSLIQIGPQ 357 + + R L++ + L ++ + + + G S I P Sbjct: 302 RFFQDEVRRYQQRLYLVPVMEELTDRVIEWSLSQPLILPNQLGILAVSRDSGKTICRAPL 361 Query: 358 SYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPLLAPFSR 395 + K V G+ + R L+ K + +AP+ R Sbjct: 362 ADEKVTVRFGLTASSLRIVGRNLARSSKKIWQELNIAPWQR 402 >gi|238759930|ref|ZP_04621084.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236] gi|238701837|gb|EEP94400.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236] Length = 445 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 87/330 (26%), Positives = 140/330 (42%), Gaps = 23/330 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + + ++K AI + H L A V++ Sbjct: 12 QLGDHRHVLVGFSGGLDSSVLLHLLVCL-RELLIPELKVRAIHIHHGLNPLADSWVKHCQ 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + ++ VV K Q G+ AAAR ARY S H +++TA DDQ ET Sbjct: 71 RQCEQWQVPLEVVRVKIDSRQNGVEAAARTARYQAFSSHMAA--DEVLLTAQHLDDQCET 128 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLSGM ++ + + + RP L RE + ++ + +SW ED SN Sbjct: 129 FLLALKRGSGP--AGLSGMAASLPFAHS-QLLRPLLAFSREMLENYACAQQLSWIEDDSN 185 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251 DDRF+R +R V L LY + F + + L+ + L +++ + Sbjct: 186 QDDRFDRNFLRLRV----LPLLYQRWPHFAQSTARSAGLCAEQEQLLDELLADNLQQLQR 241 Query: 252 IS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + +L LLR A G S+P ++R+ L + + Sbjct: 242 PDGSLSIEGLLLASEVKRAALLRRWLAGLG--ASMPSQNQLQRLWLEVAMARQDAEPQLM 299 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPE 333 +G + R +L++ + + T L E Sbjct: 300 LGAYQVRRFRQYLFLLSPLTEIKTPHLPWE 329 >gi|61216416|sp|Q5P9R1|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 466 Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 38/416 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL VAVSGG DS+ LL + ++ ++ + ++ +H R A E R+ Sbjct: 28 LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTGNHGFRAEADHETRF 85 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L + ++ W + + ARE RY+L+ + + ++TAH DQ Sbjct: 86 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M +R G LSGM + ++ ++ I RP L R++I + Q+ +SW EDP Sbjct: 146 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 202 Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 SN D ++ R R + + + + L + + V + L Sbjct: 203 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 262 Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 I + SQ++ ++ + LL +S GG+ P Y + ++ + G+ ++ Sbjct: 263 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 322 Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345 + + + + I R + + T I ET WD R+ + Sbjct: 323 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 382 Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396 N S+ + +P + + + S+P G +LA P+ Sbjct: 383 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 437 >gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries] gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries] Length = 501 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 38/416 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + SL VAVSGG DS+ LL + ++ ++ + ++ +H R A E R+ Sbjct: 63 LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTGNHGFRAEADHETRF 120 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L + ++ W + + ARE RY+L+ + + ++TAH DQ Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M +R G LSGM + ++ ++ I RP L R++I + Q+ +SW EDP Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237 Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 SN D ++ R R + + + + L + + V + L Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297 Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 I + SQ++ ++ + LL +S GG+ P Y + ++ + G+ ++ Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357 Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345 + + + + I R + + T I ET WD R+ + Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417 Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396 N S+ + +P + + + S+P G +LA P+ Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 472 >gi|197286113|ref|YP_002151985.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320] gi|259533731|sp|B4F252|TILS_PROMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194683600|emb|CAR44491.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320] Length = 441 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 23/330 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + HILV SGG DS LL L + ++ +AI V H L A D + + Sbjct: 14 RQIGSHTHILVGFSGGVDSTVLLHGLVCLRDKYQLP-LELTAIYVHHGLNSKADDWLTHC 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +++ + + + G+ AREARY ++ + +++TA DDQ E Sbjct: 73 EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQPNQ--VLVTAQHQDDQAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M + ++ ++ RP L RE I ++ + + W ED S Sbjct: 131 TFLLALKRGSGP--AGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSII 250 N DDR++R +R V + L + F + L+ + L V ++ +I Sbjct: 188 NQDDRYDRNFLRLHVMPL----LTQRWPHFSQAVTRSAALCGEQEALLDELLDVELQQLI 243 Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302 Q + LLR A C S+P + R+ K+ + Sbjct: 244 DEHQSLDINLLSRCSEIKRNALLRRWFAKC--NKSMPSRSQLSRLWQEVALAKADAEPRL 301 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP 332 + + R L++ + L ++ Sbjct: 302 RFFQDEVRRYQQRLYLVPVMEELTDRVIEW 331 >gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|61216585|sp|Q7N8N0|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp. laumondii TTO1] Length = 442 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 156/403 (38%), Gaps = 27/403 (6%) Query: 10 RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R FV + L ILV SGG DS LL L + + + KI+ AI + H L A Sbjct: 7 RLFVTLAKQLGEYKKILVGFSGGLDSSVLLHLLVNWRNQHN-QKIQLRAIHIHHGLNLKA 65 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +C ++ Q G+ AAAR+ARY + + +++TA Sbjct: 66 DQWIEHCQLICDDWQVEFHSARVTIDARQKGIEAAARDARYQVFKSELQK--DEVLVTAQ 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ET + +R G+ +I + + RP L R ++ + + + Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASM---PSIAVFADTLLLRPLLDYSRNELEKYASKHRL 180 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +W ED SN DDR++R +R + + L+ + K + L+ + L + Sbjct: 181 NWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWSHFPKAAARSASLCGEQEQLLDELLNESL 239 Query: 247 RSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 + +I + LLR G + +P + R+ ++ Sbjct: 240 KELITQDGALGIVSLAVCSEAKRNALLRRWFGYHG--MKMPSREQLNRLWYEVALARTDA 297 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE--ETTVWDGRYQFQNLSDSLIQIG- 355 + G+ + R LW+ ++L IL + T V R N++D IQ+ Sbjct: 298 EPRLQFGKYDVRRYKQKLWLVPQWQSLRETILEWDICNTLVLPDRLGELNIADRGIQVRV 357 Query: 356 PQSYRKADVP---SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 P + + G+ I+ ++ + +AP+ R Sbjct: 358 PADNERVTIRFGVQGMISIVGRQHSRHSKKLW-QELGVAPWLR 399 >gi|212710380|ref|ZP_03318508.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM 30120] gi|212686962|gb|EEB46490.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM 30120] Length = 458 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 25/320 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ILV SGG DS LL AL+ + ++ AI V H L A + + +C + Sbjct: 20 RKILVGFSGGIDSTVLLHALYQIKIS-ELPSLEIRAIHVHHGLNIQADKWEAHCASLCQK 78 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I G+ AAAR RY E + + +I+TA DDQ ETV + Sbjct: 79 WDIPFICRHVTVEGSNKGIEAAARAERYQAYRE--ELLEDEIIVTAQHLDDQAETVMLAL 136 Query: 140 QRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R GLS M +++ + N + RP L R + + ++ + W ED SN D Sbjct: 137 KRGSGP--TGLSAMPESLAFQAKCGNTVLLRPLLTISRHALEHYRAEQQLPWVEDDSNQD 194 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIAIS 253 DR++R +R + + L + F + + + A L+ + L + II Sbjct: 195 DRYDRNFLRLHI----MPRLSERWSHFANAVSRSASLCAEQEALLDELLQDSLDEIIDYR 250 Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305 +++ L+R + Q+++P + +ER+ + +G Sbjct: 251 GGLYIDGLVHCSVAKRNALIRRWIGL--HQLAMPPFNQLERIWQEVALARQDAEPICRLG 308 Query: 306 RVVIDRRANFLWITRAVRNL 325 V I R LW+ + + +L Sbjct: 309 NVEIRRYQGALWVVKRINSL 328 >gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654] Length = 417 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 167/391 (42%), Gaps = 22/391 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++VAVSGG DSM LL + + SA++VDH LR+ A E V+++C+ Sbjct: 21 DNLVVAVSGGGDSMALLHVAQAWGRTQGKA---VSALTVDHGLRDEAATEAARVAEICAD 77 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L +AH + W + Q L A AR ARY LI++ A I+ HT DD ET MR Sbjct: 78 LGVAHRTLDWPDWDGQGNLQAMARAARYDLIADAAPAG--AAILIGHTMDDAAETFLMRL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G LS M T +LW+ RPFL RR +R +L R I W +DP+N D ++ Sbjct: 136 ARGSGVDG--LSRMRSTWTDRGHLWL-RPFLTVRRAALRDWLHDREIGWIDDPTNDDTQY 192 Query: 200 ERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +RVR+R+ + ID L + + + R + + ++ Sbjct: 193 DRVRMRQALDLLAPLGIDAERLTMTAQAMTEARQALEHWAEQAARGTAWTEAGDVVFDQA 252 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + + L+ + P ++ + + + + G ++G ++ + Sbjct: 253 KVQALPRETHDRLIAHAIGWVASAAYRPRRAALIQAVRDVT--ETGRATLGGCLLTAKGG 310 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI----GPQSYRKADVPSGIPP 370 L + R + + L + P ++WD R++ Q+ + +D P Sbjct: 311 TLRVGREPKAVTDLRVSP--PSIWDNRWRLSGPDAPSGQVLAVRALGAGGLSDCPDWRET 368 Query: 371 IIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + L + P+ G L+ AP + + Sbjct: 369 GLPRDTLLASPAVFAGDRLVAAPLAGHPAGW 399 >gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114] gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 414 Score = 253 bits (646), Expect = 5e-65, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 163/411 (39%), Gaps = 28/411 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDSM LL+ L + S +VDH LR A DE R V+ C+ Sbjct: 17 PKALGVAVSGGSDSMALLVLLCGFAER---NGVALSCATVDHGLRPEAADEARSVAGYCA 73 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H + W+ AAR ARY L+++ A+ I HT DDQ ETV M Sbjct: 74 AHDVPHVTLKWEGWDGTGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQAETVLMG 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ D L RP L R +R FL ++WCEDPSN D + Sbjct: 134 LARASGVDGLSAMPARRD---DRGLCWHRPLLATSRAGLRGFLSANGVAWCEDPSNDDAQ 190 Query: 199 FERVRVRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 FER++ RR + + D +L + R + I +++ + Sbjct: 191 FERIKARRALTTLAELGVDRASLAQVAQNMAQARAALEQQTRRAIGDLVSLLGGGAMMPW 250 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + S + +L + P +++ + L++ G ++ + + Sbjct: 251 SGFQTLPSEIARRVLMAAIDWIAAPPHAPRQKALTAALSALRA--SGSATVAGCRLILKD 308 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD-------SLIQIGPQSYRKADVPS 366 + W+ R + + + + +WD R++ +L +IG Q + P Sbjct: 309 DRFWMFREFQAVAHA--RADASQLWDNRWKVTGGQGKQAREIRALGEIGLQQH-----PE 361 Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISFGKVF 416 + + L + P+ G L+ AP + ++ V F +VF Sbjct: 362 WRTMGLPRALLLATPAVYQGDVLIAAPVVQNTARWRADVIKRPGCLFDEVF 412 >gi|309787133|ref|ZP_07681745.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617] gi|308924711|gb|EFP70206.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617] Length = 415 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 142/396 (35%), Gaps = 37/396 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A SGG DS LL L ++ + AI V H L A V + +VC + ++ Sbjct: 2 AFSGGLDSTVLLHQLVQWRTEN--PGVVLRAIHVHHGLSANADAWVTHCENVCQQWQVPL 59 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V + ++ G+ A AR+ARY + + +++TA DDQ ET + +R Sbjct: 60 VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GLS M + + + RP L R ++ + L + W ED SN DD ++R + Sbjct: 118 P--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDESNQDDSYDRNFL 174 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262 R V + L + F + + A + + Q L I Sbjct: 175 RLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQSPQGTLQIAPM 230 Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315 L R +A + G +P ++ R+ + C+ G I R + Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRFGAFEIRRYQSQ 290 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374 LW ++V I+ W Q L L + + P + + Sbjct: 291 LWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRF 344 Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 L + + GG+ L + P+ R T Sbjct: 345 KALGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380 >gi|293390367|ref|ZP_06634701.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950901|gb|EFE01020.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 448 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 30/341 (8%) Query: 9 VRFFVRSLVYPA----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F + L A L+ SGG DS LL +R + AI + H L Sbjct: 7 LEQFSQQLQRHAPNQTQFLIGFSGGLDSTALLTLFAKHRENR--PHFQLRAIHIHHGLSP 64 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + +C +L I + K + Q G+ A AREARY I++H + T Sbjct: 65 NADAWTAHCQQICRQLNIPLLIQPVKV-RLQNGIEAGAREARYEAIAQHILPE--EWLAT 121 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DQ ET ++ +R +G+G + + I RP L R+ + +F+ Q+ Sbjct: 122 AHHQQDQTETFFLALKRGSGLQGLGAMQANSIV---YGVPIFRPLLNFSRQQLMAFVQQQ 178 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241 ++W ED SN D++++R +R V L + F + L+ + Sbjct: 179 QLTWVEDESNEDNQYDRNFLRNVV----LPEFRQRWAHFDSAVQRSAQHCYEQQQLLNEL 234 Query: 242 LTVHMRSIIAISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---L 292 L + + + D LLR+ G + +P +E+++ + Sbjct: 235 LAEEYQKNVVENDRTFKVHDFATYSPAKQRALLRLWLQEQG--VMMPSLAQLEQLISDVI 292 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 F KS + + ++ R N L++T ++ + L + Sbjct: 293 FAKSDAQPQFRLEDKILRRHQNRLFLTPVFTDISPVCLEAK 333 >gi|311280843|ref|YP_003943074.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1] gi|308750038|gb|ADO49790.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1] Length = 436 Score = 252 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 100/422 (23%), Positives = 153/422 (36%), Gaps = 45/422 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 VR L ILVA SGG DS LL L V +S I+ AI V H L A VR Sbjct: 8 AVRRLQPYRQILVAFSGGLDSTVLLHQL--VCWRQSAPDIQLRAIHVHHGLSPNADAWVR 65 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +C++ ++ +V + G+ A AR+ARY + + ++ TA DDQ Sbjct: 66 HCQQLCAQWQVPLAVARVTLADDGLGIEAHARQARYEAFRDALQP--GEVLATAQHLDDQ 123 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + +R GLS M + + RP L RE + + +Q + W ED Sbjct: 124 SETLLLALKRGSGP--AGLSAMPGVAPFA-GTRLVRPLLEMSRESLMQWAIQHQLRWIED 180 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN DD +ER +R V L L + F + + A + + Sbjct: 181 ESNQDDAYERNFLRLRV----LPLLKARWPHFAEASARSAALCAEQEQLLDELLADDLAR 236 Query: 252 ISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300 ++ + LLR A G +P R+ + Sbjct: 237 LTGAEGQLAIMPMAQMSEPRRAALLRRWLAQRG--ALMPSRDMTARIWQEVALAREDASP 294 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR---YQFQNLSDSLIQIGPQ 357 + +G + R LW + TL P+ WD Q +L + Q Sbjct: 295 VLRLGAFEVRRYQQQLWW------IKTLPAPPQTPLRWDDISLPLQLAEGHGALQLVPGQ 348 Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSRFMTKF----DLPVA 405 + R I L + + GG+ L +AP+ R T + P+A Sbjct: 349 TLRHPRPDEAITIRYTAPGLLHIVGRHGGRKLKKIWQEMGVAPWLRDTTPLLFFGETPIA 408 Query: 406 YA 407 A Sbjct: 409 AA 410 >gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC 19061] gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC 19061] Length = 443 Score = 252 bits (645), Expect = 7e-65, Method: Composition-based stats. Identities = 83/397 (20%), Positives = 146/397 (36%), Gaps = 33/397 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVSDV 76 IL+ SGG DS LL L + + I AI + H L A V + + Sbjct: 20 KKILLGFSGGLDSTVLLHLLTRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVEHCRQM 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C+ ++ + Q G+ AAAREARY + + +++TA DDQ ET Sbjct: 80 CADWKVDFRTEKVRLDIRQNGIEAAAREARYQSFQQMLQP--DEILITAQHLDDQAETFL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R GLS M + + + RP L R ++ + + + W ED SN D Sbjct: 138 LALKRGSGP--AGLSSMPSRMPF-SGTTLIRPLLNVSRAELEVYARGKELEWIEDDSNQD 194 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--- 253 DR++R +R + + L + F + + + S+ ++S Sbjct: 195 DRYDRNFLRLRIMPL----LNQRWPHFPQAVSRSASLCGEQEQLLDELLSESLDSVSTLE 250 Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 + + LLR + G + +P ++R+ + +G Sbjct: 251 GSILIPPLESDSEAKRNALLRRWLSQRG--VKMPAREQLQRIWSEVALARQDAEPRFRLG 308 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPE---ETTVWDGRYQFQNLSDSLIQI-GPQSYRK 361 + I R LW+ + L +L + E + DG I++ P S + Sbjct: 309 QNEIRRYQQQLWLVPRYQPLAGSVLEWDTQQELILPDGLGTLILSEKEGIKVRSPNSREQ 368 Query: 362 ADVPSGIP---PIIAQRALSSMPSKEGGKPLLAPFSR 395 + GI I+ + + +AP+ R Sbjct: 369 VTIRFGIQGNISIVGRHHSRHSKKLW-QELGVAPWLR 404 >gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131] gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131] Length = 412 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 31/393 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DSM LL I A++VDH LR A DE R V+ VC+ L Sbjct: 19 LGLAVSGGGDSMALLHLAAE-------TGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ + LM AR AR LI++ A+ + HT DD ET MR R Sbjct: 72 VPHDILRWEGWDGRGNLMDQARRARLRLIADWARAAGLEAVALGHTRDDVAETFLMRLAR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + RP L RE++R+ L +R SW EDPSN + FER Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFER 188 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VRVR+ + + L ++R ++ + + V R + ++ Sbjct: 189 VRVRQAMESLADLGLRPERLADVASHLAEVRDALDLQLREAAGRLAQVD-RGDVVLASAA 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L + +L LLR + P ++ + + L G V++ + R L Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGQAIRRLSEGT--TVTLHGCRLAPRREGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368 I R + + +++ E WDGR+ Q + + +GP+ + P Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSADGLEIRALGPEGLTRC--PDWR 361 Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + +L + PS G L+ AP + + Sbjct: 362 ASGLPRPSLLAAPSVWHGDALVAAPLAGLSNGW 394 >gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193] gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193] Length = 399 Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 153/403 (37%), Gaps = 18/403 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA I +AVSGG DS+ L+ L D ++ +VDH LR ++ E + + Sbjct: 2 PARIGIAVSGGGDSVALMHLLKECFCD---DPVELMVATVDHGLRAESRQEAEDTARMAR 58 Query: 79 RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + H +++W+ +TG L AR ARY L++ A+ ++ HT DDQ ETV M Sbjct: 59 ELGLRHEILTWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADDQAETVIM 118 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + T L R ++R +L SW EDPSN D+ Sbjct: 119 RLMRASGVNGLAGIPVRRTQDGVSLLRPLLGLRRV---ELRQYLDAAGQSWIEDPSNEDE 175 Query: 198 RFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 ++R+++R+ + + + AL + + + + + + +++ Sbjct: 176 SYDRIKIRKALAVLEDLGLTVPALATVAQNMGKAQKALGWYAFLSARDMVRIEAGAVVLE 235 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + + + L+ + G P + M + + + G ++ I Sbjct: 236 LRKYRTLPDEISHRLMLQAILWVSGGQYAPRRQPM--IEAVAIAQRGGSATLAGCRILSH 293 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPI 371 +W+ R +P P + +WD R++ ++ P + P Sbjct: 294 QGKIWVCREAAMVPQEACDPGD--LWDQRWRIFAGKLEACEVRPLGSEGLKLCPDWRAQG 351 Query: 372 IAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPVAYAFSISFG 413 L P+ G + AP + F + F Sbjct: 352 CPAPILEVTPALWRDGNLMAAPLAGFANGCSAEPINSAEEFFA 394 >gi|168464199|ref|ZP_02698102.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195632620|gb|EDX51074.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 430 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 GRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPAWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|153947345|ref|YP_001400015.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP 31758] gi|254764826|sp|A7FFI7|TILS_YERP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|152958840|gb|ABS46301.1| tRNA(Ile)-lysidine synthase [Yersinia pseudotuberculosis IP 31758] Length = 451 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 134/338 (39%), Gaps = 29/338 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L+P+ L H+LV SGG DS LL L + ++ AI + H Sbjct: 1 MLLNPL------FAQLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHH 53 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A V++ C + +I VV Q G+ AAAR ARY S A Sbjct: 54 GLNPQADSWVKHCMQQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKE 111 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET + +R GLS M + + + + RP L RE + ++ Sbjct: 112 VLLTAQHLDDQCETFLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENY 168 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAML 237 + + W ED SN DDRF+R +R V L L + F + + L Sbjct: 169 AQAQQLQWIEDDSNQDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQL 224 Query: 238 IPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + L +++ + + +L +LR A G +P ++R+ L Sbjct: 225 LDELLAENLQQLQGPDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWL 282 Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327 + + IG + R L++ + + T Sbjct: 283 EVAMARQDAEPQLMIGTRQVRRFRQHLYLLMPLAEITT 320 >gi|271499513|ref|YP_003332538.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586] gi|270343068|gb|ACZ75833.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586] Length = 448 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 83/407 (20%), Positives = 151/407 (37%), Gaps = 39/407 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L LVA SGG DS LL + + R+ + A+ V H L A + Sbjct: 18 QLATGGRYLVAYSGGLDSTVLLHVMTRLRLPRA---LSLRAVYVHHGLSVNADAWAEHCR 74 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C ++ +V++ K G+ AAAR ARY ++ +H ++TA DDQ ET Sbjct: 75 TQCINWQVPFNVLAVKVDARDGGIEAAARTARYQVLHQHLCE--GETLLTAQHQDDQSET 132 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G+ T+ + + RP L RE + + + W ED SN Sbjct: 133 FLLALKRGSGPAGLASMAASATL---NGVTLLRPLLGISREQLEGYARAHQLVWVEDDSN 189 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252 D+R++R +RR V L AL + F + A + S+ + Sbjct: 190 ADERYDRNFLRRQV----LPALRQRWPHFPSAVARSAALCAEQEQLLDELLAESLATLRN 245 Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 + L++D+ + R A + +P + R+ + + +G Sbjct: 246 ADGGLSVDALIPMSATRRFALLRRWLSEQGARMPSREQLMRLWHEVALSREDANPQLQLG 305 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS-YRKADV 364 + R ++L+ ++ + +L T +L D L Q+ + + Sbjct: 306 SWQVRRFRHYLYWLPTMQPVTGYVLPWRPTVA------PLSLPDGLGQLTLSAQGIRVRQ 359 Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P + + + + +E G+P+ + P+ R T Sbjct: 360 PRSDESVTVRFGFQGYVQIVGREHGRPIKKLWQELGVPPWLRDRTPL 406 >gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like [Ruegeria sp. TM1040] gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040] Length = 430 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 101/413 (24%), Positives = 181/413 (43%), Gaps = 28/413 (6%) Query: 1 MFLSPIE-SVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M L+P E ++ +R+ + P + VAVSGGSDS+ L+ L ++ + + Sbjct: 1 MLLTPTEEALTSAIRARIGPLPEKLGVAVSGGSDSVALMHVLATMARAEDTA---LAVAT 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH LR ++ E +V+ L ++H ++W++ L A AR ARY L+ + A+T Sbjct: 58 VDHGLRPESRREAEFVAQQAHDLGLSHQTLTWQHPADSGNLQAEARAARYRLLGDWARTQ 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + HT DDQ ETV MR +R GL GM T + + + RP L RR D+ Sbjct: 118 GLGAVAVGHTADDQAETVLMRLRRASGV--AGLCGMP-TCHHRDGIDVLRPMLDLRRSDL 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNN 232 R++L R+++W EDPSN D +FERVR+R + ++ + AL + +++ Sbjct: 175 RAYLTARDVAWIEDPSNLDMKFERVRIRDALNALEPLGLTVDALTAVADNMRMANRALDS 234 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A + + ++ +++ + LL + G P + + Sbjct: 235 ATRTAAASIGQIRLGMVVLDCAGFNRLETEIARRLLVSALLHTNGAAYPPRRAPVLDALK 294 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTV------WDGRYQF 344 LK G+ + +++ +W+ R ++ L P E V WD + Sbjct: 295 ALKEGRGATLQGCHILVR--GGAIWVGREYASVQHSACALLPGEGGVATMDATWDAAWHI 352 Query: 345 QNLSDSLIQIGPQSYRK---ADVPSGIPPIIAQRALSSMPSKE-GGKPLLAPF 393 + + ++ ++ A++P + L S+P G+ + AP Sbjct: 353 KAPAGWSRRVEIRALGAEGLAEIPDWRSHDAPRALLKSLPGVWCDGQLIAAPL 405 >gi|33151295|ref|NP_872648.1| cell-cycle protein MesJ [Haemophilus ducreyi 35000HP] gi|61216603|sp|Q7VPN7|TILS_HAEDU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33147515|gb|AAP95037.1| probable cell-cycle protein MesJ [Haemophilus ducreyi 35000HP] Length = 428 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 155/418 (37%), Gaps = 27/418 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LS + + ++L+++SGG DS+ LL AI + H Sbjct: 1 MLLSRFQQ--QLTQHFPQQPNVLLSLSGGIDSVVLLDLFSR-------TTTPLRAIYIHH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + +C + I ++ TG+ A AR ARY I+EH + Sbjct: 52 GLSANADNWADFCEALCKQYNIPF-ILQKVTVDKSTGIEAGARTARYKAIAEHIQAN--E 108 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ TAH +DQ ET + +R KG+ + + N+ I RP L +++I+ + Sbjct: 109 ILATAHHLNDQAETFLLALKRGSGVKGLSAM---QIVSHRQNMTIFRPLLSTTKKEIQQY 165 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 Q+ + W ED SN ++ ++R +R + + L + + + K A L+ + Sbjct: 166 AKQQQLCWIEDESNQNNHYDRNFLRNQILPLLLQR-WPQFNQMIARSAKHCTAQQQLLAE 224 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERVM---LF 293 L + I + L I F L+ + I +P E+++ L Sbjct: 225 LLDEELHRYANIDEKSLQISQFKHFSPLKQQQLIRLWLAKCDIPMPTSAQFEQIISGFLN 284 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL--ILYPEETT-VWDGRYQFQNLSDS 350 + K + + + R L++T + N IL +T + D Q Sbjct: 285 SATDKHPQLRLKNWTLRRFQKTLYLTPQLANTQHFCQILSVNQTIDLPDNLGQLTRQPQQ 344 Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPVAYA 407 +I + +P + + L K P + + +PV Sbjct: 345 IIYQQTHKTNRLLLPESLRTVPLTIKLHQTGKVKRYQHPHSEEMKKLYQQAKIPVWQR 402 >gi|17986625|ref|NP_539259.1| cell cycle protein MESJ [Brucella melitensis bv. 1 str. 16M] gi|17982239|gb|AAL51523.1| cell cycle protein mesj [Brucella melitensis bv. 1 str. 16M] Length = 429 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 129/424 (30%), Positives = 191/424 (45%), Gaps = 32/424 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + AVSGGSDS+GLL L LS + A++VDH LR + E V +C + I Sbjct: 2 IAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKLRAESALEAENVGLLCQKHGI 60 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H V+SW + KP GL AAAR ARY L+ + A+ A I+T HT +DQ+ET MR R Sbjct: 61 MHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFIVTGHTENDQIETFLMRKARS 120 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + GL+ M L + ++ ++RP L R+ +R L +R I+W +DPSN + +ER Sbjct: 121 GHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELTRRGIAWVDDPSNANIDYERP 180 Query: 203 RVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAISQDILNI 259 RVR V + D + ++ + R + N A+ A+ P L V ++ ++ D Sbjct: 181 RVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADPATLGVDAAGMMFLNADCYAA 240 Query: 260 DSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 S L + A+I GG+ LPG R +ER++ + +R V + + Sbjct: 241 LSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQDAPRRLTVFGALIERGEKGAP 300 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-----DVPSGIPP 370 R RNLP L L P + VWDGR+ F N +I P ++ + I Sbjct: 301 HRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIAPPGRQELIDFLKNSGRDIES 360 Query: 371 IIAQRALSSMPSKEGGKPLLAP-------------------FSRFMTKFDLPVAYAFSIS 411 + L S EGGK P F + D +A A Sbjct: 361 RRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFAIFDHVLPGHDFALAQAVEAR 420 Query: 412 FGKV 415 G+ Sbjct: 421 LGRA 424 >gi|167553350|ref|ZP_02347099.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|197262939|ref|ZP_03163013.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241194|gb|EDY23814.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205322182|gb|EDZ10021.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 430 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G C + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|261867859|ref|YP_003255781.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413191|gb|ACX82562.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 448 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 131/332 (39%), Gaps = 26/332 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ SGG DS LL +R + + AI + H L A + Sbjct: 16 RHAPNQKQFLIGFSGGLDSTALLALFAKHRENR--PRFQLRAIHIHHGLSPNADAWAAHC 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C L I + K + Q G+ A ARE RY I++H + TAH DQ E Sbjct: 74 QKICRHLNIPLLIQPVKV-RLQNGIEAGARETRYEAIAQHILPE--EWLATAHHQQDQTE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ +R +G+G + + I RP L R+ + +F+ Q+ ++W ED S Sbjct: 131 TFFLALKRGSGLQGLGAMQANSIV---YGVPIFRPLLNFSRQQLMAFVQQQQLTWVEDES 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSII 250 N D++++R +R V L + F + L+ + L + + Sbjct: 188 NEDNQYDRNFLRNVV----LPEFRQRWAHFDSAVQRSAQHCYEQQQLLNELLAEEYQKNV 243 Query: 251 AISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 + D LLR+ G + +P +E+++ +F KS + Sbjct: 244 VENDRTFKVHDFATYSPAKQRALLRLWLQEQG--VMMPSLAQLEQLISDVIFAKSDAQPQ 301 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 + ++ R N L++T ++ + L + Sbjct: 302 FRLEDKILRRHQNRLFLTPVFTDISPVCLEAK 333 >gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380] gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380] Length = 456 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 17/312 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + D+ ++ AI + H L A V++ Sbjct: 18 QLGGHRHVLVGFSGGLDSSVLLHLLVCL-RDQFIPELMIRAIHIHHGLNPRADSWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +A VV +G+ AAAR ARY + H T +++TA DDQ ET Sbjct: 77 QQCEQWGVALEVVRVTIDTRDSGIEAAARNARYQAFASHLATN--EVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKRPFAHS-QLLRPLLAFSRETLENYARAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 DDRF+R +R + + L+ + + + L+ + L +++ + Sbjct: 192 QDDRFDRNFLRLRILPL-LNRRWPHFAQATARSAGLCAEQEQLLDELLADNLQQLQNTDG 250 Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306 +L +LR A G S+P ++R+ L + +++G Sbjct: 251 ALSIDGLLLASDAKRAAILRRWLARSG--ASMPSQSQLQRLWLEVAMARQDAEPQLTLGA 308 Query: 307 VVIDRRANFLWI 318 ++ R +L++ Sbjct: 309 HLVRRYRQYLYL 320 >gi|238911302|ref|ZP_04655139.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 430 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 144/402 (35%), Gaps = 39/402 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + +L +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R + LW + T+ E T VW L L + + P Sbjct: 302 RRYQSQLWW------IKTVAGQHETTVVWPVWQTPLALPAGLGTVQLVPGGELRRPREEE 355 Query: 370 PIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 356 SVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|163742231|ref|ZP_02149619.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10] gi|161384561|gb|EDQ08942.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10] Length = 386 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 162/389 (41%), Gaps = 31/389 (7%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW--- 89 M L+ LH +D ++ +VDH LR T+ DE + V+ ++L +AH ++ W Sbjct: 1 MALMHLLHECFADVG---VEICVATVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQWCDR 57 Query: 90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 + L AR ARYAL++ A+ + + + HT DDQ ET+ MR R G+ Sbjct: 58 PTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLS 117 Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 + + + RP L RE++R++L R W EDPSN D RFERVRVR+ + Sbjct: 118 AMSRSRAME---GVTLLRPLLEVTREELRAYLRARECCWVEDPSNEDARFERVRVRQAME 174 Query: 210 DID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ + L + R ++ + V +I+ + + + Sbjct: 175 ALEPLGLTVERLAAVARNMGAAREALDWYTFLAARDMAEVRDGAIVIDQRQFRTLPDEIA 234 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 LL S G + P M + ++ G G ++G + R WI R + Sbjct: 235 HRLLVRSVQWVSGAVHPPRRDPMVKARDAVRHG--GSFTLGGCRMITRRQRTWICREYKP 292 Query: 325 LPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQS------YRKADVPSGI----PPI 371 + + P + +WD R++ + +GP +R+A+VP + P + Sbjct: 293 VAEEVALPGK--IWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQAEVPGAVLQATPAV 350 Query: 372 IAQRALSSMPSKEGGKPLLAPFSRFMTKF 400 Q L + P G A + +F Sbjct: 351 WKQDELIAAPLAGNGNGWTAELVQNSEEF 379 >gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism] Length = 460 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 144/334 (43%), Gaps = 14/334 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + + VAVSGG DSM L + R +A++VDH LR A DE R V Sbjct: 37 SRLAVAVSGGGDSMALCLLAQRWAGRRRGST---TALTVDHGLRPEAADEARQVGRWLKA 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +AH V+ W+ KP +G+ AAAR ARY L++ A+ ++ AH +DQ ET +R Sbjct: 94 RGVAHHVLEWRGPKPVSGIQAAARAARYGLMTAWAREAGVLHLLVAHHQEDQAETFLLRL 153 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ + + RP L R +R+ W EDPSN D F Sbjct: 154 ERGSGIDGLSAMAAIVETPA---VRLVRPLLGVPRARLRATARAFGQEWLEDPSNRDAAF 210 Query: 200 ERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 R R+R + + L K + +R+ + NA + L+ TVH + Q Sbjct: 211 ARTRIRAALPALARSGMSPAVLAEKANRVGHVRIALENAASALLAVCCTVHPAGYARLDQ 270 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGRVVIDRR 312 I+ + F L GG+ P +ER+ + GK G ++G I Sbjct: 271 SIVAAAPEDVSFRALARILMCVGGREYAPRREKLERLYAVVVGGKLGKARTLGGCRILAE 330 Query: 313 ANFLWITRAVRNLPTLILY-PEETTVWDGRYQFQ 345 + + R +R +P I P VWDGR+ + Sbjct: 331 GYRILVCREMRGMPEPIAAVPGTRVVWDGRFVIR 364 >gi|51597300|ref|YP_071491.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP 32953] gi|186896405|ref|YP_001873517.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+] gi|61217229|sp|Q667K7|TILS_YERPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51590582|emb|CAH22223.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|186699431|gb|ACC90060.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+] Length = 460 Score = 250 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + ++ AI + H L A V++ Sbjct: 18 QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV Q G+ AAAR ARY S A +++TA DDQ ET Sbjct: 77 QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251 DDRF+R +R V L L + F + + L+ + L +++ + Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247 Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + +L +LR A G +P ++R+ L + + Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327 IG + R L++ + + T Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329 >gi|253988142|ref|YP_003039498.1| tRNA (Ile)-lysidine synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica] Length = 442 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%) Query: 10 RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R FV + L ILV SGG DS LL L + + + ++ AI + H L A Sbjct: 7 RLFVTLTKQLGEHKKILVGFSGGLDSSVLLYLLVNWRNQYN-QNVQLRAIHIHHGLNIKA 65 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V++ +C ++ Q G+ AAAR+ARY + + +++TA Sbjct: 66 DQWVKHCQQICDDWQVEFFFEKVTIDARQKGIEAAARDARYQVFKRELQK--DEILVTAQ 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ET + +R G+ I + + RP L R ++ + + + Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASM---PPIAVFADTLLLRPLLGYSRNELEIYANEHCL 180 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +W ED SN DDR++R +R + + L+ + + + L+ + L + Sbjct: 181 NWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWPYFPQSVARSANLCGEQEQLLDELLNESL 239 Query: 247 RSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 + +IA + LLR G + +P + R+ ++ Sbjct: 240 KKLIAQDGALAISPLDGYSEVKRNALLRRWFGFHG--MKMPSREQLCRLWYEVALARTDA 297 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339 + G+ + R LW+ ++ L +++ WD Sbjct: 298 EPRLQFGQHDVRRYKQKLWLVPQLQPLRGIVIE------WD 332 >gi|56412509|ref|YP_149584.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|61216419|sp|Q5PD76|TILS_SALPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56126766|gb|AAV76272.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 430 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 144/399 (36%), Gaps = 35/399 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 15 RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + + Sbjct: 73 QVPLVVERMTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ G + RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 131 RGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R +R + L + + L+ + L + I ++ L + Sbjct: 188 RNFLRLRALPL-LQRRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLS 245 Query: 261 STLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313 +L +R +A + +P ++ER+ + C+ G I R Sbjct: 246 PLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQ 305 Query: 314 NFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPII 372 + LW ++V T +++P T L L + + P + Sbjct: 306 SQLWWIKSVAGQHETTVVWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVS 358 Query: 373 AQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + GG+ L + P+ R T Sbjct: 359 IRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|326626600|gb|EGE32943.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 430 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G C + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPASVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|170023333|ref|YP_001719838.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII] gi|169749867|gb|ACA67385.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII] Length = 460 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + ++ AI + H L A V++ Sbjct: 18 QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV Q G+ AAAR ARY S A +++TA DDQ ET Sbjct: 77 QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251 DDRF+R +R V L L + F + + L+ + L +++ + Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247 Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + +L +LR A G +P ++R+ L + + Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327 IG + R L++ + + T Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329 >gi|168235017|ref|ZP_02660075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738177|ref|YP_002113259.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|254789047|sp|B4TYE9|TILS_SALSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194713679|gb|ACF92900.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291746|gb|EDY31096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 430 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVKRVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + + + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b] gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b] Length = 417 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 99/402 (24%), Positives = 172/402 (42%), Gaps = 17/402 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VAVSGGSDS+GLL+ L+ R G A++VDH LR A E V+ C Sbjct: 20 APERLAVAVSGGSDSLGLLVVLNDW---RLAGGPALHAVTVDHRLRPEAAQEAAKVAADC 76 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 RL + H +++W + + L AR ARY L+++ A+ I AHT DDQ ET M Sbjct: 77 KRLGVPHDILTWTDWDGRGNLSDQARRARYGLMAQWARGQGIACIAIAHTADDQAETFLM 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + RP L R ++R+ L R ++W EDPSN D Sbjct: 137 RLARGAGVDGLSAM---SERFESHGVTFCRPALAIFRHELRAALEGRGMTWVEDPSNEDP 193 Query: 198 RFERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R+ERV+ R ++++ L + D+R + +++ + +I Sbjct: 194 RYERVKARAALQELAPLGITTAGLLAMAHRMSDVRQTLYLYALEAARQHVRIQSGDLIVD 253 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + +++ S G +P R+++ ++ + G+ +++ ++ R Sbjct: 254 RPGFDGLPRETARRIMQTSLKWISGAEYVPRGRAVDDLLDAIAEGRD--MTLQGCLVTLR 311 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG-IPPI 371 + L ITR + + + + T VWDGR++ + + ++ +G Sbjct: 312 KDHLRITREWKAVASERC--QVTHVWDGRWRLEGPDIAGAELRALGKNGLSHCAGRRETG 369 Query: 372 IAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISF 412 + +L + PS LL AP + + + F Sbjct: 370 LPATSLIAGPSVWREDELLAAPLAGLENGWRAILIRDEEAYF 411 >gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12] gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12] Length = 417 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 167/387 (43%), Gaps = 23/387 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + I VA+SGG DSM LL L + + A SVDH LR A DE+ Sbjct: 17 RWVPDARRIGVAMSGGGDSMALLHLLADWAAQ---SGAELRAASVDHGLRPEAADEIALA 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + C+ L I H ++W P L AAAR+ARY L+S+ A+ ++ HT DDQ E Sbjct: 74 AKTCAALGIPHDSLTWD-EAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQDDQAE 132 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV +R R G L+ M L +W+ RP L R +R+ L R ++W EDPS Sbjct: 133 TVLLRLLRGSGVDG--LAAMRPRTLRAGTVWL-RPLLAVSRAALRADLTARGVAWAEDPS 189 Query: 194 NTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 N D RF+RVRVR+ + +DL L + + + A I Sbjct: 190 NADLRFDRVRVRQAMAALDLPVARLADTAQAMARAQEALGRRAAEAAQAGAVRFEDGDIL 249 Query: 252 ISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 ++ D L+ +D+ LL + G P ++ V L++G+ ++ + Sbjct: 250 LTADALSALDAETRLRLLAEALRWVAGAAYRPRLSALTGVWDGLEAGQGA--TLHGCRLL 307 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS------LIQIGPQSYRKADV 364 + + R R + L + +WDGR+Q + D + +G + Sbjct: 308 AGVSAWRVCREYRAVAALEVPAG--ALWDGRWQLRLAKDETRPDVTVRALGQAGLGQITR 365 Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLLA 391 P PP +L S P+ G +L+ Sbjct: 366 PDPGPPH---PSLMSTPALWRGDEVLS 389 >gi|200387429|ref|ZP_03214041.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604527|gb|EDZ03072.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLAPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|168230546|ref|ZP_02655604.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471349|ref|ZP_03077333.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457713|gb|EDX46552.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335048|gb|EDZ21812.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G C + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|289830090|ref|ZP_06547530.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 431 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 15 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 72 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 73 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 130 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 131 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 187 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 188 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 242 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 243 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 302 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW + V T + +P T L L + + P Sbjct: 303 RRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 355 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 356 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 398 >gi|238787216|ref|ZP_04631015.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641] gi|238724478|gb|EEQ16119.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641] Length = 461 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 23/327 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L +LV SGG DS LL L + D+ ++K AI + H L A V + Sbjct: 18 QLGEQRRVLVGFSGGLDSSVLLHLLVCL-RDQLIPELKIRAIHIHHGLNPQADSWVMHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + RI VV +G+ AAAR ARY S H +++TA DDQ ET Sbjct: 77 QQCKQWRIPLEVVRVSIDARHSGIEAAARTARYQAFSSHLAA--DEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYARAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247 DDRF+R +R V L L + F + + A L+ L Sbjct: 192 QDDRFDRNFLRLKV----LPLLNQRWPHFAQATARSASLCAEQEQLLDELLADNLQQLQN 247 Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 A+S +L LLR A CG S+P ++R+ L ++ + Sbjct: 248 PEGALSIAGLLLASEAKRAALLRRWLAGCG--ASMPSQSQLQRLWLEVAMARADAEPQLI 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLIL 330 IG + R +L++ + + L Sbjct: 306 IGSHQVRRFRQYLYLLPPLAEIRAPHL 332 >gi|204927320|ref|ZP_03218522.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323985|gb|EDZ09180.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPHVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + + + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|62178806|ref|YP_215223.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75484785|sp|Q57T19|TILS_SALCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62126439|gb|AAX64142.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713260|gb|EFZ04831.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + A L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAAQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPAWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|16759227|ref|NP_454844.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140776|ref|NP_804118.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161205|ref|ZP_03346915.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416904|ref|ZP_03350048.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213428146|ref|ZP_03360896.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213612494|ref|ZP_03370320.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646227|ref|ZP_03376280.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|61216696|sp|Q8Z996|TILS_SALTI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25325274|pir||AG0531 cell cycle protein MesJ [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501518|emb|CAD08695.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhi] gi|29136400|gb|AAO67967.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|33356621|gb|AAQ16558.1| putative cell cycle protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 430 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW + V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|22126993|ref|NP_670416.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM 10] gi|45442556|ref|NP_994095.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108806535|ref|YP_650451.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Antiqua] gi|108813098|ref|YP_648865.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|145598932|ref|YP_001163008.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides F] gi|149366937|ref|ZP_01888970.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125] gi|162418463|ref|YP_001607754.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola] gi|165927115|ref|ZP_02222947.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165939833|ref|ZP_02228373.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. IP275] gi|166011914|ref|ZP_02232812.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. E1979001] gi|166211335|ref|ZP_02237370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. B42003004] gi|167399756|ref|ZP_02305274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419749|ref|ZP_02311502.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425306|ref|ZP_02317059.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470891|ref|ZP_02335595.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis FV-1] gi|218928230|ref|YP_002346105.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CO92] gi|229837769|ref|ZP_04457929.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A] gi|229840991|ref|ZP_04461150.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843092|ref|ZP_04463242.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229903541|ref|ZP_04518654.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|270487322|ref|ZP_06204396.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27] gi|294503079|ref|YP_003567141.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003] gi|61217402|sp|Q8ZH50|TILS_YERPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21960038|gb|AAM86667.1|AE013912_11 cell cycle protein [Yersinia pestis KIM 10] gi|45437421|gb|AAS62972.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Yersinia pestis biovar Microtus str. 91001] gi|108776746|gb|ABG19265.1| hypothetical protein YPN_2938 [Yersinia pestis Nepal516] gi|108778448|gb|ABG12506.1| hypothetical protein YPA_0538 [Yersinia pestis Antiqua] gi|115346841|emb|CAL19727.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145210628|gb|ABP40035.1| hypothetical protein YPDSF_1650 [Yersinia pestis Pestoides F] gi|149290551|gb|EDM40627.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125] gi|162351278|gb|ABX85226.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola] gi|165912236|gb|EDR30873.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. IP275] gi|165921011|gb|EDR38235.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165989180|gb|EDR41481.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. E1979001] gi|166207106|gb|EDR51586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. B42003004] gi|166962490|gb|EDR58511.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050464|gb|EDR61872.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055706|gb|EDR65490.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679311|gb|EEO75414.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516] gi|229689968|gb|EEO82027.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229697357|gb|EEO87404.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704146|gb|EEO91158.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A] gi|262361117|gb|ACY57838.1| hypothetical protein YPD4_0929 [Yersinia pestis D106004] gi|270335826|gb|EFA46603.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27] gi|294353538|gb|ADE63879.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003] gi|320014196|gb|ADV97767.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 460 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + ++ AI + H L A V++ Sbjct: 18 QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV Q G+ AAAR ARY S A +++TA DDQ ET Sbjct: 77 QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251 DDRF+R +R V L L + F + + L+ + L +++ + Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247 Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + +L +LR A G +P ++R+ L + + Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327 IG + R L++ + + T Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329 >gi|238763959|ref|ZP_04624915.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638] gi|238697776|gb|EEP90537.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638] Length = 461 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 20/331 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H+LV SGG DS LL L + D+ + AI + H L A VR+ C + Sbjct: 23 RHVLVGFSGGLDSSVLLHLLVCL-RDKLIPDLMIRAIHIHHGLNPLADTWVRHCQQQCEQ 81 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I VV TG+ AAAR RY + H +++TA DDQ ET + Sbjct: 82 WNIPLEVVRVNIDARHTGIEAAARTVRYQAFASHLAAN--EVLVTAQHLDDQCETFLLAL 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GLS M + + + + RP L RE + ++ + + W ED SN DDRF Sbjct: 140 KRGSGP--AGLSAMAAKMPFAHS-QLWRPLLAFSRETLENYAQVQRLQWIEDDSNQDDRF 196 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVHMRSIIAISQDIL 257 +R +R + L L + F + + A + L + + L Sbjct: 197 DRNFLRLRI----LPLLTQRWPHFAQAAARSASLCAEQEQLLDELLADNLQQLQNADGAL 252 Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310 +I+ LL ++ +A + GG +P ++R+ L + + +G + Sbjct: 253 SIEGLLLASEVKRAAILRRWLAGGGALMPSQSQLQRLWLEVAMARQDAEPQLILGTHQVR 312 Query: 311 RRANFLWITRAVRNLP-TLILYPEETTVWDG 340 R +L++ + + + + + DG Sbjct: 313 RFRQYLYLLSPLAEIRIPHLSWAKVQAAPDG 343 >gi|332160611|ref|YP_004297188.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606911|emb|CBY28409.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica Y11] gi|325664841|gb|ADZ41485.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 461 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 151/389 (38%), Gaps = 44/389 (11%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + D+ + AI + H L A V++ Sbjct: 18 QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV G+ AAAR RY + H T +++TA DDQ ET Sbjct: 77 QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLVFSRETLENYAQVQRLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247 DDRF+R +R + L L + F + A L+ L Sbjct: 192 QDDRFDRNFLRLKI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247 Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + A+S + +L +LR A G ++P ++R+ L + ++ Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +G + R +L++ + + + +L + +Q G S Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWATVQAGSGSVPVVP 348 Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392 P +P + + + EGG+ L AP Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373 >gi|330860915|emb|CBX71195.1| tRNA(Ile)-lysidine synthase [Yersinia enterocolitica W22703] Length = 461 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 151/389 (38%), Gaps = 44/389 (11%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + D+ + AI + H L A V++ Sbjct: 18 QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV G+ AAAR RY + H T +++TA DDQ ET Sbjct: 77 QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLVFSRETLENYAQVQRLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247 DDRF+R +R + L L + F + A L+ L Sbjct: 192 QDDRFDRNFLRLKI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247 Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + A+S + +L +LR A G ++P ++R+ L + ++ Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +G + R +L++ + + + +L + +Q G S Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWATVQAGSGSVPVVP 348 Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392 P +P + + + EGG+ L AP Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373 >gi|194443631|ref|YP_002039476.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|254789045|sp|B4SV18|TILS_SALNS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|194402294|gb|ACF62516.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 430 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 144/402 (35%), Gaps = 41/402 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 15 RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + + Sbjct: 73 QVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ G + RP LR R+ + + ++ + W ED SN DD ++ Sbjct: 131 RGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R L L + F + + L+ + L + I ++ L Sbjct: 188 RNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTL 242 Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310 + + +R +A + +P ++ER+ + C+ G I Sbjct: 243 RLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREIR 302 Query: 311 RRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 R + LW ++V T + +P T L L + + P Sbjct: 303 RYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEE 355 Query: 370 PIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 356 SVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|163738352|ref|ZP_02145767.1| PP-loop family protein [Phaeobacter gallaeciensis BS107] gi|161388273|gb|EDQ12627.1| PP-loop family protein [Phaeobacter gallaeciensis BS107] Length = 386 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 31/389 (7%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW--- 89 M L+ LH +D ++ +VDH LR T+ +E + V+ ++L +AH ++ W Sbjct: 1 MALMHLLHECFADVG---VEICVATVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQWCDR 57 Query: 90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 + L AR ARYAL++ A+ + + + HT DDQ ET+ MR R G+ Sbjct: 58 PTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLS 117 Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 + + + RP L RE++R++L R W EDPSN D RFERVRVR+ + Sbjct: 118 AMSRSRAME---GVTLLRPLLEVTREELRAYLRTRECCWVEDPSNEDARFERVRVRQAME 174 Query: 210 -----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + L + R ++ + V +I+ + + + Sbjct: 175 VLEPLGLTVERLAAVARNMGAAREALDWYTFLAARDMAEVCDGAIVIDQRQFRTLPDEIA 234 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 LL S G + P M + ++ G G ++G + RA WI R + Sbjct: 235 HRLLVRSVQWVSGAVHPPRRDPMIKARDAVRHG--GSFTLGGCRMITRAQRTWICREYKP 292 Query: 325 LPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQS------YRKADVPSGI----PPI 371 + + P + +WD R++ + +GP +R+ +VP + P + Sbjct: 293 VAEEVALPGK--IWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQTEVPGAVLQATPAV 350 Query: 372 IAQRALSSMPSKEGGKPLLAPFSRFMTKF 400 Q L + P G A + +F Sbjct: 351 WKQDELIAAPLAGNGNGWTAELVQNSEEF 379 >gi|16763626|ref|NP_459241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990123|ref|ZP_02571223.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264644|ref|ZP_02686617.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|61216700|sp|Q8ZRN5|TILS_SALTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|16418741|gb|AAL19200.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205331423|gb|EDZ18187.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205346914|gb|EDZ33545.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267991927|gb|ACY86812.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312911206|dbj|BAJ35180.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225169|gb|EFX50229.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128556|gb|ADX15986.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987188|gb|AEF06171.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 430 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|197249380|ref|YP_002145241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|254789042|sp|B5F8V0|TILS_SALA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|197213083|gb|ACH50480.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 430 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|269958448|ref|YP_003328235.1| putative ATPase [Anaplasma centrale str. Israel] gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel] Length = 447 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 33/408 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL + VAVSGG DSM LL + ++ + ++V+H R A E R V Sbjct: 18 SLDLGSDYAVAVSGGVDSMTLLNLVGMFHKTQATSRP--IVLTVNHGFRAEADYETRCVQ 75 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + ++ W P ARE RY L+ + + ++TAH DQ ET Sbjct: 76 KRALELGLECRILRWGGYIPSKS-QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQAET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M +R G LSGM + ++ N+ I RP L R++I + Q + W EDPSN Sbjct: 135 VLMHLERGSGVDG--LSGMHERSVFG-NITICRPLLNFTRQEILQYATQERLFWVEDPSN 191 Query: 195 TDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 D ++ R R + + + + L + + V + L Sbjct: 192 QDSKYRRTFFRNLIAESKNPGVIIERLCRTTSHMYRALSCILHYVRSSLDDCLEFSPLGF 251 Query: 250 IAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRV 307 I I SQ++ ++ + LL +S GG+ P Y S ++ ++ G ++ Sbjct: 252 ITIKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSSFWPILTQMRQGGDFTPRTLHGC 311 Query: 308 VIDRRANFLW-ITRAVRNLPTLILYPEETTV--WDGRY--QFQNLSDSLIQIGP------ 356 + + ++ + I R + + I + WD R+ + + ++ GP Sbjct: 312 KVFKESDGNFSIVRELARIEGRICVSTTAEIMQWDRRFTIKIVGVHNASHSAGPLSDSQK 371 Query: 357 -------QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396 +P + + + +P G +LA P+ Sbjct: 372 EAHSLYITPLGNGPLPEHL-MHVKRDVARGLPVLAHGDKVLAYPWQNH 418 >gi|315634539|ref|ZP_07889824.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393] gi|315476766|gb|EFU67513.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393] Length = 436 Score = 249 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 132/333 (39%), Gaps = 27/333 (8%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E + L L+ SGG DS LL + + + AI + H L Sbjct: 3 LEQFSQQIHQLAPNQTQFLIGFSGGLDSTALLALFAKLREKQ--PHFQLRAIHIHHGLSA 60 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + +C + I + S + G+ A AR+ARY I++ + + + T Sbjct: 61 NADAWSAHCQQMCRQFHIPLQIQHVNVS-TENGIEAGARQARYEAIAQ--QILPTEWLAT 117 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DQ ET ++ +R +G+G + ++ I RP L R+ + +F+ Q Sbjct: 118 AHHQQDQTETFFLALKRGSGVQGLGAMPSKSNV---YSVPIFRPLLNFSRQQLLAFVQQE 174 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241 +SW ED SN D++++R +R V L L + F + L+ + Sbjct: 175 GLSWIEDESNEDNQYDRNFLRNIV----LPELRQRWAHFDSAVQRSAQHCYEQQQLLNEL 230 Query: 242 LTVHMRSIIAISQDILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERVM---L 292 L + I + + LLR+ G ++LP +E+++ + Sbjct: 231 LAEEYQKNIVKNDRTFQLQHFASYSSVKQRALLRLWLQDWG--VTLPSLVQLEQIISDVI 288 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 F K + + ++ R + L++T ++ Sbjct: 289 FAKDDAQPQFRLDNNIVRRYQHRLFLTPIFNDI 321 >gi|322616060|gb|EFY12977.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620843|gb|EFY17703.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623806|gb|EFY20643.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627254|gb|EFY24045.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322630561|gb|EFY27325.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638221|gb|EFY34922.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640706|gb|EFY37357.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645510|gb|EFY42037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648197|gb|EFY44664.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322657147|gb|EFY53430.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657517|gb|EFY53789.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663837|gb|EFY60037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666670|gb|EFY62848.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672172|gb|EFY68284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676517|gb|EFY72588.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679391|gb|EFY75436.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686282|gb|EFY82266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193462|gb|EFZ78670.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197516|gb|EFZ82651.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201215|gb|EFZ86284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209610|gb|EFZ94543.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212138|gb|EFZ96962.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216443|gb|EGA01169.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223367|gb|EGA07702.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225928|gb|EGA10148.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228531|gb|EGA12660.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236856|gb|EGA20932.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239644|gb|EGA23691.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242309|gb|EGA26338.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249971|gb|EGA33867.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252401|gb|EGA36252.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255684|gb|EGA39437.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262879|gb|EGA46429.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265365|gb|EGA48861.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271848|gb|EGA55266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 430 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLAGDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPFWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|300715415|ref|YP_003740218.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661] gi|299061251|emb|CAX58360.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661] Length = 433 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 103/431 (23%), Positives = 174/431 (40%), Gaps = 56/431 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + L H+LV SGG DS LL L ++ + R G + AI + H L A Sbjct: 2 AMHALAQHLAGHQHLLVGFSGGLDSTVLLHQLVTLRAQR--GDLHLRAIHIHHGLNPLAD 59 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V + +C R ++ VV+ + G+ AAAR+ARY S+H + A ++TA Sbjct: 60 GWVEHCQQLCQRWQVELVVVNVTLDSREKGVEAAARDARYQAFSDHLRP--AECLLTAQH 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET + +R GL+GM L + + RP L R + ++ ++ +S Sbjct: 118 LDDQCETFLLALKRGSGP--AGLAGMPVQSLLGTH-TLLRPLLLQTRGQLEAWAVEHALS 174 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTV 244 W ED SN D RF+R +R+ V + L + F + + L+ + L Sbjct: 175 WIEDDSNQDTRFDRNFLRQKV----IPELTSRWPHFAQSVARSATLCGEQEQLLDELLAE 230 Query: 245 HMRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKS 296 + +++ + +L + LLR A GG +P S++R+ + Sbjct: 231 SLGTLVDAAGGLAWAPLLAMSEVRRAALLRRWIASQGG--LMPSKASLQRLWQEVACSRE 288 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL-YPEETT---VWDG------------ 340 + +GR + R + L+ + +IL +P + DG Sbjct: 289 DAEPRLRLGRFDVRRYRDRLYWLALTEPVTDVILRWPSGEASLRLPDGLGHLLRDDAGIK 348 Query: 341 ------------RYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKP 388 R+Q Q + G ++ +K GIPP R P G+ Sbjct: 349 IRAPLPEEIVSVRFQAQGKFHLTDRAGSRALKKIWQEKGIPPWQRDR----TPLLFYGET 404 Query: 389 LLAPFSRFMTK 399 L+A F+T+ Sbjct: 405 LIAAVGVFVTR 415 >gi|293394728|ref|ZP_06639020.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582] gi|291422854|gb|EFE96091.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582] Length = 436 Score = 249 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 88/404 (21%), Positives = 148/404 (36%), Gaps = 31/404 (7%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V L LVA SGG DS LL L + R +++ A+ V H L A D Sbjct: 7 VTQLAEQLGEHRQWLVAFSGGLDSSVLLHLLVQLRQRR--PELQLRAVHVHHGLSALADD 64 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + C+ ++ V + GL AAAR ARY + + ++TA Sbjct: 65 WVAHCQRQCANWQVPLVVQYVQVESRDGGLEAAARTARYQALQRTLSS--GEALLTAQHL 122 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET + +R G+ T+ + + RP L R + + ++ + W Sbjct: 123 DDQCETFLLALKRGSGPTGLAAMATHGTL---GDSPLLRPLLGVSRRQLEQYAARQQLDW 179 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ED SN D RF+R +R V L L + F + + A + Sbjct: 180 IEDDSNQDARFDRNFLRLQV----LPLLTQRWPHFATAAARSASLCAEQELLLDELLAEQ 235 Query: 249 IIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSG 297 + A++ + + F LLR A+ G ++P ++R+ ++ Sbjct: 236 LQALTDQEQSIAIDGLQACSAPRRFALLRRWIALAG--FTMPSREQLQRLWDEVALARAD 293 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET---TVWDGRYQFQNLSDSLIQI 354 + + + R L++ + +L + L + + DG +I Sbjct: 294 AEPQLQLVHYQVRRYRQRLYLLPPLADLCAVHLPWFDAATLALPDGLGSISRGEGEIIVR 353 Query: 355 GPQSYRKADVP---SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 PQ + V SG I +R S + +AP+ R Sbjct: 354 APQPQQAVSVRFGVSGRLRIAGRRHSRSAKKLW-QELAIAPWQR 396 >gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029] gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 412 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 101/393 (25%), Positives = 162/393 (41%), Gaps = 31/393 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DSM LL I A++VDH LR A DE R V+ VC+ L Sbjct: 19 LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 72 VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + RP L RE++R+ L +R SW EDPSN + F+R Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VRVR+ + + L ++R ++ + + V R + ++ + Sbjct: 189 VRVRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVD-RGDVVLAPPV 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L + +L LLR + P ++ M + G V++ + R L Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368 I R + + +++ E WDGR+ Q + +GP+ A P Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLETRALGPEGL--ARCPDWR 361 Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + +L + PS G L+ AP + + Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394 >gi|238754787|ref|ZP_04616138.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473] gi|238706947|gb|EEP99313.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473] Length = 447 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 19/327 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M P ++ L H+LV SGG DS LL AL +L DR + AI V H Sbjct: 1 MNHDPHPIIKHIASQLQGARHLLVGFSGGVDSSVLLHALM-MLRDRLLPDLVIRAIYVHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + C R IA +V + TG+ AAAR ARY + + Sbjct: 60 GLNPLADSWGEHCQHQCQRWNIALEMVRVQIDPSDTGIEAAARTARYQAFKT--RLASDE 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET + +R GLS M + + + +I RP L R+++ + Sbjct: 118 VLLTAQHLDDQCETFLLALKRGSGP--AGLSAMAALMPFAHS-YIIRPLLALSRQELERY 174 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLI 238 ++W ED SN DDRF+R +R V L L + F + A + Sbjct: 175 ADDYQLTWIEDDSNQDDRFDRNFLRLKV----LPTLSERWPHFSRATARSAELCAEQEQL 230 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERV---M 291 L + L+I ++ +A + G + +P ++R+ + Sbjct: 231 LDELLAEPLQQLQQPDGSLSISGLKAMSDIKRAALLRRWLAGQGVMMPSREQLQRLWDEI 290 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWI 318 + + + I R L++ Sbjct: 291 ALARLDAEPILQLSNHQIRRFRQHLYL 317 >gi|161612610|ref|YP_001586575.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|254789046|sp|A9N0U0|TILS_SALPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|161361974|gb|ABX65742.1| hypothetical protein SPAB_00301 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 430 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + + + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|168823094|ref|ZP_02835094.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205340604|gb|EDZ27368.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084490|emb|CBY94283.1| cell cycle protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 430 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC+R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCAR 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|198244025|ref|YP_002214197.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|254789043|sp|B5FJ36|TILS_SALDC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|197938541|gb|ACH75874.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326621940|gb|EGE28285.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 430 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 146/403 (36%), Gaps = 41/403 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A+ VR+ VC+R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHAESWVRHCETVCAR 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R L L + F + + L+ + L + I ++ Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241 Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309 L + + +R +A + +P ++ER+ + C+ G I Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301 Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 R + LW ++V T + +P T L L + + P Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354 Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397 >gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N] gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N] Length = 412 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 164/393 (41%), Gaps = 31/393 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DSM LL I A++VDH LR A DE R V+ VC+ L Sbjct: 19 LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 72 VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + RP L RE++R+ L +R SW EDPSN + F+R Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VR+R+ + + L ++R ++ ++ + V R + ++ + Sbjct: 189 VRMRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLSEAAGRLARVD-RGDVVLAPPV 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L + +L LL+ + P ++ M + G V++ + R L Sbjct: 248 LELPPEILRRLLQAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368 I R + + +++ E WDGR+ Q + + +GP+ A P Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLEIRALGPEGL--ARCPDWR 361 Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + +L + PS G L+ AP + + Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394 >gi|304396663|ref|ZP_07378544.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB] gi|304356172|gb|EFM20538.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB] Length = 439 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 23/334 (6%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L A ++VA SGG DS LL L + A+ V H L A Sbjct: 5 AFDAMLQPDAALVVAFSGGLDSTVLLHQLRGWQQQ--HPESHLRALHVHHGLSPNADCWA 62 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + VC + ++ V+ + G+ AAAR ARY +S A + +++TA DD Sbjct: 63 AHCLSVCEQWQLPCEVLHVTVDGRENGIEAAARTARYQALS--AALLPGEVLLTAQHLDD 120 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET + +R G+ + + + RP L R+ + ++ + W E Sbjct: 121 QCETFMLALKRGSGPAGLAAMPAARAL---GSHQLLRPLLNQSRQSLETYARTHQLVWIE 177 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMR 247 D SN D R++R +R+ + L ALY + F + + + L+ + LT + Sbjct: 178 DESNQDLRYDRNFLRQRL----LPALYQRWPHFAEATARSAALCSEQEQLLDELLTGQLN 233 Query: 248 SIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERV---MLFLKSGKRG 300 +I L+ ++ LR +A I G +P +++R+ ++ + + Sbjct: 234 ELIQ-PDGSLHFPPLMVMSELRANALLRRWIAGQGGRMPSREALKRIRDEVMASRGDAQP 292 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP-TLILYPE 333 + G+ + R L+ +L T + +P+ Sbjct: 293 KLRFGQAELRRYRQQLYWLPLRSSLRYTELAWPD 326 >gi|123443466|ref|YP_001007439.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090427|emb|CAL13295.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 461 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 150/389 (38%), Gaps = 44/389 (11%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + D+ + AI + H L A V++ Sbjct: 18 QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV G+ AAAR RY + H T +++TA DDQ ET Sbjct: 77 QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + + + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLTFSRETLEHYAQVQRLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247 DDRF+R +R + L L + F + A L+ L Sbjct: 192 QDDRFDRNFLRLRI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247 Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + A+S + +L +LR A G ++P ++R+ L + ++ Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +G + R +L++ + + + +L + +Q G S Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWAKVQAGSGSLPVVP 348 Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392 P +P + + + EGG+ L AP Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373 >gi|227115135|ref|ZP_03828791.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 455 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 25/327 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL+A SGG DS LL L ++ R ++ A + H L A + C R Sbjct: 27 GSILLAYSGGLDSSVLLHLLVAL---RQRSELPIRAAYIHHGLNPLADSWAEHCRQQCER 83 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + +S G+ AAAR ARY + H + + ++TA DDQ ET + Sbjct: 84 WQVPFTSLSVTVEAQNGGIEAAARTARYQALRAHLQ--DGETLLTAQHLDDQSETFLLAL 141 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ T+ + + RP L R + ++ + + W ED SN D+RF Sbjct: 142 KRGSGPAGLSAMAAQSTL---GHHRLVRPLLGISRLQLEAYAQRNQLDWIEDDSNQDERF 198 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 +R +RR + L L + F + A + S+ A+ Q Sbjct: 199 DRNFLRRQI----LPRLTQRWPHFSSAVARSAQLCAEQEQLLDELLEASLQALCQPDGAL 254 Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308 ++ + F LLR A G +P ++R+ + + + + ++ Sbjct: 255 SIDGLVTLSPVRRFALLRRWLAQQGAM--MPAREQLQRLWDEVATSRQDAEPVLQLNQMQ 312 Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335 + R L++ + +L I+ + Sbjct: 313 VRRFRQHLYLLPLMPSLKDPIIPWQSP 339 >gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359] gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359] Length = 461 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 131/350 (37%), Gaps = 24/350 (6%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M I V F + L ++VAVSGG DS+ LL L ++ S + A Sbjct: 1 MMDDLIRKVESFCKKENLLDRQDTVIVAVSGGPDSIALLHILAALQDRWS---LHLVAAY 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEH 113 V+H LR A +E +V + K + A R RYA SE Sbjct: 58 VNHGLRAAAFEEEVFVESQARAVGAEFYCRRIDAAAIAEKQGLSIETAGRNERYAFFSEL 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ A I H DDQ ETV M R G G N I RP L Sbjct: 118 AEKTGAVRIAVGHHEDDQAETVLMHLLRGGGVSGAGAM-------KAKNGLIIRPLLCVP 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKV 230 R+DI + L + N+ W D SN + R R+R + + + + +F + + Sbjct: 171 RQDILTALNEVNLPWRVDESNESREYLRNRIRHDIMPLLKNINPQVTAALNRFASISRQE 230 Query: 231 NNAVAMLIPKYLTV----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 N + K L + + R + ++ L ++R++ I P + + Sbjct: 231 NMYMENEAVKQLKLAERRNERGFYLDIPILTDLHEALQRRVVRLAVQEMTKDIYAPDFAA 290 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 +ER++ ++ V +++ RR L TR V TL E Sbjct: 291 VERILGLCRATSGKQVRFKDLIVYRRGRGLCFTRGVARKATLFTTDREEV 340 >gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong] gi|166988062|sp|A5CFP2|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong] Length = 441 Score = 247 bits (630), Expect = 4e-63, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 154/357 (43%), Gaps = 21/357 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +AVSGG+DS+ L+ L +++ G + + +++DH LR + E YVS +C + Sbjct: 22 KLAIAVSGGTDSLALM-LLVKHWNEKVKG--EITVLTIDHHLRSESTSEADYVSSICQNI 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ H + W + + A AR+ARY L++ + + + ++T H DD +E ++R Sbjct: 79 KLQHVTLHWIHKGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHADDIVENFFIRLL 138 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ I + N+ I RP ++D++ +L Q+NI W DPSN +++ Sbjct: 139 RGAGLAGLSSH----NIFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNNSNKYL 194 Query: 201 RVRVRRFVR------------DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 R +VR ++ ++ + L VNN + + + ++ Sbjct: 195 RTQVRDLLKSMLISFQNNFTVELLKKRIMLSQMHLTRALDSVNNEIIHYVVYAVKIYSAG 254 Query: 249 IIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 I + + S Y +L I G + S++ ++L ++ Sbjct: 255 FAVIDRKLFRQASPEARYAILSYLLMIVGANTKPQRFSSLQHIILHDIQEYNTYKTLHGC 314 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGPQSYRKAD 363 +++ ++ I R + VWD R++ N ++ + + +K+D Sbjct: 315 IVEYSIQYIIIYREFGRCYPRSKVVSNSVVWDYRFKVVDNRKNNRMNLTIDYLKKSD 371 >gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238] gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238] Length = 412 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 113/408 (27%), Positives = 180/408 (44%), Gaps = 31/408 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGGSDS L+ S + + I+VDH LR A DEV V+ L Sbjct: 10 VVLAVSGGSDSTALMHLAAG-----SIDRARLHVITVDHGLRGVA-DEVALVAAQSEDLA 63 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI-MTAHTFDDQLETVYMRSQ 140 + HSV++W+ Q L AAAR R+A I++ A A + MT HT DDQ ETV MR Sbjct: 64 LKHSVLNWQ-WDGQGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTHDDQAETVLMRLA 122 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GL+GM L I RP L+ R D+R++L + ++W +DPSN D RF+ Sbjct: 123 RGSGV--AGLAGMQSVGATPTGLRICRPLLQETRADLRAWLSEHGVTWSDDPSNDDLRFD 180 Query: 201 RVRVR---RFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RV+ R + ++ L L Q R ++ + AM+ ++T + ++ + Sbjct: 181 RVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTDYAAMIAQSHITQSVGDVVFPATW 240 Query: 256 ILNID-------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + D L F V GG P + + + G+ G ++ + Sbjct: 241 PNHGDVAIRLFRHALHFVGGGVGCGGAGGGDYPPRSDATLSLWQAAQDGQGG--TLHGCL 298 Query: 309 IDRRANFLWITRAVRNLPTLILYPEET--TVWDGRYQFQNLSDSLIQ----IGPQSYRKA 362 + + I+R V P +P WD R+ +S + Q + Sbjct: 299 VSVEDDHWRISREVAATPAPTSWPNRNRDLRWDNRWLLSEISGANTQGDLTVRALGDAIK 358 Query: 363 DVPSGIPPIIAQRALSSMPSK-EGGKPLLAPFSRFMTKFDLPVAYAFS 409 DVP+ + +R+L + P+ EG + AP + + FD + F+ Sbjct: 359 DVPNWRDVGLPRRSLMASPAVFEGESLVAAPIAGHQSGFDARIVADFA 406 >gi|238796629|ref|ZP_04640136.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969] gi|238719607|gb|EEQ11416.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969] Length = 437 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 19/320 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L LV SGG DS LL L + D+ ++K AI + H L A D V++ Sbjct: 4 QLGGHRDFLVGFSGGLDSSVLLHLLVCI-RDQLIPELKVRAIHIHHGLNPLADDWVKHCQ 62 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C R +I VV G+ AAAR ARY S H +++TA DDQ ET Sbjct: 63 QQCERWQIPLEVVRVSIDPRHNGIEAAARTARYQAFSSHLAAN--EVLLTAQHLDDQCET 120 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + S+ + + W ED SN Sbjct: 121 FLLALKRGSGP--AGLSAMAARMPFAHS-QLLRPLLTFSREMLESYARTQQLQWIEDDSN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 DDRF+R +R V + L+ + + + L+ + L ++ + Sbjct: 178 QDDRFDRNFLRLRVLPL-LNHRWPHFAQATARSASLCAEQEQLLDELLADSLQQL-KNHH 235 Query: 255 DILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305 L+I+ +L +LR A G S+P ++R+ L + +++G Sbjct: 236 SALSIEGLILATDAKRGAILRRWLA--GEGASMPSQSQLQRLWLEVAMARPDAEPQLTLG 293 Query: 306 RVVIDRRANFLWITRAVRNL 325 + R L++ A++ + Sbjct: 294 AYQVRRFRQHLYLIPALKEI 313 >gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11] gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11] Length = 383 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 17/375 (4%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL LH +D + +VDH LR+ + DE V+ ++L ++H V+ W++ Sbjct: 1 MALLHLLHDCFADVG---VTLCVATVDHGLRDGSHDEAMMVAAEAAKLGLSHDVLEWRDR 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 L AR ARY L++ A+ + ++I HT DDQ ET+ MR R GLS Sbjct: 58 PEGGNLQDEARNARYGLLTNWARINDLSVIALGHTADDQAETLLMRLGRASGV--SGLSA 115 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 M D + + RP L R+ +R++L ++ ++W +DPSN D RFER+R+R+ + + Sbjct: 116 MPRMRAMD-GVSLMRPLLDVTRDQLRAYLRKKQVAWVDDPSNEDTRFERIRIRQAMASLA 174 Query: 213 -----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + L + R ++ + + L + +I+ ++ + + L Sbjct: 175 PIGLTVERLAAVAQNLGAAREALDWYTFLAAREMLEIRDGAIVIDQREFRTLPDEIAHRL 234 Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327 L + GG + P M + + G G ++ I R +WI R V+ + Sbjct: 235 LVRAVQWVGGAVYPPRRDPMMQAQRTARQG--GSFTLAGCRILTRVQKVWICREVKRVAD 292 Query: 328 LILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386 ++ P T WDGR++ Q+ S A VP + L + P+ Sbjct: 293 EVVEPGAT--WDGRWRIYGGDIHGHQVRALGSVGLAQVPDWRSTGLPGPVLEATPAVWQN 350 Query: 387 KPLL-APFSRFMTKF 400 L+ AP + F + Sbjct: 351 HHLVAAPSAGFAQGW 365 >gi|170717655|ref|YP_001784732.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336] gi|226695541|sp|B0UUD3|TILS_HAES2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|168825784|gb|ACA31155.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336] Length = 427 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 23/346 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +L+ SGG DS LL L + + + AI + H L + A + + Sbjct: 14 FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQ--PHLSLRAIHIHHGLSQNADNWAIHCRQ 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C +L I+ + P+ G+ A AREARY I+ H + +++TAH DQ ET Sbjct: 72 ICQQLDISFLCEKVTIN-PRKGIEADAREARYQAIANHLQDN--EILVTAHHQQDQTETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R +G+G + + NL I RP L C ++ + + +SW ED SN Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTKQQLEQYAKTEKLSWIEDESNA 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D+R+ER +R + L + + + LI + L I Sbjct: 186 DNRYERNFLRNDILP-KLRQRWQSIDNAVQRSAQHCFEQQQLINELLNDEFNKIYDKFDR 244 Query: 256 ILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 L+I + + +L+ A + I +P ++ + M+ + + +G V Sbjct: 245 TLSIANFATYSILKQKALLRTWLQHLHILMPSTIQLDNIMRNMIQAQEDRNPTCRLGNQV 304 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 + R L+ T +++L + L + + NL D+L +I Sbjct: 305 LRRYQKRLYATPILQDLSHIRLDIQAN-------ECINLPDNLGEI 343 >gi|322831607|ref|YP_004211634.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602] gi|321166808|gb|ADW72507.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602] Length = 447 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 26/349 (7%) Query: 8 SVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +V F + L+ + VA SGG DS LL L + D++ I+ A+ + H L Sbjct: 6 TVTFLSKHLLNKIGDARRLCVAFSGGLDSSVLLAGLAEL-RDKALPDIELRALHIHHGLS 64 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + A D V + C + I SV + + G+ AAAR ARY +E +++ Sbjct: 65 QFADDWVAHCQTFCQQRDIPFSVAKVQVDAQEGGIEAAARTARYQAFAE--SLTAGEVLL 122 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TA +DQ ET + +R G+ + + RPFL RE + + Q Sbjct: 123 TAQHLNDQCETFMLALKRGSGPAGLSAMSGDSST---HGYRLLRPFLELSREQLEEYAKQ 179 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + W ED SN D RF+R +R + ALY + F + + A Sbjct: 180 LKLCWIEDDSNRDARFDRNFLRLDI----FPALYQRWPHFAQATARSASLCAEQETLLDE 235 Query: 244 VHMRSIIAIS--QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFL 294 + S+ +++ Q L+++ F +R SA + +P ++R+ Sbjct: 236 LLSESLTSLTDEQGSLSVERLKAFSAVRRSALLRRWLALRGARMPSREQLQRIWDEVALS 295 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDG 340 + + + +G++V+ R L++ R+L IL E+ T+ DG Sbjct: 296 REDAQAQLVLGKMVVRRFRGRLYVLPERRSLKDQILCWDPAEKLTLPDG 344 >gi|114771183|ref|ZP_01448603.1| PP-loop family protein [alpha proteobacterium HTCC2255] gi|114548108|gb|EAU50995.1| PP-loop family protein [alpha proteobacterium HTCC2255] Length = 423 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 164/385 (42%), Gaps = 23/385 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +I ++VSGG DS+ LL K +VDH LR+ + +E + V D+ Sbjct: 24 ISGDNIGLSVSGGGDSIALLYLTKEWACKNDK---KIFVATVDHGLRKESLNEAQTVKDI 80 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L I ++++W + L AAR AR LI A ++ + T HT DDQ ET Sbjct: 81 CRSLGIECTILNWTDWDKSGNLQDAARSARNRLIGNWANSLGLDAVATGHTADDQAETFL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R R G LSGM +IL + LW RP L R ++R +L I+W +DPSN + Sbjct: 141 LRLARGSGVDG--LSGMASSILKEGMLW-FRPLLEFHRSELRDYLNINKITWFDDPSNEN 197 Query: 197 DRFERVRVRR---FVRDIDLHA--LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +F+RV++R+ F+ ++ L L ++ R + I + + Sbjct: 198 MKFDRVKMRKAQSFLNNMGLTISCLNETAQRMSVARNALELVSKEKIENITEITKMGTVM 257 Query: 252 IS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + ++ + + + G I P + S+ + L + K +I + Sbjct: 258 LDLEEFKLLPVEVQNRIYSHILKWISGSIYRPRFISLTESIKKLLNCK--THTISGCHVT 315 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD----SLIQIGPQSYRKADVPS 366 I R V + + E+ +DGR+ ++ S S+ +G R+ P Sbjct: 316 SNGRSAEICREVSKIIKSNSFSEK---FDGRWILESKSSKEELSIGPLGEAGLRQ--FPD 370 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391 +++ ++ P+ + L+A Sbjct: 371 WRELNMSRISILGSPAIWKDELLIA 395 >gi|113461077|ref|YP_719145.1| cell-cycle protein [Haemophilus somnus 129PT] gi|123132098|sp|Q0I3D1|TILS_HAES1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|112823120|gb|ABI25209.1| cell-cycle protein [Haemophilus somnus 129PT] Length = 427 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 23/346 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +L+ SGG DS LL L + + + AI + H L + A + + Sbjct: 14 FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQ--PHLSLRAIHIHHGLSQNADNWAIHCRQ 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C +L I+ + P+ G+ A AREARY I+ H + +++TAH DQ ET Sbjct: 72 ICQQLDISFLCEKVTIN-PRKGIEADAREARYQAIANHLQDN--EILVTAHHQQDQTETF 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R +G+G + + NL I RP L C R+ + + +SW ED SN Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTRQQLEQYAKTEKLSWIEDESNA 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D+R++R +R + L + + K + LI + L I Sbjct: 186 DNRYDRNFLRNDILP-KLRQRWQHIDKAIQRSAQHCFEQQQLINELLNDEFNKIYDKFDR 244 Query: 256 ILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 L+I + + +L+ A + I +P ++ + M+ + + +G V Sbjct: 245 TLSIANFATYSILKQKALLRTWLQHLHILMPSTIQLDNIMRNMIQAQEDRNPTCKLGNQV 304 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 + R L+ T +++L + L + + NL D+L +I Sbjct: 305 LRRYQKRLYATPILQDLSHIRLDIQAN-------ECINLPDNLGEI 343 >gi|323495345|ref|ZP_08100423.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546] gi|323310416|gb|EGA63602.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546] Length = 439 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 155/394 (39%), Gaps = 27/394 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG DS +L + +R +++ AI V H L A C Sbjct: 19 KRLVLGLSGGLDSRVMLELMAEYCHNR---QLECLAIHVHHGLSANADQWAMQCQHWCDS 75 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + L +AREARY I+ H + L++T DDQLET + Sbjct: 76 LGVPLVIERVQLDSKGRSLEESAREARYQAIARHL--NDDDLLLTGQHCDDQLETFLLAL 133 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M + + +L I RP L R+ I + Q +SW ED SN D RF Sbjct: 134 KRGSGPKG--LSAMAHAMPFASSL-IVRPLLTSTRQQIEEYARQHQLSWVEDESNLDQRF 190 Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R + +Y +++ +L + + L+ T S ++ Sbjct: 191 DRNFIRHTISPPLIERWPQIYQSVQRTAELCAEQEALLDELLADKFTSVHCSDGSLDITK 250 Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRR 312 L + L+R+ A G + +P ++ + + + I + R Sbjct: 251 LATYSDAVRSRLIRMWLA--GQDVRMPSREQLKLIWPQVACAQQDANPQLVIIDGQVRRY 308 Query: 313 ANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 A L++ + ++L + E+T + D S + Q+ Q+ + Sbjct: 309 AGRLYLVKQWQSLANWKQAIELEQTCQLPDSLGSLSLRSAANGQLSKQALSN----GKLE 364 Query: 370 PIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 I + L++ P G L + ++D+P Sbjct: 365 VIFEPQGLTAHPVGRGHSRKL---KKLFQEYDIP 395 >gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1] gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1] Length = 412 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 161/393 (40%), Gaps = 31/393 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DSM LL I A++VDH LR A DE R V VC+ L Sbjct: 19 LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVGRVCADLG 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ + LM AR AR LI+ A+ + HT DD ET MR R Sbjct: 72 VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + + RP L RE++R+ L +R SW EDPSN + F+R Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VR+R+ + + L ++R ++ + + V R + ++ + Sbjct: 189 VRMRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVD-RGDVVLAPPV 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L + +L LL+ + P ++ M + G V++ + R L Sbjct: 248 LELPPEILRRLLQAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368 I R + + +++ E WDGR+ Q + +GP+ A P Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLETRALGPEGL--ARCPDWR 361 Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + +L + PS G L+ AP + + Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394 >gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1] gi|167710570|gb|EDS21149.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1] Length = 480 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 137/316 (43%), Gaps = 24/316 (7%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ + V+ F++ + HI++ VSGG+DS+ LL+ L+ + R + +A+ ++ Sbjct: 10 VNYMNKVKEFIKEKNLIQNGDHIIIGVSGGADSVYLLLILNEL---RESMNLTITAVHIN 66 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 H +R A D+ ++V D+C +L I + + + L A R+ARY ++ K Sbjct: 67 HMIRREAVDDQKFVQDLCGQLSILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMK 126 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 NA I AH +DQ ET R R G G + + + RP L ++E Sbjct: 127 KYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAM-------REKDGNLIRPLLCVKKE 179 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV 228 +I +L + +W ED SN DD F R ++R V + + + + +++ Sbjct: 180 EIVKYLKEAGQAWVEDASNQDDAFARNQIRNQVIPRLEMINEQAVEHIGWLCEDIKEVTT 239 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + + + + + +L + + +L+ G+ R +E Sbjct: 240 YLTDQIEESFLRCAKPIGQGFEINCDQLLLENHWIQKQVLKKVLEETAGKKKDLERRHIE 299 Query: 289 RVMLFLKSGKRGCVSI 304 ++ +++G +S+ Sbjct: 300 DLLTLVENGTGKRISL 315 >gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601] gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601] Length = 448 Score = 245 bits (627), Expect = 8e-63, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 151/404 (37%), Gaps = 40/404 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I++AVSGG DSM +L H+ + ++VDH LR A +E V + C Sbjct: 24 FPSDIVLAVSGGGDSMAMLTLAHNWA---HVWGTRLWVVTVDHGLRPEAGNEAALVRETC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L H+ + W+ Q LM AAR AR LI + ++ AHT DD ET M Sbjct: 81 DELGHPHTTLRWR-WDGQGNLMDAARRARLDLIGRW--RGGLSHVLLAHTRDDVAETFLM 137 Query: 138 RSQRDYAEKGMGLS---------------------GMCDTILYDLNLWISRPFLRCRRED 176 R R G+ L I RP L RR + Sbjct: 138 RLARGSGVDGLSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCLDMRRAE 197 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 +R +L W EDP+N DD +ER R+R+ +R ++ L + R+ Sbjct: 198 LRHYLRVLKGRWVEDPTNEDDHYERARIRKLLRGLEAEGLGAETLAATAGRMGRAREALR 257 Query: 237 -----LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + +D ++ LL + P ++E + Sbjct: 258 ARAVWAWEQCGQEGGAGDLVFERDRFAALERDTQLRLLAAALQWVASAEYRPRAAALEGL 317 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL--- 347 + L SG G + + L + R + + +T +WDGR++ + Sbjct: 318 LERLLSGGAGTLM--GCAARAERDRLRVWREYAAVAGTSVTVGDTALWDGRWRVFHPDLR 375 Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 ++ +G + +R+A + +PS G+ L A Sbjct: 376 GHTVQALGEEGWRQAA--PAREAHVPHALALCLPSVWQGETLRA 417 >gi|84389775|ref|ZP_00991327.1| Cell cycle protein MesJ [Vibrio splendidus 12B01] gi|84376876|gb|EAP93750.1| Cell cycle protein MesJ [Vibrio splendidus 12B01] Length = 444 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 91/409 (22%), Positives = 152/409 (37%), Gaps = 36/409 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +S + P ++VA SGG DS LL I+ A+ V H L + A Sbjct: 14 QSALKPNRLIVAFSGGVDSRVLLELAAQYAQTHG---IECCAVHVHHGLSKNADHWAEQC 70 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L ++ +V + + AR+ARY +H +++T DDQL Sbjct: 71 QTWCDALSVSLAVERVSLDIDSGESVEKLARDARYNAFQKHLSF--GDVLITGQHIDDQL 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + N I RP L R DI ++W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAKMMPFA-NAHIVRPLLSVTRTDIEGAARDMALTWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK-------YLTVH 245 SN D RF+R +R V L + F+D + A + Sbjct: 186 SNQDLRFDRNFIRHQVTPT----LTERWPNFRDAVSRSAQLCAEQELLLDELLESHFQQA 241 Query: 246 MRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 + +S + L+ S LL LLR+ + C +P + ++ + ++ Sbjct: 242 LGDSQNLSVEALSQHSDLLRARLLRMWLSHCNQ--PMPSKKQLKLIWDEVACAQADANPK 299 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYP---EETTVWDG----RYQFQNLSDSLIQI 354 + + + R + L++ R ++L + E T+ DG R Sbjct: 300 LVLNDAEVRRFNHQLYLVRETKDLSDWQSHLSMGESLTLPDGLGELRLNSALSDGESNNR 359 Query: 355 GPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 QS+ +D + + I LS+ P G L + ++ +P Sbjct: 360 DVQSFSLSDTSATLRVIFNPEGLSAHPVGRGHSRKL---KKLFQEYQVP 405 >gi|146310390|ref|YP_001175464.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638] gi|254789036|sp|A4W6T3|TILS_ENT38 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|145317266|gb|ABP59413.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638] Length = 426 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 79/406 (19%), Positives = 136/406 (33%), Gaps = 35/406 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +S+ +LV SGG DS LL L ++ AI V H L A V + Sbjct: 7 AQSVFPYRQLLVGFSGGLDSTVLLHRLMLWREQ--EPDVQIRAIHVHHGLSSNADHWVAH 64 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C I V K G A AR+ARY + + ++TA DDQ Sbjct: 65 CESLCKSWHIPLIVERVKLRDEGLGTEAQARKARYLAFEKTLQA--GEALVTAQHLDDQC 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G+ + RP L R + + N+ W +D Sbjct: 123 ETFLLALKRGSGPAGLSAM---PVRTEFAGSQLIRPLLGETRTSLEKWAQDYNLCWIDDE 179 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN DDR++R +R V L L + F D + A + + ++ Sbjct: 180 SNQDDRYDRNFLRLRV----LPLLSERWPHFADATARSAALCAEQESLLDELLTEELASV 235 Query: 253 --SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVS 303 ++ L I+ +R +A + +P + R+ + + Sbjct: 236 ISTEGRLRIEPLEAMSPVRRAALIRRWLAAHHAQMPSRTMLNRIWEEVALAREDATPRLH 295 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 +G + R LW + + I+ + +V L + + + Sbjct: 296 LGGFEVRRYKGELWWVKYQPTMIDQIIEWRDPSV------TLMLPQGSVCFADGGHIRLP 349 Query: 364 VPSGIPPIIAQR-ALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P I + + + + GG+ L + P+ R T Sbjct: 350 NPDEQVTIRFKACGILHIVGRHGGRKLKKIWQEYNIPPWLRDTTPL 395 >gi|251792238|ref|YP_003006960.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700] gi|247533627|gb|ACS96873.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700] Length = 436 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E +R L L+ SGG DS LL + ++ + AI + H L Sbjct: 3 LEQFSQRLRQLAPNQTQFLIGFSGGLDSTALLALFAKLRENQ--PHFQLRAIHIHHGLSS 60 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + ++C + +I + + G+ A AR+ARY I++H + T Sbjct: 61 NADAWATHCENLCRQFQIPLLIQRVNVNI-ANGIEAGARQARYEAIAQHILPQ--EWLAT 117 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DQ ET ++ +R +G+ T+ N+ I RP L R+ + +F+ Q+ Sbjct: 118 AHHLQDQTETFFLALKRGSGLQGLSAMQAQSTV---YNVPIFRPLLSFSRQQLLNFVQQQ 174 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241 I+W ED SN D++++R +R + L L + F + L+ + Sbjct: 175 GITWIEDESNADNQYDRNFLRNQI----LPDLRQRWGHFDSAVQRCAQHCYEQQQLLNEL 230 Query: 242 LTVHMRSIIAIS------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML--- 292 L + + + Q + + LLR+ CG +++P +E ++ Sbjct: 231 LAEEYQKNVDKTDRTFKVQHFADYSAIKQRALLRLWLQECG--VAMPSLVQLEHLISDVV 288 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 F K + + ++ R + L++T ++ Sbjct: 289 FAKPDTQPQFRLENNIVRRYQHKLFLTPIFADI 321 >gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] gi|151280695|gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille] Length = 462 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 17/333 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A I +A SGG DS LL LH+ + +I+ A V H L A D + + C Sbjct: 22 AKAKIALAYSGGLDSAALLHLLHAYGLAQ---QIEIFAFHVHHGLSPNADDWLAHCRAQC 78 Query: 78 SRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + L + + ++ + G+ AAR++RYA + + + L++TAH DDQ ETV Sbjct: 79 AALGVVFDARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAETVL 138 Query: 137 MRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R G+ +L D NL + RP L+ RRED+++++ I + ED S Sbjct: 139 LQLLRGSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQFVEDES 198 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D R+ R +R V ++F +A +LI + + Sbjct: 199 NLDPRYARNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDLQQCLDGEC 258 Query: 254 QD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 D + + + +LR + G + +P + + +L K + CV+ Sbjct: 259 VDVTKLRQFSADRIDNMLRYWFGLRG--VRMPSTAWLNEMRTQLLEAKHDAQLCVTHADC 316 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 I R + ++IT P L+L P + W G Sbjct: 317 HIRRHRDRVYITPKFD--PDLLLQPPRSFNWQG 347 >gi|291616365|ref|YP_003519107.1| TilS [Pantoea ananatis LMG 20103] gi|291151395|gb|ADD75979.1| TilS [Pantoea ananatis LMG 20103] Length = 435 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 74/354 (20%), Positives = 132/354 (37%), Gaps = 24/354 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F L ++VA SGG DS LL L + R + + A+ V H L A Sbjct: 4 FDALLKENDALVVAFSGGLDSTVLLHQLRAWQQAR--PQSRLRALHVHHGLSPNADSWAA 61 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +C R +I V+ + + G+ AAAR+ RY + + ++TA DDQ Sbjct: 62 HCLCLCERWQIPCEVLRVQVTDQGQGIEAAARQVRYQALGQALCA--DEKLLTAQHLDDQ 119 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + +R G+ T + RP L R + + + W ED Sbjct: 120 CETLLLALKRGSGPAGLAAMPAATTF---AGHALLRPLLNHSRLSLEQYAEAHQLVWVED 176 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN D R++R +R+ + L + + + L+ + L + +I Sbjct: 177 ESNQDQRYDRNFLRQQLLPTVL-RRWPHFAEASARSAALCGEQEQLLDELLAEPLSELIQ 235 Query: 252 ISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVS 303 +L + LLR A G +P ++ R+ ++ + + + Sbjct: 236 PDGSLCFTPLLTMSEVKGNALLRRWLAAQG--EKMPSREALRRIRQEIMLCREDAQPRLK 293 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 +G I R L+ +LP + W+ Q +L +L + + Sbjct: 294 LGNHEIRRYRQQLY------HLPLSASLADCEIAWNDVEQPLHLPQNLGVLTAE 341 >gi|172087739|ref|YP_205328.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114] gi|171902329|gb|AAW86440.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114] Length = 456 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 82/355 (23%), Positives = 137/355 (38%), Gaps = 33/355 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V H++VA+SGG DSM LL ++ +++ A+ V+H L A D + Sbjct: 29 VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSLHANDWEVSCASY 85 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L I + PQ L AR+ARY + ++ ++ +L++T DDQ+ET Sbjct: 86 CKELDIPLYIERVNLKVSPQESLEEVARKARYHALEKYMQSN--SLLLTGQHQDDQVETF 143 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ +R GLS M I RP L R+ I + Q ++W ED SN Sbjct: 144 FLALKRGSGP--AGLSSMPSIIPLKTGYK-CRPLLFTSRQHITEYAQQHQLTWVEDESNQ 200 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D RF+R +R + + L + F + A + + + + Sbjct: 201 DTRFDRNFLRHEITPV----LSQRWPSFASAVSRSAQLCAEQEALLVELLQPKLQLFQNE 256 Query: 256 -----ILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304 I I+ L LLR+ + I LP + + + C+ + Sbjct: 257 FQGLSIKQIEPESLASRNMLLRLWLKLF--AIPLPSQTQLHILWNEVAMAQQDANPCLEL 314 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYP-EETTVWDG------RYQFQNLSDSLI 352 G V I R +++ ++L + + D R +F N S I Sbjct: 315 GIVQIRRYQGYIYCVPKYQDLSLWKKALEGKIALPDNLGELELRAKFSNHEKSSI 369 >gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ] gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ] Length = 447 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 14/341 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +R +V A VAVSGG DSM L+ L ++ S + ++V+H R A++EV + Sbjct: 1 MRDIVPNAQYAVAVSGGVDSMTLMR-LVALFHKSSASVGSPTILTVNHGFRPEARNEVSF 59 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + L + ++ W+N + AR RY L+ + N +++TAHT +DQ Sbjct: 60 VHKQATMLGLECHMLHWENPIRKKS-QVVARNIRYQLLLQWCSAHNVKVLLTAHTKNDQA 118 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R +R G L+G+ + + ++ I RP L R +I+ + +Q W EDP Sbjct: 119 ETVLIRLERGSGIDG--LAGIRERSVIG-DVTIIRPLLDFTRREIQEYAIQHQQPWIEDP 175 Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 SN+D ++ R R F+ + I + L Q + + V + L Sbjct: 176 SNSDPKYRRTFYRNFINNCKHPEILISRLSSTALHMQRSLSCILHYVQNALDSCLEFTPF 235 Query: 248 SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 + I D+ N+ + L + G + P + + ++S ++ Sbjct: 236 GYVVIKHDVFRNLQDEIASRLFLLLIMTIGNKPLKPRFSKFSSALSKVRSTAGFASFTLH 295 Query: 306 RVVI-DRRANFLWITRAVRNL-PTLILYPEETTVWDGRYQF 344 +I + + + R V ++ P L+ E +WD R++ Sbjct: 296 GCMILKTCDSNIIVAREVSSIVPKTYLHGETRLLWDSRFEL 336 >gi|197334782|ref|YP_002156773.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11] gi|197316272|gb|ACH65719.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11] Length = 456 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 26/321 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V H++VA+SGG DSM LL ++ +++ A+ V+H L + A D + Sbjct: 29 VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSKHASDWEVSCASY 85 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L I + PQ L AR+ARY ++ +H + +L++T DDQ+ET Sbjct: 86 CEELDIPLYIERVNLKVSPQESLEEVARKARYHVLEKHMRAN--SLLLTGQHQDDQVETF 143 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ +R GLS M I RP L R+ I + Q ++W ED SN Sbjct: 144 FLALKRGSGP--AGLSSMPSIIPLKTGYK-CRPLLFTSRQHITEYAQQHQLTWVEDESNQ 200 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D RF+R +R + + L + F + A + + + + Sbjct: 201 DTRFDRNFLRHEITPV----LSQRWPSFASAVSRSAQLCAEQEALLVELLQPKLQLFQNE 256 Query: 256 -----ILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304 I I+ L LLR+ + I LP + + + C+ + Sbjct: 257 FQGLSIKQIEPESLASRNMLLRLWLKLF--AIPLPSQTQLHILWNEVAMAQQDANPCLDL 314 Query: 305 GRVVIDRRANFLWITRAVRNL 325 G V I R +++ +++ Sbjct: 315 GIVQIRRYQGYIYCVPKYQDV 335 >gi|260775269|ref|ZP_05884166.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260608450|gb|EEX34615.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 444 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 25/323 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + +++A+SGG DS LL + + + A+ V H L A D Sbjct: 13 QHRLPDGKLVLALSGGLDSRVLLSLMARYCREHQQEGL---AVHVHHGLSSNADDWAEQC 69 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 CS I ++ K + +AREARY +S++ L++T DDQ E Sbjct: 70 KQWCSEDGIPFNLERVTLEKSGKSIEESAREARYQALSKYVSKE--DLLLTGQHSDDQFE 127 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R KG LS M + + L + RP L R D++++ + + W ED S Sbjct: 128 TFLLALKRGSGPKG--LSAMAQAMSFGEAL-LVRPLLAVSRSDVKAYAVAEQLQWVEDES 184 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250 N D RF+R +R V + + + F + A L+ + LT + ++ Sbjct: 185 NQDTRFDRNFIRHQVAPV----ITRRWPHFSQAVQRSAELCAEQEQLLDQLLTERLVEVL 240 Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302 + N+ + LLR+ + Q +P + +V + + Sbjct: 241 HQDGSLWIEPLQNMTPLMRARLLRMW--LSHHQARMPSREQLNKVWQEVALSRQDANPAL 298 Query: 303 SIGRVVIDRRANFLWITRAVRNL 325 SI + R L++ + L Sbjct: 299 SISGGQVRRFEQRLYLVEQWQEL 321 >gi|212212130|ref|YP_002303066.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212] gi|212010540|gb|ACJ17921.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212] Length = 449 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F+ +L ++ +A SGG DS L+ A+ + + + A+ ++H L A Sbjct: 15 EKLIKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + +C+RL+I S +P + A AR+ARYA+ + ++TA Sbjct: 72 NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET ++ R KG+ + + RP L R+D++ + + N Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKNN 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W ED +N + RF R +R V I ++ + + + + + L L Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 + + +L + +LR + G Q LP + +E++ +L Sbjct: 247 QLIQKDSELEIPPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330 S + I R L+++ A+ L Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335 >gi|238784898|ref|ZP_04628898.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970] gi|238714215|gb|EEQ06227.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970] Length = 451 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 133/318 (41%), Gaps = 15/318 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L + LV SGG DS LL L + D+ ++K AI + H L A V++ Sbjct: 18 QLGGQRNFLVGFSGGLDSSVLLHLLVCI-RDQLIPELKVRAIHIHHGLNPRADGWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C R +I VV G+ AAAR ARY S H +++TA DDQ ET Sbjct: 77 QQCERWQIPLEVVRVSIDPRHNGIEAAARSARYQAFSSHLAA--DEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAARMPFAHS-QLLRPLLTLSRETLENYARIQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 DDRF+R +R V + LH + + + L+ + L ++ + Sbjct: 192 QDDRFDRNFLRLRVLPL-LHHRWPHFAQATARSAGLCAEQEQLLDELLAESVQQL-KNHH 249 Query: 255 DILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307 L+I+ LL + +A + +P ++R+ L + +++G Sbjct: 250 GALSIEGLLLASEAKRAAIVRRWLAERGALMPSQSQLQRLWLEVAMARQDAEPQLTLGAY 309 Query: 308 VIDRRANFLWITRAVRNL 325 + R L++ A++ + Sbjct: 310 QVRRFRQHLYLVPALQEI 327 >gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53] gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53] Length = 392 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 166/391 (42%), Gaps = 21/391 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F + L + +AVSGG DS+ LL ++ + S SVDH LR + E Sbjct: 6 FAQLLQGGTPVGLAVSGGGDSIALLHLAAAIGG-------RISVASVDHGLRPESAAECG 58 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V+D+C+ + H + W + L AR ARY L+++ A+ I HT DDQ Sbjct: 59 MVADICTSYGLPHQTLKWTGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADDQ 118 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ M R G L+GM + D L RP L+ R +R++L+ WC+D Sbjct: 119 AETIVMALARGAGVGG--LAGMAAVMSRD-GLHYHRPLLQVTRVALRAYLVATGRVWCDD 175 Query: 192 PSNTDDRFERVRVRRF---VRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 PSN D +ER+R+R+ + ++ L L + ++ A L + + Sbjct: 176 PSNDDPAYERIRIRQAADTLAELGLTSQTLGQVAQHMATATEALDRGTADLAAAVM-MPQ 234 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + I + ++ L+ + +I+ P +R+M L G+ V++G Sbjct: 235 SGDVLIMLALRDLSREQARRLVLAAMERVHRRITPPRKDEQQRLMHALLQGQG--VTLGG 292 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 ++ L ++R + + ++ T +WD R++ +Q+ Sbjct: 293 CLMTFDGPVLRVSREPQAVAQIVTP--TTALWDARWRLSGPHAPDLQLRALGAGIELCCD 350 Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRF 396 + +R+L + P+ + L+ AP + F Sbjct: 351 WRRSGLPRRSLQATPAVWRDQTLVSAPLAGF 381 >gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like [Jannaschia sp. CCS1] gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1] Length = 422 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 162/389 (41%), Gaps = 30/389 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I +AVSGG DSM +L H G ++VDH LR ++ E V+ C Sbjct: 21 FPSDIALAVSGGGDSMAMLTLAHGWARVYGVG---LHVVTVDHGLRSASRQEAEMVAKEC 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W+ Q L AAR AR +LI A ++ AHT DDQ ET+ M Sbjct: 78 AVLGHPHTTLKWQ-WDNQGNLQDAARRARLSLIG--AWRGQIAHVLFAHTRDDQAETMLM 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G LS M +T D++ W + RP L R D+R + + + +DPSN D Sbjct: 135 RLLRGSGVDG--LSAMAET--RDMDGWQVIRPLLSETRADLRHYADVLRVPYVDDPSNED 190 Query: 197 DRFERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT------VHMRS 248 + F+RVR+R ++ +D AL + R + + +T + Sbjct: 191 ETFDRVRLRGTIKALGMDTRALANTAARMGRARTALEARAVDVARACVTEDRWEWMPTGD 250 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 ++ ++ +L + P +E ++ SG G + R Sbjct: 251 LLIDRDRFAEVEPDTQLRVLAGALQWVTTADYRPRAAPLEDLLDRALSGGGGTLHGARTT 310 Query: 309 IDRRANFLWITRAVRNLPTLILYPE-ETTVWDGRYQFQNLSDSLIQ----IGPQSYRKA- 362 I + ++R + + E +WD R+Q + + +GP +++A Sbjct: 311 IR--GAHIRVSREFDAIEGTEVALGSEAVIWDTRWQVFSTDVPSGRRVRALGPDGWQQAT 368 Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 D P PP A +P+ G L+A Sbjct: 369 DKPDHPPPH---DAAICLPALFEGDRLVA 394 >gi|239832779|ref|ZP_04681108.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301] gi|239825046|gb|EEQ96614.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301] Length = 463 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 190/452 (42%), Gaps = 38/452 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M LSP + F A ++ AVSGGSDS+GLL L ++ + A +VD Sbjct: 1 MGLSPSNIFKLFEPFGFEQARAVIAAVSGGSDSLGLLFLLRDYMAMLKDPP-RLIAATVD 59 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H LR ++DE V +CS I H +++W +KP +GL AAAR ARY L+S+ A+ A Sbjct: 60 HQLRAESRDEAENVGRLCSHYGIEHRILTWDEAKPTSGLAAAARTARYRLLSQAAQEAGA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRR 174 I+T HT DDQ+ET MR +R + GL+ M L + RP L R Sbjct: 120 AFIVTGHTQDDQIETFLMRRERSAHAEARGLAAMSSRSLLGGFGRVGSVELDRPLLSISR 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNN- 232 + +R L R I W +DPSN + +ER RVR V D A+ ++ + R + N Sbjct: 180 QVLREELRGRGIGWIDDPSNANTDYERPRVRLGVAAKADRQAVLDQIAEAGAARERDNAV 239 Query: 233 -AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290 A+ P L + + + + L + AAI GG+ LPG R+ Sbjct: 240 LIAALADPASLRIDANGALLVDPQLYAALPDNARRLFAGLLAAIAGGRRFLPGDSERSRI 299 Query: 291 MLFLK-SGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 L +++ +I+R A+ R RNLP L L P + VWDGR++F N Sbjct: 300 ERVLSGEDDNHRLTVFGALIERGADGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFSNE 359 Query: 348 SDSLIQIGPQSYRK------------------------ADVPSGIPPIIAQRALSSMPSK 383 ++ ++ A G + R P Sbjct: 360 GSIDFELAAPGRQELADFLKAQNIEIESRKREALLVSPALYRDGRLYALPFRREGDFPKD 419 Query: 384 EGGKPLLAPFSRFMTKFDLPVAYAFSISFGKV 415 + A F + D +A A G+V Sbjct: 420 IHVERHFAIFDHVLPGHDFDLAMAVEARIGRV 451 >gi|29654800|ref|NP_820492.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 493] gi|154706200|ref|YP_001423893.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111] gi|164686109|ref|ZP_01946931.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177'] gi|165919314|ref|ZP_02219400.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334] gi|212219227|ref|YP_002306014.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154] gi|61216625|sp|Q83BJ9|TILS_COXBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29542068|gb|AAO91006.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii RSA 493] gi|154355486|gb|ABS76948.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111] gi|164601674|gb|EAX32419.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177'] gi|165916974|gb|EDR35578.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334] gi|212013489|gb|ACJ20869.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154] Length = 449 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F+ +L ++ +A SGG DS L+ A+ + + + A+ ++H L A Sbjct: 15 EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + +C+RL+I S +P + A AR+ARYA+ + ++TA Sbjct: 72 NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET ++ R KG+ + + RP L R+D++ + + N Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKNN 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W ED +N + RF R +R V I ++ + + + + + L L Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 + + +L + +LR + G Q LP + +E++ +L Sbjct: 247 QLIQKDSELEILPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330 S + I R L+++ A+ L Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335 >gi|86146872|ref|ZP_01065191.1| Cell cycle protein MesJ [Vibrio sp. MED222] gi|85835324|gb|EAQ53463.1| Cell cycle protein MesJ [Vibrio sp. MED222] Length = 448 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 33/349 (9%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F +S + P ++VA SGG DS LL I+ A+ V H L + A Sbjct: 11 AFQQSDLKPRRLVVAFSGGVDSRVLLELAAKYAKSH---HIECCAVHVHHGLSKNADLWA 67 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C + ++ + + AR+ARY + +H +++T D Sbjct: 68 EQCQTWCDASSVPLAIERVSLDINSGESVEKLARDARYDSLQKHLSF--GDVLITGQHID 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQLET + +R KG LS M + + +I RP L R DI + ++W Sbjct: 126 DQLETFLLALKRGSGPKG--LSSMAKVMSFGE-AFIVRPLLSVTRLDIEASAHDMGLTWV 182 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHM 246 ED SN D RF+R +R V L + F++ ++ L+ + L H+ Sbjct: 183 EDESNQDLRFDRNFIRHQVTPT----LTERWPSFRESVCRSAQLCAEQESLLDELLESHL 238 Query: 247 RSII--------AISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFL 294 + + ++S D L+ S LL L+R+ + C +P + ++ + Sbjct: 239 QQALGGCNSKSQSLSIDSLSQHSDLLRARLIRMWLSHCNQ--PMPSQKQLKLIWDEVACA 296 Query: 295 KSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDG 340 ++ + + V I R N L++ T+ + + + IL E + DG Sbjct: 297 QADANPKLVLNDVEIRRFNNQLYLVQDTKDLSSWKSEILIDENLLLPDG 345 >gi|295098677|emb|CBK87767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 428 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 92/412 (22%), Positives = 151/412 (36%), Gaps = 41/412 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LV SGG DS LL L + DR ++ A+ + H L A D V + VCS Sbjct: 14 RQLLVGFSGGLDSTVLLHRLK-LWRDRE-PDVQLRAMHIHHGLSPHADDWVAHCEAVCSG 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V G+ A AR+ARYA S + ++TA DDQ ET + Sbjct: 72 WAIPLIVERVTLEDEGLGIEAQARKARYAAFSGALQQ--GEALVTAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GLS M + + + RP L R + ++ Q ++ W ED SN DD + Sbjct: 130 KRGSGP--AGLSAMPERADFAET-ELIRPLLGETRASLEAWAQQHHLCWIEDESNQDDSY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDIL 257 +R +R V L L + F + + A + + + + L Sbjct: 187 DRNFLRLRV----LPLLSERWAHFSEAAARSAMLCAEQESLLDELLSEELDTLTTADGAL 242 Query: 258 NIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310 NI + +R +A I +P + R+ + C+ + + Sbjct: 243 NIAPLKVMSPVRRAALIRRWLAYHRAVMPSRAMLNRIWEEVAQAREDAAPCIHLNGYDVR 302 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370 R LW ++V +L ++L W + L + + +P Sbjct: 303 RYKGQLWWVKSVPSLADVVLD------WPSPEKALTLPMNAGVVALSHSGNVRLPEPDEN 356 Query: 371 IIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA 407 + + RA + + GG+ L + P+ R T D +A A Sbjct: 357 VTIRFRASGMLHIVGRNGGRKLKKIWQEQNVPPWRRDTTPLLFYGDTLIAAA 408 >gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45] gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45] Length = 445 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 156/405 (38%), Gaps = 42/405 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P I +AVSGG DSM +L H+ ++ ++VDH LR A E V D C Sbjct: 21 FPLDIGLAVSGGGDSMAMLTLAHNWT---HRWGVRLWVVTVDHGLRPEAAAEATLVRDTC 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W + Q LM AAR R +LI ++ AHT DD ET M Sbjct: 78 AELGWPHTTLRW-HWDGQGNLMDAARRGRLSLIGRW--RGGLPAVLFAHTRDDVAETFLM 134 Query: 138 RSQRDYAEKGMGLS---------------------GMCDTILYDLNLWISRPFLRCRRED 176 R R G+ G + + RP L RE+ Sbjct: 135 RLARGSGVDGLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCLDMGREE 194 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVN 231 +R +L W +DPSN D ++R RVR+ + ++ L + R + Sbjct: 195 LRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAGRMSRAREALR 254 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + + +D +++ LL + P +E + Sbjct: 255 ARAVAGWHSCGREGVAGDLILDRDAFAALEADTRMRLLAAALQYVSSAEYRPRAAQLEAL 314 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350 + L +G G ++ + + I R + L E +WDGR++ + + S Sbjct: 315 LDRLDAGAGG--TLHGAELRCDRAEIRIFREYAAVAGLRRAVTEGGLWDGRWRVSHPTPS 372 Query: 351 LIQI---GPQSYRK-ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 ++I G +R+ A+ +G PP RAL P+ G L+A Sbjct: 373 GLEIRALGEDGWRQSAERRAGGPPHAVARAL---PAIWDGDRLVA 414 >gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis CT-43] Length = 430 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842] gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842] Length = 476 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|218710301|ref|YP_002417922.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32] gi|254764823|sp|B7VIQ1|TILS_VIBSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|218323320|emb|CAV19497.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32] Length = 456 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 41/354 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +S + P+ ++VA SGG DS LL I+ A+ V H L + A Sbjct: 14 QSALKPSRLIVAFSGGVDSRVLLELAAQYAQTHG---IECCAVHVHHGLSKNADLWAEQC 70 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L ++ +V + + AR+ARY +H + +++T DDQL Sbjct: 71 QTWCDALSVSLAVERVSLDINCGESVEKLARDARYQAFQQHIRQ--GDVLVTGQHIDDQL 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + +I RP L R DI + ++W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAKVMSFGE-AFIVRPLLSVTRLDIEASAHDMGLTWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHMRSI 249 SN D RF+R +R V L + F++ ++ L+ + L H++ Sbjct: 186 SNQDLRFDRNFIRHQVTPT----LTERWPSFRESVCRSAQLCAEQESLLDELLESHLQQA 241 Query: 250 I----------------AISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM- 291 + ++S D L+ S LL L+R+ + C +P + ++ + Sbjct: 242 LGGCNSKSNSKSNSKSQSLSIDSLSQHSDLLRARLIRMWLSHCNQ--PMPSQKQLKLIWD 299 Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDG 340 ++ + + V I R N L++ T+ + + + IL E + DG Sbjct: 300 EVACAQADANPKLVLNDVEIRRFNNQLYLVQDTKDLSSWKSEILIDENLLLPDG 353 >gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B] gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B] Length = 426 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 23/406 (5%) Query: 1 MFLSPIESVRFF---VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M L+P E R V P+ + +AVSGGSDS+ L+ ++ + + Sbjct: 1 MLLTPTEEALIAEIRARIGVLPSKLGIAVSGGSDSIALMHLFAALARKNGA---DLAIAT 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 VDH LR + E R V+ + L ++H +++W++ L A AR ARY L+ E A Sbjct: 58 VDHGLRTDSLIEARGVAQQAADLGLSHDILTWQHPAQSGNLQAEARAARYRLLGEWATAR 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + HT DDQ ET MR +R GLSGM D + I RP L RR D+ Sbjct: 118 EIEAVAVGHTADDQAETFLMRLRRASGV--AGLSGMASRHHRD-GIEILRPLLGIRRSDL 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNN 232 R++L R I+W +DPSN D +FERVRVR ++ + + AL + + Sbjct: 175 RAYLTAREINWVDDPSNLDMKFERVRVRDALKALKPLGLTVDALTAVADNMRMADDALEA 234 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A+ V + ++ +D L +L + A G P + + Sbjct: 235 AMRAAAATLGQVRLGMVVLDHTGFTTLDDELARRMLLSAIAYVNGAEYPPRRAPVLDALQ 294 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL----YPEETTVWDGRYQFQNLS 348 LK G+ + ++VI + +WI R + + + + WD + Sbjct: 295 ALKDGRGVTLQGCQIVIR--GSQIWIGREYAAVRQVGVSYLPSTSKHISWDAAWVISTPQ 352 Query: 349 DSLIQIGPQSYRK---ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 D Q+ ++ + A + + L S+PS L+A Sbjct: 353 DWTQQVEIRALGEDGLALIDDWRQYEAPRELLKSLPSVWQDANLIA 398 >gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551] gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551] Length = 458 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 137/339 (40%), Gaps = 23/339 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 L + ++V +SGG DS+ LL L S+ +S + A VDH R +K ++ YV Sbjct: 15 LSAGSTVVVGISGGPDSLALLHFLWSLKEQKS---LTIIAAHVDHMFRGKESKQDMEYVQ 71 Query: 75 DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C +L I V+ + + AARE RY + K A L+ H DD Sbjct: 72 NYCKQLNIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHGDD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET+ MR R G +GM Y + +I RPFL +E+I + ++ Sbjct: 132 QIETMLMRMVRGSTMNGY--AGMQPKRPYA-DGFIIRPFLAVTKEEINRYCKLHGLTPRI 188 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLT 243 DPSN D + R R R +V +KFQ ++ A L K + Sbjct: 189 DPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTGVMNKVMR 248 Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGK-RG 300 +++ I I +D L I L +++ +I ++ ++ F +S K G Sbjct: 249 KKLQNEILIDRDCFLRIRKPLQRRGIQLILNYLYKEIPPTLSSAHIDMLVGFCESEKPSG 308 Query: 301 CVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + G +I + L+ P + P V Sbjct: 309 TLDFPNGLRIIRSYNDCLFTFNEGNIEPYEFIVPIPGVV 347 >gi|251790727|ref|YP_003005448.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591] gi|247539348|gb|ACT07969.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591] Length = 442 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 133/329 (40%), Gaps = 17/329 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H LVA SGG DS LL + + R+ + A+ V H L A + Sbjct: 18 QLATGGHYLVAYSGGLDSTVLLHLMTRLRLPRA---LSLRAVYVHHGLSVNADAWAEHCR 74 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + VV + G+ AAAR ARY ++ +H +++TA DDQ ET Sbjct: 75 TQCLNWLVPFDVVPVQVDARDGGIEAAARAARYKVLHQHVCE--GEVLLTAQHQDDQSET 132 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G+ T+ + + RP L RE + + +SW ED SN Sbjct: 133 FLLALKRGSGPAGLASMAAAATL---NGMVLQRPLLSISREQLEIYARLHQLSWVEDDSN 189 Query: 195 TDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 D+R++R +RR V + + + +L + + L+ + L + A Sbjct: 190 ADERYDRNFLRRQVLPVLKQRWPHFPSTVARSAELCAEQEQLLDELLAESLAALRNADGA 249 Query: 252 ISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307 +S L + +T F LLR A G +P + R+ + + +G Sbjct: 250 LSVAALMPMSATRRFALLRRWLAEQG--ARMPSREQLVRLWQEVALSRDDANPRLQLGSW 307 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETT 336 I R ++L++ ++ + +L + T Sbjct: 308 QIRRFRHYLYLLPTMQPVTDYVLSWQPTV 336 >gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319] gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319] Length = 458 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 84/339 (24%), Positives = 137/339 (40%), Gaps = 23/339 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + ++V +SGG DS+ LL L S+ +S + A VDH R E ++ ++ YV Sbjct: 15 LSAGSTVVVGISGGPDSLALLHFLWSLKEQKS---LTIIAAHVDHMFRGEESQQDMEYVQ 71 Query: 75 DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C +L I V+ + + AARE RY + K A + H DD Sbjct: 72 NYCKQLNIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHGDD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET+ MR R G +GM Y + +I RPFL +E+I + ++ Sbjct: 132 QIETMLMRMVRGSTMNGY--AGMQPKRPYA-DGFIIRPFLAVTKEEINRYCKLHGLTPRI 188 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLT 243 DPSN D + R R R +V +KFQ ++ A L K + Sbjct: 189 DPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTDVMNKVMR 248 Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGK-RG 300 +++ I I +D L I L +++ +I ++ ++ F +S K G Sbjct: 249 KKLQNEILIDRDCFLRIRKPLQRRGIQLILNYLYKEIPPTLSSAHVDMLVGFCESEKPSG 308 Query: 301 CVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + G +I + L+ P + P V Sbjct: 309 TLDFPNGLRIIRSYNDCLFTFNEGNIEPYEFIVPIPGVV 347 >gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407] gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407] gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 480 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222] gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200] gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto str. T04001] gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto str. T04001] gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200] gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222] Length = 480 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307] gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307] Length = 430 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 97/404 (24%), Positives = 166/404 (41%), Gaps = 22/404 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I VAVSGG DSM LL + + A++VDH LR A DE V+ C Sbjct: 30 PKKIGVAVSGGGDSMALLHMCIWWA---NLVGVTVEAVTVDHGLRAEAADEAAVVAAFCK 86 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++HSV++W + + + AAAREARYAL++ AK+ +M HT DD ET MR Sbjct: 87 DQGVSHSVLNWDGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADDIAETFLMR 146 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ D + +RP R +R++L + ++ W EDPSN D Sbjct: 147 LARTSGVDGLAAM---DARFDRDGVKWARPLWEQPRAQLRNYLRRHDVGWVEDPSNEDLS 203 Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R + R+ + ID+ L R + A + +T +I + Sbjct: 204 QTRPKARKILNALAPLGIDVGTLKSTAAFLSSARSALQCWAADEARRVVTFEHGDVIIPT 263 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-MLFLKSGKRGCVSIGRVVIDRR 312 + + + + L + G+ P ++ + + LK + ++ + + Sbjct: 264 RSCPPVHTEIERRLQLAAIGYINGEGYPPRKMALNYLDVALLKQDRH---TVAGCFVTKV 320 Query: 313 ANFLWITRAVRNLPTLILYPEETT--VWDGRYQFQNLS--DSLIQIGPQSYRK--ADVPS 366 L +R + + I++ +WDGR+ D + ++ DVP Sbjct: 321 DGGLRYSRELNAVEGPIVWSNRNVAKIWDGRWSLSEDQNHDRAGDLTIRALGDTMKDVPD 380 Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFS 409 + + +L + P+ G+ L+ AP + F + F+ Sbjct: 381 WCESGLPRASLMASPAVFDGETLIAAPVAGLQNGFSARIVADFA 424 >gi|161830915|ref|YP_001597351.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331] gi|161762782|gb|ABX78424.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331] Length = 449 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + F+ +L ++ +A SGG DS L+ A+ + + + A+ ++H L A Sbjct: 15 EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + +C+RL+I S +P + A AR+ARYA+ + ++TA Sbjct: 72 NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET ++ R KG+ + + RP L R+D++ + + N Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKSN 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W ED +N + RF R +R V I ++ + + + + + L L Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 + + +L + +LR + G Q LP + +E++ +L Sbjct: 247 QLIQKDSELEILPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330 S + I R L+++ A+ L Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335 >gi|15602154|ref|NP_245226.1| hypothetical protein PM0289 [Pasteurella multocida subsp. multocida str. Pm70] gi|61216731|sp|Q9CNY2|TILS_PASMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12720522|gb|AAK02373.1| MesJ [Pasteurella multocida subsp. multocida str. Pm70] Length = 431 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 30/344 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M L+ ++ + L H L+ SGG DS LL+ + + + AI + Sbjct: 1 MLLTQFQAE---IAQLPPTQHQFLIGFSGGLDSTALLLLFAKLREKQ--PHLMLRAIHIH 55 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H L A V + +C ++ I V K + + G+ A AREARY I +H + Sbjct: 56 HGLSANADAWVTHCQQICQQVAIPLIVEQVKIDQHK-GIEAGAREARYQAIRQHL--LPN 112 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DQ ET ++ +R G+G T+ L I RP L R+ + Sbjct: 113 EMFATAHHQQDQTETFFLALKRGSGLAGLGAMQRKSTL---YCLPICRPLLTFTRQMLLD 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AM 236 ++ Q W ED SNTD R+ER +R V L L + F + + Sbjct: 170 YVKQAGCPWVEDESNTDSRYERNFLRHEV----LPRLRQRWPHFDNAVQRSAQHCFEQQQ 225 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERV 290 L+ + L ++ + LLR+ A CG +S+P + ++ Sbjct: 226 LLNELLHAEFAQHFDKTERTFQLRDFATRSQLKQNALLRLWLAQCG--LSMPSKVQLTQL 283 Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331 + + KS + +G + R + L++T +L +L L Sbjct: 284 IQDVILAKSDSQPQFQLGEYCVRRYQDTLYLTPHFADLSSLRLP 327 >gi|330001721|ref|ZP_08304094.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3] gi|328537568|gb|EGF63790.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3] Length = 349 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 24/319 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +LVA SGG DS LL L + + A+ V H L A D V + Sbjct: 10 AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSVHADDWVAH 67 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V ++ G+ A AR ARY + +++TA DDQ Sbjct: 68 CRQICQQWQVPLGVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +R GLS M + ++ + + RP L RE +R + L +SW ED Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSVFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN DD ++R +R V + L + F + + + A L+ + L + S+ Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238 Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +A + + LLR A G Q +P ER+ + C Sbjct: 239 VAEDGSLAIAPLATMSPPRRAALLRRWLA--GQQAPMPAREVPERLWHEVALAREDASPC 296 Query: 302 VSIGRVVIDRRANFLWITR 320 + +G + R L+ + Sbjct: 297 LRLGEFTVRRFQQRLYWVK 315 >gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891] gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891] Length = 435 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 150/378 (39%), Gaps = 25/378 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + I++ +SGG DS +L L ++ A+ V H L + A Sbjct: 13 QYYQPNTRIVLGLSGGLDSRVMLELLAQYAQQ---YRVDCLAVHVHHGLSDNADQWAEQC 69 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L + V + +AREARY + ++ + L++T DDQLE Sbjct: 70 QHWCQSLNVQLVVEKVSLDIEGRSIEESAREARYNALRKYLSS--GDLLLTGQHADDQLE 127 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R KG LS M + + + I RP L R++I F ++ W ED S Sbjct: 128 TFLLALKRGSGPKG--LSSMAAVMPFA-SAQIVRPLLSVTRQEIEEFAQSLDLEWVEDES 184 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D RFER +R + ++ +++ +L + + L+ + L+ + S Sbjct: 185 NQDQRFERNFIRHNLTPNMRERWPHIHQSVRRSAELCAEQEQLLDELMAEKLSAALHSDS 244 Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306 ++ + + LLR+ G + +P ++++ + +++ Sbjct: 245 SLEIATLAEMSELARTRLLRMWLGSLG--LRMPSRIQLDKLWQEVAQAQQDANPQLTLAD 302 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQFQNLSDSLIQIGPQSYRKAD 363 I R A+ L++ +A ++L + V D Q +S ++ ++ +A Sbjct: 303 GQIRRFAHKLYVVQAWQSLEQWQCSLQLEQVCELPDELGQLALVSSPNGKLSLKALAQAP 362 Query: 364 V-----PSGIPPIIAQRA 376 + P G+ A+R Sbjct: 363 LQVIFNPEGLSAHPAERG 380 >gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134] gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134] Length = 476 Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats. Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++R+V +C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|304393350|ref|ZP_07375278.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130] gi|303294357|gb|EFL88729.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130] Length = 344 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 152/336 (45%), Gaps = 12/336 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LVA+SGGSDS LL LH R K A +VDH LR A +E V VC +L Sbjct: 7 PVLVAISGGSDSSALLHRLH-----REIAKGNLFAATVDHGLRPEAAEEALQVEAVCQKL 61 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +AH+ + W K A+AR ARY L+ HA+++ A I HT DDQ ETV+MR+ Sbjct: 62 DVAHATLRWSGGKKTA---ASARAARYDLLVAHAQSLGAATIALGHTMDDQAETVFMRAM 118 Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R GL+GM + L + + RP L RR +R L ++W EDP+N D Sbjct: 119 RLRPTSNTRGLAGMTA-CTHHLGVTLWRPLLSTRRTALREDLSAAGLTWIEDPTNQDTST 177 Query: 200 ERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ERVRVR + +H L R + A + Y+ + I +I Sbjct: 178 ERVRVRNQLEAHSSTVHHLARFAAICAQSRSWLAQETATAMRNYVRWRNADNVWIISEIP 237 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 + +L +L V GGQ P + V ++ K S+GR V+ + + Sbjct: 238 RLQKLVLREVLSVLIMAAGGQPYRPALAKLYPVADAVERNKNLRYSVGRSVVQVLGDTIM 297 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 ++R P + +G Y+F++ +D I Sbjct: 298 VSREGLRRNEKPSKPTTESASNGLYRFRSSADDPIA 333 >gi|327392817|dbj|BAK10239.1| tRNA(Ile)-lysidine synthase TilS [Pantoea ananatis AJ13355] Length = 435 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 74/357 (20%), Positives = 132/357 (36%), Gaps = 30/357 (8%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F L ++VA SGG DS LL L + R + + A+ V H L A Sbjct: 4 FDALLKENDALVVAFSGGLDSTVLLHQLRAWQQAR--PRSRLRALHVHHGLSPNADSWAA 61 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +C R +I V+ + + G+ AAAR+ RY + + ++TA DDQ Sbjct: 62 HCLCLCERWQIPCEVLRVQVTDQGQGIEAAARQVRYQALGQALCA--DEKLLTAQHLDDQ 119 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + +R + RP L R + + + W ED Sbjct: 120 CETLLLALKRGSGPA---GLAAMPAAATFAGHALLRPLLNHSRLSLEQYAKAHQLVWVED 176 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRS 248 SN D R++R +R+ + L L + F + + + L+ + L + Sbjct: 177 ESNQDQRYDRNFLRQQL----LPTLLRRWPHFAEASARSAALCGEQEQLLDELLAEPLSE 232 Query: 249 IIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300 +I +L + LLR A G +P ++ R+ ++ + + Sbjct: 233 LIQPDGSLCFTPLLTMSEVKGNALLRRWLAAQG--EKMPSREALRRIRQEIMLCREDAQP 290 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 + +G I R L+ +LP + W+ Q +L +L + + Sbjct: 291 RLKLGNHEIRRYRQQLY------HLPLSASLADCEIAWNDVEQPLHLPQNLGVLTAE 341 >gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14] gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14] Length = 438 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 67/315 (21%), Positives = 120/315 (38%), Gaps = 13/315 (4%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 R + L ++A SGG DS LL + ++ + A+ V H L A Sbjct: 12 CRQLLAHLPASKRFVLAFSGGLDSRVLLDLMARFITQN--PEYSCHAVYVHHGLSSNADI 69 Query: 69 EVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 I+ V K + + L AAREARY ++++H +++TA Sbjct: 70 WADKCVVWAKSAGISCDVERVKVLTGNRISLEQAAREARYNILAQHVNM--GDMLLTAQH 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET + +R G+ M + + + + RP L R DI + L+ +S Sbjct: 128 SDDQIETFLLALKRGSGPAGLAAMPM--ILPFAKGMHL-RPLLNITRADIEQYGLEHKLS 184 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W ED SN D+R++R +R + L + + K + L+ + L + Sbjct: 185 WVEDESNQDERYDRNFIRHQITPR-LVERWPSIHKSVARSSALCGEQEALLAELLATQLA 243 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGCVS 303 I +L + + Q + +P +E++ + K + Sbjct: 244 QAIQADGSLLLASDVSQRVGMALIRQWLKKQSVLMPSLAQLEQIWFNVVQAKEDANPKLC 303 Query: 304 IGRVVIDRRANFLWI 318 V + R L++ Sbjct: 304 WANVEVRRYQKKLYL 318 >gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171] gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171] Length = 476 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V +C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264] gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264] Length = 476 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V +C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579] gi|61216614|sp|Q81J84|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579] Length = 476 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V +C L I + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + N+ DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis] Length = 486 Score = 239 bits (611), Expect = 6e-61, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 133/334 (39%), Gaps = 27/334 (8%) Query: 4 SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++SV+ F+ + A I+V VSGG DSM LL ALH++ + A VDH Sbjct: 13 DIVKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDH 68 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 R +++++R+V C ++ V+ + AAAR+ RY E Sbjct: 69 RFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMS 128 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E Sbjct: 129 KHQADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKE 185 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + +S+ D SN D + R R R+ V K+FQ + + Sbjct: 186 EILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQ 245 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMER 289 L + I + S + I+S+ L L R + + +P S Sbjct: 246 FLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHH 305 Query: 290 VMLFLKSGKRGC------VSIGRVVIDRRANFLW 317 + FL + G G V+ L+ Sbjct: 306 IQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLF 339 >gi|163733524|ref|ZP_02140967.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149] gi|161393312|gb|EDQ17638.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149] Length = 414 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 163/408 (39%), Gaps = 22/408 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VAVSGGSDSM LL+ L + +I S +VDH LR A E V+ C+ Sbjct: 17 PKALGVAVSGGSDSMALLVLLRDYAAR---NRIALSCATVDHGLRPEAAAEAEGVAAYCA 73 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + H + W + AAR ARY L+++ A+ T I HT DDQ ETV M Sbjct: 74 AHDVPHVTLKWTGWNGKGNTQNAARVARYRLLADWARGQGITDIALGHTQDDQAETVLMG 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ D L RP L R +R FL R ++WCEDPSN DD+ Sbjct: 134 LARASGVDGLSAMAARRD---DRGLCWHRPLLAMSRAQLRGFLRGRGVAWCEDPSNEDDQ 190 Query: 199 FERVRVRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 FER++ RR + + D +L R + + + + + Sbjct: 191 FERIKARRALATLADLGVDRASLAQVAGNMAQARSALEHQTMQAVRDLVCLRGGGAAMPW 250 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L + + LL + P +++ + ++ ++ + R Sbjct: 251 SGFLGLPQEIARRLLVAAIDWIAAPSHAPRQKALAAALAAAETSDSA--TVAGCRLIRVG 308 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI----QIGPQSYRKADVPSGIP 369 + WI R + + + + + +WD R+Q ++ + +G + P Sbjct: 309 DTFWIFREFQAVAH--IRSDASALWDDRWQIFGDQNAEVSEIRALGEDGLLQC--PEWRG 364 Query: 370 PIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISFGKVF 416 + + L + P+ G L+ AP ++ + + V F +VF Sbjct: 365 TDLPRTLLLATPAVWQGDVLIAAPVAQSTSAWRAEVIKRPGCLFDRVF 412 >gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187] gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187] Length = 476 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987] gi|61216566|sp|Q73FE5|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 476 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301] gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301] Length = 456 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 18/336 (5%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 F R L H+L+A+SGG DS LL L + F + A+ V H L A Sbjct: 28 HFLSRYLKPNQHVLLALSGGLDSTVLLHLLAAAKQTIRF---ELHAMHVHHGLSPNADAW 84 Query: 70 VRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARY-ALISEHAKTINATLIMTAHT 127 + C L + VV + + G+ AAAR+ RY AL I ++TAH Sbjct: 85 ADFCMQQCQLLNVPIKVVRVQLDLNAKQGIEAAARQLRYEALFDFKVSGIAPDFVVTAHH 144 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ ++ R KG+ G D + + RP L R+ ++ + Q NI Sbjct: 145 QDDQAETLLLQLFRGAGVKGLASMGCI-----DESRRLMRPLLDISRQTLQEYAEQNNIQ 199 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 WC D SN + ++ER VR V + ++ + + + N+ + L Sbjct: 200 WCNDESNDNTQYERNFVRHDVMPVLATRYPSVKSVLARTASHLAEANDLLDTLAKIDADK 259 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301 +++ QD+ D LLR Q+++P + ++ L K+ Sbjct: 260 LLQNNSLCLQDLTGFDLPRAKNLLRWWF--SQNQLAMPTSEHLNEIIQQLFNAKADANIN 317 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + + + + R ++ P + + E + Sbjct: 318 IQLQHLSLKRYQQRAYLCAERLAEPFDMTWNGEPYL 353 >gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2] gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2] gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 480 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++R+V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5] gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5] Length = 472 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 132/332 (39%), Gaps = 27/332 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + SV+ F+ + A I+V VSGG DSM LL ALH++ + A VDH Sbjct: 1 MNSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++R+V C ++ V+ + AAAR+ RY E Sbjct: 57 RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E+I Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLPITKEEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + +S+ D SN D + R R R+ V K+FQ + + L Sbjct: 174 LHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291 + I + S + I+S+ L L R + + +P S + Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293 Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317 FL + G G V+ L+ Sbjct: 294 QFLDWAENGSPSGVLDFPKGLKVVKSYQTCLF 325 >gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3] gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3] Length = 283 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVNYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185] gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W] gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876] gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876] gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W] gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185] Length = 480 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++R+V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676] gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676] Length = 480 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4] gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4] Length = 480 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15] gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24] gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550] gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550] gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24] gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15] gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 480 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 480 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 8 TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V +C L I + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|209695834|ref|YP_002263764.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238] gi|208009787|emb|CAQ80094.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238] Length = 443 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 152/399 (38%), Gaps = 27/399 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + ++VA SGG DS+ LL ++ A+ V+H L E A + + C Sbjct: 16 PKSELVVAFSGGVDSVVLLHLAAYYSK---LHQLPCVAVYVNHGLSEHAVEWEVFCQSYC 72 Query: 78 SRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I+ + + PQ L AREARY ++++H +L++T DDQ+ET + Sbjct: 73 DSLGISLFIERVNLDIGPQQSLEEVAREARYDVLAKHINNH--SLLLTGQHQDDQVETFF 130 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R G+ + + RP L R DI ++ + W ED SN D Sbjct: 131 LALKRGSGPAGLSSMPVIAPFVTGRK---CRPLLSTSRCDIEAYANVNQLKWVEDESNKD 187 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 RF+R +R V + + + + L + + L+ + + +I IS Sbjct: 188 TRFDRNFLRHKVTPLLRQRWPSFASAVNRSAQLCAEQEQLLTELLQPKVKAYQNTIQGIS 247 Query: 254 QDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309 + L ++S +LR+ I LP + + + C+ I + + Sbjct: 248 IESLALESEAACKVILRLWLKQFS--ILLPTQAQLGVLWNEVANAQQDANPCLEINSIQL 305 Query: 310 DRRANFLWITRAVRNLPTLILYPEE-TTVWDGRYQF---QNLSDSLIQIGPQSYRKADVP 365 R +L+ ++ +E T+ DG Q + + + P R Sbjct: 306 RRFQGYLYCLPQYGDVSQWNSELKEILTLPDGLGDIELKQTVGGNDSDLMPLFLRSPLSG 365 Query: 366 SGIPPIIAQRALSSMP-SKEGGKPLLAPFSRFMTKFDLP 403 + L + P +++ + + ++ +P Sbjct: 366 ERVTVRFDSTGLIAHPEARQHSRK----MKKLYQEYGIP 400 >gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W] gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99] gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108] gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820] gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102] gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus anthracis CI] gi|61216513|sp|Q6HPV4|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W] gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108] gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99] gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820] gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102] gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI] Length = 476 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FVR L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I ++ + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames] gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames Ancestor'] gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne] gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488] gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442] gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193] gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465] gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389] gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174] gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I] gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684] gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248] gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066] gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western North America USA6153] gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B] gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum] gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia 94] gi|61216616|sp|Q81VX7|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames] gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488] gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193] gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442] gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389] gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465] gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174] gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I] gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684] gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248] Length = 476 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FVR L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I ++ + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto BEST195] Length = 472 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 27/332 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV+ F+ + A I+V VSGG DSM LL ALH++ + A VDH Sbjct: 1 MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++R+V C ++ V+ + AAAR+ RY E Sbjct: 57 RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E+I Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKEEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + +S+ D SN D + R R R+ V K+FQ + + L Sbjct: 174 LHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291 + I + S + I+S+ L L R + + +P S + Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293 Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317 FL + G G V+ L+ Sbjct: 294 QFLDWAENGSPSGVLDFPKGLKVVKSYQTCLF 325 >gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM] gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM] Length = 396 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 93/381 (24%), Positives = 164/381 (43%), Gaps = 17/381 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VAVSGGSDS LL+ L R + A++VDH LR A E V+ +C+ L + Sbjct: 2 AVAVSGGSDSTALLLGLKDWAQGRE---VSLYAVTVDHGLRAAAAHEAEAVAQLCAELAL 58 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H + W+ Q L AAR ARY L+++ A + + ++ HT +DQ ET+ MR R Sbjct: 59 PHHCLEWQGWDGQGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQAETLVMRLARG 118 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ G + + RP L RE +R++L +R+I W +DPSN D ++ RV Sbjct: 119 AGLDGLAGMG---ARTARGAMTLHRPLLGVSRESLRAYLRRRDIGWADDPSNEDPQYARV 175 Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R R + +++ AL ++ R + + + + ++ +Q Sbjct: 176 RTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQEAAERLVQFDAGDLVIDAQAWG 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 + +L+ + G ++E ++ L+ + +++ R +++ Sbjct: 236 EERRDIQRRILQAALRWVSGHGYPARGAAVEALLEALQREE--AMTLHGCRNIPRRDYIR 293 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPIIAQRA 376 ITR + L P T+WDGR+Q + +I + P + Sbjct: 294 ITREWAAVADLEACPG--TLWDGRWQVSGPFEPEDRIRALGEASLSLCPDRRQAGYPAAS 351 Query: 377 LSSMPSKE-GGKPLLAPFSRF 396 L + P+ G+ + AP + Sbjct: 352 LIASPAVWRDGQLIAAPLAGL 372 >gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18] gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18] Length = 480 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ ++K VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVNYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29] gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29] Length = 480 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVNYCNEINLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1] gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1] Length = 279 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FVR L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I ++ + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26] gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26] Length = 480 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp. subtilis str. 168] gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp. subtilis str. SMY] gi|8039814|sp|P37563|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 472 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 27/332 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV+ F+ + A I+V VSGG DSM LL ALH++ + A VDH Sbjct: 1 MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++R+V C ++ V+ + AAAR+ RY E Sbjct: 57 RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E+I Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKEEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + +S+ D SN D + R R R+ V K+FQ + + L Sbjct: 174 LHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291 + I + S + I+S+ L L R + + +P S + Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293 Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317 FL + G G V+ L+ Sbjct: 294 QFLDWAENGGPSGVLDFPKGLKVVKSYQTCLF 325 >gi|152978797|ref|YP_001344426.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z] gi|226695533|sp|A6VNE4|TILS_ACTSZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|150840520|gb|ABR74491.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z] Length = 427 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 133/316 (42%), Gaps = 20/316 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++ + + L+A SGG+DS LL +R ++ AI + H L A D + Sbjct: 7 FQAQLQHSRYLIAFSGGADSTALLALFAKSRQNR--PHLQLRAIHIHHGLNVAANDWAAH 64 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C +L + + + +K ++G+ AREARYA I H ++ TAH DQ Sbjct: 65 CRRICEKLEVPLIIERVEINK-KSGIEQGAREARYAAIRCH--RHADEIVATAHHLQDQT 121 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG+G ++ LY + I RP L + ++ ++L +++ W ED Sbjct: 122 ETFLLALKRGSGIKGLGAM-QRESRLY--GMPIFRPLLPFGKTELENYLRAQSLDWIEDD 178 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D+R++R +R + + L + + LI + LT Sbjct: 179 SNADNRYDRNFLRNRILPV-LRRRWTDFDLAVSRSAQHCYEQERLIRELLTPAFEKNYRK 237 Query: 253 SQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303 + D LLR+ C ++ +P + +++ F K Sbjct: 238 TDRTFALSDFAGYSPNKQNALLRMWLTAC--RVPMPEKMQLAQLIRDVVFAKPDAVPQFV 295 Query: 304 IGRVVIDRRANFLWIT 319 +G VI R N L++T Sbjct: 296 LGEQVIRRYQNRLYLT 311 >gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28] gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28] Length = 283 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIVKYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98] Length = 476 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 26/300 (8%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M S +E V F + L + I+V VSGG DS+ LL L L R + Sbjct: 1 MKNSFVEKVDRFAKQHGVLEEHSTIVVGVSGGPDSLALLYYL---LEKREAKNLTIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112 VDH R + + +++++V ++C L I + + AARE RYA + Sbjct: 58 VDHMFRGDESYEDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + +A + H DDQ+ET+ MR R +G +G+ + N ++ RP L Sbjct: 118 IMRKYDAGYVALGHHGDDQVETILMRLVRGSTPQGY--AGIAVKRPFH-NGYLIRPLLAV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + Q I D SN + + R R+R++V + FQ + Sbjct: 175 TKEEILDYCDQLGIMPRIDSSNKKEVYTRNRLRKYVLPYLKEENPQVHEHFQKFSQLMQE 234 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A L + I S L + L S+P R +++L Sbjct: 235 DEAYLQELAFEKMNKVITKKSDKYLVLSIPAFESL------------SMPLQRRGIQLIL 282 >gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L] gi|61216463|sp|Q63HD6|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L] Length = 476 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|253687355|ref|YP_003016545.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753933|gb|ACT12009.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 425 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 127/327 (38%), Gaps = 25/327 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL+A SGG DS LL L +V R + A + H L A + C R Sbjct: 8 GSILLAYSGGLDSSVLLHLLVAV---RQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCER 64 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++ + + G+ AAAR ARY + H + ++TA DDQ ET + Sbjct: 65 WQVSFASLPVMVEAQNGGIEAAARTARYQALQAHQQE--GETLLTAQHLDDQSETFLLAL 122 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ T+ + RP L R + ++ + + W ED SN D+RF Sbjct: 123 KRGSGPAGLSAMAAQSTL---GQHRLIRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERF 179 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 +R +RR + L L + F + A + S+ + Q Sbjct: 180 DRNFLRRQI----LPRLTQRWPHFSSAVARSAELCAEQEQLLDELLEESLQRLCQPDGAL 235 Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308 ++ + F LLR A G ++P ++R+ + + + + ++ Sbjct: 236 SIDGLVPLSPVRRFALLRRWLAQQG--ATMPSREQLQRLWDEIAMSRQDAEPILQLHQLQ 293 Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335 I R L++ + +L IL + T Sbjct: 294 IRRFRQHLYLLPLMTSLQDCILPWQPT 320 >gi|330998820|ref|ZP_08322547.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT 11859] gi|329576034|gb|EGG57553.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT 11859] Length = 478 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 126/327 (38%), Gaps = 16/327 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +++VA SGG DS LL A+ + + + +A+ V H L + A + + + Sbjct: 46 KPINVIVAFSGGLDSSVLLYAVSQL---KGKSYGEITAVHVHHGLSKHANEWAEFCEERA 102 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + G A AR+ RY ++ E A+ A I+TAH DDQLET + Sbjct: 103 KKCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKAAADAILTAHHLDDQLETFLI 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R G+ +L I RP L +R ++ F R I W ED SN D Sbjct: 163 QWMRGSGPAGLAAM---PPLLRKDGCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDT 219 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ++ R +R + +L + K +++ A + L Sbjct: 220 KYLRNAIRHNIIP-ELEKIRPGFKTAAARSIELIAEAAETLRDVAEDDFNQASENDGKYL 278 Query: 258 NIDSTLL------FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIG-RVVI 309 ID L +LR+ G LP R +E + ++ K+ C+ + I Sbjct: 279 RIDDFLALPAGRRARVLRLWLDRV-GFKPLPRTRLLEMIRQIKETTKQSVCLMFSDGLEI 337 Query: 310 DRRANFLWITRAVRNLPTLILYPEETT 336 + + L +T + + E Sbjct: 338 RKYGSRLMVTEHEKPESEAEIIVEWHG 364 >gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 480 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam] gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42] gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1] gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam] gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1] gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42] gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 480 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Bacillus anthracis str. A2012] Length = 480 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|312883825|ref|ZP_07743544.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122] gi|309368574|gb|EFP96107.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122] Length = 436 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 144/380 (37%), Gaps = 26/380 (6%) Query: 13 VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + + P I++A+SGG DS +L L + I A+ V H L A D + Sbjct: 12 IEQYIQPQGQIVLALSGGLDSRVMLALLKKYCENTGSKAI---AVHVHHGLSIHADDWAK 68 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + V L +AR+ARY +S+H +++T DDQ Sbjct: 69 QCQKWCLESGLECFVEHVSLDLKGKSLEESARDARYVALSKHLNEN--DVLLTGQHADDQ 126 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + +R +G+ + N + RP L +R DI S+ N+ W D Sbjct: 127 LETFLLALRRGSGPRGLSCMPQVAPM---GNALLVRPLLHVKRHDIESYAKDSNLEWLND 183 Query: 192 PSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 SN D RFER +R + + +++ +L + + LI + +R Sbjct: 184 ESNQDKRFERNYIRHTIVPSLSKRWPHIQQSVQRSSELCAEQEALIEELISEKYRQCLRQ 243 Query: 249 IIAISQDILNIDST-LLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSI 304 ++S L S + ++R+ + I +P +E + + + + + Sbjct: 244 DKSLSISKLIGHSENVRRSIIRMW--LSNESIKMPTRSQLEIIWQQVAMAQQDANPKLQL 301 Query: 305 GRVVIDRRANFLWITRAVR---NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + I R L+I R + N I + + + D +S ++ QS Sbjct: 302 ANIEIRRFLEALYIVRDFQSLANWNKDIHFEQPCLLPDNLGTLVLISTGNGRLSKQSLNT 361 Query: 362 ADV-----PSGIPPIIAQRA 376 A + P G+ RA Sbjct: 362 APLKVIFEPEGLVAHPTDRA 381 >gi|269138115|ref|YP_003294815.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202] gi|267983775|gb|ACY83604.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202] gi|304558160|gb|ADM40824.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda FL6-60] Length = 439 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 153/384 (39%), Gaps = 30/384 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ ++ R L H+LVA SGG DS LL AL + + R ++ + V H L Sbjct: 1 MNTLDIQRHIADRLAGRQHLLVAFSGGLDSTVLLHALVQLRASR-LPHLRLRVVHVHHGL 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A V + VC ++ V+ + + + AAAR+ARY I+E + + Sbjct: 60 SHFADQWVDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYRGIAELIDSH--ETL 117 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TA DDQ ET + +R GLS M ++ + + RP L RE + ++ Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAQSMPFFACEQL-RPLLDISREQLTAYAQ 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++SW ED SNTD RF+R +R + + L + F + + + A Sbjct: 175 AHHLSWVEDDSNTDARFDRNFLRMRIVPL----LRERWPHFSEAVARSASLCAEQEQLLD 230 Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291 + M S+ A+ +L + + LLR A G + +P ++R+ Sbjct: 231 ELLMESLQALMSEDDALSIDGLLPLSEAKRYALLRRWIACFG--VMMPTREQLQRLWHEV 288 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + + + + + R + LP L +E WD R Q L D L Sbjct: 289 ALAREDAEPQLHLAKCQVRRFRRR------LYLLPPLRSLRDEVLRWDPR-QPLTLPDGL 341 Query: 352 IQIGPQSYRKADVPSGIPPIIAQR 375 ++ S + + R Sbjct: 342 GELQLGSRGVSVRAPAPDEAVTIR 365 >gi|54293769|ref|YP_126184.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens] gi|61216435|sp|Q5WYB4|TILS_LEGPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53753601|emb|CAH15059.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens] Length = 431 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 136/335 (40%), Gaps = 32/335 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L ++V SGG DS LL L S + + A+ ++H + + + R+ Sbjct: 11 VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLYN----QLLAVHINHGISGNSLNWQRH 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L IA + + AAR ARY S + + ++ H DDQ Sbjct: 67 CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ R G+ C + ++RPFL C R ++ + + W ED Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 180 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D ++ R +R V + L +K+ + ++ A + + + I Sbjct: 181 SNQDTKYSRNYLRHRVMPLLL-------EKWPGVAGNISRAATHCQQAKANLEVLA-IKD 232 Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 D+LN LL L+ + + ++ LP ++ +R+ ++F K Sbjct: 233 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFQRIIHEIIFAKLDAM 292 Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333 VS ++ + R L++ +A + NLP I + + Sbjct: 293 PTVSWNQIQVRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|227326554|ref|ZP_03830578.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 457 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 127/330 (38%), Gaps = 29/330 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A SGG DS LL L ++ R + + H L A + C R + Sbjct: 29 ILLAYSGGLDSSVLLHLLVAL---RQRSGLPIRTAYIHHGLNPLADSWAEHCCQQCERWQ 85 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + +S G+ AAAR ARY + H + ++TA DDQ ET + +R Sbjct: 86 VPFASLSVTVEAQNGGIEAAARTARYQALQAHLQE--GEALLTAQHLDDQSETFLLALKR 143 Query: 142 DYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 GLS M + L N + RP L R + ++ + + W ED SN D Sbjct: 144 GSGP--AGLSAMAASTLLGDNTTLGQHRLVRPLLGISRLQLEAYAQRHQLDWIEDDSNQD 201 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-- 254 +RF+R +RR + L L + F + A + S+ + Q Sbjct: 202 ERFDRNFLRRQI----LPRLTQRWPHFPSAVARSAQLCAEQEQLLDELLEESLQVLCQPD 257 Query: 255 ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIG 305 ++ + F LLR A G +P ++R+ + + + + Sbjct: 258 GALSVDGLIPLSPVRRFALLRRWLAQQGAM--MPAREQLQRLWDEVATSRQDAEPVLQLN 315 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEET 335 ++ + R L++ + +L I+ + Sbjct: 316 QMQVRRFRQHLYLLPLMPSLKDRIIPWQSP 345 >gi|156935294|ref|YP_001439210.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894] gi|156533548|gb|ABU78374.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894] Length = 434 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 140/350 (40%), Gaps = 23/350 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + +L +LVA SGG DS LL L + +++ AI V H + A Sbjct: 5 LLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRET--HPELRLRAIHVHHGISPNADRWAA 62 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + C R ++ + + ++ GL A AR+ARY A + ++TA +DQ Sbjct: 63 HCQAHCHRWQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLNDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + +R GL+ M + + ++ + RP L R + ++ + + W +D Sbjct: 121 CETLLLALKRGSGP--AGLAAMPAELPFADSV-LLRPLLNTPRAQLEAWASRHQLVWIDD 177 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN DDRF+R +R + L A + + ++ L+ + LT + +++ Sbjct: 178 ESNEDDRFDRNFLRLHILP-ALEARWPHFTQAAARSAQLCGEQEQLLDELLTPELAALM- 235 Query: 252 ISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVMLFL---KSGKRGCVSI 304 L I L+ +A + ++P +++R+ + + + Sbjct: 236 -DGKTLAIAPLETMSALKRAALLRRWLAALNAAMPSRATLQRLWDEVAQSREDAAPRLKC 294 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 G R LW RA + +L W ++ L +SL + Sbjct: 295 GDYEARRYQGRLWWVRARQGQRQTVLA------WPDPHKALLLPESLGCL 338 >gi|303256929|ref|ZP_07342943.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47] gi|302860420|gb|EFL83497.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47] Length = 478 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 16/327 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +++VA SGG DS LL A+ + + + +A+ V H L + A + + + Sbjct: 46 KPINVIVAFSGGLDSSVLLYAVSQL---KGKSYGEITAVHVHHGLSKHANEWAEFCEERA 102 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + G A AR+ RY ++ E A+ A I+TAH DDQLET + Sbjct: 103 KKCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKSAADAILTAHHLDDQLETFLI 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R G+ +L I RP L +R ++ F R I W ED SN D Sbjct: 163 QWMRGSGPAGLAAM---PPLLRKDGCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDM 219 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---- 253 ++ R +R + +L + K +++ A + + Sbjct: 220 KYLRNAIRHNIIP-ELEKIRPGFKTAAARSIELIAEAAETLRDVAEDDINQASENDGKYL 278 Query: 254 --QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIG-RVVI 309 D L + + +LR+ G LP R +E + ++ K+ C+ + I Sbjct: 279 RIDDFLALPAGRRARVLRLWLDRV-GFKPLPRTRLLEMIRQIKETTKQSVCLMFSDGLEI 337 Query: 310 DRRANFLWITRAVRNLPTLILYPEETT 336 + + L +T + + E Sbjct: 338 RKYGSRLMVTEHEKPESEAEIIVEWHG 364 >gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 476 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|325202116|gb|ADY97570.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240149] Length = 426 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 +D + R R R + + + + + +A+L + + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITR 320 A L++ R Sbjct: 296 YAGRLFVFR 304 >gi|315179362|gb|ADT86276.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii NCTC 11218] Length = 432 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 147/395 (37%), Gaps = 29/395 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H ++A SGG DS LL + +R I A+ V H L A + + C Sbjct: 17 RHFVLAFSGGVDSRVLLALIARYRQERE---ISVQAVHVHHGLSVNADEWAQRCQHWCQA 73 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ + + AR+ARYA ++ H + ++ DDQLET + Sbjct: 74 AHVPLAIERVSLATASGESIEKLARDARYAALATHM--HPGSTLLLGQHADDQLETFLLA 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG+ + RP L R I F +Q ++ W ED SN D+R Sbjct: 132 LKRGSGPKGLAAMAQQAPFS---CGQLLRPLLSVSRAQIEYFAMQHHLQWVEDESNQDER 188 Query: 199 FERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +ER +R V I ++ +++ L + + +A L+ L + ++S Sbjct: 189 YERNFLRHRVTPILSERWPSIRQAVQRSAQLCAEQDELLAELLRDALHAATQGDGSLSVA 248 Query: 256 ILNIDSTLLFY-LLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDR 311 +L S L LLR A G +++P ++ R + ++ + +G I R Sbjct: 249 MLTSHSDALRRQLLRYWLAAQG--LAMPSRIQLDVLWREVALAEADANPKLKLGECEIRR 306 Query: 312 RANFLW---ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 L+ + + V ++ + D Q + R P + Sbjct: 307 FQQCLYCVPLVQDVSAWQQPLVLGCALALPDHLGQLTLAKSEQG-----TLRCPSDPEHL 361 Query: 369 PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 LS+ P GG L + ++ +P Sbjct: 362 WVTFNPEGLSACPVGRGGTRKL---KKLFQEYQVP 393 >gi|77360937|ref|YP_340512.1| lysidine forming enzyme [Pseudoalteromonas haloplanktis TAC125] gi|76875848|emb|CAI87069.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas haloplanktis TAC125] Length = 467 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 17/327 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL +H++ ++ SAI + H L + A D + +C+ L + Sbjct: 59 VALSGGVDSVVLLHLMHALRVQ--DPALQVSAIYIHHGLSQYADDWQVFCQTLCNELNVP 116 Query: 84 HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + +T L A AR+ARY + E + + ++I+ +DQ+ET +R +R Sbjct: 117 FQTAKVNIEQQSRTSLEAQARDARYQALDEL--SPHGSIILLGQHLNDQIETFLLRLKRG 174 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG+G M RP L +R DI +F Q ++ D SNTD+RFER Sbjct: 175 SGLKGLG--AMQRERTLTSGRLCFRPLLAVKRSDIEAFAAQYALNHVTDDSNTDERFERN 232 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R+ V I L A + ++ + + L+ +Y + + + SQ LNI + Sbjct: 233 FMRQQVVPI-LAARFNGFEQCTARSISLLQQQHALLNEYTHIDLTQCVN-SQQALNISAI 290 Query: 263 LLFYLLRVSAAICGGQIS----LPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANF 315 F +R + + LP + +E+++ + K+ + + + I R Sbjct: 291 AKFTPIRTANVVRAWLELFTHVLPSQKQLEQIINQAIAAKTDAQMLIELSDGQIRRHQGH 350 Query: 316 LW-ITRAVRNLPTLILYPEETTVWDGR 341 L+ + + L +++ E + DGR Sbjct: 351 LYFVVPRTQILNNILITRSELKLADGR 377 >gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 480 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3] gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3] Length = 480 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I DPSN + + R R+R++V +KFQ ++V A Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENSQVHEKFQKFSMQVQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326] gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326] Length = 434 Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 149/400 (37%), Gaps = 29/400 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L + +++ SGG DS LL + + A+ V H L A + Sbjct: 14 HLNPHSRLVIGFSGGVDSQVLLTLAARFGQQ---YQCECLAVHVHHGLSGNADRWAEQCA 70 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + V + A AREARY +++H + + +++T DDQLET Sbjct: 71 QWAHERGVPFVVEKVILQPQGKSIEACAREARYQALAQHLE--HGDVLLTGQHADDQLET 128 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R KG+ C + N ++ RP L R I +F ++ + W ED SN Sbjct: 129 FLLAVKRGSGPKGLSAMAQCRSFA---NGYMLRPLLEVNRSTIEAFAVEHQLQWAEDESN 185 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 D RF+R +R V L+ + K ++ L+ + L+ + + A Sbjct: 186 QDTRFDRNYIRHQVAP-ALNQRWPHFKAAVQRSAQLCFEQEALLDELLSEKLSELTAADD 244 Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306 + ++ + L+R+ + ++ +P ++++ + +++ + Sbjct: 245 GLSIAGLTSLSELMRGRLIRMW--LSQHRVLMPSRDHLDKIWSQVAMAQQDANPILNLAQ 302 Query: 307 VVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 + R + L++ + V + D + + Q+ + A Sbjct: 303 GQVRRFNHRLYLVESLADVSAWSHQAALESSMILPDNLGTLLLRKSTQGHLSYQALQTAP 362 Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 + P + LS+ P++ G L + ++ +P Sbjct: 363 LSVIFEP----QGLSARPAERGHSRKL---KKLFQEYQVP 395 >gi|260596609|ref|YP_003209180.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032] gi|260215786|emb|CBA28217.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032] Length = 444 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 82/402 (20%), Positives = 153/402 (38%), Gaps = 25/402 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + +L +LVA SGG DS LL L + +++ AI V H + A Sbjct: 15 LLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRET--HPELRLRAIHVHHGISPNADRWAA 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +C R ++ + + ++ GL A AR+ARY A + ++TA DDQ Sbjct: 73 HCQAICHRWQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLDDQ 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + +R GL+ M + + + I RP L R + ++ + + W +D Sbjct: 131 CETLLLALKRGSGP--AGLAAMPAELPFAGSA-ILRPLLNTSRAQLEAWADRHQLLWIDD 187 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN DDRF+R +R + L A + + ++ L+ + L + +++ Sbjct: 188 ESNQDDRFDRNFLRLRILP-ALQARWPHFTQAAARSAQLCGEQEQLLDELLAPELAALMD 246 Query: 252 ----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSI 304 + + LLR A +P +++R+ + + + Sbjct: 247 GKTLAIAPLETMSEIKRAALLRRWLAAL--NAPMPARATLQRLWDEVAQSREDAAPRLKS 304 Query: 305 GRVVIDRRANFLWITRAVRNLPTLIL-YPEETTVWD-----GRYQFQNLSDSLIQIGPQS 358 G R LW RA + +L +P+ GR F D++ P Sbjct: 305 GDYEARRYQGRLWWIRARQGQRQTVLAWPDPHVALPLPEALGRLSFGEAGDAVRPPRPGE 364 Query: 359 YRKADVP-SGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 G+ I+ + ++ + + P+ R +T Sbjct: 365 SVSVRFSAPGMLYIVGRDRGRTLKKLW-QELQVPPWRRELTP 405 >gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271] gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271] Length = 480 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENSQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|308389283|gb|ADO31603.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis alpha710] Length = 436 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 113/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWICGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K GC ++ + Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGCWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201] gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201] Length = 480 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FVR L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L ++E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVKKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|213852724|ref|ZP_03382256.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 311 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 16/306 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R +R + L + + L+ + L + I ++ L + Sbjct: 187 DRNFLRLRALPL-LQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGTLRL 244 Query: 260 DSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312 + +R +A + +P ++ER+ + C+ G I R Sbjct: 245 SPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRY 304 Query: 313 ANFLWI 318 + LW Sbjct: 305 QSQLWW 310 >gi|328542547|ref|YP_004302656.1| ATPase of the PP-loop superfamily implicated in cell cycle control [polymorphum gilvum SL003B-26A1] gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Polymorphum gilvum SL003B-26A1] Length = 442 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 157/386 (40%), Gaps = 16/386 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGG+DS+ LL R+ + +VDH LR A+ E +V +C+ Sbjct: 29 DRLAIAVSGGADSLALLHLFADWQR-RTARAPQAHVFTVDHGLRAEARAEAEHVHRLCAG 87 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + H +++W K L A AREARY LI + ++ + + AH DDQ ET R Sbjct: 88 YCLPHEILTWAGRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDDQAETFLDRL 147 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ D + + I RP L + + + L +SW EDPSNTD R+ Sbjct: 148 TRGSGVYGLAAMA-ADEADGPVGVRILRPLLDVPKARLIATLEAAGLSWFEDPSNTDLRY 206 Query: 200 E-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + R+ + +D L + + ++ L+ + VH I+ Sbjct: 207 KRARLRRLGLLLAEEGLDQARLAATAARLRRAADALDGWAERLVRDHCRVHPAGPAEIAV 266 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L + L GG P ++E L +G+ ++G VV+ R Sbjct: 267 APLAEAPEEVRLRSLSRLIRATGGAEHGPRLEALEPATAALLAGEAASRTLGGVVLRRSG 326 Query: 314 NFLWITRAV-RNLP-TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV---PSGI 368 L + R R P L L P E +WDGRY + D + ++ +A V Sbjct: 327 PVLRLWRERGRTWPAPLDLAPGEDGIWDGRYLVRAPVDG-GSLAVRALAEAGVEIDRLTW 385 Query: 369 PPIIAQRALSSMPSK--EGGKPLLAP 392 P + A + P+ G+ L P Sbjct: 386 PTGWPRDAFACAPAIVDADGRLLFVP 411 >gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055] Length = 476 Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FVR L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V +C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I ++ + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293] gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293] gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 480 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1] gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1] Length = 460 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 142/377 (37%), Gaps = 36/377 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V F+ L ++V VSGG DS+ LL L S+R I+ A VDH L Sbjct: 2 LEVVHEFIEKHQLLERGTTVVVGVSGGPDSLALLHFL---WSERERYDIQLVAAHVDHML 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++ +V C + I V + G+ AAR+ RY + Sbjct: 59 RGKQSEEDMHFVKHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + AH DDQ+ETV MR R +G +G+ + +I RPFL R I Sbjct: 119 HARCVALAHHGDDQIETVLMRLVRGSTTRGY--AGIPVKRPFGSG-YIVRPFLCIDRRQI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + Q + DPSN D + R R R V + FQ ++ A L Sbjct: 176 EQYCQQNGLHARHDPSNEKDDYTRNRFRHAVLPFFKQENIRAHEHFQQFSEMISEDEAFL 235 Query: 238 IP------KYLTVHMRSIIAIS-QDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMER 289 K++ + I + + L +++ + G S + + Sbjct: 236 EQLTKEELKHVVDQQEGCVRIDIPSFIRMPKPLQRRGIQLILNYLYGNVPSSLSSIHINQ 295 Query: 290 VMLFLKSGK-RGCVSI--GRVVIDRRANFL--WITRAVRNLPTLILYPEETTVWDG---- 340 + FLK G + G VI + + + R R L P+ + +G Sbjct: 296 ALQFLKRQHPSGMLHFPNGLKVIRQYEVCIFTFQQRQTREYEFLFHVPDTLVLPNGCQLI 355 Query: 341 -----RYQFQNLSDSLI 352 RY F D ++ Sbjct: 356 SQFVDRYPFIEDDDHIV 372 >gi|332532221|ref|ZP_08408102.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis ANT/505] gi|332038319|gb|EGI74764.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 434 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 18/334 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ LL + ++ D I SAI V H L + A D + +VC L + Sbjct: 27 VALSGGVDSVVLLHLMRTLKVDN--PAINVSAIYVHHGLSQYADDWQHFCKNVCIELNVP 84 Query: 84 HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + +T L A AR+ARY + E + ++I+ +DQ+ET +R +R Sbjct: 85 FEAAKVVIEQQSRTSLEAQARDARYKALDEL--SPQGSIILLGQHLNDQVETFLLRLKRG 142 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG+G M RP L R DI +F Q +IS D SNTD+ F+R Sbjct: 143 SGLKGLGS--MYKERFLQSGRICFRPLLNVARSDIEAFATQFSISHITDDSNTDESFDRN 200 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-----DIL 257 +R + + L + ++ +++ L+ +Y + + I Q I Sbjct: 201 FLRSKIVPV-LAERFTGFEQCTARSIELLQQQQTLLDEYTQLDLNKCINEHQALCISQIN 259 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314 + + ++R + +P + +E+++ K+ + + + I R Sbjct: 260 EYSAARIANIVRAWLTLFTQV--MPSQKQLEQIINQAMCAKNDAQMRIDLLDGQIRRHQG 317 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348 +L+ L + L + + DGR +++ Sbjct: 318 YLYFVTPSEVLTDIELNHSQLKLADGRLLIKSIG 351 >gi|54296810|ref|YP_123179.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris] gi|61216438|sp|Q5X6W4|TILS_LEGPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53750595|emb|CAH12000.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris] Length = 431 Score = 236 bits (602), Expect = 6e-60, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 20/329 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L ++V SGG DS LL L S + + A+ ++H + + + R+ Sbjct: 11 VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L IA + + AAR ARY S + + ++ H DDQ Sbjct: 67 CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ R G+ C + ++RPFL C R ++ + + W ED Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 180 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRS 248 SN D ++ R +R V + L A A L I + + Sbjct: 181 SNQDTKYSRNYLRHRVMPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCPDLLNAT 240 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 + + I ++ + +L+ + +I LP ++ R+ ++F K VS Sbjct: 241 DHLLIEPIKGLEFERITNVLKFW--LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWN 298 Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPE 333 ++ + R L++ +A + NLP I + + Sbjct: 299 QIQVRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|148360562|ref|YP_001251769.1| cell cycle protein MesJ [Legionella pneumophila str. Corby] gi|148282335|gb|ABQ56423.1| cell cycle protein MesJ [Legionella pneumophila str. Corby] Length = 431 Score = 236 bits (602), Expect = 7e-60, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 32/335 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L ++V SGG DS LL L S + + A+ ++H + + + R+ Sbjct: 11 VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L IA + + AAR ARY S + + ++ H DDQ Sbjct: 67 CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ R G+ C + ++RPFL C R ++ + + W ED Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDE 180 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D ++ R +R V + L + A A L I Sbjct: 181 SNQDTKYSRNYLRHRVMPLLLEKWPGVVGNISRAATHCQQAKANLEVLA--------IKD 232 Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 D+LN LL L+ + + ++ LP ++ R+ ++F K Sbjct: 233 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAM 292 Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333 VS ++ + R L++ +A + NLP I + + Sbjct: 293 PTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 327 >gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803] gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803] Length = 480 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L + + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLEERSTIVVGVSGGPDSLALLYYL---LEKKEAKRWEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + N+ DPSN + + R R+R++V +KFQ V++ A Sbjct: 182 EIINYCNKLNVIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|296106371|ref|YP_003618071.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy] gi|295648272|gb|ADG24119.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy] Length = 433 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 32/335 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L ++V SGG DS LL L S + + A+ ++H + + + R+ Sbjct: 13 VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 68 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L IA + + AAR ARY S + + ++ H DDQ Sbjct: 69 CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ R G+ C + ++RPFL C R ++ + + W ED Sbjct: 126 ETVLLQLFRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D ++ R +R V + L + A A L I Sbjct: 183 SNQDTKYSRNYLRHRVMPLLLEKWPGVVGNISRAATHCQQAKANLEVLA--------IKD 234 Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 D+LN LL L+ + + ++ LP ++ R+ ++F K Sbjct: 235 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAM 294 Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333 VS ++ + R L++ +A + NLP I + + Sbjct: 295 PTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 329 >gi|52841023|ref|YP_094822.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|61216449|sp|Q5ZXE5|TILS_LEGPH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52628134|gb|AAU26875.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 433 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 20/329 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L ++V SGG DS LL L S + + A+ ++H + + + R+ Sbjct: 13 VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 68 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L IA + + AAR ARY S + + ++ H DDQ Sbjct: 69 CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV ++ R G+ C + ++RPFL C R ++ + + W ED Sbjct: 126 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRS 248 SN D ++ R +R V + L A A L I + + Sbjct: 183 SNQDTKYSRNYLRHRVMPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCPDLLNAT 242 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 + + I ++ + +L+ + +I LP ++ R+ ++F K VS Sbjct: 243 DHLLIEPIKGLEFERITNVLKFW--LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWN 300 Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPE 333 ++ + R L++ +A + NLP I + + Sbjct: 301 QIQVRRFQQHLYLLKADQINLPKAIKWQQ 329 >gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT] gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT] Length = 464 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 24/319 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 ++VA+SGG DS+ LL LH++ + I A V+HCLR A D + YV +C Sbjct: 19 DKVVVALSGGPDSICLLHILHTLKDE---INISIVAAHVNHCLRGEAADNDEMYVKKICE 75 Query: 79 RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I V V + + A RE RY E IN I AH +DQ ET Sbjct: 76 ELGIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNANDQAET 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V MR R G GL G+ N++ RP + R++I ++ ++ D +N Sbjct: 136 VLMRILR-----GTGLEGLVGIRPVRDNIF-VRPIINLTRDEIENYCDINKLNPRIDKTN 189 Query: 195 TDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 ++ + R ++R + + + +F D +NN +Y + Sbjct: 190 FENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKVDNEYINNVAKEKYNEYSEISE 249 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305 II + + +L ++R++ G ++ + ++ K + + Sbjct: 250 EKII-LKGQLFKEHEAILTRVIRIAIKNIKGNLNNLEKNHIYDIIDIQKKSTGKYIMLPS 308 Query: 306 RVVIDRRANFLWITRAVRN 324 + + +++ + + Sbjct: 309 GIRVTNNYGDIYVYKEEKK 327 >gi|238918797|ref|YP_002932311.1| tRNA(Ile)-lysidine synthetase [Edwardsiella ictaluri 93-146] gi|259533714|sp|C5B7T0|TILS_EDWI9 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|238868365|gb|ACR68076.1| tRNA(Ile) [Edwardsiella ictaluri 93-146] Length = 439 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 89/410 (21%), Positives = 165/410 (40%), Gaps = 30/410 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ ++ R L +LVA SGG DS LL AL + + ++ + V H L Sbjct: 1 MNTLDIQRHIADRLAGRRRLLVAFSGGLDSTVLLHALVQLRASC-LPHLRLRVVHVHHGL 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A V + VC ++ V+ + + + AAAR+ARY I+E + + Sbjct: 60 SHFADQWVDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYQAIAELIDSR--ETL 117 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TA DDQ ET + +R GLS M ++ + + + RP L RE + ++ Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAQSMPFFVCEQL-RPLLDISREQLTAYAQ 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++SW ED SN D RF+R +R + + L + F + + + A Sbjct: 175 VHDLSWVEDDSNADARFDRNFLRMRIVPL----LRERWPHFSEAVARSASLCAEQEQLLD 230 Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291 + M S+ A+ +L + + LLR A G + +P ++R+ Sbjct: 231 ELLMESLQALMSEDDALSIDGLLPLSEAKRYALLRRWIACFG--VMMPTREQLQRLWHEV 288 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET---TVWDGRYQFQNLS 348 + + + + + R L++ +R+L +L + T+ DG + Q S Sbjct: 289 ALAREDAEPQLHLAKCQVRRFRRRLYLLPTLRSLRDEVLRWDPHQPLTLPDGLGELQMGS 348 Query: 349 DSLIQIGPQSYRKADV---PSGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 + P + G+ I+ +R ++ + + P+ R Sbjct: 349 RGVCVRAPTPGEAVTIRFCAQGVLRIVGRRHSRAIKKIW-QELHIPPWER 397 >gi|260767808|ref|ZP_05876743.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972] gi|260617317|gb|EEX42501.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972] Length = 432 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 18/303 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++A SGG DS LL + +R I A+ V H L A + + C + Sbjct: 20 VLAFSGGVDSRVLLALIARYRQER---DISVQAVHVHHGLSVNADEWAQRCQHWCQAAHV 76 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ + + AREARYA ++ H + ++ DDQLET + +R Sbjct: 77 PLAIERVSLATASGESIEKLAREARYAALATHM--HPGSTLLLGQHADDQLETFLLALKR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG+ + RP L R I F LQ ++ W ED SN D+R+ER Sbjct: 135 GSGPKGLASMAQQAPFS---CGQLLRPLLSVSRAQIEHFALQHHLQWVEDESNQDERYER 191 Query: 202 VRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 +R V I ++ +++ L + + +A L+ L + ++S +L Sbjct: 192 NFLRHRVTPILSERWPSIRQAVQRSAQLCAEQDELLAELLRDALHAATQGDGSLSVAVLT 251 Query: 259 IDSTLLFY-LLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314 S +L LLR A G +++P ++ R + ++ + +G I R Sbjct: 252 SHSDVLRRQLLRYWLAAQG--LAMPSRVQLDVLWREVALAEADANPKLKLGECEIRRFQQ 309 Query: 315 FLW 317 L+ Sbjct: 310 RLY 312 >gi|50119989|ref|YP_049156.1| tRNA(Ile)-lysidine synthetase [Pectobacterium atrosepticum SCRI1043] gi|61216498|sp|Q6D8C5|TILS_ERWCT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49610515|emb|CAG73960.1| cell cycle protein [Pectobacterium atrosepticum SCRI1043] Length = 440 Score = 235 bits (601), Expect = 8e-60, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 130/340 (38%), Gaps = 25/340 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E ++ V IL+A SGG DS LL L +V R A + H L A Sbjct: 9 ELLQTIVTQTAGCGSILLAYSGGLDSSVLLHLLVTV---RQRSGQTIRAAYIHHGLNPLA 65 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C R ++ S ++ G+ AAAR ARY + H K ++TA Sbjct: 66 DSWAEHCRQQCERWQVPFSSLAVTVEAQNGGIEAAARTARYQALQVHLKE--GETLLTAQ 123 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ET + +R G+ + + + RP L R + ++ + + Sbjct: 124 HLDDQSETFLLALKRGSGPAGLSAMAANS---FLGHHRLVRPLLGFSRLQLEAYAQRHQL 180 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 W ED SN D+RF+R +RR + L L + F + A + Sbjct: 181 RWIEDDSNQDERFDRNFLRRQI----LPRLTQRWPHFPSAVARSAELCAEQEQLLDELLE 236 Query: 247 RSIIAISQ--------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-- 296 S+ + Q ++ + F LLR A G ++P ++R+ + + Sbjct: 237 ESLRTLRQPDGALSIDGLVPLSPVRRFALLRRWLAQQG--ATMPARDQLQRLWDEVAASR 294 Query: 297 -GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 + + ++ I R L++ + +L +L + T Sbjct: 295 RDAEPILQLNQMQIRRFRQHLYLLPLMPSLKDRVLPWQPT 334 >gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2] gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2] Length = 472 Score = 235 bits (600), Expect = 9e-60, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 21/320 (6%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ P + IL AVSGG DS+ L L + D+ KI V H +RE + DE + V Sbjct: 12 QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ I + + AARE RYA E + N TL+ TAH Sbjct: 72 QNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHLG 131 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV R R G+ +Y + RP L +EDI + + + Sbjct: 132 DQAETVLYRLLRGSGTAGLA-------GIYPQKGKLIRPLLTVTKEDILEYCRNEKLPYA 184 Query: 190 EDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 D SN + + R ++R + + AL + + + V ++ Sbjct: 185 LDHSNEEPIYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKRW 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + + + I + +L L+R +A + G+ ++ +E+VM + Sbjct: 245 AILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVMA-SQGQVGWS 303 Query: 302 VSIGRVVIDRRANFLWITRA 321 + + I +W RA Sbjct: 304 QDLPGLNIGIDYQGVWFQRA 323 >gi|325287915|ref|YP_004263705.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489] gi|324323369|gb|ADY30834.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489] Length = 434 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 97/412 (23%), Positives = 169/412 (41%), Gaps = 44/412 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + I++ F L P LVA SGG DS+ L ++ + FS + Sbjct: 5 FKNHIKA--HFPLLLQRP--FLVACSGGVDSVVLAHLCAALQ-------LDFSIAHCNFK 53 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR + + +V + +L+ V ++ +K + + AAR+ RY+ ++ K Sbjct: 54 LRDAASDADEEFVRQLALQLQKKIYVTNFNTVGYVAKNKVSIQMAARDLRYSWFAKLVKE 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 N ++T H DD LET + R G L G+ ++RP L R++ Sbjct: 114 NNLETVLTGHQADDNLETFLINLSRGTGVGG--LLGIPSKTSA-----LARPLLPFTRDE 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAV 234 I F Q NI W ED SN + ++ R R+R + +LH +L+ ++ + + Sbjct: 167 IEDFAKQNNIKWREDKSNKETKYLRNRIRHKIVPELKELHPTFLQNFNNTQAYLQETSVL 226 Query: 235 AM----LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 A L+ L V +I +S L L YL + ++ G+ + V Sbjct: 227 AEDYIKLLKNKLFVRKNGVIEVSVSKLLTYKPLKTYLYALFSSY--------GFTEWQDV 278 Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348 +L SGK+ R+V +R L + + L+ +ET + + FQN+S Sbjct: 279 ANLLTAMSGKQVLSRTHRLVKNRENLLLQELKEANSDVYLVNKDQETISYPIKLHFQNVS 338 Query: 349 DSLIQIGPQSYRKADVPS-GIPPIIAQRALSSM--PSKEGGKPLLAPFSRFM 397 + I I + D P ++ +R + P + GK L+ F + + Sbjct: 339 E--IGITNDTTIYVDKSKLKFPLVLRKREEGDVFYPFGQNGKKKLSKFYKDI 388 >gi|325204175|gb|ADY99628.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240355] Length = 426 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 +D + R R R + + + + + +A+L + + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRPEK 307 >gi|157147380|ref|YP_001454699.1| tRNA(Ile)-lysidine synthetase [Citrobacter koseri ATCC BAA-895] gi|157084585|gb|ABV14263.1| hypothetical protein CKO_03178 [Citrobacter koseri ATCC BAA-895] Length = 440 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 84/406 (20%), Positives = 142/406 (34%), Gaps = 37/406 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL+ ILVA SGG DS LL L + + AI + H L A V + Sbjct: 11 SLLPYRQILVAFSGGLDSTVLLHQLVQWREQQ--PDVTLRAIHIHHGLSSHADSWVTHCE 68 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 VC + ++ V + G+ A AR+ARYA ++ +++TA DDQ ET Sbjct: 69 AVCQQWQVPLVVRRVQLQDEGLGIEAQARQARYAAFAQAL--HPGEVLVTAQHLDDQCET 126 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R G+ G + + RP L R + + + + W ED SN Sbjct: 127 FLLALKRGSGPAGLSAMGERSSF---AGTQLIRPLLGETRAALEQWAKRYALRWIEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252 DD ++R +R V L L + F + + A + + Sbjct: 184 QDDVYDRNFLRLRV----LPLLQQRWPHFAEATARSAALCAEQERLLDELLAEDLAGCIT 239 Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305 + L + + R +A + +P +ER+ + C+ G Sbjct: 240 ADGALQLAPLMAMSGPRRAALLRRWLAAKHAPMPSRDGLERIWQEVALAREDAAPCLRFG 299 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R + LW ++V ++ W +L L + +P Sbjct: 300 EYDIRRYQSQLWWIKSVTGQSATVIP------WSSWQTPLSLPVGLGTVRLVPGDDLRMP 353 Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P+ + L + + GG+ L + P+ R T Sbjct: 354 RADEPVSIRFKASGLLHIIGRNGGRKLKKIWQELGVPPWRRDTTPL 399 >gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4] gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4] Length = 476 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ Sbjct: 1 MKDAFVEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57 Query: 58 VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + +++++V +C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + + DPSN + + R R+R++V +KFQ V++ Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342] gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342] Length = 480 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + VDH Sbjct: 8 TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V D+C L + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I DPSN + + R R+R++V +KFQ +++ A Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKKENPQVHEKFQKFSMQMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97] gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1] gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97] gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1] Length = 476 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RYA + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 466 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 17/326 (5%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I++VR + ++ L+AVS G DSM LL + + F V+H LR Sbjct: 3 IQTVRGQLTAIDPEKKRRFLLAVSTGVDSMVLLQIFCQLFPEMQKEPC-FGVAHVNHQLR 61 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + E ++ C I W+N P+TG+ A+AR RY ++ +++ Sbjct: 62 PASAKEAAFLRQYCQERGIPFYERCWENP-PETGVEASARNFRYTFFADVMSQEGYDVLL 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ+ET+ M+ R+ + G GM + + + RP L + I + Sbjct: 121 TAHHSDDQVETMLMKMMREGRLRSAG--GMKQQQPFHTGI-LLRPLLTVSKAAIYDYAQA 177 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236 + I + ED SN + + R R+R+ V + FQ L +V Sbjct: 178 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSEEVQFANQLIQQEQQQ 237 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295 + ++ ++ Q + S ++ P + + +++ L Sbjct: 238 WLSAFVQQQAACLVIDLQQLPTFSSAQRYFFYAGFLQQAEAFTKQPLNQKQLPQLLRLLD 297 Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319 K + +++ + + R + L + Sbjct: 298 EKKGQWQLALHKQWQLRRSYDQLLLE 323 >gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241] gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241] Length = 476 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + +E V FV+ L + I+V VSGG DS+ LL L L R+ + + Sbjct: 1 MKDTFVEKVDDFVKQYDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112 VDH R + + +++++V D+C L + + S+ Q AARE RY + Sbjct: 58 VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLER 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +E+I + + I DPSN + + R R+R++V +KFQ +++ Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234 Query: 233 AVAMLIP 239 A L Sbjct: 235 DEAYLQE 241 >gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925] gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925] Length = 467 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 24/307 (7%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + IE V ++ ++VAVSGG DS+ LL L+ + + I A ++H Sbjct: 5 NLIEKVIHTIKQNNMFEVKDKVVVAVSGGPDSICLLHILYKLKEELG---ITLVAAHINH 61 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 CLR E A + YV C L I V V + A RE RY SE Sbjct: 62 CLRGEEADKDEEYVRKFCENLNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLN 121 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + A I AH +DQ ET+ MR R G GL G+ N+++ RP + R+ Sbjct: 122 KVGANKIAVAHNANDQAETILMRMLR-----GTGLEGLVGIRAVRDNIFL-RPIIDITRD 175 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVN 231 +I ++ N++ D +N ++ + R ++R + + + +F D N Sbjct: 176 EIENYCDVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKIDN 235 Query: 232 NAVAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + + + + + +S I + ++ N +L ++R++ G + + Sbjct: 236 DYLNKISLEKYNKYCKSEKDKIIMRAEVFNEHEAILTRIIRIALKDLKGNLHNFDKSHVY 295 Query: 289 RVMLFLK 295 ++ K Sbjct: 296 DIIDIQK 302 >gi|153008553|ref|YP_001369768.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188] gi|166988061|sp|A6WY85|TILS_OCHA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|151560441|gb|ABS13939.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188] Length = 456 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 122/451 (27%), Positives = 192/451 (42%), Gaps = 38/451 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M LSP + F A ++ AVSGGSDS+GLL + ++ + A++VD Sbjct: 1 MGLSPSNISKLFEPFGFEQAKAVIAAVSGGSDSLGLLFLVRDYMAMLQNPP-RLIAVTVD 59 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H LR +K E V +C + I H ++ W +KP +GL AAAR ARY L+ + A+ + Sbjct: 60 HQLRAESKAEAENVGLLCRQYGIEHRILVWDEAKPTSGLAAAARTARYRLLVQAARDVGG 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRR 174 I+T HT DDQ+ET MR +R + GL+ M D + + ++ + RP L R Sbjct: 120 AFIVTGHTQDDQIETFLMRKERSAHAEARGLAAMSLRSLLDGLGLEGSVELDRPLLSVSR 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNA 233 + +R L R I+W +DPSN + +ER R+R + + D + ++ + R + N A Sbjct: 180 QTLRDELRGRGINWVDDPSNANTEYERPRIRHGIAAEADRQTVLDQIAEAGAARERDNAA 239 Query: 234 --VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290 A+ P L + + + L + AAI GG+ LPG R+ Sbjct: 240 LIAALGNPASLRADANGALLVDPQLYAALPGNARRLFSGLLAAIAGGRRFLPGDSERSRI 299 Query: 291 MLFLK-SGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 L +++ +I+R + R RNLP L L P + VWDGR++F N Sbjct: 300 ERVLSGDDDTHRLTVFGALIERGDSGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFLNE 359 Query: 348 SDSLIQIGPQSYRKADVPSGIPPI----IAQRALSSMPSKEGGKPL-------------- 389 ++ ++ I + AL P+ L Sbjct: 360 GMMDFELAAPGRQELADFLKSQNIEIESRKREALLVSPALYREGRLFALLFLQDGEFQQD 419 Query: 390 ------LAPFSRFMTKFDLPVAYAFSISFGK 414 A F + D +A A G+ Sbjct: 420 IHIERHFAIFDHVLPGHDFDLARAVEARIGR 450 >gi|229513885|ref|ZP_04403347.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21] gi|229349066|gb|EEO14023.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21] Length = 440 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 147/382 (38%), Gaps = 27/382 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY ++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SII----AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300 I +S +L S + L + A ++ +P + ER+ Sbjct: 238 KAITAEGGLSITVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVAQASEDANP 296 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-P 356 + + + + R + L++ R+L L PE+ + G Q S + I P Sbjct: 297 KLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLP 356 Query: 357 QSYRKADV---PSGIPPIIAQR 375 + + + P G+ R Sbjct: 357 DDFSQLWISFEPQGLEACPVGR 378 >gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048] gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603] gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196] gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621] gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621] gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196] gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603] gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048] Length = 480 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 14/242 (5%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTI 117 R + +++++V +C L + + S+ Q AARE RYA + K Sbjct: 67 RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + + DPSN + + R R+R++V +KFQ V++ A L Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYL 243 Query: 238 IP 239 Sbjct: 244 QE 245 >gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51] gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 472 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 21/320 (6%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ P + IL AVSGG DS+ L L + D+ KI V H +RE + DE + V Sbjct: 12 QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ I + + AARE RYA E + N TL+ TAH Sbjct: 72 QNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHLG 131 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV R R G+ +Y + RP L +EDI + + + Sbjct: 132 DQAETVLYRLLRGSGTAGLA-------GIYPQKGKLIRPLLTVTKEDILEYCRNEKLPYA 184 Query: 190 EDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 D SN + + R ++R + + AL + + + V ++ Sbjct: 185 LDHSNEEPVYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKRW 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + + + I + +L L+R +A + G+ ++ +E+VM + Sbjct: 245 AILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVMA-SQGQVGWS 303 Query: 302 VSIGRVVIDRRANFLWITRA 321 + + I +W RA Sbjct: 304 QDLPGLNIGIDYQGVWFQRA 323 >gi|325140361|gb|EGC62883.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis CU385] Length = 445 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314 Query: 312 RANFLWITR 320 A L++ R Sbjct: 315 YAGRLFVFR 323 >gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150] gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150] Length = 419 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 96/389 (24%), Positives = 152/389 (39%), Gaps = 21/389 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGGSDSM LL+ ++ + ++VDH LR A+ E V D CS L + Sbjct: 28 VAVSGGSDSMALLVLANAWAIENGHV---LYVVTVDHQLRPDARVEAETVGDFCSTLGLP 84 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H V++W + AR ARY L+ AK++ + HT DDQ ET+ M R Sbjct: 85 HQVLTWNGWVGRGNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQAETLLMSIARKS 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+ +L + RP L R D+R L + +ISW +DPSN D ER++ Sbjct: 145 GVDGLSAM---RARRAHGDLVLMRPLLGFARGDLRQILTEGDISWADDPSNDDITSERIK 201 Query: 204 VRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 +R + D ID AL Q + + K T I + Sbjct: 202 MRHLLTDMAASGIDRSALAQVALNLQSAQSALAVVAHDAAKKMATFVGGEIHVATSAFFA 261 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 + F +L S + P +++ +VM + G ++ ++ R I Sbjct: 262 LPDETRFRILAHSLTWLASAQNRPRQKALLQVMDAI--GLGKIATLHGCIVYPRNEHFVI 319 Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQSYRKADVPSGIPPIIAQR 375 R L PE DGR++ + +L +G A +++ Sbjct: 320 AREPSALDVCDTNPEMHF--DGRWRLEGPIKQGQTLSCLGESGL--AACRDWRESGMSRF 375 Query: 376 ALSSMPSKE-GGKPLLAPFSRFMTKFDLP 403 + P+ + + AP ++ L Sbjct: 376 GAMASPAIWENAQLIAAPMVLHCPEWQLI 404 >gi|147674336|ref|YP_001217758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|153817074|ref|ZP_01969741.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457] gi|227082366|ref|YP_002810917.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2] gi|229507683|ref|ZP_04397188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286] gi|262167735|ref|ZP_06035437.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27] gi|298500383|ref|ZP_07010188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757] gi|172047611|sp|A5F623|TILS_VIBC3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|254789054|sp|C3LPP6|TILS_VIBCM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|126512342|gb|EAZ74936.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457] gi|146316219|gb|ABQ20758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|227010254|gb|ACP06466.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2] gi|227014138|gb|ACP10348.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395] gi|229355188|gb|EEO20109.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286] gi|262023800|gb|EEY42499.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27] gi|297541076|gb|EFH77130.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757] Length = 440 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ ++L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPEKDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|325144442|gb|EGC66742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240013] Length = 445 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314 Query: 312 RANFLWITR 320 A L++ R Sbjct: 315 YAGRLFVFR 323 >gi|254671868|emb|CBA04090.1| cell cycle protein [Neisseria meningitidis alpha275] Length = 436 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWLCEEGSF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|153872260|ref|ZP_02001203.1| cell cycle protein MesJ [Beggiatoa sp. PS] gi|152071275|gb|EDN68798.1| cell cycle protein MesJ [Beggiatoa sp. PS] Length = 435 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 136/338 (40%), Gaps = 20/338 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + + +R + + VA SGG DS LL AL + + ++ + AI + H Sbjct: 13 MVNTLLSHLRKILHAYPATQCFWVAYSGGLDSRVLLHALAQLRHNNTY--FQLRAIHIHH 70 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119 L A + VC L IA V+ K P+ L A AR ARY I++ Sbjct: 71 GLHPKADQWATHCQQVCEALTIACEVIRVKVGTGPRESLEANARTARYDAIAQVIAP--D 128 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ TA DDQ ETV ++ R G+ + W+ RP L R + Sbjct: 129 DVVFTAQHADDQAETVLLQLLRGAGVAGLAAMPQVSRLA---QGWLVRPLLGYTRTQLHD 185 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAM 236 + L+ +I W ED SN+D RF R +R + + ++ + + + + N V Sbjct: 186 YALKAHIHWIEDSSNSDTRFARNFLRHEIMPLLQQRWPSVSHVLSRVAHHQAQANELVQT 245 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM-- 291 L + LT+ + D+L + L +LR G + LP + ++ Sbjct: 246 LAQQDLTI-CQGPTQEQLDLLALSHLSLVRQRNVLRFWLKQQG--LPLPSTVQLAHILND 302 Query: 292 -LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 L K+ ++ V + R + L+ + ++P Sbjct: 303 MLTAKADRQPVVHWPGAEVRRYRHHLFAMPNLPSVPKP 340 >gi|316985031|gb|EFV63984.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis H44/76] Length = 436 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|319410441|emb|CBY90801.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase; tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria meningitidis WUE 2594] Length = 436 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 472 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 27/332 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV+ F + A I+V VSGG DSM LL ALH++ + A VDH Sbjct: 1 MKSVKDFFNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NIIAAHVDHRF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++R+V C ++A V+ + AAAR+ RY + Sbjct: 57 RGAESEEDMRFVQAYCKAEQLACETAQINVTAYAREKGLNKQAAARDCRYQFFEDIMLKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ M+ + G GL+GM + I RPFL +E+I Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGAL--GAGLAGMQPARRFGTG-RIIRPFLTITKEEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + ++S+ D SN D + R R R+ V K+FQ + + L Sbjct: 174 LHYCRENSLSYRTDESNATDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291 + I + S + I+S+ L L R + + +P S + Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293 Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317 FL ++G G V+ L+ Sbjct: 294 QFLDWAEKGGPSGVLDFPKGLKVVKSYQTCLF 325 >gi|15642240|ref|NP_231873.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153820829|ref|ZP_01973496.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229512122|ref|ZP_04401601.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229519257|ref|ZP_04408700.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9] gi|229607187|ref|YP_002877835.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236] gi|254849373|ref|ZP_05238723.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10] gi|255747060|ref|ZP_05421005.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101] gi|262161395|ref|ZP_06030505.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1] gi|61217424|sp|Q9KPX0|TILS_VIBCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9656802|gb|AAF95386.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126521621|gb|EAZ78844.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229343946|gb|EEO08921.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9] gi|229352087|gb|EEO17028.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33] gi|229369842|gb|ACQ60265.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236] gi|254845078|gb|EET23492.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10] gi|255735462|gb|EET90862.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101] gi|262028706|gb|EEY47360.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1] Length = 440 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +Y C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQYCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ ++L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPEKDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|254804970|ref|YP_003083191.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14] gi|254668512|emb|CBA05883.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14] Length = 436 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L SF A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGSFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 TD + R R R + + + + + +A+L I + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIDRVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|77358707|ref|YP_338292.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|77358709|ref|YP_338291.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|218768194|ref|YP_002342706.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491] gi|61216742|sp|Q9JUE9|TILS_NEIMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|73919876|sp|Q4W568|TILS_NEIMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|66731914|gb|AAY52148.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|66731931|gb|AAY52164.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58] gi|121052202|emb|CAM08525.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491] gi|325134335|gb|EGC56981.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M13399] gi|325200183|gb|ADY95638.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis H44/76] gi|325206037|gb|ADZ01490.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M04-240196] Length = 426 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITR 320 A L++ R Sbjct: 296 YAGRLFVFR 304 >gi|261392546|emb|CAX50101.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase; tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria meningitidis 8013] Length = 426 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F +A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---NALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRQEK 307 >gi|325128268|gb|EGC51153.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis N1568] Length = 426 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITR 320 A L++ R Sbjct: 296 YAGRLFVFR 304 >gi|325136324|gb|EGC58932.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M0579] Length = 436 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITR 320 A L++ R Sbjct: 306 YAGRLFVFR 314 >gi|325208130|gb|ADZ03582.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis NZ-05/33] Length = 426 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITR 320 A L++ R Sbjct: 296 YAGRLFVFR 304 >gi|121726536|ref|ZP_01679785.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52] gi|121630989|gb|EAX63368.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52] Length = 440 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 145/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQMETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRCALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + + V P G+ R Sbjct: 356 PDDFGQLWVSFDPQGLEACPVGR 378 >gi|325132247|gb|EGC54941.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M6190] Length = 436 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 306 YAGRLFVFRQEK 317 >gi|153825370|ref|ZP_01978037.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2] gi|149741054|gb|EDM55123.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2] Length = 440 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY ++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEFVQLDVASGESIEKLAREARYRALASHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|71281989|ref|YP_268314.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H] gi|71147729|gb|AAZ28202.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H] Length = 462 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 131/311 (42%), Gaps = 15/311 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA SGG DS LL AL + ++ + + V+H L A+ + C +L Sbjct: 24 LIVAYSGGIDSQVLLHALVQLKQNKIINN-EITVCHVNHGLSGNAERWQKLAEQECIKLS 82 Query: 82 IAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V SK Q L A AR+ARY + + ++++T H DDQ ET + + Sbjct: 83 VNLIVKRVNVRSKAQQSLEALARDARYNALKSLREKK--SVVLTGHHSDDQSETFLLALK 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG LS M D +L + RP L R++I ++ +SW ED SN D F+ Sbjct: 141 RGAGLKG--LSAMSVQTQLDQHL-LVRPLLNVARQEIENYAENHQLSWVEDESNLDTCFD 197 Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R+ + + ++ + + + + L + LTV + L Sbjct: 198 RNFIRQKIIPLLRERWPSINNTINRSASHCLAGQELLDELAEQDLTVCKTGDSGLHVSAL 257 Query: 258 -NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314 + L+R A G +P + +V L L++ K + + V R N Sbjct: 258 TTLSPARFNNLIRFFMAQQG--CLMPSTEQVNQVRLQLQADEDKSPQIKVAEQVFRRFKN 315 Query: 315 FLWITRAVRNL 325 L++T ++ Sbjct: 316 TLFLTPEYSDI 326 >gi|121634879|ref|YP_975124.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18] gi|120866585|emb|CAM10336.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18] Length = 445 Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 315 YAGRLFVFRQEK 326 >gi|89075403|ref|ZP_01161820.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34] gi|89048819|gb|EAR54389.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34] Length = 438 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 119/315 (37%), Gaps = 13/315 (4%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 R + ++A SGG DS LL + ++ + A+ V H L A Sbjct: 12 CRQLLTHRPASKRFVLAFSGGLDSRVLLDLMARFITQN--PEYSCHAVYVHHGLSTNADI 69 Query: 69 EVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 I + K + + L AAREARY ++++H +++TA Sbjct: 70 WADKCVFWAKSAGICCDIERVKVLTGNRISLEQAAREARYNILAQHVNK--GDMLLTAQH 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET + +R GL+ M + + + + RP L +R DI + L +S Sbjct: 128 SDDQIETFLLALKRGSGP--AGLAAMPTILPFAKGMHL-RPLLNIKRSDIEQYGLDHKLS 184 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W ED SN D+R++R +R + L + + K + L+ + L + Sbjct: 185 WVEDESNQDERYDRNFIRHQITPR-LVERWPSIHKSVARSSALCGEQEALLAELLATQLA 243 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGCVS 303 I +L + + Q + +P +E++ + K + Sbjct: 244 QAIQPDGSLLLASDVSQRVGMALIRQWLKKQSVLMPSLAQLEQIWFNVVQAKEDANPKLC 303 Query: 304 IGRVVIDRRANFLWI 318 V + R L++ Sbjct: 304 WANVEVRRYQKKLYL 318 >gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44] gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44] Length = 480 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V F + L + I+V VSGG DS+ LL L L R K+K VDH Sbjct: 8 TFVEKVDEFAKRHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKRKEAKLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V ++C + + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVENLCREIGVICETIRINVSQYQQQYGMNAQMAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A+ + H DDQ+ET+ MR R KG +G+ + ++ RP L ++ Sbjct: 125 KYEASYVALGHHGDDQVETILMRLVRGSTSKGY--AGIAAKRPFHSG-YLIRPLLAVTKK 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + I+ DPSN + + R R+R+ V ++FQ V + A Sbjct: 182 EINAYCKRIGITPRIDPSNEKEVYTRNRLRKHVLPYLKEENPHVHEQFQKFSVLMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229528754|ref|ZP_04418144.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)] gi|229332528|gb|EEN98014.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)] Length = 440 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 129/324 (39%), Gaps = 18/324 (5%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 W D SN D R+ER +R V + ++ +++ +L + + + + L Sbjct: 179 WVIDESNADIRYERNFLRHQVTPVLTERWPSISQAVQRSAELCAEQEALLQEFLAEALKK 238 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 + + +S +L S + L + A ++ +P + ER+ Sbjct: 239 AITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLQMPSRQHTERIWCEVALASEDANPK 297 Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325 + + + + R + L++ R+L Sbjct: 298 LKLNHIEVRRFQHCLYLVPPERDL 321 >gi|183179458|ref|ZP_02957669.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3] gi|183012869|gb|EDT88169.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3] Length = 440 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 145/380 (38%), Gaps = 25/380 (6%) Query: 12 FVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 8 FVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQW 64 Query: 70 VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ C + +A + + + + AREARY ++ H TL++ Sbjct: 65 AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPHVNAQ--TLLLLGQHA 122 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET + +R KG+ + RP L R+ I ++ Q ++W Sbjct: 123 DDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLTW 179 Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 D SN D R+ER +R V + ++ +++ +L + + + + L Sbjct: 180 VIDESNADIRYERNFLRHQVTPVLTERWPSISQAVQRSAELCAEQEALLQEFLAEALKKA 239 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302 + + +S +L S + L + A ++ +P + ER+ + Sbjct: 240 ITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPKL 298 Query: 303 SIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-PQS 358 + + + R + L++ R+L L PE+ + G Q S + I P Sbjct: 299 KLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLPDD 358 Query: 359 YRKADV---PSGIPPIIAQR 375 + V P G+ R Sbjct: 359 PSQLWVSFEPQGLEACPVGR 378 >gi|327484760|gb|AEA79167.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae LMA3894-4] Length = 440 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 145/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAGALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + ++ + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNKIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|325138171|gb|EGC60742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ES14902] Length = 426 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRQEK 307 >gi|222528655|ref|YP_002572537.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222455502|gb|ACM59764.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 456 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 28/339 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL +L + + + ++ Sbjct: 1 MEFLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDC---ILRLKDKYNLDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A D+ ++V ++C R I +K A R ARY+ E A+ Sbjct: 58 HMLRPEADDDEKFVIEICKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAE 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +N I+ H +D +ET ++ R +G+ + + ++RP + RE Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIVARPLINISRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227 +I + N+ + D +N +++R VR + + L+ ++ ++ ++ Sbjct: 171 EIEEYAKLNNVPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTIEIIREES 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ +Y+ + + N+ + L ++++ IS + + Sbjct: 231 DQIEALAQKYFQEYVQKEDAYYVFNIEKAKNLPAFLRRRIIKMILEYFNAPISYDILKEI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 E + L SGK+ + +V++R+ + L R P Sbjct: 291 EEL-ASLSSGKKKVYN--ELVVERQNDELVFYRKSEESP 326 >gi|313668289|ref|YP_004048573.1| hypothetical protein NLA_9780 [Neisseria lactamica ST-640] gi|313005751|emb|CBN87205.1| hypothetical protein NLA_9780 [Neisseria lactamica 020-06] Length = 445 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 111/307 (36%), Gaps = 14/307 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNEKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQ 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVRLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + + +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHH 314 Query: 312 RANFLWI 318 A L++ Sbjct: 315 YAGRLFV 321 >gi|325130238|gb|EGC53008.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis OX99.30304] Length = 426 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 +D + R R R + + + + + +A+L + + Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRPEK 307 >gi|229524245|ref|ZP_04413650.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426] gi|229337826|gb|EEO02843.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426] Length = 440 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 27/363 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVWD---GRYQFQNLSDSLIQI 354 + + + + R + L++ R+L L PE+ + G Q + + I++ Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLLLPQGLGHLQLTSKAGGNIKL 355 Query: 355 GPQ 357 Sbjct: 356 PDD 358 >gi|325198322|gb|ADY93778.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis G2136] Length = 426 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRQEK 307 >gi|325142381|gb|EGC64790.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis 961-5945] Length = 426 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 296 YAGRLFVFRQEK 307 >gi|254286449|ref|ZP_04961406.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226] gi|150423398|gb|EDN15342.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226] Length = 440 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDELGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTDRWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A + +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAHHS--LPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R N L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQNCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16] gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16] Length = 434 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 148/380 (38%), Gaps = 33/380 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + I++A SGG DS LL L + + A+ V H L A + + Sbjct: 15 LAPRSRIVLAFSGGIDSRVLLSLLARYQQETHRPTL---AVHVHHGLSVNADEWANQCQE 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 ++ + + + + AR+ RY ++++H +++T DDQLET Sbjct: 72 WAAQSDVPFILEKVQLDASGKSIEECARDQRYKVLAQHVNEK--DILLTGQHGDDQLETF 129 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R KG LS M ++ + N + RP L+ RRE+I + ++W ED SN Sbjct: 130 LLALKRGSGPKG--LSAMAESKPF-SNGRLVRPLLKVRREEIEQYAQHHGLNWVEDESNQ 186 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--- 252 D RF+R +RR + + + F + A + + + Sbjct: 187 DTRFDRNYIRRHISPVIEE----RWPHFTQSVQRSAQLCAEQELLLDELLQDKLRLLVNS 242 Query: 253 -----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304 Q + ++ + + L+R+ A G + +P ++++ K+ +++ Sbjct: 243 DGSLAIQGMADLSALMRARLIRMWLANAGQR--MPSRDHLDKIWHQVALAKADANPVLNL 300 Query: 305 GRVVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + R L++ A + + + EE + D + S + + ++ Sbjct: 301 ISAQVRRFNRRLYLVSAHEDISDWSQRLGLGEELELPDRLGHLTLQATSTGSLSLSALQQ 360 Query: 362 ADV-----PSGIPPIIAQRA 376 A + P G+ A+R Sbjct: 361 APLRIIFNPEGLSAHPAERG 380 >gi|119471144|ref|ZP_01613676.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Alteromonadales bacterium TW-7] gi|119445800|gb|EAW27082.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Alteromonadales bacterium TW-7] Length = 434 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 28/347 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F + + + VA+SGG DS+ LL +H + + K+K SAI V+H L E A Sbjct: 13 ALEHFFKQQQF--NFTVALSGGVDSVVLLHVMHVLKQEM--PKLKVSAIYVNHGLSEYAN 68 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D + ++C L I + S + +T L A AREARY + E + ++I+ Sbjct: 69 DWQAFCQNLCVELDIPFNTAQVTISPQTRTSLEAQAREARYKALDELSAPQ--SVILLGQ 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQ+ET +R +R KG+G M RP L R DI F NI Sbjct: 127 HLNDQIETFLLRLKRGSGLKGLG--AMQAMRELQSGRICYRPLLSITRSDIEHFATAFNI 184 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 + D SNTD+RF+R +R V + K+F+ ++ +L + + Sbjct: 185 AHITDDSNTDERFDRNFLRARV-------VPELAKRFKGFEQCAGRSIELLQQQQALLDE 237 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS---------LPGYRSMERVM---LFL 294 + I +SQ + + + + ++ S + +P + + +++ + Sbjct: 238 YTQIDLSQSLNDQQALCISQIIHYSDVRITNVVRAWLSLFTQVMPSQKQLSQIINQAINA 297 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341 ++ + + + + R +L+ + L E T+ DGR Sbjct: 298 QADAKIQIDLVDGQVRRHQGYLYFVTQKNIVNDDELITHELTLNDGR 344 >gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis ITI-1157] gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis ITI-1157] Length = 417 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 99/383 (25%), Positives = 159/383 (41%), Gaps = 20/383 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+ + VAVSGGSDS LL + + A +VDH LR + E V+ + Sbjct: 19 PLPSRLGVAVSGGSDSTALLHLMSRIAEG---TDTNLFAATVDHGLRPESAAEAAKVAAL 75 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L I H ++ W L AR ARY L+ + A + I HT DDQ ETV Sbjct: 76 CWELEIPHEILKWTGWDGTGNLQDQARRARYRLLRDWAHAQDIPAIALGHTADDQAETVL 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R GLS M ++D + + RP L R +R +L+ + I W EDPSN + Sbjct: 136 MRLGRAAGV--TGLSAMPVVRMFD-GVALVRPLLFATRSQLRDYLVAQAIDWMEDPSNQN 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP------KYLTVHMRSII 250 RF+R++ R+ + L L + + + + +A L + LTV I Sbjct: 193 IRFDRIKARQSLGQ--LAELGISAESLARVAENLGHANTALAQYTQETAQRLTVEQAGSI 250 Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + + L ++ G P S++R + + +G+ +IG + Sbjct: 251 RLDCAGFSGLPKELQRRIVIGIVRWIAGGDYPPRQASVDRTISAVSAGRP--TTIGGCAL 308 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-DVPSGI 368 F W R + + L+ P WD R+ Q+ + R +P Sbjct: 309 VPDGEFAWFCRELNPVTDLVTSPG--LQWDRRWIVSGPDLPGAQVRALAERGLKQLPDWR 366 Query: 369 PPIIAQRALSSMPSKEGGKPLLA 391 + + AL + P+ G+ L++ Sbjct: 367 SRGLPRAALLATPAVWVGETLVS 389 >gi|161870026|ref|YP_001599195.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442] gi|161595579|gb|ABX73239.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442] Length = 436 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 114/312 (36%), Gaps = 14/312 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251 +D + R R R + + + + + +A+L I + + Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 305 Query: 312 RANFLWITRAVR 323 A L++ R + Sbjct: 306 YAGRLFVFRPEK 317 >gi|262192149|ref|ZP_06050310.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93] gi|262031998|gb|EEY50575.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93] Length = 440 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 145/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQVVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + + V P G+ R Sbjct: 356 PDDFSQLWVSFEPQGLEACPVGR 378 >gi|238897452|ref|YP_002923129.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259533725|sp|C4K338|TILS_HAMD5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|229465207|gb|ACQ66981.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 457 Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 145/373 (38%), Gaps = 39/373 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----H---CLRE 64 +++L LVA SGG DS LL L S+ D++ K+ AI H + Sbjct: 12 LLKNLGKHHKFLVAFSGGLDSTVLLHGLLSL-RDQNHLKLNIRAIHTHEKLIHRPENWSK 70 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + C + ++ VV + G+ AAAR RY + S K +++T Sbjct: 71 DADQRLTHCQSQCEQWKVPLEVVKMEVEPRGKGIEAAARTVRYQIFSNALKK--DEVLLT 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H +DQ ETV + +R GLSGM + + + RP L R ++ + L++ Sbjct: 129 GHHQNDQCETVLLALKRGSGP--AGLSGMPLAMPLGQS-QLLRPQLSFSRHSLQLYALEK 185 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYL 242 I W ED N +DRF+R +RR + L L + F + + A + L Sbjct: 186 GILWMEDEDNQNDRFDRNFLRRHI----LPLLTARWPHFLESTSRSAALCAEQETLLDEL 241 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLK 295 + + L+I ++ +A + ++ +P + R+ K Sbjct: 242 LSEQLCQLQSQEGTLSIQGLAACSEVKRNALLRRWLDSKKVPMPSRDQLARLWKEVALAK 301 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-------LS 348 S + + G I R L++ ++ + ++ ++ F L Sbjct: 302 SDAQPYLQCGEYQIRRFREHLYLFKSSKKSQPC------PALFSIKWPFTPESENKLVLP 355 Query: 349 DSLIQIGPQSYRK 361 D L ++ YR Sbjct: 356 DHLGELKCTPYRS 368 >gi|121586235|ref|ZP_01676025.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80] gi|153829935|ref|ZP_01982602.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39] gi|121549501|gb|EAX59527.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80] gi|148874570|gb|EDL72705.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39] Length = 440 Score = 232 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADK 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217] gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217] Length = 419 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 148/381 (38%), Gaps = 16/381 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VAVSGGSDS+ LL LH G +A++VDH LR A E V+ +C Sbjct: 20 PPPRLGVAVSGGSDSLALLHLLHDWQRA---GGPALAAVTVDHGLRPEAGAEAAEVAHIC 76 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +RL + H + W+ L AR ARY L+S+ A T I HT DD ET M Sbjct: 77 ARLNVPHHTLHWQGCGGSGNLPDRARRARYTLMSDWAAAQGLTDIAIGHTQDDLAETFLM 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + RP L RE +R L +W +DP+N D Sbjct: 137 RLARGAGVDGLAAM---RPRWTQEGVTFHRPLLGLAREALRDHLRGLRQTWIDDPTNVDT 193 Query: 198 RFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + R R R + +D L D R +++ V ++ Sbjct: 194 SYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALSHTTHAAARTLTRVEAGDLLID 253 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 N+ + LL + G P ++ ++ ++G+ + G +++ + Sbjct: 254 HAGFANLPDEIARRLLHGALQWLTGAEYPPRGAALSALLAAARAGQTMTLQ-GGLLLPAK 312 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD-SLIQIGPQSYRKADV-PSGIPP 370 + L +TR + L T +WD R+Q SD + I+I P Sbjct: 313 SGHLRLTREYDAVKDLRTPA--TALWDTRWQAIGPSDPADIEIAALGPAGLSACPDWRLS 370 Query: 371 IIAQRALSSMPSKEGGKPLLA 391 + + + P G L+A Sbjct: 371 GLPHASALATPGLWQGDSLIA 391 >gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 438 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 88/419 (21%), Positives = 164/419 (39%), Gaps = 51/419 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLI-ALHSVLSDRSFGKIKFSAISVDHCLRE 64 + S R +S I VA SGG DS+ LL + + S + + A + H L+ Sbjct: 1 MASSRKSQQSPNPGKRIAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQIFAFHIHHGLQR 60 Query: 65 TAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A D + + + + +I ++ NS+ + + AR RY +S+ + + Sbjct: 61 LADDWLIFCEKLAKKYKIHFDFRLLHLDNSQGLGNVESRARAGRYEALSDLCEEYGIEDL 120 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AH +DQ ETV ++ R G+ G+ D ++ + + RP L R+++ ++ Sbjct: 121 LLAHHQNDQAETVLLQLLRGSGVAGLAGMPINRDMQRHNHRITLWRPLLNQSRQELEAYA 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD----------IDLHALYLKMKKFQDLRVKVN 231 + + W EDPSN D ++ R +R+ V +++ + + Q L ++ Sbjct: 181 KEHKLKWIEDPSNQDTKYRRNALRKKVIPVLEKIQPEALVNIARSAQLLGEAQSLLNRLA 240 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-- 289 A I + + +IA++Q L + +L Y L+ Q+++P ++ Sbjct: 241 QQDAKAIIYHDQLKAEPLIALAQKDLLAANNVLRYWLQTQ------QLAMPSQERLKAWW 294 Query: 290 -----------VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW 338 + +L +R C+ G + + W+ +A LP W Sbjct: 295 RDLGKKIKADTKLEWLHDERRICLWRGMLQVGNLEEGRWVLKA---LPPNSKQLGFPADW 351 Query: 339 DGRYQFQN-------LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390 Q N IQI P++ P + Q A +P E PLL Sbjct: 352 VKHAQENNQISLRDRRGSEKIQIKPKT------PRKTLKNLFQEA--DVPPWERQAPLL 402 >gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479] gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479] Length = 462 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 141/349 (40%), Gaps = 35/349 (10%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M +ES+R F+ LV +++ +SGG+DS+ LL+ LH + ++ + I+ A+ Sbjct: 1 MHRKILESIREFIGENHMLVPGDRVIIGLSGGADSVSLLMILHELKNELN---IELFAVH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112 V H LR E A + Y ++ L + V ++ A R RY ++ E Sbjct: 58 VHHGLRGEEADRDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEE 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 +A+ I AH DDQ ETV R KG+G + I RP L Sbjct: 118 QRLAHHASKIAVAHHADDQAETVLYNLFRGSGLKGIGGM-------KPVRDTIIRPLLSV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQ 224 R++I ++L ++ IS+CED +N+ + R R+R + + + + K Sbjct: 171 TRKEILAYLEEKEISYCEDSTNSGTDYIRNRLRHEIIPAVRKRINEGAVSNILQAAKTAA 230 Query: 225 DLRVKVNNAVAMLIPKYLTVHMR-----SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ 278 A ++ K+ + I+ +IL DS + Y++R Sbjct: 231 AADTYFEKAAKQILEKHGIREKTDEGGICSVGIAAEILKQEDSIVRQYVIRQMIGETYQS 290 Query: 279 ISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 + +E +LF G+R + G + L I + + + Sbjct: 291 LKDITSVHVEAAEKLLFKPVGRRIQLPDGGCALRTYGE-LQIKKEGKTI 338 >gi|153854745|ref|ZP_01995979.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814] gi|149752652|gb|EDM62583.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814] Length = 473 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 136/339 (40%), Gaps = 40/339 (11%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR +V+ L H++ VSGG+DS+ LL L + + FG + + + H LR Sbjct: 14 ERVRAYVKKYHMLQEKDHVIAGVSGGADSVCLLFMLVKLQKEMRFG---LTVVHIHHGLR 70 Query: 64 ETAKD-EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + D + YV +C +L + H V + + L A R R + E N Sbjct: 71 GESADVDENYVRALCEKLDVELLAFHEDVGRYAKEQKLTLEEAGRNVRRHIFEEVCHRKN 130 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I AH +D ET+ R KG+G + ++ RP L RR++I Sbjct: 131 GTRIALAHHQNDNAETLLWNLSRGCGLKGIG-------GISPVDGKYIRPLLGVRRQEIE 183 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKV 230 +L + NI +C D +N +D + R R+R V + + M++ + + + Sbjct: 184 EYLKENNIDYCTDETNLEDHYTRNRLRNHVIPYLEREINPRAVSHMADTMEQMRTVWAFM 243 Query: 231 NNAVAMLIPKYLT---VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 V + ++ + + +++ T+ +L+ G + + Sbjct: 244 EEEVEKCRKYCVKPKQDKADGVVILEEGFRSVNETVRTFLIHELLCETAG-----RKKDI 298 Query: 288 ERVMLFLKSGKRGCVSIGRVVI------DRRANFLWITR 320 E++ + L + ++++ +R +W+ + Sbjct: 299 EQIHVKLVEELMEHQTGRKIMLPYEMTGERCYEGIWLHK 337 >gi|153213784|ref|ZP_01948992.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587] gi|124115708|gb|EAY34528.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587] Length = 440 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 147/382 (38%), Gaps = 27/382 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F + L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFAQQLARYPFRKLLLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAGALK 237 Query: 248 SII----AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300 I +S L S + L + A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAALAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANP 296 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-P 356 + + + + R + L++ R+L L PE+ + G Q S + I P Sbjct: 297 KLKLNHIEVRRFQHCLYLVPPERDLSGWRCALVPEQRLPLPQGLGHLQLTSKAGGNIKLP 356 Query: 357 QSYRKADV---PSGIPPIIAQR 375 +R+ V P G+ R Sbjct: 357 DDFRQLWVSFDPQGLEACPVGR 378 >gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13] gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13] Length = 473 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 27/331 (8%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E+V F+ L + ++V VSGG+DSMGLL L S+ + +K VDH R Sbjct: 3 ETVSTFIDKFDLLPSHSTVVVGVSGGADSMGLLHYLDSIKEAKR---LKLVVAHVDHMFR 59 Query: 64 -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 +++++ +V + C + I VS ++ + + AARE RYA + + Sbjct: 60 GAESEEDMDFVKEQCEKREILFEAEQIDVSAYQNEKKLSVQVAARECRYAFYEKVMRKYR 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A ++ H DDQ+ET+ MR R + G +G+ + + I RPFL + +I Sbjct: 120 ADVLALGHHADDQVETILMRLGRGSSM--SGHAGILPKRTFGAGV-IVRPFLTVTKSEIM 176 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV- 234 +L + + DPSN D + R R+R + I + L+ + + F + + + Sbjct: 177 EYLKANEVPYRHDPSNDKDAYRRNRLRHHILPILKEEFPGLHQRFQAFSEQIQESEQYIG 236 Query: 235 ----AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME-- 288 I + ++ + +L + L +++ P S+ Sbjct: 237 ALMEKEWIDVIKSKENDRVVLDRKPLLFMAKPLQRRGIQLILNYLYNNEIPPSLSSIHID 296 Query: 289 RVMLFLKSGK-RGCVSI--GRVVIDRRANFL 316 ++ L+S G + G VI + Sbjct: 297 NLLSLLESEHPSGRLHFPNGLQVIKSYNECI 327 >gi|297580884|ref|ZP_06942809.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385] gi|297534710|gb|EFH73546.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385] Length = 440 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|210613792|ref|ZP_03289906.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787] gi|210151001|gb|EEA82009.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787] Length = 476 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 26/284 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E +R +V + I+V VSGG+DS+ LL L + + F + + V+H L Sbjct: 5 LEKIRRYVEKWHMIENGDKIIVGVSGGADSICLLFVLIQLQKEIPF---ELVCVHVNHGL 61 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R A + YV +C + + + V+ K + L A RE R + K Sbjct: 62 RGIDADADEMYVKKMCEKHCVPCEIYREDVALIAKKRKQSLEEAGREVRREAFVKTLKRY 121 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T I AH +D ET M R KG+G + +N + RP L R ++ Sbjct: 122 GGTKIALAHHQNDNAETFLMNVARGAGLKGLG-------GIRPVNGNVIRPLLAVERGEV 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--------ALYLKMKKFQDLRVK 229 +L + I++C D +N D + R R+R + + M++ +++ Sbjct: 175 EKYLEEEGIAFCVDETNKSDAYMRNRIRNHILPYFEEQVNKRTVTHINETMERLREIEGF 234 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + + + + + + I + ++L+ Sbjct: 235 LEEQTEISWRQCTRTEETGTVILQAEFQQIPHVIQSFVLKKVLW 278 >gi|229522189|ref|ZP_04411606.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80] gi|229341114|gb|EEO06119.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80] Length = 440 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 81/381 (21%), Positives = 146/381 (38%), Gaps = 25/381 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLSRYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 W D SN D R+ER +R V + ++ +++ +L + + + + L Sbjct: 179 WVIDESNADIRYERNFLRHQVTPVLTDRWPSIRQAVQRSAELCAEQEALLQEFLAEALKK 238 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 + + +S +L S + L + A ++ +P + ER+ Sbjct: 239 AITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPK 297 Query: 302 VSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-PQ 357 + + + + R + L++ R+L L PE+ + G Q S + I P Sbjct: 298 LKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLPD 357 Query: 358 SYRKADV---PSGIPPIIAQR 375 + V P G+ R Sbjct: 358 DPSQLWVSFEPQGLEACPVGR 378 >gi|254225768|ref|ZP_04919373.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51] gi|125621674|gb|EAZ50003.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51] Length = 440 Score = 232 bits (592), Expect = 9e-59, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F + L IL+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFAQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + + AREARY +++ H TL++ Sbjct: 64 WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R V + L + +++ ++ L+ ++L ++ Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237 Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + ER+ Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355 + + + + R + L++ R+L L PE+ + G Q S + I Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355 Query: 356 PQSYRKADV---PSGIPPIIAQR 375 P + V P G+ R Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378 >gi|88857960|ref|ZP_01132602.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas tunicata D2] gi|88819577|gb|EAR29390.1| putative lysidine forming enzyme, modifying isoleucine tRNA decoding AUA [Pseudoalteromonas tunicata D2] Length = 428 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 19/341 (5%) Query: 10 RFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F + + L VA+SGG DS+ LL + + + +K A+ V+H + A Sbjct: 8 HQFAKQIPPNVKTLTVALSGGVDSVVLLHLVATYQALN--PDVKVQAVHVNHGISPHAHA 65 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +C+ L I + +S + K + L A ARE RY + + +I+ Sbjct: 66 WQDFCQRLCAELTIPFNAISVTIDKKNRQSLEAVARELRYQALVSVTQVQ--DVILLGQH 123 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET +++ +R GLS M +T ++ + + RP L R I +F Q N+S Sbjct: 124 QDDQVETFFLQLKRGSGL--SGLSAMANTSEFEGRI-LVRPLLETSRASIEAFCQQFNLS 180 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 ED SN+D +++R +R + +L++ + + + LI + + + Sbjct: 181 HIEDESNSDVKYDRNYLRHQILP-ELNSRFAGFNQCVARSASLLREQQTLINEIAELDHQ 239 Query: 248 SIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRG 300 S+ SQ +L + +LR A+ + +P Y + ++ L K+ Sbjct: 240 SVALGSQLQILKLLALSDIRRRNVLRYWLAL--HRCLMPSYAVLAELVSQLQSEKADANL 297 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341 + + + + L+I + L + + + DGR Sbjct: 298 VIKLSAGKLRQYNQLLYIVKDQVKLDDCKVDSNQLLLADGR 338 >gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 466 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 17/326 (5%) Query: 6 IESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I++VR + ++ L+AVS G DSM LL + + F V+H LR Sbjct: 3 IQTVRGQLTAIDPDKNRRFLLAVSTGVDSMVLLQIFCQLFPEMQKEPC-FGVAHVNHQLR 61 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + E ++ C I W+N P+TG+ A+AR+ RY ++ +++ Sbjct: 62 PASAKEAAFLRQYCQERGIPFYERCWENP-PETGVEASARDFRYTFFADVMSQEGYDVLL 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ+ET+ M+ R+ + G GM + + + RP L + I + Sbjct: 121 TAHHSDDQVETMLMKMMREGRLRSAG--GMQQQQPFHTGV-LLRPLLTVSKAAIYDYAQA 177 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236 + I + ED SN + + R R+R+ V + FQ L +V Sbjct: 178 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSEEVQFANQLIQQEQQQ 237 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295 + ++ ++ Q + ++ P + + +V+ L Sbjct: 238 WLSAFVQQQAARLVIDLQQLPTFSPAQRYFFYAGFLQQAEAFTKQPLNQKQLPQVLRLLD 297 Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319 K + +++ + + R + L + Sbjct: 298 EKKGQWQLALHKQWQLRRSYDQLLLE 323 >gi|90413546|ref|ZP_01221537.1| hypothetical cell cycle protein MesJ [Photobacterium profundum 3TCK] gi|90325478|gb|EAS41961.1| hypothetical cell cycle protein MesJ [Photobacterium profundum 3TCK] Length = 439 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 126/312 (40%), Gaps = 17/312 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++A+SGG DS LL + + R + + A+ V H L A Sbjct: 19 RFVIALSGGLDSRVLLHLMGRFI--RDNPQYQCDAVHVHHGLSNNADKWALQCQQWAFDE 76 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I + + + ARE RY +S+H + + ++TA DDQLET + Sbjct: 77 QITCHIEHVTLVLGNRISVEQQAREQRYLALSKHIQQDDC--LLTAQHADDQLETFLLAL 134 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R GL+ M ++ + + + RP L+ R+ I + + + W ED SN D R+ Sbjct: 135 KRGSGP--AGLASMPESTTFGIGYHL-RPLLQVIRQSITDYGITHQLEWVEDESNQDQRY 191 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R +R + + LH + ++K + L+ + L H+ + + Q + + Sbjct: 192 DRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLLKALHVDQSLKIV 250 Query: 260 D---STLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313 + + L+R ++ + +P ++++ + V I R Sbjct: 251 ELGSERIGKQLIRQWLSLFT--VLMPSQAQLQQIWQSVVLAQDDANPQVCWDNHQIRRYK 308 Query: 314 NFLWITRAVRNL 325 L++ + ++ Sbjct: 309 QRLYVVKQWADI 320 >gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella grylli] gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella grylli] Length = 458 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 22/326 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF E + F ++ A +A SGG DS LL AL +L + AI ++H Sbjct: 1 MF--THEKLAFLLKQYPVSACFWIAYSGGLDSHVLLYALSQLLPTE-----RLRAIHINH 53 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA 119 L + + C +L I +V+ K L A+ REARY I + K Sbjct: 54 GLHIHSDKWAKICRHACEKLTIDCEIVTLDIRPKTGESLEASLREARYHAIEK--KIPAG 111 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH +DQ ET ++ R KG L M N+++ RP L R+++ + Sbjct: 112 NFLLTAHHRNDQAETFLLQLFRGAGLKG--LISMPFCRPLTNNVYLMRPLLNFTRQELYA 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-- 237 + +++W ED SN + RF R +R V K + A A+L Sbjct: 170 YAQTHHLTWIEDDSNKNQRFSRNFIRHQVLPRIQQRWPQAHKTIARSAANLAEAHALLDE 229 Query: 238 --IPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + + +I + + + +LR G SLP + ++++ + L Sbjct: 230 IAEQDWNNIQGPEWHSIMISRWMTLSAKRQINVLRYGLKRHG---SLPSQKQLKQIDILL 286 Query: 295 KS--GKRGCVSIGRVVIDRRANFLWI 318 K VS G V + R ++L+ Sbjct: 287 KRRVNTTFQVSWGNVQLRRYRDYLYF 312 >gi|330445162|ref|ZP_08308814.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489353|dbj|GAA03311.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 434 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 122/324 (37%), Gaps = 18/324 (5%) Query: 12 FVRSLV-----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 F R L+ ++A SGG DS LL + ++ + A+ V H L + A Sbjct: 6 FSRQLLTTHNASSKRFVLAFSGGLDSRVLLDLIARFIAQ--YPAYSCHAVYVHHGLSKNA 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + I+ V + L AAREARY +++H + ++TA Sbjct: 64 DVWAEKCLAWTKQSGISCDVERVMVETGNRISLEQAAREARYNALAKHVQQ--GDTLITA 121 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ+ET + +R GL+ M + + + RP L R +I + Sbjct: 122 QHSDDQIETFLLALKRGSGP--AGLASMPVILPFAKGTHL-RPLLNVTRAEIEQYGKAHQ 178 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + W ED SN D+R++R +R + L + + K + L+ + L+ Sbjct: 179 LEWVEDESNQDERYDRNFIRHQITPR-LVERWSGIHKAVARSSALCGEQEALLEELLSTQ 237 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGC 301 + +L D T + + Q + +P +E++ + K Sbjct: 238 LAQATQQDGSLLLADDTTQRVGMALIRQWLKRQKVVMPSLAQLEQIWFNVVLAKQDANPK 297 Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325 + V + R L++ + ++ Sbjct: 298 LCWSGVEVRRSQGKLYLLQQWSDI 321 >gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442] gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442] Length = 480 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V F + L + I+V VSGG DS+ LL L L R K+K VDH Sbjct: 8 TFVEKVDEFAKQHDVLEKHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V ++C ++ + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + ++ DPSN + + R R+R++V ++FQ+ + + A Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273] gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273] Length = 480 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 14/242 (5%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + V FV+ L + I+V VSGG DS+ LL L L R+ +++ VDH Sbjct: 10 VGKVDDFVKRHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTI 117 R + +++++V +C L + + S+ Q AARE RYA + K Sbjct: 67 RGNESHEDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKY 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + H DDQ+ET+ MR R KG +G+ + N ++ RP L +E+I Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + + + DPSN + + R R+R++V +KFQ V++ A L Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYL 243 Query: 238 IP 239 Sbjct: 244 QE 245 >gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus casseliflavus ATCC 12755] gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus casseliflavus ATCC 12755] Length = 467 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 132/326 (40%), Gaps = 17/326 (5%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I++VR + ++ L+AVS G DSM LL + + ++ F V+H LR Sbjct: 4 IQTVRGQLTAIDPEKKRRFLLAVSTGVDSMVLLQVFCQLFPEMQKEQV-FGVAHVNHQLR 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + +E ++ C I W+N P+TG+ A+AR+ RY ++ +++ Sbjct: 63 PASAEEAAFLRQYCQERGIPFYERCWENP-PETGIEASARDFRYTFFADVMSREGYDVLL 121 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ+ET+ M+ R+ + G GM + + + RP L + I + Sbjct: 122 TAHHSDDQVETMLMKMMREGRLQSAG--GMQQQQPFHAGI-LLRPLLSVSKTAIYDYAQV 178 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236 + I + ED SN + + R R+R+ V + FQ L V++ Sbjct: 179 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSVEMQFANQLIQQEQQQ 238 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295 + ++ ++ Q + ++ P + + +++ L Sbjct: 239 WLSAFVQQQATRLVIDLQQLPTFSPAQRYFFYAGFLQQAEAFTKQPLNQKQLPQLLRLLD 298 Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319 K + +++ + + R + L + Sbjct: 299 EKKGQWQLALHKQWQLRRSYDQLLLE 324 >gi|332290166|ref|YP_004421018.1| hypothetical protein UMN179_02108 [Gallibacterium anatis UMN179] gi|330433062|gb|AEC18121.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 431 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 132/329 (40%), Gaps = 26/329 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++ + L+ +SGG DS LL + +KF AI + H + A + + Sbjct: 16 QNALKNKAFLIGLSGGVDSTVLLHLFVRLAERM---PLKFRAIHIHHGISPNADHWLNHC 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C + + S + + Q + A AR+ RY I +H + +++TAH DDQ E Sbjct: 73 RQLCQQFNVPFSFEKVQLQQ-QRNIEAQARQVRYQAIQQHL--NHNEMLVTAHHLDDQSE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R KG+ T+ ++ I RP L R + +L + ++ D S Sbjct: 130 TFLLALKRGSGVKGLAAM---PTLSRLFSVPIFRPLLSVTRRQLEQYLAENQLTAIFDES 186 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SIIA 251 N D R+ER +R V L L + V+ A + Sbjct: 187 NDDLRYERNFLRHQV----LPLLRQRWATIDQAIVRSAQHCAEQEQLLEELLQPIFQQHL 242 Query: 252 ISQDILNIDS------TLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302 + + LN+ YLLR A Q +P + ++ ++ + K+ ++ + Sbjct: 243 MQDNSLNLKGFYDYSLRKQRYLLRYWFAHL--QQPMPSQKQLQILLDEVIGAKNDRQPEL 300 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILY 331 + + V+ R L++T ++L + L Sbjct: 301 QLNQKVVRRYQQQLYLTPIYQDLRAIKLP 329 >gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025] gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 412 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 156/381 (40%), Gaps = 26/381 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +AVSGG DSM LL ++VDH LR A E V VC+RL Sbjct: 19 LGLAVSGGGDSMALLHLAAEAGIAARA-------VTVDHGLRPEAAAEALEVGRVCTRLG 71 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H ++ W+ + LM AR AR LISE A+ + HT DD ET MR R Sbjct: 72 VPHDILRWEGWDGRGNLMDQARRARLRLISEWARGAGLDAVALGHTRDDVAETFLMRLAR 131 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + RP L RE++R L +R +W EDPSN + F+R Sbjct: 132 GAGVDGLAAM---RAERRAEGMLWLRPLLGIGREELREELRRRGAAWFEDPSNENRAFDR 188 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VRVR+ ++ + L ++R ++ + + V R + ++ + Sbjct: 189 VRVRQAMQGLAGLGLGPERLAEVAGHLAEVRAALDAQLHEAARTLVRVD-RGDVLMAPGV 247 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L++ +L LLR + P ++ R+M L+ GK + R+V R + L Sbjct: 248 LDLPDEILRRLLRGAVQWVASAEYGPRGPALARLMRDLRQGKGRTLHGCRLVWRR--DGL 305 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV------PSGIPP 370 I R + + L +WDGR++ Q I P R P Sbjct: 306 RIGREWQAVRDLTAPVG--ALWDGRWRLQGPPQEDISDQPLEIRALGANGLDRCPGWRAT 363 Query: 371 IIAQRALSSMPSKEGGKPLLA 391 + + +L + P G LLA Sbjct: 364 NMPRASLLASPGVWRGPDLLA 384 >gi|212636261|ref|YP_002312786.1| cell cycle protein MesJ [Shewanella piezotolerans WP3] gi|212557745|gb|ACJ30199.1| Cell cycle protein MesJ [Shewanella piezotolerans WP3] Length = 452 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 18/318 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P I++A SGG DS L L + + + + V H L + A D ++ Sbjct: 21 QKPRKIVLAYSGGVDSEILAQGLSLFAKQQPQFEYQL--VHVHHGLSDNADDWAKHCQAQ 78 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++ +V + + P+ + A AR RY + A+ A ++MTAH DDQLET+ Sbjct: 79 AALYKLPCTVARVEVTIAPRVSIEAQARSVRYQAL--LAQMEAADILMTAHHQDDQLETI 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R KG LS M +D N W+ RP L + ++ ++ ++ IS +D SN Sbjct: 137 LLALKRGLGPKG--LSAMGKVQSFDKNKWLIRPLLDISKSEVEAYAMKHQISHIQDESNF 194 Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL--TVHMRSII 250 D++++R +R+ + A+ + +L + V + L + Sbjct: 195 DEKYDRNFLRQSIIPSLKQRWSAIAATASRSAELCAMQQSVVDEEMAARLPSIQRLEGEE 254 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 ++ + + + + L + + + P E + +L K+ + + V Sbjct: 255 SVIELAALAEHSKAWQALLLRGQMDQLGFAPPSKVQAEEILSQLLDAKADANIEIKLADV 314 Query: 308 VIDRRAN---FLWITRAV 322 VI R FL +T+ Sbjct: 315 VIKRYKGAGYFLALTKEA 332 >gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4] gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4] Length = 283 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V F + L + I+V VSGG DS+ LL L L R K+K VDH Sbjct: 8 TFVEKVDKFAKQHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V ++C ++ + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + ++ DPSN + + R R+R++V ++FQ+ + + A Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|296186909|ref|ZP_06855310.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7] gi|296048623|gb|EFG88056.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7] Length = 464 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 143/342 (41%), Gaps = 25/342 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + ++++ + R ++VAVSGG DSM LL L+S+ R I+ A V+H Sbjct: 1 MIETVLKTINRY-RMFNKGDKVIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNH 56 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 CLR + + YV + C +L I S +K +A R ARY ++ K Sbjct: 57 CLRGNESDKDEEYVKEFCEKLNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +NA I AH +DQ ET+ MR R G GL G+ N++ RP + R Sbjct: 117 ELNAQKIAIAHNANDQAETILMRIMR-----GTGLEGLVGIKAVRDNIF-VRPLIDVTRH 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVN 231 +I + + NI+ D +N + + R +VR + + + + D N Sbjct: 171 EIEEYCCKENINPRIDKTNLETIYSRNKVRLELIPYIQENFNKDIIKVLNRLSDTIKIDN 230 Query: 232 NAVAMLIPKYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + + + + + IS++ + ++ ++R + G ++ + Sbjct: 231 EYLETVAKEKFKKYCDIQGEKVIISKEAFLENEAIITRIIRKALYEVTGNLNNFEKIHIY 290 Query: 289 RVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 ++ +GK + VV ++ + ++I + V+ + Sbjct: 291 DIINIQSRSTGKNIDLPNHVVVSNKYGD-IYILKKVKENKEV 331 >gi|54310067|ref|YP_131087.1| cell cycle protein MesJ [Photobacterium profundum SS9] gi|61216518|sp|Q6LN41|TILS_PHOPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46914506|emb|CAG21285.1| hypothetical cell cycle protein MesJ [Photobacterium profundum SS9] Length = 435 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 130/318 (40%), Gaps = 17/318 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ + ++A+SGG DS LL + + + + + A+ V H L A + Sbjct: 13 NIPHSNRFVIALSGGLDSRVLLHLMGRFIQEN--PQYQCDAVHVHHGLSVNADKWAQQCL 70 Query: 75 DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +I + + + ARE RY +S+H + ++TA DDQLE Sbjct: 71 QWAFEEKITCHIEHVTLVLGNRISVEQQAREQRYLALSKHVQQ--GDCLLTAQHADDQLE 128 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GL+ M ++ + ++ + RP L+ R+ I + + + W ED S Sbjct: 129 TFLLALKRGSGP--AGLASMPESTTFGISYHL-RPLLQVTRQSITDYGIAHQLEWVEDES 185 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D R++R +R + + LH + ++K + L+ + L H+ + + Sbjct: 186 NQDQRYDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLSKALHVD 244 Query: 254 QDILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307 Q + ++ + L+R ++ + +P ++++ + V Sbjct: 245 QSLKIVELGSERIGKQLIRQWLSLFT--VLMPSQAQLQQIWQSVVLAQDDANPQVCWDNH 302 Query: 308 VIDRRANFLWITRAVRNL 325 I R L++ + ++ Sbjct: 303 QIRRYKQRLYVVKQWADI 320 >gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17] gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17] Length = 480 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E V F + L + I+V VSGG DS+ LL L L R K+K VDH Sbjct: 8 TFVEKVDEFAKQHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115 R + + +++++V ++C ++ + + S+ Q AARE RYA + K Sbjct: 65 MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A + H DDQ+ET+ MR R KG +G+ + ++ RP L +E Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I ++ + ++ DPSN + + R R+R++V ++FQ+ + + A Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241 Query: 236 MLIP 239 L Sbjct: 242 YLQE 245 >gi|238792737|ref|ZP_04636368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909] gi|238727845|gb|EEQ19368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909] Length = 455 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 131/319 (41%), Gaps = 17/319 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG D +L+ L L + ++K AI + H L A V++ Sbjct: 18 QLGDHRHVLVGFSGGLD-SSVLLHLLVSLRQQLLPELKVRAIHIHHGLNPLADCWVKHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + + VV G+ AAAR ARY S H +++TA DDQ ET Sbjct: 77 QQCDQWDVPLEVVRVNIDPRHNGIEAAARTARYQAFSSHLAAN--EVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSSMAGRMPFAHS-QLLRPLLAFSRETLENYAQVQQLRWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 D+RF+R +R V + L+ + + + L+ + L +++ + Sbjct: 192 QDNRFDRNFLRLSVLPL-LNQRWPHFAQATARSASLCAEQEQLLDELLADNLQQLQNPDG 250 Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306 + +L +LR A GG +P ++R+ L + +++G Sbjct: 251 ALSIEGLLLASEAKRGAILRRWLA--GGGALMPSQNQLQRLWLEVAMARQDAEPQLTLGA 308 Query: 307 VVIDRRANFLWITRAVRNL 325 + R +L++ + + Sbjct: 309 HQVRRFRQYLYLLPQLAEI 327 >gi|268601288|ref|ZP_06135455.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] gi|268585419|gb|EEZ50095.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] Length = 436 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITRAVRNLPTLILYPEE 334 A L++ + + L Sbjct: 306 YAGRLFVFASEQLAKPAFLKDGT 328 >gi|268594781|ref|ZP_06128948.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae 35/02] gi|268596895|ref|ZP_06131062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae FA19] gi|268548170|gb|EEZ43588.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae 35/02] gi|268550683|gb|EEZ45702.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Neisseria gonorrhoeae FA19] Length = 435 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 119/338 (35%), Gaps = 15/338 (4%) Query: 1 MFLSPIES-VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M L E ++ + VA+SGG DS+ LL L F A+ + Sbjct: 1 MTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIH 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H L A D + + C L + V K G+ AAAR+ RYA + Sbjct: 58 HGLSPRADDWADFCRNYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGF 113 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AH DDQ+ET + R + L+ M N I RP L R+DI Sbjct: 114 DVLALAHHRDDQIETFMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWD 171 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + + + ED SNTD + R R R + + + + + +A+L Sbjct: 172 YARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEE 231 Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + + L ++LR + I +P ++ + L Sbjct: 232 VVVQDCRWVCGAGYFDTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTE 289 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 K G ++ + A L++ + + L Sbjct: 290 AKTGRWNLQGFELHHYAGRLFVFASEQLAKPAFLKDGT 327 >gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC 11741] gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC 11741] Length = 453 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 121/297 (40%), Gaps = 13/297 (4%) Query: 13 VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 +R L + +L+AVS G DSM LL + + I+ + +DH LRE +K+E + Sbjct: 17 LRDLKISNRKVLLAVSTGVDSMVLLSGMLKLSK---VLNIEINVAYIDHQLREQSKEETK 73 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + C I V W K P + AAARE RY + K N ++TAH DD Sbjct: 74 FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 133 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET M+ R + L + ++ + I RP L +++I + Q I + E Sbjct: 134 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 191 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247 D +N D ++R R+R + + + + ++ N A+ + L + Sbjct: 192 DETNKSDDYQRNRLRHHIIPVLKAENPEFLNHVLEYTQQLTNNLQAIQEVADVKLNKISK 251 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + LL + G +I +++++ L K+ Sbjct: 252 EETLDYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDEKKPQAKF 305 >gi|329298696|ref|ZP_08256032.1| tRNA(Ile)-lysidine synthetase [Plautia stali symbiont] Length = 432 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 76/368 (20%), Positives = 137/368 (37%), Gaps = 25/368 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A ++A SGG DS LL L S R +++ + V H A + Sbjct: 10 LPADARCVLAFSGGLDSSVLLYQLVSW--QRQQPQLRVRTLHVHHGFSPNADRWAAHCQQ 67 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I V+ + G+ AAAR ARY + H + ++TA DDQ ET+ Sbjct: 68 QCQQWHIPCEVLRVQVDARAGGIEAAARTARYQALFTHLQP--GEYLLTAQHLDDQAETL 125 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +R G+ + W RP L R+ + ++ + + W +D SN Sbjct: 126 LLALKRGSGPAGLAAMPQQRQV---NGHWHLRPLLNLSRQQLEAYAVGHQLDWIDDESNA 182 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253 D R++R +R+ V + L A + + L+ + L+ + + Sbjct: 183 DRRYDRNFLRQDVLPL-LQARWPHFSAASARSAALCGEQEQLLDELLSEQLAQLTDAQGA 241 Query: 254 ---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 +L LLR GG +P +++R+ ++ + + C+ G Sbjct: 242 LHFPPLLACSEARRHALLRRWIGERGGA--MPARDALQRITDEVMHSREDAQPCLRFGAH 299 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYRKADVPS 366 + R L+ LP + + W Q L D L ++ + + P+ Sbjct: 300 ELRRYRERLYW------LPRQHSLSQHSLTWQQLTQPLILPDGLGELHASPALAELCRPA 353 Query: 367 GIPPIIAQ 374 +I + Sbjct: 354 ADEQVIVR 361 >gi|225027805|ref|ZP_03716997.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353] gi|224954855|gb|EEG36064.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353] Length = 513 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%) Query: 1 MFLSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ E V F++ IL+ +SGG+DS+ L L+ R +K A+ Sbjct: 1 MWDKHWERVDSFLKKWKMVQEGDSILLGISGGADSVCLA---RYFLARREALSLKLYAVH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISE 112 ++H LR E AK + +V D C + ++ +V + ++ + + A R ARY + Sbjct: 58 INHMLRGEEAKRDEEFVQDFCHKWNLSLNVEYRNIKEESRQKKCSEEEAGRIARYECFEK 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 +AK + I AH +D ET+ R R +GM + +N I RPFL Sbjct: 118 YAKEYHCGKIAVAHHQNDAAETILFRMLRGTGPQGMA-------GILPVNGKIIRPFLCL 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 RE+I L ++ +D +NT++ + R +R + H +L +++ Sbjct: 171 SREEIMDILQNIGQNYVDDSTNTNEEYSRNYIRHRILPEMEHVNQKAAAHISELGMQMQE 230 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLRVSAAICGGQISLPGY 284 +A + P+ ++ ++IA Q L ++ ++R G Sbjct: 231 LLAYVTPQMEKLYNENVIANEQGELFLEEKTFSVMSLFEQKEMMRRMLFEISGHRKDISL 290 Query: 285 RSMER-VMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 +E+ + L + V+ R + L + + Sbjct: 291 VHVEQMLALMANKEGKQQNCPYGVLAKRVRDGLLLMK 327 >gi|237807600|ref|YP_002892040.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187] gi|237499861|gb|ACQ92454.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187] Length = 441 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 130/323 (40%), Gaps = 17/323 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 SV + L+ P H+LV SGG DS LL L +S R A+ V H L A Sbjct: 3 ASVFSVLDQLIRPGHLLVGFSGGLDSRVLLELLARYISQRD--GFSLQAVHVHHGLNPKA 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + VC L + + K + L AR+ARY + ++ +++TA Sbjct: 61 DQWLTHCAQVCDVLTVPFIAKRVEIEKKARQSLEDLARQARYDVFRQNLPEGG--VLLTA 118 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLET+ + +R +G+ + + RP L R+ + + + + Sbjct: 119 HHQDDQLETLLLALKRGSGPRGLSAMPVKTAFA---GGHLVRPLLTFSRQQLSDWAISQQ 175 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +SW ED SN DDRF+R +R+ V + + + L + + + + L Sbjct: 176 LSWIEDDSNQDDRFDRNFLRQKVIPLLRQRWPEITATASRTAGLCAEQETLLDEIAQQDL 235 Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 ++ +L N+ LLR G ++P ++++ + Sbjct: 236 MASQHPDGSLDISLLDNLSLARRHQLLRFWLRQRTG--TVPSQVQLQKIWPEVALAREDA 293 Query: 299 RGCVSIGRVVIDRRANFLWITRA 321 + + +I R + L+ A Sbjct: 294 TPELVWQKGIIRRYQHRLYQVNA 316 >gi|291043882|ref|ZP_06569598.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] gi|291012345|gb|EFE04334.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] Length = 445 Score = 230 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314 Query: 312 RANFLWITRAVRNLPTLILYPEE 334 A L++ + + L Sbjct: 315 YAGRLFVFASEQLAKPAFLKDGT 337 >gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396] gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Hahella chejuensis KCTC 2396] Length = 445 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 143/399 (35%), Gaps = 24/399 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + + +A SGG DS LL A ++ + AI V H L A + Sbjct: 25 LPDFSRLFIAYSGGLDSSVLLHAARRAWPAKT----QIEAIHVHHGLSPNADAWAEHCQK 80 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L +A L AAAREARY + + +++ H +DQ ET+ Sbjct: 81 ECQSLDVACHAHHVSVMAVGDSLEAAAREARYRVFERYLSEHADAVLLQGHHQNDQAETI 140 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + + KG L+G+ + + RP L R ++ + + +SW ED SN Sbjct: 141 LFRLLKGHGVKG--LAGIPRQRTLGKGI-LRRPLLDFTRLELEALAQRWGLSWVEDESNV 197 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D F+R +R + + + +++ A ++L ++ + Sbjct: 198 DAVFDRNFLRNEILRPMSARWRNAVAMIAETGRRMSEASSLLDELAEIDLQGETVSADEL 257 Query: 256 ILN----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 L + +LR G S + ML + ++ C S+G V+ R Sbjct: 258 ELAVLSGLSPHRRKNVLRYWLQAAGLTPSESDLAEILAQMLHAEGSRQPCYSLGESVLRR 317 Query: 312 RANFLWITRAVRNLP---TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 L++T A+ P EE + + + + + R+ V + Sbjct: 318 HDGKLYLTEAIDAPPSGYEAAWSLEEALL-------TPVGKLIAEPAHEGVRQPTVDETV 370 Query: 369 PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407 + P GG P +++ + D+P Sbjct: 371 IVRFRRGGERFRPKGRGGSR---PLKKWLQEQDIPPWRR 406 >gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633] gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633] Length = 450 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 78/363 (21%), Positives = 140/363 (38%), Gaps = 18/363 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL + + + F ++FS + + H LR+ + +E V + C+ I Sbjct: 21 LLAVSGGVDSMVLLESFFKL--QKKFPTLQFSVVHIHHHLRKESDEEEEMVRNFCNERSI 78 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W+ + + G+ AR+ RY + E K A ++ AH DDQ ETV M+ R Sbjct: 79 SIEVYHWEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHADDQAETVLMKLTR 138 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G ++GM + ++ RPFL +ED+ + I + ED SN + R Sbjct: 139 GSTIEG--IAGMKSIRPFSEG-YLIRPFLTVDKEDLYEYASIHQIPFKEDSSNQSLEYTR 195 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----- 256 R R+ + + +K + + +++ + ++ + Sbjct: 196 NRFRKEIIPLFKQENSKFNQKIHEFTKTLQEQQEVILMLANQWMEQELLELHNGWSWDKG 255 Query: 257 --LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + L +L + GG +S ++ ++ S + G R Sbjct: 256 RYIKQPQGLQKVILVEISKKLGGLLSAKNVLDIQEAIISDTSQMSLNLPNGWSFQKRYQQ 315 Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP-QSYRKADVPSGIPPIIA 373 L I + +P + E + D D I Q + P I Sbjct: 316 LLIIKEESKEIPYQEIRIEGFQLAD----IVLSEDERISFTAEQGWEMFLSMEDFPLTIR 371 Query: 374 QRA 376 +R Sbjct: 372 RRK 374 >gi|312128221|ref|YP_003993095.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778240|gb|ADQ07726.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 456 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 135/335 (40%), Gaps = 28/335 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL + + + S + + ++ Sbjct: 1 MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A D+ ++V ++C R I +K A R ARY+ E A+ Sbjct: 58 HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAQ 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +N I+ H +D +ET ++ R +G+ + + I+RP + RE Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGMEGLA-------SVPPVRDIIARPLINVSRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227 +I F NI + D +N +++R VR + + L+ ++ ++ ++ Sbjct: 171 EIEEFAKVNNIPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + + + N+ + L ++++ IS + + Sbjct: 231 DQIEELAQKYFQECVQKEDIYYVLNIEKTKNLPAFLRRRIIKMILEYFNSAISYDMLKEI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 E + L SGK+ +V++++ + L R Sbjct: 291 EDLFS-LPSGKKKLYK--DLVVEKQNDSLVFYRKA 322 >gi|297520460|ref|ZP_06938846.1| tRNA(Ile)-lysidine synthetase [Escherichia coli OP50] Length = 286 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 17/291 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ AR+ RY + + +++TA DDQ E Sbjct: 65 ENVCQQWQVPLVVERVQLAQEGLGIEVQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ G + RP L R ++ + L + W ED S Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252 N DD ++R +R V + L + F + + A + + Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235 Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVMLFLKSGK 298 Q L I L R +A + G +P ++ R+ + + Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAR 286 >gi|253996656|ref|YP_003048720.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8] gi|253983335|gb|ACT48193.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8] Length = 500 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 167/429 (38%), Gaps = 64/429 (14%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +L P +L+A+SGG DS LL L + RS + A+ V H L A + Sbjct: 72 ALAAPPRLLLALSGGLDSAVLLHLLAGL---RSSLGFELYALHVHHGLSPNADAWAAWCE 128 Query: 75 DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L++ S+ K ++ G+ AAAR RY + + + + A ++TAH DDQ E Sbjct: 129 QQCQLLQVPISISRVKVNQASGLGIEAAARLLRYQALFDARQALEADFVVTAHHQDDQAE 188 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ ++ R KG+ D + RP L R+ + ++ +Q ++WC+D S Sbjct: 189 TLLLQLFRGSGVKGL-----SSMAAVDHTRSLMRPLLGVSRQSLHAYAIQHALTWCDDES 243 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-- 251 N + R+ER +R V I L Y ++ + L+ + + + ++A Sbjct: 244 NDNTRYERNFIRHDVMPI-LQERYPSVQSVIARTASHLAEASTLLEQLAEIDAQVLVAND 302 Query: 252 --ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGR 306 Q + + LLR A ++ +P + + +L ++ + I Sbjct: 303 SLCLQGLALLSQARAKNLLRWWLA--QHKLVMPTSEHLGEMLQQLLNARADAELSIQIQH 360 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV--WDG--------------------RYQF 344 + R ++ P +++ E T+ DG R + Sbjct: 361 YTLRRYQQRAYLCVVQVCEPFDLVWNGEATLMMPDGGLLTFKQVQGAGLALKFGMTRLRI 420 Query: 345 QNLSDSLIQIGPQSYRK----------ADVPSG----IPPIIAQRALSSMPS-------- 382 N S + P + R A++P +P I Q +L+ +P Sbjct: 421 TNRSGGE-RFKPDAARPTRTLKHLLQAANIPPWQRDHLPLIYWQDSLACVPGVGIAHELK 479 Query: 383 KEGGKPLLA 391 GG+P +A Sbjct: 480 AAGGEPGIA 488 >gi|304387557|ref|ZP_07369746.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091] gi|304338444|gb|EFM04565.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091] Length = 445 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 113/311 (36%), Gaps = 18/311 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +D + R R R + L L ++ F + A+ + + + + + Sbjct: 197 SDTAYLRNRFRHCI----LPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCE 252 Query: 255 DILNIDSTLLFYLLRVSAAIC-----GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + LR I I +P ++ + L K G ++ + Sbjct: 253 EGSFDTMRWQTFSLRRKTHILRHFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFEL 312 Query: 310 DRRANFLWITR 320 A L++ R Sbjct: 313 HHYAGRLFVFR 323 >gi|258627367|ref|ZP_05722151.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603] gi|258580405|gb|EEW05370.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603] Length = 440 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 18/324 (5%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +++A+SGG DS LL L R A+ V H L A Sbjct: 7 HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V+ C I+ + + + AREARY +S+H + TL++ Sbjct: 64 WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ +S Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R + + L + +++ ++ +L+ + L ++ Sbjct: 179 WVTDESNLDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237 Query: 248 SIIAISQDILNIDSTLLFYLLRVS---AAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 I +L R A ++ +P + +++ Sbjct: 238 RAITQDGGLLIPTLAESSEASRRQLIRAWFAHHRLPMPSRQHTDQLWYEVALASEDANPK 297 Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325 + + ++ + R L + + +L Sbjct: 298 LRLNQIEVRRFRQQLHLVQPESDL 321 >gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519] gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii] Length = 464 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 23/313 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + I+ + ILVA+SGG DS+ LL AL + ++ IK A ++H Sbjct: 1 MVIEKIKQTIERENLIENKDKILVALSGGPDSVCLLHALKKL---ETYYNIKIYAAHLNH 57 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 +R A+ + Y + +C L + V V + + L AAR+ RY ++ E Sbjct: 58 KIRGIEAQKDALYAAKLCDELDVPFFVKAIDVPAYAKEKKMTLEEAARKLRYDMLFEVKN 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I A I AH DDQ ETV MR R GL GM Y + RP + + Sbjct: 118 RIGAKKIAVAHNLDDQAETVIMRLIRGTGI--TGLKGMD----YKRGDGVIRPLMDISKA 171 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLR 227 +I S+ + ++ D +N + + R ++R + +K ++ Sbjct: 172 NIVSYCDENKLNPRIDYTNLETEYTRNKIRLKLLPFIEQEFSANIKDTISRMANILREDS 231 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + + + + II + +++ + S+L+ L+R++ G + Sbjct: 232 DYLEAEAQRIFEEQVLENTNEIIKLDIEELKSTHSSLVKRLIRMAIKTLAGTLEGIDNVH 291 Query: 287 MERVMLFLKSGKR 299 +E ++ +K+ K Sbjct: 292 IEDILALIKNSKN 304 >gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123641037|sp|Q493B5|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 510 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 135/325 (41%), Gaps = 24/325 (7%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETA 66 R LV ++++ SGG DS LL L + ++ AI V H + + Sbjct: 15 RKVTHCLVGHTRLVLSYSGGLDSTVLLDILTRLKNNSDHFTSSPFMLRAIYVHHGISNYS 74 Query: 67 KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + + C I SV+ + Q + A AR RY + + + +++ Sbjct: 75 DEWASHCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKLYN--RLNSKEILL 132 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH +DQ+E++++ +R GLSGM LY + RP L C RE + + + Sbjct: 133 TAHHMNDQVESLFLALKRGSGP--SGLSGMSKNALYANKYRLLRPLLDCSREQLEMYAYK 190 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPK 240 + + W ED +NTD RF+R +R + L ++Y + F + ++ L+ + Sbjct: 191 KKLVWIEDDTNTDTRFDRNFLRIKI----LPSIYQRWPCFNQVVARTAQLCRDQENLLNE 246 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVM---LF 293 L+ + +I S L + + + A + + +P Y+ + R+ + Sbjct: 247 LLSESFQKLIDESDGSLLFIPLFQYSIPKRQALLRRWLLHFSMKMPSYQLINRIWKEVVL 306 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWI 318 + + + + + R L+I Sbjct: 307 SRKDATPILQLDKYLCRRFREKLYI 331 >gi|312792833|ref|YP_004025756.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179973|gb|ADQ40143.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 456 Score = 229 bits (585), Expect = 6e-58, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 136/339 (40%), Gaps = 28/339 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL + + + S + + ++ Sbjct: 1 MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLNCICRLKDEYS---LDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A D+ ++V ++C R I +K A R ARY+ E A+ Sbjct: 58 HMLRPEADDDEKFVIEICKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAE 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +N I+ H +D +ET ++ R +G+ + + I+RP + RE Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIIARPLINISRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227 +I F NI + D +N +++R VR + + L+ ++ ++ ++ Sbjct: 171 EIEEFARVNNIPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + + + N+ L ++++ IS + + Sbjct: 231 DQIEELAQKSFEECVQKEDIYYVLNIEKTKNLPVFLRRRIIKMILEYFNAPISYDILKEI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 E + L SGK+ + +V++R+ + L R P Sbjct: 291 EEL-ASLSSGKKKVYN--ELVVERQNDELVFYRKSEESP 326 >gi|331007449|ref|ZP_08330624.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989] gi|330418742|gb|EGG93233.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989] Length = 483 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +++A SGG DS LL A+ F A+ V+H L + A ++ Sbjct: 37 KRLVIAYSGGVDSTVLLHAVVEAAKQGLIPFSLSSIVAVHVNHQLSDQADCWQQHCQQSA 96 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L IA + + G+ AAAR+ARY++ + ++ H DQ ETV + Sbjct: 97 ESLGIACFSEAVRVESTGKGVEAAARDARYSVFEGFLQP--GDCLLLGHHQGDQAETVLL 154 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R KG+ + + + RP L + I+++ Q ++W ED SN D Sbjct: 155 RLFRGAGVKGLTAMPVSRAMGKAS---LLRPLLAVNQAAIQAYARQHQLTWVEDESNQSD 211 Query: 198 RFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 ++R +R V + L + + +++ + + R+ Sbjct: 212 HYDRNFLRNKVMPLMTQRWSSVEPQLSKTAETMVETNTLLSDIAEDDLQQLDHQQARTGY 271 Query: 251 AISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVML--FLKSG--KRGCVSIG 305 ++ LN S LLR LP + M ++ F +S CVS G Sbjct: 272 SVDFTALNQLSLPRKKNLLRYWCEKL--NYDLPDSQQMIQIEQQFFSRSALLSSACVSWG 329 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS-----YR 360 R + + + L++ A LP I WDG ++++ + Sbjct: 330 RYELRQFSGRLYLMEA---LPKFISPL--AIQWDGASDIDLQGAGVLRVVNKEAVVENTS 384 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 + +P I +A + G P R Sbjct: 385 EKAREKTMPKGIHIKAQAYQIRWRQGGERCTPADR 419 >gi|27365224|ref|NP_760752.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6] gi|61217354|sp|Q8DBE4|TILS_VIBVU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27361371|gb|AAO10279.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6] Length = 436 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 26/317 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ++VA SGG DS LL H + + A+ V H L A V+ Sbjct: 14 QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + C I +V + Q + AR ARY + H L++T DDQ+ Sbjct: 71 AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + + RP L RR++I + W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLHWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R+ + L AL + F + L+ + L + Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241 Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301 Q + F LLR+ A G +P + + + ++ Sbjct: 242 FGEDQSLAITLLSQQSELARFKLLRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299 Query: 302 VSIGRVVIDRRANFLWI 318 + + + + R L++ Sbjct: 300 LQLSQGQVRRFNQRLYL 316 >gi|254496251|ref|ZP_05109145.1| cell cycle protein MesJ [Legionella drancourtii LLAP12] gi|254354556|gb|EET13197.1| cell cycle protein MesJ [Legionella drancourtii LLAP12] Length = 443 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 24/324 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V SGG DS LL AL + S R+ K A+ ++H + A ++ + C Sbjct: 21 GKLIVGFSGGLDSTVLLHALAAQPSLRT----KLVAVHINHGISSNASSWQQHCAQCCHD 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I S + + + AR ARYA+ + T + ++ H DDQ ETV ++ Sbjct: 77 LGIQFITESVQFDR-SANIEEHARIARYAIFASLLTTKDC--LILGHHQDDQAETVLLQL 133 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ + + + RPFL R + + + W ED SN + + Sbjct: 134 FRGAGIDGLAAMT---AVSHLGAGTLVRPFLTYSRLQLAHYATVHQLIWIEDESNQEITY 190 Query: 200 ERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R +R+ + + + + Q + ++ I + + ++ Sbjct: 191 SRNYLRQQIMPLLVEKWPGVVGTIARSALHCQQAKSNLDALATQDIEGGSELITLTSTSL 250 Query: 253 SQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 D +LN++ + +LRV + Q+ LP + R+ +L+ ++ VS G ++ Sbjct: 251 CIDPLLNLNFARIANILRVW--LRNNQVQLPSTATFHRLINELLYARTDAAPAVSWGDIL 308 Query: 309 IDRRANFLWITRAVRN-LPTLILY 331 I R +L++ R LP ++ Sbjct: 309 IRRYQKYLYLDRKTSATLPACSVW 332 >gi|320155609|ref|YP_004187988.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O] gi|319930921|gb|ADV85785.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O] Length = 436 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 26/317 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ++VA SGG DS LL H + + A+ V H L A V+ Sbjct: 14 QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + C I +V + Q + AR ARY + H L++T DDQ+ Sbjct: 71 AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + + RP L RR++I + W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLHWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R+ + L AL + F + L+ + L + Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241 Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301 Q + F LLR+ A G +P + + + ++ Sbjct: 242 FGEDQSLAITLLSQQSELARFKLLRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299 Query: 302 VSIGRVVIDRRANFLWI 318 + + + + R L++ Sbjct: 300 LQLSQGQVRRFNQRLYL 316 >gi|261211361|ref|ZP_05925649.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341] gi|260839316|gb|EEX65942.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341] Length = 440 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 151/382 (39%), Gaps = 25/382 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +L+A+SGG DS LL L R +A+ V H L A Sbjct: 7 HFVQQLARHPFRKLLLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ C + +A + + + AREARY +S+H + TL++ Sbjct: 64 WAQHCQLCCREVGMACQIEYVQLDLASGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG L+ M + + RP L R+ I ++ Q ++ Sbjct: 122 ADDQLETFLLALKRGSGPKG--LAAMAAYSPFAEG-HLLRPLLTVSRQHIEAYAKQHKLT 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 W D SN D R+ER +R V + +++ +++ +L + + L+ + L Sbjct: 179 WVTDESNADTRYERNFLRHQVTPVLAERWPSIHQAVQRSAELCAEQEALLQELLAEALKR 238 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 + + + L S ++ L + A ++ +P + ER+ Sbjct: 239 AISAEGGLVISALVESSDVMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPK 297 Query: 302 VSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG-PQ 357 + + + + R L++ +A+ ++++ + + G Q S + I P Sbjct: 298 LKLNSIEVRRFQQCLYLVPPEKALSGWCSVLVLEQRLPLPQGLGHLQLTSKAGGNIKLPD 357 Query: 358 SYRKADV---PSGIPPIIAQRA 376 + V P G+ R+ Sbjct: 358 DPSQLWVSFEPQGLEACPVGRS 379 >gi|254493722|ref|ZP_05106893.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291] gi|268598934|ref|ZP_06133101.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11] gi|268603613|ref|ZP_06137780.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|268682089|ref|ZP_06148951.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332] gi|268684299|ref|ZP_06151161.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|268686557|ref|ZP_06153419.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|293399092|ref|ZP_06643257.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62] gi|226512762|gb|EEH62107.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291] gi|268583065|gb|EEZ47741.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11] gi|268587744|gb|EEZ52420.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|268622373|gb|EEZ54773.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332] gi|268624583|gb|EEZ56983.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|268626841|gb|EEZ59241.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035] gi|291610506|gb|EFF39616.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62] Length = 436 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 248 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305 Query: 312 RANFLWITRAVRNLPTLILYPEE 334 A L++ + + L Sbjct: 306 YAGRLFVFASEQLAKPAFLKDGT 328 >gi|325981478|ref|YP_004293880.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212] gi|325530997|gb|ADZ25718.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212] Length = 450 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 30/344 (8%) Query: 9 VRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 VR + + + P H+ VA+SGG DS+ LL AL S+ + + SA+ ++H + A Sbjct: 16 VRNTLLAHIKPGDHLAVALSGGVDSVVLLHALASLSRE---IPLTLSAVHINHGISSNAT 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ +C I+ + K K L A ARE RY + S+ +A ++ A Sbjct: 73 LWSKFCCHLCHSYGISIYIAYLKIKKETGESLEAKAREERYRVFSQI----HANYVVLAQ 128 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ET+ ++ R KG+ + I RP L R++I S+ + Sbjct: 129 HLDDQAETLLLQLLRGAGIKGLCGMPPVRKLSSPAIPQILRPLLEISRDEIESYGRLNKL 188 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIP 239 +W +D SN F R +R + I L + F + ++ AM Sbjct: 189 NWIKDESNDSIIFNRNFLRHEILPILKKRYPNYPKTLLRTSRHFSEASSLLDELAAMDNE 248 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--- 296 + I +I LL Y + I+LP +E ++ + S Sbjct: 249 NCMVSGKIQISSIRMLSFARAKNLLRY------NLAQRDITLPSTVKLETILHQIMSAGP 302 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 C+S G I ++I +L + Y +W+G Sbjct: 303 DSHPCISFGNTEIRCHKGSIYILSNKASLSSSARY-----IWNG 341 >gi|237747645|ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] gi|229379007|gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13] Length = 473 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 156/399 (39%), Gaps = 29/399 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 SV F ++ + A I +A SGG DS LL H + A V H L A Sbjct: 29 ASVSFSLKESLKNARIAIAYSGGLDSSVLLHLAHRFAIE---NDCALFAFHVHHGLNPHA 85 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D + + + C RL ++ + + + G+ A ARE RY + E + + L++TA Sbjct: 86 DDWLAHCENECIRLGVSFDSQRVQIDPQSGDGIEAEAREKRYRALGEMCRKHDIPLLLTA 145 Query: 126 HTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 H DDQ+ETV ++ R G+ S +L D L++ RP L R+++ S+L+ Sbjct: 146 HHEDDQVETVLLQLMRGTGVAGLSGMEASSHSPELLGDETLFLGRPLLSVSRKELASWLV 205 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + I+ +D SN D + R +R + + L L+ +K + + L+ + Sbjct: 206 EAGITHIDDDSNDDVAYTRNAIRHRLVPV-LEDLFPGFQKRLFRTAQHAGSARRLLEEVA 264 Query: 243 TVHMRSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294 + + + + ++ + LLR A ++ +P + + +L Sbjct: 265 KKDFEACTSGKNSLNLEQLRLLNRERIDNLLRYWLA--ASRVRMPSTAWLVQAREQLLEA 322 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR--AVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 + + + + I R + + R L + + R++ +L Sbjct: 323 REDAQIDLILDGYTIRRYRQNISLGRTVESTGNQPHPLEIQWHG--ENRFRLHQWHGTLY 380 Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 ++ D + +R L P + K LA Sbjct: 381 FEESETGFDIDW-------LQRRKLRIEPYRGSAKLKLA 412 >gi|59801231|ref|YP_207943.1| hypothetical protein NGO0820 [Neisseria gonorrhoeae FA 1090] gi|75432494|sp|Q5F8F6|TILS_NEIG1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|59718126|gb|AAW89531.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] Length = 426 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 7 QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 63 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 64 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 177 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 238 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295 Query: 312 RANFLWITRAVRNLPTLILYPEE 334 A L++ + + L Sbjct: 296 YAGRLFVFASEQLAKPAFLKDGT 318 >gi|309379968|emb|CBX21379.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 411 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 111/302 (36%), Gaps = 14/302 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DS+ LL L F A+ + H L A D + + C L + Sbjct: 2 ALSGGLDSVVLLQLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQNYCDMLGVRL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V K G+ AAAR+ RYA + ++ AH DDQ+ET + R Sbjct: 59 ETVKVCVEKNGLGIEAAARQKRYATFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 + LS M N I RP L R+DI + + + ED SNTD + R R Sbjct: 115 LR--ALSAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRF 172 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261 R + + + + + +A+L + + + L Sbjct: 173 RHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSP 232 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++LR + + +P ++ + L K G ++ + A L++ R Sbjct: 233 RRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHYYAGRLFVFRP 290 Query: 322 VR 323 + Sbjct: 291 EK 292 >gi|194098553|ref|YP_002001615.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945] gi|193933843|gb|ACF29667.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945] gi|317164226|gb|ADV07767.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae TCDC-NG08107] Length = 445 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F A+ + H L A D + Sbjct: 26 QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 82 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 83 NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M N I RP L R+DI + + + ED SN Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 196 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251 TD + R R R + + + + + +A+L + + Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L ++LR + I +P ++ + L K G ++ + Sbjct: 257 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314 Query: 312 RANFLWITRAVRNLPTLILYPEE 334 A L++ + + L Sbjct: 315 YAGRLFVFASEQLAKPAFLKDGT 337 >gi|313639795|gb|EFS04533.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171] Length = 648 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 18/292 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L K S ++H LRE A E V + C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I + K Q G+ AR ARY + N ++ AH DDQ+E Sbjct: 77 EKHEIPFFIEEVNVKKRAKTMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SGM I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSSS--IGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 N+ ++ R R R+ + + A+Y ++F + + + + + L+ K L + Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPAIYAHFERFSEETSEDFQYLEDLASDLLKKNLVKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSG 297 + N + L + + + SL + +++ ++S Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDASLITATHIYQIIQMIQSD 305 >gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT 5713] Length = 456 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%) Query: 13 VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 +R L + +L+AVS G DSM LL + + ++ + +DH LRE +K+E + Sbjct: 16 LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINVAYIDHQLREQSKEETK 72 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + C I V W K P + AAARE RY + K N ++TAH DD Sbjct: 73 FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET M+ R + L + ++ + I RP L +++I + Q I + E Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247 D +N D ++R R+R + + +K ++ N A+ + L + Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + LL + G +I +++++ L K+ I Sbjct: 251 EETLDYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDEKKPQAKI 304 >gi|261400234|ref|ZP_05986359.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970] gi|269210035|gb|EEZ76490.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970] Length = 411 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 109/297 (36%), Gaps = 14/297 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DS+ LL L F A+ + H L A D + + C L + Sbjct: 2 ALSGGLDSVVLLHLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQNYCDMLGVRL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V K G+ AAAR+ RYA + ++ AH DDQ+ET + R Sbjct: 59 ETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRF 172 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261 R + + + + + +A+L + + + L Sbjct: 173 RHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSP 232 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 ++LR + + +P ++ + L K G ++ + A L++ Sbjct: 233 RRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHHYAGRLFV 287 >gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1] gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magneticum AMB-1] Length = 443 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 160/385 (41%), Gaps = 20/385 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS+ L + R + A++VDH LR + E V +R Sbjct: 26 RLAVAVSGGADSLALALLAADWAKARGG---EVLALTVDHRLRPESAAEAARVGAWLARD 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I+H +++W+ KP L AAAR ARY L+ E + AH DDQ ET+ +R Sbjct: 83 GISHRILAWEGDKPAADLQAAARAARYGLLGEACAAEGILHLALAHHQDDQAETLLLRLG 142 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+G + + RP L R + + L R W DPSN + F Sbjct: 143 RGSGLEGLGAMAAERPTSWGR---LLRPLLPVPRVRLEATLRHRGQEWTSDPSNRNPAFA 199 Query: 201 RVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RVR+R D+ + + + + V++ VA +++T+ + + Sbjct: 200 RVRLRHLAGDLAAEGMTPRRLAETAGRLARAQAAVDSMVAEAAARHVTLDPAGFGRLRPE 259 Query: 256 ILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 L + + LL GG+ P +ER+ L G ++ I + + Sbjct: 260 ALAGLPDEVGLRLLAGLLLSVGGEAHTPRLERLERLHATLCGGLEAARTLAGCRIVPQGD 319 Query: 315 FLWITRA-VRNLPTLILYPEETTVWDGRYQFQNLSDSL-----IQIGPQSYRKADVPSG- 367 + + R R P L L P WDGR++ D+ +GP+ RK G Sbjct: 320 SVVLCREPARVAPPLDLVPGSRIRWDGRFEAVVAGDAPPGLRLGALGPEGRRKVLAAMGR 379 Query: 368 -IPPIIAQRALSSMPSKEGGKPLLA 391 P + A+ ++P+ + +LA Sbjct: 380 QRPEPVPTCAIPTLPALYHERGILA 404 >gi|295698551|ref|YP_003603206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia pediculicola USDA] gi|291157496|gb|ADD79941.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia pediculicola USDA] Length = 454 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 21/345 (6%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 P ++ +SL +LV SGG DS LL L ++ + KI AI ++H L+ Sbjct: 7 EPYNLLKLISKSLNPFKKVLVGFSGGMDSTVLLHILMTLRKLKKI-KIDLRAIHINHHLQ 65 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + + +C +I+ K S + G+ + +R RY + + +IM Sbjct: 66 KESNLWESHCKKICDLWKISFLSKRVKISSKKYGVESESRAIRYREMRNVLRPK--EVIM 123 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ ET + +R G+ T +D N I RP L + ++ + + Sbjct: 124 TAHHIDDQAETFLLALKRGSGPSGLSSMKFI-TSFHDKN--IVRPLLSFEKTQLKKYAEE 180 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 +SW ED SN D F+R +R V I L+ + K K+ LI + + Sbjct: 181 NRLSWIEDQSNFQDLFDRNFLRIHVLSI-LNRRWPYFSKAISNSAKLCEDQENLIEELIK 239 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG----GQISLPGYRSMERVM---LFLKS 296 H + L I L F ++ + + + P ++ + + Sbjct: 240 PHFLRLFNQRDSSLKIKELLTFSKIKRNVILRNWFKVNHLPNPSRIQLKVLWNNVIRANP 299 Query: 297 GKRGCVSIGRV-VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 + + + + VI + + L+ + + + VW Sbjct: 300 NSQPELVVFKKYVIRKFRSRLFCFQKFKEINE------SRIVWKN 338 >gi|261377822|ref|ZP_05982395.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685] gi|269146124|gb|EEZ72542.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685] Length = 457 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 119/320 (37%), Gaps = 24/320 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + +R + I VA+SGG DS+ LL L F A+ + H L A Sbjct: 30 QQLRNCFPQGLDGQKIAVALSGGLDSVVLLHLLVCAGKKGGFIP---EALHIHHGLSPHA 86 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + C L + V K G+ AAAR+ RYA+ S ++ AH Sbjct: 87 DSWADFCRNYCDTLGVRLETVRVSVEKNGLGIEAAARQKRYAVFS----EKEFDILALAH 142 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET + R + LS M I RP L R++++ + + + Sbjct: 143 HRDDQIETFMLAVARGGGLR--ALSSMPSVRPLGTRGIIWRPLLPFSRQELQDYAERHGL 200 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLI 238 S ED SNTD + R R L L ++ F L+ ++ +++ Sbjct: 201 SNIEDESNTDTGYLRNWFRHR----ALPELSARIPDFDRHVLNNIRVLQEDLSLLDEVVV 256 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 Y V ++ L ++LR + + LP ++ + L K Sbjct: 257 QDYRFVCGAGGFDTARW-LTFSPRRRSHILRYF--LKENAVPLPNQNALADIARVLAEAK 313 Query: 299 RGCVSIGRVVIDRRANFLWI 318 G S+ + A L++ Sbjct: 314 TGRWSLQGFELHHYAGRLFV 333 >gi|313635123|gb|EFS01457.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067] Length = 648 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 18/292 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L K S ++H LRE A E V + C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I + K Q G+ AR ARY + N ++ AH DDQ+E Sbjct: 77 EKHEIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SGM I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSSS--IGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 N+ ++ R R R+ + + A+Y ++F + + + + + L+ K L + Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPAVYAHFERFSEETSEDFQYLEDLASDLLKKNLVKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSG 297 + N + L + + + SL + +++ ++S Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDASLITATHIYQIIQMIQSD 305 >gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans] gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Herminiimonas arsenicoxydans] Length = 465 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 17/330 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +A SGG DS LL L + + ++ A V H L A + + C+ L Sbjct: 33 KIAIAYSGGLDSAALLYLLRAYATQHG---LELFAFHVHHGLSLNADQWLAHCQQQCAGL 89 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A + ++ ++G+ AAR +RYA + E + + L++TAH DDQ ETV ++ Sbjct: 90 GVAFDARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQL 149 Query: 140 QRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ +L D L + RP L+ R D+ + I++ ED SN D Sbjct: 150 LRGSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESNLD 209 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAIS 253 R+ R +R V ++F +A +LI + LTV + Sbjct: 210 PRYARNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAAQDLTVCLDGDCLDI 269 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310 + + + +LR G + +P + + +L K + CV+ I Sbjct: 270 TKLRQFSTDRIDSMLRYWFGSRG--VRMPSTSWLNEMRTQLLEAKHDAQLCVTHADCHIR 327 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDG 340 R + +++T + P + WDG Sbjct: 328 RHRDRVYLTPKLD--PASLEQAPLAFRWDG 355 >gi|187251952|ref|YP_001876434.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191] gi|186972112|gb|ACC99097.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191] Length = 241 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 13/228 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 FF R +LV VSGG+DS+ LL L + + F + A ++H LRE AK + Sbjct: 21 FFKR----GDKVLVGVSGGADSVCLLHFLTQLAQKKRF---RVYACHINHSLRENAKKDE 73 Query: 71 RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +C +L + V++ K + + AAR+ARY+ AK INA + AH Sbjct: 74 LFTKKLCEQLGVELFVITKDVKNIALKNKLSIEHAARKARYSAFESAAKKINAGYLALAH 133 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +ET ++ R KG L+G+ + N I RP L RR+D+ +++ + Sbjct: 134 HLDDNVETFFLNILRGTKAKG--LTGIPRVRPLNKNTVIIRPLLNIRRQDVINYVKFNKL 191 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + D +N+D+++ R VR + + + + + Sbjct: 192 KFITDETNSDEKYTRNWVRNKLLPMVEKKQPQIREHILLISKDLEKEC 239 >gi|149907536|ref|ZP_01896283.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36] gi|149809206|gb|EDM69135.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36] Length = 474 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 128/339 (37%), Gaps = 19/339 (5%) Query: 8 SVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + ++SL P I++A SGG DS LL L + + + A+ V H L + A Sbjct: 13 TFQHALQSLTTKPMQIVLAYSGGLDSHVLLHLLARYQQ--RYPQHAYLAVHVHHGLSDNA 70 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + L I N + L A AR ARY I++H + +L++ Sbjct: 71 DTWLDHCQQTAAALGINFIAEKVVLNVGSRESLEAQARTARYQAIAKHL--NDGSLLLLG 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQLET ++ +R KG+ N I RP L ++ + + Q Sbjct: 129 QHLDDQLETFLLQLKRGAGVKGLSAMAAQMPFSLQANCQIVRPLLIHPQQALVDYASQAQ 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM--LIPKYLT 243 +SW ED SN + ++R +R + + +L + + A + + Sbjct: 189 LSWVEDESNNNQSYDRNFLRHQI----IPSLKQRWPGIAHAVHRSAELCAEQQALSDEIA 244 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERVML---FLKS 296 A S LNI +R + + G Q+ +P +++V L Sbjct: 245 EIDLVTCAHSFSGLNIAELDKLSKIRRNNVIRFWLAGQQLPMPSRHHLDKVWLEVVNAAD 304 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 +S R L+ + L +++ E T Sbjct: 305 DANPQLSWQAGEFRRYQGVLYNQQKYAELKDVVITLEHT 343 >gi|120599536|ref|YP_964110.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1] gi|120559629|gb|ABM25556.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1] Length = 465 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 22/340 (6%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQHGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ + + + P+ + A AR RY I +H + L++TA Sbjct: 68 DAWAQHCITRGQHYGLPTIIEHVQVKLGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLET+ + +R KG+ G ++ + RP L RE I ++ Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + ED SN DD+++R +R + L A + + + +I +++ Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241 Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294 + + + Q + N++ T + L + I ++LP + + ++ +L Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGVALPSFVQLNQIIHQLLNA 301 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 K + + +G + R AN L++ +++ + Y ++ Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341 >gi|262166320|ref|ZP_06034057.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223] gi|262026036|gb|EEY44704.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223] Length = 440 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 22/319 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +++A+SGG DS LL L R A+ V H L A Sbjct: 7 HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + C I+ + + + AREARY +S+H + TL++ Sbjct: 64 WAQDCQTWCQAANISCQIERVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG+ ++RP L R+DI ++ +Q+ +S Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYGPFA---QGHLARPLLTVSRQDIEAYAMQKKLS 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R + + L + +++ ++ +L+ + L ++ Sbjct: 179 WVTDESNFDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237 Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + L+R A ++ +P + +++ Sbjct: 238 RAITEDGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWHEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWI 318 + + ++ + R L + Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314 >gi|37680722|ref|NP_935331.1| cell cycle protein MesJ [Vibrio vulnificus YJ016] gi|61217308|sp|Q7MIH8|TILS_VIBVY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|37199471|dbj|BAC95302.1| cell cycle protein MesJ [Vibrio vulnificus YJ016] Length = 436 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 117/317 (36%), Gaps = 26/317 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ++VA SGG DS LL H + + A+ V H L A V+ Sbjct: 14 QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + C I +V + Q + AR ARY + H L++T DDQ+ Sbjct: 71 AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M + + + RP L RR++I ++W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLNWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R+ + L AL + F + L+ + L + Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241 Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301 Q + F L R+ A G +P + + + ++ Sbjct: 242 FGEDQSLAITLLSQQSELARFKLFRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299 Query: 302 VSIGRVVIDRRANFLWI 318 + + + + R L++ Sbjct: 300 LQLSQGQVRRFNQRLYL 316 >gi|297250385|ref|ZP_06864202.2| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768] gi|296839058|gb|EFH22996.1| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768] Length = 436 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 18/309 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + VA+SGG DS+ LL L F + + H L A + Sbjct: 17 QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIPKT---VHIHHGLSPRADAWADFCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + C L + V K G+ AAAR+ RYA + ++ AH DDQ+ET Sbjct: 74 NYCDMLGVELETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L+ M + N I RP L R+DI + + + ED SN Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 +D + R R R + L L ++ F + A+ + + + + + Sbjct: 188 SDTAYLRNRFRHRI----LPELSAQIPHFGRHVLNNVRALQEDLALLDEIISQDCRWVCE 243 Query: 255 DILNIDSTLLFYLLRVSAAIC-----GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + LR I I +P ++ + L K G ++ + Sbjct: 244 EGSFDTVRWQTFSLRRKTHILRHFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFEL 303 Query: 310 DRRANFLWI 318 A L++ Sbjct: 304 HHYAGRLFV 312 >gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 484 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 170/399 (42%), Gaps = 21/399 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R S+ +++AVSGG DSM L+ + S + +VDH LR + + Sbjct: 43 IRKAFASVEASPALVLAVSGGPDSMALMHLARRWATLASRQAATITVATVDHGLRPESAE 102 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V L H + W KP GL AAAR ARYAL++ A+ A+ ++TAHT Sbjct: 103 EATFVKAHARALGFEHVTLVWSGEKPSAGLQAAARRARYALLTAQARVNGAS-LLTAHTR 161 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ MR R G+ + + + RP L + + ++L R++ + Sbjct: 162 DDQAETLIMRLSRGSGVDGLSA---IAPVSGRDGVRLVRPLLGFSKTRLTAYLRARHVPF 218 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLT 243 DPSN + FERVR+R ++ + + L + R ++ A + + Sbjct: 219 VRDPSNENTAFERVRLRLAMKALANAGVSKAALALSAARLGRSRAALDEAAERFLDGFFR 278 Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 V + I ++ + + + +L + GG+ P +ER++ L+S + Sbjct: 279 VSPLAHGEIDREAFDALPDEIALRVLARVLPLVGGRAEPPRMMRLERLLENLRS-RNSEA 337 Query: 303 SIGRVVIDRRANFLWITRAVRNL--PTLILYPEETTVWDGRYQFQNLSDS--------LI 352 ++G ++ A L R + L L P +WD R+ + + L Sbjct: 338 TLGGSLMIAAAGRLSFYREPGRMKPEPLFLEPRVAVLWDRRFLVSAPTAAACEGQVRPLG 397 Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + G ++RK G+ + A + P+ LLA Sbjct: 398 EPGWTAWRKERKQLGLSAEANRLAALATPALWRVDKLLA 436 >gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM 574] gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM 574] Length = 475 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 26/314 (8%) Query: 6 IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E VR + +V P ++V VSGG DS+ LL L+ + R I ++H Sbjct: 4 LEKVRAEIIRHKMVQPGDLVVVGVSGGPDSVALLHVLYCL---RDELGISLHVAHLNHMF 60 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E A+++ +V D+ ++L I +V V K AAREARY + + Sbjct: 61 RGEEAEEDASFVQDLAAKLGIPCTVEERDVPAYARKNHLSSEVAAREARYRFFRDVLQAT 120 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + + AH DDQ E V M R G GL G+ ++I RP L RR+DI Sbjct: 121 GGSKLALAHHADDQAELVLMNILR-----GTGLKGLSGMWPVRDQVYI-RPMLEVRRKDI 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVK 229 + N+S+ D SN + + R R+R+ + + + K+ +D + Sbjct: 175 EQYCHDHNLSFRIDSSNLKNIYLRNRIRQQLIPWLEKEYCPGLVPIISRMTKQIRDEEMF 234 Query: 230 VNN-AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + + AV L+ H +++ Q +L + + +LRV+ G + +E Sbjct: 235 LESLAVQAYSQVVLSEHPAAVVLHRQKLLAQPTVMARRVLRVAWGRLRGNKQDLTFDHVE 294 Query: 289 RVMLFLKSGKRGCV 302 ++ LK G + Sbjct: 295 NLINHLKGGGPERI 308 >gi|168218232|ref|ZP_02643857.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239] gi|182379755|gb|EDT77234.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239] Length = 469 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ + +LVA+SGG DS+ LL L + R I+ A V+HCLR Sbjct: 3 KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59 Query: 64 ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + YV ++C L I V +K A RE RY E + Sbjct: 60 GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ MR+ R +G L G+ + RP L RR++I Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N++ D +N ++ + R ++R F+ + + + + K + Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233 Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + K L + I I ++ N LL +++ + + + + ++ ++ Sbjct: 234 QEEVEKRFPKLCIKENHNILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293 Query: 292 LFLKSGKRGCVSIGRVVI 309 G ++I VI Sbjct: 294 ALKDKGTGKQINITNGVI 311 >gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330] gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12] gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330] gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12] Length = 481 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L F + ++H LRE + +E Y+ Sbjct: 28 QKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYLRSY 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + V W+N +T + AAR RY + + +MTAH DDQ+ETV Sbjct: 85 CEKKNLPLYVSVWENPA-KTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + RP L +E++ ++ + + + ED +N Sbjct: 144 MKIIRGGQL--STFSGIKGVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQTNQL 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V M+ FQ ++ +I K + + + +D Sbjct: 201 LDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQLKDR 259 Query: 257 LNIDSTLL 264 + ++ Sbjct: 260 FQFSAEMI 267 >gi|312623036|ref|YP_004024649.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312203503|gb|ADQ46830.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 456 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 137/335 (40%), Gaps = 28/335 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL +L + + + ++ Sbjct: 1 MEFLEKVKSNIEKYGMLEEGFKVLIGCSGGVDSMVLLDC---ILRLKDKYNLDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A D+ ++V ++C R I +K A R ARY+ E A+ Sbjct: 58 HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRNARYSFFYEVAE 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +N I+ H +D +ET ++ R +G+ + + I+RP + RE Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIIARPLINISRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227 +I + ++ + D +N +++R VR + + L+ ++ ++ ++ Sbjct: 171 EIEEYAKLNSVPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ +Y+ + + N+ + L ++++ IS R + Sbjct: 231 DQIEALAQKYFQEYVQKEDVYYVLNIEKAKNLPAFLRRRIIKIMLEYFNSTISYDMLREI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 E + FL SGK+ +V++++++ L R Sbjct: 291 EDLF-FLLSGKKKVYK--DLVVEKQSDSLVFYRKA 322 >gi|262404577|ref|ZP_06081132.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586] gi|262349609|gb|EEY98747.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586] Length = 440 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 20/318 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +++A+SGG DS LL L R A+ V H L A Sbjct: 7 HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V+ C I+ + + + AREARY +S++ + TL++ Sbjct: 64 WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQYVDS--DTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ +S Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYTPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R + I L +L +++ ++ +L+ + L ++ Sbjct: 179 WVTDESNFDTRYERNFLRHHITPI-LTERWLSIRQAVQRSAELCAEQEVLLQELLADALK 237 Query: 248 SIIAISQDI----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300 I + L S L + A ++ +P + +++ Sbjct: 238 RAITQDGGLSISTLAESSEASRRQL-IRAWFAHHRLPMPSRQHTDQLWHEVALASEDANP 296 Query: 301 CVSIGRVVIDRRANFLWI 318 + + ++ + R L + Sbjct: 297 KLRLNQIEVRRFRQQLHL 314 >gi|146292467|ref|YP_001182891.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32] gi|145564157|gb|ABP75092.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32] Length = 465 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 22/340 (6%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + +G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ + + + + P+ + A AR RY I +H + L++TA Sbjct: 68 DAWAQHCITRGQHYGLPTIIEHVQVKQGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLET+ + +R KG+ G ++ + RP L RE I ++ Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + ED SN DD+++R +R + L A + + + +I +++ Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241 Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294 + + + Q + N++ T + L + I +LP + + ++ +L Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGFALPSFVQLNQIIHQLLNA 301 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 K + + +G + R AN L++ +++ + Y ++ Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341 >gi|18311454|ref|NP_563388.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens str. 13] gi|61216685|sp|Q8XHL1|TILS_CLOPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|18146138|dbj|BAB82178.1| probable cell-cycle protein [Clostridium perfringens str. 13] Length = 469 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ + +LVA+SGG DS+ LL L + R I+ A V+HCLR Sbjct: 3 KKVIDFIKENSMIKSGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59 Query: 64 ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + YV ++C L I V +K A RE RY E + Sbjct: 60 GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ MR+ R +G L G+ + RP L RR++I Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N++ D +N ++ + R ++R F+ D + + + K + Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEDNFNPDIVATLNRLAYSCSKDVEFI 233 Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + K L + I I ++ N LL +++ + + + + ++ ++ Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293 Query: 292 LFLKSGKRGCVSIGRVVI 309 G ++I VI Sbjct: 294 ALKDKGTGKQINITNGVI 311 >gi|145636327|ref|ZP_01791996.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH] gi|145270492|gb|EDK10426.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH] Length = 301 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 12/245 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 L+A+SGG DS LL + + +I AI + H L A ++ ++C + + Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQNLCDQFQ 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I + + K G+ A AREARY I +H +T +++TAH +DQ ET ++ +R Sbjct: 80 IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EVLVTAHHLNDQTETFFLALKR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+G + + I RP L R + + + ++W D SN D+RF+R Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFDR 193 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 +R + L L + F DL V+ + + + + A I N Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248 Query: 262 TLLFY 266 L F Sbjct: 249 LLQFR 253 >gi|149192143|ref|ZP_01870364.1| cell cycle protein MesJ [Vibrio shilonii AK1] gi|148834013|gb|EDL51029.1| cell cycle protein MesJ [Vibrio shilonii AK1] Length = 437 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 140/386 (36%), Gaps = 21/386 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 V I+V SGG DS LL S I A+ V H L + A + Sbjct: 14 QKVMHGKIIVGFSGGVDSRVLLRLAARYSKQHS---ITCLAVHVHHGLSDNANEWQVQCE 70 Query: 75 DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + S+ L AR+ARY + +H ++ +++T DDQ E Sbjct: 71 RWAQEEAVEFTCERVTLSQDSGESLEQLARQARYQALRQHMQS--GDILLTGQHLDDQAE 128 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + +R KG LS M ++ + + RP L R DI + + W ED S Sbjct: 129 TMLLALKRGSGPKG--LSSMASSMNFGSG-RLVRPLLNIARHDIERYAQHEQLQWVEDES 185 Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N+D RF+R +R+ V + + + + L K + L+ L V M Sbjct: 186 NSDTRFDRNFLRQSVLPVLNQRWPSFAKAVSRSARLCAKQERLIKELLLPELEVCMNEFQ 245 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRV 307 +S ++ S L L + +P +R + + + K +++ Sbjct: 246 GLSISTMSSHSILKREQLLR-LWLEANTSLMPTEVQFRKIWQEVALAKQDANPEMNLAGG 304 Query: 308 VIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 I R L+ + V + L + + D + +S S + + + + Sbjct: 305 AIRRAQGHLYWVEAYKGVSDWQQSWLDKDTLVLPDNLGVLKLVSPS--KDAKMTLDRQTL 362 Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLL 390 + I LS+ P G L Sbjct: 363 NRSLKVIFNPEGLSAHPHGRAGSRKL 388 >gi|319425769|gb|ADV53843.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens 200] Length = 465 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 22/340 (6%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V F+ SL A +++A SGG DS L L + +G++++ + V H L + A Sbjct: 10 VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ + + + P+ + A AR RY I +H + L++TA Sbjct: 68 DAWAQHCITRGQHYGLPTIIEHVQVKLGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLET+ + +R KG+ G ++ + RP L RE I ++ Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + ED SN DD+++R +R + L A + + + +I +++ Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241 Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294 + + + Q + N++ T + L + I +LP + + ++ +L Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGFALPSFVQLNQIIHQLLNA 301 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 K + + +G + R AN L++ +++ + Y ++ Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341 >gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1] gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1] Length = 443 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 20/395 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I +A SGG DS+ LLI R I A +VDH LR + E + + Sbjct: 27 LKPSKKIAIAFSGGPDSLALLILAAEWAKKRR--GISLVAFTVDHGLRAASAAEAKAAAR 84 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L + H + W+ KP G+ AAAR+ARYAL+ ++ A ++ AH +DQ ET Sbjct: 85 LSDELGVPHRTLKWRGVKPAKGIQAAARDARYALLLAACRSFGAGDLLVAHHLEDQAETF 144 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +R R G+ + + + + RP + R + + + + ++ DPSN Sbjct: 145 LLRLARGSGVDGLAAMPRARPLSDEEPAVRLLRPLIDLPRSRLLATVARAGLTAIHDPSN 204 Query: 195 TDDRFERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ++RF+RV+ R+ + + L + R+ + + A L+ + + Sbjct: 205 ENERFDRVKARKALALLAPLGLDAARLARTAEHMARARLALEDETAALLRTHAVLSSFGH 264 Query: 250 IAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRV 307 + I+ L + + +L I GG P +E V +G G ++ V Sbjct: 265 VEINMAAFLAAPAEIGLRVLGALCRIVGGGGYGPRMEGLEEVYQAAGTGTLGKGRTLHGV 324 Query: 308 VIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQ---NLSDSLIQIGPQSYR- 360 + L TR + P +IL E +WD R+ + ++ ++ Sbjct: 325 KLAASRGSLVATRELEAAKKSPAIILKAGEEGLWDRRFDIRLKKAPRGAVYEVRALGSNG 384 Query: 361 -KADVPSGIPPIIAQRA-LSSMPSKEG-GKPLLAP 392 A +GIP QR+ L +P G+ +AP Sbjct: 385 LAALKAAGIPLPKGQRSILLPLPGLWREGRLAIAP 419 >gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222] gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222] Length = 409 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 159/406 (39%), Gaps = 21/406 (5%) Query: 1 MFLSPIES-VRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M P+ + V + L + +A+SGG DS L+ H +G+ + A +V Sbjct: 1 MTAEPVAARVHAALDRLAGHRPTLGIALSGGGDSTALMHLAH------GWGRARLLAATV 54 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH LR + DE R + L I H + W + LMAAAREAR L++ A Sbjct: 55 DHGLRPGSADEARQAGLAAAALDIPHETLRWTR-RGGGNLMAAAREARLQLLAGWAGRHG 113 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + ++ HT DDQ ET+ MR R G+ + + RP L R D+R Sbjct: 114 LSAVLLGHTLDDQAETLLMRLNRGAGVDGLSAM---APMREAFGVTWLRPMLEIGRADLR 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAM 236 +L R + W +DPSN ++ FERVRVR+ + +DL L R + + + Sbjct: 171 HWLAARGLGWADDPSNENEDFERVRVRKAIAALDLPMRQLAQSAANLAMARDALCDFASR 230 Query: 237 LIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + +A+ D + LL GG P + + L+ Sbjct: 231 VAEG--AQSRAGSLALPLDAFRAAPLEIRRRLLVAGLRFVGGSDYPPRRGPLLHALAVLE 288 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 G G +++ V+ + R FLW+ R +WD R+Q L Q+ Sbjct: 289 DG--GRLTLEGVIAEPRDGFLWLVREPAAALRSPAAEGADAIWDRRWQVAGLRPGD-QVR 345 Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400 + + + ++ P G L+ AP R + Sbjct: 346 ALGHEPLPGFDWRGAGLMRDEAAASPGIWAGDRLIAAPVLRPAPGY 391 >gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733] gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1] gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733] gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1] Length = 484 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L F + ++H LRE + +E Y+ Sbjct: 31 QKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + V W+N +T + AAR RY + + +MTAH DDQ+ETV Sbjct: 88 CEKKNLPLYVSVWENPA-KTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + RP L +E++ ++ + + + ED +N Sbjct: 147 MKIIRGGQL--STFSGIKGVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V M+ FQ ++ +I K + + + +D Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQLKDR 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FQFSAEMI 270 >gi|261876168|ref|YP_697160.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124] gi|281185487|sp|Q0TMI0|TILS_CLOP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|255529904|gb|ABG82412.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124] Length = 469 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ + +LVA+SGG DS+ LL L + R I+ A V+HCLR Sbjct: 3 KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59 Query: 64 ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + YV ++C L I V +K A RE RY E + Sbjct: 60 GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ MR+ R +G L G+ + RP L RR++I Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N++ D +N ++ + R ++R F+ + + + + K + Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233 Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + K L + I I ++ N LL +++ + + + + ++ ++ Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293 Query: 292 LFLKSGKRGCVSIGRVVI 309 G ++I VI Sbjct: 294 ALKDKGTGKQINITNGVI 311 >gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15] gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15] Length = 481 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 8/251 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + IL AVSGG DSM LL L F + ++H LRE + +E Y+ Sbjct: 25 RFWQKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYL 81 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C + + V W++ +T + AAR RY + + +MTAH DDQ+E Sbjct: 82 RSYCEKKNLPLYVSVWEDPA-KTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIE 140 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV M+ R SG+ + + + RP L +E++ ++ + + + ED + Sbjct: 141 TVLMKIIRGGQL--STFSGIKEVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQT 197 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N +R R+R V M+ FQ ++ +I K + + + Sbjct: 198 NQLLDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQL 256 Query: 254 QDILNIDSTLL 264 +D + ++ Sbjct: 257 KDRFQFSAEMI 267 >gi|168206867|ref|ZP_02632872.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str. JGS1987] gi|168211206|ref|ZP_02636831.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC 3626] gi|170661729|gb|EDT14412.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str. JGS1987] gi|170710765|gb|EDT22947.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC 3626] Length = 469 Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 21/303 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVC 77 +LVA+SGG DS+ LL L + R I+ A V+HCLR + + YV ++C Sbjct: 18 GDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELC 74 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I V +K A RE RY E + I AH +DQ E Sbjct: 75 KNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAE 134 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR+ R +G L G+ + RP L RR++I + N++ D + Sbjct: 135 TLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDET 188 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY---LTVHM 246 N ++ + R ++R F+ + + + + K + + K L + Sbjct: 189 NLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIKE 248 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 I I ++ N LL +++ + + + + ++ ++ G ++I Sbjct: 249 NHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDIIALKDKGTGKQINITN 308 Query: 307 VVI 309 VI Sbjct: 309 GVI 311 >gi|262170788|ref|ZP_06038466.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451] gi|261891864|gb|EEY37850.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451] Length = 440 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 22/319 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +++A+SGG DS LL L R A+ V H L A Sbjct: 7 HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V+ C I+ + + + AREARY +S+H + TL++ Sbjct: 64 WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVDS--DTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG LS M + +++RP L R+DI ++ +Q+ +S Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-YLARPLLTVSRQDIEAYAMQKKLS 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R + + L + +++ ++ +L+ + L ++ Sbjct: 179 WVTDESNLDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237 Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + + L+R A ++ +P + +++ Sbjct: 238 RAITQNGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWYEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWI 318 + + ++ + R L + Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314 >gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 509 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 31/288 (10%) Query: 12 FVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE- 69 F + L+ +LV VSGG DS+ LL L+ + + F K ++H R+ + +E Sbjct: 10 FEKGLIKSGDKVLVGVSGGPDSVALLHVLYELRQELQF---KLVVSHLNHGFRDKSAEED 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTA 125 +V + L + W+ + AR RY + AK AT + Sbjct: 67 ADFVKKLAEDLELPIIYDKWQVKDYINYYKLSPQQGARIQRYKFFEQAAKDFGATKLALG 126 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ+ET ++R R +G LSGM + +L + RP L + +I+ +L Sbjct: 127 HHIDDQVETFFLRLIRGAGTQG--LSGMQFIRKLNNDLLLIRPLLEVSKSEIKEYLQTNK 184 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + + DP+N + + R +VR + + FQD+ +N + + Sbjct: 185 LKYKIDPTNQETNYLRNKVRHEILPV-----------FQDINPNINERL---------LE 224 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 ++ D LN + L+ +V Y+ ER +LF Sbjct: 225 TMELLKEENDYLNKAANELYQKSQVDTGRSQNNTKPLAYQGQERELLF 272 >gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] Length = 427 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 27/300 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ IE + ILVAVSGG DS LL L V + K +VDH Sbjct: 8 FIQKIEEYNLIEEN----DRILVAVSGGVDSSVLLNLLARVQE---YFKFSIFCATVDHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 +R+ +K+EV++V ++ L + + + + + + AAR+ RY ++E AK I Sbjct: 61 IRKESKEEVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKI 120 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA + TAH +D ETV R R G+ GM N I RP L R++I Sbjct: 121 NANKVATAHNLNDLAETVLFRLARGTGP--FGIYGMK-----PRNGNIIRPLLFFERKEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHALYLKM-KKFQDLRVKVNNAV 234 F + I + D +N D ++ R +R + I +++ L+ + +F + ++++ V Sbjct: 174 EQFATENKIPFVVDKTNFDTKYTRNFIRHKIIPIFKEINPLFEQAVLRFVENVWELDSFV 233 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + T I + D +L +R G+ P ++R+ L Sbjct: 234 KDKL-NVETFEFEGRIFFK---VPKDEYILVEFIRRKTMEHFGRA--PDKEKLDRLKKNL 287 >gi|289433574|ref|YP_003463446.1| hypothetical protein lse_0205 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169818|emb|CBH26356.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 648 Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 24/295 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L K S ++H LRE A E V + C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +I + K Q G+ AR ARY + N ++ AH DDQ+E Sbjct: 77 EKHKIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS-- 248 N+ ++ R R R+ + + +Y ++F + + + L L ++ Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPGVYAHFERFSEETSEDFRYLEDLASDLLKKNLIKNG 253 Query: 249 ------IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + + + + + LLR G I+ + +++ ++S Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDAGLITA---NHIYQIIQMIQSD 305 >gi|168215140|ref|ZP_02640765.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str. F4969] gi|170713441|gb|EDT25623.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str. F4969] Length = 469 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 21/304 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDV 76 +LVA+SGG DS+ LL L + R I+ A V+HCLR + + YV ++ Sbjct: 17 SGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEEL 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I V +K A RE RY E + I AH +DQ Sbjct: 74 CKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ MR+ R +G L G+ + RP L RR++I + N++ D Sbjct: 134 ETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDE 187 Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY---LTVH 245 +N ++ + R ++R F+ + + + + K + + K L + Sbjct: 188 TNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIK 247 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 I I ++ N LL +++ + + + + ++ +++ G ++I Sbjct: 248 ENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDIIVLKDKGTGKQINIT 307 Query: 306 RVVI 309 VI Sbjct: 308 NGVI 311 >gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980] gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980] Length = 484 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 8/251 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + IL AVSGG DSM LL L F + ++H LRE + +E Y+ Sbjct: 28 RFWQKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYL 84 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C + + V W++ +T + AAR RY + + +MTAH DDQ+E Sbjct: 85 RSYCEKKNLPLYVSVWEDPA-KTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIE 143 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV M+ R SG+ + + + RP L +E++ ++ + + + ED + Sbjct: 144 TVLMKIIRGGQL--STFSGIKEVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQT 200 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N +R R+R V M+ FQ ++ +I K + + + Sbjct: 201 NQLLDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQL 259 Query: 254 QDILNIDSTLL 264 +D + ++ Sbjct: 260 KDRFQFSAEMI 270 >gi|315127141|ref|YP_004069144.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913] gi|315015655|gb|ADT68993.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913] Length = 436 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 149/329 (45%), Gaps = 19/329 (5%) Query: 1 MFLSPI-ESVRFFVRSLVYPAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M +PI V+ + + VA+SGG DS+ LL +H++ ++ SAI Sbjct: 1 MHKTPIYLQVKKALNHYLENGQFTFTVALSGGVDSVVLLQVMHALKQQC--PQLDLSAIY 58 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKT 116 V+H L + A ++ C +L I + K +T + A AREARY + EH + Sbjct: 59 VNHGLSDNAHHWRQFCHARCEQLSIDFKAANVIIEPKSRTSIEAQAREARYQALDEH--S 116 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++I+ +DQ+ET +R +R KG+G M T + + RP L +R D Sbjct: 117 PSDSVILLGQHLNDQVETFLLRLKRGSGLKGLG--AMQQTRVLESGRECYRPLLGVKRSD 174 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I +F Q NIS D SN+++RF+R +R+ + L + ++ +++ Sbjct: 175 IEAFAQQFNISHITDESNSNERFDRNFLRQQIVP-KLAERFTGFEQCTARSIELLQQQQA 233 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERVM- 291 L+ +Y + I Q LNI + + +R++ + ++P + + ++M Sbjct: 234 LLDEYTQQDLAQCINQHQ-ALNIQNMAHYSAIRIANLLRAWLALFTHTMPSQKQLMQIMS 292 Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWI 318 + K+ + + + I R +L+ Sbjct: 293 QAIHAKADAQMVIELSDGQIRRHQGYLYF 321 >gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella adiacens ATCC 49175] gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella adiacens ATCC 49175] Length = 457 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 21/332 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++AVSGG DSM LL A+ + D + I V++ LR + DE + V C Sbjct: 18 HQKYVLAVSGGVDSMVLLNAMALLFEDHAKDHI--VVAHVNYGLRAQSMDEEQLVRRFCK 75 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +I + ++K +K + + R RY E K A ++ AH DDQLET+ M+ Sbjct: 76 SRQIPFEIKNFKETKEEKASESILRNFRYEFFEEVLKKHQAHYLVVAHHQDDQLETILMK 135 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G LSGM + + I RPFL ++++ + + ED SN D Sbjct: 136 WSRGSTLEG--LSGMKEIRQV-KGMTILRPFLSLNKKELYQEAETHQVPYLEDESNESDN 192 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI------PKYLTVHMRSIIAI 252 + R R R V FQ + +AVA L+ + L + + Sbjct: 193 YTRNRYRHHVVPFLKEENPNAGSHFQKSAQMIADAVACLMPILEEKQELLFQKGKKRVLF 252 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI----GRVV 308 ++ + + LL I + ME+++ + S K +++ G Sbjct: 253 HREAFLKEPVEMQRLLLQQVLI--QMDTTISVVQMEQILEKIGSNK-AQLTLDLSNGWKF 309 Query: 309 IDRRANFLWIT---RAVRNLPTLILYPEETTV 337 R L+ R V N+ ++ PE+T + Sbjct: 310 KKRYEECLFEKGRPRVVPNIEYVLSKPEDTLI 341 >gi|182626023|ref|ZP_02953786.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str. JGS1721] gi|177908730|gb|EDT71241.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str. JGS1721] Length = 469 Score = 226 bits (576), Expect = 6e-57, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ + +LVA+SGG DS+ LL L + R I+ A V+HCLR Sbjct: 3 KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59 Query: 64 ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + YV ++C L I V +K A RE RY E + Sbjct: 60 GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ MR+ R +G L G+ + RP L RR++I Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N++ D +N ++ + R ++R F+ + + + + K + Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233 Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + K L + I I ++ N LL +++ + + + + ++ ++ Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293 Query: 292 LFLKSGKRGCVSIGRVVI 309 G ++I +I Sbjct: 294 ALKDKGTGKQINITNGII 311 >gi|253681327|ref|ZP_04862125.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873] gi|253562565|gb|EES92016.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873] Length = 462 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 24/305 (7%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 IE V ++ ++VAVSGG DS+ LL L+ + R I A ++HCL Sbjct: 2 IEKVIHTIKQNNMFEVGDKVVVAVSGGPDSICLLHILYKL---REKIGISIVAAHINHCL 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E A + YV C L I V V + A RE RY SE + Sbjct: 59 RGEEADKDEEYVRKFCENLNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNV 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH +DQ ET+ MR R G GL G+ N++ RP + R++I Sbjct: 119 RANKIAVAHNANDQAETILMRMLR-----GTGLEGLIGIRAVRDNIF-VRPIIDITRDEI 172 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233 + N++ D +N ++ + R ++R + + + +F D N+ Sbjct: 173 EDYCYVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKIDNDY 232 Query: 234 VAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + + + + + I +++ +L ++R++ G ++ + + Sbjct: 233 LNKVSLEKYNKYCKGEKDKVIIKEEVFKEHEAILTRVIRMALKELKGNLNNFDKGHIYDI 292 Query: 291 MLFLK 295 + K Sbjct: 293 IDIQK 297 >gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003] gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003] Length = 429 Score = 226 bits (576), Expect = 7e-57, Method: Composition-based stats. Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 28/416 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + L E+ VR+ + + VAVSGGSDS+ L+ L ++ +A++VDH Sbjct: 22 LLLWAAEAAVETVRTRMTAPRLAVAVSGGSDSLATLVLLSALHP--------VAAVTVDH 73 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR A E V C+ I HS++ W + LM AAR AR LI A+ Sbjct: 74 GLRPEAAAEAEVVGQFCAERGIDHSILRWDGRGARGNLMDAARRARLRLIGAWAQDRGIG 133 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + HT DDQ ET MR R+ +G LSGM ++ + LW RPFL R ++R Sbjct: 134 AVALGHTGDDQAETFLMRLAREAGLEG--LSGMRESFESEGVLW-FRPFLSQTRAELRGH 190 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVA 235 L ++ I W EDPSN +DRF+RV+ R+ + I L + V ++ Sbjct: 191 LQRQGIGWIEDPSNENDRFDRVKARKALAALAPLGITAGKLSTVVGHLAMAEQSVLWSLD 250 Query: 236 MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 LI ++ ++ +Q + D LL + G P + V+ Sbjct: 251 HLIAAHVRFDAGDVVIDAQGFRDAFDPETGRRLLNAALVWVSGSYYPPRAVQVIDVLTTW 310 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---L 351 ++ + ++ I + ITR R + L L + VWDG ++ + L Sbjct: 311 RTRRDR--TLHGCRILVGDEAIRITREARAVAALRLPFGQ--VWDG-WRIEGPDRPGLML 365 Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAY 406 +G + R+ + G + +L + P+ G+ LL AP + + ++ + Sbjct: 366 AALGAEGLRQ--LGEGCSRARPRASLLASPAVWQGETLLAAPVAGWKNGYEARLVR 419 >gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70] gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70] Length = 462 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 132/360 (36%), Gaps = 34/360 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I V F++ L + ++V VSGG DS+ LL H S R I A VDH Sbjct: 2 IAEVYEFIKKHELLTPNSTVIVGVSGGPDSLALL---HFFWSIRQEWNITLIAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117 R +++++ +V C+ I V + + G+ AAR+ RY E K Sbjct: 59 RGKQSEEDMNFVKHFCAARGIICEAVQMDVPAFQRESKLGVQEAARQCRYRFFGELMKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + +I RPFL R DI Sbjct: 119 KAHYLALGHHGDDQVETILMRLVRGSTSKGY--AGIPAKRPF-YGGYIIRPFLAISRADI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAV 234 ++ Q I+ D SN D + R R R V + L+ + + + ++ ++ + Sbjct: 176 DAYCRQHQITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMVMEDELFL 235 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-----PGYRSMER 289 L + M + + L R + + + Sbjct: 236 EELAKDAMNKVMEKQHDTVALKIEPFQAMPKPLQRRGIQLILNYLYKDIPSSLSSVHIHN 295 Query: 290 VMLFLKSGK---RGCVSIGRVVIDRRANFLWITRAVR---------NLPTLILYPEETTV 337 + FL R G VI L+ R + ++P ++ P + Sbjct: 296 IFTFLNRDHPSGRLDFPHGLKVIRSYDRCLFTFREEKEDISYAFELDIPAVLPLPNNHVI 355 >gi|110802414|ref|YP_699728.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101] gi|110682915|gb|ABG86285.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101] Length = 469 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 128/318 (40%), Gaps = 24/318 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ + +LVA+SGG DS+ LL L + + I+ A V+HCLR Sbjct: 3 KKVIDFIKENSMIKSGDKVLVALSGGPDSVCLLHILSEL---KELLHIEVYAAHVNHCLR 59 Query: 64 ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + YV ++C L I V +K A RE RY E + Sbjct: 60 GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ MR+ R +G L G+ + RP L RR++I Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N++ D +N ++ + R ++R F+ + + + + K + Sbjct: 174 EYCEINNLTPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVNTLNRLAYSCSKDVEFI 233 Query: 235 AMLIPKYLT---VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + K T + + I I ++ N LL +++ + + + + ++ ++ Sbjct: 234 QEEVEKRFTKLCIKENNSILIKEEAFNAKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293 Query: 292 LFLKSGKRGCVSIGRVVI 309 G ++I VI Sbjct: 294 ALKDKGTGKQINITNGVI 311 >gi|302871264|ref|YP_003839900.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574123|gb|ADL41914.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 456 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 134/333 (40%), Gaps = 28/333 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 +S +E V+ + L +L+ SGG DSM LL ++ + + S + + ++ Sbjct: 1 MSLMEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDEYS---LDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A D+ ++V ++C R I +K A R ARY+ E AK Sbjct: 58 HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAK 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I+ I H +D +ET ++ R + +G+ + + I+RP + RE Sbjct: 118 EISIDRIFLGHNKNDVVETFFLNLFRGSSLEGLA-------SIPPVRDIIARPLINISRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227 +I F NI + D +N +++R VR + + ++ ++ ++ Sbjct: 171 EIEEFARVNNIPFVVDKTNYSLKYKRNIVRNEILPLIKERFGESVVSTIFRTIEIIREEN 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + I + N+ L ++++ IS + + Sbjct: 231 DQIEELAHNFFQECVQKEDFYYILNIEKTKNLPVFLQRRIIKMILECFNSSISYDMMKEI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 E + L SGK+ +V++++ + L + Sbjct: 291 EELFS-LSSGKKKVYK--NLVVEKQNDSLVFYK 320 >gi|78485607|ref|YP_391532.1| PP-loop [Thiomicrospira crunogena XCL-2] gi|123555425|sp|Q31G65|TILS_THICR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|78363893|gb|ABB41858.1| tRNA(Ile)-lysidine synthetase [Thiomicrospira crunogena XCL-2] Length = 420 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 125/326 (38%), Gaps = 16/326 (4%) Query: 1 MFLSPIE-SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M +E ++ + P LVA SGG DS +L AL +S +S A+ ++ Sbjct: 1 MSYQKVELAISKLIHLYPSPVQFLVAFSGGLDSTVMLDALCKHVSPQS-----IHAVYIN 55 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTIN 118 H L+ + C RL + V + S + G+ A AR+ RY + + Sbjct: 56 HGLQPESNQWADACKKACERLGVKFESVDVQVSDISRQGIEAVARQKRYEALYS--RVTK 113 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDI 177 T+++TAH DQ ET+ + R G+ G+ + + L + L RP L + I Sbjct: 114 GTILLTAHHQRDQAETLLLNMARGAGISGLSGMPYVKNIQLNEQTLQHCRPLLNVDYDAI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +S+ Q + W ED SN + + R +R V HA F +N ++A+L Sbjct: 174 QSYAKQYRLDWVEDSSNQELDYRRNYLRHEVLPKIRHAWPFSDANFAKSAHHLNESLALL 233 Query: 238 IP-KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG-----YRSMERVM 291 + + N+ L ++ +S Y+ ++ + Sbjct: 234 NELAEIDLQHTDYTDFYLSFTNVKELRWSRLKNMTRYWTESYVSGLRLNAKIYQWLQECL 293 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLW 317 + + + R + + L+ Sbjct: 294 NNKNPQAKPKMLLARGELRFYNHVLY 319 >gi|240115610|ref|ZP_04729672.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18] gi|260440579|ref|ZP_05794395.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2] Length = 411 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 112/313 (35%), Gaps = 14/313 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DS+ LL L F A+ + H L A D + + C L + Sbjct: 2 ALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCRNYCDMLGVGL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V K G+ AAAR+ RYA + ++ AH DDQ+ET + R Sbjct: 59 ETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRF 172 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261 R + + + + + +A+L + + + L Sbjct: 173 RHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYFDTARWLTFSP 232 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++LR + I +P ++ + L K G ++ + A L++ + Sbjct: 233 RRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFAS 290 Query: 322 VRNLPTLILYPEE 334 + L Sbjct: 291 EQLAKPAFLKDGT 303 >gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 452 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%) Query: 13 VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 +R L + +L+AVS G DSM LL + + ++ + +DH LRE +K+E + Sbjct: 16 LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINVAYIDHQLREQSKEETK 72 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + C I V W K P + AAARE RY + K N ++TAH DD Sbjct: 73 FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET M+ R + L + ++ + I RP L +++I + Q I + E Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247 D +N D ++R R+R + + +K ++ N A+ + L + Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + LL + G +I +++++ L K+ I Sbjct: 251 EETLGYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDKKKPQAKI 304 >gi|258621013|ref|ZP_05716047.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573] gi|258586401|gb|EEW11116.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573] Length = 440 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 22/319 (6%) Query: 11 FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 FV+ L +++A+SGG DS LL L R A+ V H L A Sbjct: 7 HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63 Query: 69 EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + C I+ + + + AREARY +S+H + TL++ Sbjct: 64 WAQDCQTWCQAANISCQIEHVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET + +R KG LS M + ++RP L R+DI ++ +Q+ +S Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W D SN D R+ER +R + + L + +++ ++ +L+ + L ++ Sbjct: 179 WVTDESNFDIRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237 Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 I + L+R A ++ +P + +++ Sbjct: 238 RAITEDGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWHEVALASEDAN 295 Query: 300 GCVSIGRVVIDRRANFLWI 318 + + ++ + R L + Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314 >gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 454 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 128/337 (37%), Gaps = 28/337 (8%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR ++ + L +L+ VSGG DSM LL +H + ++ G + + ++H L Sbjct: 2 LRKVREYIWEEKLLEPGKKVLLGVSGGPDSMALLHIMHKLTTEMDLG---LAVLHLNHGL 58 Query: 63 RETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R A E +V + C I + + + L A R+ RY E + + Sbjct: 59 RPEAAAEEEFVREHCRNWGIDFYSRQADIRALALQEKKTLEEAGRDCRYRYFFEQLEELQ 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I TAH DDQ ETV + R KG+ + + RP L + +I Sbjct: 119 ADYIATAHHQDDQAETVLLHLLRGSGLKGL-------RGIMPRKGQLLRPLLALSKAEII 171 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L + I +C D SN D +F R R+R + + +L +D + Sbjct: 172 HYLDENQIPYCLDQSNNDLKFLRNRIRCELIPYLQKAYNPRIMESLNQLAGIARDENDYL 231 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQI--SLPGYRSM 287 + K L +I + + L L L+ + A G+ L + + Sbjct: 232 EKQLHFSWDKLLLWQEPGVIVLDKKALGEEHPALQKRLILEALARLRGESGWELKDVQRI 291 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 R++ S K + G V + R +R Sbjct: 292 LRLLDQSGSSKYIQLKQGLRVSSVYQELHFTNRPLRE 328 >gi|169343171|ref|ZP_02864192.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str. JGS1495] gi|169298723|gb|EDS80799.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str. JGS1495] Length = 469 Score = 225 bits (575), Expect = 9e-57, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 23/305 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDV 76 +LVA+SGG DS+ LL L + R I+ A V+HCLR + + YV ++ Sbjct: 17 SGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEEL 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I V +K A RE RY E + I AH +DQ Sbjct: 74 CKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ MR+ R +G L G+ + RP L RR++I + N++ D Sbjct: 134 ETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDE 187 Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244 +N ++ + R ++R F+ + + + + K + V PK Sbjct: 188 TNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIK 247 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 RSI+ I ++ N LL +++ + + + + ++ ++ G ++I Sbjct: 248 ENRSIL-IKEEAFNEKEALLTRIIKKALFEVSYKHNNFELKHIQDIIALKDKGTGKQINI 306 Query: 305 GRVVI 309 VI Sbjct: 307 TNGVI 311 >gi|291551165|emb|CBL27427.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus torques L2-14] Length = 482 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 19/249 (7%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M +E + ++R + I++ VSGG+DS+ LL+AL S+ F + Sbjct: 1 MMDKRLEKIENYIRQYHMIEKGDRIVIGVSGGADSVCLLMALCSLQEKLGF---QVLVCH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISE 112 V+H LR E A + YV +C ++++ H V K + L A R R + Sbjct: 58 VNHELRGEEAAQDEAYVEMLCHKMQVPFFAFHENVELIAKKRKESLEEAGRYVRRQAFEQ 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + T I TAH +D ET+ + R G GL G+C + + RP L Sbjct: 118 LCREQGGTKIATAHHSNDNAETMLLNMAR-----GTGLRGLCG--IRPVYGKWIRPLLEL 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVN 231 RE+I +L IS+C D +N +D + R R+R + + + + ++ F L + Sbjct: 171 SREEIEQWLKDCEISYCIDETNQEDEYTRNRIRHHIIPVLEEQVNTRAIEHFVKLSEQAE 230 Query: 232 NAVAMLIPK 240 L + Sbjct: 231 EIYEYLEKQ 239 >gi|206890355|ref|YP_002248733.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742293|gb|ACI21350.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermodesulfovibrio yellowstonii DSM 11347] Length = 460 Score = 225 bits (574), Expect = 9e-57, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 27/314 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + I+ V+ + L H+LV +SGG DS+ LL L+ + +S K+K SA +D Sbjct: 1 MDIIKKVKQTIEKYNMLSVGDHVLVGLSGGPDSVCLLQILNIL---KSSYKLKISAAYID 57 Query: 60 HCLRETA-KDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 H LR E+ + +C L I V S K + + AAR RYA + + + Sbjct: 58 HELRPDDVPKEIEFCKKLCESLNIPFYVQSINVKDFAKKEKISIQEAARILRYAALDQIS 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 INA I AH DDQ ETV MR R GLSG+ I RP + R Sbjct: 118 ININAHKIAVAHNADDQAETVIMRLLRGAGP--AGLSGIPPVRKK-----IIRPLIEIER 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231 +I FL ++NIS+ DPSN ++ R ++R+ + + + K D+ + N Sbjct: 171 TEIERFLSEKNISYIIDPSNESMKYLRNKIRKTLMPVIKTVSPKATKIISKTADIIREEN 230 Query: 232 NAVAMLIPKYL-TVHMRSIIAISQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + + + K L + R + N ++ +L LR + G L + Sbjct: 231 DYINVAVTKALMRLMSRKTDKTIELFCNPMEVLNIVILRRALRFAIDSVKGLKGL-TFDH 289 Query: 287 MERVMLFLKSGKRG 300 +E ++ +K+GK G Sbjct: 290 IEDIINLIKTGKTG 303 >gi|205351573|ref|YP_002225374.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271354|emb|CAR36147.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 403 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 139/386 (36%), Gaps = 40/386 (10%) Query: 38 ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 LH ++ R + AI + H L A VR+ VC R ++ V + Sbjct: 2 LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGL 61 Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A AREARY ++ + ++ TA DDQ ET + +R G+ G C Sbjct: 62 GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGECSP 119 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 + RP LR R+ + + ++ + W ED SN DD ++R +R L L Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALPLL 172 Query: 217 YLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA- 272 + F + + L+ + L + I ++ L + + +R +A Sbjct: 173 QQRWPHFPASVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMSMSDVRRAAI 231 Query: 273 ---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NL 325 + +P ++ER+ + C+ G I R + LW ++V Sbjct: 232 LRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQH 291 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPS 382 T + +P T L L + + P + + + + Sbjct: 292 ETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVG 344 Query: 383 KEGGKPL--------LAPFSRFMTKF 400 + GG+ L + P+ R T Sbjct: 345 RNGGRKLKKIWQEQGIPPWRRDTTPL 370 >gi|157364389|ref|YP_001471156.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO] gi|166988068|sp|A8F7F8|TILS_THELT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157314993|gb|ABV34092.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO] Length = 447 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 23/293 (7%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L++P H +LVA+SGG DSM LL L + R + A ++H +RE A + ++ Sbjct: 17 HHLIFPGHKVLVALSGGMDSMSLLNILLKL---RQKLNCEIFAAHLNHMIRENAIRDEQF 73 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V C + + V + K + G+ AR ARY ++ A LI AH Sbjct: 74 VYSYCKKAGVKIFVERFDVPKFCADRKIGIEEGARAARYTFLNRIAHENGIDLIALAHNL 133 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET+ R R G GLSG+ L D N RP L +RE I +++ + NI + Sbjct: 134 NDLVETILYRIVR-----GTGLSGIVCMKLKDENK--IRPLLYFKREQIEAYIKRNNIPY 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKYLTVH 245 +D +N + ++ R +R + F + + + N V LI KY Sbjct: 187 VQDETNFNLKYSRNYIRHRIVPALKLLNSDLENAFSQVHFSGMMLENHVKRLIKKYSERI 246 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSG 297 R I D ++D + L++ C GQ+++ YR ++ V+ L Sbjct: 247 FRCGKRIIFDSKDMDEFEIIELVKY----CAGQMNVDLNYRQIQLVVSKLNEN 295 >gi|219853482|ref|YP_002470604.1| hypothetical protein CKR_0139 [Clostridium kluyveri NBRC 12016] gi|219567206|dbj|BAH05190.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 465 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 32/320 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS IE + F R ++VAVSGG DS+ LL L+ + + I A V+HCL Sbjct: 9 LSTIEENKMFNR----GDKVIVAVSGGPDSICLLHMLYVLQNRL---DITLYAAHVNHCL 61 Query: 63 R-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E + YV C L + + V++ + + +A RE RY E K + Sbjct: 62 RGEEGDKDEEYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKKL 121 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH +DQ ETV MR R G GL G+ N++ RP +R R++I Sbjct: 122 KAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVF-VRPLIRITRDEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233 + N+ D +N + + R ++R + + + + + D+ N+ Sbjct: 176 EKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDIVAVLNRLSDIIKIDNDY 235 Query: 234 VAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + + KY + + +I + L D +L ++R+S + G + + +E+ Sbjct: 236 LNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL-----KDIEK 289 Query: 290 VMLFLKSGKRGCVSIGRVVI 309 + +F + C + +++ Sbjct: 290 IHIFSIINVQKCSTGKEIML 309 >gi|153952817|ref|YP_001393582.1| TilS [Clostridium kluyveri DSM 555] gi|146345698|gb|EDK32234.1| TilS [Clostridium kluyveri DSM 555] Length = 462 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 32/320 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS IE + F R ++VAVSGG DS+ LL L+ + + I A V+HCL Sbjct: 6 LSTIEENKMFNR----GDKVIVAVSGGPDSICLLHMLYVLQNRL---DITLYAAHVNHCL 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E + YV C L + + V++ + + +A RE RY E K + Sbjct: 59 RGEEGDKDEEYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKKL 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH +DQ ETV MR R G GL G+ N++ RP +R R++I Sbjct: 119 KAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVF-VRPLIRITRDEI 172 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233 + N+ D +N + + R ++R + + + + + D+ N+ Sbjct: 173 EKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDIVAVLNRLSDIIKIDNDY 232 Query: 234 VAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + + KY + + +I + L D +L ++R+S + G + + +E+ Sbjct: 233 LNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL-----KDIEK 286 Query: 290 VMLFLKSGKRGCVSIGRVVI 309 + +F + C + +++ Sbjct: 287 IHIFSIINVQKCSTGKEIML 306 >gi|260902380|ref|ZP_05910775.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037] gi|308110178|gb|EFO47718.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037] Length = 438 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 28/335 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VA SGG DS + L + R + A+ V H L E A + Sbjct: 21 KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ SV ++ + + AREARY ++ H L++T DDQ+ET + Sbjct: 78 GISCSVERVNLDTNSGESIESLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +T+ + + RP L +RE I + + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAETMPFA-GGTLVRPLLNIKREQIEATAKNIGLEWVEDESNQDTRY 192 Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R + +++ +++ L + + L+ +++ +++S D Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLGSVFARALQADLSLSIDE 252 Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312 L I S L L+R+ + ++P + + + + + + I R Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQAQLRLIWQEVALAQQDANPKLKLKQGEIRRF 310 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 + L+ ++ + W G Q Sbjct: 311 QSKLYWVTPHADVTS----------WQGHIQIDEP 335 >gi|291561227|emb|CBL40026.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 541 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 22/265 (8%) Query: 4 SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + V F++ +L AVSGG+DS+ LL+ LH + ++ IK A ++H Sbjct: 15 RFRQKVLSFMKKNHMTDRGDSVLAAVSGGADSVCLLLLLHEMAAELG---IKVFAFHMNH 71 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 +R A + R+V ++C RL I +V V ++ A R RY + E A+ Sbjct: 72 GIRGAEADRDERFVMELCERLNIPLTVAHEKVEEYAAERGLSGEEAGRILRYHHLGETAE 131 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I AH DD ETV + R GL+G+ N I RP L R+ Sbjct: 132 KYQCAKIAVAHHEDDDAETVLLNLFRGS-----GLAGLSGIRPVREN--IIRPLLCVSRK 184 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I +L ++ +SWCED +N ++ + R ++R + + + + + V+ A Sbjct: 185 EIEEYLNEQELSWCEDSTNKENDYTRNKIRNELLPWVTENI---NSRAAEHILAVSEFAA 241 Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260 Y + I+ S + Sbjct: 242 Q-ADAYFEMEAERILEESCSKRREE 265 >gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118] gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118] Length = 452 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%) Query: 13 VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 +R L + +L+AVS G DSM LL + + ++ + +DH LRE +K+E + Sbjct: 16 LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINIAYIDHQLREQSKEETK 72 Query: 72 YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + C I V W K P + AAARE RY + K N ++TAH DD Sbjct: 73 FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET M+ R + L + ++ + I RP L +++I + Q I + E Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247 D +N D ++R R+R + + +K ++ N A+ + L + Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + LL + G +I +++++ L K+ I Sbjct: 251 EETLGYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDKKKPQAKI 304 >gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311] gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311] Length = 465 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 16/259 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+A+SGG DSM LL + + I F+ V+H +RE + +E YV C Sbjct: 17 KKNRLLLAISGGVDSMVLLHLIEQLQKK---IPIDFAVAHVNHKIREESIEEAAYVCTYC 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + I + SW+ +K + + A AR+ RY+ + K T ++TAH DDQ ET+ M Sbjct: 74 KQKNIPYYETSWEEAKDK-NIEARARKFRYSFFANLMKQERYTHLLTAHHLDDQAETMLM 132 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R K + + + RPFL +E IR++ + + I + ED +N D Sbjct: 133 KMVRGTTLKNLAGIQLQQDFSIGK---LVRPFLIFSKEQIRNYAIDKKIMYFEDNTNYSD 189 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---- 253 + R R+R + + ++ L ++ A + LI +T + + S Sbjct: 190 SYARNRMRHQIIPLLKQENKQFLEHMAGLSQQIT-AASSLIDSMITPYFNQWVHQSNAIW 248 Query: 254 ----QDILNIDSTLLFYLL 268 D+L + L Sbjct: 249 YLQLDDLLKQTEEFQLFFL 267 >gi|289663217|ref|ZP_06484798.1| cell cycle protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 469 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 140/389 (35%), Gaps = 26/389 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 50 GPVLLAYSGGMDSNVLLHLLAATPRYRQAG---LRALHVHHGLHTDADAWAAHCQRSCDA 106 Query: 80 LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L++ +V + GL AAAR AR+ + + AH DDQ ET +R Sbjct: 107 LQVPLQIVQVHVERDSGLGLEAAARNARHTAFAHALAA--GEWLALAHHRDDQAETFLLR 164 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + R +G+ N + RP L R D+ ++ L + + W EDPSN D R Sbjct: 165 ALRASGPEGLAAM---RPQRPFANGTLWRPLLAHARADLLAYALAQGLRWIEDPSNADPR 221 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQD 255 +R +R V + +A A+L+ + + + + A+ Sbjct: 222 HDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGALDLH 281 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L L + LP ++ER + + ++ C + ++ I R Sbjct: 282 ALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQMEIRRWR 341 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP-------S 366 L++ R P + + WDG Q + +++ + P Sbjct: 342 QCLFLHR-----PAAVWPSDWQASWDGAVPLQLPDGAQLRLLGAPGLRFAQPLLARARQG 396 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 G ++ +RA S L P+ R Sbjct: 397 GERIVLPRRAHSHQLKHLLQALDLPPWER 425 >gi|289668288|ref|ZP_06489363.1| cell cycle protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 469 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 140/389 (35%), Gaps = 26/389 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 50 GPVLLAYSGGMDSNVLLHLLAATPRYRQAG---LRALHVHHGLHTDADAWAAHCQRSCDA 106 Query: 80 LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L++ +V + GL AAAR AR+ + + AH DDQ ET +R Sbjct: 107 LQVPLQIVQVHVERDSGLGLEAAARNARHTAFAHALAA--GEWLALAHHRDDQAETFLLR 164 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + R +G+ N + RP L R D+ ++ L + + W EDPSN D R Sbjct: 165 ALRASGPEGLAAM---RPQRPFANGTLWRPLLAHARADLLAYALAQGLRWIEDPSNADPR 221 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQD 255 +R +R V + +A A+L+ + + + + A+ Sbjct: 222 HDRNFLRSQVLPLLQQRWPQAAGALARSAQLSADASALLLQQDMALLPSVRTASGALDLH 281 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L L + LP ++ER + + ++ C + ++ I R Sbjct: 282 ALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQMEIRRWR 341 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP-------S 366 L++ R P + + WDG Q + +++ + P Sbjct: 342 QCLFLHR-----PAAVWPSDWQASWDGAVPLQLPDGAQLRLLGAPGLRFAQPLLARARQG 396 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 G ++ +RA S L P+ R Sbjct: 397 GERIVLPRRAHSHQLKHLLQALDLPPWER 425 >gi|197361444|ref|YP_002141080.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197092920|emb|CAR58349.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 403 Score = 224 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 138/383 (36%), Gaps = 34/383 (8%) Query: 38 ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 LH ++ R + AI + H L A VR+ VC R ++ V + Sbjct: 2 LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERMTLADNGL 61 Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A AREARY ++ + ++ TA DDQ ET + +R G+ G Sbjct: 62 GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSP 119 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 + RP LR R+ + + ++ + W ED SN DD ++R +R + L Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPL-LQRR 175 Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA---- 272 + + L+ + L + I ++ L + +L +R +A Sbjct: 176 WPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMLMSDVRRAAILRR 234 Query: 273 AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTL 328 + +P ++ER+ + C+ G I R + LW ++V T Sbjct: 235 WLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETT 294 Query: 329 ILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEG 385 +++P T L L + + P + + + + + G Sbjct: 295 VVWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVGRNG 347 Query: 386 GKPL--------LAPFSRFMTKF 400 G+ L + P+ R T Sbjct: 348 GRKLKKIWQEQGIPPWRRDTTPL 370 >gi|217974044|ref|YP_002358795.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223] gi|217499179|gb|ACK47372.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223] Length = 496 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 130/319 (40%), Gaps = 18/319 (5%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L R + + + V H L + A ++ Sbjct: 24 AQSLAPSCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V ++ P+ L A AR+ RY I H +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 SN DD+++R +R + ++ + L + + + + + L + + Sbjct: 197 ESNQDDKYDRNFLRLEIIPRLKSRWPSIATTASRSAALCAEQQATLDVQVSERLPLWLTQ 256 Query: 249 IIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +Q + +D + L + I +LP + +++ L K + Sbjct: 257 APYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQVLTAKDDAKVH 316 Query: 302 VSIGRVVIDRRANFLWITR 320 + +G I R AN +++ + Sbjct: 317 IRVGECEIRRFANRVYLFK 335 >gi|152999993|ref|YP_001365674.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185] gi|151364611|gb|ABS07611.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185] Length = 491 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 126/326 (38%), Gaps = 32/326 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L + + V H L + A ++ Sbjct: 24 AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL--VYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V ++ P+ L A AR+ RY I H +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN DD+++R +R L + ++ + + + A+ + T+ ++ Sbjct: 197 ESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASRSAALCAEQQATLDLQVSER 249 Query: 252 ISQDILNIDSTLL--------------FYLLRVSAAICGGQISLPGYRSMERV---MLFL 294 + + + L + I +LP + ++ +L Sbjct: 250 LPLWLTQAPYHTQCVFKLEGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQLLTA 309 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR 320 K + + +G I R AN +++ + Sbjct: 310 KDDAKVHIRVGECEIRRFANQVYLFK 335 >gi|160878299|ref|YP_001557267.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg] gi|160426965|gb|ABX40528.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg] Length = 492 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 26/288 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ V F++ L ++V VSGG+DS+ LL LH + R + A+ V+H L Sbjct: 2 LKKVENFIKDQGMLSPFDTVIVGVSGGADSICLLTCLHRL---REQYHLNLYAVHVNHML 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R A ++ +V +C+ L I V + T + A R RY + + + Sbjct: 59 RGMEADEDEAFVQSMCNSLSIPLHCVREDVKRIAELSGTTIEEAGRNLRYLSFEQECERV 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH +D ETV R G GL+GM + I RP L RE+I Sbjct: 119 KAHKIAVAHNRNDNAETVLFHLFR-----GTGLTGMTG--IPKKRGQIIRPLLCVTREEI 171 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVK 229 +FL +I + D +N + + R ++R + + + + + ++ Sbjct: 172 ETFLFNEHIFYRIDSTNLSNDYTRNKIRLSILPIATNEINERAVEHITSLSDQLLEVANY 231 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 ++ + T+ S+ ++ I+ + +LR + + G Sbjct: 232 LDQVTEREFKRIATLSQESVTLDLREFTAIEDLIKREILRKAIKLISG 279 >gi|261245468|emb|CBG23258.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301156863|emb|CBW16339.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 403 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 138/386 (35%), Gaps = 40/386 (10%) Query: 38 ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96 LH ++ R + AI + H L A VR+ VC R ++ V + Sbjct: 2 LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGL 61 Query: 97 GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 G+ A AREARY ++ + ++ TA DDQ ET + +R G+ G Sbjct: 62 GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSP 119 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 + RP LR R+ + + ++ + W ED SN DD ++R +R L L Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALPLL 172 Query: 217 YLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA- 272 + F + + L+ + L + I ++ L + + +R +A Sbjct: 173 QQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMSMSDVRRAAI 231 Query: 273 ---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NL 325 + +P ++ER+ + C+ G I R + LW ++V Sbjct: 232 LRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQH 291 Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPS 382 T + +P T L L + + P + + + + Sbjct: 292 ETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVG 344 Query: 383 KEGGKPL--------LAPFSRFMTKF 400 + GG+ L + P+ R T Sbjct: 345 RNGGRKLKKIWQEQGIPPWRRDTTPL 370 >gi|253999456|ref|YP_003051519.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4] gi|253986135|gb|ACT50992.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4] Length = 456 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 131/338 (38%), Gaps = 22/338 (6%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 ++ F+ H+LVA+SGG DS LL L ++ ++ I+ S + V H L A Sbjct: 22 LQQFITQHHIEGHLLVALSGGLDSCVLLHLLATLPNN---PGIRLSVMHVHHGLSPHADQ 78 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +C+ I VV + + GL AAAR RY + +A ++ AH Sbjct: 79 WAEHCQRLCASHAIPLQVVHVQVPRDSGQGLEAAARHLRYEA----MRAAHADYVVLAHH 134 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV ++ R G G+ G+ YD + RP L R + + Q + Sbjct: 135 QDDQAETVMLQLLR-----GAGMRGLAAMASYDAQQGLLRPLLDISRAQLAEYAAQHQLE 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVH 245 W ED SN D ++R R+ V + K L+ ++ M + + + Sbjct: 190 WVEDESNHDTHYDRNFCRQQVLPLLEQRFPGAGKALARSALQAAEAESLQMALAELDAAN 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCV 302 A++ L + L + LP ++ R +L + + Sbjct: 250 ALRGDALNVARLQALGEVRARNLLRW-WLSSRLRYLPHREHLQEMLRQLLTAADDAKLAL 308 Query: 303 SI---GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + + + R ++ ++ I++ ++ V Sbjct: 309 LLDGEQGLWLRRYRGHAYVVAQRKSADLDIVWDQQPVV 346 >gi|269101956|ref|ZP_06154653.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161854|gb|EEZ40350.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 467 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 78/406 (19%), Positives = 153/406 (37%), Gaps = 30/406 (7%) Query: 11 FFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 F L YP H +++A SGG DS LL + +++ + A+ V H L A Sbjct: 38 FAQTLLAYPHHSKRLIIAFSGGVDSRVLLELVARFIAE--HPDYQAHAVYVHHGLSAHAD 95 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I+ ++ + + + AR+ARY +S H +++TA Sbjct: 96 EWGIKCQRWAESYGISFTLERVQLETGARVSIEQVARQARYHALSTHMNL--GDILLTAQ 153 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET + +R G+ + + +RP L RR +I F L + Sbjct: 154 HADDQIETFMLALKRGSGPTGLAAMPQWQRFVLGFH---ARPLLTTRRAEIVQFALDHQL 210 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 W ED SN D R++R +R + +L + + ++ L+ + L + Sbjct: 211 DWVEDESNQDTRYDRNFLRHQIVP-ELEQRWPGVVAAVSRSAQLCGEQEELLAELLGQTL 269 Query: 247 RSIIAISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300 I + +L +L F L+R + + +P ++++ K Sbjct: 270 NQAIQSDKSLLLPSPCSKSLGFALIRQW--LKSLAVVMPSLAQLQQIWSSVVHAKEDANP 327 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF-QNLSDSLIQI-GPQS 358 + + I R L++ ++ + ++T D YQ QNL + + G ++ Sbjct: 328 KLCWSQYEIRRYQGRLYVLEQWDDISS----WQQTIALDQTYQLPQNLGKLTLTLQGEKA 383 Query: 359 YRKADVPSGIPPI-IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 + P + + + P G + + ++ +P Sbjct: 384 LLRQPKPDETVSVRFHYQGDAIKPLGRSGSRKI---KKLYQEYQVP 426 >gi|261822581|ref|YP_003260687.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163] gi|261606594|gb|ACX89080.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163] Length = 439 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 128/325 (39%), Gaps = 25/325 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL+A SGG DS LL L ++ R + A + H L A + C Sbjct: 22 GSILLAYSGGMDSSVLLHLL---VAARQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCEH 78 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + ++ G+ AAAR ARY + H + ++TA DDQ ET + Sbjct: 79 WQVPFASLAVTVEAQNGGIEAAARTARYRALQAHLQE--GETLLTAQHLDDQSETFLLAL 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ T+ + + RP L R + ++ + + W ED SN D+RF Sbjct: 137 KRGSGPAGLSAMAAQSTL---GHYRLIRPLLGFSRLQLEAYAQRHQLHWIEDDSNQDERF 193 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254 +R +RR + L L + F + A + S++A+ Q Sbjct: 194 DRNFLRRQI----LPRLTQRWPHFASAVARSAQLCAEQEQLLDELLEESLLALCQPDGAI 249 Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308 +L + F LLR A G ++P ++R+ + + + + ++ Sbjct: 250 SIDGLLPLSPERRFALLRRWLAQQG--TTMPAREQLQRLWDEVATSRQDAEPVLQLNQMQ 307 Query: 309 IDRRANFLWITRAVRNLPTLILYPE 333 I R L++ + +L IL + Sbjct: 308 IRRFRQHLYLLPLMPSLKDRILPWQ 332 >gi|328474388|gb|EGF45193.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 10329] Length = 438 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 132/335 (39%), Gaps = 28/335 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VA SGG DS + L + R + A+ V H L E A + Sbjct: 21 KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ SV ++ + AREARY ++ H L++T DDQ+ET + Sbjct: 78 GISCSVERVNLDTNSGESIELLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +++ + + RP L +RE I + + W ED SN + R+ Sbjct: 136 KRGSGPKG--LSSMAESMPFA-GGTLVRPLLNIKREQIEATAKNIGLEWVEDESNQNTRY 192 Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R + +++ +++ L + + + L+ +++ +++S D Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQESLLDELLGSVFARALQADLSLSIDE 252 Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312 L I S L L+R+ + ++P + + + + + + I R Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQTQLHLIWQEVALAQQDANPKLKLKQGEIRRF 310 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 N L+ ++ + W G Q Sbjct: 311 QNKLYWVTPHADVTS----------WQGHIQIDEP 335 >gi|160874614|ref|YP_001553930.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195] gi|160860136|gb|ABX48670.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195] gi|315266855|gb|ADT93708.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS678] Length = 491 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 18/319 (5%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +SL +++A SGG DS L L + + V H L + A ++ Sbjct: 24 AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL--VYVHHGLSDNADSWAQH 81 Query: 73 VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +V ++ P+ L A AR+ RY I H +++TAH DDQ Sbjct: 82 CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + +R KG+ G + L RP L RE I ++ Q+ + ED Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196 Query: 192 PSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 SN DD+++R +R + ++ + L K + + + + L + + Sbjct: 197 ESNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAALCAKQQATLDVQVSERLPLWLTQ 256 Query: 249 IIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGC 301 +Q + +D + L + I +LP + ++ +L K + Sbjct: 257 APYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQLLTAKDDAKVH 316 Query: 302 VSIGRVVIDRRANFLWITR 320 + +G I R AN +++ + Sbjct: 317 IRVGECEIRRFANQVYLFK 335 >gi|331092502|ref|ZP_08341324.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400723|gb|EGG80326.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium 2_1_46FAA] Length = 470 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 127/342 (37%), Gaps = 29/342 (8%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ V FV L ++V VSGG+DS+ LL L + F + V+H L Sbjct: 2 IKKVARFVAKWEMLNKADKVVVGVSGGADSVCLLFVLMELQKTIGF---DIIVVHVNHLL 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E A+ + +YV ++C + + V V W + L A R R + K Sbjct: 59 RGEDAESDEKYVRELCEKYHLTCEVYRENVEWIAKNKRESLEEAGRNVRREAFEQTLKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T I AH +D ET+ M R G+G N RP L R++I Sbjct: 119 GGTKIALAHHRNDNAETLLMNLARGSGLAGLG-----GMRPVKENR--IRPLLCLERKEI 171 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQDLRVK 229 +LL+R I++C D +N D + R RVR V + + M++ +L+ Sbjct: 172 EEYLLKRQIAYCTDETNYSDAYTRNRVRNHVIRTLEQGVNEKTVAHFSETMERIWELQDY 231 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME- 288 + + + + ++ + L +++ + + +E Sbjct: 232 MEEEAERRYDRVSLEKENKTVLLKEEYEKLPPILRGMVIKKAIVSMTKKEKDIHAVHIEE 291 Query: 289 -RVMLFLKSGKRGCVSIGRVVIDRRAN-FLWITRAVRNLPTL 328 + ++ + G++ + G + R +R Sbjct: 292 VQKLMGNQVGRQIHLPYGVCACRCYEGICITFAREMRQKEEA 333 >gi|239998936|ref|ZP_04718860.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae 35/02] gi|240014155|ref|ZP_04721068.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI18] gi|240016590|ref|ZP_04723130.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA6140] gi|240080779|ref|ZP_04725322.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA19] gi|240112854|ref|ZP_04727344.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae MS11] gi|240117903|ref|ZP_04731965.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1] gi|240121717|ref|ZP_04734679.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID24-1] gi|240123462|ref|ZP_04736418.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID332] gi|240125707|ref|ZP_04738593.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679] gi|240128163|ref|ZP_04740824.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-93-1035] Length = 411 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 112/313 (35%), Gaps = 14/313 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DS+ LL L F A+ + H L A D + + C L + Sbjct: 2 ALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCRNYCDMLGVGL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V K G+ AAAR+ RYA + ++ AH DDQ+ET + R Sbjct: 59 ETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 + L+ M N I RP L R+DI + + + ED SNTD + R R Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRF 172 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261 R + + + + + +A+L + + + L Sbjct: 173 RHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYFDTARWLTFSP 232 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++LR + I +P ++ + L K G ++ + A L++ + Sbjct: 233 RRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFAS 290 Query: 322 VRNLPTLILYPEE 334 + L Sbjct: 291 EQLAKPAFLKDGT 303 >gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537] Length = 442 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 10/262 (3%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V++L P ++VAVSGG DS+ LL AL ++ +++F V++ LR + ++ + Sbjct: 9 VQALQLPDKVIVAVSGGVDSVVLLDAL-----IKTQPQVEFIVAHVNYHLRPQSDNDAHF 63 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+++ + + V W+ Q + AAR+ RY E A I+ AH +DQ Sbjct: 64 VAEIAKKYHVVLRKVDWQGID-QGSVEEAARDFRYCFFEELANEYATNTILVAHHANDQA 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ ++ R K LSGM T + I RP L ++ I+ + Q + WCED Sbjct: 123 ETILLKLVRGG--KLSQLSGMQPTRQVSKTVQIVRPLLPFSKQRIKLYAQQHRLEWCEDS 180 Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D + R +R + + ++ ++ M+ + T ++ I+ Sbjct: 181 TNADSAYTPRNLIRLEILPRLTTINHKAIEHINQTASQIMQQEQMITMQ-ATQYLDDIMQ 239 Query: 252 ISQDILNIDSTLLFYLLRVSAA 273 + +I L +L + Sbjct: 240 SQKSWGDIPEIWLSAVLSIWLQ 261 >gi|312134561|ref|YP_004001899.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL] gi|311774612|gb|ADQ04099.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL] Length = 456 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 131/335 (39%), Gaps = 28/335 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL ++ + + + + ++ Sbjct: 1 MELLEKVKNNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDE---YNLDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 H LR A ++ ++V ++C R I +K A R ARY+ E AK Sbjct: 58 HMLRPEADEDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAK 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I+ I+ H +D +ET ++ R + KG+ + I+RP + RE Sbjct: 118 EISIDRILLGHNKNDVVETFFLNLFRGSSLKGLA-------STPPVRDIIARPLINISRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227 +I F NI + D +N +++R VR + + ++ ++ ++ Sbjct: 171 EIEEFARVNNIPFVVDKTNYSLKYKRNIVRNEILPLIKERFGESVVSTIFRTIEVIREEN 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + I + + L +++V IS + + Sbjct: 231 DQIEELTHNFFQECVQKEDFYYILDIEKAKKLPVFLQRRIIKVILECFNSSISHDMIKEI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 E + L SGK+ ++I+++ + L R Sbjct: 291 EELFS-LSSGKKKVYK--DLIIEKQNDSLVFYRKA 322 >gi|207855754|ref|YP_002242405.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206707557|emb|CAR31831.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 403 Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 139/388 (35%), Gaps = 41/388 (10%) Query: 35 LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP 94 LL L L + AI + H L A+ VR+ VC+R ++ V + Sbjct: 2 LLHQLVLWLE--RHPDVTLRAIHIHHGLSPHAESWVRHCETVCARWQVPLVVERVTLADN 59 Query: 95 QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 G+ A AREARY ++ + ++ TA DDQ ET + +R G+ G Sbjct: 60 GLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGER 117 Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + RP LR R+ + + ++ + W ED SN DD ++R +R L Sbjct: 118 SPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALP 170 Query: 215 ALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 L + F + + L+ + L + I ++ L + + +R + Sbjct: 171 LLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGTLRLSPLMSMSDVRRA 229 Query: 272 A----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR- 323 A + +P ++ER+ + C+ G I R + LW ++V Sbjct: 230 AILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAG 289 Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSM 380 T + +P T L L + + P + + L + Sbjct: 290 QHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGLLHI 342 Query: 381 PSKEGGKPL--------LAPFSRFMTKF 400 + GG+ L + P+ R T Sbjct: 343 VGRHGGRKLKKIWQEQGIPPWRRDTTPL 370 >gi|284008503|emb|CBA75013.1| tRNA(Ile)-lysidine synthetase [Arsenophonus nasoniae] Length = 446 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 20/343 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + + ++++ +LV SGG DS LL AL ++ + + A+ + H Sbjct: 1 MNVDEAALLNQIIKAIGSTRRVLVGFSGGLDSTVLLHALVTLRQT-AVPNLNIRAVYIHH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L + A D + VC L++A + G+ AAAR+ARY E Sbjct: 60 GLNDKADDWAIHCQQVCCDLQVAFYSQPVYIDPTKKGIEAAARDARYRAFREILLPE--E 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I+TA DDQ ET + +R GLS M ++ + + ++ RP L R+ + + Sbjct: 118 IIVTAQHLDDQAETFLLALKRGSGP--AGLSAMPISMPFADS-YLIRPLLSFSRQQLVVY 174 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLI 238 ++ +SW ED SN D R++R +R + + + F + + A + Sbjct: 175 AQKKALSWIEDDSNQDQRYDRNFLRLTI----MPHFNRRWPHFSQAVARSASLCAEQEAL 230 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM--- 291 L S + ++ L +D+ + ++ +A + +I +P ++++ Sbjct: 231 LNELLQDYLSQLVTAEGALQLDALASYSAIKRNAILRRWLSFHRILMPSRVQLKQIWQDV 290 Query: 292 LFLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILYPE 333 + + + VI R LW+ +L + L + Sbjct: 291 ICARPDAEPQFKLANNNVIRRFKQQLWLLPQFNDLTKICLAWQ 333 >gi|30249025|ref|NP_841095.1| hypothetical protein NE1022 [Nitrosomonas europaea ATCC 19718] gi|61216622|sp|Q82VP4|TILS_NITEU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|30138642|emb|CAD84933.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 458 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 27/350 (7%) Query: 3 LSPIESVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 +SP + F +L + VA+SGG DS+ LL L + +++ SA+ V Sbjct: 7 ISPTDITDCFFHNLRAQVRPGDRLTVALSGGVDSVVLLHLLTTFSESM---QLEVSAVHV 63 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTI 117 +H + + + + +C L I S+ K +PQ L A AREARY + Sbjct: 64 EHGISTYSGEWSAFCQSLCDSLAIPLSIHRLKIRRRPQESLEAIAREARYQIFKHI---- 119 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A +M A DDQ+ET+ ++ R KG+ + + + RP L R +I Sbjct: 120 QADYVMLAQHQDDQVETLILQLLRGAGVKGLSAMPTVRLLEPGKTIRLFRPLLNIPRSEI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ +SW D SN D ++R +R + + L +K + A L Sbjct: 180 LNYARLHGLSWVTDESNLDTSYDRNFLRHQILPL-LEQRSPAYRKTLFRSTQHLGEAAHL 238 Query: 238 IPKYLTVHMRSIIAIS----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + + + + + + Q + ++ LLR A I LP +E ++ Sbjct: 239 LDELAEIDAENTLVTNRLSLQGLRKLEPARARNLLRYLLA--QRLIRLPNSTKLEEILRQ 296 Query: 294 L---KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 L + + + I + +LP I VW G Sbjct: 297 LNNIQPDNHFRFIVDTLEIRCHRGLIEFL-PADSLPEPIAP----VVWQG 341 >gi|16799328|ref|NP_469596.1| hypothetical protein lin0251 [Listeria innocua Clip11262] gi|61216704|sp|Q92F56|TILS_LISIN RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|16412680|emb|CAC95484.1| fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria innocua Clip11262] Length = 648 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 21/326 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS LL L S K + ++H LRE A+ E V C Sbjct: 20 SDDKLLVAVSGGPDSFALLHFL---WSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76 Query: 78 SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + V + K Q G+ AR RY + N ++ AH DDQ+E Sbjct: 77 EERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SG+ I RPFL + +I + + + + D S Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYATKHALPYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y K+F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRTQLLPFLSKENPAVYEHFKRFSEETSEDFQFLEELASNLLKKNLIQNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAIC----GGQISLPGYRSMERVMLFLKSGKRGCV 302 + + D N + L + + G I++ + +++ + Sbjct: 254 KQSTLLLSDFKNEANPLQRRAIHLLLMYLYNDDGRVITVNHIYQIIQMIQSENPSSSIDL 313 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTL 328 VI + P Sbjct: 314 PKKLTVIRSYNELHFQFGERHAPPEF 339 >gi|317502958|ref|ZP_07961048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella salivae DSM 15606] gi|315665924|gb|EFV05501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella salivae DSM 15606] Length = 448 Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 149/379 (39%), Gaps = 47/379 (12%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M S + V+ F+ + L + L+A+SGG DS+ LL + + +A+ Sbjct: 1 MLSSFAQKVKAFIAENQLLQPESTYLLALSGGCDSVALLRIMIEL-------NYHVAAVH 53 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112 + LR +K + + ++C L++ V + + AARE RY + Sbjct: 54 CNFQLRNAESKRDEMFCEELCRSLKVPFHRVYFDTKAYASLHHVSIEMAARELRYDYFEK 113 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K I+A I+ AH DD +ET + R +G L GM N I RP L Sbjct: 114 LRKDISADDILVAHHQDDNIETALLNLIRGTGIQG--LLGMK-----PKNGHIIRPLLSV 166 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225 R++I +L + + D SN R ++R + + + +K + Sbjct: 167 SRKEIEQYLSSIHQDYVTDSSNLVADVMRNKIRLEVIPLLKTLNPSVSDNISTTIKHLNE 226 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLP 282 +N+A+ + ++V+ ++ IAI+ L +L+ +L Sbjct: 227 ASNVLNSALKDGQKRVVSVYKQNQIAINIKALQKEVSPEYILYSVL---------SNYSF 277 Query: 283 GYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET-TVWD 339 +E + L +GKR +V DR L I + ++ PEE VW+ Sbjct: 278 SSAQIENIAQSLNASTGKRWYSKTHELVKDRE--TLLIATRTQPTTKVLRVPEEGLFVWN 335 Query: 340 GRYQFQ-NLSDSLIQIGPQ 357 +F+ NLS+ P Sbjct: 336 EHIKFKINLSEITSCFEPS 354 >gi|300857288|ref|YP_003782272.1| putative tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM 13528] gi|300437403|gb|ADK17170.1| predicted tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM 13528] Length = 468 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 30/303 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I + F R ++VAVSGG DS+ LL L+ + R I V+HCL Sbjct: 6 LDTITKNKMFDR----GDKVIVAVSGGPDSICLLHILYVL---REKLDITLCVAHVNHCL 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI 117 R A + YV C L+I + + +A R+ RY+ + + Sbjct: 59 RGKDADGDEEYVKKFCENLKIQFKSLKIDVNHVSQEEGISCESAGRKVRYSFFEKLKDEL 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH +DQ ET+ MR R G GL G+ N++ RP + R++I Sbjct: 119 KAQKIAIAHNANDQAETILMRIMR-----GAGLDGLVGIRPVRDNIY-VRPLICSTRDEI 172 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233 + N++ D +N + + R ++R + + + +F D N Sbjct: 173 EKYCSLNNLNPRIDKTNLETLYSRNKIRLQLIPYIQENFNKDIIKVLNRFSDTIKIDNEY 232 Query: 234 VAMLIPKYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 ++ + + H + IS++ +L ++R+S I G + + ER+ Sbjct: 233 LSYISQEKFKKHCDIKGEKVIISKEAFLEKEAILSRIIRMSLKIVTGNL-----KDFERI 287 Query: 291 MLF 293 + Sbjct: 288 HIL 290 >gi|242240378|ref|YP_002988559.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703] gi|242132435|gb|ACS86737.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703] Length = 448 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 83/406 (20%), Positives = 144/406 (35%), Gaps = 35/406 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + + LVA SGG DS LL + + I+ A V H L A + Sbjct: 17 RQIDADSRFLVAYSGGLDSCVLLHLMMRLQQQL---PIEVRAAYVHHGLNPRADAWADHC 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C RI V++ + G+ A+AREARYA + + ++TA DDQ E Sbjct: 74 RRQCQLWRIPFEVLTVHVDARRGGIEASAREARYAALRTSLQPQ--ETLLTAQHQDDQSE 131 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G+ RP L RE + + + W ED S Sbjct: 132 TFLLALKRGSGPAGLASMAAFSASGAFRQ---RRPLLNMSREQLACYANTHQLRWIEDDS 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N+D+RF+R +R + L L + F + A + ++ + Sbjct: 189 NSDERFDRNFLRLRI----LPLLKQRWPHFPSAVARSAELCAEQEQLLDELLAEALAGMC 244 Query: 254 Q--------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302 + + F LLR A G + +P + R+ L + + Sbjct: 245 NPQGGLAIGALRPLSPARRFALLRRWLASRGAK--MPARDQLSRLWLEVACCREDAEPSL 302 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIGPQS 358 +GR + R L++ + ++ +L + + DG + + S+ + Sbjct: 303 LLGRWQVRRFRGDLYLLPVMNSVKACVLAWQPEIGALPLPDGLGELRLSSEKTGACIRRP 362 Query: 359 YRKADV-----PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 R V SG I+ ++ + + + P+ R T Sbjct: 363 QRHETVTVRFSASGDVHIVGRQHGRHIKKLW-QELGVPPWLRDRTP 407 >gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580] gi|52783924|ref|YP_089753.1| YacA [Bacillus licheniformis ATCC 14580] gi|61216472|sp|Q65PF4|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580] gi|52346426|gb|AAU39060.1| YacA [Bacillus licheniformis ATCC 14580] Length = 476 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 12/216 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ VSGG DSM LL ALH + + A VDH R E ++ ++R+V D C Sbjct: 20 LIAGVSGGPDSMALLHALHHTVPASA----TLIAAHVDHMFRGEESERDMRFVQDYCEAE 75 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ AAARE RYA E K A ++ H DDQ+ET+ Sbjct: 76 GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ + G+GL+G+ +D W+ RPFL+ ++D+ ++ + I + DPSN++ Sbjct: 136 MKMAKGT--VGIGLAGIQPKRRFDSG-WLLRPFLKLSKDDLLAYCKENRIPFRTDPSNSE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 D + R R R V K+FQ + + Sbjct: 193 DDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTE 228 >gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506] gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506] Length = 458 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 152/342 (44%), Gaps = 20/342 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P +L+AVSGG DS+ LL+ + + A +V+H LR A E +V++V Sbjct: 35 PSPQRLLIAVSGGPDSLALLVLASRLPN----LVFAVHAATVNHGLRREADMEAAHVAEV 90 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 RL + H ++W+ L AAAREARY L++E A+ I A+ I+TAH DQ+ETV Sbjct: 91 SQRLGVPHETLTWEGWDGSGNLQAAAREARYRLLAEEARRIGASAILTAHHRGDQIETVL 150 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R E L+GM + + L + RPFL E + + L + I+ +DPSN D Sbjct: 151 QALERGDREN--RLAGMRASRDLEPRLTLVRPFLEIPAEQLWAVLAEAGIASVDDPSNAD 208 Query: 197 DRFERVRVRRFVRD---------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 RF RVR R + +D+ + +++ + + M + Sbjct: 209 RRFTRVRHRHAIAGMSDERIADIMDVQRRAAATRAREEIALAGTVSTMMAHGDLIFTEEG 268 Query: 248 SIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305 +AI D + S LL GG P ++ R+ L+ GC ++G Sbjct: 269 GGVAIGMDAFRVMPSVEAEDLLARVVRAAGGSTRPPERSAVARLAQKLRGRAEGCATTLG 328 Query: 306 RVVIDRRANFLWITRA--VRNLPTLILYPE-ETTVWDGRYQF 344 + N + I R LP++ + V+DGR+ Sbjct: 329 GARLLNDGNVIQIHREYGRTGLPSIAEPWRLDRLVFDGRFDI 370 >gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3] gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3] Length = 464 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 17/249 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL S+ R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + ++ RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 ++ Q +S DPSN +D + R R R + + + L+ + +++ ++ + + Sbjct: 176 EAYCRQMGLSPRRDPSNEEDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235 Query: 235 AMLIPKYLT 243 L L Sbjct: 236 EELAADALN 244 >gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510] gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510] Length = 448 Score = 222 bits (567), Expect = 7e-56, Method: Composition-based stats. Identities = 112/398 (28%), Positives = 174/398 (43%), Gaps = 24/398 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ L + L +++ A++VDH LR + E V +RL Sbjct: 28 IAVGVSGGGDSVALALLLRHWVAEHGG---SLLALTVDHGLRPDSAAEASAVGRTMARLD 84 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + H V+ W+ KP TGL AAAR AR+ L++ + AH DDQ ETV +R R Sbjct: 85 VPHHVLRWEGEKPSTGLQAAARAARHRLLATACAEAGILHLALAHHRDDQAETVLLRLAR 144 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G L+GM D + I RP L + + + + W EDPSN + RF R Sbjct: 145 GSGVDG--LAGMAPVRA-DGPVRIIRPLLGFPHDRLLATCRAEGVGWIEDPSNANPRFAR 201 Query: 202 VRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R+R +D L ++ R + A A L+ T+H I +++ Sbjct: 202 ARLRAASDLLGGEGLDADRLSEVARRAGRARAALEQATAALLADAATIHAEGWITLARGP 261 Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 L+ + + L + A+ GG + P ++ER++ L +G+ G ++G V+ R Sbjct: 262 LSAAPAEIALRALGRTLAVVGGAAAHPVRDEALERLLGTLAAGRGG--TLGGCVVRHRRG 319 Query: 315 FLWITRAVRNLPT-LILYPEETTVWDGRYQF-----QNLSDSLIQIGPQSYRK--ADVPS 366 + I R + L + P +WDGR+ N ++ +G +R+ A + Sbjct: 320 AIMIAREPAAVTERLTVPPGGRVLWDGRFDLWLSPRWNRPVTVAALGAAGWREWVARPAA 379 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTKFDLP 403 G PP + S+PS G LL P FD Sbjct: 380 GRPPDLPVPVRESLPSLWSGTELLDLPMVGGGHGFDAD 417 >gi|126173704|ref|YP_001049853.1| Fis family transcriptional regulator [Shewanella baltica OS155] gi|125996909|gb|ABN60984.1| transcriptional regulator, Fis family [Shewanella baltica OS155] Length = 476 Score = 222 bits (566), Expect = 8e-56, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 134/345 (38%), Gaps = 40/345 (11%) Query: 2 FLSPIES------VRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53 F P+ + +R F+ + L +++A SGG DS L L + Sbjct: 5 FDEPLAAGDLSAHIRAFLVEQPLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL 64 Query: 54 SAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISE 112 + V H L + A ++ + + +V ++ P+ L A AR+ RY I Sbjct: 65 --VYVHHGLSDNADSWAQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIER 122 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 H +++TAH DDQLET+ + +R + KG+ G + L RP L Sbjct: 123 HLSAN--DVLLTAHHEDDQLETILLALKRGHGPKGLAAMGQVQALAQGRQL---RPLLDI 177 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 RE I ++ Q+ + ED SN DD+++R +R L + ++ + + Sbjct: 178 SREQIEAYAKQQGLVHIEDESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASR 230 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLL--------------FYLLRVSAAICGGQ 278 + A+ + T+ ++ + + + L + I Sbjct: 231 SAALCAEQQATLDVQVSERLPLWLTQAPYHTQSVFKLDGFAEQSADWQALLLRGFIESQG 290 Query: 279 ISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITR 320 +LP + +++ L K + + +G I R AN +++ + Sbjct: 291 FALPSKVQLNQIITQVLTAKDDAKVHIRVGECEIRRFANQVYLFK 335 >gi|331089912|ref|ZP_08338804.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium 3_1_46FAA] gi|330403144|gb|EGG82705.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium 3_1_46FAA] Length = 512 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 24/300 (8%) Query: 15 SLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 ++ +++A VSGG+DS+ LL+ L S+ R + V+HCLR A D + Y Sbjct: 45 HMIEHGDVVIAGVSGGADSVCLLLTLCSL---REKFGFEVKVCHVNHCLRGAAADADEEY 101 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C L + V V K + A RE R + T I TAH Sbjct: 102 VKKLCGELGVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHR 161 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R G G+ G+C + N RP L R+ I S+L +R I W Sbjct: 162 DDQAETVLLNIAR-----GTGIRGLCGIVPVRDNR--IRPLLSLTRDRIESYLRERGIVW 214 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY-LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 D +N +D + R R+R V + + + +K + L + YL +R Sbjct: 215 RVDATNEEDDYTRNRIRHKVLPVLENEVNDQTVKHLESLSRQAEEICE-----YLDYSVR 269 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRGCVSIG 305 + + D + + S P R +++ + ++ G++ S Sbjct: 270 QLWKTCVSVRKKDQEQKESPIELVIEKESFFQSFPAVRKLLLQKCIGKVRGGQKDLTSAH 329 >gi|320540048|ref|ZP_08039704.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str. Tucson] gi|320029897|gb|EFW11920.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str. Tucson] Length = 442 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 89/403 (22%), Positives = 152/403 (37%), Gaps = 31/403 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L +LVA SGG DS LL L + + + A+ V H L A + Sbjct: 11 AHQLGEHRQVLVAFSGGLDSTVLLHLLAQLRQQ--HPEFQLRAVHVHHGLSAFADTWADH 68 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C+ R+ +V + G+ AAAR ARYA + K +++TA DDQ Sbjct: 69 CGRQCAAWRVPLTVQRVQVDARAGGIEAAARTARYAAFNATLKA--DEILITAQHLDDQS 126 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R G+ C + + + RP L C R + ++ Q +SW +D Sbjct: 127 ETFLLALKRGSGPAGLSAMAACGRL---ADHVLLRPLLGCSRLRLEAYAQQHQLSWIDDD 183 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN + RF+R +R V L L L+ F + + A L+ + L +R++ Sbjct: 184 SNQNPRFDRNFLRLQV----LPLLNLRWPHFTSAVARSASLCAEQEQLLDELLADQLRTL 239 Query: 250 IAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301 +A +++L F LLR I ++LP ++ + + Sbjct: 240 LAEDNSLVIEELLGCSPACRFALLRRW--IARHDVTLPSREQLQHLWDEVALSRVDAVPR 297 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +G I R L++ + NL + L T L D L + + Sbjct: 298 LQLGTYQIRRFHGRLYLQPLMANLRDIRLNWSRTA-------PLTLPDGLGHLISGKGKV 350 Query: 362 ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404 ++ R + + G+ P + + D+P Sbjct: 351 HLRSPQPAQQVSVRFSAQGSVRIVGRAHSRPIKKLWQELDVPP 393 >gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Desmospora sp. 8437] Length = 477 Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats. Identities = 91/418 (21%), Positives = 148/418 (35%), Gaps = 36/418 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L ++ L + +LV VSGG DS LL AL + + K +A+ V+H Sbjct: 3 MLEQMKKTILAHHMLPEGSSVLVGVSGGPDSTALLHALSRIAPTHGW---KVAAVHVNHG 59 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKT 116 LR E ++ + +YV C +I V V ++ A AR RYA A+ Sbjct: 60 LRGENSRGDEKYVRTCCEHWQIPCHVEQVGVRQVLAQKGGNKQAVARSLRYAAFLRVARR 119 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A + AH DDQ+ET+ MR R GL+G+ T + L I RP L R D Sbjct: 120 VGAECLALAHQADDQVETLLMRLIRGTGP--AGLAGIPATREWR-GLRIVRPLLEVWRSD 176 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVK 229 + ++ + ++ D SN D R R R+R + L+ D Sbjct: 177 VEAYCTRYGLTPRLDESNRDPRHTRNRIRHHLLPGLESYNSRVKEVLFQLAHLAADEEKH 236 Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAIC-----GGQISLPG 283 + V + +T + + + L + L ++++ ++L G Sbjct: 237 WASLVEKEARRVITDSGQQWFEVDTRAFLELGVALQRRVIKLILNCLVEDDENETVTLDG 296 Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV---------RNLPTLILYPEE 334 + R+ G V +R L I +A + PT + P E Sbjct: 297 VERIRRL-AMSSDPSGETALPGGVRAERIYRQLRILKAASAARDEEGEKMAPTRLPIPGE 355 Query: 335 TTVWDGRYQFQNLSDSLIQIGPQ-SYRKADVPSGIPPIIAQR-ALSSMPSKEGGKPLL 390 GR + S + D P + +R P G + Sbjct: 356 VRYPAGRIRVWTDSRPPFSPTKDRALFDLDQLEAAPVVRPRRPGDRVQPLGMNGTKKV 413 >gi|28899075|ref|NP_798680.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633] gi|153839744|ref|ZP_01992411.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio parahaemolyticus AQ3810] gi|260362390|ref|ZP_05775345.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030] gi|260876843|ref|ZP_05889198.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034] gi|260897275|ref|ZP_05905771.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466] gi|61217347|sp|Q87MF4|TILS_VIBPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28807299|dbj|BAC60564.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633] gi|149746728|gb|EDM57716.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio parahaemolyticus AQ3810] gi|308085351|gb|EFO35046.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466] gi|308091370|gb|EFO41065.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034] gi|308113972|gb|EFO51512.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030] Length = 438 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 28/335 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VA SGG DS + L + R + A+ V H L E A + Sbjct: 21 KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I+ SV ++ + AREARY ++ H L++T DDQ+ET + Sbjct: 78 GISCSVERVNLDTNSGESIELLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG LS M +++ + + RP L +RE I + + W ED SN D R+ Sbjct: 136 KRGSGPKG--LSSMAESMPFA-GGTLVRPLLNTKREQIEATAKNIGLEWVEDESNQDTRY 192 Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +R + +++ +++ L + + L+ +++ +++S D Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLGSVFARALQADLSLSIDE 252 Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312 L I S L L+R+ + ++P + + + + + + I R Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQTQLRLIWQEVALAQQDANPKLKLKQGEIRRF 310 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 N L+ + + + T W G Q Sbjct: 311 QNKLYW----------VTHRADVTSWQGHIQIDEP 335 >gi|332994188|gb|AEF04243.1| cell cycle protein MesJ [Alteromonas sp. SN2] Length = 437 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 129/326 (39%), Gaps = 25/326 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S P ++VA SGG DS LL ALH S A+ + H L A +R+ Sbjct: 20 SFRAPPLLVVAYSGGVDSSLLLHALHVFRKQTSTP---VHAVHIHHGLSNNADTWLRHCQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +L I + + L A AR+ARY ++ E T N +++ +DQLE Sbjct: 77 SECDKLSIPLTHYHVAVDNGARKSLEAEARDARYKVLHEFCHTHNG-VLLLGQHAEDQLE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV ++ +R +G+ G + + RP L ++ DI + ++ W D S Sbjct: 136 TVLLQLKRGAGPQGLSGMGAQQ---WRNGVLTLRPMLALQKSDIVDAANRLDLQWVNDES 192 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250 N DDR++R +R + + AL + + + ++ A L+ + +++ + Sbjct: 193 NADDRYDRNFLRNQI----IPALSERWPQLSNTALRSAQLCAEQTALVTEQAEIYLSQCL 248 Query: 251 AIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVS 303 ++L + +LR LP + ++ ML K VS Sbjct: 249 VTDTQLKGAELLTLSKNWQRAVLRQWF--SKQSALLPSQAQLMQIENMLMAKQDAAPEVS 306 Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL 328 + + W+++ +P Sbjct: 307 FSWGKLARFNNDLYWLSKRNTQVPQA 332 >gi|153815236|ref|ZP_01967904.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756] gi|317502308|ref|ZP_07960477.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium 8_1_57FAA] gi|145847495|gb|EDK24413.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756] gi|316896264|gb|EFV18366.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium 8_1_57FAA] Length = 488 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 24/300 (8%) Query: 15 SLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 ++ +++A VSGG+DS+ LL+ L S+ R + V+HCLR A D + Y Sbjct: 21 HMIEHGDVVIAGVSGGADSVCLLLTLCSL---REKFGFEVKVCHVNHCLRGAAADADEEY 77 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C L + V V K + A RE R + T I TAH Sbjct: 78 VKKLCGELGVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHR 137 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R G G+ G+C + N RP L R+ I S+L +R I W Sbjct: 138 DDQAETVLLNIAR-----GTGIRGLCGIVPVRDNR--IRPLLSLTRDRIESYLRERGIVW 190 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY-LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 D +N +D + R R+R V + + + +K + L + YL +R Sbjct: 191 RVDATNEEDDYTRNRIRHKVLPVLENEVNDQTVKHLESLSRQAEEICE-----YLDYSVR 245 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRGCVSIG 305 + + D + + S P R +++ + ++ G++ S Sbjct: 246 QLWKTCVSVRKKDQEQKESPIELVIEKESFFQSFPAVRKLLLQKCIGKVRGGQKDLTSAH 305 >gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341] Length = 497 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 Q I L LL+ + A + +P R M +++ L ++ Sbjct: 281 QQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|319638353|ref|ZP_07993115.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102] gi|317400102|gb|EFV80761.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102] Length = 451 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 130/319 (40%), Gaps = 26/319 (8%) Query: 19 PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H + V +SGG DS+ LL L + R F + A+ V H L A ++ D Sbjct: 21 PSHTVFEVGLSGGLDSVVLLHLLDRM---REFRRFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL +A V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CQRLNVALRVCRVNVEKHGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + R +GM + + ++ +W RP L R+++ + Q + + ED SN D Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPLLAFSRQELAEYAQQWRLPFVEDESNED 191 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + R +R L ++ F+ + + + IS D Sbjct: 192 SGYLRNWMRNQ----ALPQWQQRIPNFEQQICANIRLLQEDLQLLDELAESEYQRISPDG 247 Query: 257 L-------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRV 307 + L LL + SLP Y S+ L++ ++ +S+ G + Sbjct: 248 IFSISLWRQCTPLLRRRLL--WYFLRKQTESLPSYHSIADFARVLETAEQAQLSLPNGEL 305 Query: 308 VIDRRANFLWITRAVRNLP 326 V R F+W + LP Sbjct: 306 VAYRDQLFIWQENEFQRLP 324 >gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2] gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2] Length = 469 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 12/216 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++ VSGG DSM LL ALH + + A VDH R E ++ ++R+V D C Sbjct: 13 LIAGVSGGPDSMALLHALHHTVPASA----TLIAAHVDHMFRGEESERDMRFVQDYCEAE 68 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V ++ AAARE RYA E K A ++ H DDQ+ET+ Sbjct: 69 GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 128 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ + G+GL+G+ +D W+ RPFLR ++D+ ++ + I + DPSN++ Sbjct: 129 MKMAKGT--VGIGLAGIQPKRRFDSG-WLLRPFLRLSKDDLLAYCKENRIPFRTDPSNSE 185 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 D + R R R V K+FQ + + Sbjct: 186 DDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTE 221 >gi|154684586|ref|YP_001419747.1| YacA [Bacillus amyloliquefaciens FZB42] gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42] Length = 472 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 127/333 (38%), Gaps = 29/333 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV F ++ I+ VSGG DSM LL L+ S A VDH Sbjct: 1 MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGHSSV----IIAAHVDHQF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R +++++++V C I V K + AAAR+ RY + Sbjct: 57 RGPESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFEDLMTKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ MR + G GL+GM + W+ RPFL +++I Sbjct: 117 QAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASG-WLIRPFLYAAKDEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + Q +S+ D SN D + R R R+ V H K FQ + + Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTED-EQY 232 Query: 238 IPKYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRV-SAAICGGQISLPGYRSM 287 + M +I D +L + L +++ + S R + Sbjct: 233 LQSLTKERMNKVITSKSDTSVEVNSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARHI 292 Query: 288 ERVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317 ++ + + ++G G V+ L+ Sbjct: 293 QQFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 325 >gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426] gi|61216398|sp|Q5L3T3|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 464 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 17/249 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL S+ R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + ++ RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 ++ Q +S DPSN D + R R R + + + L+ + +++ ++ + + Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235 Query: 235 AMLIPKYLT 243 L L Sbjct: 236 EELAADALN 244 >gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942] gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942] Length = 472 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 147/370 (39%), Gaps = 32/370 (8%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + SV+ F + A I+V VSGG DSM LL LH+ S A VDH Sbjct: 1 MNSVKDFFEKYNLHLEGATIIVGVSGGPDSMALLNFLHTRFGRASV----IIAAHVDHSF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R +++++R+V C RI V S + AAARE RY + Sbjct: 57 RGAASEEDMRFVQAYCKTERITCETVKMDVSAYAEMNRLNKQAAARECRYRFFKDLMVKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ MR + G GL+G+ ++ W+ RPFL +ED+ Sbjct: 117 QADYLALAHHGDDQVETMLMRLAKGTL--GAGLAGIQPVRKFETG-WLIRPFLSITKEDV 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ L+ ++ + D SN D + R R R+ V + +KFQ + + L Sbjct: 174 LTYCLEHDVRYRTDESNAKDDYTRNRFRKAVLPFLKQESHDVHRKFQKVSESLTEDEQYL 233 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGY---RSME 288 + I + S+ + ++S L L R + + +P R ++ Sbjct: 234 QSLTKDEMNKVITSQSETSVELNSAALLALPMPLQRRGVQLILNYLYENVPSSFSARHIQ 293 Query: 289 RVMLFLKSGKRGC---VSIGRVVIDRRANFLW-----ITRAVRNLPTLILYPEETTVWDG 340 + + + K+G G V+ L+ + V + ET + G Sbjct: 294 QFLEWAKNGSPSGVLDFPNGLKVVKSYQTCLFTFEQLQCKEVPFEYQISGAAGETVILPG 353 Query: 341 RYQFQNLSDS 350 Q D+ Sbjct: 354 GSQITVERDA 363 >gi|254786815|ref|YP_003074244.1| tRNA(Ile)-lysidine synthase domain containing protein [Teredinibacter turnerae T7901] gi|237683861|gb|ACR11125.1| tRNA(Ile)-lysidine synthase domain containing protein [Teredinibacter turnerae T7901] Length = 436 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 90/409 (22%), Positives = 146/409 (35%), Gaps = 36/409 (8%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 ++ + L + +A SGG DS LL + + A+ V+H L A+ Sbjct: 7 LQAYETQLRDAKGVWIAFSGGLDSTVLLHQAAQLGLEH------LQAVHVNHQLSPNAQA 60 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 R+ D + L + +V + G+ AAR+ RY + SE K +++TAH Sbjct: 61 WQRHCEDTANSLGVPLTVRTVSVDDFGGGVEDAARKLRYQIFSELLKP--GEILLTAHHA 118 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +DQ ET+ R R KG L G+ + + RPFL R + ++ + W Sbjct: 119 NDQAETLIYRLMRGAGLKG--LCGVPRSRNLGRRKTLVRPFLDVARPQLEAWADDHAVRW 176 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +D SN D F+R +R V +++ + + +L Sbjct: 177 IKDESNDDTSFDRNYIRHEVMPALSARWPGAIERIATSASLLAESQELLDAYLDDDLNAC 236 Query: 249 IIA--------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGK 298 + I LN +LLR I +P + + R +L Sbjct: 237 KLRKERVGESLILNVFLNFSEVRQHHLLRYW--IGRSDCLMPSQQHLAEVRKLLLAAEDA 294 Query: 299 RGCVSIG-----RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG--RYQFQNLS--- 348 + VS G I R N L++ L + WDG + Q N S Sbjct: 295 KPEVSWGPAGVRGGSIYRYQNRLYL---APRLNYAVEREACYKNWDGVTKLQLGNFSIVG 351 Query: 349 -DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRF 396 + + + P +YR G A R S K + L P+ R Sbjct: 352 KPAEVGLAPGNYRVLFREGGERCQPADRQNSQTLKKLLQEYRLEPWLRD 400 >gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012] Length = 497 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 Q I L LL+ + A + +P R M +++ L ++ Sbjct: 281 QQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|160886327|ref|ZP_02067330.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483] gi|156108212|gb|EDO09957.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483] Length = 426 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE F ILVA+SGG+DS+ LL LH+ A + LR Sbjct: 10 IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ I + + ++ + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH DD +ET+ + R G+ + N I RP L RE+I + Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINREEIIRY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + D +N +D + R ++R + + + L D+ N Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291 + K +T I + ++ +LF +L ++ + Sbjct: 232 IEETKKKIITAEGIRICDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 L + GK+ C RV+ DR ++ L P + Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319 >gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635] gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635] gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645] gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630] Length = 497 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ S A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKESPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104] gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22] gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104] gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22] gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B] gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A] Length = 497 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860] gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860] Length = 497 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + WK+ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|119946581|ref|YP_944261.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37] gi|119865185|gb|ABM04662.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37] Length = 460 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 18/305 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL + + K A ++H L + A + ++C+ L + Sbjct: 30 IALSGGLDSVVLLHLFTRLRA--FDKKYSLCAHHINHGLSDNAAHWQLFCENLCASLAVD 87 Query: 84 HSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 K +T L A ARE RYA ++ ++ + ++TAH DDQLETV + +R Sbjct: 88 FCCSPVILEKKNRTSLEALAREKRYACLTG--NLLDNSYLITAHHQDDQLETVLLALKRG 145 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL G+ + RP L R+ + ++ + W ED SN D F+R Sbjct: 146 SGS--TGLQGIQKMQKLQKG-HLIRPLLNFSRQQLAAYAELFQLDWVEDESNQDQDFDRN 202 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNID 260 +R+ + + L + M K + L+ + ++ S Q +L I+ Sbjct: 203 FIRQTITPL-LKERWPGMGKAVARSANICQEQQQLLDEIALADFNQLVEFSLNQQVLPIE 261 Query: 261 STLLFYLLRVS----AAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRA 313 + R + Q+ P + ++ + + + + R Sbjct: 262 DLAALSIGRRNNLLRFWFKKNQLDYPSAKQLQALWTDVALAIIDAQPLLQFKGYSVRRYR 321 Query: 314 NFLWI 318 N+L++ Sbjct: 322 NYLYL 326 >gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61] gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52] gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61] gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52] Length = 464 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 17/249 (6%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L A ++V VSGG DS+ LL S+ R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI V G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + ++ RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 ++ Q +S DPSN D + R R R + + + L+ + +++ ++ + + Sbjct: 176 EAYCRQMGLSPRRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235 Query: 235 AMLIPKYLT 243 L L Sbjct: 236 EELAADALN 244 >gi|260173564|ref|ZP_05759976.1| putative cell-cycle protein [Bacteroides sp. D2] gi|315921832|ref|ZP_07918072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2] gi|313695707|gb|EFS32542.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2] Length = 426 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE F ILVA+SGG+DS+ LL LH+ A + LR Sbjct: 10 IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ I + + ++ + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH DD +ET+ + R G+ + N I RP L RE+I + Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINREEIIRY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + D +N +D + R ++R + + + L D+ N Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291 + K +T I + ++ +LF +L ++ + Sbjct: 232 IEETKKKIITAEGIRISDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 L + GK+ C RV+ DR ++ L P + Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319 >gi|325295220|ref|YP_004281734.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065668|gb|ADY73675.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 454 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 40/366 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +E+ + + +LVA+SGG DS+ LL L + KI +A ++H Sbjct: 1 MLKDKVENTIKNFSLISENSKVLVALSGGPDSVTLLHILLQLKEKL---KIDIAAAHLNH 57 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI 117 LR E ++ + +V +CS I K + A ARE RY + E K I Sbjct: 58 MLRGEESERDENFVKKLCSDWGIPLFTKRENIKEISKGKNIEAVAREVRYRFLEETLKKI 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 N I T HT D +ETV + + KG + I RP RE+I Sbjct: 118 NGDYIATGHTASDLVETVILNLTKGTGIKGF-------RGFFPKREKIIRPLFEVTREEI 170 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +++ + NI + D SN FER +R + + A+ +++ + Sbjct: 171 ENYIKENNIPFVVDSSNLKTEFERNLIRIEVIPVLKKINPKLEEAVLRNTSILREIEDYI 230 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSME 288 N V L+ KYL+ ++ I + L +L L++V I G +S +E Sbjct: 231 NKEVENLLRKYLS---KNQFCIPLEKLKKLEPVLRKELLIKVFKTITGRTLSYKKLEFIE 287 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR----------AVRNLPTLILYP---EET 335 V+ + + VI + I + ++ +P+ + P E Sbjct: 288 NVIKKKEYKELKLTR--GYVIFKDQENFCIEKENGKEKEYFIEIKEIPSKVETPMGIVEF 345 Query: 336 TVWDGR 341 +WDG+ Sbjct: 346 DLWDGK 351 >gi|303240184|ref|ZP_07326704.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2] gi|302592275|gb|EFL62003.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2] Length = 465 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 137/352 (38%), Gaps = 40/352 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 ++V VSGG DS+ LL L + R + A+ ++H LR + + YV + Sbjct: 17 KGDRVVVGVSGGPDSVCLLHVLWRL---RKDFDLYIVAVHINHMLRGSESCRDENYVKSL 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 CS L I + K L A RE RY A ++ A+ I AH +DQ Sbjct: 74 CSELEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIAVAHNKNDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV M R G L GM I RP L R +I ++ + +++ D Sbjct: 134 ETVLMNIIRGSGLDG--LKGMDYIR-----GRIIRPLLDIERNEIEAYCRENSLNPITDS 186 Query: 193 SNTDDRFERVRVR-------------RFVRDID-LHALYLKMKKFQDLRVKVNNAVAMLI 238 SN +D + R ++R FV+ +D L+ L F D ++K + A+L Sbjct: 187 SNLEDIYSRNKIRLNVIPYIDTLFGCNFVKSVDRLNRLVKDDIDFIDGKIKKSYYAAVLR 246 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + V + + I + + ++R + G + +ERV+ + +G+ Sbjct: 247 KENEEVEL-----LLGKIKKMHIAVKRRIIRKAINEVKGNVKGIESLHIERVLNMIDNGR 301 Query: 299 RG-CVSIGRVVIDRRANFLWITRAVRNLPTL-----ILYPEETTVWDGRYQF 344 G + + + + + + + + + P T D R+ Sbjct: 302 VGSRLDLPGIKVGKSYESIKFYKDEKPADKFDFVASLCIPGITKSRDNRHLI 353 >gi|257871355|ref|ZP_05651008.1| PP-loop family protein [Enterococcus gallinarum EG2] gi|257805519|gb|EEV34341.1| PP-loop family protein [Enterococcus gallinarum EG2] Length = 461 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 12/251 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V A L+AVS G DSM LL + + +FG V+H LRE + DE ++ D Sbjct: 16 VEDATCLLAVSTGVDSMVLLHVIEELFQQGTFG-----VAHVNHNLREASDDEAAFLKDY 70 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C I + W++ PQ G+ AAARE RY +E + ++TAH DDQ+ET+ Sbjct: 71 CQTRGIPYYERVWQDP-PQNGIEAAAREFRYHFFAETMTLQSYDWLLTAHHADDQMETML 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R+ + SG+ + N ++ RPFL +E+IR + +R I++ ED +N Sbjct: 130 MKMVREGRLQ--NASGIKRKQPFG-NGYLIRPFLTIAKEEIRDYARRRGIAYFEDETNQQ 186 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255 F+R R+R + + FQ L ++ LI K + +I+ + Sbjct: 187 TLFQRNRLRHQAVPLLKAENPRALDHFQQLSQEMI-YADQLIKKQQADWLATILHEEAEG 245 Query: 256 -ILNIDSTLLF 265 LN+D F Sbjct: 246 YFLNLDELAAF 256 >gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 485 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 28/333 (8%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR F R + I+VAVSGG DS LL + + D++ G ++ + H LR Sbjct: 11 EQVRRFGRQEQLWLPGDVIVVAVSGGVDSTVLLHIMKEIAGDKALG-LQLICAHLHHGLR 69 Query: 64 -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + A + +V ++ RL I V + L AARE RY + + A+ Sbjct: 70 GDEADRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYG 129 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A+ I AH DDQ ETV MR R GL+GM + N+ + RP LR + D+ Sbjct: 130 ASSIALAHHADDQAETVLMRLLRGSGP--SGLAGMRPKR-REKNVELIRPLLRIYKTDLL 186 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + +++ ED SN D R +R V + L V L Sbjct: 187 QACRESGLAYVEDSSNLDKEMTRNSIRLDVLPFLGQYNGQLPESLNRLAVLTAAEDDYLH 246 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLF----YLLRVSAAICGGQISLP------GYRSME 288 + + ++ ++ IL+ ++ L L R + LP + +E Sbjct: 247 QEAMRLY-AELVRTEDGILSFEAPLFSGLHVALQRRLIKLILN--YLPLSTEDRDFVKVE 303 Query: 289 RVMLFLKSGKRGCVSI---GRVVIDRRANFLWI 318 + + S+ G V R + + Sbjct: 304 AIRQGTIQDRPTTWSLDLGGGVKCVREYDRIRF 336 >gi|332140486|ref|YP_004426224.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550508|gb|AEA97226.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype'] Length = 441 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 74/324 (22%), Positives = 121/324 (37%), Gaps = 23/324 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L ++VA SGG DS LL A V+ R A+ V H L E A R+ Sbjct: 24 ELPLQTPLVVAYSGGVDSSVLLQA---VIEYREQYNGPIHAVHVHHGLSENADSWARHCE 80 Query: 75 DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C + + + + + A AR+ RY + K I +++ +DQLE Sbjct: 81 LQCRLEDVEFHLHRVEVDTSARKSIEAEARKVRYNALLAVCKRIGG-VLLLGQHAEDQLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV ++ +R +G+ G + Y N I RP L + +I +F + W +D S Sbjct: 140 TVLLQLKRGAGPQGLAGMG---EVQYRGNTLIMRPMLSLDKAEIVTFADNEMLQWVDDES 196 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N + F+R +R + + L + + + A R Sbjct: 197 NQQNSFDRNFLRNEI----IPHLLDRWPQLTKTVGRSAALCAEQSELVNDSAQRYFEDCK 252 Query: 254 QDILNIDSTLLFYLLRVSAAI-------CGGQISLPGYRSMERVMLFLKSGKRGCVSI-- 304 + L +D L L R A+ GQ+S P E+V+L L++ + Sbjct: 253 RTNLRLDGKKLTSLSRPWQAMVIRAWFKAQGQLS-PSKAQAEQVLLMLEAKHDATPEVNF 311 Query: 305 -GRVVIDRRANFLWITRAVRNLPT 327 VI + W+ AV + Sbjct: 312 KWGKVIRFDGDLYWVVNAVHDAEP 335 >gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342] Length = 497 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893] gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893] Length = 416 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 28/381 (7%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90 DS+ LL + + + SAI ++H L+ A D R+ D+C L + + Sbjct: 2 DSVLLLHVTAYLYAHSG----QVSAIHINHQLQPNADDAERFCEDICRELGVPLDIRRVI 57 Query: 91 NSKPQT-------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 S +T G+ AAR ARY + E L++ AH DDQ ETV R R Sbjct: 58 VSSRETPEIDTSGGVEEAARNARYQVFEEILAP--GELLLMAHHGDDQAETVLFRLLRGT 115 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+G GM T + RP L R ++ ++ + I W EDPSN D+RF+R Sbjct: 116 GVVGLG--GMPITRPLGAG-RLYRPLLDFSRAELHAWAAEHGIEWMEDPSNIDERFDRNF 172 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL--NIDS 261 +R + + + + L K +H + S ++ + + Sbjct: 173 LRASIFPLLKSRWPSLISRMGHT-AHSCREADELAGKLAEIHFQQCAGPSGELCLSAVGA 231 Query: 262 TLLFYLLRVSAAICGGQIS----LPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 L + G + + + + L + + + VI R L+ Sbjct: 232 LSLAEQKNLLRWWVGHFHYQSPTMADWSQVLQDFLDSPADREPELRGAGFVIRRFRGCLY 291 Query: 318 ITRAVRNLP--TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQR 375 + LP +L P+ +W G ++ L+ S P + +G I Sbjct: 292 LVPEFTELPAGKPVLIPD-RALWWGEWRLT-LAASGKPKTPAPEIRVSTRAGGERIRPAP 349 Query: 376 ALSSMPSK-EGGKPLLAPFSR 395 S K + + P+ R Sbjct: 350 GGPSKSLKNWLQEKNVPPWER 370 >gi|313201479|ref|YP_004040137.1| tRNA(ile)-lysidine synthetase [Methylovorus sp. MP688] gi|312440795|gb|ADQ84901.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. MP688] Length = 439 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 22/338 (6%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 ++ F+ +LVA+SGG DS LL L ++ ++ I+ SA+ V H L A Sbjct: 5 LQQFITQHHIEGRLLVALSGGLDSCVLLHLLATLPNN---PGIRLSAMHVHHGLSPHADQ 61 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +C+ I VV + + GL AAAR RY + +A ++ AH Sbjct: 62 WAEHCQRLCASHAIPLQVVHVQVPRDSGQGLEAAARHLRYEA----MRAAHADYVVLAHH 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV ++ R G G+ G+ +D + RP L R + + Q + Sbjct: 118 QDDQAETVMLQLLR-----GAGMRGLAAMASHDAQQRLLRPLLDISRAQLAEYAAQHQLE 172 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVH 245 W ED SN D ++R R+ V + K L ++ M + + Sbjct: 173 WVEDESNQDTHYDRNFCRQQVLPLLEQRFPGAGKALARSALHAAEAESLQMALAELDAAD 232 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCV 302 A++ L L + LP ++ R +L + + Sbjct: 233 TLRGNALNVARLQALGETRARNLLRW-WLSSRLRYLPHREHLQEMLRQLLTAADDAKLAL 291 Query: 303 SI---GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + + + R ++ ++ I++ ++ V Sbjct: 292 LLDGEQGLWLRRYRGHAYVVAQRKSADLDIVWDQQPVV 329 >gi|302876588|ref|YP_003845221.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] gi|307687263|ref|ZP_07629709.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] gi|302579445|gb|ADL53457.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B] Length = 462 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 61/309 (19%), Positives = 119/309 (38%), Gaps = 24/309 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++VA+SGG DS+ LL + + + + V+HC+R A D + YV ++ +L Sbjct: 24 VIVALSGGPDSVVLLHVFNEL---KEVYNLTLYVAHVNHCIRGDAADSDEAYVIELSKKL 80 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V+ K + A RE RY E + A I AH +DQ ETV Sbjct: 81 GIEFFVLREKVEEIARDRGISSEMAGREVRYKFFEELKHKLKADKIAVAHNANDQAETVL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G + I + RP + R +I + + ++ D +N + Sbjct: 141 MRIMRGSGTEG------IEGIKPVRDGVYIRPLIDVSRSEIERYCEENGLNPRIDATNLE 194 Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLIPK----YLTVHMRS 248 + R +VR + + + + D K N + + + Y V Sbjct: 195 TIYSRNKVRLELIPYIQENFNSDIINTLVRLSDTVKKDNEYLEAIANEKYKSYCEVRENK 254 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGRV 307 +I IS++ N ++L ++R + + + + ++ ++ + + + Sbjct: 255 VI-ISKNAFNEPESILTRVIRKAYNTVAKGLFNFEKKHIYDIIKLQRNNSGKSIDLLHGI 313 Query: 308 VIDRRANFL 316 + + Sbjct: 314 IAYNSYGHI 322 >gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus faecalis OG1RF] Length = 497 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137] Length = 497 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134] gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134] Length = 497 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368 >gi|154505539|ref|ZP_02042277.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149] gi|153794197|gb|EDN76617.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149] Length = 469 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 44/376 (11%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ L ++ +SGG+DS+ LL L + F A+ V+H LR Sbjct: 3 KKVLNFIQKYHMLQKEDKVIAGISGGADSICLLFVLLRLQEKIGF---DVIAVHVNHGLR 59 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E AK + R+ C + V V ++ + + A R R E Sbjct: 60 GENAKRDERFTETFCRERNVPCIVYHENVKEIAAQKKLSVEEAGRLVRRKAFEEVRIRYG 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I AH +D ET+ + R +G+ + + +N ++ RP L R++I Sbjct: 120 GTKIALAHHQNDNAETMLLNLARGTGIRGL-------SGIRPVNGYMIRPLLGINRKEIE 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKV 230 +L + +S+CED +N D + R R+R + + + + M++ +R + Sbjct: 173 YYLKEHQLSYCEDETNAGDEYTRNRIRHQILPMLEEQVNRQAVRHMNETMEQLNQIRDYL 232 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMER 289 + + ++ + + + D + +++ + G L Sbjct: 233 EREIEAHCRCVVRQEEEGLLLLWDEWMQCDPVIQNGIIQKCLENLAGTGKDLVSVHVAAV 292 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWI----------TRAVRNLPTLILYPEET---- 335 LF K R + +R + + R +P + + Sbjct: 293 AELFEKQSGRKRNLPYNICAERNYEGILLIKQTAERQTECREELIIPGITRLKDRNLRIC 352 Query: 336 -TVW--DGRYQFQNLS 348 T+W D + + + Sbjct: 353 CTIWEKDKNFSIEQIP 368 >gi|299146811|ref|ZP_07039879.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23] gi|298517302|gb|EFI41183.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23] Length = 426 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE F ILVA+SGG+DS+ LL LH+ A + LR Sbjct: 10 IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ I + + ++ + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH DD +ET+ + R G+ + N I RP L R++I + Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINRKEIIRY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + D +N +D + R ++R + + + L D+ N Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291 + K +T I + ++ +LF +L ++ + Sbjct: 232 IEETKKKIITAEGIRISDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 L + GK+ C RV+ DR ++ L P + Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319 >gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583] gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11] gi|61216623|sp|Q839B3|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583] gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11] Length = 462 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333 >gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248] gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248] gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017] gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027] Length = 497 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|270159842|ref|ZP_06188498.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968] gi|289165400|ref|YP_003455538.1| cell cycle protein MesJ [Legionella longbeachae NSW150] gi|269988181|gb|EEZ94436.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968] gi|288858573|emb|CBJ12454.1| cell cycle protein MesJ [Legionella longbeachae NSW150] Length = 460 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 149/401 (37%), Gaps = 58/401 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++V SGG DS LL AL + K A+ V+H + A + C +L Sbjct: 19 QLIVGFSGGLDSTVLLHALAA----HPILLDKIVAVHVNHGINANADFWQEHCKQFCQKL 74 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 ++ S + + + AR ARY++ S K + ++ H DDQ ETV ++ Sbjct: 75 GVSFRAQSVQFDR-SANIEEGARIARYSVFSALVKEQDC--LILGHHLDDQAETVLLQLF 131 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ + + RPFL RE + + + W ED SN D + Sbjct: 132 RGAGVDGLAAIPEFAQFGFGR---LFRPFLHYYREQLEHYAFLHQLDWVEDESNCDITYS 188 Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R+ + + L + + + + L L+V ++ + L Sbjct: 189 RNYLRQEIIPLLKNKWPGLVGNIARTASHCQQAKRNLDALAISDLSVKGVKNKSVLKSTL 248 Query: 258 NID-----------------STLLFYLLR----------VSAAICGGQISLPGYRSMERV 290 +I +TL L+ + + Q+ LP + R+ Sbjct: 249 SIGLGMDINERELGENILTTNTLAIESLKSLNFDRIVNILRFWLKSNQVQLPSTITFHRL 308 Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQN 346 + +F VS G + R N L++ + R NLP+ + + E N Sbjct: 309 IHEVIFSSQDAVPLVSWGNNSVRRYHNHLYLDKISRCNLPSDVEWTEFPV-------PLN 361 Query: 347 LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGK 387 + +S I++ Q + + I Q A S+ +EGG+ Sbjct: 362 IGNSEIRLMAQKSNQGLI-------IPQNASISIRFREGGE 395 >gi|262365357|gb|ACY61914.1| hypothetical protein YPD8_1229 [Yersinia pestis D182038] Length = 248 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 10/238 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L H+LV SGG DS LL L + ++ AI + H L A V++ Sbjct: 18 QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + +I VV Q G+ AAAR ARY S A +++TA DDQ ET Sbjct: 77 QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R GLS M + + + + RP L RE + ++ + + W ED SN Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 DDRF+R +R V L L + F + A + + A+ Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAEKLAAV 245 >gi|241758884|ref|ZP_04756997.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114] gi|241321092|gb|EER57305.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114] Length = 441 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 34/323 (10%) Query: 19 PAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H +V +SGG DS+ LL LH R F A+ V H L A ++ D Sbjct: 21 PSHTVVEVGLSGGLDSVVLLHLLHR---TREFHHFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L + V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CRGLNVTLRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + R +GM + + ++ +W RP L R+++ + Q +S+ ED SN D Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNED 191 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRS 248 + R +R L ++ F+ L+ + ++ +Y + Sbjct: 192 SSYLRNWMRNQ----ALPKWQQRIPNFEQQICTNVRLLQEDLQLLDELIESEYQRISPNG 247 Query: 249 IIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI- 304 I +IS Q + LL+Y LR SLP Y S+ L++ + +++ Sbjct: 248 IFSISLWRQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLP 301 Query: 305 -GRVVIDRRANFLWITRAVRNLP 326 G++V+ R F+ + LP Sbjct: 302 DGKLVVYRDKLFVCQESEFQKLP 324 >gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188] gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188] Length = 462 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ S A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKESPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333 >gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322] gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712] gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613] gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411] gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512] gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516] gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322] gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712] gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613] gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411] gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512] gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516] Length = 497 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2] gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2] Length = 462 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + WK+ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|238019645|ref|ZP_04600071.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748] gi|237863686|gb|EEP64976.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748] Length = 332 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 24/304 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ILVA SGG DSM LL LH + + R K VDHC+R +KDEV ++ Sbjct: 20 FPENSRILVACSGGPDSMALLYLLHDIATHR-HTTYKIGVAIVDHCIRPESKDEVLWLQH 78 Query: 76 VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + ++ + + R+ RY ++E A++ I AH DDQ Sbjct: 79 QVEELGLPFYSATFDVPSLSKEHKKSEETIGRQVRYQWLNEIAQSEGYDYISVAHHKDDQ 138 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E++ R G L+GM + D ++ + RP L +E++ ++L R +++C D Sbjct: 139 AESILAHLIRGTGLNG--LTGMA-VVSNDYDIPVIRPLLDVPKEELLAYLADRKLTYCID 195 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----------KY 241 +N D R++R ++R V + L D ++ +V+ + K Sbjct: 196 STNDDIRYQRNKIRHRV----IPELESINPNVVDAIARLGGSVSEDLAVISDLTVQAFKR 251 Query: 242 LTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 L + + +S+ L + + L + + I+L E+++ + +G+ Sbjct: 252 LVTIDKGEMRLSRRALRKEPLAIQRRLWQRLVSSIDSDITL-TTAHQEQLLDIVNTGEAK 310 Query: 301 CVSI 304 +I Sbjct: 311 TFTI 314 >gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Enterococcus faecalis T8] gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Enterococcus faecalis T8] Length = 500 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 54 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 110 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 111 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 170 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 171 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 227 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 228 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 283 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 284 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 340 Query: 302 VSI 304 S+ Sbjct: 341 GSV 343 >gi|157372000|ref|YP_001479989.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568] gi|189035972|sp|A8GIC1|TILS_SERP5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157323764|gb|ABV42861.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568] Length = 436 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 18/302 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 R L H+LVA SGG DS LL L + ++ A+ V H L A V Sbjct: 10 LARQLGAHRHLLVAFSGGLDSSVLLHLLVGLRQQ--LPDLQLRAVHVHHGLSAFADQWVT 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + C ++ V + Q G+ AAAR ARY+ + ++TA DDQ Sbjct: 68 HCRQQCVAWQLPLVVQHVQVDSQQGGIEAAARAARYSAFASTLAA--DETLLTAQHLDDQ 125 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET + +R G+ ++ N + RP L R+ + ++ Q +SW ED Sbjct: 126 CETFLLALKRGSGPAGLSAMAAQTSL---GNNHLLRPLLGHSRQQLEAYAQQHQLSWIED 182 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN D RF+R +R V + L+ + + L+ + L + +++ Sbjct: 183 DSNQDPRFDRNFLRLQVLPL-LNQRWPHFAAATARSASLCAEQEQLLDELLAEQLHNLLD 241 Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVS 303 + +L + F LLR A+ G +++P ++R+ + + Sbjct: 242 EDRALAIDGLLTCSAARRFALLRRWIALFG--VTMPSREQLQRLWEEVALSREDAEPQLQ 299 Query: 304 IG 305 +G Sbjct: 300 LG 301 >gi|117921240|ref|YP_870432.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3] gi|117613572|gb|ABK49026.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3] Length = 465 Score = 220 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 17/316 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +++A SGG DS L L + I V H L A + Sbjct: 19 LQAGSKLVLAYSGGVDSEVLAYGLSEFAKHHPEFHYQL--IYVHHGLSPNADAWAEHCQT 76 Query: 76 VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + + P+ + A AR+ RY I +H K +++TAH DDQLET Sbjct: 77 RAANYGLPITVERVQLTLGPRVSIEAEARKMRYQAILQHLKPQ--DVLLTAHHEDDQLET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + +R KG+ G + RP L RE I +F R + ED Sbjct: 135 ILLALKRGQGPKGLAAMGQIQMLPLGEKGACLQVRPLLDISREQIEAFAQTRQLVHIEDE 194 Query: 193 SNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN DD+++R +R + ++ + L + V + + L + Sbjct: 195 SNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAQLCAEQQAVVDAEVSERLPKLLTEA 254 Query: 250 IAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLF---LKSGKRGCV 302 Q +L +D + L + I LP Y +++++ K + + Sbjct: 255 HFTQQTVLKLDELATQTSEWQGLLLRGFIESQGFGLPSYVQLQQILQQLMGAKEDAKVQL 314 Query: 303 SIGRVVIDRRANFLWI 318 IG V+ R A L++ Sbjct: 315 QIGDCVLRRFAGMLYL 330 >gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000] Length = 497 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6] gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6] Length = 462 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333 >gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200] gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200] Length = 462 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329 S+ + + + ++L + + L + Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333 >gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2] gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2] Length = 462 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 125/333 (37%), Gaps = 28/333 (8%) Query: 7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V F++ + I+V VSGG DS+ LL H + R +I+ A VDH R Sbjct: 4 EKVSAFLKKKGLDLNNKKIVVGVSGGPDSIALL---HYFWNQRQQLQIELIAAHVDHMFR 60 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E + + +V D C + I + V K AAR+ RY+ AK Sbjct: 61 GEESFQDAMFVKDYCRKKAIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYG 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I H DDQ+ET+ MR R G +G+ + + +I RPFL R +I Sbjct: 121 AEYIALGHHGDDQVETILMRLTRGS--TGSARAGIPFKRPFG-DYFIIRPFLCLNRAEIE 177 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + L+ ++ DPSN + R R R+ V + FQ + + A L Sbjct: 178 DYCLKERLNPRRDPSNEKGIYSRNRFRQEVLPFLRKENPQVHEHFQRFSEDLQSDEAYLQ 237 Query: 239 PKYLT-----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM-----E 288 + + + IS DI + + L R + + S+ E Sbjct: 238 ELTVHKMNTVMKKKVNEEISMDI-DAFEAMPMPLQRRGIQLILNYLYKERPASLSASHIE 296 Query: 289 RVMLFLKSGK---RGCVSIGRVVIDRRANFLWI 318 + +KS G ++ ++ Sbjct: 297 SIFSLMKSPHPSGNLDFPGGLHIVRSYRQCHFL 329 >gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405] gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360] gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20] gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405] gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360] gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20] gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313] Length = 470 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 35/341 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +E+++ + + I+V VSGG DS+ LL L + G A+ V+H Sbjct: 1 MIDKVLETIKKY-NMINNKDKIVVGVSGGPDSVCLLHILCKLRESMDLG---LVAVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR + A + +V ++C +L + + + L R RY L E A Sbjct: 57 MLRGDEASGDEAFVENLCKKLNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVAD 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A I AH +DQ ETV M R G L GM I RP L R Sbjct: 117 NFGAQRIAVAHNKNDQAETVLMNIIRGTGLDG--LRGMDYIR-----GRIIRPLLGVERT 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVN 231 +I ++ N++ D +N ++ + R ++R ++ + + + K DL + Sbjct: 170 EIENYCRIHNLNPRIDSTNLENIYTRNKIRLDLIPYIEKLFNADIVNGISKMADL---IK 226 Query: 232 NAVAMLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPG 283 + V+ + + ++ ++ I + ++R S G I Sbjct: 227 DDVSFIESRTDEIYNKAKIKSDDKGVILDLNILKECHIAARKRIIRNSIKQIKGDIKGIA 286 Query: 284 YRSMERVMLFLKSGKRGCV----SIGRVVIDRRANFLWITR 320 ++ + +++GK G + R V + + Sbjct: 287 TVHIDSITDLIENGKTGSMLHLPHGVRAVKSYNTLKICLHE 327 >gi|260772239|ref|ZP_05881155.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14] gi|260611378|gb|EEX36581.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14] Length = 448 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 161/429 (37%), Gaps = 38/429 (8%) Query: 10 RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R F L +++A+SGG DS LL L R + A+ V H L A Sbjct: 5 RHFSHQLQAHDTKDLVLALSGGVDSRVLLHLLAQY---RDQYAVNVRAVHVHHGLSRNAD 61 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V C++ I+ V + + AR+ARY +++++ ++ H Sbjct: 62 HWVEQCRTWCNQSHISFDVEYVALERDSGESIEKLARDARYRVLAQYVNQQ--DTLLLGH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQLET + +R KG+ C + + RP L R+ I F + Sbjct: 120 HADDQLETFLLALKRGSGPKGLSAMAACASFS---QGQLLRPLLAVTRQQIEQFAQCHQL 176 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 S D SN D R++R +R V I + +++ +L + + L+ + L Sbjct: 177 SSVNDESNADLRYDRNFLRHQVAPILIQRWPSFRQAVQRSAELCAEQETLIEELLAEKLA 236 Query: 244 VHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 + S A+S Q + + L+R A + Q LP + E + ++G Sbjct: 237 NMINSDGALSIQGLKECSDAMRRQLIR--AWLAKQQRVLPSRQHTEMIWSQVALAEAGAN 294 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPT---LILYPEETTVWDGRYQFQNLSDSLIQIGP 356 + + I R + L+ +V ++ I + D + D I Sbjct: 295 PILHLKAYDIRRFNDLLFCVTSVADISEWRQKIRLDTPLVLPDQLGKLTLSLDPQGNIRL 354 Query: 357 QSYRKAD----VPSGIPPIIAQRALS----------SMPSKEGGK-PLLAPFSRFMTKFD 401 +++A P+G+ RA S ++PS + + P+L R + D Sbjct: 355 PVHQEALRVTFDPTGLSACPVGRAGSRKLKKLFQEYAIPSWQRRRMPILLEHDRVIAIAD 414 Query: 402 LPVAYAFSI 410 L V FS Sbjct: 415 LFVDRDFSG 423 >gi|329955642|ref|ZP_08296550.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056] gi|328526045|gb|EGF53069.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056] Length = 423 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 135/359 (37%), Gaps = 55/359 (15%) Query: 7 ESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ + PA ILVA+SGG+DS+ LL L ++ + A + LR Sbjct: 4 ERVARYISQKKFFMPADKILVALSGGADSVALLCLLQTL-------GYECEAAHCNFHLR 56 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E + + +V +C++ ++ +V + + + AARE RY + N Sbjct: 57 GEESDRDETFVRQLCAKRQVPLHIVHFDTLRTAEERHISIEMAARELRYEWFEKIRTKSN 116 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A +I AH DD +ET+ + R G+ + N I RP L R +I Sbjct: 117 ANVIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRNEII 169 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231 ++L + + D +N D + R ++R + + ++ + + Sbjct: 170 NYLNRIGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILNTAEHLNEASAIYK 229 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR--SMER 289 + I + T I A+ + TLLF +L G+ +E Sbjct: 230 KGIEEGIQRVRTAKGIHIGALMHEP--APKTLLFEIL-----------YPLGFNATQVED 276 Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL---------WITRAVRNLPTLILYPEETTV 337 + L + GK RVV DR + +T R L + P + TV Sbjct: 277 ICRALEGQPGKVFTSGHWRVVKDREYLLIETCQQATQPTLTMEERILTPDFIIPRDKTV 335 >gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170] gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170] Length = 434 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 76/322 (23%), Positives = 127/322 (39%), Gaps = 27/322 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F IE F L + L+A SGG DS+ L + + FS + Sbjct: 5 FREHIE--NHFPELLQ--SRFLLACSGGLDSVVLAHLCSEL-------GLDFSLAHCNFK 53 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR+ + + R+V ++ L++ V+ + ++ + AAR+ RY K Sbjct: 54 LRDIESDKDERFVKELAEILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQ 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++TAH DD +ET + R KG+ T + ISRP L R Sbjct: 114 HSIKTLVTAHHADDNIETFLINLSRGTGIKGL-------TGIPSKTNEISRPLLAFSRLQ 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I + Q NI W ED SN + ++ R ++R + L L+ + K + Sbjct: 167 IMEYAKQSNIEWREDQSNKETKYLRNKIRHEIVPR-LKELHPTFSNNFRITQKYLRQASD 225 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFL 294 + +L + I +++ I L +L+ A G + G+ E +++L Sbjct: 226 ISDGHLNQVKAKLFTIEGELIRIPIEPLK-VLKPLDAYLYGLFNEYGFTEWEDVKLLLNA 284 Query: 295 KSGKRGCVSIGRVVIDRRANFL 316 SGK R+V DR L Sbjct: 285 MSGKTIYSKTHRLVKDRDELLL 306 >gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346] Length = 497 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|315274600|ref|ZP_07869470.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120] gi|313615770|gb|EFR89028.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120] Length = 648 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A E + V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WESKLIPKEAISVAHLNHHLRENAAKEQQLVEIFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + K Q G+ AR RY + N ++ AH DDQ+E Sbjct: 77 KQHNLPFYTEEVDVKKQAQVLQKGIEETARIVRYDFFEKIMAEQNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SG+ I RPFL + +I + + ++++ D S Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIEYAHKHSLAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFGYLEELASDLLQKNLLKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KKTTLLLSSFKNEANPLQRRAIHLLL 279 >gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5] gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecalis JH1] gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1] gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5] gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecalis JH1] gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1] Length = 462 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244] Length = 497 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109] gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109] gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302] Length = 497 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|145300032|ref|YP_001142873.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp. salmonicida A449] gi|142852804|gb|ABO91125.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 92/419 (21%), Positives = 155/419 (36%), Gaps = 45/419 (10%) Query: 11 FFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 F ++L P +LVA SGG DS LL + + A+ V H L A Sbjct: 8 RFCQTLPEPEGSRGLLVAFSGGLDSTVLLALAAQFAREHG---LALRALHVHHGLSPHAD 64 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126 + V + VC +L + V + + L A AR+ARY ++ A+ ++TAH Sbjct: 65 EWVAHCEAVCQQLAVPLMVERVQLLRGNGESLEAQARDARYQRLA--ARQEKGEWLLTAH 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQLET+ + +R +G L+G+ + + L + RP L R ++ Sbjct: 123 HQDDQLETLLLALKRGAGLRG--LAGILPSQPFAGGL-LLRPLLEFSRAELAEVAATLPF 179 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY----- 241 W ED SN D ++R +R+ + L A + M + + + L+ + Sbjct: 180 GWVEDESNQDVSYDRNFLRQQLIP-QLKARWPAMARTAARSMALCAEQEALLEELAEEDW 238 Query: 242 ------LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 +H+ S+ A S I L + T LLR GG+ +P + + Sbjct: 239 QLACGGEALHVSSLPASSLQIVPLLTLSPTRRNNLLRYWIRRLGGE--MPSRDQLALLWQ 296 Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAV---RNLPTLILYPEETTVWD--GRYQF 344 + S+ + R L + R R+ + E + D GR Q Sbjct: 297 EVALAREDANPQFSLKNLDCRRFQGRLHLVRPGLTPRHEQLAVTIGESVVLPDGLGRVQV 356 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 D P V + P + + P G F + + ++ +P Sbjct: 357 SARPDGEGLRLPGMGEPLSVRFQVTPGVMLK-----PVGRSGSRR---FKKLLQEYGVP 407 >gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855] gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855] Length = 497 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96] gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis AR01/DG] gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96] gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG] Length = 462 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|149926802|ref|ZP_01915061.1| transcriptional regulator, GntR family protein [Limnobacter sp. MED105] gi|149824354|gb|EDM83572.1| transcriptional regulator, GntR family protein [Limnobacter sp. MED105] Length = 330 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 73/324 (22%), Positives = 114/324 (35%), Gaps = 15/324 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S + F R PA +VA SGG DS LL ALH + + A+ V+H Sbjct: 1 MKRSLETFLSDFNRHAPTPACFVVAYSGGVDSTVLLHALHVM-------GLPLHAVHVNH 53 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++ A + C + + + + K +GL AR RY I K Sbjct: 54 QIQTQADAWEAHCKSQCEQWGVPFTALRVKVEPSDSGLEGQARVERYRAIFNWMKANQHH 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRRED 176 +++ AH DDQLETV ++ R +G+G + D +L + RP L C + Sbjct: 114 VLLCAHHRDDQLETVLLQLLRGSGLRGVGGMRAVGPVGVDRHLHPELLLCRPLLNCSKPS 173 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + + + + EDPSN D R VR + K L + Sbjct: 174 LLDYARENRLQHIEDPSNHDTALRRNWVRHELLPSLEEHFPQSPKALLQLAEFFQAHYSA 233 Query: 237 LIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + I +D + LR G + + R + Sbjct: 234 EDSDTQAMAPQVISDTGGLQLIQWRVMDDSAQLNSLRHWLLSQGVRCGKLKLIELARQLR 293 Query: 293 FLKSGKRGCVSIGRVVIDRRANFL 316 K G R +V + R+ L Sbjct: 294 INKGGIREVKKGWQVKVSRQQAHL 317 >gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043] gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312] Length = 497 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|295087951|emb|CBK69474.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Bacteroides xylanisolvens XB1A] Length = 426 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 137/392 (34%), Gaps = 65/392 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE F A +L+A+SGG+DS+ LL LH+ A + LR E Sbjct: 10 IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R I + + + Q + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L REDI + Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + D +N +D + R ++R + + K D +N+ + Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231 Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291 I IS+ + +LF +L G+ S + Sbjct: 232 IEETKNNIVTTEGIRISELVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338 L + GK+ C RV+ DR N + I + + L P + + Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILLPFQIIKEEKEYTPDFLIPRDKGIA 340 Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361 D Y+ D+ I G + +K Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372 >gi|28209970|ref|NP_780914.1| cell cycle protein mesJ [Clostridium tetani E88] gi|61216641|sp|Q899H5|TILS_CLOTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28202405|gb|AAO34851.1| cell cycle protein mesJ [Clostridium tetani E88] Length = 467 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 114/321 (35%), Gaps = 23/321 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 I+V VSGG DSM LL L+ + R + A ++HCLR A ++ +YV + Sbjct: 17 KGDKIIVGVSGGPDSMCLLHILYRL---RDEYNLNIIAAHINHCLRGKDADNDEKYVENF 73 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I K A RE RY ++ N I AH +DQ Sbjct: 74 CKKYDIDFYSTKIDVGKLAKKENISFEVAGRECRYDFFNKLKLKFNCDKIALAHNSNDQC 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ MR R G G+ G+ N++I RP + R+ I + + + D Sbjct: 134 ETILMRIMR-----GTGIEGLAGIKAIRDNIYI-RPIIEASRKQIEDYCEEHELEARIDK 187 Query: 193 SNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPK---YLTVH 245 +N + + R +VR + + + + + + K Sbjct: 188 TNLESIYARNKVRLELIPYIQENFNQDIIAVINRMGNNIDVDREYLDFASDKKFYQFCTS 247 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + + I ++ + ++R S G + +E ++ K +++ Sbjct: 248 TKYEVVIKKEAFLEHKAITSRIIRRSINRLKGNLYNFERVHVEDILNLQKGSTGKFITLP 307 Query: 306 RVV--IDRRANFLWITRAVRN 324 + ++ + + Sbjct: 308 EKIKALNNYGDIHIFFEEFSD 328 >gi|117617562|ref|YP_855748.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558969|gb|ABK35917.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 446 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 88/410 (21%), Positives = 152/410 (37%), Gaps = 37/410 (9%) Query: 11 FFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 F ++L P +LVA SGG DS LL+ ++ + A+ V H L A Sbjct: 8 RFCQTLPAPEGSRGLLVAFSGGLDSTVLLVLAAQFAREQG---LVLRALHVHHGLSPNAD 64 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126 + V + VC +L + V + + L A AREARY + A+ ++TAH Sbjct: 65 EWVAHCETVCQQLAVPLLVERVQLQRDSGDSLEAQAREARY--LCLAAQLGEGEWLLTAH 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQLET+ + +R +G L+GM + + L + RP L R ++ Sbjct: 123 HQDDQLETLLLALKRGAGLRG--LAGMVPSQPFAGGL-LLRPLLEVSRTELADAAASLPY 179 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 W ED SN D+ ++R +R+ + A+ + L + + L Sbjct: 180 GWVEDESNQDESYDRNFLRQRLIPQLKARWPAMAQTAARSMALCAEQEALLEELAEADWR 239 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300 + +L + T LLR GG+ +P + + + Sbjct: 240 LAAAGEALQIAPLLALSGTRRNNLLRYWIRRQGGE--MPSREQLGLLWQEVALAREDANP 297 Query: 301 CVSIGRVVIDRRANFLWITRAVRNL--PTLILYPEETT-VWDGRYQFQNLSDSLIQIGPQ 357 ++ G R L + R L L ET + DG + + L + Sbjct: 298 QLNWGGQSCRRFQGRLHLVRPGLQPRYEQLTLAVGETLSLPDGLGEVRLLPRVEGE---- 353 Query: 358 SYRKADVPSGIPPIIAQRALSS----MPSKEGGKPLLAPFSRFMTKFDLP 403 +P P+ + +++ P GG L + + ++ +P Sbjct: 354 ---GLRLPRADEPLSVRFGVAAGSMLKPVGRGGSRRL---KKLLQEYGVP 397 >gi|15896451|ref|NP_349800.1| cell cycle protein MesJ-like protein [Clostridium acetobutylicum ATCC 824] gi|61216713|sp|Q97EB0|TILS_CLOAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15026275|gb|AAK81140.1|AE007816_4 Cell cycle protein MesJ ortholog, ATPase of the PP-loop superamily [Clostridium acetobutylicum ATCC 824] gi|325510609|gb|ADZ22245.1| ATPase of the PP-loop superamily [Clostridium acetobutylicum EA 2018] Length = 461 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 21/297 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 I+VAVSGG DS+ LL L + + A V+HC+R A D + YV C Sbjct: 19 DRIVVAVSGGPDSICLLHILFKL---KDKFNTSICAAHVNHCIRGEAADKDEEYVKKFCE 75 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L I V +K + A RE RYA E + A I AH +DQ ET Sbjct: 76 KLDIQFYVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERFKANKIAIAHNANDQAET 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + MR R +G + G+ + + RP + RR I + + D +N Sbjct: 136 IMMRIIRGTGTEG--IKGIRPVR----DGYYIRPLIEIRRSSIEKYCEDEKLMPRIDATN 189 Query: 195 TDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI- 249 + + R ++R + + + + + +L N+ + L ++ Sbjct: 190 LERDYNRNKIRLDLIPYIVKNFNEDIVGALNRLGELVTIDNDYLEKLAKSKYKLYCNECE 249 Query: 250 --IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + IS++ + D+ +L ++R + + ++ ++ K+ +++ Sbjct: 250 KQVIISKEAFSNDTAILSRIIRRAVFYLVNSKYNLEKKHIDSIIGCQKNTTGKQINL 306 >gi|88798276|ref|ZP_01113862.1| cell cycle protein MesJ [Reinekea sp. MED297] gi|88779052|gb|EAR10241.1| cell cycle protein MesJ [Reinekea sp. MED297] Length = 439 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 135/354 (38%), Gaps = 38/354 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFL +R R+ P + V SGG DS+ LL +G + +AI V+H Sbjct: 11 MFLDLQRELR---RNFQPP--VYVGYSGGVDSILLLSLACQA-----YGADQVTAIHVNH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + E A + +L + V + + G+ + AR+ RY + Sbjct: 61 QVSEFATQWQEHCVAQAEQLGCSCIVRTVEVGNRGQGIESDARDRRYDAFANVMPEGG-- 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ H DDQ+ET ++R R + G L GM D I RP L R+DI Sbjct: 119 TLLLGHHLDDQIETFFLRLLRGAGQHG--LQGMVQESNRD-GYRIIRPLLTTSRQDIELM 175 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA----- 235 + W +D SN D RF+R +R V L + + ++ ++ +A Sbjct: 176 AQHHGLRWIDDESNEDTRFDRNFLRHEV----LPKIESRWPGYRQRILQTQQLIAGTETS 231 Query: 236 ----MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + H + + + D L+ D L LL G ++ P +E V+ Sbjct: 232 SVDMSEALAHRLSHDQGLKMVQLDELSRDQIL--SLLHQWLTTVGQKV--PSKARLEVVL 287 Query: 292 L---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVWDG 340 + R V IG I R L+ A LP ++ +E VW G Sbjct: 288 DEVVHARQDARPSVRIGEGTIQRHGPALY-WVADSPLPSQAPLVQMDEALVWPG 340 >gi|304409578|ref|ZP_07391198.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183] gi|307303936|ref|ZP_07583689.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175] gi|304352096|gb|EFM16494.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183] gi|306912834|gb|EFN43257.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175] Length = 486 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 34/334 (10%) Query: 7 ESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E + F+ +SL +++A SGG DS L L R + + + V H L + Sbjct: 16 EHISAFLTAQSLAPRCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSD 73 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIM 123 A+ ++ + + +V ++ P+ L A AR+ RY I H +++ Sbjct: 74 NAEVWAQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLL 131 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQLET+ + +R KG+ G + L RP L RE I ++ Q Sbjct: 132 TAHHEDDQLETILLALKRGQGPKGLAAMGQVQVLAQGRQL---RPLLDISREQIEAYAKQ 188 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + + ED SN DD+++R +R L + ++ + + + A+ + T Sbjct: 189 QGLVHIEDESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASRSAALCAEQQAT 241 Query: 244 VHMRSIIAISQDILNIDSTLL--------------FYLLRVSAAICGGQISLPGYRSMER 289 + ++ + + + L + I +LP + + Sbjct: 242 LDVQVSERLPLWLTQAPYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQ 301 Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + +L K + + +G I R AN +++ + Sbjct: 302 IITQLLTAKDDAKVHIRVGECEICRFANQVYLFK 335 >gi|298484345|ref|ZP_07002506.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22] gi|298269499|gb|EFI11099.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22] Length = 426 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 136/392 (34%), Gaps = 65/392 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE F A +L+A+SGG+DS+ LL LH+ A + LR E Sbjct: 10 IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R I + + + Q + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L REDI + Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + D +N +D + R ++R + + K D +N+ + Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSIKKNLIDTSNYLNDVATIYNKC 231 Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291 I IS + +LF +L G+ S + Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338 L + GK+ C RV+ DR N + I + + L P + + Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILPPFQIIKEEKEYTPDFLIPRDKGIA 340 Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361 D Y+ D+ I G + +K Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372 >gi|237712941|ref|ZP_04543422.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409616|ref|ZP_06086156.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294643471|ref|ZP_06721284.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a] gi|294807915|ref|ZP_06766696.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b] gi|229447060|gb|EEO52851.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352469|gb|EEZ01569.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292641190|gb|EFF59395.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a] gi|294444913|gb|EFG13599.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b] Length = 426 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 137/392 (34%), Gaps = 65/392 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE F A +L+A+SGG+DS+ LL LH+ A + LR E Sbjct: 10 IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R I + + + Q + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L REDI + Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + D +N +D + R ++R + + K D +N+ + Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231 Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291 I IS + +LF +L G+ S + Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338 L + GK+ C RV+ DR+ N + I + + L P + + Sbjct: 281 LHSQPGKQFCSKKWRVIKDRKFLLIEAIESGNEILPPFQIIKEEKEYTPDFLIPRDKGIA 340 Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361 D Y+ D+ I G + +K Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372 >gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC 29200] gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC 29200] Length = 497 Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102] gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102] gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031] Length = 497 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63] gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Clostridium difficile NAP08] gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07] gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Clostridium difficile NAP08] gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07] Length = 462 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 25/322 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + I++ +SGG DS+ LL L+ + D I+ A ++H +R A+ + YVS Sbjct: 16 IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C + I V S K L AR+ RY + E I A I H +D Sbjct: 73 KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV MR R KG+ I Y + I RP L R +I + N++ Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERSEIEEYCEAYNLNPRI 186 Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D +N ++ + R ++R + + ++ + + + Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246 Query: 243 TVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300 + + + I+ D + + + +LR S G + R +E +M + K Sbjct: 247 NIKEKGFVEINLDDFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306 Query: 301 CVSIGRVV-IDRRANFLWITRA 321 +++ R + + R+ + + +T Sbjct: 307 MLTLPRNIFVYRKKDSIILTNE 328 >gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like [Moorella thermoacetica ATCC 39073] gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica ATCC 39073] Length = 455 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 71/330 (21%), Positives = 127/330 (38%), Gaps = 32/330 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR ++ LV ++V VSGG DS+ LL +L ++ + + ++H L Sbjct: 2 LDRVRQTIQDYHLLVPGDKVVVGVSGGPDSLALLHSLMTLQEEYGY---TLQVAHLNHGL 58 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R A + YV D+ + + +V V + + AAARE RY E A + Sbjct: 59 RPEAAADAEYVRDLATGWGLPVTVAQRDVLAYRQEHHLSIEAAAREVRYNFFQEVAAAVG 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H +DQ ETV + R G+ + + RP L R +I Sbjct: 119 ATRIAVGHQAEDQAETVLLNLLRGSGLTGL-------KAMLPRRGRLIRPLLFVTRAEIE 171 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 ++ + D +N D + R ++R + + + + L+ Sbjct: 172 AYCRDNGLHPRRDFTNEDPAYRRNKIRHQLLPLLAREYNPAIVATLGRTALILQEDEALL 231 Query: 239 PKYLTVHMRSIIA---------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + II Q ++ L +LR++AA G ++ + +E+ Sbjct: 232 ADLAHRALEGIIKRREGETLVLDRQGWQDLAPALQRRVLRLAAATLGRRV---SFNQVEK 288 Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWI 318 + G G ++ GR+ I R L + Sbjct: 289 ARAVAREG--GTLTWPGRLSIRARGAELHL 316 >gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1] gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1] Length = 462 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|323491002|ref|ZP_08096196.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2] gi|323395358|gb|EGA88210.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2] Length = 463 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 78/345 (22%), Positives = 131/345 (37%), Gaps = 25/345 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +LV SGG DSM LL L+S+ +D I +A+ VDH LR E + + + Sbjct: 18 LQTGDKVLVGCSGGIDSMVLLYFLNSIKADLG---ISVAAVHVDHMLRGEESDKDRLFTE 74 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + I + K R RY E K AT TAH DD Sbjct: 75 KIAKQWGIECFSRAIPIPAILEKRGGNKQQVCRTERYNYFLEVMKQTGATKFATAHHADD 134 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 QLET+ M R + G GM + + N + RP L +E I ++ NI + E Sbjct: 135 QLETILMSGVRGSLQDGSF--GMLASRPFG-NGQLIRPLLAVVKEQISAYAKSLNIPYRE 191 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D SN + + R R+R+ V + + Q + + + + + Sbjct: 192 DSSNAEAAYTRNRLRQNVLPLLKEENSKVSQNFVELAEDMQQDQQFLQELAQQKLQQLIR 251 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + ++ L ++ + +P R + M + G V Sbjct: 252 IESGKVFLSAKSFRVEAHALQKRMVLLLLNYLYNPKQVPLTRQLVEQMQEMMQSSSGTVF 311 Query: 304 IG---RVVIDRRANFLWITR----AVRNLPTLILYPEETTVWDGR 341 + + R+ + + + R AV L T+ + + T ++DGR Sbjct: 312 LHLPQHYIAIRQYDTVLLGRQSQEAVAELTTINITADWTPIFDGR 356 >gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [marine bacterium HP15] Length = 449 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 83/344 (24%), Positives = 129/344 (37%), Gaps = 23/344 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ VR L + VA+SGG DS LL AI ++H L+ A Sbjct: 15 EALCAPVRELPDHTRLWVALSGGLDSTLLLHLAAHCHGCSGA----VRAIHINHQLQPNA 70 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIM 123 D + C RL + V ++ G+ AAR+ARYA + L++ Sbjct: 71 SDTESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGK--GDLVL 128 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DDQ ETV R R GL+GM + + RP L R ++ + Sbjct: 129 MAHHGDDQAETVLFRMLRGSGV--AGLAGMPASRELGT-ATLVRPLLGFERAELERWARV 185 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR------VKVNNAVAML 237 +SW +DPSNTD RF+R +R V + ++ + +N +A L Sbjct: 186 AGLSWVDDPSNTDQRFDRNFLRHTVLPLLRDRWPGLNRRLRHTAESCGESEALNRKLAAL 245 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG-YRSMERVMLFLKS 296 + + + + + L+R A G PG ++ + R +LF Sbjct: 246 QWQAIGGDRDRL--PVDGLKTLPLAEQKNLVRWWARERGFHAPTPGDWQQVIRDLLFAAE 303 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVW 338 + + R L + LP + L P E W Sbjct: 304 DREPEFRSDGFSLRRFQGDLCLVPDRGPLPDAPVDLEPGEGVAW 347 >gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol] gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol] Length = 462 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V+ +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVVEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|15612646|ref|NP_240949.1| cell-cycle protein [Bacillus halodurans C-125] gi|61216744|sp|Q9KGH8|TILS_BACHD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|10172695|dbj|BAB03802.1| cell-cycle protein [Bacillus halodurans C-125] Length = 462 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 33/376 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ IE R F + ++VAVSGG DSM LL L S R I A +H L Sbjct: 6 LNFIEEHRLFASGGL----VIVAVSGGPDSMALLHFL---FSHREQLGITVMAAHGNHQL 58 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R+ A +E +V C I + V + G+ ARE RY + AK Sbjct: 59 RQEADEEETFVHQFCLSHGILFTSARLPVKERMEMSGEGVQVTARELRYKWLEAEAKKHG 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I T H DDQ+ET+ M+ R G + + ++ I RPFL + I Sbjct: 119 AAFIATGHHGDDQIETILMKQVRGTFPLSRGGIPVRREV---GDVLIVRPFLGITKGQIE 175 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKF-QDLRVKVN 231 + + NI DPSN + R R R + + + H + ++ ++ ++ + Sbjct: 176 HYCKEVNIEPKRDPSNNASSYTRNRFRHTIIPFIRGENPNAHLHFRRISEWKEEDECFLL 235 Query: 232 NAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMER 289 + + L ++ I +D LN+ L ++ + + G+ +ER Sbjct: 236 DLAENALADVLLHKDEHLVTIDRDAFLNVGLPLQRRMIHLILKYLYTNDSPANGFIHIER 295 Query: 290 VMLFLKSGKRGCVSIG---RVVIDRRANFLWITRAVRNLPTLILYP------EETTVWDG 340 + +++ G + + ++R + RA + +YP + + G Sbjct: 296 IETLIRNDVTGT-KLHLPMGITVERVYGQIRWVRASGEKQPVPVYPVVIEGEGQVSTPFG 354 Query: 341 RYQFQNLSDSLIQIGP 356 R+ L + P Sbjct: 355 RFCVVQLVSGPRSMSP 370 >gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3] gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704] gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3] gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704] Length = 462 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2] gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2] Length = 424 Score = 219 bits (559), Expect = 6e-55, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 155/398 (38%), Gaps = 22/398 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I ++VSGG DS+ L+ + + + ++VDH LR A+ E+ V+ + L Sbjct: 29 IGLSVSGGGDSIALMHLAARLRDPK-----RLRVLTVDHGLRPEAQQEIALVASQAADLN 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H+V+ W Q L AAAR R+A +S A N + HT DDQ+ETV MR R Sbjct: 84 IDHAVMPWT-WDGQGNLQAAARARRWAAVSAWAAMHNMREVWLGHTEDDQVETVLMRLAR 142 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + +L I RP L C R D+R +L I WCEDPSN D RF+R Sbjct: 143 GSGIDGLTAMY---PLSERDDLRILRPLLGCARADLRHWLQSNKIPWCEDPSNDDPRFDR 199 Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 VR R+ ++ L + Q + + A +++ ++ + Sbjct: 200 VRARQMFAQLEGLGLTRKRLLQTIDHMQAAHLSLQIAAHGFARQHVRQDAGDLLCDPPAL 259 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 + ++ + A G + P + + + + G V++ ++ N + Sbjct: 260 DLQKADAPRRVMAAAFAWVGSRTYRPRFEQLLDTVARARKG--MTVTLAGCIMTPEPNGI 317 Query: 317 WITRAVRNLPTLILYPE-----ETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 P WD R+ + + + P+ Sbjct: 318 VRLTREAAATAATRRPTPKPDMTGAFWDHRWFLEGPVQDSLTFKALGDGIMECPNWRDSG 377 Query: 372 IAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAF 408 + + +L + PS G ++ AP + + + F Sbjct: 378 MPRTSLLASPSVWEGDVVIAAPLAGLSNGWSARIVADF 415 >gi|323705585|ref|ZP_08117159.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535062|gb|EGB24839.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 460 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 68/337 (20%), Positives = 136/337 (40%), Gaps = 26/337 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S ++++ + + + I+V VSGG DS+ LL L + + K+K + V+H Sbjct: 1 MIDSFEKTIKEY-KMIEKGDKIVVGVSGGPDSICLLNLLLEI---KERYKLKLFVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAK 115 LR A + +V C + I V + AA RE RY+ ++ K Sbjct: 57 MLRGADADSDALFVEKFCKGINIPFFLFKEDVRRYAEENGLSEEAAGREIRYSAFNKVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D ETV + R G+ + +N I RP ++ +R Sbjct: 117 EVGGNKIAIAHNKNDVAETVLLNILRGAGTTGL-------VGIKPVNGCIIRPLIQTKRR 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227 +I +L +N+ + ED +N +D + R R+R + + LY + D Sbjct: 170 EIIDYLNSKNLEFVEDVTNKEDAYRRNRIRLKLIPFIEEYFDIDMVENLYRTSQIVLDDE 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + + ++ I + S++ ++R++ G + ++ + Sbjct: 230 DYLSRESEKIFNEIADIDNGNVKLDIDGIKKLHSSIKRRVIRLAYKKLKGDFNQLAFKHV 289 Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAV 322 E V+ + ++ + + VI N ++ R Sbjct: 290 EDVLDIMDKQTSSKIDLPFEIEVIKSYNNLIFRKRNF 326 >gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62] Length = 462 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQHFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|294635147|ref|ZP_06713656.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685] gi|291091452|gb|EFE24013.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685] Length = 439 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 165/413 (39%), Gaps = 30/413 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ ++ L H+LVA SGG DS LL AL + + R +++ + V H L Sbjct: 1 MNTLDIQMHIADKLAGRRHLLVAFSGGLDSTVLLHALVQLRATR-LPQLRLRVVHVHHGL 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 A V + VC ++ V+ + + + AAAR+ARY I+ + + Sbjct: 60 SAFADQWVEHCESVCHHWQVPLHVLHVQVDTQRNSVEAAARDARYRAIAALIGSH--ETL 117 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TA DDQ ET + +R GLS M +++ + RP L R + S+ Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAESMPFFATEQ-RRPLLGLSRRQLLSYAQ 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +++W ED SN D RF+R +R + + L + F + + + A Sbjct: 175 AHHLTWVEDDSNADARFDRNFLRMRIVPL----LRARWPHFSEAVARSASLCAEQEQLLD 230 Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291 + + S+ A+ +L + + LLR A G +++P ++R+ Sbjct: 231 ELLLESLQALMSEDDSLSVDGLLPLSEAKRYALLRRWIACFG--VTMPTREQLQRLWHEV 288 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 + + + I R L++ A+R+L +L WD R Q +L D L Sbjct: 289 ALARDDAEPQLHLANSQIRRFRRRLYLLPAMRSLRDEVLS------WDPR-QPLSLPDGL 341 Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404 ++ S A ++ R + + G+ P + + +P Sbjct: 342 GELQLGSRGIAVRAPAADEAVSIRFCAQGVLRIVGRRHSRPIKKIWQELHIPP 394 >gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141] Length = 497 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337 Query: 302 VSI 304 S+ Sbjct: 338 GSV 340 >gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1] gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98] gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1] gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98] Length = 462 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|167465338|ref|ZP_02330427.1| tRNA(Ile)-lysidine synthetase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 424 Score = 219 bits (558), Expect = 8e-55, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 29/319 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL L+ + ++ + K A V+H R E + +E +YV S L Sbjct: 23 VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V V + AARE RY + + A NA I AH DDQ ETV Sbjct: 80 GIPCEVGVIDVPAYIRETSLNPQVAAREKRYEFLHKIANVYNADKIALAHHADDQAETVL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G+ + + N+ + RP LR + ++ S+ + + + D SN Sbjct: 140 MRIVRGTGLSGLTGIPIKRK---EKNVELVRPMLRIYKNEVISYCHEHQLHFFRDSSNDS 196 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAIS 253 ++ R +VR V L L + + ++ V + + M S++ Sbjct: 197 RKYFRNQVRLDV----LPFLSSYNEHLPEALNRLAEMVKGEDDYMDEQARREMSSLVKCQ 252 Query: 254 QD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 +D L++ L ++++ Q + ++E++ L + V + Sbjct: 253 KDSYSFGRTAFLSLHLALQRRVIKLILNYLALQAEKIDFITVEQIRLAILQDAHSNVRLN 312 Query: 306 ---RVVIDRRANFLWITRA 321 ++ R + I + Sbjct: 313 LPEELLFIREYEAIRIQKE 331 >gi|269960608|ref|ZP_06174980.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834685|gb|EEZ88772.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 448 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 22/329 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66 R I++A SGG DS LL L S + A+ V H L A Sbjct: 14 RYYQSGTKIVLAFSGGVDSRLLLELLSRYRQANSIDNQSAGSKSVSCHAVYVHHGLSSNA 73 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + I+ SV + + AREARY +++H + L++T Sbjct: 74 DNWANQCLVWAQQAGISCSVEHVNLDINSGESIELLAREARYQALAKHIQM--GDLLLTG 131 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ+ET + +R KG LS M +++ + + + RP L +RE I + ++ Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFA-DGTLVRPLLAVKREQIEAVAKEQK 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +SW ED SN D R++R +R + +++ +++ L + + L+ Sbjct: 189 LSWVEDESNQDIRYDRNFLRHHIVPELSERWPSIHQAVQRSASLCAQQEALLDELLSVVF 248 Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML---FLKSGK 298 ++S +++S + L S L L+R+ A +++P + + + Sbjct: 249 ERALQSDLSLSIEELATHSELARARLVRMWLAKL--NVNMPTQVQLNLIWNEVGLAQQDA 306 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327 + + + + R N L+ +L T Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETADLTT 335 >gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008] gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008] Length = 332 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 134/311 (43%), Gaps = 24/311 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILVA SGGSDSM LL L + + R + VDHC+R +KDEV ++ L Sbjct: 25 RILVACSGGSDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRPESKDEVLWLRTQVDVL 83 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + K + R+ RY +++ A++ I AH DDQ E++ Sbjct: 84 GLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTDIAQSEGYDYIAVAHHKDDQAESIL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G L+GM + D + + RP L +E++ +L +++IS+C D +N D Sbjct: 144 AHLIRGTGLNG--LTGMA-VVSNDYTVPVVRPLLDVTKEELLLYLKEKDISYCIDSTNED 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-----------MLIPKYLTVH 245 R++R R+R + + L + V++ N+V M+ + +T+ Sbjct: 201 VRYQRNRIRHRI----IPELETINPNVVNAIVRLGNSVCEDVSLISNLTDMVFDELVTIS 256 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 +++ + L + +I +I L E+++ + +G+ +I Sbjct: 257 DEGAFISRRELRKEPLAIQRRLWQRLVSILDSEIKL-TTAHQEQLLDIVNTGEEKTFNIK 315 Query: 306 RVVIDRRANFL 316 + + + + + Sbjct: 316 SIKVSAQCDTI 326 >gi|121535066|ref|ZP_01666883.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1] gi|121306316|gb|EAX47241.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1] Length = 468 Score = 219 bits (557), Expect = 8e-55, Method: Composition-based stats. Identities = 77/353 (21%), Positives = 127/353 (35%), Gaps = 26/353 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L ++++ R L ++VA SGG DS+ L+ LH + F VDH Sbjct: 1 MILEKVKALVERRRLLTAGDRVVVACSGGPDSLALVHLLHRLQPAYGF---DMVVAHVDH 57 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 LR + E +V C RL + V V ++ AR RYA + A Sbjct: 58 MLRGAESAREAEFVRAFCRRLGLDCQVAAIDVPGVLAERGGSTQEVARTLRYAFLRRVAD 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 ++ I T H DDQ ETV + R G L GM I RP L R+ Sbjct: 118 SLGGAKIATGHHRDDQAETVLINFLRGAGPGG--LRGMQPAA-----GGIIRPLLSVTRQ 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I + ++ C D SN + R RVR + + L + D Sbjct: 171 EIEDYCAAEGLTPCLDSSNLHTDYLRNRVRLELLPLLAREYNPAIGENLARLAEIMADQY 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + A + + + S + + + L +LR++ G ++ + + Sbjct: 231 DFLKQCAADVYTRVADETEGRLALDSAALAALPTALRREVLRLAIEKKRGSLTGISFWHV 290 Query: 288 ERVMLFLKSGKRG---CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 E+++ GK G + G + + RA + + P + Sbjct: 291 EKLLEMALDGKVGSLFTLPGGLSFVRTYDGLATVDRAGSARAAVGIAPPGRAL 343 >gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470] gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470] Length = 497 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 62/297 (20%), Positives = 119/297 (40%), Gaps = 16/297 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM L + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALFTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETIL 167 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNAVAMLIPKYLTVHMRSI 249 + + R R+R V + + + + + + + + + + Sbjct: 225 NEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGW 284 Query: 250 IAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + +L + L + +SL R M +++ L ++ S+ Sbjct: 285 RFNPKRLLKETPAYQHFFLTAFFQKTLVPLGVSL-NQRQMTQILKVLNDERQPQGSV 340 >gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23] gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23] gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99] Length = 648 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSDLVPKEAISVAHLNHHLRENAANEQNVVETFC 76 Query: 78 SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + + Q G+ AR RY + N + AH DDQ+E Sbjct: 77 ERHGIPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I ++ + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + ++Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPSVYAHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLTSFKNEANPLQRRAIHLLL 279 >gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023] Length = 453 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 21/326 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS LL L S + K + ++H LRE A+ E V C Sbjct: 20 SDDKLLVAVSGGPDSFALLHFL---WSAKLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76 Query: 78 SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + V + K Q G+ AR RY + N ++ AH DDQ+E Sbjct: 77 EERDIPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SG+ I RPFL + +I + + + D S Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYANTHTLPYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y K+F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRTQLLPFLSKENPAVYDHFKRFSEETSEDFQFLEELASNLLKKNLIQNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAIC----GGQISLPGYRSMERVMLFLKSGKRGCV 302 + + D N + L + + G I++ + +++ + Sbjct: 254 KQSTLLLSDFKNEANPLQRRAIHLLLMYLYNDDGRVITVNHIYQIIQMIQSENPSSSIDL 313 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTL 328 VI + P Sbjct: 314 PKKLTVIRSYNELHFQFGERHAPPEF 339 >gi|94501920|ref|ZP_01308430.1| Cell cycle protein MesJ [Oceanobacter sp. RED65] gi|94425973|gb|EAT10971.1| Cell cycle protein MesJ [Oceanobacter sp. RED65] Length = 446 Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 112/307 (36%), Gaps = 14/307 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V +SGG DS+ LL + + ++ I V+H L E A ++V +C Sbjct: 25 RLYVGLSGGIDSVVLLFLCKQFV-EYHHSSVELHGIHVNHGLSEFADQWQQHVEGLCEAW 83 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + + + AR ARY +++ H DDQ+ET+ R Sbjct: 84 SIPLVSHRVELEQ-KGSIEEVARNARYDAFKRSLDDQ--DVLVLGHHQDDQVETMMQRLM 140 Query: 141 RDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + T+ N I RP L ++ I + + + +D SN D + Sbjct: 141 RGSGLSGLLSMNVARTLDLGNNKQAIILRPLLSTTKKQIEQYANDHQLKYVQDDSNLDTQ 200 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQD 255 F+R R V + + + Q + + L + + L + S +++ Sbjct: 201 FDRNFWRLQVLPLIENRYPQYRQSVQASLNALQEEQSCLQFFLQQALEKVLLSDASLAIS 260 Query: 256 ILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311 +L + ++R LP ++ + ++ + + R Sbjct: 261 VLQQYPKFIQQQIIRYWLQFNE-IFPLPTQSQLDTIFDEVIAAREDAEPRFHWQTHSLAR 319 Query: 312 RANFLWI 318 N L++ Sbjct: 320 YRNGLFL 326 >gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e] gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 1/2a F6854] gi|224500330|ref|ZP_03668679.1| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland 1988] gi|224503461|ref|ZP_03671768.1| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL R2-561] gi|254900996|ref|ZP_05260920.1| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161] gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818] gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900] gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578] gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923] gi|61216688|sp|Q8YAC7|TILS_LISMO RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA protein, C-terminal part similar to hypoxanthine-guanine phosphoribosyltransferase [Listeria monocytogenes EGD-e] gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 1/2a F6854] gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900] gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578] gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923] gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818] Length = 648 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A E R V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + Q GL AR RY + N ++ AH DDQ+E Sbjct: 77 ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279 >gi|317126809|ref|YP_004093091.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522] gi|315471757|gb|ADU28360.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522] Length = 471 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%) Query: 7 ESVRFFVR--SLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F++ L+Y I+VAVSGG DSM LL L V D ++ V+H LR Sbjct: 3 QIVNEFIKDHQLIYEKDRIIVAVSGGPDSMALLHYLQMVKRD---YHLQLIVAHVEHGLR 59 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSVV--SWKNSKPQTGL--MAAAREARYALISEHAKTIN 118 + ++ +V C ++ + + K + GL AAR +RY + + Sbjct: 60 GVESVNDCNFVKSYCEENKLDFFLYEPNVMAMKEELGLSTQEAARFSRYQWFEKLMEEHK 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT + AH DDQ+ETV M+ R L G+ + N I RPFL + DI Sbjct: 120 ATKLAFAHHGDDQVETVLMKQVRGSVVS---LQGIPVKRQFG-NGMIIRPFLCVEKSDIL 175 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNN--- 232 + + +I + D SN D ++R R R+++ + +++ ++ ++ + N Sbjct: 176 EYCQEHHIQYRIDQSNDSDNYKRNRFRKYILPFLKEENPSIHKTFQRQSEISTEENEFLQ 235 Query: 233 -AVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFY----LLRVSAAICGGQISLPGYRS 286 M + K + H S I IS Q +L + +TL +L + G +I++ + S Sbjct: 236 SLAKMEVEKAIDYHQESEICISNQRLLQMPTTLQRRALHLILNYLSLNSGREITVHHFDS 295 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLW---ITRAVRNLPTLILYP 332 + ++ + G V L+ I + P Sbjct: 296 IIELIKKASPSGMLHLPKGIFVEKVYDKCLFKVNIHKERPETIQFTKIP 344 >gi|225075259|ref|ZP_03718458.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens NRL30031/H210] gi|224953434|gb|EEG34643.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens NRL30031/H210] Length = 441 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 138/323 (42%), Gaps = 34/323 (10%) Query: 19 PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P+H + V +SGG DS+ LL LH + R F A+ V H L A ++ D Sbjct: 21 PSHTVFEVGLSGGLDSVVLLHLLHRM---REFRYFDLRAVHVHHGLSTNADSWAKFCQDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL +A V K GL AAAR ARY S+ K I I+ AH +DQ+ET Sbjct: 78 CQRLNVALRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + R +GM + + ++ +W RP L R+++ + Q +S+ ED SN D Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPILAFSRQELVEYAQQWGLSFVEDESNED 191 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRS 248 + R +R L ++ F+ L+ + ++ +Y + Sbjct: 192 SGYLRNWMRNQ----ALPQWQQRIPNFEQQICANVRLLQEDLQLLDELIESEYQRISPNG 247 Query: 249 IIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI- 304 I ++S Q + LL+Y LR SLP Y S+ L++ + +++ Sbjct: 248 IFSVSLWRQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLS 301 Query: 305 -GRVVIDRRANFLWITRAVRNLP 326 G +V R F+ + LP Sbjct: 302 DGELVAYRDKLFVCQESEFQKLP 324 >gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165] gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165] Length = 648 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A E R V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + Q GL AR RY + N ++ AH DDQ+E Sbjct: 77 ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279 >gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11] gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Enterococcus sp. 7L76] gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11] Length = 462 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 16 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + W++ + Q L A AR RY E + A ++MTAH DDQ ET+ Sbjct: 73 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R +G+ + + + RP L +E++ F ++ + ED +N Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253 + + R R+R V L L + +F D +N I + + + + + Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245 Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301 + I L LL+ + A + +P R M +++ L ++ Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302 Query: 302 VSI 304 S+ Sbjct: 303 GSV 305 >gi|237723186|ref|ZP_04553667.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447708|gb|EEO53499.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 426 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 136/392 (34%), Gaps = 65/392 (16%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE F A +L+A+SGG+DS+ LL LH+ A + LR E Sbjct: 10 IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R I + + + Q + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L RED+ + Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDVIHY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + D +N +D + R ++R + + K D +N+ + Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231 Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291 I IS + +LF +L G+ S + Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338 L + GK+ C RV+ DR N + I + + L P + + Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILPPFQIIKEEKEYTPAFLIPRDKGIA 340 Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361 D Y+ D+ I G + +K Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372 >gi|270264801|ref|ZP_06193065.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13] gi|270041099|gb|EFA14199.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13] Length = 441 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 94/423 (22%), Positives = 162/423 (38%), Gaps = 28/423 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L H+LVA SGG DS LL L + R + ++ A+ V H L A + V + Sbjct: 17 RQLGTKRHLLVAFSGGLDSSVLLHLLVGLR--RQWPDLQLRAVHVHHGLSAFADEWVAHC 74 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C+ ++ V + G+ AAAR ARY+ + +++TA DDQ E Sbjct: 75 QRQCAAWQLPLVVQHVQVDGRLGGIEAAARAARYSAFAATLAA--DEVLLTAQHLDDQCE 132 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R GLS M N + RP L R + + Q ++W ED S Sbjct: 133 TFLLALKRGSGP--AGLSAMAAQASLGSNP-LLRPLLGMSRLQLEDYAQQHQLTWIEDDS 189 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D RF+R +R V + L+ + + L+ + L +++++ Sbjct: 190 NQDPRFDRNFLRLQVLPL-LNQRWPYFAAATARSASLCAEQEQLLDELLAEQLQALLDED 248 Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 +L S F LLR A+ G +++P ++R+ + + G Sbjct: 249 NALAIDGLLGCSSARRFALLRRWIALFG--VTMPSREQLQRLWDEVALCRDDAEPKLQPG 306 Query: 306 RVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 I R L++ + +L + L E + DG + + + PQ +K Sbjct: 307 PYQIRRFRRRLYLLPIMADLREVSLDWSLAEALELPDGLGKLSSGEGDICLRAPQPQQKV 366 Query: 363 DV---PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK---FDLPVAYAFSISFGKVF 416 V G I+ + + + + P+ R T +D + A + + Sbjct: 367 SVRFAAQGKIRILGRAHSRPVKKLW-QELGVPPWQRERTPLIYYDDQLIAALGVFVSEAG 425 Query: 417 IPR 419 P Sbjct: 426 QPP 428 >gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 4b H7858] gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459] gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes] gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes str. 4b H7858] gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott A] Length = 648 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANEQNVVEAFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + Q G+ AR RY + + AH DDQ+E Sbjct: 77 ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + + N + L + + Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279 >gi|293372701|ref|ZP_06619083.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f] gi|292632510|gb|EFF51106.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f] Length = 426 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 124/337 (36%), Gaps = 45/337 (13%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE F IL+A+SGG+DS+ LL LH+ A + LR Sbjct: 10 IEKEHLFS----PDDKILIALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ I + + ++ + AARE RY + K A Sbjct: 59 ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKKCQAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH DD +ET+ + R G+ + N I RP L RE+I + Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEIIRY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + D +N +D + R ++R + + + L D+ N Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLVDTSNYLNDVATIYNKC 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291 + K +T I + ++ +LF +L ++ + Sbjct: 232 IEETKKKIITAEGIRICDLVKEP--APEAILFEVL---------HPLGFNSAQIKDIAHS 280 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 L + GK+ C RV+ DR FL I A TL Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE--FLLIETAESKNETL 315 >gi|325264332|ref|ZP_08131063.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5] gi|324030403|gb|EGB91687.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5] Length = 470 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 60/293 (20%), Positives = 106/293 (36%), Gaps = 24/293 (8%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEV 70 F + ++ +SGG+DS+ LL L + + I+ A+ V+H LR A + Sbjct: 10 FYHMIENGDKVIAGISGGADSVCLLFVLLKLREEMG---IEIVAVHVNHGLRGEAAKRDE 66 Query: 71 RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +V ++C R+ V K + + A R R + T I AH Sbjct: 67 EFVQELCREHRVKCVVYRENVESISKKRKQSVEEAGRVVRREAFEKTLVECGGTKIAMAH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D ET+ M R KG+G + + I RP L R +I ++ Sbjct: 127 HQNDNAETLLMNLARGTGLKGLG-------GIQPVAGKIIRPLLCLNRREIEQYVEAIGC 179 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238 +C D +N +D + R R+R V + + + M++ + L+ + Sbjct: 180 GYCRDETNDEDDYTRNRLRHQVIPVLEEQVNAQAVRHMNEAMEQIRGLQDYMEIQTEEAY 239 Query: 239 PKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + I D ++ L L+R G +E V Sbjct: 240 RDCVAEREDGALCIHADEYRSLHQVLQGLLIRKCLGRAAGAERDITMAHVEAV 292 >gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 442 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 143/400 (35%), Gaps = 37/400 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + S R L I VA+SGG DS+ LL + + + A + H L++ Sbjct: 1 MASSRKSQSKLKSQKRIAVALSGGLDSVVLLDTVCKAQTTYKDSPTEIWAFHIHHGLQKP 60 Query: 66 AKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A D + + + + +I ++ Q + A AR RY ++E ++ Sbjct: 61 ADDWLIFCEKLAKKYKIGFDFRLLHLAQDTDQGNVEARARAGRYEALAELCVEYGIGDLL 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLL 182 AH +DQ ETV ++ R G+ + +D + + RP L R ++ + Sbjct: 121 LAHHQNDQAETVLLQLLRGAGVAGLSGMPHERELTHDQSRITLWRPLLNQSRAELEVYAK 180 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---- 238 + W EDPSN +F R +R+ + + ++ A A+L Sbjct: 181 ANKLKWIEDPSNQKTQFRRNAIRKQIIPRLEKIQPAAVANLARSANLMSEAQALLDRLAK 240 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---K 295 ++ ++ +AI ++ S L V + Q+ +P ++ L L + Sbjct: 241 EDGKSILLKDGVAIKPLLILAQSDLGAANNVVRYWLKTHQLGMPSQERLQAWWLDLQNTR 300 Query: 296 SGKRGCVSIGRVVIDRRANFL---------WITRAVRNLPTLILYPEETTVW------DG 340 + V + L WI + +P+ W +G Sbjct: 301 QDAQLEWLHDGVSLRVWRGHLQAITKTSGRWI---FQAIPSKSQRLGLAAAWVKNAQENG 357 Query: 341 RYQFQ-NLSDSLIQIGPQSYRK--------ADVPSGIPPI 371 R +F+ IQI P S RK +D+P Sbjct: 358 RVEFRMRSGSEKIQIKPNSPRKTLKNLFQESDIPPWQRQA 397 >gi|210623231|ref|ZP_03293670.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275] gi|210153768|gb|EEA84774.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275] Length = 461 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 67/323 (20%), Positives = 124/323 (38%), Gaps = 25/323 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 Y I+V +SGG DS+ LL L+ + R+ +K A ++H +R A+ + +VS++ Sbjct: 18 YGDKIIVGLSGGPDSVCLLHILNRLKESRN---LKIYAAHLNHQIRGIEAQKDALFVSEL 74 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I + S K L AR RY + E + A I H +DQ Sbjct: 75 CDSLEIPVFIKSVDVPKYCEEKGLSLEEGARNIRYDMFYEIKRRTGANKIAIGHNMNDQA 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R +G+ I Y I RP L R+DI ++ Q + D Sbjct: 135 ETVMMRIMRGTGLQGL------RGIEYTRENGIIRPILDIERKDIEAYCEQHELHPKIDQ 188 Query: 193 SNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +N + + R R+R + + + +++ + T+ Sbjct: 189 TNLESIYTRNRIRLELLPYMQEHFNSNVVESIVRLSNSMKSDGDYLDSEAMKAYDEVATL 248 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-- 302 +++ + + + ++R + G + + +E V+ + + K G + Sbjct: 249 DDKAVEVNVEKLSGYHEAIQSRIIRYAIKDVLGDTNFVDQKHIEDVIQLIDTSKNGKMLN 308 Query: 303 -SIGRVVIDRRANFLWITRAVRN 324 G R + L+ ++ Sbjct: 309 LPRGVFAYRRANSILFTLEEIKE 331 >gi|239993621|ref|ZP_04714145.1| cell cycle protein MesJ [Alteromonas macleodii ATCC 27126] Length = 441 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 123/334 (36%), Gaps = 24/334 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L ++VA SGG DS LL A V++ R A+ V H L + A+ ++ Sbjct: 24 ELPLQTPLVVAYSGGVDSTVLLQA---VIAYREQFDSPIHAVHVHHSLSDNAEQWAKHCE 80 Query: 75 DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +A + + L A AR+ RY + E I +++ +DQLE Sbjct: 81 LQCRLEDVAFHLYRVDVDTGSRKSLEAEARKVRYNALLEVCDQIGG-VLLLGQHAEDQLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV ++ +R +G+ G + Y + I RP L + +I ++ + + W ED S Sbjct: 140 TVLLQLKRGAGPQGLAGMG---EVQYRGDTLIMRPMLALEKAEIVAYAEEEMLQWVEDES 196 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N + F+R +R + + L + K + A + Sbjct: 197 NQQNSFDRNFLRNEI----IPHLLARWPKLTKTVGRSAELCAEQSALVSDSAQKYFEDCK 252 Query: 254 QDILNIDSTLLFYLLRVSAAIC------GGQISLPGYRSMERVMLFLKSGKRGC----VS 303 + L +D L L A+ P ++V+ LK+ Sbjct: 253 RTDLRLDGQQLAALSLPWQAMVIRAWFRAQGELSPSKAQTDQVLAMLKAKHDATPEVNFK 312 Query: 304 IGRVVIDRRANFLWITRAVRNLPT-LILYPEETT 336 GR VI + W+ A +P L L P + Sbjct: 313 WGR-VIRFDQDLYWVVNATHEVPQNLKLVPNQNI 345 >gi|218130045|ref|ZP_03458849.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697] gi|217987765|gb|EEC54092.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697] Length = 426 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 46/329 (13%) Query: 7 ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ + L P +++A+SGG+DS+ LL L ++ A + LR Sbjct: 4 ERVAQYINQKRLFMPTDKVIIALSGGADSVALLCLLQTL-------GYNCEAAHCNFHLR 56 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 + + +V +C++ ++ +V + + + AARE RY E + Sbjct: 57 GKESDRDEAFVCQLCAKRQVPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSG 116 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A +I AH DD +ET+ + R G+ + N I RP L R++I Sbjct: 117 ANVIAVAHHRDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRKEII 169 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231 ++L + + D +N D + R ++R + + +++ + ++ + Sbjct: 170 NYLNRTGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESIFNTAEHLSEVSIIYK 229 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMER 289 ++ + T I A+ Q+ TLLF +L G+ + Sbjct: 230 KSIEEATKRVQTTEGICIDALMQET--APETLLFEIL-----------YPLGFNAAQIRD 276 Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL 316 + L + GK RVV DR+ + Sbjct: 277 IYRALEGQPGKTFSSEHWRVVKDRKYLLI 305 >gi|158319482|ref|YP_001511989.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs] gi|158139681|gb|ABW17993.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs] Length = 463 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 62/300 (20%), Positives = 124/300 (41%), Gaps = 24/300 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 + I+VA+SGG DS+ LL L+ + R ++ ++H R A+ + +YV+++ Sbjct: 17 WGDRIIVAISGGPDSVCLLHNLYQL---REEYNLELYGAHLNHNFRGIDAQVDAQYVANL 73 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I + V + A R RY E A+ + A I AH +DQ Sbjct: 74 CEELNILCFIKSMDVPQYAKEKGLSSEEAGRILRYEFFDEIAEQVGANKIAVAHNENDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R +G+ T ++ I RP L R+ I + + +S D Sbjct: 134 ETVLMRLLRGTGLQGL-------TAIHINRGRIIRPLLGVDRKSIEEYCEKYQLSPRIDK 186 Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +N + ++R ++R + + L + ++ + + +T Sbjct: 187 TNLESIYKRNKIRLELIPYLEEHYNPNIIENLVRTAEILKEDFDFIEEQSREIYSGLMTN 246 Query: 245 HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + + + N+ + ++R++A G+ + Y+ ++ V+ ++ G G + Sbjct: 247 QNEFSLTLPLEAIRNLHPAIKSRVIRLAAEQLLGRQEILEYKHVQNVLDLVEKGATGKKT 306 >gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J2-071] gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J2-071] Length = 648 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSDLVSKEAISVAHLNHHLRENAANEQNVVETFC 76 Query: 78 SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + + Q G+ AR RY + N + AH DDQ+E Sbjct: 77 ERHGIPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I ++ + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + ++Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPSVYAHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLTSFKNEANPLQRRAIHLLL 279 >gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus italicus DSM 15952] gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Enterococcus italicus DSM 15952] Length = 457 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 153/370 (41%), Gaps = 34/370 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +R F +L+AVS G DSM LL L S ++D + + + V+H LR ++ Sbjct: 11 QIRQFANQ-----DVLLAVSTGVDSMVLLDLLISSVTDIQ----RIAVVHVNHGLRPESE 61 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E +++ C ++ +W + + + A AR+ RY + +++TAH Sbjct: 62 KEACFINAYCKEHQLDFFQANWTPT--SSNIEANARQFRYDFFKKIMNEQGYKVLLTAHH 119 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLET+ M++ RD L G+ + + N + RP L ++ + + +R ++ Sbjct: 120 RDDQLETMLMKAIRDGQL--TALKGIVASQPFA-NGQLVRPLLPYDKQTLYDYAKRRELT 176 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + ED +N D + R R+R+ V + + FQ + +V + A L+ + L + Sbjct: 177 YFEDETNQDSLYFRNRMRQQVVPLLKKEHPQVTEHFQQIAKQVEDNEA-LLEEVLWEQEK 235 Query: 248 SIIAISQDILNID--------STLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGK 298 + + ++D + YLL +A I ++ + + + + L K Sbjct: 236 GMFKKTTTGWSLDLSLFQKRSPLVKKYLLEKAAQIVRSTGTVALSQKQINQTLTLLDEHK 295 Query: 299 RG--CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-------VWDGRYQFQNLSD 349 VI R L + + + E T W G +Q + + Sbjct: 296 SQWLLNIAHGWVIRRAYQTLVLEKKPEQQERQAVTLMEGTQLYLSDHQWIGLFQ-SPVDE 354 Query: 350 SLIQIGPQSY 359 SL+ Q++ Sbjct: 355 SLLPPKVQTW 364 >gi|317476539|ref|ZP_07935786.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA] gi|316907282|gb|EFV28989.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA] Length = 370 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 46/329 (13%) Query: 7 ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ + L P +++A+SGG+DS+ LL L ++ A + LR Sbjct: 4 ERVAQYINQKRLFMPTDKVIIALSGGADSVALLCLLQTL-------GYNCEAAHCNFHLR 56 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 + + +V +C++ ++ +V + + + AARE RY E + Sbjct: 57 GKESDRDEAFVCQLCAKRQVPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSG 116 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A +I AH DD +ET+ + R G+ + N I RP L R++I Sbjct: 117 ANVIAVAHHRDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRKEII 169 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231 ++L + + D +N D + R ++R + + +++ + ++ + Sbjct: 170 NYLNRTGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESIFNTAEHLSEVSIIYK 229 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMER 289 ++ + T I A+ Q+ TLLF +L G+ + Sbjct: 230 KSIEEATKRVQTTEGICIDALMQET--APETLLFEIL-----------YPLGFNAAQIRD 276 Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL 316 + L + GK RVV DR+ + Sbjct: 277 IYRALEGQPGKTFSSEHWRVVKDRKYLLI 305 >gi|90020884|ref|YP_526711.1| GntR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950484|gb|ABD80499.1| transcriptional regulator, GntR family [Saccharophagus degradans 2-40] Length = 429 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 26/316 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L A + VA SGG DS LL AL + +K A+ V+H L A + R Sbjct: 12 ITALSPQACVWVAFSGGLDSTVLLHALSVL-------GVKCHAVHVNHGLSINADNWQRQ 64 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 S S+ IA + V S G+ AAR ARY I + +++T H DDQ+ Sbjct: 65 CSVFASQREIAFTAVKVIVSAEGRGIEEAARVARYNAIENLLAP--SDVLLTGHHRDDQI 122 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET ++R R +G+G ++ + + RP L R+ + + LQ+ ++W ED Sbjct: 123 ETFFLRLMRGAGLRGLGAMRRTRSLSQAI---LVRPLLNISRQSLHEYALQQGLTWIEDE 179 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D ++R +R+ L A + +++K + V+ A L+ +Y + + Sbjct: 180 SNLDTHYDRNLLRQTFVP-QLKARWPQVEKNVETTVQHLQAAEDLLQEYAAADLALCESR 238 Query: 253 SQDILN---------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGC 301 + + + ++LR A G LP M + ++ K Sbjct: 239 QERLGCSIALNPMRAFSTERTSHILRSWLASLG--YKLPDTARMVELHKIIAAKDDAAPL 296 Query: 302 VSIGRVVIDRRANFLW 317 ++IG + R L+ Sbjct: 297 LNIGDYSLCRFQQRLY 312 >gi|225375860|ref|ZP_03753081.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM 16841] gi|225212295|gb|EEG94649.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM 16841] Length = 487 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 139/369 (37%), Gaps = 38/369 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +L VSGG+DS+ LL+ L + F A+ V+H +R E ++ + +V ++C Sbjct: 21 VLAGVSGGADSVCLLLMLEQLQKKTDFL---LEAVHVEHGIRGEESRKDAAFVKNLCQDH 77 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT------LIMTAHTFDD 130 I + S + K GL AAR RY + A+++ + AH +D Sbjct: 78 GIRCHIFSVEVPLFAEKHGLGLEEAARILRYDCYKKAAESVKKEFPEKKIKLALAHHAED 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV + R G L GM + + RP L RE+I +FL + S+C Sbjct: 138 NAETVLFQMVRGSGLDG--LCGMSRRRDEGI-YELIRPLLAQPREEIEAFLRECGQSYCM 194 Query: 191 DPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D +N D + R R+R V + + Q++R +N + Y+ Sbjct: 195 DETNLDTEYSRNRIRHQVLPELKQINGQAVAHINQSAALLQEMRDFLNEEAEHIREMYVV 254 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGC 301 I S + +L + G + +E R + F + G+ Sbjct: 255 EKSDGIQLYSGVWEECHEVVQREVLHKAIGQVAGSKKDITRKHVESVRNLYFSQVGRYVE 314 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + +V+ +R + + + + D + + +SL ++ + Sbjct: 315 LP-YQVLAERNYHGILLRKETEKKRA-----------DNTFLIEIPKESLQKVFDGETLE 362 Query: 362 ADVPSGIPP 370 +VP G Sbjct: 363 LEVPGGRVR 371 >gi|237745448|ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] gi|229376799|gb|EEO26890.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS] Length = 468 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 126/310 (40%), Gaps = 16/310 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I +A SGG DS LL H ++++ I+ A + H L A + + C Sbjct: 39 IAIAYSGGLDSTVLLHCAHRFAAEKN---IRLFAFHIHHGLNRKADAWLNHCEAACMEQG 95 Query: 82 IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + G+ A AR RYA + E + TL++TAH DDQ+ETV M Sbjct: 96 IRFESRKVRVDRGSGDGIEAEARSKRYAALGEMCRKNEVTLLLTAHHEDDQVETVLMHLM 155 Query: 141 RDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ +L D W+ RPFL RE++ S+ +N+S ED SN D Sbjct: 156 RGTGIAGLAGMDSVTQAPELLGDTKTWVGRPFLSLSREELASWAKAKNLSCVEDDSNNDT 215 Query: 198 RFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + + ++ + N + + L + S A+ Sbjct: 216 KYTRNAIRHRLIPVLSDMFPGFGNRLSRMAQHARSANKVLNETGRQDLEMCRISQNALDL 275 Query: 255 -DILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVID 310 + + L R + I +P YR ++ ++ ++ + + + V+ Sbjct: 276 VKAGKLGPDRMDNLFR--CWLIENGIRIPSASWYRQAKKQIVDSRADAQVDLPLKGYVLR 333 Query: 311 RRANFLWITR 320 + N +++ + Sbjct: 334 KYRNRVFLEK 343 >gi|225571157|ref|ZP_03780155.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM 15053] gi|225159988|gb|EEG72607.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM 15053] Length = 477 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 137/332 (41%), Gaps = 37/332 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72 L ++ VSGG+DS+ LL L + + F +A+ V H LR A + +Y Sbjct: 34 HMLQQSDRVIAGVSGGADSICLLFVLLELKKEIGF---SVTAVHVHHGLRAETADRDAQY 90 Query: 73 VSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C ++ H V ++ + + A RE R A E + T I AH Sbjct: 91 VEKICREQKVELLVYHEDVKTYAAEHKLTVEEAGREVRRAAFKEVLRKKQGTKIALAHHQ 150 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D ET+ + R KGMG I +WI P L +R+++ S+L +R IS+ Sbjct: 151 NDNAETLLLNLCRGTGLKGMG------GIPPVEGVWI-HPLLCLKRKEVESYLEERGISY 203 Query: 189 CEDPSNTDDRFERVRVRRFV-----RDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPK 240 C D +N++D + R ++R V ++I+ A + ++ + L V++ A Sbjct: 204 CTDETNSEDSYARNKIRNQVIPYLEKEINAQASEHMAETARQMRLLGAYVDSQAAEQEKA 263 Query: 241 YLTVHMRSI-IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----- 294 + + + ++ + L Y++ G +++E V + L Sbjct: 264 CVDTDGAGRSLLLKKEFARVPEVLRPYVIHRILCRTAG-----RSKNIEAVHVRLITELM 318 Query: 295 --KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 + G+R C+ G + + T+ R Sbjct: 319 HRQVGRRLCLPYGVTAVRCYE-GIRFTKEGRQ 349 >gi|254832460|ref|ZP_05237115.1| hypothetical protein Lmon1_13981 [Listeria monocytogenes 10403S] Length = 648 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A E R V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSDLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + Q GL AR RY + N ++ AH DDQ+E Sbjct: 77 ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279 >gi|254481735|ref|ZP_05094978.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] gi|214037864|gb|EEB78528.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] Length = 451 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 69/362 (19%), Positives = 131/362 (36%), Gaps = 26/362 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H VA SGG DS LL ++S +A+ ++H L+ A D + + +C L Sbjct: 22 HWYVAYSGGVDSTALLQLINSWCKANGQAP-PLTALHINHGLQAQAADWENHCAWICRFL 80 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ G+ +AAR+ARYA E + ++ H DDQ+ET ++R Sbjct: 81 DVPFLALNVDVDPDGRGVESAARQARYARFEEQLEE--GEVLFFGHHQDDQVETFFLRLL 138 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ + + RP L R + +++ + + + EDPSN D + Sbjct: 139 RGAGVDGLAAMPRQRGL---GKGLLLRPLLDYSRAQLEAYVEAQGLRYIEDPSNQDVSLD 195 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIA-----I 252 R +R+ V L L + ++ + +A +T+ A + Sbjct: 196 RNYLRQDV----LPVLASRWPGYRQTITRAAGHLASVSGARESAVTIPQTCFSALGDPGL 251 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVI 309 +L +D + L+ + G P ++ + L++ R ++ G + Sbjct: 252 PGGVLKVDDQVQAALVLR-GWLKSGGYQAPDQSVLDEFLRQLRASTGDARPQLNSGSYRL 310 Query: 310 DRRANFLWITRAVRNL--PTLILYPEETTVWD--GRYQFQNLSDSLIQIGPQSYRKADVP 365 R +++ L + P GR + I + Sbjct: 311 QRYKEAIYLLPEDPGPVDQELAIAPGGVIEIPGVGRISLRRTESEGIWLAADESLSLQWR 370 Query: 366 SG 367 G Sbjct: 371 DG 372 >gi|330830699|ref|YP_004393651.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565] gi|328805835|gb|AEB51034.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565] Length = 452 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 17/304 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS LL+ + + SA+ V H L A + V + VC +L Sbjct: 22 LLVAFSGGLDSTLLLVLAAQYAREHG---LPLSALHVHHGLSPHADEWVAHCEAVCQQLA 78 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + L A AR ARY ++ + ++TAH DDQLET+ + + Sbjct: 79 VELLVERVTLIRGNGESLEAQARTARYQRLTARMRE--GEWLLTAHHQDDQLETLLLALK 136 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G L+G+ + + L + RP L R ++ W ED SN + ++ Sbjct: 137 RGAGLRG--LAGILPSQPFAGGL-LLRPLLDMSRAELADAAASLPFGWVEDESNQEVSYD 193 Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R+ + A+ + L + + L + + Sbjct: 194 RNFLRQTLIPQLKARWPAMAQTAARSMALCAEQEALLEELAESDWQLAGEGEALHIGPLH 253 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314 + T LLR GG+ +P + R+ + ++ GR R Sbjct: 254 ALSPTRRNNLLRYWIRRQGGE--MPSREQLARLWQEVALARGDANPRLNWGRQSCRRFQE 311 Query: 315 FLWI 318 L++ Sbjct: 312 RLYL 315 >gi|282850013|ref|ZP_06259395.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745] gi|282580202|gb|EFB85603.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745] Length = 332 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 132/307 (42%), Gaps = 16/307 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ILVA SGG DSM LL L + + R + VDHC+R +KDEV ++ + L Sbjct: 25 RILVACSGGPDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRLESKDEVLWLRNQADVL 83 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + K + R+ RY ++ A++ I AH DDQ E++ Sbjct: 84 GLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTGIAQSEGYDYIAVAHHKDDQAESIL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G L+GM + D + + RP L +E++ +L +++IS+C D +N D Sbjct: 144 AHLIRGTGLNG--LTGMA-VVSNDYIVPVVRPLLDVTKEELLLYLKEKDISYCIDSTNED 200 Query: 197 DRFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 R++R R+R + I + A+ ++ ++N M + +T+ Sbjct: 201 VRYQRNRIRHRIIPELKAINPIVIDAIVRLGASVREDISLISNLTDMAFDELVTISDEGA 260 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + + L + +I +I L E+++ + +G++ +I + + Sbjct: 261 FISRRGLRKKPLAIQRRLWQRLVSIFDPEIKL-TTAHQEQLLDIVNTGEKKTFNIKSIKV 319 Query: 310 DRRANFL 316 + + + Sbjct: 320 SAQCDTI 326 >gi|332307488|ref|YP_004435339.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174817|gb|AEE24071.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 466 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 81/316 (25%), Positives = 132/316 (41%), Gaps = 17/316 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL+ H +VA S G DS LL AL + + SAI + H L E A ++ + Sbjct: 17 SLLPSRHFVVAYSAGIDSHVLLHALWRLQQVKKTP-FTLSAIYIHHGLSENADLWQQHCA 75 Query: 75 DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 DVC L I + G+ A AREARYA + E A T ++IM A DDQLE Sbjct: 76 DVCDALNIEFASAKVTLDFSNGKGIEAQAREARYAKLVEMAPT--DSVIMLAQHQDDQLE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 TV ++ +R KG+ G T N+ RP L ++ I+ + ++++ W Sbjct: 134 TVLLQLKRGAGPKGLSGMGTYFTSDKLGASQQNVHFFRPLLDISQQQIQHYAKEQSLVWQ 193 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED SN + FER +RR V + L+ + + + K+ L+ + +T+ Sbjct: 194 EDESNQNTDFERNFIRRDVAPL-LNERWPHIAQSVSRSAKLCAEQQALLEE-VTLEKLQP 251 Query: 250 IAISQDILNIDSTL----LFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCV 302 + + L + L + L V + I P + ++ +L + Sbjct: 252 LRKPNNTLCVKGLLALTEAWRLQVVRLWLDEQNILSPSQAILTQLSNELLLSAKDANPII 311 Query: 303 SIGRVVIDRRANFLWI 318 R + L++ Sbjct: 312 QWQSWQFRRFEDALYV 327 >gi|262276510|ref|ZP_06054319.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886] gi|262220318|gb|EEY71634.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886] Length = 440 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 136/353 (38%), Gaps = 31/353 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P I++A SGG DS +L L + + ++ I + H L A + + Sbjct: 15 PQPRQIVLAFSGGVDSRVMLDLLATYRD--IHPQHRYLVIHIHHGLSPNADEWMMRCEAW 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + A + ++ + L AAREARY I H + N L++T DDQ ET Sbjct: 73 ATEADFAFKGIRVSLNQREGNLENAAREARYQAILNHVE--NDALVLTGQHADDQAETFL 130 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R G+ + + + + + RP L R I + + +SW ED SN D Sbjct: 131 LALKRGSGPAGLAAMPVTRPLGHAV---LCRPLLSITRAVIERYAEDQGLSWLEDESNLD 187 Query: 197 DRFERVRVRRF---VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 RF+R +R+ + + + + + + L+ Y M + +S Sbjct: 188 CRFDRNFIRQQWLPMAQERWPGMVKAINRTARHCAEQEALLDELLSGYDHQVMLADGGLS 247 Query: 254 QDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 L N+ + + L+ +A + + + R ++ ++ + +G V Sbjct: 248 ISALMALSGNMQTAMTRRWLKKTAGVVPSSVQM---RELQVSVIESAQDANPSLQLGPVD 304 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQS 358 + R L++ +++ W G+ + L D L +I Q+ Sbjct: 305 VRRYQGTLYVVPPHQDVSA----------WTGQLEIGETLGLPDGLGEIALQT 347 >gi|254228405|ref|ZP_04921831.1| PP-loop family [Vibrio sp. Ex25] gi|151938993|gb|EDN57825.1| PP-loop family [Vibrio sp. Ex25] Length = 449 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 18/322 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +++A SGG DS LL L S I+ A+ V H L A D Sbjct: 27 RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKC 83 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ I+ S+ + + AREARY ++++ + +++T DDQL Sbjct: 84 LLWAKQVGISCSIELVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQL 141 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M +++ + + RP L +R+ I + + W ED Sbjct: 142 ETFLLALKRGSGPKG--LSSMAESMPFSSG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 198 Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R V +++ +++ L + + L+ +++ Sbjct: 199 SNQDTRYDRNFLRHCVIPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 258 Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 +++S + L S L L+R+ A S+P + + + + + Sbjct: 259 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 316 Query: 306 RVVIDRRANFLWITRAVRNLPT 327 + + R N L+ + ++ Sbjct: 317 QGEVRRFRNRLYWVTEIADVTE 338 >gi|188533056|ref|YP_001906853.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99] gi|188028098|emb|CAO95955.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99] Length = 433 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 143/358 (39%), Gaps = 26/358 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ + +SL +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAIAYLEQSLAAEHAVLLAYSGGLDSSVLLHQLVQLRERR--PQLRLRAVHIHHGLNPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A + C+R ++ V+ + + G+ AAAR+ARY + HA+ ++TA Sbjct: 59 ADGWAAHCQQQCARWQVPLMVIRVQVDAREGGIEAAARQARYRAL--HAQLEAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + + + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGDRRHL---RPLLAQSRQQLECWAHRHQ 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + W ED SN D R++R +R V + L + F + + Sbjct: 174 LDWIEDDSNQDARYDRNFLRLRVMPL----LNQRWPHFASAVARSAQLCGEQEHLLDELL 229 Query: 246 MRSIIAISQD--ILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKS 296 S+ A+ + LN L +R A I S+P +++R+ ++ Sbjct: 230 SESLDALVDESGALNFTPLLAMSDVRRFALLRRWIARQHGSMPSRDALQRLWQEVACSRA 289 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 + IGR + R + L+ ++ L + L W ++ L D L ++ Sbjct: 290 DADPRLRIGRSEVRRFRDRLYWLSPLQPLGSCRLA------WPAPWRPLTLPDDLGEL 341 >gi|153835638|ref|ZP_01988305.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi HY01] gi|148867745|gb|EDL67002.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi HY01] Length = 448 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 22/329 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66 R I++A SGG DS LL L S K A+ V H L A Sbjct: 14 RYHQPNTKIVLAFSGGVDSRLLLELLSRYQQAYSIDNQLTDSHSFKCHAVYVHHGLSSNA 73 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + I +SV ++ + AREARY +++H ++ L++T Sbjct: 74 DEWADKCLVWAEQAGITYSVERVSLDTNSGESIELLAREARYQALAKHIQS--GDLLLTG 131 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ+ET + +R KG LS M +++ + + + RP L +RE I + ++ Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFAGGI-LVRPLLAIKREQIEAVAREQK 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W ED SN D R++R +R + +++ +++ L + + L+ Sbjct: 189 LDWVEDESNQDIRYDRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLSAVF 248 Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 ++S ++S + L S L L+R+ A ++P + + + Sbjct: 249 ERALQSDFSLSIEELATHSELARARLVRMWLAKL--NANMPTQVQLNLIWNEVALAQQDA 306 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327 + + + + R N L+ ++ T Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETVDVTT 335 >gi|126701186|ref|YP_001090083.1| putative ATPase [Clostridium difficile 630] gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26] gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932] gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255] gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55] gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34] gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79] gi|260685080|ref|YP_003216365.1| putative ATPase [Clostridium difficile CD196] gi|260688738|ref|YP_003219872.1| putative ATPase [Clostridium difficile R20291] gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58] gi|122973554|sp|Q181G3|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium difficile] gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196] gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291] Length = 462 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 25/320 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + I++ +SGG DS+ LL L+ + D I+ A ++H +R A+ + YVS Sbjct: 16 IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C + I V S K L AR+ RY + E I A I H +D Sbjct: 73 KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV MR R KG+ I Y + I RP L R +I + N++ Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRI 186 Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D +N ++ + R ++R + + ++ + + + Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246 Query: 243 TVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300 + + + I+ D + + + +LR S G + R +E +M + K Sbjct: 247 NIKEKGFVEINLDDFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306 Query: 301 CVSIGRVV-IDRRANFLWIT 319 +++ R + + R+ + + +T Sbjct: 307 MLTLPRNIFVYRKKDSIILT 326 >gi|322381177|ref|ZP_08055180.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154753|gb|EFX47024.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 479 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 29/319 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ LL L+ + ++ + K A V+H R E + +E +YV S L Sbjct: 23 VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V V + AARE RY + + A NA I AH DDQ ETV Sbjct: 80 GIPCEVGVIDVPAYIRETSLNPQVAAREKRYEFLHKIANVYNADKIALAHHADDQAETVL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G+ + + N+ + RP LR + ++ S+ + + + D SN Sbjct: 140 MRIVRGTGLSGLTGIPIKRK---EKNVELVRPMLRIYKNEVISYCHEHQLHFFRDSSNDS 196 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAIS 253 ++ R +VR V L L + + ++ V + + M S++ Sbjct: 197 RKYFRNQVRLDV----LPFLSSYNEHLPEALNRLAEMVKGEDDYMDEQARREMSSLVKCQ 252 Query: 254 QD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 +D L++ L ++++ Q + ++E++ L + V + Sbjct: 253 KDSYSFGRTAFLSLHLALQRRVIKLILNYLALQAEKIDFITVEQIRLAILQDAHSNVRLN 312 Query: 306 ---RVVIDRRANFLWITRA 321 ++ R + I + Sbjct: 313 LPEELLFIREYEAIRIQKE 331 >gi|261380143|ref|ZP_05984716.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703] gi|284796980|gb|EFC52327.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703] Length = 441 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 133/316 (42%), Gaps = 32/316 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL LH + R F A+ V H L A ++ D C RL +A Sbjct: 28 VGLSGGLDSVVLLHLLHRM---REFRHFDLRAVHVHHGLSTNADSWAKFCQDYCQRLDVA 84 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V GL AAAR ARY S+ + I I+ AH +DQ+ET + + R Sbjct: 85 LRVCRVNVQNQGKGLEAAARAARYQAFSDGLRKI----IVLAHHHNDQIETFMLSAVRGG 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +GM + + ++ +W RP L R+++ + Q +S+ ED SN D + R Sbjct: 141 GLRGMAAMPVWRNLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNEDSGYLRNW 198 Query: 204 VRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253 +R L ++ F+ L+ + ++ +Y + I +IS Sbjct: 199 MRNQ----ALPQWQQRIPNFEQQICANVRLLQEDLQLLDELIESEYQRISPNGIFSISLW 254 Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVID 310 Q + LL+Y LR SLP Y S+ L++ + +++ G +V Sbjct: 255 RQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLPDGELVAY 308 Query: 311 RRANFLWITRAVRNLP 326 R F+ + LP Sbjct: 309 RDKLFVCQESEFQKLP 324 >gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM] gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Riemerella anatipestifer RA-GD] Length = 427 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 L+AVSGG+DSM L + + K +++ LR E + + V + C + Sbjct: 22 QFLLAVSGGADSMVLAHLMKQI-------DAKIEIAHINYKLRSEDSDKDAALVQEFCEK 74 Query: 80 LRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I VS K+ KP + ARE RY K + + ++TAH +DQLET + Sbjct: 75 HHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLETFII 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R KG+ + + I RP L +E+I F +I++ ED SN Sbjct: 135 NLSRGSGIKGLA-------GIPNNENEILRPLLDFSKEEIYHFAEAHSIAFREDKSNQKQ 187 Query: 198 RFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + R ++R + L + + + +N + I ++ I Sbjct: 188 DYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSEAKYFINQQIEYKIKEFSISTECKTI 247 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + S + F +L +IS M ++GK + + +I+ Sbjct: 248 IDRHALEKESSFIQFEILNRFGFSNKAEIS---------KMFTAETGKSFYSNGYQCLIN 298 Query: 311 RRANFLWITRAVRNLPTLILYPEE 334 R + + N I P E Sbjct: 299 REQFIISKKEPISNNDEDITLPSE 322 >gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868] gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868] Length = 424 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 L+AVSGG+DSM L + + K +++ LR E + + V + C + Sbjct: 19 QFLLAVSGGADSMVLAHLMKQI-------DAKIEIAHINYKLRSEDSDKDAALVQEFCEK 71 Query: 80 LRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I VS K+ KP + ARE RY K + + ++TAH +DQLET + Sbjct: 72 HHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLETFII 131 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R KG+ + + I RP L +E+I F +I++ ED SN Sbjct: 132 NLSRGSGIKGLA-------GIPNNENEILRPLLDFSKEEIYHFAEAHSIAFREDKSNQKQ 184 Query: 198 RFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + R ++R + L + + + +N + I ++ I Sbjct: 185 DYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSEAKYFINQQIEYKIKEFSISTECKTI 244 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + S + F +L +IS M ++GK + + +I+ Sbjct: 245 IDRHALEKESSFIQFEILNRFGFSNKAEIS---------KMFTAETGKSFYSNGYQCLIN 295 Query: 311 RRANFLWITRAVRNLPTLILYPEE 334 R + + N I P E Sbjct: 296 REQFIISKKEPISNNDEDITLPSE 319 >gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596] gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596] Length = 485 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 126/323 (39%), Gaps = 22/323 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LVAVSGG DS+ LL L K S V+H LRE A E V C + Sbjct: 22 DKLLVAVSGGPDSLALLHFL---RMANLVPKEAISVGHVNHGLRENAVKEQFIVQTYCEK 78 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V+ + G+ AR RY + + ++ AH DDQ+ET+ Sbjct: 79 YDIPFFTEKINVNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAHHADDQIETI 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R + +G SG+ I RPFL + +I + + +++ D SN Sbjct: 139 LMRLVRGSSS--IGWSGIQPKRSMQGGYAI-RPFLTITKSEIIEYANKHELAYEIDESNY 195 Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRS 248 + ++ R R R V + A+Y ++F + + + + L+ K L ++ Sbjct: 196 NPQYTRNRYREEVLPFLTKENPAVYNHFERFSEETSEDFQFLEDLANELLKKNLIKNVEQ 255 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVMLFLKSGKRGCVSIG-- 305 + N + L + + + SL + +++ ++S S+ Sbjct: 256 TTLLLSSFKNEANPLQRRAIHLLLRYLYNEDASLITANHIYQIIQMIQSD-NPSSSLNLP 314 Query: 306 -RVVIDRRANFLWITRAVRNLPT 327 ++V+ R N L R P Sbjct: 315 KKLVVKRSYNELHFQFGDRQAPA 337 >gi|113970960|ref|YP_734753.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4] gi|113885644|gb|ABI39696.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4] Length = 465 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 123/316 (38%), Gaps = 17/316 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +++A SGG DS L L + I V H L A ++ Sbjct: 19 LQTGSKLVLAYSGGVDSEVLAYGLSEFAKHHPELHYQL--IYVHHGLSPNADAWAKHCQT 76 Query: 76 VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + + P+ + A AR RY I +H K +++TAH DDQLET Sbjct: 77 RAASYGLPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQ--DVLLTAHHEDDQLET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDP 192 + + +R KG+ G + RP L RE I F R + ED Sbjct: 135 ILLALKRGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDE 194 Query: 193 SNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN DD+++R +R + ++ + L + V + + L + Sbjct: 195 SNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAQLCAEQQAIVDAEVSERLPKLLTEA 254 Query: 250 IAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLF---LKSGKRGCV 302 Q +L +D+ + L + I +LP Y +++++ K + + Sbjct: 255 SFTQQTVLKLDALSTQTSEWQGLLLRGFIESQGFALPSYVQLQQILQQLMGAKEDAKVQI 314 Query: 303 SIGRVVIDRRANFLWI 318 IG V+ R A L++ Sbjct: 315 QIGDCVLRRFAGMLYL 330 >gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601] gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601] Length = 646 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 27/300 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ILVAVSGG DS+ LL + R F +A+ V+H LR + DE V D Sbjct: 18 LDRNKKILVAVSGGPDSLALLHFIV-----RFFPLQNIAAVHVNHQLRAESLDEETLVHD 72 Query: 76 VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C L + V ++ + G+ AAR RY E + ++TAH DDQ Sbjct: 73 SCQTLGVDLFSRTIDVKAIAAERKKGIEEAARYVRYQCFEEVMQEAGIDQVVTAHHADDQ 132 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ MR R G SG+ + RPFL + DI ++ +++I + D Sbjct: 133 VETIMMRLVRGS--FSSGWSGIAPVRKLGAG-QVIRPFLTASKSDILAYCQRQDIQFALD 189 Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244 +N + F R R+R+ V + + +L ++ +F + + ++ L + Sbjct: 190 DTNEETIFTRNRLRKKVIPLLKAENPSLASQITRFAEETREDFTFLDEQAGELFEACAEL 249 Query: 245 HMRS----IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 ++ + + + + ++ LL + S + +++++L ++ GK Sbjct: 250 ENGGARLDLVLLKKAGIPLQRRVIHLLLNYLY---KNETSYVSTQHIKQILLCIQ-GKNP 305 >gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453] gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453] Length = 476 Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 21/312 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG DS+ LL LH + + ++ V H R + E V ++ RL Sbjct: 29 IVVAVSGGPDSVALLHVLHEI--SLNHTPLRLICAHVHHGFRTESDQEAEMVRELAERLG 86 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + G AARE RY + + A+ NA + AH DDQ ETV M Sbjct: 87 LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTAQKYNARSVALAHHADDQAETVLM 146 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ T + + + RPFLR + DI + D SN Sbjct: 147 RLLRGSGLPGLAGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDNSNLQT 203 Query: 198 RFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSII 250 ++ R +R V + + ++ + V A + + + + Sbjct: 204 KYRRNAIRLEVLPFLEQYNGQFSSSLNQLAEIVQQEDGFVEREAAKQFRRMVQENDGRLA 263 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGR-- 306 + L + L L+++ + +E V + + + + +G Sbjct: 264 FDAPSFLGLHVALQRRLIKLILNYLPSDQENTDFVKIESVRQGILNDQRSNWRLDLGDGI 323 Query: 307 -VVIDRRANFLW 317 V + W Sbjct: 324 TCVREYGQVQFW 335 >gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2] gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2] Length = 482 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 117/324 (36%), Gaps = 22/324 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 SL P I+VAVSGG DS+ LL LH + ++ V H R E + E Sbjct: 20 HSLWSPGDRIVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAE 77 Query: 72 YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V ++ +L++ ++ + G AARE RY+ + + A A I AH Sbjct: 78 EVHNIARKLKLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMAHH 137 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R G+ + + N+ + RP LR + D+ + S Sbjct: 138 GDDQAETVLLHLLRGSGPAGLAGMRLARN---EKNVQLIRPLLRMYKADLIEYCNFHGFS 194 Query: 188 WCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + D +N ++ R +R V + +L + D + A K Sbjct: 195 YVTDSTNLSSKYRRNAIRMDVLPFLGQYNEQLTPSLNRLAETMADENDFMEAATLSAYEK 254 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + + + L L+++ +R +E V L L Sbjct: 255 MVHFNNGRYMFSIASYRKLSVALQRRLIKLILNYLPSGSENFDFRKIETVRLRLLQETSS 314 Query: 301 CVSI---GRVV-IDRRANFLWITR 320 S+ G V + + R Sbjct: 315 TWSLDLGGGAVGVREYDQAVLFDR 338 >gi|58336616|ref|YP_193201.1| cell cycle [Lactobacillus acidophilus NCFM] gi|58253933|gb|AAV42170.1| putative cell cycle [Lactobacillus acidophilus NCFM] Length = 423 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 81/358 (22%), Positives = 149/358 (41%), Gaps = 31/358 (8%) Query: 1 MFLSPIESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M ++ + FF + +LVA SGG DSM LL L + + F + A Sbjct: 1 MLGKFMKIIDFFNEKQIDLENKKLLVAASGGPDSMALLDMLKDLQKKQKF---ELIAAHF 57 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTI 117 +H LR +++E R + D C + I V W KN +P++G+ AAARE RY +++ AK Sbjct: 58 NHQLRSDSEEETRILKDYCQKNEIPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNE 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++TAH DD +E + ++ R + M + + + RP L +++I Sbjct: 118 TADYLLTAHHGDDLIENILLKFIRSGNPEEMNSLQAVGVM---HGVTLLRPLLSSSKQEI 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 ++ +R IS+ D +N +D R R+R V I + AL +F + N V Sbjct: 175 LAYDKERGISFIVDSTNKEDDTMRNRMRHHVVPILKKENPALIQNALRFSHKMSDLTNVV 234 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 I + T+ I S+ + L + + + +++ Sbjct: 235 DEKINEIGTIEN-----FLGQAYRIKSSEIKRLTKDQQIVFW------------QKIIWQ 277 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDS 350 K +R ++G + F+++ + + + E +++ R D+ Sbjct: 278 KFHRRVNKNLGNFSVIEYQGFVYLYKNNLEISKKIFTIKINEPFIFNNRKLLLTTKDN 335 >gi|262393537|ref|YP_003285391.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25] gi|262337131|gb|ACY50926.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25] Length = 436 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 18/322 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +++A SGG DS LL L S I+ A+ V H L A D Sbjct: 14 RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKC 70 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ I+ S+ + + AREARY ++++ + +++T DDQL Sbjct: 71 LLWAKQVGISCSIELVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQL 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M +++ + + RP L +R+ I + + W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSSG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R V +++ +++ L + + L+ +++ Sbjct: 186 SNQDTRYDRNFLRHCVIPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245 Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 +++S + L S L L+R+ A S+P + + + + + Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303 Query: 306 RVVIDRRANFLWITRAVRNLPT 327 + + R N L+ + ++ Sbjct: 304 QGEVRRFRNRLYWVTEIADVTE 325 >gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42] Length = 462 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 25/320 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + I++ +SGG DS+ LL L+ + D I+ A ++H +R A+ + YVS Sbjct: 16 IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C + I V S K L AR+ RY + E I A I H +D Sbjct: 73 KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV MR R KG+ I Y + I RP L R +I + N++ Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRI 186 Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D +N ++ + R ++R + + ++ + + + Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246 Query: 243 TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300 + + + I+ D + + + +LR S G + R +E +M + K Sbjct: 247 NIKEKGFVEINLDNFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306 Query: 301 CVSIGRVV-IDRRANFLWIT 319 +++ R + + R+ + + +T Sbjct: 307 MLTLPRNIFVYRKKDCIILT 326 >gi|134298004|ref|YP_001111500.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1] gi|134050704|gb|ABO48675.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1] Length = 472 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 61/301 (20%), Positives = 118/301 (39%), Gaps = 21/301 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + +LV VSGG DS+ LL L+ + + I ++H R E A ++ + Sbjct: 15 RMVKKGQLVLVGVSGGLDSVVLLHILNCLKEELG---ISLHVAHLNHMFRGEEATEDALF 71 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V ++CS I +V V AARE RY + + I AH Sbjct: 72 VQELCSNWGIPCTVEKRNVPAYAQARGLSSELAAREVRYQFYDDVREETGGHKIALAHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +DQ E+V M R GL G+ NL+I RP L+ R +I + ++ +++ Sbjct: 132 NDQAESVLMNMLRGS-----GLKGISGIAPVRDNLYI-RPLLKLLRSEIEQYGQRKGLTF 185 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIP---KY 241 D SN + + R ++R + + L + + + + + + L + Sbjct: 186 RIDSSNLEVVYRRNKLRHQLIPLLEKEYSPGLITILSRMSEQLREEDEYMEELARRGYQK 245 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + + + ++N LL ++R++ + +E ++ + Sbjct: 246 VLLMTDGPVLDRKSLMNQPLVLLRRIMRIAYQEVKSTKQGITFAHVENLISHIMRDGPER 305 Query: 302 V 302 + Sbjct: 306 I 306 >gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 134/335 (40%), Gaps = 26/335 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S +++++ + + I+V VSGG DS+ L+ L ++ + V+H Sbjct: 1 MIESAVKTIKEY-NMIDKGDSIVVGVSGGPDSICLINLLSEFKEK---YNLRLYVVHVNH 56 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 LR A ++ +V VC + I + K AA RE RY E + Sbjct: 57 MLRGIDADNDASFVEGVCRGMGIPFFLFKEDVKKYALEKGLSEEAAGREVRYKAFHEIFE 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +NA I AH +D ET+ + R G+ + +N I RP +R R+ Sbjct: 117 KVNADKIAVAHNKNDVAETILLNILRGAGTAGL-------IGIKPVNGNIIRPLIRTTRD 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +L +NI + D +N +D + R R+R + + LY + D Sbjct: 170 EILDYLKSKNIKFVVDATNKEDVYRRNRIRLKLIPFIEENFGIDIVENLYRTSQIILDDE 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 +N + K + S++ +I + +L L+R++ G + Y+ + Sbjct: 230 DYLNEECEKIFKKISIFNEESVMLDIDEIKKLHDSLKKRLIRMAYKAIRGDTNELTYKHV 289 Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITR 320 E + + ++ + + VI N ++ R Sbjct: 290 EDALKLIDKQTSSKIDLPFEIEVIKSYNNLIFRKR 324 >gi|156975489|ref|YP_001446396.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116] gi|171769914|sp|A7MXZ8|TILS_VIBHB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|156527083|gb|ABU72169.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116] Length = 448 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 22/329 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66 R I++A SGG DS LL L S K A+ V H L A Sbjct: 14 RYYQSGTKIVLAFSGGVDSRLLLELLSRYQKAYSVDNQSTDSHSFKCHAVYVHHGLSSNA 73 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + I SV ++ + AREARY +++H ++ L++T Sbjct: 74 DEWAGKCLVWAEQAGITCSVERVSLDTNSGESIELLAREARYQALAKHIQS--GDLLLTG 131 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ+ET + +R KG LS M +++ + + RP L +RE I + ++ Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFA-GGTLVRPLLAIKREQIEAVAKEQG 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W ED SN D R++R +R + +++ +++ L + + L+ Sbjct: 189 LDWVEDESNQDTRYDRNFLRHRIMPELSERWPSIHQAVQRSASLCAQQEALLDELLLAVF 248 Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 ++S ++S + L S L L+R+ A ++P + + + Sbjct: 249 ERALQSDFSLSIEELATHSELARARLVRMWLAKL--NANMPTQVQLNLIWNEVALAQQDA 306 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327 + + + + R N L+ ++ T Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETVDVTT 335 >gi|222056506|ref|YP_002538868.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32] gi|221565795|gb|ACM21767.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 124/328 (37%), Gaps = 28/328 (8%) Query: 8 SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 V ++R+ L+ P ++VAVSGG+DS+ LL L + S K++ ++HCLR Sbjct: 4 KVNSYIRAHRLISPGDTVIVAVSGGADSVALLDVLAGLRS----SKLRLIVAHLNHCLRG 59 Query: 65 -TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINA 119 + + +V + + + + + L A R ARY + E A NA Sbjct: 60 SESDADEAFVRKLAGGYGVCFVTKAVDVLALSRESKMSLEEAGRVARYRFLKELAINCNA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + AH DDQ ETV MR R G GL M T I RP L R +I S Sbjct: 120 RSVAVAHHADDQAETVLMRLIRGAG--GSGLRAMTSTTA----GLIIRPLLSVTRREIES 173 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNN 232 +L ++ + + D SN D F R R+R + L + + Sbjct: 174 YLDKKGLGYRTDSSNADLNFLRNRIRHELIPFLRGYNPAITERLATTAVALSEDEKILEA 233 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-M 291 A + V + + + R + G +S + V + Sbjct: 234 VTATAFANHALVGSGEVSISVAGADMEPRGIRIRMYRQALQQLKGDLSTISAVHLNDVDL 293 Query: 292 LFLKSGKRGCVSIGR--VVIDRRANFLW 317 L L G V++ R V+ R ++ Sbjct: 294 LLLSRKPSGKVNLSRGITVMRRYEKLVF 321 >gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7] gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7] Length = 486 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 27/334 (8%) Query: 4 SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++SV F ++ I+ VSGG DSM LL L+ S A VDH Sbjct: 13 DIVKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGKSSV----IIAAHVDH 68 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 R +++++++V C I V K + AAAR+ RY + Sbjct: 69 QFRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMA 128 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A + AH DDQ+ET+ MR + G GL+GM + L + RPFL ++ Sbjct: 129 KHQAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASGL-LIRPFLYAAKD 185 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRV 228 +I + Q +S+ D SNT D + R R R+ V D+H ++ K+ + + Sbjct: 186 EILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQ 245 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRS 286 + + + K +T + + + S +L + L +++ + S R Sbjct: 246 YLQSLTKERMNKVITSKSDTSVEVSSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARH 305 Query: 287 MERVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317 +++ + + ++G G V+ L+ Sbjct: 306 IQQFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 339 >gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017] gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017] Length = 648 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHHLRENAANEQNVVEAFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + Q G+ AR RY + + AH DDQ+E Sbjct: 77 ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + + N + L + + Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279 >gi|255692690|ref|ZP_05416365.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565] gi|260621576|gb|EEX44447.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565] Length = 426 Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats. Identities = 65/304 (21%), Positives = 116/304 (38%), Gaps = 35/304 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79 ILVA+SGG+DS+ LL LH+ + A + LR E + + ++V +C + Sbjct: 21 KILVALSGGADSVALLCILHT-------AGYRCEAAHCNFHLRGEESNRDEQFVRQLCEK 73 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +I + + ++ + ARE RY + K A +I AH DD +ET+ Sbjct: 74 YKINLHTIDFDTTRYATEKHISIEMGARELRYNWFEKTRKDCQADVIAVAHHQDDSVETI 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ + N + RP L RE+I +L + D +N Sbjct: 134 LLNLIRGTGITGL-------LGIRPRNGVVVRPLLCINREEIIHYLQSIQQEYVTDSTNL 186 Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +D + R ++R + + + L D+ N + K +T Sbjct: 187 EDEYTRNKIRLNLLPLMQTINPSVKNNLIETSNYLNDVATLYNKYIEETKTKIITEEGIR 246 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 I ++ ++ +LF +L + L + GK+ C R++ Sbjct: 247 ISSLLKEP--APEAILFEVLHPLGFNSTQIKDIASS-------LHSQPGKQFCCKEWRII 297 Query: 309 IDRR 312 DR Sbjct: 298 KDRE 301 >gi|91223490|ref|ZP_01258755.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01] gi|91191576|gb|EAS77840.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01] Length = 436 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 130/322 (40%), Gaps = 18/322 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +++A SGG DS LL L S ++ A+ V H L A + Sbjct: 14 RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKC 70 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ I+ S+ + + AREARY ++++ + +++T DDQ+ Sbjct: 71 LLWAQQVGISCSIERVSLDINNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQI 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M +++ + + RP L +R+ I + + W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSCG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R V +++ +++ L + + L+ +++ Sbjct: 186 SNQDTRYDRNFLRHCVVPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245 Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 +++S + L S L L+R+ A S+P + + + + + Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303 Query: 306 RVVIDRRANFLWITRAVRNLPT 327 + + R N L+ ++ Sbjct: 304 QGEVRRFRNRLYWVTETADVTK 325 >gi|149174369|ref|ZP_01852996.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797] gi|148846914|gb|EDL61250.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797] Length = 354 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 19/314 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 L+AVSGG+DSM LL AL + S+ ++H LR + ++ ++ C R Sbjct: 41 LIAVSGGADSMALLRALKCLAQSSESLIPPDGLVIAHLNHGLRGTASDEDAEWLKQECRR 100 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + + N P +GL R ARY ++ A T I AHT DDQ ETV Sbjct: 101 LSLPCVTEKQELNQGPDSGLEEQCRTARYGFLTRVAIAEQCTQIAVAHTLDDQAETVLHH 160 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R GL G+ T + L + RP L+ RE++ FL + D SN D Sbjct: 161 IIRGTGI--TGLRGIPQTRVLQQGLHLIRPLLQISREEVVEFLNVCGQEYRNDESNADTS 218 Query: 199 FERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 F R R+R + + + ++ ++ +++ +N V ++ + Sbjct: 219 FTRNRIRHQLLPLLKKEFNPNVVQSIQRLSQQAEEVTCVLNAEVDQILKAATLDQNQETW 278 Query: 251 AISQDILNIDSTLLFY--LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + +L L L++ + + + G+ +R+ SG++ +S+ V Sbjct: 279 RLDCLVLQDSPDYLVRQCFLKIWQKMNWSRRRM-GFDHWQRLQELTLSGQK--LSLPDQV 335 Query: 309 IDRRANFLWITRAV 322 R + L I R Sbjct: 336 EAERRDKLLILRKR 349 >gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 463 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 84/353 (23%), Positives = 140/353 (39%), Gaps = 37/353 (10%) Query: 1 MFL--SPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 MF + + VR F+ +L+ P ++V VSGG DS+ LL LH + + F A Sbjct: 1 MFRGGAVLRKVRQFIMQHNLISPGELVVVGVSGGPDSVALLHLLHLLGKEEGF---SIHA 57 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALIS 111 ++H LR A++E +V ++ L + +V V + + + A R+ARYA Sbjct: 58 AHLNHGLRPEAEEEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFI 117 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ + A + TAH DQ ETV M R KG+G + RPFL Sbjct: 118 RVAEELKADKVATAHHMGDQAETVLMHLLRGSGLKGLGGMS-------PRRGILIRPFLT 170 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R DI S+L + + +C D SN D + R R+R + + + V Sbjct: 171 VTRTDIMSYLEENRLDYCLDASNYDWDYLRNRIRHQLIPLLEKEYNPNIVASLCQLATVA 230 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL--------NIDSTLLFYLLRVSAAICGGQI--SL 281 M++ + + I Q L + + ++ ++ GG+ + Sbjct: 231 RDEDMVLEEMAVKAFKEIARPDQGGLVLNLETMQVLPVAVQRRVILLALKQLGGEQGWEM 290 Query: 282 PGYRSMERVMLFLKSGKRGCV--------SIGRVVIDRRANFLWITRAVRNLP 326 +S+ + S K CV S GR+++ R +P Sbjct: 291 KDVQSVLELAQKAGSDKHICVGKNIWANKSYGRIIVRVGREKTRPFRYFLEIP 343 >gi|109897591|ref|YP_660846.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c] gi|109699872|gb|ABG39792.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c] Length = 464 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 25/334 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F V RS P H++VA S G DS LL AL + + + SA+ + H Sbjct: 3 LFDHLAAQVSALKRSHPSPLHLVVAYSAGIDSHVLLHALWQL-TQADISSFQLSALYIHH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 L + A ++ + VCS L + HS + + G+ A AR+ARYA + E A Sbjct: 62 GLSDNADKWQQHCATVCSELEVEFHSAKVFVDVASGNGIEAQARDARYAKLVEVA--PPG 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRRE 175 +++ A +DQLETV ++ +R KG+ G + RP L + Sbjct: 120 SVVALAQHQNDQLETVLLQLKRGAGPKGLSGMGRLFSRAKPSTPQEQVHFFRPLLEISQA 179 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 I + + + W ED SN + FER +RR + + L+ + F + A Sbjct: 180 QIHRYADEHALVWQEDESNQNVDFERNFIRRDINPL----LHQRWPHFAQSVSRSAQLCA 235 Query: 236 MLIPKYLTVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGY--- 284 V ++++ + +L + ++R+ I P Sbjct: 236 QQQALLDEVTQEKLLSLRNPNNTLSIELLLALTEPWRLQVVRMWLDT--QSILSPSQAIL 293 Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 + R +L + + R N L++ Sbjct: 294 AQLSRELLLAAQDASPVIQWQKWQFRRFENALYV 327 >gi|254520535|ref|ZP_05132591.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA] gi|226914284|gb|EEH99485.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA] Length = 469 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 25/343 (7%) Query: 3 LSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ I V+ F+ +L+ +LVA+SGG DS+ LL L+ + R I A V+ Sbjct: 4 INVINKVKDFIIKNNLIQEGDRVLVALSGGPDSVCLLHILYKL---RESLNIDIGAAHVN 60 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 H LR + A ++ Y ++C I + + A RE RY Sbjct: 61 HMLRGQDALNDEEYAKEICKEFNIEFYPIRIDIDKIAKEKGISHEMAGREERYKFFDFIK 120 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 T N + I AH +DQ ETV M R +G L G+ + I RP L R Sbjct: 121 NTQNYSKIAVAHNSNDQAETVVMNMMRGAGIEG--LCGIRSKR----DGGIIRPILCLSR 174 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ED+ ++ + N++ D +N ++ + R +VR + + + + + Sbjct: 175 EDVENYCKENNLNPRIDKTNLENIYSRNKVRLDILPYMKENFNKDIIETLNRMTNLLQID 234 Query: 235 AMLIPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I K + S I IS++ ++ ++ +++ S G+ + + + Sbjct: 235 NDFIEKQCNNSYKKYCSNKNSHIVISKEAFLLEKAIITRIIKKSFVEFTGKYNNFEMKHI 294 Query: 288 ERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLI 329 V+ K+ V + +V + +++ N + Sbjct: 295 YEVIEIAKNSTNKKVDLPNGIVAENIYGDIYLKNKEYNNKEYV 337 >gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01] gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01] gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-03] gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-07] gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-22] gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-26] gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-32] gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO 3283-12] Length = 435 Score = 216 bits (550), Expect = 7e-54, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 30/385 (7%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 FF YP I +AVSGG DS+ L SF + A+ VDH LR + E Sbjct: 37 FFPDQSDYP-PIAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGQEA 88 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + I ++ + K + + AREARYA + + T ++ H DD Sbjct: 89 QQTIARLRAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV+MR +G+ G ++ + RP L R +R+ L Q ++ W + Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWITVRP---DIRLIRPLLGFSRTALRNTLRQAHLEWVD 205 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 DPSN D R ERVR+R +++ D A + K+ + LR++ A+ + +++ + Sbjct: 206 DPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLAQHVVMCPEGW 265 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 +A+ ++ ++D +L GG P ++ R+ ++ + Sbjct: 266 VALGPELPDVD------VLAALIRSIGGAAYPPAQSAVVRLKDMATEA-----TLAGTRL 314 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQSYRKADVPS 366 R A + R + E TVWD R+ ++S + + Y + Sbjct: 315 IRHAQKWMLMREAAAM-APAQQAENGTVWDNRFVLCLPASVSKVGLMVAAAGYG---LAR 370 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391 + R + +P+ +A Sbjct: 371 KMRNGQQARFCAVLPALWRAGKRVA 395 >gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens] gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens] Length = 462 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 152/380 (40%), Gaps = 47/380 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE V + L + +AVSGG DS+ L + K AI+VDH LR Sbjct: 3 KFIEVVERY--GLTPSTPVALAVSGGVDSISLCVLARQYFQ-------KLFAITVDHRLR 53 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + E + V+++ +L I H +VS W + AR RY L+ E + N Sbjct: 54 AESSQEAQNVNEILDKLNIPHKIVSCNWNQEVNFRKVQELARLKRYRLLGEECQNQNIQY 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSF 180 ++T H +DQ+ET R G+ + L+ + + RP L ++ ++ Sbjct: 114 LLTGHHLNDQIETFIFRLSCKSGIDGLSCMKLSQNLRLHFPPITLIRPLLSFQKTQLQEV 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHAL-YLKMKKFQDLRVKVNN 232 Q + W EDPSN ++R ++R+ + ++I L L ++ F++ +N Sbjct: 174 CHQNKVIWIEDPSNMSLMYKRNQIRQGLAALQNSSKNISLTTLVASSIESFKETGSILNR 233 Query: 233 AVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS---- 286 V I ++ I A + ++LN ++ ++ L GGQ P S Sbjct: 234 RVINHIQGSCEINHDWIFATAHLNNLLNEENYIVRRSLSRLCQYIGGQTYPPLLESVIKL 293 Query: 287 ---MERVMLF-LKSGKRGCV--SIGRVVIDRRANF---------------LWITRAVRNL 325 ++R++ + + + C SI V+ + + I+R + + Sbjct: 294 HMELKRILTMDIANDNKECYVKSIAGCVVFCINDTKRKYFTKSKNASTIVIIISRQPQKI 353 Query: 326 PTLILYPEETTVWDGRYQFQ 345 + ++ WD R+ Sbjct: 354 SMIPIFDGVNLWWDNRFLIN 373 >gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208] gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3] Length = 472 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 27/332 (8%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++SV F ++ I+ VSGG DSM LL L+ S A VDH Sbjct: 1 MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGKSSV----IIAAHVDHQF 56 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R +++++++V C I V K + AAAR+ RY + Sbjct: 57 RGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAKH 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + AH DDQ+ET+ MR + G GL+GM + L + RPFL +++I Sbjct: 117 QAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASGL-LIRPFLYAAKDEI 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKV 230 + Q +S+ D SNT D + R R R+ V D+H ++ K+ + + + Sbjct: 174 LEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 233 Query: 231 NNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSME 288 + + K +T + + + S +L + L +++ + S R ++ Sbjct: 234 QSLTKERMNKVITSKSDTSVEVSSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARHIQ 293 Query: 289 RVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317 + + + ++G G V+ L+ Sbjct: 294 QFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 325 >gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681] gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681] Length = 482 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 116/324 (35%), Gaps = 22/324 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 SL P I+VAVSGG DS+ LL LH + ++ V H R E + E Sbjct: 20 HSLWSPGDRIVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAE 77 Query: 72 YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V ++ +L + + + G AARE RY + + A A I AH Sbjct: 78 EVRNIARKLELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMAHH 137 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R G+ + + N+ + RP LR + D+ F N+S Sbjct: 138 GDDQAETVLLHLLRGSGPAGLAGMRLAR---REKNVQLIRPLLRMYKADLIEFCNFYNLS 194 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAM----LIPK 240 + D +N ++ R +R V L + + + N+ + K Sbjct: 195 YVTDSTNLSSKYRRNAIRMDVLPFLGQYNERLTPSLNRLAETMADENDFMEASTLSAYEK 254 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + + + L L+++ +R +E V L L Sbjct: 255 MVRLDNGRYMFPIASYRKLSVALQRRLIKLILNYLPSDSENFDFRKIETVRLRLLQEASS 314 Query: 301 CVSI---GRVV-IDRRANFLWITR 320 S+ G V + + R Sbjct: 315 TWSLDLGGGAVGVREYDQAVLFDR 338 >gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes serotype 4b str. F2365] gi|61216556|sp|Q724J4|TILS_LISMF RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase; Includes: RecName: Full=Hypoxanthine-guanine phosphoribosyltransferase; Short=HGPRT; Short=HGPRTase gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase, fusion [Listeria monocytogenes serotype 4b str. F2365] Length = 648 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHHLRENAANEQNVVETFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + Q G+ AR RY + + AH DDQ+E Sbjct: 77 ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + + N + L + + Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279 >gi|28377429|ref|NP_784321.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1] gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|61216640|sp|Q88Z33|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28270261|emb|CAD63162.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1] gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 448 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 29/308 (9%) Query: 3 LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++PI+ + L+ P ++VAVS G DSM LL L + + + + V+ Sbjct: 1 MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118 H LRE ++ E Y+ C + + + W + P++G+ AA R+ RY + ++ + Sbjct: 58 HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT ++TAH +DQ+ET M+ R L+G+ + + + RP L ++ +R Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234 ++ ++++ + ED +N D R R+R V + +K D + ++ + Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLTAKK 234 Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 A+++ ++ + + +A+ L + LF ++ + GQ Sbjct: 235 QMVTVLLSQVVTATGALVVDQWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQR 294 Query: 280 SLPGYRSM 287 + P + Sbjct: 295 TRPATSRL 302 >gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum ST-III] Length = 448 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 29/308 (9%) Query: 3 LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++PI+ + L+ P ++VAVS G DSM LL L + + + + V+ Sbjct: 1 MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118 H LRE ++ E Y+ C + + + W + P++G+ AA R+ RY + ++ + Sbjct: 58 HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT ++TAH +DQ+ET M+ R L+G+ + + + RP L ++ +R Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234 ++ ++++ + ED +N D R R+R V + +K D + ++ + Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLMAKK 234 Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 A+++ ++ + + +A+ L + LF ++ + GQ Sbjct: 235 QMVTVLLSQVVTATGALVVDQWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQR 294 Query: 280 SLPGYRSM 287 + P + Sbjct: 295 TRPATSRL 302 >gi|167759635|ref|ZP_02431762.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704] gi|167662761|gb|EDS06891.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704] Length = 449 Score = 215 bits (549), Expect = 8e-54, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 134/340 (39%), Gaps = 31/340 (9%) Query: 8 SVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 V+ ++ L ++V VSGG+DS+ LL L + + + A+ V H LRE Sbjct: 4 KVKAYIEKYHMLDEKDKVIVGVSGGADSICLLFMLIQLKKEMG---LSVEAVHVHHGLRE 60 Query: 65 -TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 TA + YV VC L I + V + A R R + E + Sbjct: 61 KTADADAVYVKKVCKELGIGLRLYYEDVKSFALHNKMSEEEAGRYVRRRIFKEVLQEAGG 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I AH +D ET+ R + KGMG + ++ RP L +RE+I S Sbjct: 121 TKIALAHHQNDNAETLLWNLCRGCSLKGMG-------GIAPVDGVFIRPLLCLKREEIES 173 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQDLRVKVN 231 +L+ R IS+C D +N +D R R+R V + + + M++ + L V Sbjct: 174 YLVNRGISYCTDETNLEDGHTRNRIRNHVIPYLEEQVNERAVSHMSETMEQMRQLWKYVE 233 Query: 232 NAVAMLIPKYLTVHMRS--IIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYR-SM 287 + + + V + + + + + L Y+L GG+ + M Sbjct: 234 SETTRYAARCIKVSKDQTRRVLLKAEFILVPEALRSYVLHECICQAAGGRKDIESVHTKM 293 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327 +L + G++ + G V + R + + R P Sbjct: 294 LSELLDNQVGRQARLPYGIVAVRRYE-GIELRREGDGRPK 332 >gi|227903173|ref|ZP_04020978.1| cell cycle [Lactobacillus acidophilus ATCC 4796] gi|227868978|gb|EEJ76399.1| cell cycle [Lactobacillus acidophilus ATCC 4796] Length = 418 Score = 215 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 29/340 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA SGG DSM LL L + + F + A +H LR +++E R + D Sbjct: 14 LENKKLLVAASGGPDSMALLDMLKDLQKKQKF---ELIAAHFNHQLRSDSEEETRILKDY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I V W KN +P++G+ AAARE RY +++ AK A ++TAH DD +E + Sbjct: 71 CQKNEIPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M + + + RP L +++I ++ +R IS+ D +N Sbjct: 131 LLKFIRSGNPEEMNSLQAVGVM---HGVTLLRPLLSSSKQEILAYDKERGISFIVDSTNK 187 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +D R R+R V I + AL +F + N V I + T+ Sbjct: 188 EDDTMRNRMRHHVVPILKKENPALIQNALRFSHKMSDLTNVVDEKINEIGTIEN-----F 242 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 I S+ + L + + + +++ K +R ++G + Sbjct: 243 LGQAYRIKSSEIKRLTKDQQIVFW------------QKIIWQKFHRRVNKNLGNFSVIEY 290 Query: 313 ANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDS 350 F+++ + + + E +++ R D+ Sbjct: 291 QGFVYLYKNNLEISKKIFTIKINEPFIFNNRKLLLTTKDN 330 >gi|148264776|ref|YP_001231482.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4] gi|146398276|gb|ABQ26909.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4] Length = 459 Score = 215 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 27/328 (8%) Query: 6 IESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ V F+ L P ++VAVSGG+DS+ LL L S R ++ + ++HCL Sbjct: 2 LKKVAGFIEEHDLFSPGDTVVVAVSGGADSVALLDVLAGFSSLR----LRLIVVHLNHCL 57 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI 117 R + + +V ++ + + + + + L A R ARY SE A + Sbjct: 58 RGAESDADEAFVRELAGKYGVTFVTQAVDVQDLSKREKLSLEEAGRAARYRFFSEIAASC 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++ AH DDQ ETV MR R G GL M RP L R +I Sbjct: 118 KARAVVLAHHADDQAETVLMRLLRGAG--GSGLCAMAAKSA----GMYVRPLLSVTRFEI 171 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230 ++L +R + + D SN D F R RVR + L + + Sbjct: 172 EAYLRERGLVFRTDSSNADVNFLRNRVRHELIPFLKSYNPAITDRLVTTAAALSEDEEIL 231 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + ++ TV + + I L L R + G ++ R + + Sbjct: 232 DKVTTEAFNRFGTVEAGRVKFVVAGIATELRGLRLRLYRRAVLQVKGDLTQISARHLNDI 291 Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFL 316 +L S V + R L Sbjct: 292 DSLLLSASPNSRLVLPEGFTVKRCYGEL 319 >gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno] gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno] Length = 415 Score = 215 bits (549), Expect = 9e-54, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 120/326 (36%), Gaps = 31/326 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73 + + ILVA+SGG DS+ L LH F + + LR E + + +V Sbjct: 5 NQLKNKKILVAISGGIDSVVLTHLLH-------FHGTELLLAHCNFQLRGEESDGDEAFV 57 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L I V + Q AARE RY E +T + + TAH + Sbjct: 58 RNFAKTLGIPLEVKRFDTKEYAKAHQLNTQLAARELRYEWFYELLETHHCDALATAHHAN 117 Query: 130 DQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D LET + R G +G+ D I RP L+ R+ I + + W Sbjct: 118 DNLETFLINLSRGSGLDGLLGIPQQTDK--------IVRPLLQWSRQQIYDYAEAHELQW 169 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ED SN +++ R +R + ++ F + ++ + + Sbjct: 170 REDSSNASNKYVRNVIRHEIIPQMALVHPNYLENFNQTQEYLHQSARFIDFYIEEWRKSC 229 Query: 249 I-----IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 I ++ + L + L ++ G + + ++ ++ ++GK+ + Sbjct: 230 FEGTQPIFVNTEKLQTAPEIDLVLHKLFYPYGFGNV-----KDLKNLLFNAEAGKQLLSA 284 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLI 329 +V D + +L A PTL Sbjct: 285 THSLVKDSKGAWLKELTAESLPPTLT 310 >gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM 16795] gi|164604367|gb|EDQ97832.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM 16795] Length = 462 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 25/314 (7%) Query: 2 FLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 F ++++ +L+ I++ +SGG DS+ LL L+ + I+ A ++H Sbjct: 3 FEKVLDTINR--HNLIEKGDKIVLGISGGPDSVCLLHILNRLKEQ---FDIEIYAAHLNH 57 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 +R A+ + YV+ +C + I + V S K + + AR+ RY + E + Sbjct: 58 QIRGIEAQKDALYVTRLCEEMGIKYFVRSIDVPKYCQENKLSIEDGARKLRYEMFFEIMQ 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A I AH +DQ ET+ MR R G+ I Y + I RP L R Sbjct: 118 RTHANKIAIAHNVNDQAETILMRIMRGTGLHGL------RGIEYIRDNVIIRPILDIERS 171 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I S+ Q N++ D +N D + R ++R + + K + Sbjct: 172 EIESYCEQYNLNPRIDQTNLDPIYTRNKIRLKLLPYMQENFNSNVTKAIVRMSSSIKEDS 231 Query: 236 MLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I + I IS D +++ +++ + +LR + G + + + Sbjct: 232 DYIESNALMKFEEICLISDDSIDIPIDLFVDLHNSIKYRVLRYAIKYVLGDTNFIDQKHI 291 Query: 288 ERVMLFLKSGKRGC 301 ++ K G Sbjct: 292 LEIVELEPENKVGK 305 >gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3] gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3] Length = 480 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 15/247 (6%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 +++ P +LV VSGG DS+ LL AL + + + + S V H LR A + Sbjct: 24 HAMIAPGEAVLVGVSGGPDSVALLHALVRLQPELAVA--RVSVAHVHHGLRGAEADADQA 81 Query: 72 YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V+ + RL + + + AAR ARY S+ A I TAH Sbjct: 82 FVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYHKIATAHH 141 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D E V M R +G+ + + + I RP + REDI +FL + Sbjct: 142 AGDNAEWVLMNLVRGAGPEGL-------SGIPPVRENIIRPLIHVSREDILAFLTHGGMD 194 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + ED +N D F R RVR + + + + ++ ++ I ++ Sbjct: 195 YVEDSTNADLTFTRNRVRHHLLPLIEEHYNPGIAACLNRVAEIFREESLWIRDMVSGLFE 254 Query: 248 SIIAISQ 254 + + + Sbjct: 255 QAVLLCE 261 >gi|269966268|ref|ZP_06180357.1| cell cycle protein MesJ [Vibrio alginolyticus 40B] gi|269829183|gb|EEZ83428.1| cell cycle protein MesJ [Vibrio alginolyticus 40B] Length = 436 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 131/322 (40%), Gaps = 18/322 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +++A SGG DS LL L S ++ A+ V H L A + Sbjct: 14 RYYQLGTKVVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKC 70 Query: 74 SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ I+ S+ + + AREARY ++++ + +++T DDQ+ Sbjct: 71 LLWAQQVGISCSIERVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQI 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +R KG LS M +++ + + RP L +R+ I + + W ED Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSCG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185 Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 SN D R++R +R V +++ +++ L + + L+ +++ Sbjct: 186 SNQDTRYDRNFLRHCVVPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245 Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305 +++S + L S L L+R+ A S+P + + + + + Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303 Query: 306 RVVIDRRANFLWITRAVRNLPT 327 + + R N L+ + ++ Sbjct: 304 QGEVRRFRNRLYWVTEIADVTE 325 >gi|170288158|ref|YP_001738396.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2] gi|226695551|sp|B1L8R5|TILS_THESQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|170175661|gb|ACB08713.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2] Length = 414 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 17/278 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V Sbjct: 2 LEEGEHVLVAVSGGIDSMTLLYVLRKFSP---LLKIKITAAHLDHRIRESSRRDREFVER 58 Query: 76 VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +C + I L ARE RY + AK + A+ I AH +D Sbjct: 59 ICRQWNIPVETSEVDVPSLWKDSGKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LETV R R G+ + RPFL +R +I + ++ + + D Sbjct: 119 LETVVHRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVD 171 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D ++ R +R + + + L ++ V V + + + + + + + Sbjct: 172 ETNYDVKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTHLLRNFVERTVQDFVERNVY 230 Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSM 287 +D + ++ LF L V+ + +P Y + Sbjct: 231 FYKDYAVFVEPEDLFLFLEVTRWVLKEMYGRVPEYEKL 268 >gi|116871602|ref|YP_848383.1| hypothetical protein lwe0182 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740480|emb|CAK19600.1| conserved hypothetical/hypoxanthine phosphoribosyltransferase, fusion protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 648 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS LL L S + K S ++HCLRE A+ E V C Sbjct: 20 SDDKLLVAVSGGPDSFALLHFL---WSSKLVPKESISVAHLNHCLREGAEKEQLVVQTFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I V + K Q G+ AR RY + + ++ AH DDQ+E Sbjct: 77 EEHHIPFFVEAVDIKKHAETIQKGIEETARIVRYKFFEKVMTENDINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R + +G SG+ I RPFL + +I + + ++ + D S Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKRKVTKGYAI-RPFLPITKAEIIQYASKHDLPYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 N + R R R + + A+Y +F + + + ++ K L + Sbjct: 194 NVSQEYTRNRYRTQLLPFLSKENPAVYDHFNRFSEETSEDFLFLEELANDVLKKNLIQNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + N + L + + Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279 >gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1] gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1] Length = 448 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 135/308 (43%), Gaps = 29/308 (9%) Query: 3 LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++PI+ + L+ P ++VAVS G DSM LL L + + + + V+ Sbjct: 1 MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118 H LRE ++ E Y+ C + + + W + P++G+ AA R+ RY + ++ + Sbjct: 58 HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT ++TAH +DQ+ET M+ R L+G+ + + + RP L ++ +R Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234 ++ ++++ + ED +N D R R+R V + +K D + ++ + Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLTAKK 234 Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 A+++ ++ + + +A+ L LF ++ + GQ Sbjct: 235 QMVTVLLSQVVTTTGALVVDQWGALPSQWQLAVFATWLEQQMQQLFTESKLQPLVSWGQR 294 Query: 280 SLPGYRSM 287 + P + Sbjct: 295 TRPATSRL 302 >gi|291166567|gb|EFE28613.1| tRNA(Ile)-lysidine synthase [Filifactor alocis ATCC 35896] Length = 466 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 26/333 (7%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E++R +L+ P ++VA SGG DS+ LL LH + ++ IK A ++H + Sbjct: 6 KVLETIRQ--NNLIQPKEKVIVAFSGGPDSVCLLHLLHELKAEL---DIKLYAFHLNHQI 60 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R A + Y +C I V V + L AAR+ RY + + Sbjct: 61 RGLDAHRDAWYCLSLCDEYDIPFFVDSTDVPGYAQNMKMSLEEAARDVRYKKLFYLKSIL 120 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA I AH DDQ+ETV MR R G GL G+ N I RP L ++++I Sbjct: 121 NADKIAVAHNMDDQVETVLMRMMR-----GTGLYGLKGMEQLLSNG-IIRPLLSVQKKEI 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV------- 230 L Q I W D +N +D + R ++R + + + + + Sbjct: 175 IEELEQNGIHWQVDTTNQEDNYTRNKIRLSMILLMEECYPTAKENIFRMSASIREDSQYI 234 Query: 231 -NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 NA++ + ++ ++ D ++D + +R S + + ++ Sbjct: 235 EQNAMSFFEENHTLINSNTVKLELDDFFDMDLAIQKRSVRYSINVVLHSLKGIETVHLDS 294 Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITRA 321 V+ K +++ + + ++ + L+ + Sbjct: 295 VIQLAKRYGDAQINLPKNLTVYKKQSALYFSTE 327 >gi|310816574|ref|YP_003964538.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25] gi|308755309|gb|ADO43238.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25] Length = 407 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 153/396 (38%), Gaps = 22/396 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + P R FV + I VAVSGGSDS L ++L + A +VDH Sbjct: 4 LSKDPRAIARAFVTQVT--GRIGVAVSGGSDS------LAALLLLHEAAPGRIWAATVDH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V C+ IAH + W+ + L AR ARY+L+S A+ Sbjct: 56 NLRADSAAEAEMVQRFCAARDIAHYTLPWQPADMAGNLPHRARIARYSLLSTWAREAFLA 115 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH +DQ ET M R G+ + RPF+ R+ +R Sbjct: 116 GVVIAHNREDQAETYLMNLGRSAGIDGLSAM---RDRWRVEGVPFYRPFMALSRKALRDV 172 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVA 235 L ISW +DP+N D ++RVR+RR + + + + ++ A+ Sbjct: 173 LRAGAISWVDDPTNDDPHYQRVRLRRLLPQLAEAGIETTDITRAALHLSQVSEALDWALT 232 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + T I+ ++ + + + LL + GG P + + L Sbjct: 233 AAVGDPTT-PAGEIVLPVAQYRSLPTAMRYRLLLRALDWIGGPAYPPRGPELTGLDQALF 291 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 R ++G + A L ITR V + ++DGR+Q IG Sbjct: 292 GASRR--TLGGCLFTSGARHLRITREVAA---VGAAVPAGVLFDGRWQLAGQLPQGALIG 346 Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 A+ P ++ +L + P+ + L+A Sbjct: 347 RLGGAIAEFPDWRASGYSRASLMAGPAIWQAQRLIA 382 >gi|329962376|ref|ZP_08300380.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057] gi|328530099|gb|EGF56984.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057] Length = 423 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 117/315 (37%), Gaps = 43/315 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R ILVA+SGG+DS+ LL L S A + LR + + + Sbjct: 14 RLFSPEEKILVALSGGADSVALLHLLLS-------AGYTCEAAHCNFHLRDAESDRDEAF 66 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V ++C+ + V + + + AARE RYA E K A +I AH Sbjct: 67 VRNLCNARHVPLHTVHFDTKREAEERHISIEMAARELRYAWFEEIRKKCGAGVIAVAHHQ 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET + R G+ + N + RP L R++I S+L ++ Sbjct: 127 DDSVETFLLNLIRGTGINGL-------RGIRPKNGKVVRPLLCIGRKEIISYLESIGQAY 179 Query: 189 CEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 D +N D + R ++R + + ++ D + N + + Sbjct: 180 VTDSTNLQDEYTRNKIRLNLLPMMQEINPAVKESILKTAGHLDDAAIIYNKGIEEAKQRV 239 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300 +T I A+ Q+ TLLF +L G+ + + +F + + Sbjct: 240 MTDKGIQISALLQEP--SPETLLFEIL-----------HPLGFNASQTKDIFQAADGQPG 286 Query: 301 ---CVSIGRVVIDRR 312 + RVV DR Sbjct: 287 KIFANAGWRVVKDRE 301 >gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469] gi|255267344|gb|EET60549.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469] Length = 471 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 26/323 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + ++ VSGG+DS+ LL L R A+ V+H +R + + ++ + Sbjct: 12 RMIEAGDKVIAGVSGGADSLCLLFVLMEY---RKRVPFSILAVHVEHGVRGQESLEDAAF 68 Query: 73 VSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C I + +V + + + A R ARY + A I AH Sbjct: 69 VEKICREHTIEYRLVQVCVPELARREKLSVEEAGRRARYEAFERIRQETGADKIAVAHNR 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R G G + + + RP L C R +I +L + +W Sbjct: 129 DDQAETVLFQIARGSGLTGAG-------GIRPVRGAVIRPLLSCSRAEIEEYLRGHSQTW 181 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 D +N + + R R+R + + + + + +V + K L Sbjct: 182 RTDATNQETDYARNRIRHQILPLLEEQINSAGREHIAALAEELQRVQAYMEQETQKCLEE 241 Query: 245 HM---RSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + I+ L S L Y+LR S G + R + + L G+ G Sbjct: 242 LADFGEGTVQITVSALKEKPSLLQEYVLRESLRRAGCPLKDISRRHIADIKK-LAGGQSG 300 Query: 301 CVSI--GRVVIDRRANFLWITRA 321 ++ G R + L + +A Sbjct: 301 RQTMLPGGWQAVRSFDKLLLKKA 323 >gi|152995318|ref|YP_001340153.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1] gi|150836242|gb|ABR70218.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1] Length = 436 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 77/375 (20%), Positives = 134/375 (35%), Gaps = 24/375 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V SGG DS LL AL + ++ K K + V H L A D + + +C+ L Sbjct: 32 KVWVGFSGGVDSHVLLHALVNQITLAQ--KQKLFVLHVHHGLSANADDWLLHCETICNNL 89 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + Q + AAR ARY + +I+ AH DQ ET+ R Sbjct: 90 GVTFKAEKVQLES-QASIEDAARNARYQAFQANMGE--GDVILLAHHAGDQAETLLFRLL 146 Query: 141 RDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G GLSGM + + RP L ++DI + +Q + W D SN D+RF Sbjct: 147 RGTG--GKGLSGMPNERWLANGKARLIRPLLSVSKQDIEGYAIQHKLDWIHDESNFDERF 204 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQ-D 255 R +RR + + ++ AML + L+V + + Sbjct: 205 TRNFLRRRIVPALKERFPRMEQNMVSSADRIATDYAMLSQFAQQQLSVWCNPFGGLELSN 264 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 IL+ + R ++ S+E + K+ I R N Sbjct: 265 ILDKPLDERLFWWRHFLQTKNVSLTQSQLESVEVMFSGA-EDKQPEFEFANGRIMRHQNS 323 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQ----FQNLSDSLIQIGPQSYRKADVPSGIPPI 371 ++ + +L + T ++ ++ + ++ + S Sbjct: 324 AYLLPPDDVVKFAVLVDDVTI-----FRSFDCITVKGSDACELRARPLGESLIMSNGKTR 378 Query: 372 IAQRAL--SSMPSKE 384 ++ L ++PS Sbjct: 379 KLKKWLNDEAIPSWW 393 >gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911] gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911] Length = 462 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 76/297 (25%), Positives = 110/297 (37%), Gaps = 20/297 (6%) Query: 7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 F+R + +LV VSGG DS+ LL L R + +AI DH R Sbjct: 4 AKAEAFLRHHGVRLEGKKVLVGVSGGPDSLALLHLL---WKKRKVWGAEPAAIHFDHMFR 60 Query: 64 -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E + E R+V C I VS + AARE RY E K Sbjct: 61 GEESYQEARFVQSFCEERNIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASG 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A+ + H DDQ+ET+ MR R G SG+ + + I RPFL R +I Sbjct: 121 ASYLALGHHGDDQMETILMRLTRGS--TGEARSGIPFSRPFG-GGEIIRPFLCLERGEIE 177 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + L + DPSN D + R R RR V FQ ++ L+ Sbjct: 178 EYCLSNELDPRRDPSNEKDVYSRNRFRRNVLPFLKSENPQAHVHFQRFSEEL-RGDEQLL 236 Query: 239 PKYLTVHMRSIIAISQDI-LNIDSTLLFY----LLRVSAAICGGQISLPGYRSMERV 290 + M +++ +D + ID+ L R + + S+ + Sbjct: 237 QELTAREMNTVMKKKEDAEITIDAERFMLMPMPLQRRGIQLILNYLYQERPASLSAL 293 >gi|298368794|ref|ZP_06980112.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str. F0314] gi|298282797|gb|EFI24284.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str. F0314] Length = 430 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 72/301 (23%), Positives = 121/301 (40%), Gaps = 24/301 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL L + F A+ V H L A D + D C+RL I Sbjct: 14 VGLSGGLDSVVLLHMLSRLRQQHGF---SLRAVHVHHGLSPNADDWAEFCLDYCNRLSIP 70 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + K +G+ AAAR RY + S+ ++ AH DDQ+ET + R Sbjct: 71 IRIAHVRVKKGNSGIEAAARAERYRVFSDGLS----DILALAHHQDDQVETFMLAVVRGG 126 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + L+ M + I RP L R D++ + ++ + ED SN D + R Sbjct: 127 GLR--SLAAMPQQRDLNAETKIWRPLLPFTRSDLQHYAELHHLDFIEDESNKDSAYLRNW 184 Query: 204 VRRFVRDIDLHALYLKMKKF--------QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +R L A ++ F + L+ + ++ Y V+ ++++ Sbjct: 185 LRNE----ALPAWRGRIPHFDRHILSNIRSLQEDLELLDEIVRQDYEFVYGGGRFSVAKW 240 Query: 256 ILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 ++ S ++LR G G S ERV++ + + G V + R + Sbjct: 241 R-DLGSRRRRHVLRHFVLQHGLGTPSQSSISDFERVLMESDKAE-WKLPAGTVYLYRGSL 298 Query: 315 F 315 F Sbjct: 299 F 299 >gi|167751544|ref|ZP_02423671.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702] gi|167655352|gb|EDR99481.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702] Length = 324 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 26/314 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V + Sbjct: 22 KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 78 Query: 77 CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L I S K + + L AR RY +K LI TAHT D E Sbjct: 79 CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G LSG+C N I RP L REDI + + + + D + Sbjct: 136 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 188 Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D + R ++R V + +L+ + + + + + + + + Sbjct: 189 NLSDDYTRNKIRHKVVPLLKEINPSLFSAISRLSQSVSDDDRYLDKIASELMEKARTADN 248 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307 IL + R+ I P +++E + +++G +G ++ + V Sbjct: 249 KYDVGILRTADECILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 305 Query: 308 VIDRRANFLWITRA 321 I ++ F+ R Sbjct: 306 QIRKKKLFVVTDRE 319 >gi|157376277|ref|YP_001474877.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3] gi|157318651|gb|ABV37749.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3] Length = 494 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 25/339 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S+ + +++A SGG DS L L S R + ++ + V H L A VR+ Sbjct: 24 SVGSGSQLVLAYSGGVDSEVLAQGLASFA--RHNPQYRYLLVHVHHGLSSNADAWVRHCQ 81 Query: 75 DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ ++ + K P+ + A AR ARY I+ ++TAH DDQLE Sbjct: 82 SQAAKYQLPIEIRQVKVKMGPRLSIEAQARSARYEAITSLMAP--GDALLTAHHLDDQLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV + +R KG LS M + +D N + RP L RE I S + I+ ED S Sbjct: 140 TVLLALKRGLGPKG--LSAMGEVQAFDNNKQLLRPLLSISREQIESLATSQAIAHIEDES 197 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-I 252 N D +++R +R + L A + + + +I + ++ + S I + Sbjct: 198 NQDTKYDRNFLRLEIIP-KLKARWSSIAVTASRSAALCAQQQAVIDEEVSKRLPSYIVPV 256 Query: 253 SQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300 SQ D+ LLR G + +E+V +L + + Sbjct: 257 SQGNGTALELSDLREQGVNWQLLLLRGYIEYLG--FAPLSQVQLEQVLYQLLDARVDAKV 314 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339 + +G ++ R +++ I P WD Sbjct: 315 ELRLGDTLVRRFRGRAYLSSVEAEHAERINAP--ILEWD 351 >gi|294140020|ref|YP_003555998.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12] gi|293326489|dbj|BAJ01220.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12] Length = 467 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 17/311 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A +++A SGG DS L + L R + ++ + V H L + A V + Sbjct: 27 PGAKLVLAYSGGVDSELLALGLSEFA--RQHHEYRYLLVHVHHGLSDNADAWVGHCESRA 84 Query: 78 SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + S+ P+ + A AR ARY I ++TAH DDQLETV Sbjct: 85 TVYGLPISIKRVVVDTGPRKSVEAEARNARYNAIKSQMAP--GDALLTAHHLDDQLETVL 142 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R KG LS M + ++ + + RP L RE I + + D SN+D Sbjct: 143 LALKRGLGPKG--LSAMGSSQVFGKDKQLIRPLLSISREQIEAKASAVGLVHINDESNSD 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D+++R +R + L A + + + +I ++ + + I+ SQ Sbjct: 201 DKYDRNFLRLEIIPR-LKARWGAIATTASRSALLCAQQQAVIDDEVSERLPAFISFSQGR 259 Query: 257 LNIDSTLL------FYLLRVSAAICGGQISLPGYRSMER---VMLFLKSGKRGCVSIGRV 307 ++D LL + L I + P + + +L + + + +G + Sbjct: 260 YSLDLGLLGLQSDNWQSLLFRGFIEQLGFAPPSQTQLAQSLSQLLTARQDAKVELRLGDL 319 Query: 308 VIDRRANFLWI 318 +I R ++ Sbjct: 320 LIRRYQGRAYL 330 >gi|295401968|ref|ZP_06811930.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1] gi|294975970|gb|EFG51586.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1] Length = 462 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 136/360 (37%), Gaps = 34/360 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I V F++ L + ++V VSGG DS+ LL H S R I A VDH Sbjct: 2 IAEVCEFIKKHELLTPDSTVIVGVSGGPDSLALL---HFFWSIRQKWNITLIAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R +++++ +V C I V + + G+ AAR+ RY E + Sbjct: 59 RGKQSEEDMNFVKHFCQTRGIICEAAQIDVPAFQRQHKLGVQEAARQCRYRFFGELMEKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + +I RPFL R I Sbjct: 119 KADYLALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYIIRPFLAISRAHI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----V 230 ++ + I+ D SN D + R R R V + L+ + + + ++ ++ + Sbjct: 176 DAYCEKHQITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMAIEDELFL 235 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMER 289 I K + +I + + L +++ + S + Sbjct: 236 EELAEDAIKKVIKKQEDAIALKIKPFQAMPKPLQRRGIQLILNYLYKEIPSSLSSVHIHN 295 Query: 290 VMLFLKSGK-RGCVSI--GRVVIDRRANFLWITRAVR---------NLPTLILYPEETTV 337 ++ FL G + + G V+ L R + ++P ++ P + Sbjct: 296 LLAFLSRSHPSGRLDLPHGLKVVRSYDCCLLTFRKEKEDVSYAFKLDIPAVLPLPNNHVI 355 >gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228] Length = 464 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 129/330 (39%), Gaps = 25/330 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + F++ L+ + IL+AVSGG DS+ +L + + KI+ + +DH R Sbjct: 3 ARFKEFIQKNNLLLNSSRILLAVSGGPDSLAMLDLFDKLKEEL---KIEIAVAHLDHMFR 59 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINA 119 + +K E ++ + I + + AAAR+ R+ N Sbjct: 60 KESKSEADFIERFAKKRGIQFFSKRVNLPQIIKTNKVSAEAAARQERFTFFKNIIAKENF 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 L+ AH DQ ETV + R KG+G + L + P L +++I + Sbjct: 120 DLLALAHHKGDQAETVLLNLFRGCGLKGLGGIELQAKF---KELELIHPMLIFTKKEILA 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + Q+ +S D SN ++ + R +R + + + K+K+ K+ + A + Sbjct: 177 YCQQQKLSPSFDSSNQENIYSRNIIRNEILPLIEKKINPKVKEVIAKNSKLIASEAEFLE 236 Query: 240 KYLTVHMRS---------IIAISQDILNIDSTLLFYLLRVSAAICGGQ---ISLPGYRSM 287 K + II +L +D + + R + L + Sbjct: 237 KLAKKKYKELLVKEKSTKIIIDFNSLLALDQVIQRRIYRQIYKRLNNNLDDLYLEHIFEI 296 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 E+++ K+G+ ++ G V +N ++ Sbjct: 297 EKLIADKKTGRGVDIASGIRVEISYSNLIF 326 >gi|319790338|ref|YP_004151971.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1] gi|317114840|gb|ADU97330.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1] Length = 443 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 127/332 (38%), Gaps = 24/332 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + S + + +LVA+SGG DS+ LL L + + +A+ V+H Sbjct: 1 MFKEKVLSTCQKFNLIPPGSKLLVALSGGPDSVALLNVLLELRGELQLS--SLAAVHVNH 58 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 LR ++ + R+V ++C +L + + G+ AAAR+ RY + + Sbjct: 59 QLRGAESERDERFVKELCGQLGVPLFTERVTVNPKGKGVEAAARQERYRVFDRVLRLWKG 118 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + HT D ETV + + +G+ RP R ++ Sbjct: 119 DYVALGHTASDLAETVLLNLAKGTGIRGL-------RGFLPKRDRYVRPLFEVTRREVEE 171 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNN 232 +L + + + D SN FER +R R + ++ + + +N+ Sbjct: 172 YLELKGLPYIVDSSNLSTDFERNLIRIEVVPRLRRLNPRFEESVLRLTSTLRGIEFFLNS 231 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 V L+ ++ A +++L + L LL + G+ +R +E+ + Sbjct: 232 QVEALLERFTA--GGHFCAPLEELLKLPEVLQGELLIGAVKRLTGK--GLSFRKVEKCLE 287 Query: 293 FLKSGKRGCVSIGR---VVIDRRANFLWITRA 321 +K G S+G V+D + + Sbjct: 288 LIKKGSFARYSLGNGLTFVVDAGRACILPEQE 319 >gi|229825875|ref|ZP_04451944.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC 49176] gi|229789895|gb|EEP26009.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC 49176] Length = 477 Score = 214 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 112/291 (38%), Gaps = 25/291 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + I+ ++ ++ L I+ VSGG+DS+ LL+ L +L+ A+ ++ Sbjct: 14 MDSIDRIKKLIKENKLLHENEKIVAGVSGGADSVCLLLVLKDILN-----PENIVAVHIN 68 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114 H +R E A + +V +C + I + + + K + A R RY + E Sbjct: 69 HGIRGEEAARDEEFVKKLCEKYNICLEIRHLSIPEYSKKHKISEEEAGRILRYEVFEEIR 128 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + NA I AH +D ET + R G+ T + N I RP ++ R Sbjct: 129 QEKNADKIAVAHNMNDTAETFLLNLSRGSGITGL-------TGIKISNSRIIRPLIKTSR 181 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++I ++ D +N + R R+R V ++ + K+ Sbjct: 182 DEIEKIAEYYGEAFITDSTNNSLIYARNRIRNKVLPELSQVNEQAVRHINEAADKLGKIE 241 Query: 235 AMLIPKYLT-----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 L+ + V + + I I ID+ L+ +L + G+ Sbjct: 242 GYLLRESEKAYKKYVDAKETLLIKNAITEIDAVLIEEVLHRALTEVAGKAR 292 >gi|195953926|ref|YP_002122216.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933538|gb|ACG58238.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 306 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 13/271 (4%) Query: 1 MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + E+ + F +L+ IL+ SGG DSM L ++ + + I+ + Sbjct: 3 LARKIFEANKLF--NLIEKGDKILIGFSGGVDSMVLSCLMYKL---KDALGIEIGLAHFN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H LRE A ++ + D L++ V S+ + + AR+ RY + + +K Sbjct: 58 HHLREDADEDEAFCIDFAKSLKLPIYVESFDIKSLKGNIEENARKKRYEFLQKTSKKEGY 117 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I TAH DD ET+ + R GL G+ Y N I RP + +++IR+ Sbjct: 118 NKIATAHHLDDLAETMILWFVRGG-----GLKGLSGFKAYKEN--IIRPLITATKDEIRA 170 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 F +++++W ED +N D+ R +R V I + + + + A L Sbjct: 171 FAKEQHLNWKEDYTNYDETISRNLIRHKVIPILKTINPNFLSTVLQESIILQDEEAFLED 230 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 V + + + + ++R Sbjct: 231 YTEHVIKNIDVFDVKSLKQEPRAIQRRIVRK 261 >gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J1-194] gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL J1-175] gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL J1-194] Length = 648 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 102/266 (38%), Gaps = 17/266 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A + V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANGQNVVEAFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + Q G+ AR RY + + AH DDQ+E Sbjct: 77 ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272 + + + N + L + + Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279 >gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2] gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2] Length = 422 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 156/396 (39%), Gaps = 21/396 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA + +AVSGG DSM LL + + A++VDH LR + E V+ C+ Sbjct: 30 PAVLGLAVSGGGDSMALLHLAVA-------AGLPCRAVTVDHGLRAESAAEAAGVARACA 82 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + W+ + L AR ARYALI+E A + H DD ET+ +R Sbjct: 83 ALAVPHDTLRWQGWDGRGNLQDQARRARYALIAEWALAHGIAAVALGHNRDDVAETLLLR 142 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + RP L R ++R +L R + W +DPSN + R Sbjct: 143 LARGAGVDGLAAM---AARRRHQGVNWLRPLLEIGRGELRDWLAGRGVVWVDDPSNDNAR 199 Query: 199 FERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 F+RVR+R+ + L +R + KY + ++ Sbjct: 200 FDRVRLRQAAGTLAALGLTTERLAEVAGHLAQVRAALEVQTRDAARKYARIEAGDVVIDP 259 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + ++ + LL + P ++ + L++G+ + R+++ Sbjct: 260 AALHDLPEEIARRLLASALIRVSSAEYGPRGPALAAALAKLRAGRPATLLGCRMLLRPE- 318 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373 L + R + + + + +WDGR++ + +++ Sbjct: 319 -GLRVLREWQAVRDHVTTAD--ALWDGRWRVYGPEINGLELRALGAAGLARCPDWRATGV 375 Query: 374 QRA--LSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407 RA L+S+ + G + L AP + F + +A A Sbjct: 376 PRASLLASVSAWRGAELLAAPLAGFGLGWRAEIAPA 411 >gi|304415319|ref|ZP_07396004.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella insecticola LSR1] gi|304282837|gb|EFL91315.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella insecticola LSR1] Length = 424 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 126/306 (41%), Gaps = 23/306 (7%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 SGG DS L+ L + L + AI + H + A D V + C + ++ Sbjct: 2 GFSGGLDSSV-LLHLLTRLRTGQRPDLIIRAIHIHHGINPQANDWVEHCQYQCQQWQVPL 60 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 +V + + + G+ AAAR ARY S H + +++TA DDQ ET + +R Sbjct: 61 EIVPVQLNTRKNGIEAAARAARYHAFSTHL--TDKEVLLTAQHQDDQCETFLLALKRGSG 118 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GLS M + + + + RP L C R+++ + + I W ED SN D RF+R + Sbjct: 119 P--TGLSAMASKMAFAQS-QLLRPLLSCSRQNLMDYAQRHQIQWVEDESNQDRRFDRNFL 175 Query: 205 RRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDI 256 R+ + + L + F + L+ + LT + + Sbjct: 176 RQEIIPL----LNQRWPHFSQTVTRSASLCAEQEQLLDELLTATLDQWQHTDGSLTTDGL 231 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRA 313 + + +LR + +S+P ++R+ + + C+ +G+ + R Sbjct: 232 ITMSEVKRNAVLRRW--LSRHHVSMPSRDQLQRLWHEVVLARIDANPCLQLGQHQVRRFR 289 Query: 314 NFLWIT 319 L+++ Sbjct: 290 QRLYLS 295 >gi|298505922|gb|ADI84645.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter sulfurreducens KN400] Length = 471 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 155/390 (39%), Gaps = 36/390 (9%) Query: 3 LSPIESVRFFVRSL-------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 LSP+++V VR+ ++VAVSGG+DS+ L+ L S+ R + Sbjct: 4 LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADSVALVDILVSLNELR----LDLVV 59 Query: 56 ISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALI 110 ++H LR + ++ R+V + V + L A R ARYA Sbjct: 60 AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWERLSLEDAGRRARYAFF 119 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A A + AH DDQ ET+ MR R G+GLS M RP L Sbjct: 120 DDVAAACGARTVALAHHADDQAETLLMRLVRGAG--GLGLSAMQ---PVGAGGKYVRPLL 174 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKF 223 R++I ++L R +++ +D SNTD F R R+R + L + Sbjct: 175 ALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIRHELVPYLGRLNPGAASRLARTAELL 234 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLP 282 D ++ V + +++ V + S D + L L R + A+ G ++ Sbjct: 235 ADDEALLSRLVEEALRRHVMVTEQGGAICSVDTLRREPRGLRRRLYRKAIALAKGDLARI 294 Query: 283 GYRSMERV-MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 + ++ + L L G + + +++ R N + R + ++P+L + G Sbjct: 295 SFDHVDAIDRLVLSENPSGRLHLPEEILVTRSYNEVAFARRMADIPSLQELWIDG---PG 351 Query: 341 RYQFQNLSDSLIQI--GPQSYRKADVPSGI 368 + + +++I GP + + Sbjct: 352 CWPLSGGGELVVEIATGPPPWGELSTTESW 381 >gi|33519753|ref|NP_878585.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus] gi|61216604|sp|Q7VRC9|TILS_BLOFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33504098|emb|CAD83359.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus] Length = 531 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 30/329 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHCLRE 64 +R +V ++L+A SGG DS LL L + F A+ V H L Sbjct: 18 IRCIVKYRNLLLAYSGGMDSTVLLDILTKLKKYFDFQVKGTSKILPFFLRAVYVHHGLNN 77 Query: 65 TAKDEVRYVSDVCSRLRIAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 A + C + ++ SK + + A AR+ RY + K + Sbjct: 78 KADYWADHCLQQCKMRNVPFHIIYINHSDLSKIKCNIEAMARDFRYKALFNALKPE--EV 135 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIR 178 ++TAH +DQ+ETV + +R GLSGM ILY N + RP L+C ++ Sbjct: 136 LLTAHHMNDQVETVLLALKRGSGP--AGLSGMTQDILYQHNEYQHRLLRPLLKCSHIQLQ 193 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + ++ ++W ED +NTD RF+R +R V + + K ++ L+ Sbjct: 194 EYAYRKKLTWVEDDTNTDVRFDRNFLRVQVIPL-FQKRWPAFNKVVSRTAQLCREQENLL 252 Query: 239 PKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-- 291 + L+ + +I I + +LR + I++P Y+ ++ + Sbjct: 253 HELLSESLDQLIDIDNALFFYPLIKYSDVRRRVVLRYWLSRF--FINMPSYKLLDCIWKE 310 Query: 292 -LFLKSGKRGCVSIGRVVI-DRRANFLWI 318 K + + +G+ I R L+I Sbjct: 311 VALSKVDSQSILHVGKKYICRRFRKKLYI 339 >gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4] gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4] Length = 471 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 121/317 (38%), Gaps = 22/317 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L ++V VSGG DS+ LL L+ + D+ + + H LR A +E V Sbjct: 15 RMLFPGDKVVVGVSGGPDSVALLDLLYRLREDKE---LSLYVAHLHHGLRAEADEEAAMV 71 Query: 74 SDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 S++ R + + K + + AARE RY + E A + A I H D Sbjct: 72 SELARRYGLPFFLDRVDVKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIALGHQAD 131 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV + R G+ + + RP LR RR +I ++ R +S C Sbjct: 132 DQAETVLLHLLRGTGLSGL-------RGIPPVRGPFIRPLLRVRRAEIEAYCQWRGLSPC 184 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 D SN + R R+R + + + + ++ + K R + Sbjct: 185 LDLSNWSLEYTRNRIRHQLLPLLAREFNPSIVEVLCRLAEIAREEDEFLEKEAGKAYREL 244 Query: 250 IAISQDIL--------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 +++ L + L ++R++ G+ + R L+ +GK Sbjct: 245 RREAEEGLGLALEPLKTLPLALARRVVRLAYRELVGEELPFEHVEAVRQWLYRPTGKELS 304 Query: 302 VSIGRVVIDRRANFLWI 318 + V+ + +++ Sbjct: 305 LPKNVKVVREYDSLVFL 321 >gi|90407914|ref|ZP_01216089.1| mesJ protein [Psychromonas sp. CNPT3] gi|90311005|gb|EAS39115.1| mesJ protein [Psychromonas sp. CNPT3] Length = 441 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 35/395 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DS+ LL + + + A V H L A D + + S +C L + Sbjct: 26 IALSGGMDSVVLLHLFSRLHNGK------VMAHHVHHGLSAHADDWLLFCSTLCKALNVD 79 Query: 84 HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K ++ L A ARE RY + E+A T ++TAH DDQLE++ + +R Sbjct: 80 FCATRVHLDKKNRSSLEAVAREHRYKALQENASVT--TCLVTAHHQDDQLESILLALKRG 137 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ + + + RP L R+ I + +++W ED SN D RF+R Sbjct: 138 AGLTGLQGVLATQKLPKGM---LIRPLLDVSRQQIEDYAALFSLAWIEDESNQDQRFDRN 194 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA--ISQDILNID 260 +R + + L A + + K A LI + V + I ++ +LNI Sbjct: 195 FIRHSITPL-LKARWPSIAKTAARSALHCQAQQTLIDELTEVDFKLCIRRLLNDAVLNIS 253 Query: 261 STLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRA 313 + R S + +++ P + + + + G ++ + + R Sbjct: 254 ALKALTATRRSNVLRQWFKSVELAYPSTKQLIALWHDIALCDEGACPKMNFKSMSVRRYQ 313 Query: 314 NFLWITRAVRNL--PTLILYPEETT--VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369 + L+ + + ++ E + G+ Q + +S + Q + +P Sbjct: 314 DDLYFVDEQKMQIEKEVCVWKGEDILFLCAGKLQIK-ISANAGFTAKQHCVEIRFRQHLP 372 Query: 370 PIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404 +LS P + + + +++LP Sbjct: 373 A-----SLSCQPIHRYASRSI---KKLLHEYNLPP 399 >gi|39996909|ref|NP_952860.1| cell cycle protein MesJ [Geobacter sulfurreducens PCA] gi|61216575|sp|Q74C65|TILS_GEOSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39983797|gb|AAR35187.1| cell cycle protein MesJ, putative [Geobacter sulfurreducens PCA] Length = 471 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 155/390 (39%), Gaps = 36/390 (9%) Query: 3 LSPIESVRFFVRSL-------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 LSP+++V VR+ ++VAVSGG+DS+ L+ L S+ R + Sbjct: 4 LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADSVALVDILVSLNELR----LDLVV 59 Query: 56 ISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALI 110 ++H LR + ++ R+V + V + L A R ARYA Sbjct: 60 AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWERLSLEDAGRRARYAFF 119 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A A + AH DDQ ET+ MR R G+GLS M RP L Sbjct: 120 DDVAAACGARTVALAHHADDQAETLLMRLVRGAG--GLGLSAMQ---PVGAGGKYVRPLL 174 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKF 223 R++I ++L R +++ +D SNTD F R R+R + L + Sbjct: 175 ALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIRHELVPYLGRLNPGAASRLARTAELL 234 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLP 282 D ++ V + +++ V + S D + L L R + A+ G ++ Sbjct: 235 ADDEALLSRLVEEALRRHVMVTEQGGAICSVDTLRREPRGLRRRLYRKAIALAKGDLARI 294 Query: 283 GYRSMERV-MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 + ++ + L L G + + +++ R N + R + ++P+L + G Sbjct: 295 SFDHVDAIDRLVLSENPSGRLHLPEEILVTRSYNEVAFARRMADIPSLQELWIDG---PG 351 Query: 341 RYQFQNLSDSLIQI--GPQSYRKADVPSGI 368 + + +++I GP + + Sbjct: 352 CWPLSGGGELVVEIATGPPPWGELSTTESW 381 >gi|114048184|ref|YP_738734.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7] gi|113889626|gb|ABI43677.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7] Length = 465 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 130/333 (39%), Gaps = 21/333 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M LS + L + +++A SGG DS L L + I V H Sbjct: 4 MELSAHIARFLASLPLQTGSKLVLAYSGGVDSEVLAYGLSEFAKHHPELHYQL--IYVHH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119 L A ++ + + +V + + P+ + A AR RY I +H K Sbjct: 62 GLSPNADAWAKHCQTRAASYGLPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQ-- 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDI 177 +++TAH DDQLET+ + +R KG+ G + RP L RE I Sbjct: 120 DVLLTAHHEDDQLETILLALKRGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQI 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 F R + ED SN DD+++R +R + L A + + ++ + Sbjct: 180 EVFAQTRQLVHIEDESNQDDKYDRNFLRLEIIPR-LKARWPSIATTASRSAQLCAEQQAI 238 Query: 238 IPKYLTVHMRSIIAISQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + ++ + ++ + D L+ ++ + L + I +LP Y ++ Sbjct: 239 VDAEVSERLPRLLTEAPITQQLVLKLDALSTQTSE-WQGLLLRGFIESQGFALPSYVQLQ 297 Query: 289 RVMLF---LKSGKRGCVSIGRVVIDRRANFLWI 318 +++ K + + IG V+ R A L++ Sbjct: 298 QILQQLMGAKEDAKVQLQIGDCVLRRFAGMLYL 330 >gi|301062530|ref|ZP_07203173.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2] gi|300443387|gb|EFK07509.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2] Length = 478 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 127/348 (36%), Gaps = 22/348 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + IE + L +LVAVSGG DS+ LL L + S + DH L Sbjct: 5 IKRIEKTIYRFNMLDSEDRVLVAVSGGPDSVVLLDLLSRLKDALS---LTLVVAHFDHGL 61 Query: 63 RETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINA 119 R + E R+V+ + + + + G+ AR+ RY + A Sbjct: 62 RPRDDEGETRFVAALADAMNLPFVTEKALSPPGGNGISLEEEARDLRYEFLYGAKAAHGA 121 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I HT DDQ ETV MR R GLSG+ D I RP + R +I Sbjct: 122 HKIALGHTLDDQAETVLMRLLRGSGP--TGLSGIPPVRHPD----IIRPLIEVTRLEIER 175 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNN 232 +L RN+ DPSN + + R R+R + + L + + + Sbjct: 176 YLAHRNLKHITDPSNFEKQHLRNRIRLELLPQLKTYQPGIVRILGQTAEIMGNENRWMEK 235 Query: 233 AVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 I +TV ++ +D + L ++R G + R ++ V Sbjct: 236 EAMGWIEGAVTVSETGDNSVPLEDFGKLAPALQSRVIRRIIRRLQGGLRRIHLRHIDAVK 295 Query: 292 LFLKSGKRGCVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + + +++ G VVI L+ R+ L + E V Sbjct: 296 GLTRGRPQKRLNLPNGVVVIRTYDTLLFTQRSEEEHKELHITLEGPGV 343 >gi|331087219|ref|ZP_08336289.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408905|gb|EGG88366.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 505 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 18/264 (6%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 VR ++ R ++ +SGG+DS+ L LH + + +K A+ V+H +R Sbjct: 20 ARVRAYIQEHRMFERGETVITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIR 76 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E A + R+V ++C I +V K + + A R R A+ Sbjct: 77 GEDADADERFVQNICKTAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYG 136 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH +D ET+ M R GM T + + RP L R +I Sbjct: 137 AAKIALAHHKNDNAETLLMNLVRGTGLNGM-------TGIKPVRDRYVRPLLCLERREIE 189 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 FL Q I + D +N + + R ++R V + + + + V + Sbjct: 190 GFLEQNGIRYQTDQTNLTEDYTRNKIRNRVIPYMENQINPRAAAHLSEAAEQLRGVQEFL 249 Query: 239 PKYLTVHMRSIIAISQDILNIDST 262 K L V + ++ + L I + Sbjct: 250 EKQLKVFKENCVSRKGEKLLIRTE 273 >gi|307825179|ref|ZP_07655399.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96] gi|307733635|gb|EFO04492.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96] Length = 451 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 145/383 (37%), Gaps = 36/383 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +A SGG DS LL S+ + K K +A+ V H L+ A+ ++ + Sbjct: 33 RFYIAYSGGVDSHVLLHCCASI----THLKDKLTAVYVHHGLQAEAESWAKHCEKTAKDV 88 Query: 81 RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + N+ P AAR ARYA + K +A ++ A +DQLETV ++ Sbjct: 89 GVEFLTLRVNANAAPGESPEEAARNARYAALKSLIKADDA--LLLAQHREDQLETVLLQL 146 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G LSGM + + + + + RP L ++ I + +SW EDPSN + + Sbjct: 147 FRGSGLRG--LSGMSERMAFGAGVML-RPLLNTPKQAISDYAHAHQLSWVEDPSNQSNDY 203 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R +R V + L + + K K +L+ + ++ L+I Sbjct: 204 DRNFLRNAVVPL-LKQRWSAIDKTVARSAKHCADAQVLVDEVADELFGAVFNPVDKTLSI 262 Query: 260 ------DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC---VSIGRVVID 310 S ++R G + +P +ER++ + + +S I Sbjct: 263 SRLSEHHSHPQQLIVRHWFRHRG--LKMPAQAKVERILNEVVAAAGHRDPVLSGQGYSIR 320 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPSGIP 369 R + L+ + + VW + + I+I GI Sbjct: 321 RYRDKLYCLTNLSGTEP------QDRVWP-------VGQASIKITDDRTLSCVPSSKGIS 367 Query: 370 PIIAQRALSSMPSKEGGKPLLAP 392 Q A + + GG+ + P Sbjct: 368 RERWQDATVEVRFRRGGEKIRLP 390 >gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON] gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON] Length = 475 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 68/334 (20%), Positives = 124/334 (37%), Gaps = 28/334 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 S V ++R + I+V VSGG DS LL L S+ R + V+H Sbjct: 9 SVQNRVMLYIRKYKMIQPGQKIVVGVSGGPDSSALLHVLMSL---RGKLDAELIVAHVEH 65 Query: 61 CLRET-AKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R + ++ +YV + R+ + H V + A R RY + + Sbjct: 66 GMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQICR 125 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I AH DD ET+ + R G+ + + I RP L R Sbjct: 126 YRGCNSIAVAHNKDDNAETILLHILRGSGLDGL-------VGIRPVRGDIIRPLLDVSRT 178 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVN 231 DI ++ ++ D +N D + R R+R F+ + + + + N Sbjct: 179 DIEAYCAAAGMNPRRDYTNNDPSYMRNRIRLKLIPFLSQNFNPNIVDSLVRMSHILSDDN 238 Query: 232 NAVAMLIPKYLT--VHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++M + + VH+ IA+ D + L LLR + G Y + Sbjct: 239 EFLSMCVEEAFKRSVHIDDDIAVLHIPDFKTLHKALQRRLLRYIISKLKGDADSIEYLHI 298 Query: 288 ERVMLFLKSG--KRGCVSIGRVVIDRRANFLWIT 319 E++M +++ G + ++ + + ++I Sbjct: 299 EQLMAYIEQGCVGQKLTLPADIMAEHGNDKVYIY 332 >gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2] gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2] Length = 475 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 83/414 (20%), Positives = 147/414 (35%), Gaps = 25/414 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ + R + I+ AVSGG DSM LL L ++ A V+H Sbjct: 8 LLTDMMKYRATEQLWSKGDRIVAAVSGGPDSMALLHLLWQAARQ---EQLTVIAAHVNHG 64 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116 R + ++ E V +L + ++ + +AARE RYA + E A Sbjct: 65 FRKDASRQEAEVVRQYAEKLGVPFEMIELDMPAYIEETGINAQSAAREKRYAFLHETAVK 124 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A+ I AH DDQ ETV MR R GL+GM + N+ + RP LR + D Sbjct: 125 YGASAIALAHHADDQAETVLMRVIRGAGL--TGLAGMAPKR-KEKNVELIRPLLRMNKSD 181 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNA 233 I + +R++ +C D SN + + R VR V L +++ D+ ++ Sbjct: 182 IVRYCSERDVPYCLDSSNNERYYFRNVVRLDVIPYLSQFNPQLNHSLRRIADVAGAEDDW 241 Query: 234 VAM----LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + + L +T+ + +++ + L L+++ + + ++E Sbjct: 242 MELEGQRLFTSLVTLSPDECKLNAGELIGLHVALQRRLIKLILNYLSKDAEIASFDAIET 301 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 + L + + R ++ + + T D Y F D Sbjct: 302 MRLAAAPAAPSTWRYD------AGSGVRCIREYSSIRWVRVLNASGTSEDS-YAFSISGD 354 Query: 350 SLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 S R + + A S + + + R D Sbjct: 355 SKSAFITAGGRALHIERLKRGEAVKPAGRSEVCFDADRLVFPLMVRNRQPGDRI 408 >gi|302672259|ref|YP_003832219.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus B316] gi|302396732|gb|ADL35637.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus B316] Length = 475 Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 18/249 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V F+R+ + + +L SGG+DS L++ L S+ IK A+ V+H +R Sbjct: 6 NKVYDFIRANNMIDPGSTVLAGFSGGADSTALMLTLCSLSK---VLNIKLVAVHVNHGIR 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 E A ++ +V + C I V + K + A R ARY +E AK Sbjct: 63 EEAIEDETFVKNFCEEHDIECVVYKKDIPKLSKKWKMTEEEAGRRARYEAFTETAKKHGT 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++I AH +D ET+ M R G G + + I RPFL R +I Sbjct: 123 SIIAVAHHQNDVAETLLMNLIRGSGLHGAG-------AIRPVRGNIIRPFLCVDRAEIEK 175 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLI 238 +L + +C D +N ++ R +R + + K ++ A + Sbjct: 176 YLKGKRQLFCHDKTNDENIHTRNIIRNILIPKMEKEVNKKAVAHLCRAAIEFAKADGYIQ 235 Query: 239 PKYLTVHMR 247 + V+ R Sbjct: 236 DEAEKVYHR 244 >gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str. F0412] gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str. F0412] Length = 332 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 136/318 (42%), Gaps = 24/318 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + IL+A SGG DSM LL L + + R K K VDH +R +KDEV ++ Sbjct: 18 KLFPEHSRILIACSGGPDSMALLHLLQDIAAHR-HTKYKLGIAIVDHSIRPESKDEVLWL 76 Query: 74 SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L ++ ++ + R RY ++E A++ I AH D Sbjct: 77 RNQVDALGLSFYTTTFDVPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVAHHKD 136 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ E++ R G L+GM + D ++ + RP L + ++ ++L R +++C Sbjct: 137 DQAESILAHLIRGTGLNG--LTGMA-VVSNDYDIPVIRPLLDVTKAELLAYLADRKLTYC 193 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---------- 239 D +N D R++R R+R + + L D ++ ++V+ + Sbjct: 194 IDSTNDDIRYQRNRIRHRI----IPELESINPNVVDAIARLGSSVSEDLAVISNLTVQAF 249 Query: 240 KYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + L ++ + +S+ L + + L + + I+L E+++ + +G+ Sbjct: 250 ERLVTIDKNEMRLSRKALRKEPVAIQRRLWQRLVSSIDSDITL-TTAHQEQLLDIVNTGE 308 Query: 299 RGCVSIGRVVIDRRANFL 316 +I + + + + + Sbjct: 309 GKTFTIKSIKVTAQCDTI 326 >gi|301309867|ref|ZP_07215806.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3] gi|300831441|gb|EFK62072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3] Length = 438 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 32/343 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R ++ R L +LV +SGG+DS+ LL L + A+ + L Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + + + L + + + + + AARE RYA E + + Sbjct: 55 RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I AH DD +ETV M R +GM + + N +I RP L REDI Sbjct: 115 GGQAIAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + ++ D +N D + R +R V + L + + R + + A Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294 I Y+ R + +S D L+I + + F + G L + Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336 + GK S R++ DR ++LWIT + T +L PE+ Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEERTFVLDPEKGI 324 >gi|163789070|ref|ZP_02183514.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1] gi|159875734|gb|EDP69794.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1] Length = 439 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 23/258 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + I+ F+ + +L+A+SGG DS+ L H + F+ + Sbjct: 5 FRNHIDKDLLFL----NESKLLIAISGGIDSVVLAHLCHQFQ-------LNFTLAHCNFN 53 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR E + + +V ++ +L + + ++ + + + AARE RY +E A+ Sbjct: 54 LRGEESNADEDFVLELADQLNVEVFIQNFDTQTYADENKRSIQMAARELRYDWFTELAEQ 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I+TAH DD LET + R G+ T + ++N I RP L+ RE Sbjct: 114 LKFDYILTAHHADDNLETFLINFTRGTGLNGL-------TGIPEINDNIVRPLLQFSREQ 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I S+ + I W ED SN+ ++ R ++R V I + F + +N+ V + Sbjct: 167 IESYANENAIKWREDSSNSSRKYLRNKLRHEVVPILKEINPQLLDSFMNTLDNLNDTVNI 226 Query: 237 LIPKYLTVHMRSIIAISQ 254 + V R+I I Sbjct: 227 VEESLNAVTKRTITKIDD 244 >gi|304383098|ref|ZP_07365573.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella marshii DSM 16973] gi|304335784|gb|EFM02039.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella marshii DSM 16973] Length = 444 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 87/422 (20%), Positives = 146/422 (34%), Gaps = 44/422 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + + R L LVA+SGG+DS+ LL L+ + A+ + Sbjct: 1 MFSKTVSNYIAIHRLLQKEGKYLVALSGGADSVALLFLLNRL-------HYHLEAVHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 LR E A + + +C L I V + S + AARE RY K Sbjct: 54 KLRGEEADRDEAFCQKLCRSLNIPFHTVHFDTSSYARLHGISIEMAARELRYNYFESLRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 ++ I AH DD +ET+ + R G GL G+ + N +I RP L R Sbjct: 114 DLSCDGICIAHHRDDIVETMLINLVR-----GTGLHGLQG--ILPRNGFILRPLLCVGRM 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I +L ++ D +N R ++R + + + V+ A+ Sbjct: 167 EIEQYLRDIGQTYITDSTNLVADVVRNKIRLNIIPLLKDINPAACESMAKTAFYVSEAIK 226 Query: 236 MLIPKYLTVHMRSIIAIS----QDILNIDST--LLFYLLRVSAAICGGQISLPGYRSMER 289 + R +L S LLF++L Q +E Sbjct: 227 VTEAALQKATQRVCTMPHTLSIPRLLEEPSPEYLLFFIL---------QQYGFRSAQIED 277 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQFQN 346 + L + + + L + + + + PEE T + R+ FQ Sbjct: 278 IYTHLHASPGKEWLSATHRLLIDRDRLLLQETEKEVSKPLKIPEEGTYVYRKNVRFSFQT 337 Query: 347 LSDSLIQ--IGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPLLAPF--SRFMTK 399 + + I + D P+ + +P G L++ F R MT+ Sbjct: 338 IQTNPGTPVIRDPLWACLDADEVQFPLFIRCTAEGDRFVPFGMKGSKLVSDFMTDRKMTR 397 Query: 400 FD 401 F+ Sbjct: 398 FE 399 >gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001] gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001] Length = 435 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 149/385 (38%), Gaps = 30/385 (7%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 FF P + +AVSGG DS+ L SF + A+ VDH LR + E Sbjct: 37 FFPDQSDCP-PVAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGLEA 88 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + I ++ + K + + AREARYA + + T ++ H DD Sbjct: 89 HQTLARLQAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV+MR +G+ G ++ + RP L R+ +R+ L Q ++ W + Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWITVRP---DIRLIRPMLGFSRQALRNTLRQAHVEWVD 205 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 DPSN D R ERVR+R ++ D A + ++ + R+ A + +++ + Sbjct: 206 DPSNQDQRAERVRLRYLLQKNDQRAHFWQLGMQSGQFRMCRERERAAQLAQHIVMRPEGW 265 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + ++ ++D +L GG P ++ R+ ++ + Sbjct: 266 AILGSELPDVD------VLAALIRSIGGAEYPPSQSAVARLKDMAAEA-----TLAGTRL 314 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPS 366 R + R + + + E TVWD R+ + + + + Y + Sbjct: 315 FRHEQQWALMREEAAMASAM-QAENGTVWDNRFVLRLPTSVQKEGLMVAAAGYG---LAR 370 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391 + R + +P+ +A Sbjct: 371 KMRNGQQARFCAVLPALWRAGKRVA 395 >gi|289422484|ref|ZP_06424327.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L] gi|289157056|gb|EFD05678.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L] Length = 462 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 128/319 (40%), Gaps = 24/319 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVC 77 I+V +SGG DS+ LL LH + + I+ A+ ++H +R A + YVS +C Sbjct: 19 GDRIIVGLSGGPDSVCLLHVLHRLSLKMN---IRVYAVHLNHQIRGLDAHLDALYVSKLC 75 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L IA + S K GL AR RY + E I A I H +DQ E Sbjct: 76 HKLGIACFIRSIDVPKYCSENGLGLEDGARNLRYMIFKEVKDRIGANKIAVGHNKNDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R KG LSGM Y + + RP L R DI S+ +++ D + Sbjct: 136 TVIMRIMRGTGIKG--LSGMD----YVRSDGVIRPILDLDRSDIESYCKDHSLTPRIDST 189 Query: 194 NTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY----LTVH 245 N + + R ++R + RD + + + N+ + + Sbjct: 190 NLEAIYSRNKIRLNIIPYMRDEFNENIIETLVRMSRGMRMDNDYIDSQAQAAYKMSSKKY 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSI 304 + + + + + ++ ++ + + + V+ L K + + Sbjct: 250 TNGVYLFTDQVRDQHEAIRSRMVILAIQDILSSVKSFDKKHFDDVLGLLDDSKIDKQIDL 309 Query: 305 GR-VVIDRRANFLWITRAV 322 R +++ R+ ++L T+ Sbjct: 310 PRGLIVYRKKDYLLFTKEA 328 >gi|85859371|ref|YP_461573.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB] gi|85722462|gb|ABC77405.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB] Length = 476 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 32/334 (9%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ +R ++ L H++ AVSGG DS+ LL L S+ + ++ S ++H L Sbjct: 2 LDKIRRTIQKYHMLNPGEHVIAAVSGGPDSVALLHVLISLACE---YELTLSVAHLNHGL 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAK 115 R + E + V + I+ SV K + + L R+ RY + A Sbjct: 59 RGSESDAEEQLVRQLSKERGISCSVKRIDLQALRKCDRRKCSLEDIGRQERYEFFTALAA 118 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I A+ I H +DQ ETV M R +G+ I + RP L R Sbjct: 119 EIGASRIALGHHREDQAETVLMNFIRGSGLEGL------KGIRPVRDGCFIRPLLEVSRR 172 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVN 231 DI FL ++ + ED SN++D F R R+R ++++ + + + ++ + + Sbjct: 173 DILDFLQAEHLPFLEDSSNSEDHFLRNRIRHHMIPLLQELYNPRIIDTLNRLAEIARRED 232 Query: 232 NAVAMLIPKYL------TVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY 284 + + ++ + L ++ ++IS L+ +D L + L++ C + Sbjct: 233 DCLKSIVDRILEDLLITSLSEEGTVSISISRLHELDEALQYRLVKSLLERCVLSPRRVAF 292 Query: 285 RSMERVMLFLKSGKRGCVSI--GRVVIDRRANFL 316 ++ V + K + G V++ R + L Sbjct: 293 THIQAVANLCREEKSVGLLFLPGNVLVRREYDNL 326 >gi|288554678|ref|YP_003426613.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4] gi|288545838|gb|ADC49721.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4] Length = 465 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 20/287 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 + VAVSGG DSM LL L + R I+ A+ V+H LR + D+ +YV C+ Sbjct: 21 VFVAVSGGPDSMALLHYL---IKRREMYGIEVEAVHVNHQLRGAESVDDEQYVRKFCTEH 77 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I S+ + G AA E RY E + + I TAH DDQ ET+ Sbjct: 78 NIPLHTKKMDVQTFASQNKMGTQKAASELRYQWFDEWLENRPHSCIATAHHGDDQTETIL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M R + SG+ + N ++ RPFL +E+I + + I+ D SN Sbjct: 138 MTMVRGGNL--LVPSGINVKRIL-QNGFVIRPFLGITKEEIEHYCKREGITPRIDSSNHS 194 Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-----LTVHMRS 248 ++ R R R+ + + ++++ M++FQ+ + + + L + + +S Sbjct: 195 MKYTRNRYRQQIMPFIKSENPSVHIHMQRFQEWQRDDQSYLMELAEEAFKSIVVKKSEQS 254 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR-SMERVMLFL 294 I + + L ++ + G+ S +E+++ L Sbjct: 255 ITISIEATERLRFPLQRRVIHLILRYLYGKNSPSSTSIHIEQIIRLL 301 >gi|228476217|ref|ZP_04060920.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119] gi|228269702|gb|EEK11201.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119] Length = 433 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 19/261 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H+ VAVS G DSM LL +L+D S+ + + V+H LR+ + +E R++ C + Sbjct: 12 DHLAVAVSTGIDSMCLLY---KLLNDLSYSYQSITCLHVNHGLRDASVEEERFIKQFCKQ 68 Query: 80 LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V S+ + + AR+ RY E INA +++TAH +DQLET++ Sbjct: 69 YQIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIF 128 Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + + +G+ + + +I RP + + DI+ + ++ + ED SN Sbjct: 129 YRVFTGRSTRNSLGMHECTE----RNHYFICRPLIETYKNDIKQYQTIHHVPFYEDESNH 184 Query: 196 DDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM-R 247 +++ R +R + LK+K + D+++++ ++ I +Y+ +++ Sbjct: 185 HNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQQRISCFIEQYVNIYLNE 244 Query: 248 SIIAISQDILNIDSTLLFYLL 268 I +S+ N + +L Sbjct: 245 ERIQLSRASFNQLDEISKMIL 265 >gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032] gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032] Length = 467 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 18/249 (7%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + F++ + ++V VSGG DSM LL L+ R G + A VDH Sbjct: 1 MNRIESFLKKHDVYLENTTVIVGVSGGPDSMLLLHELNK----RRKGSFQLIAAHVDHMF 56 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + ++ +V C I + + AAARE RYA + + Sbjct: 57 RGEESFVDLAFVEAYCKEQGIPFESARIQVTQYAKENHLNKQAAARECRYAFFRQLMERY 116 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I AH DDQ+ET+ MR R G+GL+G+ Y + W+ RP + ++D+ Sbjct: 117 KAQFIALAHHGDDQVETMMMRLARGT--VGIGLAGIQAKRPY-QDGWLIRPLIGYSKDDV 173 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 + Q +I + D SN D + R R+RR + + + ++ + D+ + + Sbjct: 174 LTACEQAHIPYVIDQSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEQYL 233 Query: 235 AMLIPKYLT 243 L + + Sbjct: 234 QALTKEQMN 242 >gi|224475652|ref|YP_002633258.1| putative PP-loop family protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420259|emb|CAL27073.1| putative PP-loop family protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 426 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 15/257 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + + H+ +AVS G DSM LL L + + K + + V+H +RE +K+E + Sbjct: 4 YTQGWTENDHLAIAVSTGVDSMVLLDVLTTEFA---HTYQKLTVLHVNHGIREASKEEEQ 60 Query: 72 YVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ D C + +I +V S+ + ARE RY H KTI A +++TAH Sbjct: 61 FIRDYCEKHQIPLAVHHLDLSELTAQGKSIQHTAREQRYDWFETHMKTIGANVLVTAHHQ 120 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET++ R + + + +T + RP L + IR + + + + Sbjct: 121 DDQLETIFYRIMTGRSTRSPLGMSVQETRP---GFKLVRPLLNVTKRVIRQYQVTNEVPY 177 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYL 242 ED SNTD+ + R +R + LK+K++ D + + A + Sbjct: 178 YEDASNTDNHYVRNDIRNRILPEIDENPQLDVSQLLKLKQWHDAQFQQLQDTADRFIQEN 237 Query: 243 TVHMRSIIAISQDILNI 259 T + I I ++ N Sbjct: 238 TETEQERINIDRNAFNQ 254 >gi|291528701|emb|CBK94287.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium rectale M104/1] Length = 501 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 111/294 (37%), Gaps = 31/294 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71 + + + +LVA+SGG+DS+ LL+ L+ + A+ V+H +R ++++ R Sbjct: 13 KMIKNHSTVLVALSGGADSVCLLLVLNEIKRQCTDELDFALEAVHVEHGIRGAESREDAR 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINAT------- 120 + SD+C RL I V S + GL AAR RY E A Sbjct: 73 FASDLCERLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEEEAGRYPCETAYAADQ 132 Query: 121 --------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 ++ AH +D ETV + R KG+ + + RP L Sbjct: 133 KQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAKGLAGMH---PVSVKNGVTYIRPLLSA 189 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-- 230 R I +L + ++ D +NTD + R ++R V + L ++ + ++ Sbjct: 190 TRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINESAGQLAV 249 Query: 231 -----NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 + ++ +I ++ L + R + G++ Sbjct: 250 MNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRL 303 >gi|153808575|ref|ZP_01961243.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185] gi|149128897|gb|EDM20114.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185] Length = 426 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 129/341 (37%), Gaps = 38/341 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE F + ILVA+SGG+DS+ LL LH+ A + LR E Sbjct: 10 IEKNHLFS----SDSKILVALSGGADSVALLRILHT-------AGYHCEAAHCNFHLRGE 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C + I + ++ + AARE RY E A Sbjct: 59 ESNRDESFVRQLCLKYNIRLHTTDFNTTQYAAEKHISIEMAARELRYNWFEEIKNKYRAD 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L R++I + Sbjct: 119 VIAVAHHQDDSIETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNRKEIIQY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + D +N +D + R ++R + + + +N+ Sbjct: 172 LQNIEQDYVTDSTNLEDEYTRNKIRLNLLPLMEEINPSVKNSLVETSNYLNDVA------ 225 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSA--AICGGQISLPGYR--SMERVMLFL-- 294 T++ + I I+ + + LL+ + I + G+ ++ + L Sbjct: 226 --TIYNKCIAKTKARIVTPEGIRISSLLKEAVPETILFETLHPLGFNSTQIKDIANSLHG 283 Query: 295 KSGKRGCVSIGRVVIDRRANFL-WITRAVRNLPTLILYPEE 334 +SGK+ RV+ DR L I +++P L EE Sbjct: 284 QSGKQFASKEWRVIKDREFLLLEEIRSEEKDIPPFQLIKEE 324 >gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773] Length = 435 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 20/300 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE ++ +++ + I+VAVSGG DS+ LL AL L + V++ LR Sbjct: 2 IEKIQQQLQAQDWEPTIIVAVSGGVDSVVLLHALRQHLPTA-----QLVVAHVNYHLRAE 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + ++ +V+++ + + + W + P TG+ A AR RY A I A Sbjct: 57 SDEDAAFVAELAQQYQAQFELCEWDDI-PTTGVEAQARTLRYRFFEALAAKYQTQTIAVA 115 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV ++ R L+GM + I RPFLR ++ + S+ Sbjct: 116 HHANDQAETVLLKLARGGQV--TQLAGMATSRAK-----IRRPFLRITKQTLMSYAQAHG 168 Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 ++W D +N D + R R+R V + + ++ ++ Sbjct: 169 LTWRHDQTNDDPDYTARNRLRHVVVPALQQINPQAVTHINAMAAQIQAQSDLITQTAADY 228 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 ++ + I S L L V G I + +V+ L + K+ S+ Sbjct: 229 VPL----LTSNWPAIPSRWLLPTLTVFLQQQG--IYRIKQAQLAQVVKLLHNDKKPTGSV 282 >gi|314937284|ref|ZP_07844626.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis C80] gi|313654580|gb|EFS18330.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis C80] Length = 431 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 19/261 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H+ VAVS G DSM LL +L+D S + + V+H LR+ + +E R++ C + Sbjct: 10 DHLAVAVSTGIDSMCLLY---KLLNDLSHSYQSITCLHVNHGLRDASVEEERFIKQFCKQ 66 Query: 80 LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I V S+ + + AR+ RY E INA +++TAH +DQLET++ Sbjct: 67 YQIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIF 126 Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + + +G+ + + +I RP + + DI+ + ++ + ED SN Sbjct: 127 YRVFTGRSTRNSLGMHECTE----RNHYFICRPLIETYKNDIKQYQTIHHVPFYEDESNH 182 Query: 196 DDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM-R 247 +++ R +R + LK+K + D+++++ ++ I +++ +H+ Sbjct: 183 HNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQRRISCFIEQHVNIHLNE 242 Query: 248 SIIAISQDILNIDSTLLFYLL 268 I +S+ N + +L Sbjct: 243 ERIQLSRASFNQLDEISKMIL 263 >gi|222099059|ref|YP_002533627.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359] gi|221571449|gb|ACM22261.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359] Length = 419 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 17/272 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DSM LL L + KI+ +DH +RE+++ + ++V D+C + Sbjct: 13 VLVAVSGGIDSMTLLYILKKLSP---LLKIEVLGAHLDHRIRESSERDRKFVEDICRQWN 69 Query: 82 IAHS--VVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + VV +G L ARE RY+ + + AK + AT I AH +D LETV Sbjct: 70 VPVETAVVDVPALWKGSGKTLEEVAREVRYSFLEKVAKKLGATKIALAHHKNDLLETVLH 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + RPFL +R +I + ++ I + D +N D Sbjct: 130 RLVRGTGPLGIACIPVKRE-------KYIRPFLVFKRSEIEDYAQKQKIPFVVDETNYDI 182 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ++ R +R V + L L ++ V ++ + + + + ++ + +D Sbjct: 183 KYTRNFIRHRVVPL-LKKLNPNVEDAVYRLVSISFMLREFVEETVQNFVKEKVHFYKDFA 241 Query: 258 NIDSTLLFYLLRVSAAICGGQISL--PGYRSM 287 + +L + P Y + Sbjct: 242 VFEEPKNQFLFLEVTRWVLKTLYGRTPDYEKL 273 >gi|15643345|ref|NP_228389.1| hypothetical protein TM0579 [Thermotoga maritima MSB8] gi|8928511|sp|Q9WZ48|TILS_THEMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4981097|gb|AAD35664.1|AE001733_1 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 414 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 17/278 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V Sbjct: 2 LEEGEHVLVAVSGGIDSMTLLYVLRKFSP---LLKIKITAAHLDHRIRESSRRDREFVER 58 Query: 76 VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +C + I L ARE RY + AK + A+ I AH +D Sbjct: 59 ICRQWNIPVETSEVDVPSLWKDSGKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LETV R R G+ + RPFL +R +I + + N+ + D Sbjct: 119 LETVVHRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYARKNNVPYVVD 171 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N + ++ R +R + + + L ++ V V + + + + + + + Sbjct: 172 ETNYNVKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTHLLRNFVERTVQDFVERNVY 230 Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSM 287 +D + ++ LF L V+ + +P Y + Sbjct: 231 FYKDYAVFVEPEDLFLFLEVTRWVLKEMYGRVPEYEKL 268 >gi|251779290|ref|ZP_04822210.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083605|gb|EES49495.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 468 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ILVA+SGG DS+ LL L + R I+ A ++H LR E A + +V Sbjct: 17 SGDKILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVIST 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I + V +K + A R RY E K I TAH +DQ Sbjct: 74 CKEMNIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R +G+G +C I RP L R+++ ++ ++N++ D Sbjct: 134 ETIIFRLMRGTGLEGLGGIKVCRE------DKIIRPILCLTRKEVEKYIKEKNLNPRIDK 187 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N + + R ++R L + F + VK N +++LI K R I Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKA 240 Query: 253 SQDILNIDSTLLFYLLRV 270 + ++ FY+L+ Sbjct: 241 YNEYCKKNTDSKFYILKK 258 >gi|188588191|ref|YP_001919610.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska E43] gi|188498472|gb|ACD51608.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska E43] Length = 468 Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ILVA+SGG DS+ LL L + R I+ A ++H LR E A + +V Sbjct: 17 SGDKILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVIST 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I + V +K + A R RY E K I TAH +DQ Sbjct: 74 CKEMNIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R +G+G +C I RP L R+++ ++ ++N++ D Sbjct: 134 ETIIFRLMRGTGLEGLGGIKVCRE------DKIIRPILCLTRKEVEKYIKEKNLNPRIDK 187 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N + + R ++R L + F + VK N +++LI K R I Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKA 240 Query: 253 SQDILNIDSTLLFYLLRV 270 + ++ FY+L+ Sbjct: 241 YNEYCKKNTDSKFYILKK 258 >gi|288800193|ref|ZP_06405652.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 299 str. F0039] gi|288333441|gb|EFC71920.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 299 str. F0039] Length = 444 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 35/287 (12%) Query: 1 MFLSPIESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 MFL IE F+ + L+ + LVA+SGG+DS+ LL+ L + A Sbjct: 1 MFLRKIEQ---FIEQKELMSKNQLYLVALSGGADSVALLLVLKRL-------GYNVEAAH 50 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISE 112 + LR E + + + D+C L I + + S + AAR RY Sbjct: 51 CNFHLRGEESDRDEDFCKDLCRELDIKLHLAHFDTQTNASLHGISIEMAARNLRYNYFEA 110 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K INA+ + AH DD ET+ + R +G+ T + N I RPFL Sbjct: 111 LLKDINASAVCVAHHKDDSAETLLLNLVRGTGIEGL-------TGIKSKNNRIVRPFLCV 163 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225 RR +I ++L Q+N S+ D SN + +R ++R + + + L + +D Sbjct: 164 RRNEIINYLEQQNQSFVTDSSNLVNDVQRNKIRLDVMPLLQTINPSVVEHLNQTGEYVED 223 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID---STLLFYLLR 269 +N + + + + + + + + L + S LL+Y+L+ Sbjct: 224 ATAILNATLEQMYDRVVLLKTEEQMIVDIERLEKEQSSSYLLWYILK 270 >gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271] gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271] Length = 475 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 20/323 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + ILVAVSGG DS+ L L + I + H +R + E V + Sbjct: 15 PSGSRILVAVSGGPDSIALWHILDRYARE-EKSDISLVISHIHHGVRRESDQEEEMVRKL 73 Query: 77 CSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + SV +K K + AARE RYA E LI TAH DQ Sbjct: 74 AGKFETELSVHRFKAKDYADKSKKSFQEAAREWRYARFQEDKDKYQCHLIATAHHLGDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R G+G +Y I RP L +++I ++ +S+ D Sbjct: 134 ETLLYRLLRGSGTSGLG-------GIYPSAGEIIRPLLTVSKQEILAYCEAEGLSFALDQ 186 Query: 193 SNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 SN + + R ++R + I AL + + + V L +Y Sbjct: 187 SNFEPVYVRNKIRLELLPILKKNYNSRIEEALGRTAELLRWDEEYIQTQVVALWSRYCLE 246 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I S++ + +L LLR++A G ++ ++ +M Sbjct: 247 EDGRRIVFSREAWQEPNAVLSRLLRLAAEKINGDPRGLEFKLIKTLMEEGWQQDWQQDLP 306 Query: 305 GRVVIDRRANFLWITRAVRNLPT 327 G V + +++ R +++ Sbjct: 307 GIKVCGMKEGLVFLRREIKSEEK 329 >gi|225573962|ref|ZP_03782607.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM 10507] gi|225038779|gb|EEG49025.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM 10507] Length = 468 Score = 212 bits (541), Expect = 6e-53, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 123/335 (36%), Gaps = 28/335 (8%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V F++ L I+ +SGG DSM LL L R + A+ V+H +R Sbjct: 10 EKVWQFIQKHHMLEAGDRIVAGISGGGDSMALLFLLLKF---RERCGYEVCAVHVNHGIR 66 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + A + V+ C+ + V V K A R R + + Sbjct: 67 GDEAFRDETLVTKYCADRNVDCEVFHCSVPEAVKKYGWSEEEAGRILRRQAYEQVLRQWK 126 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + AH +DQ ET+ R G GL G+ + + RPFL R +I Sbjct: 127 GNKVALAHHQNDQAETMLHNLSR-----GCGLRGIRGMLPVQNGM--IRPFLCIERREID 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV-----RDID---LHALYLKMKKFQDLRVKV 230 +L ++ I + D +N D++ R R+R+ V R+++ + + + Sbjct: 180 HYLKEKKIPYRTDSTNFSDQYIRNRIRKHVVEYLERNVNSKTVSHMAWTAGIAAQAEEYL 239 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 ++ +Y + + I IS D L S L Y + G +E++ Sbjct: 240 CGQGERILAQYGEL-LPGEIRISDDCLGEPSILRMYGFLQALEKVSGYRKDLSGEHLEQI 298 Query: 291 MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRN 324 + VS+ G R + I + V+ Sbjct: 299 SRLFQKETGKQVSLPGGTTAVRVYGGIIIRKTVKE 333 >gi|332520627|ref|ZP_08397089.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4] gi|332043980|gb|EGI80175.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4] Length = 438 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 129/311 (41%), Gaps = 38/311 (12%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75 + A IL+AVSGG DS+ L + + + + LRE + + +V + Sbjct: 16 LKKAKILIAVSGGLDSVVLTHLCSKL-------NLNIALAHCNFNLRENESDTDEAFVLE 68 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L I V + ++ + AAR RY + A+ + I+TAH DD Sbjct: 69 LAKTLDIEAFVQHFNTEAYAKAEKSSIQMAARTLRYNWFFDLARQLQFDYILTAHHADDN 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LETV + R +G+ T + + N I RP L+ RE + + +NI+W ED Sbjct: 129 LETVLINLTRGTGIEGL-------TGIPERNENIVRPLLKFSRESLEYYAKSKNIAWRED 181 Query: 192 PSNTDDRFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 SN ++ R ++R + L + + +D + V +V+ ++ + + Sbjct: 182 SSNASTKYLRNKLRHDVIPILKEINPTLLKNVETTLDNLKDTKAIVQESVSAVLKRAIIQ 241 Query: 245 HM-RSIIAISQDILNI--DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 H ++I Q+ N+ LF + ++ +E ++ +SGK+ Sbjct: 242 HDSEAVIYKIQEFKNLKQPKAYLFEVFKIYGFTDWNV--------LENLL-HAQSGKQIM 292 Query: 302 VSIGRVVIDRR 312 + ++ +R Sbjct: 293 SNTHTLLKNRE 303 >gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7] gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7] Length = 471 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 66/339 (19%), Positives = 137/339 (40%), Gaps = 19/339 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M+ +E+ + + +L+AVSGG DSM LL + + F + V+H Sbjct: 3 MYSEFLENCQENL-YWKPTDRLLLAVSGGVDSMVLLDLIQRLPKVVRPW---FGMVHVNH 58 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LRE + +E +++ D C I+ W + P G+ AAARE RYA + A Sbjct: 59 QLREASIEEEKFLVDYCKSANISFFFKRWPVKEQPTDGVEAAAREFRYAFFRNVLRDQQA 118 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T ++T H DDQ+ET+ MR R + ++G+ + + ++RP L ++ + Sbjct: 119 THLLTGHHGDDQIETILMRLVRGGQLE--SIAGIKEQRSF-YGSQLTRPLLPYSKKMLYH 175 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAM 236 + +R++ + ED +N + R R R + + + F + + + Sbjct: 176 YSQERSLVFFEDETNKSLDYTRNRYRHQIVPLLKKENTQVLTHFSEFSSDLQDVITVAKK 235 Query: 237 LIPKYLTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERV 290 I K + ++ L + + +++ + + S G + ++ Sbjct: 236 EIEKNTAILCTEKNPFCWELDIHLFLTFEPAMKRQVMQALFNKLFKNEASEFGRKHQRQI 295 Query: 291 MLFLKSGK-RGCVSIGRVVIDRR-ANFLWITRAVRNLPT 327 + +++ K + + I ++ + + L Sbjct: 296 IQLIENDKPNSQLDLPGNWIGKKVYQTFYFLKEQEQLAE 334 >gi|291530325|emb|CBK95910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium siraeum 70/3] Length = 306 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 26/314 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V + Sbjct: 4 KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 60 Query: 77 CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L I S K + + L AR RY +K LI TAHT D E Sbjct: 61 CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYEFFESISKD---RLIATAHTASDNCE 117 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G LSG+C N I RP L REDI + + + + D + Sbjct: 118 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 170 Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D + R ++R V + +L+ + + + + + + + + + Sbjct: 171 NLSDDYTRNKIRHKVVPLLKEINPSLFGAISRLSQSVSDDDRYLDKIASELMEKARTADV 230 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307 IL + R+ I P +++E + +++G +G ++ + V Sbjct: 231 KYDVGILRTADDCILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 287 Query: 308 VIDRRANFLWITRA 321 I ++ F+ R Sbjct: 288 QIRKKKLFVVTDRE 301 >gi|323340112|ref|ZP_08080377.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus ruminis ATCC 25644] gi|323092489|gb|EFZ35096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus ruminis ATCC 25644] Length = 450 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 18/299 (6%) Query: 14 RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + + PA+ +LVAVS G DSM LL L + VDH LRE +K E Sbjct: 16 KKMGVPANETVLVAVSTGCDSMTLLSLLQRLPEKMR---PTVQVAYVDHQLREQSKKETD 72 Query: 72 YVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ C + + W+ P+ G+ +ARE RY + + ++TAH +D Sbjct: 73 FITKYCQKNGLVLFKNVWEKEFHPKKGIEESAREFRYRFFEKIMEETGIEYLLTAHHSND 132 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET+ M++ R + L G+ + + RP L +E ++ + + I + E Sbjct: 133 QAETILMKAVRGGDLE--QLVGIKSARTFGTG-KLLRPLLHFSKETLKEYAERNQIKYFE 189 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIPKYLTVHM 246 D +N D R R+R V + ++L +++ + + ++ L + + Sbjct: 190 DETNALDDVLRNRLRHHVVPFLEKENRHFLTHVEELSLQLKDLLDYSDKKIVDDCLLLKV 249 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 ++ + L D + L+ G + E+ + L++ + S+ Sbjct: 250 EGGYSL-EKWLKQDESQKRLTLKHILKQAGNF----SLKKQEQCVKMLENDAKPQGSLA 303 >gi|298386289|ref|ZP_06995845.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14] gi|298260666|gb|EFI03534.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14] Length = 426 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 134/355 (37%), Gaps = 45/355 (12%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + IE F +L+A+SGG+DS+ LL LH+ + A + L Sbjct: 7 IRYIEKEHLFS----PNDKLLIALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + ++V +C + I + + ++ + + AARE RY + + Sbjct: 56 RGEESNRDEQFVRQLCQKYGIRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A +I AH DD +ET+ + R G+ + N I RP L RE+I Sbjct: 116 GAHVIAVAHHQDDSVETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L Q ++ D +N +D + R ++R + + ++L D+ V Sbjct: 169 IRYLQQIGQNFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSNHLNDVAVIY 228 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 N + + +T I A+ ++ LF L ++ + Sbjct: 229 NKVITEAKTRIITPEGIRINALLEEP--APEAFLFETL---------HPLGFNSAQIKDI 277 Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRA--VRNLPTLILYPEETTVWDGR 341 L +SGK+ RV+ DR L R LP ++ E D R Sbjct: 278 ANSLHGQSGKQFVSKEWRVIKDRNLLLLETIRPEDESTLPYQLIKEEREFTPDFR 332 >gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis] gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis] Length = 679 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 24/307 (7%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIK-FSAISVDHCLRET 65 R + L I + VSGG DS+ L + + S +S G + AI VDH LR Sbjct: 51 RMAMAGLKPQHRIAIGVSGGPDSVALCVLTAAWKSAGVAKSEGFVDGLLAIVVDHGLRPE 110 Query: 66 AKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTINATLI 122 +K+E + VS S + + + SW +P+ G L AR+ RY + ++ Sbjct: 111 SKEEAQVVSRRVSDMGVRCEIACCSWYRGRPKQGHLQEEARDMRYQKLHSICLQHQIGVL 170 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-----------DLNLWISRPFLR 171 + AH DDQ E +R R+ G+ I + + ++ ++RP L Sbjct: 171 LIAHHADDQAELFILRLSRNSGVLGLAGMAFTSQIFFSNAQPNDEGLKNESILLARPLLH 230 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLR 227 +ED+ W EDP+N + R R+R + ++ L + + R Sbjct: 231 FSKEDMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTFKSELQAVISACRKTR 290 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYR 285 V+ LI + +T+ + I +ILN + L++ A + Q P Sbjct: 291 AFVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLALVLQFISQRYKPVRG 350 Query: 286 SMERVML 292 S R++L Sbjct: 351 SALRLLL 357 >gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magnetotacticum MS-1] Length = 429 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 158/385 (41%), Gaps = 20/385 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS+ L + R + A++VDH LR + E V + Sbjct: 12 RLAVAVSGGADSLALALLAAQWARARGG---EVLALTVDHRLRPDSTAEAERVGEWLGGE 68 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 IAH +++W+ KP L AAAR ARY L+ E ++ AH DDQ ET+ +R Sbjct: 69 GIAHRILAWEGDKPAADLQAAARAARYRLLGEACAAEGILHLLVAHHQDDQAETLLLRLG 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ + + RP L R + +FL R W +DPSN ++ F Sbjct: 129 RGSGLDGLSAMAPERPTAWGR---LLRPLLVVPRARLEAFLRHRGQDWVQDPSNRNEAFA 185 Query: 201 RVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 RVR+RR D+ L + + V+ VA +++T+ + Sbjct: 186 RVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMVAEAAARHVTLDPAGYARLQPK 245 Query: 256 IL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 +L + + LL GG+ P +ER+ L +G ++ I Sbjct: 246 VLARLPEEVGLRLLARLLLCVGGEDVTPRLERLERLYTALTAGLETARTLAGCRIVPVGE 305 Query: 315 FLWITRA-VRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSGI 368 + I R R P + L P WDGR++ D+ L +GPQ K G Sbjct: 306 TVIICREPARMSPPVDLAPGTRIRWDGRFEAMVARDASPGLRLGGLGPQGRSKVQELMGG 365 Query: 369 PPIIAQRA--LSSMPSKEGGKPLLA 391 P+ A + ++P + +LA Sbjct: 366 KPLEPVPACVIPTLPGLYDERGILA 390 >gi|163750367|ref|ZP_02157607.1| cell cycle protein MesJ [Shewanella benthica KT99] gi|161329857|gb|EDQ00843.1| cell cycle protein MesJ [Shewanella benthica KT99] Length = 467 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 17/311 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A +++A SGG DS L + L R + ++ + V H L + A V + Sbjct: 27 PGAKLVLAYSGGVDSELLALGLSEFA--REHHEYRYLLVHVHHGLSDHADAWVAHCESRA 84 Query: 78 SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +A S+ P+ + A AR ARY + + ++TAH DDQLETV Sbjct: 85 EAYGLAISIKRVVVDTGPRKSVEAEARNARYDAMRSQMEP--GDALLTAHHLDDQLETVL 142 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R KG+ G ++ + + RP L RE I + + D SN+D Sbjct: 143 LALTRGLGPKGLAAMG--SMQVFGKDKQLIRPLLSISRELIEAKAKAVGLVHITDESNSD 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D+++R +R + L A + + + +I ++ + I+ Q Sbjct: 201 DKYDRNFLRLEIIPR-LKARWGAIATTASRSAFLCAQQQAVIDAEVSERLPIFISSRQGG 259 Query: 257 LNIDSTLL------FYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 ++D LL + L I + P + +V +L + + + +G + Sbjct: 260 DSLDLGLLGAQSSNWQSLLFRGFIEQLGFAPPSQSQLAQVLSQLLTARRDAKVELKLGDL 319 Query: 308 VIDRRANFLWI 318 +I R ++ Sbjct: 320 LIRRYQGHAFL 330 >gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4] gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4] Length = 467 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 124/290 (42%), Gaps = 16/290 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+AVSGG DSM L+ + + + F + V+H LR+ + +E +++S C+ Sbjct: 21 DRLLLAVSGGVDSMVLVDLIQRLPNAIRPW---FGVVHVNHQLRQASMEEEKFLSQYCAS 77 Query: 80 LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 RI W + Q G+ AAARE RYA E K AT ++T H DDQ+ET+ MR Sbjct: 78 NRIPFFFKRWPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDDQMETILMR 137 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + ++G+ + ++RP L +E + + +R++S+ ED SN Sbjct: 138 LVRGGQLE--SIAGIKKHRTF-YGKQLTRPLLDYSKETLYQYSQERSLSFYEDESNNSLE 194 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS----- 253 + R R R + + + F D + + + + + Sbjct: 195 YTRNRYRHQIIPLLKKENTQVLTHFADFSSDLQDVITVAKQEIEKQAANVCFQKGPFCWE 254 Query: 254 ---QDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKR 299 L + + ++++ I ++S G + +++ ++ K Sbjct: 255 LDVPLFLTFEPAMKRQVMQILFNKIFHKEVSKVGRKHQVQIIDLIEKDKP 304 >gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1] gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1] Length = 419 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 145/381 (38%), Gaps = 35/381 (9%) Query: 1 MFLSPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M LS +E R R + + VAVSGG DSMGLL + G +AI +D Sbjct: 1 MTLSAVEKFRAAARRDGWLGQPLAVAVSGGGDSMGLLWLCLA------SGLRPCAAIHLD 54 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKT 116 H LR ++ DE R+V + C RL + + + A R RYA + E A++ Sbjct: 55 HGLRPSSADERRFVEETCGRLGLPFFWKRIDAASRRLQGESVEVACRRERYAFLREAAQS 114 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A+++ AHT DDQ ETV M R G+ I +W RP L RR++ Sbjct: 115 AGASVVALAHTADDQAETVLMNICRGCGLWGLA------GIPRRRGMW-VRPVLDFRRDE 167 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRV 228 +R L +W ED SN+D R+ R RVR R V L ++ + R Sbjct: 168 LRDLLKDAGWTWVEDESNSDRRYTRNRVRADLLPELERQVGAGAAVHLAALAQEAWEARS 227 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSM 287 N + L+ + +S L + L+ LLR +A GG P R M Sbjct: 228 DENVLMTSLLAGASRLAPEPFQKVSLKRLRLLSDGLIARLLRHLSAQNGGAA--PSRRRM 285 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 + + ++ R R + + E W G Sbjct: 286 DDLTGLVRRSGRWTFQWDRHHDLTARDGHLFWGPSSERVIQTVEVSERADWGGW------ 339 Query: 348 SDSLIQIGPQSYRKADVPSGI 368 D GP +VP G Sbjct: 340 -DVSFVSGPMGPWDLNVPVGR 359 >gi|94676863|ref|YP_588575.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220013|gb|ABF14172.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 486 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 19/328 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +++A SGG DS LL L S+ + A+ ++H + D + Sbjct: 23 SKLVLAFSGGLDSTVLLDILTSLRDTNNSKITALFSLRAVHINHGFNSNSDDWQIHCEQQ 82 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + + + + + G+ AAAR ARY + + K +++TA DDQ+ET+ Sbjct: 83 CRQRAVPYHFIKVRLKTKNNGVEAAARYARYQALYDVLKP--GEILLTAQHQDDQVETLL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R GLSGM + + + RP L C R + + N++W ED SN + Sbjct: 141 LAIKRGSGP--TGLSGMATNANWG-DYRLIRPLLTCSRMQLNRYASYFNLNWIEDDSNKN 197 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255 DRF+R +R + I L + + K ++ L+ + L + +I Sbjct: 198 DRFDRNFLRLHII-IQLQKRWPQFSKSAIRSAQLCAEQENLLDELLKDTLDMLIMPDGSL 256 Query: 256 ----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308 +L + LLR A G +P + + + + +G + Sbjct: 257 QFTPLLTMSDIKRNALLRRWLASQGAW--MPSRQQLTHIWKNVVLSSRAAMPQFILGDKL 314 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT 336 + R N L++ ++ + Sbjct: 315 LRRFRNKLYLLSKKISVEPTVKILLWQI 342 >gi|70727501|ref|YP_254417.1| hypothetical protein SH2502 [Staphylococcus haemolyticus JCSC1435] gi|68448227|dbj|BAE05811.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 431 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 19/264 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI++AVS G DSM L H++LS S + + + V+H LRE + E ++ C + Sbjct: 14 HIVIAVSTGVDSMSLF---HNLLSQSSRTYKQLTCLHVNHGLREASHKEEAFIEAFCKQY 70 Query: 81 RIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V + A AR+ RY E K ++A +++TAH DDQLET++ Sbjct: 71 EITCYVKHLNLTDVVAQGKSIQADARQLRYEWFDEMMKRLDADVLLTAHHLDDQLETIFY 130 Query: 138 RSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + + +G+ D + I RP L +EDIR + + + + ED SN+D Sbjct: 131 RLFTGRSTRSTLGI----DVQSIRNHYTICRPLLEVSKEDIRDYQHKYQVPYYEDSSNSD 186 Query: 197 DRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVKVNN--AVAMLIPKYLTVHMRS 248 +++ R +R + ++ DL + + LK+K++ D++++ + A + + L + Sbjct: 187 NKYVRNDIRNRLLPAINQNADLDSTHLLKLKRWHDIQLQESRKKAQSFIENDCLINKNGT 246 Query: 249 IIAISQDILNIDSTLLFYLLRVSA 272 I S++ N + +L Sbjct: 247 QIQFSRNAFNQLDDIAKMILLDQL 270 >gi|319787808|ref|YP_004147283.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317466320|gb|ADV28052.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 443 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 136/389 (34%), Gaps = 30/389 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L ++V SGG DS LL AL + + R+ G A+ V H L A D + Sbjct: 9 FDALPATGALVVGFSGGLDSSALLHALAAEPAIRARG---LRAVHVHHGLHADAGDWAAH 65 Query: 73 VSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + V+ + + GL AAREARYA + +++TAH DDQ Sbjct: 66 CLRQAAAWGVPLQVIEVQVPADAGLGLEGAAREARYAALLSTL--GPGEVLVTAHHLDDQ 123 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R +G+G + W RP L R + ++W +D Sbjct: 124 AETFLLRALRASGPEGLGAM---RPLRRFGGGWHWRPLLGLSRAVLEDHARAHGLAWVDD 180 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 PSN +R +R V + L + ++ L+ + + Sbjct: 181 PSNALADADRNFLRLEVLPL-LQRRWPHAAAALARSAGLSAEADALLQEDEEALLHQHAG 239 Query: 252 IS------QDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVS 303 + +L++ LLR+ G LP +E +L + C + Sbjct: 240 EHGHTLPVELLLSLTPARRARLLRLWVRKL-GLPPLPARGIDRIEHELLQARPDAEACFA 298 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363 + R L + LP + + WDG + + + Sbjct: 299 WSGARVLRWRGLLHADQERPPLPA-----DWSATWDGHAPLELPGGGSLCFVDADAKDQP 353 Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392 + + RA ++GG+ + P Sbjct: 354 AATAFDAPLQVRA------RQGGERIRLP 376 >gi|291557138|emb|CBL34255.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium siraeum V10Sc8a] Length = 306 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 26/314 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ++ AVSGG+DS+ LL L+S+ + F +A V+H LR E + + R+V + Sbjct: 4 KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 60 Query: 77 CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C L I S K + + L AR RY +K LI TAHT D E Sbjct: 61 CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCE 117 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R G LSG+C N I RP L REDI + + + + D + Sbjct: 118 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 170 Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D + R ++R V + +L+ + + + + + + + + Sbjct: 171 NLSDDYTRNKIRHKVVPLLKEINPSLFSAISRLSQSVSDDDRYLDKIASELMEKTRTADD 230 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307 IL + R+ I P +++E + +++G +G ++ + V Sbjct: 231 KYDVGILRTADDCILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 287 Query: 308 VIDRRANFLWITRA 321 I ++ F+ R Sbjct: 288 QIRKKKLFVVTDRE 301 >gi|187933472|ref|YP_001884417.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund 17B] gi|187721625|gb|ACD22846.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund 17B] Length = 468 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 21/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 IL+A+SGG DS+ LL L + R I+ A ++H LR + A + +V + Sbjct: 17 SGDKILIALSGGPDSLCLLNMLKEL---REELDIEIGAAHLNHLLRGDDAFKDEEFVINT 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I V +K + A R RY E K I TAH +DQ Sbjct: 74 CKEMNIPCYVKRVDINKYSKEHRLSSELAGRNVRYDFFDEILKKEGFNKIATAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R +G+G +Y N I RP L R ++ ++ ++ ++ D Sbjct: 134 ETIIFRMMRGTGLEGLG-----GIKVYREN-KIIRPILCLTRTEVEKYIEEKKLNPRIDK 187 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N + + R ++R L + + F + VK N +++LI K + R I Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQENFNEDIVKTLNRMSLLIQKDNALIERLCIKA 240 Query: 253 SQDILNIDSTLLFYLLRV 270 + D+ F++L+ Sbjct: 241 YNEYCKKDNDSKFFILKK 258 >gi|160933737|ref|ZP_02081125.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753] gi|156867614|gb|EDO60986.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753] Length = 320 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 136/336 (40%), Gaps = 25/336 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M ++++ + + L + ++ VSGG+DSM LL L S + + ++K +A V+H Sbjct: 1 MITKVLKTIEAY-QMLSPDSAVVAGVSGGADSMALLHVLQS--RRKDWPELKVTAAHVNH 57 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 CLR A + +V C R I V V + +K + GL A R RY A Sbjct: 58 CLRGAEADRDEEHVRRYCQREGIPLEVLKIDVREEAAKRKLGLEACGRAVRYEFFRRLAG 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I TAHT D ETV + R G GL G+C N I RP + C R Sbjct: 118 ENG--VIATAHTLSDLAETVLLHLTR-----GTGLKGLCGIPPVREN--IVRPLIDCSRR 168 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + I + D +N + R+ R +VR V L AL F++ ++ ++ Sbjct: 169 EIEDYCREHKIPYVTDSTNLEARYSRNKVRLQV----LPALKEINPAFEEAVGRMAQSLR 224 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMERVML 292 + + + ++L +R+ A S P R +E + Sbjct: 225 EDDGCLCEEARELLGRAALEKGGWSCSVLSRGRKPVRIRAIRLLQGASRPEARHLEEIDR 284 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW-ITRAVRNLPT 327 + +G+ G G + L + R +P Sbjct: 285 IILAGQGGVSVPGGLDFHANRGVLRTVPHKKRKIPQ 320 >gi|29347003|ref|NP_810506.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482] gi|61216643|sp|Q8A7D1|TILS_BACTN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29338901|gb|AAO76700.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482] Length = 426 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 130/355 (36%), Gaps = 45/355 (12%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + IE F+ +LVA+SGG+DS+ LL LH+ + A + L Sbjct: 7 IRYIEKEHLFL----PDDKLLVALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + R+V +C + I + + ++ + + AARE RY + + Sbjct: 56 RGEESNRDERFVRQLCQKYGIRLHITDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A +I AH DD +ET+ R G+ + N I RP L RE+I Sbjct: 116 GAHVIAVAHHQDDSVETMLFNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L Q + D +N +D + R ++R + + ++L D+ Sbjct: 169 IRYLQQIGQDFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSNHLNDVATIY 228 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 N + + +T I A+ + LF L ++ + Sbjct: 229 NKVIDEAKTRIITPEGIRIDALLDEP--APEAFLFETL---------HPLGFNSAQIKDI 277 Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRA--VRNLPTLILYPEETTVWDGR 341 L + GK+ RV+ DR L R LP ++ E D R Sbjct: 278 ANSLHGQPGKQFVSKEWRVIKDRNLLLLETIRPEDESTLPYQLIKEEREFTPDFR 332 >gi|157962688|ref|YP_001502722.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345] gi|157847688|gb|ABV88187.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345] Length = 469 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 26/315 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++A SGG DS L L ++ I+ + V H L A ++ + Sbjct: 33 RKLVLAYSGGVDSEILAHGLSQFA--KANLDIECLLVHVHHGLSLNADSWAKHCASQAQY 90 Query: 80 LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ + P+ + A AR RY + ++ ++MTAH DDQLETV + Sbjct: 91 YELGCAIKRVEVKLAPRVSVEAQARTVRYQAL--LSELEQGDVLMTAHHQDDQLETVLLA 148 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG+ G ++ W+ RP L + +I + Q NIS ED SN DD+ Sbjct: 149 LKRGLGPKGLAAMG--KVQCFEQQHWLIRPLLDFSKVEIEVYAKQHNISHIEDESNFDDK 206 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----------KYLTVHMRS 248 ++R +R V + L + + A+ L H Sbjct: 207 YDRNFLRLEV----IPTLKQRWSAIAATASRSAEICALQQSVIDEETAVRLPQLQHHKAG 262 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 + D L S LL G P E + +L K+ + + Sbjct: 263 ECTLDLDKLATYSKAWQSLLLRGHMESLGFA-PPSKVQGEEILTQLLEAKADASVEIRLA 321 Query: 306 RVVIDR-RANFLWIT 319 VVI R + + +++ Sbjct: 322 DVVIRRFKRDGYFLS 336 >gi|148269484|ref|YP_001243944.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1] gi|147735028|gb|ABQ46368.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1] Length = 419 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 16/259 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V +C + Sbjct: 12 HVLVAVSGGIDSMTLLYVLKKFSP---LLKIKITAAHLDHRIRESSRRDREFVERICRQW 68 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + L ARE RY + AK + AT I AH +D LETV Sbjct: 69 NVPVETSEVDVPSLWKDSGKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLETVV 128 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G+ + RPFL +R +I + ++ + + D +N D Sbjct: 129 HRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVDETNYD 181 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255 ++ R +R + + + L ++ V V + + + + + + +D Sbjct: 182 VKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTLLLRNFVERTVQDFVERNVYFYKDY 240 Query: 256 ILNIDSTLLFYLLRVSAAI 274 + + F+ L V+ + Sbjct: 241 AVFAEPEDPFFFLEVTRWV 259 >gi|281411798|ref|YP_003345877.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10] gi|281372901|gb|ADA66463.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10] Length = 431 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 16/259 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H+LVAVSGG DSM LL L KIK +A +DH +RE+++ + +V +C + Sbjct: 24 HVLVAVSGGIDSMTLLYVLKKFSP---LLKIKITAAHLDHRIRESSRRDREFVERICRQW 80 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + L ARE RY + AK + AT I AH +D LETV Sbjct: 81 NVPVETSEVDVPSLWKDSGKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLETVV 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G+ + RPFL +R +I + ++ + + D +N D Sbjct: 141 HRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVDETNYD 193 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255 ++ R +R + + + L ++ V V + + + + + + +D Sbjct: 194 VKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTLLLRNFVERTVQDFVERNVYFYKDY 252 Query: 256 ILNIDSTLLFYLLRVSAAI 274 + + F+ L V+ + Sbjct: 253 AVFAEPEDPFFFLEVTRWV 271 >gi|194467678|ref|ZP_03073665.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23] gi|194454714|gb|EDX43611.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23] Length = 464 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 17/308 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 8 FERHLERSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---NRPQIIVAHMNHQ 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C R + +V W ++ PQTG+ AAR+ARY E K A Sbjct: 61 LRKQSQLEERFIRQYCKRNDLKLAVAHWPQDLHPQTGVENAARQARYHFFREVMKDNQAR 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 121 ILITAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237 LQ ++ W ED +N D +R R R + + + ++ ++ + +A Sbjct: 178 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEKENPQLLSHLENYHQQLTDLLAWRDQA 237 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + L + + L + ++ +LR G + + ++ ++ L++ Sbjct: 238 VADQLAACVDQQGRMILARLAKNKEIIRKEILRQWFNQQG--MYDIKDQQLDELLQSLEN 295 Query: 297 GKRGCVSI 304 K+ +I Sbjct: 296 KKKPQQTI 303 >gi|167624879|ref|YP_001675173.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4] gi|167354901|gb|ABZ77514.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4] Length = 476 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 19/312 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +++A SGG DS L L + + + V H L A + Sbjct: 38 PKPKLVLAYSGGVDSEILAHGLAQFA--KVSPHFECLLVHVHHGLSANADTWAEHCLTQA 95 Query: 78 SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V + P+ + A AR RY + ++ N ++MTAH DDQLETV Sbjct: 96 KHYDLDCTVKRVEVKLAPRLSVEAQARSVRYEAL--LSELSNNDILMTAHHQDDQLETVL 153 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R KG LS M ++ WI RP L C +++I ++ + I+ +D SN D Sbjct: 154 LALKRGLGPKG--LSAMGKVQRFNQQHWIIRPLLDCSKDEIEAYAKRYEITHIQDESNFD 211 Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDL----RVKVNNAVAMLIPKYLTVHMRSI 249 D+++R +R V ++ + +L + ++ +A+ +P Sbjct: 212 DKYDRNFLRLDVIPKLKQRWPSIAATTSRSAELCALQQSVLDEEIALKLPNIQLRKGNDW 271 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGR 306 + + + S LLR G + P E+++ L K+ + + Sbjct: 272 VLDLERLAQYSSAWQSLLLRGHMDALG--FAPPSKVQGEQILAQLLDAKADANVEIRLTD 329 Query: 307 VVIDRRANFLWI 318 V+I R + + Sbjct: 330 VIIKRFKSEGYF 341 >gi|254468050|ref|ZP_05081456.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13] gi|207086860|gb|EDZ64143.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13] Length = 441 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 134/337 (39%), Gaps = 26/337 (7%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F + L H+LV VSGG DS+ L L + RS + I VDH L +K Sbjct: 12 FLKQKLKKNCHLLVGVSGGIDSVVLGHTLSQL---RSLHPFDLTFIYVDHQLHPESKQWA 68 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + +L I + + + G AAR+ RY + +++ A D Sbjct: 69 NTVKQLAKKLSIEYICEKVTIDQDLKLGTEGAARKHRYQAF----QKHQKDILVLAQHED 124 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQLET+ ++ R KG LS M + Y L I RP L + I + + + + Sbjct: 125 DQLETLLLQLARGAGSKG--LSCMPE---YHEKLKIWRPLLGVSKNLIYRYQQEHKLKFI 179 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED SN D++++R +R V + + + F + +A + Sbjct: 180 EDSSNKDNKYDRNYLRNKVIPL----IKKRFPHFATTSGRSVKHIADAYNYQNLMSAELY 235 Query: 250 IAISQDILNIDSTLLFYLLRVS------AAICGGQISLPGYRSMERVMLFLKS-GKRGCV 302 + +D ++ L L + Q+ +P + + +++ +K C+ Sbjct: 236 ENVLEDNNQLNGLKLKKLSDYDMGNVIRFWLNEHQVLMPSIKVLGQIISQIKKIDLESCI 295 Query: 303 S--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + + + I N L++ + N +L+ ++ +V Sbjct: 296 NIKVDGMSIRSYNNSLFLITNLENSFNPVLWKDQNSV 332 >gi|50086047|ref|YP_047557.1| cell cycle protein [Acinetobacter sp. ADP1] gi|61216503|sp|Q6F880|TILS_ACIAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49532023|emb|CAG69735.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ADP1] Length = 459 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 158/389 (40%), Gaps = 33/389 (8%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 R +++ +PA L+ SGG DSM LL + + + AI +DH L+ +++ Sbjct: 19 RLLIQAQQFPADTVFLIGCSGGMDSMLLLHLMSELFPHK------VRAIYIDHQLQSSSR 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V + + I ++ L AREARYA H K+ +++ AH Sbjct: 73 AWGVFVQNFAQQSHIPFTIQPVIVD--TGNLENQAREARYAAFESHLKSN--EVLVLAHH 128 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ ETV +R KG+G I N+ RP L R+ I ++ I Sbjct: 129 QQDQTETVLLRLLSGSGVKGLGAM---KEIEQKKNICCWRPMLSVSRQQIEHWVEHLKIP 185 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + +D +N D ++R R V + L + KM++ + ++ + L + Sbjct: 186 YIQDLTNFDTTYDRAWCRETVWPV-LQKRFPKMQEAISRTSILMQDADEILHEVLQQDLN 244 Query: 248 SIIAISQDILNIDSTLLFYLLR----VSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300 + + L++ L R +S + G I P + +ERV ++ K+ + Sbjct: 245 QCGDL--NHLDLSRLQQLSLARQRQLLSFWMKGKAIYRPAFEMVERVQQEVICAKADAKA 302 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 + R N L+ + L ++ +T + D+ +Q+ ++ Sbjct: 303 ALHWNHHYYVRYQNILYRVEKNKYLQKDLVSNVVST-------IELQMDASLQLASGVFQ 355 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPL 389 + G+ P + ++ L +P ++GG+ + Sbjct: 356 IQPMQMGLSPQLFEQPLQLLP-RQGGEKI 383 >gi|225445226|ref|XP_002280934.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 687 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 30/316 (9%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIA--------LHSVLSDRSFGKIKFSAISVDHC 61 R + L I + VSGG DSM L I L++ R F AI VDH Sbjct: 72 RMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHG 130 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTIN 118 LR +KDE V S + I + W + KP+ G L AARE RY + Sbjct: 131 LRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQ 190 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----------DTILYDLNLWISR 167 +++ AH DDQ+E +R RD G+ D + ++ + R Sbjct: 191 IGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTNYFDEASDNYSILLVR 250 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKF 223 P L +ED+ N W EDP+N + F R R+R +R++ + L + Sbjct: 251 PLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISAC 310 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICGGQIS 280 + R V+ + LI + ++V + I +IL+ I+ L + + + Sbjct: 311 RKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLSKFIALVLQFISQRHR 370 Query: 281 LPGYRSMERVMLFLKS 296 + + ++ ++++ Sbjct: 371 PVRGSTSKLLLDYIRT 386 >gi|32491148|ref|NP_871402.1| hypothetical protein WGLp399 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|61217353|sp|Q8D2F5|TILS_WIGBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25166355|dbj|BAC24545.1| mesJ [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 400 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 69/324 (21%), Positives = 146/324 (45%), Gaps = 22/324 (6%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIAL----HSVLSDRSFGK--IKFSAISVDHCL 62 ++ F + + Y ++A SGG DS LL + + ++ +F K KF A+ ++H + Sbjct: 2 LKKFFKEISYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNI 61 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +K + D C + ++ ++ S G+ ++AR RY + ++ Sbjct: 62 CKESKYWSNHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKALFSDLNPE--EVL 119 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH DDQ+ET+ + +R +G +SGM +D ++ I RP L C++EDI+ + + Sbjct: 120 ITAHHQDDQIETILLSLKRGSGPRG--ISGMQSIKKFDSHI-IKRPLLHCKKEDIKLYAI 176 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + N++W +D SN + +F+R +R + + L + + K+ L+ + L Sbjct: 177 KHNLNWIDDKSNLNIKFDRNFLRSEIIPL-LKKRWPNIGNTISRSAKLCFDQEKLLNELL 235 Query: 243 TVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFL 294 + S++ + ++ + F +LR + +P ++ + + Sbjct: 236 KDTLNSLVEKDKSLKFIELFKMSEIKRFAILRKWFCL--NNFKMPSLSQLKHIWKNVIIS 293 Query: 295 KSGKRGCVSIGRVVIDRRANFLWI 318 K + + I +I R L+ Sbjct: 294 KKDSKAEIKINNNIIKRFKKNLYF 317 >gi|303228874|ref|ZP_07315687.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a] gi|302516494|gb|EFL58423.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a] Length = 320 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 18/314 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + A ILVA SGG DSM LL L V R + ++DH +R + E++ V+ Sbjct: 12 FPHEARILVACSGGPDSMVLLHVLQYVKVHRK-ARWTIGVTTMDHSIRRESLSELQMVAS 70 Query: 76 VCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C++ + + + + L R RY +E A + I+TAH DDQ Sbjct: 71 YCNKNNLPFWGVKKDIPTIAGERKESLETVGRCERYKWFNELAAREHYDYIVTAHHKDDQ 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ R KG ++GM I +D + I RP L +++I + ++I +C D Sbjct: 131 GETILAHILRGSGIKG--ITGMS-VISHDYTVPIVRPLLSVTKDEILEYARLQDIEYCVD 187 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN D ++ R R+R V + L D ++ + + R I Sbjct: 188 ASNEDVKYNRNRIRHEV----IPTLQTINPNVVDALCRLGDIAQVDEAYLNGESQRLFIQ 243 Query: 252 ISQDILNID--STLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIG 305 + Q + N S L ++ Q+ +P E++ +++G+ +I Sbjct: 244 LVQSVDNGFQVSRRCMRALPLAMQRRLWQLMIPSVSLSLAHQEQLAHIIRTGEAKTFTIQ 303 Query: 306 RVVIDRRANFLWIT 319 +V I+ + + + + Sbjct: 304 KVTINAQCDTILVY 317 >gi|302187915|ref|ZP_07264588.1| PP-loop [Pseudomonas syringae pv. syringae 642] Length = 445 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P + AAR+ARY+ S+ +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPGASIEQAARKARYSAFSQRLAE--GEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R + + + ++W +DPSN D +F R Sbjct: 145 GVRG--LAAMPDRRVLGRG-HLLRPLLDVSRMQLEDYARRHGLNWIDDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L L + A S + + Sbjct: 202 LRSQVLPLLTSRWPQASASLARTARHLGEAQQLLDEIALQDIANAQAATSFGWVGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + + + R Sbjct: 262 LGPIAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLAEGTLHRA 320 Query: 313 ANFLWITRA 321 FLW A Sbjct: 321 QGFLWWVPA 329 >gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera] Length = 707 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 30/316 (9%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIA--------LHSVLSDRSFGKIKFSAISVDHC 61 R + L I + VSGG DSM L I L++ R F AI VDH Sbjct: 72 RMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHG 130 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTIN 118 LR +KDE V S + I + W + KP+ G L AARE RY + Sbjct: 131 LRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQ 190 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----------DTILYDLNLWISR 167 +++ AH DDQ+E +R RD G+ D + ++ + R Sbjct: 191 IGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTNYFDEASDNYSILLVR 250 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKF 223 P L +ED+ N W EDP+N + F R R+R +R++ + L + Sbjct: 251 PLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISAC 310 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICGGQIS 280 + R V+ + LI + ++V + I +IL+ I+ L + + + Sbjct: 311 RKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLSKFIALVLQFISQRHR 370 Query: 281 LPGYRSMERVMLFLKS 296 + + ++ ++++ Sbjct: 371 PVRGSTSKLLLDYIRT 386 >gi|255013262|ref|ZP_05285388.1| putative cell-cycle protein [Bacteroides sp. 2_1_7] Length = 438 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R ++ R L +LV +SGG+DS+ LL L + A+ + L Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + + + L + + + + + AARE RYA E + + Sbjct: 55 RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AH DD +ETV M R +GM + + N +I RP L REDI Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + ++ D +N D + R +R V + L + + R + + A Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294 I Y+ R + +S D L+I + + F + G L + Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336 + GK S R++ DR ++LWIT + T +L PE+ Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324 >gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7] gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7] Length = 443 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 21/265 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + E + +L +L+A+SGG DS+ L L + + + Sbjct: 1 MLAAFQEHLHLHFSNL-KENRLLIAISGGLDSVVLTHLLFN-------AGYDITLAHCNF 52 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR+ + + ++V ++ R +I V ++ S AARE RY ++ K Sbjct: 53 NLRDSESDQDEQFVRELADRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCK 112 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 N I+TAH DDQ+ET ++ R KG+ + LN + RP L RE Sbjct: 113 DHNYDFILTAHHLDDQIETFFINLNRGAGLKGL-------QGIPQLNGNVIRPLLPFSRE 165 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 I + + + W ED SN ++++R ++R + + AL F + + Sbjct: 166 QIMEYAMNSQVLWREDSSNRSNKYQRNQLRNQILPLLHKALPQLKTHFAQSLDYLKGSQD 225 Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260 L+ + S+I + +NI+ Sbjct: 226 -LVDDAVARFRESVIKTTTTGININ 249 >gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans AK-01] gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans AK-01] Length = 480 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 69/358 (19%), Positives = 129/358 (36%), Gaps = 31/358 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 S +E VR + L A +L VSGG DS L+ L + + ++ V+H Sbjct: 12 SFLEKVRQALYEQGLLFRGARVLAGVSGGPDSTALVHVLSRLQKE---FALQLGVAHVNH 68 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS--VVSWKNSKPQTG--LMAAAREARYALISEHAK 115 CLR E + + +V ++ + L + V ++ ++G L AAREAR A S + Sbjct: 69 CLRGEESDRDALFVQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQ 128 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD E + + R G+ + + +N RP + R+ Sbjct: 129 EHGYDFVALGHHADDNAEWMLISLIRGAGAGGL-------SGIPPVNGKTVRPLFKLTRK 181 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I + + + W +D +N D R ++R + I + L ++ Sbjct: 182 EILKYCRENALKWVQDSTNQDQSILRNQIRLHLLPILESQYNPAIVPGLNRLSNILREEH 241 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + ++ + + + ++ L ++ + A G + + Sbjct: 242 LWMDGMARDFLEDHAKPIKNGLELSLVHLVKQPLALQRRIVLQAMAEVRGNTRKTSWTHV 301 Query: 288 ERVMLFLKSGKRG-CVSI-GRVVIDRRANFL-WITRAVRNLPTLILYP--EETTVWDG 340 V+ GK G V + + R L +I + P E V DG Sbjct: 302 HDVLKLACQGKSGSQVHLPDGLEARRVQRKLEFILHDSPDWARTPSQPAKEWRVVLDG 359 >gi|310779129|ref|YP_003967462.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926] gi|309748452|gb|ADO83114.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926] Length = 446 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 29/319 (9%) Query: 3 LSPIESVRFFV-RSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + IE VR FV R+ + + IL+ SGG DS+ L AL + + K++ + ++ Sbjct: 1 MEVIERVREFVLRNDLVGSGEKILLGFSGGPDSVFLFEALLDLKEE---FKLEIAIAHIN 57 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114 H LR + + + + + + I + V K G A R RY + + Sbjct: 58 HLLRGDESDGDEEFCRQLAEKNGIKYYVKKADIKKYSRQHGIGEEEAGRSIRYDFFYKIS 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K A + AH DDQ+ET R R + +G+ + I +++I RP + Sbjct: 118 KEWGADKVALAHNKDDQVETFLFRMMRGTSLEGL------EGIPVRRDIFI-RPLSEVYK 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKV 230 +DI +L I + D SN ++ + R +R F+ D K+ + + Sbjct: 171 KDILGYLDSNKIEYRIDSSNLENTYTRNSIRLDLIPFIEDKYNANFKEKIFSLIEEIKEA 230 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 N + + I Y+ + + + ++ L+ +E + Sbjct: 231 NKLLKVNISDYIENEKLDLKKLEELHEYQKRKVINEFLKKYKIEI-------TREKLENI 283 Query: 291 MLFLKSGKRGCVSIGRVVI 309 + LK G +S+G+ ++ Sbjct: 284 LDILKKGGSKKLSLGKNIV 302 >gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator MP104C] gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 470 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 38/387 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R L +LV VSGG DS+ LL L+ + R+ I + ++H LR A+ + RY Sbjct: 15 RMLEPGMGVLVGVSGGPDSVALLDVLYGL---RAVLGISITVAHLNHRLRGAEAEADARY 71 Query: 73 VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + + + V V + + AARE RY + A+ A + H Sbjct: 72 VRKLAEKFGLPCIVEECDVPTFRKAERLSIQTAARELRYEFFARAARETGARRVALGHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ R G+ + + RP L RR +I ++ R + Sbjct: 132 DDQAETILHHFLRGTGPAGLA-------GIAPVRGLFIRPLLGIRRREIEAYCRARGLDP 184 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 DPSN D + R R+R + + L + + ++ N+ + Sbjct: 185 RLDPSNLDPVYTRNRLRAELLPLLETEYNPNLVTALLRLGEICRAENDYMEEQTETIFRR 244 Query: 245 HMR---SIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + D + + + ++R + + G + +ERV+ ++ Sbjct: 245 SAAPTDGCVRLDADRVAALPPAIGRRMIRRAWSELAGDPGALDFDHVERVLELARAAA-- 302 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP-TLILYPEETTVW------DGRYQFQNLSDSLIQ 353 G +D + + R L +L P E W GR + + LI Sbjct: 303 ----GGKRLDLPR-GIRVERQFAALVFSLGPDPAEYGAWHYVLVVPGRTELPEVG-LLIT 356 Query: 354 IGPQSYRKADVPSGIPPIIAQRALSSM 380 + +A P + P A L ++ Sbjct: 357 TDIRPAEQAWRPETLQPGQAAVDLDTL 383 >gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136] gi|189431712|gb|EDV00697.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136] Length = 426 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 32/331 (9%) Query: 1 MFLSP----IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 MF I F RS ILVA+SGG+DS+ LL L A Sbjct: 1 MFRQKVIQYINEKHLFHRS----DKILVALSGGADSVALLRVLL-------LEGYNCVAA 49 Query: 57 SVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111 + LR E + + +V ++C L + V+ + S+ + + AARE RY Sbjct: 50 HCNFHLRGEESDRDEEFVQNLCRGLDVPLQVIHFDTNGYASRKRISIEMAARELRYEWFE 109 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + + A++I AH DD +ET + R G+ + +N + RP L Sbjct: 110 QVRLQVGASVIAVAHHRDDSVETFLLNLVRGTGINGL-------KGIAAVNGKVVRPLLD 162 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R+DI +FL + D +N +D + R ++R V + + + +++ Sbjct: 163 VSRDDILAFLADLKQDYVTDSTNLEDEYLRNKLRLNVIPLLKEINPSVCESITETARRLS 222 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290 + A+ TV + + +I + L V + ++ + Sbjct: 223 DVEAVYRKSIQTVCTE--VTEREGKFSISRIMKAVAPLAVLFELL--HPYGFNAVQLKNI 278 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 L + V+ R ++L++ R Sbjct: 279 YRSLGTESGKLFYSENYVLLRDRDYLFLKRR 309 >gi|91201108|emb|CAJ74167.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 482 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 8/257 (3%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72 L+ P ++V VSGG DS+ LL LH + + ++ +++ ++H LR ++++ ++ Sbjct: 18 QLIQPDDSVIVGVSGGPDSVALLKTLHFLNAAKNL-RLRLYVAHLNHQLRGDFSEEDEQF 76 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V D+ ++L + S+ + L AR+ RY SE ++ N + + T H Sbjct: 77 VQDLANKLSLPFISKRVNIGKIASETKLSLEEMARKERYTFYSEASQNYNVSHVATGHNA 136 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ET+ R R G+G + + I RP L +++I +L + + Sbjct: 137 DDNAETILHRIIRGTGAPGLGGIPIKRLLSPGTPQLIIRPLLFAWKKEILEYLNKDKTKY 196 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMR 247 D SN + + R R+R + + H +K L + L+ +V Sbjct: 197 RVDASNYEKEYTRNRIRHELIPLLEHKYNPNIKNALSRLSQILTINNEYLLAACESVFEN 256 Query: 248 SIIAISQDILNIDSTLL 264 +I+ + +++ L Sbjct: 257 AIVKEPDNAYVLNAGFL 273 >gi|313203122|ref|YP_004041779.1| tRNA(ile)-lysidine synthetase [Paludibacter propionicigenes WB4] gi|312442438|gb|ADQ78794.1| tRNA(Ile)-lysidine synthetase [Paludibacter propionicigenes WB4] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 133/323 (41%), Gaps = 38/323 (11%) Query: 7 ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V+ ++ + L+ P A ++V VSGG+DS+ LL LH + + + LR Sbjct: 3 QKVQSYIERQQLLNPKARVIVGVSGGTDSVVLLHILHVL-------GYECVVAHCNFHLR 55 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E + + +V + +++ + + + + AAR+ RY + K ++ Sbjct: 56 MEESDRDEEFVRALSKTMKLPFYSIDFDTVSYADRHGISIEMAARDLRYEWFHDLLKKLD 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH DD +ET+ M R +G+ + + N + RP L C R+++ Sbjct: 116 AEAIAVAHHADDSIETMLMNLVRGTGLRGL-------SGIRPRNKKVIRPLLCCNRQELE 168 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231 ++L++ ++ ED +N ++R + R V + LY +K+F + + Sbjct: 169 NYLIRYDLEHVEDSTNASVDYQRNKFRNEVLPLLEEINPSLRQTLYESLKRF-EGTTAIY 227 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 I + + + ++ DI+ + + + ++E+V Sbjct: 228 AQAIDTIREKIAETADGLTKLNIDIIKQQVHIPTVMYEIL------HPFGFSGATIEQVT 281 Query: 292 LFLKS--GKRGCVSIGRVVIDRR 312 L + GK R++ DR+ Sbjct: 282 ENLDAVSGKTFYSDTHRLIKDRK 304 >gi|332883365|gb|EGK03648.1| hypothetical protein HMPREF9456_01715 [Dysgonomonas mossii DSM 22836] Length = 441 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 27/276 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +E + L + ++V VSGG+DS+ LL LHS+ K K + Sbjct: 1 MNIVQVEQYIDEHQLLEDGSKVIVGVSGGADSVALLDILHSL-------KYKCVVAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 LR E + + +V ++C + + + V + + AARE RY + Sbjct: 54 HLRGEESNRDAFFVEELCQKYNLKYERVDFDTEAYAEIHSISIEMAARELRYNWFEQIRT 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A I AH DD +ET+ + R +G+ T + N I RP L R+ Sbjct: 114 IHLADKIAVAHHRDDSVETILLNLIRGTGIRGL-------TGIAAQNNNIIRPLLCLSRK 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 DI +L R + + +D +N +D + R ++R + + L +D ++ Sbjct: 167 DILEYLKDRGLKYVDDSTNNEDLYTRNKIRLNIIPL----LETINPSVKDSIIRTGEH-- 220 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + + ++ I + D+L+ DS + L++ Sbjct: 221 --LSQVENIYNFYIQQVKADVLSDDSINIRTLIKYL 254 >gi|21672395|ref|NP_660462.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25090671|sp|Q8KA23|TILS_BUCAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21623002|gb|AAM67673.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 445 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 134/316 (42%), Gaps = 19/316 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS LL + + +IK AI ++H L ++K + +C + +I Sbjct: 15 LIAYSGGIDSTVLLYKMLKIKEKN--PQIKIRAIHINHNLHPSSKKWEEHCIKICHKYKI 72 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 K + + R RY I + +N +++T H +DQ ET+++ +R Sbjct: 73 PIITKEIKIL-LKKNIEETLRIKRYNTIYNYL--LNDEILLTGHHLNDQCETLFLSLKRG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLSGM I RPFL +++++ + + N+ ED SN + ++R Sbjct: 130 SGP--TGLSGMSIENFLGKK-RIVRPFLTKTKKELQKWACENNLESIEDFSNFNIDYDRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257 +R + I +K V + L +L ++++I Q+ Sbjct: 187 FIRHKLIPILEQRWPFFLKNCFRTTV-ICREETKLKNIFLKEKIQNLINFDESLNIQNFK 245 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRAN 314 NI+ + L+R ++ I +P Y+++E + ++ K + I + I R Sbjct: 246 NINKEVCKALIRYWISL--KNIKMPSYKTIECIYNEIICSKKDSNPKIIIDKNEIRRYKT 303 Query: 315 FLWITRAVRNLPTLIL 330 L+ + +++ + L Sbjct: 304 SLYFIKIQKDISNIFL 319 >gi|166711443|ref|ZP_02242650.1| cell cycle protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 434 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 78/354 (22%), Positives = 131/354 (37%), Gaps = 19/354 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 13 PPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRSC 69 Query: 78 SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L++ +V + + GL AAAR AR+ + + AH DDQ ET Sbjct: 70 DALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETFL 127 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R+ R +G+ N + RP L R D+ ++ L + + W EDPSN D Sbjct: 128 LRALRASGPEGLAAM---RPQRPFANGTLWRPLLAHSRADLLAYALAQKLRWIEDPSNAD 184 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAIS 253 +R +R V + +A A+L+ + + + + A+ Sbjct: 185 PHHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGALD 244 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDR 311 L L + LP ++ER + + ++ C + +V + R Sbjct: 245 LHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVRR 304 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ R PT + WDG Q + +++ + + P Sbjct: 305 WRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353 >gi|332879744|ref|ZP_08447434.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682263|gb|EGJ55170.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 434 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 30/311 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75 + +LVA+SGG DS+ L L+S ++ + LR E + + +V Sbjct: 9 LKHQRVLVAISGGIDSVVLAHLLYSHGAE-------VILAHCNFSLRGEESDGDEAFVRS 61 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RL + V + + Q AARE RY A+ I TAH +D Sbjct: 62 FAERLGVQLLVERFDTHAYAKEHQLNTQLAARELRYEWFDRMAQAYACAYIATAHHANDN 121 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + R G+ + N + RP L R+ I + + +SW ED Sbjct: 122 LETFLINLSRGSGLDGL-------LGIPQQNGKLIRPLLSFSRQQIYQYAQAKQLSWRED 174 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-- 249 SN +++ R +R + + ++ F + ++ + + + Sbjct: 175 SSNASNKYVRNVIRHEIIPQLRYVHPNYLENFNQTQEYLHQSARFIDYYIEKIRNECFQG 234 Query: 250 --IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 I IS L L L R+ + + +++++ ++GK C ++ Sbjct: 235 DPIRISPSPLLQVPELPLVLHRLFYPYGFNNV-----KDLQQLLFTAEAGKMLCSPSHQL 289 Query: 308 VIDRRANFLWI 318 + D ++W+ Sbjct: 290 IKD--KEWVWL 298 >gi|167761978|ref|ZP_02434105.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC 43183] gi|167700210|gb|EDS16789.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC 43183] Length = 431 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 63/277 (22%), Positives = 109/277 (39%), Gaps = 31/277 (11%) Query: 7 ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ + L+ P +LVA+SGG+DS+ LL L + A + LR Sbjct: 4 EKVAQYINRKQLLQPTDKVLVALSGGADSVALLRLLQA-------SGYDCEAAHCNFHLR 56 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 + + +V +C + ++ V + + + AARE RY E + IN Sbjct: 57 GAESDRDEAFVRQLCVKQQVPLHTVHFDTARTAEERHISIEMAARELRYGWFEEIRQKIN 116 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH DD +ET+ + R G+ + N I RP L R++I Sbjct: 117 ADAIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLERKEII 169 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231 S+L + + D +N D + R ++R + + ++ + Sbjct: 170 SYLNRIGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILNTAEHLDGASAIYK 229 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + I + T I + Q+ +TLLF +L Sbjct: 230 QGIDEGIKRVRTAEGICIERLMQEP--APATLLFEIL 264 >gi|332800081|ref|YP_004461580.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1] gi|332697816|gb|AEE92273.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1] Length = 462 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 24/285 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 +E+ R + + ++VAVSGG DS+ LL + S+ I A +DH R Sbjct: 8 LETTRKY-NMIQKKDKVIVAVSGGPDSVCLLHLFMTFKSEL---DISLYAAHLDHMFRGR 63 Query: 65 TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 ++++ +V +C R + V K AAR RY K A Sbjct: 64 ESEEDACFVKTLCDRWGVPLFSENINVPEYVKKSGLSPEDAARRVRYDFFERVKKQTGAQ 123 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + T H +D ET+ M R G+ + + RP + REDI + Sbjct: 124 KVATGHNRNDHEETILMNIFRGAGLDGL-------IGIEPVRDCYIRPLIEIPREDIERY 176 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVK----VNN 232 L + I + D +N + R +R + + L +++ ++ + + Sbjct: 177 LKHKEIPFRIDATNLTTDYFRNSIRLELMPLIRKKYCPHLGQSLRRLSEIARRDLSFMEQ 236 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 + +I + + + + L R++ G Sbjct: 237 ETEKAHANVIRYEPAKVIIDVKKFSKLHEAIKYRLTRLAVENLTG 281 >gi|256840787|ref|ZP_05546295.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298376612|ref|ZP_06986567.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19] gi|256738059|gb|EEU51385.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298266490|gb|EFI08148.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19] Length = 438 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R ++ R L +LV +SGG+DS+ LL L + A+ + L Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + + + L + + + + + AARE RYA E + + Sbjct: 55 RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGERHLSIEMAARELRYAWFEEMRERL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AH DD +ETV M R +GM + + N +I RP L REDI Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + ++ D +N D + R +R V + L + + R + + A Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294 I Y+ R + +S D L+I + + F + G L + Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336 + GK S R++ DR ++LWIT + T +L PE+ Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324 >gi|116626117|ref|YP_828273.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus Ellin6076] gi|122251826|sp|Q01QT2|TILS_SOLUE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|116229279|gb|ABJ87988.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus Ellin6076] Length = 440 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 26/334 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 A + V VSGG+DS+ LL AL + G +K S + VDH LR ++ + +V Sbjct: 2 FASGARVAVGVSGGADSVCLLHALVEL------GGLKLSVLHVDHGLRGAESRADAEFVG 55 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ +R+ + + + R AR E N + HT DQ ET Sbjct: 56 ELAARMGLPFCLREVTLGP--GNVEQEGRRARLRFFHEQLAAGNCDRVALGHTRSDQAET 113 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V R R GL+G+ I RP + R +I +L +R I W ED +N Sbjct: 114 VLFRFLRGSGT--AGLAGIRPVTAEG----IVRPLIELERAEIEEYLRERQIPWREDATN 167 Query: 195 TDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNN----AVAMLIPKYLTVHM 246 + F R R+R + AL + + + L + LT Sbjct: 168 AGEEFARNRIRHGLLPQLAAEWNPALVETLAHTAEFARAEEAYWAGEIDRLSAESLTAGD 227 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIG 305 ++ ++ + + + L+R + + G + + +ERV+ + RG + Sbjct: 228 GCVLIRTESLKALSLAVARRLVRRAIQMAKGDLRGVDFGHVERVVELASAPTGRGRTQVP 287 Query: 306 RVVIDRRANFLWITRAVRNLPTLI--LYPEETTV 337 + + R +L + P + L P T + Sbjct: 288 GLDVRRSFEWLRLGVPFTRKPYSLKPLVPGTTQI 321 >gi|332184367|gb|AEE26621.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida 3523] Length = 398 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 15/287 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P+HI++ SGG DS LL + I AI ++H L + + Sbjct: 15 ISPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQT 67 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C R + + + A A + R A + + L++ H DDQ ET Sbjct: 68 CQRYNLEFISHALDKAPKGESFEAWASKQRMAFFEKIMQQYPKPLLLLGHHQDDQAETFL 127 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +++ R G+ + + + RP L + +I F NI++ D SN D Sbjct: 128 IQAIRGSGLAGLAGMPYYKKLHHGG---VLRPLLNYTKIEIEEFAKLNNITYIYDDSNED 184 Query: 197 DRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 185 TKYRRNLIRNEIIPILQQVNPNISQTLSRSANICAQSNNVLHKLLTEKLQSISQGTTLII 244 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 ++ +D + LL + QI + ++ + L + + G Sbjct: 245 SELTKLDDDIQKSLLHLWFKQNTQQILK--SKQIKDIYLAVNNPTTG 289 >gi|325663698|ref|ZP_08152102.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470191|gb|EGC73424.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium 4_1_37FAA] Length = 367 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 18/264 (6%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 VR ++ R ++ +SGG+DS+ L LH + + +K A+ V+H +R Sbjct: 20 ARVRAYIQEHRMFERGETVITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIR 76 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E A + R+V ++C I +V K + + A R R A+ Sbjct: 77 GEDADADERFVQNICETAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYG 136 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH +D ET+ M R GM T + + RP L R +I Sbjct: 137 AAKIALAHHKNDNAETLLMNLVRGTGLNGM-------TGIKPVRDRYVRPLLCLERREIE 189 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 FL Q I + D +N + + R ++R V + + + +V + Sbjct: 190 GFLEQNGIRYQTDQTNLTEDYTRNKIRNRVIPYMETQINPRAAAHLSEAAEQLRSVQEFL 249 Query: 239 PKYLTVHMRSIIAISQDILNIDST 262 K L V + ++ + L I + Sbjct: 250 EKQLKVFKENCVSRKGEKLLIRTE 273 >gi|219681486|ref|YP_002467871.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682042|ref|YP_002468426.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471165|ref|ZP_05635164.1| cell cycle protein MesJ [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621775|gb|ACL29931.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624329|gb|ACL30484.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085853|gb|ADP65935.1| cell cycle protein MesJ [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086423|gb|ADP66504.1| cell cycle protein MesJ [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 440 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257 +R V I +K + + L+ +L + +I ++ Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314 NI + L+R + +I +P Y++++ R M+F + + +G+ + R Sbjct: 246 NIKQEMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303 Query: 315 FLWITRAVRNLPTLILYPEETTV 337 L + +L +L+ + + Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326 >gi|311087006|gb|ADP67086.1| cell cycle protein MesJ [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 440 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257 +R V I +K + + L+ +L + +I ++ Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314 NI + L+R + +I +P Y++++ R M+F + + +G+ + R Sbjct: 246 NIKQEMCTALIRYWILL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303 Query: 315 FLWITRAVRNLPTLILYPEETTV 337 L + +L +L+ + + Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326 >gi|104783178|ref|YP_609676.1| cell cycle protein MesJ [Pseudomonas entomophila L48] gi|95112165|emb|CAK16892.1| putative cell cycle protein MesJ [Pseudomonas entomophila L48] Length = 431 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 104/305 (34%), Gaps = 18/305 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R AI V H L+ A + VC+ L I Sbjct: 19 VAFSGGLDSTVLLHLLADYA--RHHPAPPLRAIHVHHGLQAAADAWPDHCRAVCAALGIE 76 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + + P L AAR ARY + ++ T DDQ ET+ R R Sbjct: 77 LDVIPVQVA-PGASLEQAARNARYGAFEQLL--NPGDVLFTGQHRDDQAETLLFRLLRGA 133 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + + RP L R+ ++++ + W +DPSN D F R Sbjct: 134 GLRGLSAMPVHRVLGRGG---LVRPMLGLSRQRLQAYAEAHGLVWVDDPSNRDTAFARNF 190 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A+ +L + + L +DS Sbjct: 191 LRGEVFPLLRSRWPQAEANLARSAEHLGEALGLLDELAASDLACACDNAPLPWLGLDSLS 250 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L L +S A G + LP R + + + R Sbjct: 251 LESLAALSPARQRNALQFWLGQRSRLPDSRHWAGWNDLRDAAPDASPIWRLADGELHRSH 310 Query: 314 NFLWI 318 +W Sbjct: 311 GRIWW 315 >gi|281425843|ref|ZP_06256756.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302] gi|281400104|gb|EFB30935.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302] Length = 449 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 143/373 (38%), Gaps = 47/373 (12%) Query: 1 MFLSPIESVRFFVRS--LVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M S ++ F+ L+ P LVA+SGG DS+ L + + + I Sbjct: 1 MLSSFARRIKLFIDRNLLLKPEGFYLVALSGGCDSVALFRVMIEL-------GYHIAVIH 53 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112 + LR E ++ + + ++C+ ++ V + + + AARE RY + Sbjct: 54 CNFQLRGEESERDEHFCEELCNSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQ 113 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 K I A I+ AH DD +ETV + R + G+ + N + RP L Sbjct: 114 LRKDICADAILVAHHQDDTVETVLLNLIRGTSIHGL-------QGIKPKNGHVIRPLLSM 166 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225 R DI ++L ++ D SN +R ++R R + ++ L K D Sbjct: 167 TRNDIENYLSSIQQTFITDSSNLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLND 226 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLP 282 +NA+ + + V + D L L+ +L++ + Sbjct: 227 AAKVFDNALQESVERVTLVRKADRYVVDIDKLEREISPEQTLYSILKIFSF--------- 277 Query: 283 GYRSME--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-VWD 339 +E L +GK+ + VIDR L I + ++ PE VWD Sbjct: 278 SSVQIENMACSLDAPTGKKWLSNTHEAVIDR--GTLVIASLLNASNKVLKVPETGCYVWD 335 Query: 340 GRYQFQNLSDSLI 352 + +F N++ +I Sbjct: 336 DKVKF-NITSHVI 347 >gi|15616731|ref|NP_239943.1| cell cycle protein MesJ [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11386907|sp|P57211|TILS_BUCAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|25325269|pir||E84942 cell cycle protein mesJ [imported] - Buchnera sp. (strain APS) gi|10038794|dbj|BAB12829.1| cell cycle protein mesJ [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 440 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H + +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257 +R V I +K + + L+ +L + +I ++ Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314 NI + L+R + +I +P Y++++ R M+F + + +G+ + R Sbjct: 246 NIKQAMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303 Query: 315 FLWITRAVRNLPTLILYPEETTV 337 L + +L +L+ + + Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326 >gi|120436499|ref|YP_862185.1| PP-loop family protein [Gramella forsetii KT0803] gi|117578649|emb|CAL67118.1| PP-loop family protein [Gramella forsetii KT0803] Length = 437 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 90/409 (22%), Positives = 156/409 (38%), Gaps = 54/409 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 + +L+AVSGG DS+ L S K+ F+ + LR + + D+ ++V D+ Sbjct: 18 GSKLLLAVSGGVDSVVLAHLCLS-------AKLDFTIAHCNFNLRGDESDDDEKFVVDLA 70 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + S+ + + AARE RY +E + ++ +TAH +D LE Sbjct: 71 DFLEVEVYTESFNTLKFAENNKISVQMAARELRYEWFAELSNSVQFDYTLTAHHANDNLE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R +G+ T + I RP L R +I F ++N+ W ED S Sbjct: 131 TFLINLIRGTGPEGL-------TGIKKEKNEIVRPLLPFTRSEIEDFARKKNLKWREDSS 183 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII--- 250 N D++ R ++R + + + F + + + L+ Y+++ ++ Sbjct: 184 NASDKYMRNKIRHQIVPVMEELNPQLLDVFSRTQEHLQEGLD-LVEDYISLLYPKLVQKD 242 Query: 251 ----AISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 AI+ + L +L+ LL+ + ++ +SGK Sbjct: 243 KFGYAINIEFLKKVPNQKQILYQLLKSFGFTEWNDVYD---------LMDAQSGKMVLSD 293 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQ------FQNLSDSLIQI 354 R++ DR+ L L EE V G + +S S I + Sbjct: 294 SHRLIKDRKKLLLTEHYEKSGNNEYNLCKEEDLVMIPGMGTFHIHKVEKISKISASCIYV 353 Query: 355 GPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 RK D P I ++ P GK L+ F + KF LP Sbjct: 354 ---PERKLDFPLTIRK--WKKGDFFYPFGMNGKKKLSDFFKD-EKFSLP 396 >gi|150008036|ref|YP_001302779.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503] gi|226695544|sp|A6LBU3|TILS_PARD8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|149936460|gb|ABR43157.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503] Length = 438 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R ++ R L +LV +SGG+DS+ LL L + A+ + L Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + + + L + + + + + AARE RYA E + + Sbjct: 55 RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGERHLSIEMAARELRYAWFEEMRERL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AH DD +ETV M R +GM + + N +I RP L REDI Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + ++ D +N D + R +R V + L + + R + + A Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294 I Y+ R + +S D L+I + + F + G L + Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336 + GK S R++ DR ++LWIT + T +L PE+ Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324 >gi|328463465|gb|EGF35116.1| tRNA(Ile)-lysidine synthase [Lactobacillus helveticus MTCC 5463] Length = 418 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 21/311 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V +LVA S G DSM LL L ++ + K A +H LR +++E +++ Sbjct: 14 VTDKKLLVAASSGPDSMALLDMLRNLQDN---AHFKLMAAHFNHQLRADSEEESKFLKKY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 CS + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + Sbjct: 71 CSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M M + + + RP L + ++ + + I + D +N Sbjct: 131 LLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQ 187 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R R+R V + L + + + + LI + Sbjct: 188 ADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---------YVDEKNS 234 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 + + L R+ + +R + + K +R ++G V+ N+ Sbjct: 235 AMGQLESFLNVAYRIKSEALSQLTEKERIFFWQRTI-WQKYHRRVNENLGNFVVMEYQNY 293 Query: 316 LWITRAVRNLP 326 ++ + L Sbjct: 294 FYLYKKQNILE 304 >gi|310764931|gb|ADP09881.1| tRNA(Ile)-lysidine synthase [Erwinia sp. Ejp617] Length = 433 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 83/360 (23%), Positives = 142/360 (39%), Gaps = 30/360 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R ++ A+ + H L + Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PHLQLRAVHIHHGLSQL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A D + C R ++ VV + G+ AAAR+ARY + EH I ++TA Sbjct: 59 ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREHL--IAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ++W ED SN D R++R +R V + L + F + + Sbjct: 174 LNWIEDDSNQDARYDRNFLRLQVMPL----LNQRWPHFASAVARSAQLCGEQERLLDELL 229 Query: 246 MRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FL 294 S+ + + +L + LLR A G+ +P +++R+ L Sbjct: 230 SESLDVLVDESGALCFTPLLTMSDARRAALLRRWIARQHGR--MPSRAALQRIWLEVACS 287 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 ++ C+ IG + R + L+ LP L+ W +Q L D L Q+ Sbjct: 288 RADAEPCLRIGGNEVRRFRDRLYW------LPQLLPLGASQLAWPAPWQPLTLPDGLGQL 341 >gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429] gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429] Length = 423 Score = 210 bits (536), Expect = 3e-52, Method: Composition-based stats. Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 32/304 (10%) Query: 2 FLSPIESVRFF--VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E ++ F +R IL+ VSGG DSM LL L+ V + I ++VD Sbjct: 4 LKNFLEKIKQFDIIRC---DDKILIGVSGGVDSMTLLYLLNGV---KDILNIDIVCVTVD 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 H LR+ +K+E+ V + L + V + + + + AAR+ RY + Sbjct: 58 HGLRKESKEEINLVKEFSRSLDVPCISGEIDVLGYSKEKKLSIEEAARKLRYEFFYRIKE 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + A+ I AH +D +E V R R G+ GM + I RP L RE Sbjct: 118 KVGASKIAVAHNLNDLVENVLFRLSRGAGP--FGIYGMK-----PVKGNIIRPLLFFTRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVN 231 DI F I + D SN D ++ R +R + L + +F + +++ Sbjct: 171 DIEDFAGNNKIPYAVDKSNFDTKYTRNFIRHNIIP-KFKELNPSFERAVFRFVENLWELD 229 Query: 232 NAVAMLIP-KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + I K++ + + +D +L +R G P ++R+ Sbjct: 230 DFMENTINVKHVKIFDGVYFKVPED-----EYVLVEFVRRQTIEQLGIA--PDKEKLDRL 282 Query: 291 MLFL 294 L Sbjct: 283 KRSL 286 >gi|161506859|ref|YP_001576813.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571] gi|160347848|gb|ABX26522.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571] Length = 431 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 129/323 (39%), Gaps = 24/323 (7%) Query: 8 SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F R V +LVA S G DSM LL L ++ + K A +H LR Sbjct: 15 KIADFFRENNINVTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRA 71 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 +++E + + CS + + W K +P+ G+ AAAR ARYA +++ AK NA ++ Sbjct: 72 DSEEESKLLKKYCSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLL 131 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD LE + ++ R + M M + + + RP L + ++ + + Sbjct: 132 TAHHGDDLLENILLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQE 188 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I + D +N D R R+R V + L + + + + LI Sbjct: 189 YQIDFVIDSTNQADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---- 240 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + + L R+ + +R M++ K +R + Sbjct: 241 -----YVDEKNSAMGQLESFLNVAYRIKSEALSQLTEKERIFFWQR-MIWQKYHRRVNEN 294 Query: 304 IGRVVIDRRANFLWITRAVRNLP 326 +G V+ N+ ++ + L Sbjct: 295 LGNFVVMEYQNYFYLYKKQNILE 317 >gi|197302373|ref|ZP_03167430.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC 29176] gi|197298552|gb|EDY33095.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC 29176] Length = 498 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 19/249 (7%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + V ++ + I+ VSGG+DS+ LL L + F + Sbjct: 1 MMDKKRKKVEQYIEQYQMIGRGDRIVTGVSGGADSVCLLFVLCELRKKLGF---EVIVCH 57 Query: 58 VDHCLRETAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISE 112 V+H LR A + + YV ++C +L + + V + L A R R Sbjct: 58 VNHQLRAEAAEQDEAYVKELCRKLDVPCRIFHENVELIAKNGKKSLEEAGRIVRSNAFET 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + A I TAH +D ETV + R GL GMC N RP L Sbjct: 118 VCRESGANKIATAHHKNDNAETVLLNLARGS-----GLQGMCGIRPVYGNR--IRPLLCL 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-YLKMKKFQDLRVKVN 231 R++I +L + IS+C D +N +D + R R+R + + + ++ L ++ Sbjct: 171 TRKEIEEWLEEEQISYCTDETNEEDEYTRNRIRHKILPVMEQEINRQTVEHINRLSLQAE 230 Query: 232 NAVAMLIPK 240 L + Sbjct: 231 EIWEYLNLQ 239 >gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Coprococcus catus GD/7] Length = 476 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 27/275 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 ++V VSGG+DS+ LL L ++ + ++ +A+ + H LR A D + +V+ +C + Sbjct: 26 VVVGVSGGADSVCLLSVLKNLQMSMA---LQLTAVHIHHGLRGEAADRDRDFVTALCEDM 82 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I + + A R+ RY E + A+ I AH DD ETV Sbjct: 83 QIPCVCFQADIRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHRDDLAETVL 142 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R KG+ M + I RP L R DI ++L ++ +S+ D +N + Sbjct: 143 LNLFRGSGLKGLSGIPM-------MRGCIVRPLLGVGRADIEAYLGRQGMSYRNDATNFE 195 Query: 197 DRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R R+R + + + D+ V N A + + + + Sbjct: 196 TEYTRNRIRLDILPYVTEHINQAAVSHIAETAAIASDICRYVENQAAAIGKSIVQWNGEA 255 Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQI 279 ++ + D + LLR GQ+ Sbjct: 256 ECLTAEIDAAAFVGQDIAIQRELLRQVLERTAGQL 290 >gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540] gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540] Length = 462 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 15/306 (4%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E RFF ++ ++VAVS G DSM LL L + + + V+H Sbjct: 7 FKRHLERGRFFDKN----DRVVVAVSTGVDSMVLLALLQELPASLR---PQIIVAHVNHR 59 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ +++E +++ D C R+ V W PQ G+ AAR+ RY ++ K AT Sbjct: 60 LRKQSEEEEQFIRDYCEDHRLKLVVHHWPLTEHPQNGIEEAARKMRYCFFAQVMKDEQAT 119 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ + + + RP L ++ +R + Sbjct: 120 ILLTAHHQNDLAETMLMKLTRGGQLH--QLIGIEEKRPFASG-TLERPLLNFPKQRLREY 176 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237 + ++ W ED +N + R R R V + + + ++ AV + Sbjct: 177 AVNNHLKWYEDLTNRELTVSRNRFRHQVIPLLEKENSNFLAALSNYHEQLELAVELENQF 236 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + L + L L+ V + + +E+V+ + + Sbjct: 237 AQEQLAKLSNKEGHLDIKALCQLPLAKERLVLVK-WLEKNGVLGLKRGFVEQVLSDINNR 295 Query: 298 KRGCVS 303 + Sbjct: 296 HLPQIK 301 >gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis 3_1_45B] gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis 3_1_45B] Length = 702 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 126/326 (38%), Gaps = 27/326 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSD 75 + P ++VA+SGG DSM LL + +DR I + A+ V H L A + Sbjct: 195 LNPVRVIVALSGGRDSMALLDVAARIAADRRQQLIAELRAVYVHHGLEREADAWEEHCRR 254 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + + V + + G+ AAAR+ RY ++++A ++IMTAH DD++ET Sbjct: 255 ECEKRGVIFEAVRVRVQRSGDGIEAAARDVRYRALAQYALKSGCSIIMTAHHEDDRIETF 314 Query: 136 YMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 ++ R +G+ + +++ RP+ R DI ++ R Sbjct: 315 LLQWMRGAGLEGLAAFPEVRELAAPSMEDAKAVQARKQVFLLRPWSGVLRRDIERYVKNR 374 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 I + +DPSN ++ R RVR + + L F + + + +V Sbjct: 375 RIPYVDDPSNNSPKYARNRVRSEI----IPRLEAIRPGFSASAARSVGLIGEALEVLKSV 430 Query: 245 HMRSIIAISQD----------ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSMERVMLF 293 + A + +L + + LR A G + S + R + Sbjct: 431 ARADLEACRSETMPHGLSVYRLLELIPARQAWCLRAWIAAEGLRPLSKARLDDLLRQVRE 490 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWIT 319 S + R I R + + + Sbjct: 491 THSDATFSFHVQRKEIRRWGSDIIVR 516 >gi|262381387|ref|ZP_06074525.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296564|gb|EEY84494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 438 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R ++ R L +LV +SGG+DS+ LL L + A+ + L Sbjct: 2 IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + + + L + + + + + AARE RYA E + + Sbjct: 55 RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AH DD +ETV M R +GM + + N +I RP L REDI Sbjct: 115 GGQATAVAHHRDDSVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + ++ D +N D + R +R V + L + + R + + A Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294 I Y+ R + +S D L+I + + F + G L + Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336 + GK S R++ DR ++LWIT + T +L PE+ Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITPLEKKEERTFVLDPEKGI 324 >gi|24373213|ref|NP_717256.1| cell cycle protein MesJ [Shewanella oneidensis MR-1] gi|61216652|sp|Q8EGF9|TILS_SHEON RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24347437|gb|AAN54700.1|AE015610_4 cell cycle protein MesJ [Shewanella oneidensis MR-1] Length = 464 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 19/317 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +++A SGG DS L L R +++ I V H L A + ++ Sbjct: 19 LQAGSKLVLAYSGGVDSEVLAYGLSEYAKQR--PDLRYQLIYVHHGLSPNADNWAKHCQA 76 Query: 76 VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + P+ + A AR+ARY I H +++TAH DDQLET Sbjct: 77 RAAIYGLPVTVERVQLILGPRVSVEAEARKARYQAILPHLNPQ--DILLTAHHEDDQLET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + +R KG+ G + + RP L RE I +F R + ED Sbjct: 135 ILLALKRGQGPKGLAAMGQIQPLSLADKGSCLQVRPLLDISREMIETFAQTRQLVHIEDE 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN DD+++R +R + L A + + ++ ++ ++ + ++ Sbjct: 195 SNQDDKYDRNFLRLEIIPR-LKARWPSIATTASRSAQLCAEQQAIVETEVSERLPKLLVK 253 Query: 253 S----QDILNIDSTLL----FYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRGC 301 + Q +L + + + + I + SLP Y + M + ++ K + Sbjct: 254 APVTEQTVLKLSELAAQPIEWQGILLRGFIESQEFSLPSYVQLQQMLQQLIHAKEDAKVH 313 Query: 302 VSIGRVVIDRRANFLWI 318 + I V+ R A L++ Sbjct: 314 IRINDCVLRRFAGMLYL 330 >gi|242371661|ref|ZP_04817235.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W1] gi|242350610|gb|EES42211.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W1] Length = 432 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 21/254 (8%) Query: 18 YPAHILVAVSGGSDSMGLLI-ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 AH++VAVS G DSM LL LH + K + + V+H LR + +E +++ D Sbjct: 10 KDAHLVVAVSTGVDSMSLLHSLLHDYHNTYR----KLTCVHVNHGLRHQSVEEEQFLKDY 65 Query: 77 CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C I V S + + AR+ RY E + I+A ++TAH DDQLE Sbjct: 66 CRAHHIELYVKHLDLSQIVEKGNSIQHEARQRRYDWFGEIIQKIDADALLTAHHLDDQLE 125 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T++ R + + + + + RP L +EDI ++ I + ED S Sbjct: 126 TIFYRLLSGRSTRSALGMSLISNY---KHYRVCRPLLEVSKEDILAYQHSNTIPYFEDDS 182 Query: 194 NTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N D ++ R +R+ + +D H L L++K + D +++ N A + Sbjct: 183 NQDTKYVRNDIRQRILPTINRNPFLDTHHL-LRLKDWHDNELQLLNEYAQHFITHFVFEN 241 Query: 247 RSII--AISQDILN 258 + + + S++ N Sbjct: 242 KDEMGYSFSREAFN 255 >gi|116617526|ref|YP_817897.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096373|gb|ABJ61524.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 430 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 27/297 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + ++ +P ++VAVSGG DS+ L+ AL K V++ LRE + Sbjct: 3 EKILQTIQQYNWPETVIVAVSGGVDSVVLVHALSK-------TKANLVIAHVNYRLREES 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D+ +V + ++ W++ P + AAR+ RY E A+ + I AH Sbjct: 56 DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 114 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R + MG N + RPFL ++++ ++ ++ Sbjct: 115 HADDQAETVLLKMIRGGRLQQMGGMQTK-------NHKVIRPFLSITKQELITYAQDNHL 167 Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 W +D +N D + R +R V L L ++ +NN A ++ + + Sbjct: 168 GWRQDKTNFDVDYTPRNLLRNDV----LPKLTTINQR---AVRHINNMAAQILQQQRLID 220 Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 ++ I + QD I + L+ L + + ++ +++++ L + + Sbjct: 221 NQAKIYANDIQDWQKIPT--LWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKP 275 >gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121] gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121] Length = 434 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 15/305 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + +SGG DS+ LL L + AI + H L + A R+ +C Sbjct: 23 KEQPIYLGLSGGVDSVALLHLLVEAGLGH-----RVKAIHIHHGLSQNADAWYRFCEALC 77 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++A + + + AAR ARY + + + ++ AH DQ ET+ Sbjct: 78 QQYQVAFKGHKVELDTQKHSIEEAARIARYDIFASYLNKN--AYLLLAHHAGDQAETLMF 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G GL+GM ++ RP L + ++ ++ Q ++W ED SN D+ Sbjct: 136 RLLRGTG--GKGLAGMPAKRELGAG-FLYRPLLSFDKTNLIQYVKQNGLTWVEDESNQDE 192 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---NAVAMLIPKYLTVHMRSIIAISQ 254 F R +R + + + ++ +A L L+ ++ Sbjct: 193 AFSRNHIRHQIIPKLQAFEPQAECRIEQAAKRLAFDYQMLANLSRDKLSAWQAQDTSLKL 252 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 D + +D + LR + ++ ++ F + GK+ C + R Sbjct: 253 DAIAALDQEQRVFWLRQYLELFSISLTQAQVLAVNE-SFFTEQGKQPCFEHKLARLMRFQ 311 Query: 314 NFLWI 318 N L++ Sbjct: 312 NRLYV 316 >gi|299140703|ref|ZP_07033841.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735] gi|298577669|gb|EFI49537.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735] Length = 439 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 82/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%) Query: 16 LVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73 L+ P LVA+SGG DS+ LL + + + I + LR E ++ + R+ Sbjct: 8 LLKPGGFYLVALSGGCDSVALLRVMIEL-------GYHIAVIHCNFQLRGEESERDERFC 60 Query: 74 SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++C+ ++ V + + + AARE RY + K I A I+ AH D Sbjct: 61 EELCNSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQD 120 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ETV + R G G+ G+ + N + RP L R DI ++L ++ Sbjct: 121 DTVETVLLNLIR-----GTGIHGLQG--IKPKNGHVIRPLLSMTRNDIENYLSSIQQTFI 173 Query: 190 EDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D SN +R ++R R + ++ L K D+ +NA+ + + Sbjct: 174 TDSSNLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDVAKVFDNALQESVERVT 233 Query: 243 TVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297 V + D L L+ +L+ + +E + L +G Sbjct: 234 LVRKADRYVVDIDKLEREISPEQTLYSILKNFSF---------SSVQIESIACSLDAPTG 284 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-VWDGRYQFQNLSDSLI 352 K+ + VIDR L I + ++ PE VWD + +F N++ +I Sbjct: 285 KKWLSNTHEAVIDR--GTLVIAPLLDASNKVLKVPETGCYVWDDKVKF-NITSHVI 337 >gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 425 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 18/266 (6%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREA 105 + +A+ ++H +R A D+ ++V D+C +L I + + + L A R+A Sbjct: 2 NLTITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKA 61 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 RY ++ K NA I AH +DQ ET R R G G + + + Sbjct: 62 RYDAFAKTMKKYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAM-------REKDGNL 114 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYL 218 RP L ++E+I +L + +W ED SN DD F R ++R V + + + Sbjct: 115 IRPLLCVKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIRNQVIPRLEMINEQAVEHIGW 174 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 + +++ + + + + + +L + + +L+ G+ Sbjct: 175 LCEDIKEVTTYLTDQIEESFLRCTKPIGQGFEINCDQLLLENHWIQKQVLKKVLEETAGK 234 Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSI 304 R +E ++ +++G +S+ Sbjct: 235 KKDLERRHIEDLLTLVENGTGKRISL 260 >gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens] Length = 569 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 30/313 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEVRYVSDVCSR 79 +AVSGG DSM L + + + + I VDH LR + E V Sbjct: 1 AIAVSGGPDSMALCLVAKEWWKGFRESGVFAERPTGIVVDHGLRPESAAEALQVQRWVLD 60 Query: 80 LRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L V+ W N +P +G L AAR ARY+L+ + ++T H DDQ E Sbjct: 61 LGFECHVLKCDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQAELFM 120 Query: 137 MRSQRDYAEKGMGLSGMCDTILY---------DLNLWISRPFLRCRREDIRSFLLQRNIS 187 MR R +GL+GM + L + RP L+ ++D+ + + Sbjct: 121 MRLARSSGI--IGLAGMASRSYFFSRRPVSQDQTGLLLVRPLLQFSKQDLYTVCKKAGQE 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 W EDP+N + +F R R+R+ + D ++ + + R ++ L+ K +T Sbjct: 179 WIEDPTNFNHKFARNRIRQVLADPLYDDARRQIHPLIAACRQTRAMLDRERDGLLAKIVT 238 Query: 244 VHMR-SIIAISQDIL---NIDSTLLFY----LLRVSAAICGGQISLPGYRSMERVMLFLK 295 + I+I D+L NI +L +L+ + + P ++++ M L+ Sbjct: 239 ISKDFGYISIDVDLLASSNISDAVLGRVVVAVLQARSQFVAQREKPPRGKALKIFMDKLR 298 Query: 296 SGK-RGCVSIGRV 307 ++ Sbjct: 299 QPSFNEAFTLAGC 311 >gi|296131746|ref|YP_003638993.1| tRNA(Ile)-lysidine synthetase [Thermincola sp. JR] gi|296030324|gb|ADG81092.1| tRNA(Ile)-lysidine synthetase [Thermincola potens JR] Length = 471 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 116/308 (37%), Gaps = 26/308 (8%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V+ V + L ++V VSGG DS+ L L + + ++ ++H R Sbjct: 3 EKVKATVIKYKMLEPGDKVVVGVSGGPDSVALAHILTRLAKE---FRLTIHIGHLNHMFR 59 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTIN 118 A+ + V+ + +L + +V S+ + A AR RYA + A + Sbjct: 60 GKEAELDAASVARLAEKLGLPCTVERIDVPAYLSEHRVSAQAGARYIRYAFFEKLADEVG 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I T H DDQ ETV M R GL+G+ RP + R++I Sbjct: 120 ANRIATGHHADDQAETVLMNFLRGSGV--SGLTGIPPVR----QGKYIRPLIEVSRQEIE 173 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ ++ D SN + + R RVR F++ + + +F ++ N + Sbjct: 174 NYCRYFDLPVRFDASNAKNIYLRNRVRNQLIPFLQKEFNPKIVQTIARFSEIARDDNEFI 233 Query: 235 AMLIPKY-----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 K + I + +L + G Y ++E Sbjct: 234 CREAEKAWQLLGVEERTEEIRFELDRFWEWPRAVQRRILIKAWEAVTGSARDIMYTNIEN 293 Query: 290 VMLFLKSG 297 ++ FLK+G Sbjct: 294 LLEFLKTG 301 >gi|296111610|ref|YP_003621992.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154] gi|295833142|gb|ADG41023.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154] Length = 435 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 120/300 (40%), Gaps = 20/300 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I + ++ + ++VAVSGG DS+ LL AL + K V++ LRE Sbjct: 2 INKIEKQLKKYKWGDTVIVAVSGGVDSVVLLHAL-----RQQLPTAKLVIAHVNYHLREE 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + +V + + + + +W + P + + AR+ RY + A + I+ A Sbjct: 57 SDADEVFVRRLAEKYQAVFEMTTWSDI-PSNSVESKARQLRYLFFEKLAYQYHTETIVVA 115 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ETV ++ R L+GM N I+RPFL ++++R + Sbjct: 116 HHADDQAETVLLKLVRGGQV--SQLAGMDS-----QNSHITRPFLCITKQELRHYAQDNE 168 Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 ++W +D +N D + R R + + D ++ + A++ + Sbjct: 169 LTWRDDKTNADPLYTPRNFFRNQIIPELKTINPQAVAHINDFAKQIQDQNALITAQTDIY 228 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + I +I L ++ G I + ++ L++ ++ ++ Sbjct: 229 VQQ----IENHWQSIPPIWLEQTIKRFIQKKG--IYQFKQVQISQIRHLLENKQKPIGTV 282 >gi|308272159|emb|CBX28766.1| hypothetical protein N47_L13640 [uncultured Desulfobacterium sp.] Length = 490 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 133/341 (39%), Gaps = 22/341 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ ++ + ILV VSGG+DS+ L+ L+ + +K ++H Sbjct: 12 FMQKVKKTVAEYNMIQNKDCILVGVSGGADSVTLIHVLYEIAP---IFSLKLGIAHLNHS 68 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKT 116 LR+ + D+ +V+ + +L + + +K +T + A R RYA + A Sbjct: 69 LRKNESDDDAGFVNALSKKLNLPCFIEKKDVTKYKTENKLSVEEAGRRMRYAFFEDIAIK 128 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRRE 175 I HT +D E V M R +G+SG+ NL I RP ++ R Sbjct: 129 EGFNKIALGHTANDNAELVLMYLLRGSGP--LGISGIPPLRGGLKNNLLIIRPLIKTLRP 186 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLH---ALYLKMKKFQDLRVKVN 231 +I ++ + +S D SN D+++ R ++R + ++ + + + + + N Sbjct: 187 EIEGYISCKGLSHIIDKSNMDEKYLRNKIRHNLIPHLNKNYNSKIVETLNRLASIVRSEN 246 Query: 232 NAVAMLIPKYLTV-----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + + I+ +I + + R++ G + Sbjct: 247 EWMEEELAADIKKTIIKEEPDKIVCSVSEIKALHPAARNRISRIAILKVKGDLRRISLSH 306 Query: 287 MERVMLFLKSG-KRGCVSI-GRVVIDRRANFLWITRAVRNL 325 +E + L+S + + R+ + R L I++ L Sbjct: 307 IELMSAQLESDSDNWSLDLPDRIRVTRTGESLVISKGKSAL 347 >gi|170727604|ref|YP_001761630.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908] gi|259533759|sp|B1KNS7|TILS_SHEWM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|169812951|gb|ACA87535.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908] Length = 470 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 19/323 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 A +++A SGG DS L L L +S + ++ + V H L A V + Sbjct: 24 GAKLVLAYSGGVDSEVLAQGLS--LYAKSHPEFRYLLVHVHHGLSRNADAWVTHCQKQAL 81 Query: 79 RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ VV + P+ + A AR ARY I+ + A +++TAH DDQLETV + Sbjct: 82 DYQLPIEVVQVQVKTGPRLSIEAEARRARYKAITSLMDS--ADVLLTAHHLDDQLETVLL 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +R KG LS M ++D + + RP L RE I + ++ ED SNTDD Sbjct: 140 ALKRGLGPKG--LSAMGALQVFDGDKQLLRPLLNVSREQIEAKAASLSLPHIEDESNTDD 197 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250 +++R +R + L + + + + +I ++ + + I Sbjct: 198 KYDRNFLRLQIIP-KLKSRWSAIATTASRSAALCAQQQAVIDDEVSARLPNFIELVPYGE 256 Query: 251 --AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGR 306 A++ D+L+ + LL G + + + + K V I Sbjct: 257 GTALNLDLLSHQTPNWQALLLRGYIESSGFAPVSQIQLEQLLSQLLTAKPDANLEVRIAD 316 Query: 307 VVIDRRANFLWITRAVRNLPTLI 329 +++ R +++ + P + Sbjct: 317 MLVRRFREKAYLSSYRPHKPKSL 339 >gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28] Length = 275 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 17/262 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A E R V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + Q GL AR RY + N ++ AH DDQ+E Sbjct: 77 ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I + + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 NT + R R R + + A+Y ++F + + + + L+ K L + Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253 Query: 247 RSIIAISQDILNIDSTLLFYLL 268 + + N + L + Sbjct: 254 KQTTLLLSSFKNEANPLQRRAI 275 >gi|311087577|gb|ADP67656.1| cell cycle protein MesJ [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 398 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 19/323 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA SGG DS LL +L + IK AI ++H L +K + +C+ I Sbjct: 15 LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + L R RY +I H +++T H +DQ ET ++ +R Sbjct: 72 PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FYDEILLTGHHINDQCETFFLSLKRG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLS M L+ I RPFL+ + +++++ ++ + W ED SN + ++R Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257 +R V I +K + + L+ +L + +I ++ Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314 NI + L+R + +I +P Y++++ R M+F + + +G+ + R Sbjct: 246 NIKQEMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303 Query: 315 FLWITRAVRNLPTLILYPEETTV 337 L + +L +L+ + + Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326 >gi|297582401|ref|YP_003698181.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10] gi|297140858|gb|ADH97615.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10] Length = 475 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 123/309 (39%), Gaps = 25/309 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + H+LVAVSGG DSM LL LH R+ I SA+ H LR E+A + Sbjct: 13 RLIQAGDHLLVAVSGGVDSMVLLHLLHE---RRTRLSITLSAVHAHHHLRRESADRDAEL 69 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTF 128 V+ C L I +V + + + A AR+ RY A ++TAH Sbjct: 70 VASFCRELAIPFHLVHLSVEEERKLRNGSVQAVARDLRYEAFRHVMTETGANRLVTAHHG 129 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ+ETV ++ R+ A+ G G+ + + RP L + + + I + Sbjct: 130 DDQIETVLLQLLRNTAQGGSGMRALRPI----EGGTLIRPLLDTEKASLYRYAKDSGIPF 185 Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-- 243 ED SN + R R+R+ + + + ++ ++ ++ + R ++ + L + L Sbjct: 186 REDESNDSRHYRRNRIRQDILPVLKEEHPGIHRQIGRYTEERQTESDYLDHLADEMLQEP 245 Query: 244 -----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS---LPGYRSMERVMLFLK 295 + + + S L + + + R++E+ + + Sbjct: 246 SFSLMMKESGLQFSRPAFQRLPSALQKRAVHLLLTYLSEHLRIRVAHNRRNLEQAVAVIC 305 Query: 296 SGKRGCVSI 304 K + Sbjct: 306 GEKPNAAAF 314 >gi|147676532|ref|YP_001210747.1| ATPase [Pelotomaculum thermopropionicum SI] gi|146272629|dbj|BAF58378.1| predicted ATPase [Pelotomaculum thermopropionicum SI] Length = 473 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 26/315 (8%) Query: 3 LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 +S + VR + R + +LVAVSGG DS+ LL AL+ + + I ++ Sbjct: 1 MSLLHKVRENICRHRMVERGCKVLVAVSGGPDSVALLHALYLLKEELE---ISLHVAHLN 57 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114 H R ++ E +V+D+ R + +V V + AAARE R+ SE A Sbjct: 58 HMFRGAESEAEALFVADMARRYGLPATVEARDVPAYQKQSGLSAQAAAREVRFRFFSEAA 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 A+ + AH DDQ ET+ + R GL G+ + RP L RR Sbjct: 118 GKAGASRVALAHHADDQAETILINFLRGAGI--TGLKGISPVRE----GFYIRPLLTVRR 171 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKV 230 +I + + + +C D SN + R RVR + + AL + + ++ + Sbjct: 172 AEIERYCKEMKLPYCRDSSNLKAVYTRNRVRLELIPLLEKEYNPALVPTLLRLGEICREE 231 Query: 231 NNAVAM----LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYR 285 + +A L + + + D + + +++ + G ++ Sbjct: 232 DAYLAEQAVKAFQAVLREKVSGRVVLRLDAFKQMPPAIRRRVVQQAWRSLTGAEENLAFQ 291 Query: 286 SMERVMLFLKSGKRG 300 +E V+ ++ G G Sbjct: 292 HVEAVLDLIQKGGTG 306 >gi|225016525|ref|ZP_03705717.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum DSM 5476] gi|224950754|gb|EEG31963.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum DSM 5476] Length = 445 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 131/353 (37%), Gaps = 35/353 (9%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 + S++ V SL I+V VSGG+DSM LL AL + A ++HCLR Sbjct: 1 MNSIQIHVSSLFSEGDRIVVGVSGGADSMALLHALRHCGK-----PLHLVAAHLNHCLRG 55 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 E ++ + ++V C I + V+ K L RE RYA E Sbjct: 56 EESERDEQFVVGYCKEHGIPCEIRQIDVAAAAKKSGQSLELCGRELRYAFFEELCGEQG- 114 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I TAHT D+ ET+ R + G+ + I RP R +I + Sbjct: 115 -FIATAHTLSDRAETLLFNLARGSSPAGL-------CSIPAQRGRIVRPLSPFTRGEIEA 166 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + + I + D SN D + R R+RR + AL +F+ + +++A Sbjct: 167 YCKEYRIPYQIDSSNLSDDYARNRIRRH----AVPALVSVNCRFERHAAALMDSLAQDQN 222 Query: 240 KYLTVHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + +D + + + +LR+ QI + + R++ Sbjct: 223 YLEQQASAAYERAERDGRLDARQVARLHPAIQGRVLRLFLE--SHQIEV-SAALVARLVQ 279 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD-GRYQF 344 + G G ++ R FL I + P + + D G ++ Sbjct: 280 LCRDGAGRQSVPGNRLVQLRKGFLEIVVPLDRPPYFEYLWDHSEQCDLGGFRI 332 >gi|188577760|ref|YP_001914689.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522212|gb|ACD60157.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 434 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 134/355 (37%), Gaps = 19/355 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L++ +V + + GL AAAR AR+ + + AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R +G+ + + RP L R D+ ++ L + + W EDPSN Sbjct: 127 LLRALRASGPEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252 D R +R +R V + + +A A+L+ + + + + A+ Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAVDALARSAQLSADASALLLQQDMALLPSVCTASGAL 243 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310 L L + LP ++ER + + ++ C + +V + Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 R L++ R PT + WDG Q + +++ + + P Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353 >gi|227432630|ref|ZP_03914606.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351600|gb|EEJ41850.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 435 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 27/297 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + ++ +P ++VAVSGG DS+ L+ AL K V++ RE + Sbjct: 8 EKILQTIKQYNWPETVIVAVSGGVDSVVLVHALSK-------TKANLVIAHVNYRFREES 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D+ +V + ++ W++ P + AAR+ RY E A+ + I AH Sbjct: 61 DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R + MG N + RPFL ++++ ++ + Sbjct: 120 HADDQAETVLLKMIRGGRLQQMGGMQTK-------NHKVIRPFLSITKQELITYAQDNQL 172 Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 W +D +N D + R +R V L L ++ +NN A ++ + + Sbjct: 173 GWRQDKTNFDVDYTPRNLLRNDV----LPKLTTINQR---AVRHINNMAAQILQQQRLID 225 Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 ++ I + QD I + L+ L + + ++ +++++ L + + Sbjct: 226 NQAKIYANDIQDWQKIPT--LWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKP 280 >gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101] gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101] Length = 436 Score = 210 bits (534), Expect = 5e-52, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 116/315 (36%), Gaps = 33/315 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + + +AVSGG DSM LL + + + + + LR + + ++ Sbjct: 15 FLKQKKLFLAVSGGLDSMVLLHLFKQL-------NYEITVLHCNFQLRGLESFGDQEFIQ 67 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C + I + + + AARE RY+ E + + ++TAH DD Sbjct: 68 NYCDKNNIKIFTTQFDTQAFAEDYKLSIQVAARELRYSWFYELLEEKHFDYLLTAHHADD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G+ T + + N I RP L RE+I + + NI W E Sbjct: 128 NLETFIINLTRGTGLDGL-------TGIPEQNDKIIRPLLPFSREEILKYAQENNIEWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDI------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 D SN ++ R ++R + + + + K + F ++ +++I + + Sbjct: 181 DSSNASTKYVRNKIRHDLVPVLKQINPNFLDAFQKTQSFLQESKEMVEDASIVIYQQVAK 240 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I + L YL + G+ + + + ++ V Sbjct: 241 EAGDDIHFDLNQLKKLPNYKSYLYQWLNEF--------GFSAWKDIYDLVEGQSGKQVFS 292 Query: 305 GRVVIDRRANFLWIT 319 + + L +T Sbjct: 293 DEFRLLKNREILILT 307 >gi|323465808|gb|ADX69495.1| tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus H10] Length = 418 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 21/311 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V +LVA S G DSM LL L ++ + K A +H LR +++E + + Sbjct: 14 VTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRADSEEESKLLKKY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 CS + + W K +P+ G+ AAAR ARYA +++ AK NA ++TAH DD LE + Sbjct: 71 CSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M M + + + RP L + ++ + + I + D +N Sbjct: 131 LLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQ 187 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R R+R V + L + + + + LI + Sbjct: 188 ADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---------YVDEKNS 234 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 + + L R+ + +R M++ K +R ++G V+ N+ Sbjct: 235 AMGQLESFLNVAYRIKSEALSQLTEKERIFFWQR-MIWQKYHRRVNENLGNFVVMEYQNY 293 Query: 316 LWITRAVRNLP 326 ++ + L Sbjct: 294 FYLYKKQNILE 304 >gi|259907561|ref|YP_002647917.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96] gi|224963183|emb|CAX54667.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96] gi|283477401|emb|CAY73317.1| cell cycle protein [Erwinia pyrifoliae DSM 12163] Length = 433 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 83/360 (23%), Positives = 143/360 (39%), Gaps = 30/360 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R ++ A+ + H L + Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PHLQLRAVHIHHGLSQL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A D + C R ++ VV + G+ AAAR+ARY + EH I ++TA Sbjct: 59 ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREHL--IAGETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ +L RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ++W ED SN D R++R +R V + L + F + + Sbjct: 174 LNWIEDDSNQDARYDRNFLRLQVMPL----LNQRWPHFASAVARSAQLCGEQERLLDELL 229 Query: 246 MRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--- 294 S+ A+ + +L + LLR A G+ +P +++R+ L + Sbjct: 230 SESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGR--MPSRAALQRIWLEVASS 287 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 ++ + IG + R + L+ LP L+ W +Q L D L Q+ Sbjct: 288 RADAEPRLRIGGNEVRRFRDRLYW------LPQLLPLGASQLAWPAPWQPLTLPDGLGQL 341 >gi|262281027|ref|ZP_06058810.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202] gi|262257927|gb|EEY76662.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202] Length = 467 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 30/334 (8%) Query: 10 RFFVRSLVYPAHI-------LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 R F +++ A + L+ SGG DSM LL + + + AI +DH L Sbjct: 14 RKFRHNVLKQAQLFSENSSFLIGCSGGMDSMLLLHLISQIFPQK------IRAIYIDHQL 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + V+ +RL I + + + + L A AR+ARY +H + ++ Sbjct: 68 QSQSAEWGKLVAKQATRLDIPYIIQKVQVAD--GNLEAQARQARYQAYRQHLQPN--EIL 123 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH DQ ETV +R G+ +I Y +++ I RPFL RE I + Sbjct: 124 VLAHHQQDQAETVMLRLLSGAGVDGLAAM---QSIDYRVDMTIWRPFLDLTREQIADWTT 180 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 Q I + DP+N D ++R R + L + KM++ + + ++ + L Sbjct: 181 QLEIEYVNDPTNYDIHYDRAWSREELWP-FLQKRFPKMQQALSRTSYLMQDASEILEEVL 239 Query: 243 TVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLK 295 V ++ +L++ + LL S + G P + +ER+ ++ K Sbjct: 240 IVDLKHCGTAECLDLTKLLDLSAARQRQLL--SVWMKGNGQYRPAFEMVERLKNEVIDSK 297 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329 S + + + R N L+ L + Sbjct: 298 SDAQAALHWNQFYYVRYQNHLYRLSKQAFLAETL 331 >gi|124006425|ref|ZP_01691259.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla marina ATCC 23134] gi|123988082|gb|EAY27753.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla marina ATCC 23134] Length = 450 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 122/318 (38%), Gaps = 37/318 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78 +IL+AVSGG DS+ L + S + + + LR ++++ +V + Sbjct: 19 DNILLAVSGGIDSVVLTDLFAQIKS-----HGQVAIAHCNFQLRGVASEEDEEFVKQLAQ 73 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I V + + + AR RYA + + TAH +D +ET Sbjct: 74 HYGIPCFVTRFDTYTLAQAQKGSIQMIARNLRYAWFEQLRTKEGYHYLATAHHQNDMVET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R GL G+ I RP L RE+I ++ ++ + WCED SN Sbjct: 134 VLLNLVRGTGI--AGLHGIKVK-----QGHIIRPMLFASREEIEAYAQEKGLKWCEDASN 186 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-----VHMRSI 249 D+++ R R+R V + L + ++K + V+ +AV + + + Sbjct: 187 QDNKYYRNRLRNEVIPV-LKTMNPNLEKTLEQSVEKISAVERFFEAEVQHIETTLMTSTT 245 Query: 250 IAISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + D+ ++ +L+++L+ Y + ++ + Sbjct: 246 ETVFLDLKKLEPIDEKLIILYHILKKFGF---------SYIQTQDILAGITGESGKQFLS 296 Query: 305 GRVVIDRRANFLWITRAV 322 V+ + N L IT A Sbjct: 297 PTYVLVKDRNKLVITPAR 314 >gi|253572641|ref|ZP_04850042.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6] gi|251837773|gb|EES65863.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6] Length = 426 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 26/266 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + IE F +LVA+SGG+DS+ LL LH+ + A + L Sbjct: 7 IRYIEKEHLFS----PDDKLLVALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + + ++V +C + I + + ++ + + AARE RY + + Sbjct: 56 RGEESNRDEQFVRQLCQKYGIRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A +I AH DD +ET+ + R G+ + N I RP L RE+I Sbjct: 116 GAHVIAVAHHQDDSVETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +L Q + D +N +D + R ++R + + + + +N+ + Sbjct: 169 IRYLQQIGQDFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSIHLNDVATIY 228 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTL 263 + I+ + + ID+ L Sbjct: 229 NK---VIDEAKTRIITPEGIRIDALL 251 >gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1] gi|61216741|sp|Q9HXZ3|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Length = 442 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|150392226|ref|YP_001322275.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF] gi|149952088|gb|ABR50616.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 120/315 (38%), Gaps = 25/315 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M E+++ + L ++VA+SGG DS+ LL L + + K++ ++H Sbjct: 1 MLDQVQETIKKY-NLLETGDKVVVAISGGPDSVCLLHVLSRLKAA---YKLEIYGAHLNH 56 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 R A+ + +YV++ C +L I V S K A R RY E + Sbjct: 57 NFRGMDAQMDAQYVANFCEQLNILCFVKSMDVLGYAEKNGLSSEEAGRVLRYEFFEEIGQ 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + A+ I AH +DQ ETV MR R +G+ T + I RP L R Sbjct: 117 KVGASKIAVAHNQNDQAETVLMRLLRGTGIQGL-------TAIRHKRDKIIRPLLETDRG 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLR 227 I + +S D +N+ + R ++R + + L+ + + Sbjct: 170 KIEDYCETYELSPRIDQTNSQPIYHRNKIRLELIPYLKENYNPNIIEGLHRTAEILKLDN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + + +S + I + +L L+R + G Y+ Sbjct: 230 EYMEEETKRAFEQVCFSQGEHCLELSVKGITPLHLSLKNRLIRYTIERLIGSGENFEYKH 289 Query: 287 MERVMLFLKSGKRGC 301 ++ V+ L++ G Sbjct: 290 IQSVLHLLENETTGK 304 >gi|326794452|ref|YP_004312272.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1] gi|326545216|gb|ADZ90436.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1] Length = 431 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 137/335 (40%), Gaps = 15/335 (4%) Query: 6 IESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCL 62 + +++ F+ R I VA SGG DS LL + S L + + I+ SAI V H + Sbjct: 8 LNALKQFLPRENNRAVTIWVAYSGGLDSEALLHLVASELESIESLYKGIRLSAIHVHHGV 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E A V + C+ L I V AAREARY + +H + ++ Sbjct: 68 SEHADSWVEHCKTSCAALGIPLIVEKVVIEGV-ASFENAAREARYEVFRKHLQMN--DIL 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH +DQ ETV R +R KG+G G+ + + I RP L C R I + Sbjct: 125 LQAHHANDQAETVLFRLERGTGLKGLG--GIPSSRPLA-DAIIYRPLLNCSRFHIEQYAY 181 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 N+ W ED SN D + R +R V + + + +++ K V+ L+ Sbjct: 182 SCNLKWIEDESNQDQAYRRNFLRHSVINPWQNNNPDISIRLAANASRIQKEWQVVSRLVG 241 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + L ++ ++L D Y + + P +++ MLF GK+ Sbjct: 242 QALNSMCNDDGSLDLNLLPEDE--QSYWISAYLNKKNISFTSPQTQALMG-MLFSNVGKQ 298 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 + RRA+ L++ R L P E Sbjct: 299 PEYVGAYFRLARRAHRLYVLPLDRAPLLGKLTPNE 333 >gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052] gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052] Length = 468 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 24/285 (8%) Query: 1 MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M+ + ++ +L+ P IL+A+SGG DS+ LL L + R I +A ++ Sbjct: 1 MYRKVLSYIKD--NNLIKPNDKILIALSGGPDSICLLNVLFEL---REKLNISIAAAHLN 55 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 H LR E A ++ RYV + C+ + I V + + + A R ARY E Sbjct: 56 HLLRGEDAFEDERYVINTCNDMGIKCFVKRVDINAYSKESKLSSEMAGRNARYDFFDEIL 115 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + I TAH +DQ ETV R R +G+G I + I RP L R Sbjct: 116 EKEGFNKIATAHNANDQAETVLFRLMRGTGLEGLG------GIRASRDDKIIRPILCLSR 169 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKV 230 E++ +++ +N++ D +N + + R ++R + ++ + + + L K Sbjct: 170 EEVENYVKLKNLNPRIDKTNFEKIYNRNKIRLDILPYMKENFNEDIVQTLNRMSTLLQKD 229 Query: 231 NNAVAML---IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 N + L + + I ++I + L+ +LR + Sbjct: 230 NEFLEKLSAGLYNKYCMECNDYFIIKKEIFKEEEPLVNRVLRHAL 274 >gi|333031348|ref|ZP_08459409.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011] gi|332741945|gb|EGJ72427.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011] Length = 431 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 38/329 (11%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 ++L A I+V +SGG+DS+ LLI L + A + LR E A + Sbjct: 13 KNLFTKADKIIVGLSGGADSVALLILLKDL-------GYSCIAAHCNFHLRGEEADRDED 65 Query: 72 YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V +C +L I + + + + AARE RY K NAT + AH Sbjct: 66 FVVQLCKKLDIKLRSTHFDTYKYAADHKLSIEMAARELRYNWFERLCKEENATKVAIAHH 125 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + R KG+ T + N I RP L R++I FL R Sbjct: 126 RDDNVETLLLNLIRGAGLKGL-------TGIQPKNGNIVRPLLTISRKEIVFFLQSRQQD 178 Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + D +N +D F R +VR + L+ + ++ +++ +++ I + Sbjct: 179 FVTDSTNLEDEFARNKVRLNIIPTMEQINSACLNNIQNTIEYLNQVQLIYTQSISNSINR 238 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 V +II + + + + Y + + ++ + + S + Sbjct: 239 ---VKSENIIDGGKLLKEVSPETILYEICYPLGFNS--------KQIQDIFESISSNESK 287 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLI 329 + + + + + I + I Sbjct: 288 EFHSEQYYLIKNRDRIIIYSKETDHKECI 316 >gi|20808759|ref|NP_623930.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|61217386|sp|Q8R7K9|TILS_THETN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|20517403|gb|AAM25534.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 467 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 116/306 (37%), Gaps = 26/306 (8%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 IE V + + I++ +SGG DS+ +L L ++ + +K + V+H + Sbjct: 11 IEKVLRTIEKYNMIEKDDKIVMGISGGPDSLCMLDVLFNL---KGKFNLKLYVVHVNHMI 67 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R E AK + +V +C L + + + + K A R RY E K + Sbjct: 68 RGEDAKKDAEFVEKLCKDLDLPFFLFEENIPYLAKKMGLSEEQAGRYVRYKAFEETLKRV 127 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I AH +D ETV + R +G+ + +N I RP + R +I Sbjct: 128 GGNKIAVAHNKNDVAETVLLNILRGTGLRGL-------IGIKPVNGNIIRPLIEIERREI 180 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAM 236 +L +N+ D +N +D + R ++R V + + + + + Sbjct: 181 EKYLKDKNLHPRIDHTNYEDLYTRNKIRLKVIPYIEEVFKIDLVENLSRMAAILLEEDDY 240 Query: 237 LIPKYLTVHMR------SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 L K V + I + D L + + + L+R G+ Y +E Sbjct: 241 LEAKCEEVFNQICEINGEEIKVDVDALKSQHTAIKRRLVRRMYFYVKGETDGLEYGHVED 300 Query: 290 VMLFLK 295 V+ L Sbjct: 301 VLNLLD 306 >gi|238917789|ref|YP_002931306.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750] gi|238873149|gb|ACR72859.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750] Length = 486 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 22/269 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 I+ + ++ L ++V +SGG+DS+ LL+ L + R + + A+ V+H Sbjct: 3 EIIDKIYRYIEQNNMLTDCERVVVGLSGGADSVCLLMVLKGYIERRRL-QTELCAVHVNH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116 +R+ A D+ + +C R+ + + + A R+ RY + +E K Sbjct: 62 GIRQEAGDDEEFARALCERMGVEFMAYHIDAAGLAKQLGMSVEEAGRKERYRIFNEACKG 121 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 NA I AH +DQ ETV M R + KG+G + + I RP L R + Sbjct: 122 RNAR-IAVAHHMNDQAETVLMNLSRGTSLKGIG-------GIRPVRDNIIRPLLSVTRAE 173 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + L N + D +N + + R +R V Y+ K + +A Sbjct: 174 VEEVLKDFNQPYVTDATNLCNDYTRNSLRNVVIP------YMTEKVNAHTVENIADAAEE 227 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLF 265 L + + + A + + D+ +L Sbjct: 228 LQKNFDFIEAEAKKAYDKHVYVGDTVVLR 256 >gi|332830557|gb|EGK03178.1| hypothetical protein HMPREF9455_00748 [Dysgonomonas gadei ATCC BAA-286] Length = 438 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 41/326 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +S +E L I+V VSGG+DS+ LL LHS ++ + Sbjct: 1 MDISRVEQYIVANGLLAGGEKIIVGVSGGADSIALLDILHSF-------GLECVVAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 LR E + + +V ++C + + + + + + AARE RY + Sbjct: 54 HLRGEESNRDAFFVEELCKKYNLKYERIDFDTEAYAAINSVSIEMAARELRYNWFEQLRV 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A I AH DD +ET+ + R +G+ T + +N ++ RP L R+ Sbjct: 114 IHMADKIAVAHHRDDSVETILLNLVRGTGIRGL-------TGIAPVNGYVIRPLLCVSRD 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I +L +R +S+ +D +N +D + R ++R V + L A+ K+ + + VA Sbjct: 167 EIIEYLKERRMSFVDDSTNNEDMYARNKIRLNVIPM-LEAINPSAKESINKTAEHLTQVA 225 Query: 236 MLIPKYLTVHMRSIIAISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSM 287 + Y+ +I A + +NI +LF LL ++ Sbjct: 226 NIYYMYMAQVKANIFA--DNKINISMLVQYLEPEAILFELL---------SPYGFNSATV 274 Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDR 311 R+ + +SGK ++ DR Sbjct: 275 RRIFESVISQSGKIFYSETHELLKDR 300 >gi|255008100|ref|ZP_05280226.1| putative cell-cycle protein [Bacteroides fragilis 3_1_12] gi|313145817|ref|ZP_07808010.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12] gi|313134584|gb|EFR51944.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12] Length = 431 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F +LVA+SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLF----YLNDKVLVALSGGADSVALLRLLLSM-------GYTCEATHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C + V + + + AARE RY K A Sbjct: 59 ESDRDEAFVRQLCHEAEVPLHTVHFDTIQYAADKHISIEMAARELRYEWFETLRKQRGAA 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ETV + R G+ + N I RP L R++I ++ Sbjct: 119 VIAVAHHKDDSVETVLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLSRDEIITY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + N + D +N D + R ++R + + ++ D N Sbjct: 172 LQRMNQDYVTDSTNLLDDYTRNKIRLNLLPLMQEINPSVKESIIRTTNYLNDTATLYNKG 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF LL Sbjct: 232 IEEARTRVLTSEGIRIEALLQEP--VPGAILFELL 264 >gi|302388372|ref|YP_003824194.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1] gi|302199000|gb|ADL06571.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1] Length = 458 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 31/346 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M+ + ++ +R R ++VA+SGG+DS+ LL+ L+ + + A+ V H Sbjct: 1 MYRTILDYIRR-NRLFAPGDRVIVALSGGADSVCLLVVLNELKEELGLEL---KAVHVHH 56 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115 LR A + Y D+ +RL ++ S V + + + A R RY + + Sbjct: 57 GLRGKEADRDRDYSRDLSARLGVSFSCVQVDAALYAGEHGMSVEEAGRHLRYQIFEKERL 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + T I AH DDQ ET+ R KG+G L I RP L RE Sbjct: 117 DFSGTKIAVAHHRDDQAETILYNLFRGTGLKGLGGM-------RPLRDRIVRPLLCVGRE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK----MKKFQDLRVKVN 231 +I ++L ++ IS+CED +N + R R+RR + + + + ++ + + Sbjct: 170 EILAYLEEKRISYCEDSTNAQTDYVRNRIRRRILPEIREEVNRRAGENILHAGEMAAQAD 229 Query: 232 NAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVSAAICGGQISL 281 + K L + S +L D+ + Y++R + Sbjct: 230 AYLEKQAEKILKARGVGEMEASGLRPACGIDAAVLLAEDNIIRNYVIRRMIRSVNESMKD 289 Query: 282 PGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLP 326 +E L R V + ++ R LWI R + P Sbjct: 290 ITMTHVESAAALLFGSDRRQVDLPCGLIAVRTNGELWIKRKEQEEP 335 >gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 442 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|227544681|ref|ZP_03974730.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A] gi|227185327|gb|EEI65398.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A] Length = 470 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 133/308 (43%), Gaps = 23/308 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 14 FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHE 66 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C + + +V W ++ PQTG+ AAR+ARY E K A+ Sbjct: 67 LRKQSELEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQAS 126 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 127 ILLTAHHQNDLAETMLMKMARGGQL--SQLVGIRDWRPFASG-TLIRPLLPFSKQQLKKY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233 LQ ++ W ED +N D +R R R + + + + ++ + Sbjct: 184 ALQHHLKWYEDKTNKDLSIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLAWRDQE 243 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 VA + + R I+A +L + +LR G I + ++ ++ Sbjct: 244 VADQLAACVDQQGRMILA---RLLQNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLQI 298 Query: 294 LKSGKRGC 301 L++ ++ Sbjct: 299 LENEQKPQ 306 >gi|119477118|ref|ZP_01617354.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143] gi|119449481|gb|EAW30719.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143] Length = 446 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 25/338 (7%) Query: 2 FLSPIESVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ + F+ + P LVA SGG DS LL L V A+ Sbjct: 3 FILAMPITERFLNQQLNPYTEAGRWLVAYSGGVDSCVLLDCLIGVAD-----HPPIVAVH 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKT 116 ++H L+ ++ ++ + L IA + L AAR ARY + Sbjct: 58 INHQLQAASEQWRKHCEKRAAALNIAIICIDVDVDLHSGRSLEDAARVARYDAFETIVR- 116 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++ H DDQ+ET+ +R R +G + + ++RP L R Sbjct: 117 -HDDVLFFGHHLDDQVETMLLRLLRGSGSRGAAAMPSSRAL---GSGQLARPLLDIPRSA 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I ++ + W +D SN F+R +R V + ++ +N A Sbjct: 173 IETYATINQLEWIDDSSNQSLDFDRNFLRLEVLP-AFEQRWPGYRQTLSRAALLNEEAAG 231 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR------VSAAICGGQISLPGYRSMERV 290 L + + ++ + SQ + LL L R + + Q++ P + V Sbjct: 232 LNDELAAIDLQQMGVSSQSSATLPIELLSRLSRPRQKNSLRYFLKLNQLATPSSAQLNEV 291 Query: 291 MLFL---KSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 + L + V G V + R + + R + + Sbjct: 292 IDQLLGARIDATPLVEWGDVQLRRFGDKVVAMRRMSPM 329 >gi|150025676|ref|YP_001296502.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86] gi|149772217|emb|CAL43693.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86] Length = 434 Score = 209 bits (533), Expect = 7e-52, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 33/315 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + +L+A SGG DSM +L + + + LR + + ++V Sbjct: 15 FLKEKKLLLATSGGIDSMVMLHLFQKL-------NYNIAIAHCNFQLRGLESFGDQQFVQ 67 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + S+ +I V + + AARE RY E +T N I+TAH DD Sbjct: 68 EYASKNKIPAFVTHFDTENFAKDYKLSTQIAARELRYNWFYELLETENFDFILTAHHADD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G+ T + + N I RP L R +I + + +I W E Sbjct: 128 NLETFIINLTRGTGLDGL-------TGIPEQNEQIIRPLLPFSRSEIEEYTKENSIQWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D++ R ++R + I L + F D +K N + + + + I Sbjct: 181 DSSNASDKYLRNKIRHDLIPI----LKVLNPNFLDSFLKTQNY----LQEAQVMIEDATI 232 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISL------PGYRSMERVMLFLKSGKRGCVSI 304 I Q + D+ ++ + L+ + + L + + E + ++S + Sbjct: 233 MIYQQVAKEDNEIISFDLKKLTQLPNYKSYLYQWLREYDFTAWEDIYNLVESQSGKQIFS 292 Query: 305 GRVVIDRRANFLWIT 319 + + + +FL ++ Sbjct: 293 KKYRLLKDRDFLILS 307 >gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2] Length = 442 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 124/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLVQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ ++ + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRSL---GGGRLCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|160894589|ref|ZP_02075365.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50] gi|156863900|gb|EDO57331.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50] Length = 485 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 127/329 (38%), Gaps = 40/329 (12%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E + F++ L + +V VSGG+DS+ LL L + R ++K A+ V+H +R Sbjct: 8 EQIYQFIKEQNLLEAGDNCIVGVSGGADSICLLTVLAGL---REKIELKLYAVHVNHMIR 64 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 A + YV++ C +L I + + A R ARY + A Sbjct: 65 GTEADADESYVAEYCKKLGIPCDCYHIDVPQLAKEQKLTEEEAGRNARYGAFARAADKYG 124 Query: 119 AT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 T + AH +D ETV + R G G++GM + I RP L C R + Sbjct: 125 ITDYKVAVAHNKNDVAETVLLNMVR-----GTGIAGMAGIPVKRD--RIVRPLLSCTRTE 177 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I ++L Q+ I +C D +N ++ + R ++R V + ++ + A A Sbjct: 178 IEAYLEQQGIQYCTDSTNLENDYARNKIRNQVIPA-----FNEINTQAAAHISQAAAYAG 232 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + Y+ + + +I Y+L + E + + Sbjct: 233 MYDTYVMKQVGYFLDEHMEIRKQTGKTDAYVLEIGKL----------REQDELIEDLVIL 282 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNL 325 G VS GR I + R V+ L Sbjct: 283 ELIGRVSGGRKDIGQNH-----VREVKKL 306 >gi|295134680|ref|YP_003585356.1| PP-loop family protein [Zunongwangia profunda SM-A87] gi|294982695|gb|ADF53160.1| PP-loop family protein [Zunongwangia profunda SM-A87] Length = 437 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 67/315 (21%), Positives = 126/315 (40%), Gaps = 39/315 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78 A +++AVSGG DSM L+ V K+ F+ + LR+ + + +V Sbjct: 19 AKLILAVSGGVDSMVLMRLCKKV-------KLDFAIAHCNFNLRDNESDGDEEFVVRAAQ 71 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + + + + + + AARE RY E NA I+ AH +D LET Sbjct: 72 NLELKVHIQHFNTISFAEEHKLSIQMAARELRYHWFEELRIAENADYILVAHHANDSLET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R +G+ + N I RP L+ R++I ++ I W ED SN Sbjct: 132 FLINFVRSTGPEGLA-------GIKAENDKILRPLLKFSRQEIENYARDHQILWREDSSN 184 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 ++ R ++R V I ++ F++ + + + ++ ++ +++ + Sbjct: 185 ASTKYLRNKIRHQVIPILEEMNPQFLEGFKNTQEYLRQQLDLVEDYTELIYKKAVKKVDF 244 Query: 254 --------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 L +L+ LL+ + +L +SGK + Sbjct: 245 GYSFDVLFLQRLPHAKAVLYQLLKTFGFTEWNDVYN---------LLEAQSGKMVFSNTH 295 Query: 306 RVVIDRRANFLWITR 320 R+V DR + L++T+ Sbjct: 296 RLVKDR--DELYLTK 308 >gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1] Length = 442 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ASLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|154248857|ref|YP_001409682.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1] gi|154152793|gb|ABS60025.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1] Length = 457 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 119/306 (38%), Gaps = 25/306 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +R +V + +L+AVSGG DS+ +L + + I + +H Sbjct: 21 FKKFVNFIREYV---PNCSSVLLAVSGGVDSIVMLDLFNRAKDELL---INIGVATFNHK 74 Query: 62 LRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 LR A DEV +V C L I V + + + AR RY + AK Sbjct: 75 LRTEADDEVIFVQKFCEGLGIPFFPGEADVKMYCEQNKLSIEEGARILRYEFLKRTAKEN 134 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + I TAH +D LET+ +R + G+ + +N RP + R++I Sbjct: 135 GYSFIATAHNANDLLETIILRQIKGTGPFGLA-------AIKPINGIFIRPLIFFTRKEI 187 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + +R + + D +N D + R VR + + L + ++ K + Sbjct: 188 EEYAKERKLEYVIDRTNFDIEYNRNFVRHKIVPL-LKEINPSVESAYLKLAKNIWELDSY 246 Query: 238 IPKYLTVHMRSIIAISQDIL----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + + + + ++ I + + N + + + R S + G Y +ER Sbjct: 247 VDRAIGIDKSNLEKIGNNFIFKLVNDEYLQIEQIRRYSLLLFGK---PLDYEKLERFKKA 303 Query: 294 LKSGKR 299 SGK Sbjct: 304 RSSGKP 309 >gi|239617939|ref|YP_002941261.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506770|gb|ACR80257.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1] Length = 469 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 128/322 (39%), Gaps = 29/322 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDV 76 ILVAVSGG DSM LL L +S + + ++DH LR+ + ++E ++ Sbjct: 20 QGEKILVAVSGGKDSMALLHFL---VSKKERLGCEICVANMDHGLRDDSGREEAVMIASF 76 Query: 77 CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + V + + L AAR RY + + + A I AH +D Sbjct: 77 CEKHDVPFYHERRDVTQYHKNNRGLSLEEAARIVRYDFLFNAREKLGADKIALAHHLNDL 136 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ MR R KG+ + +N I RP L ++I ++ I + ED Sbjct: 137 VETMLMRIARGTGLKGV-------ISMKPMNNSIIRPLLSVGVQEILDYVTINMIPYKED 189 Query: 192 PSNTDDRFERVRVRRFVRDI--DLHALYLK---------MKKFQDLRVKVNNAVAMLIPK 240 P+N + ++R +R + + +L+A + M+ + + KV + ++ L + Sbjct: 190 PTNVLEVYDRNFIRMRIVPLFKELNASFEDAIYRFYMNIMESYNIIEEKVRSFISSLETE 249 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKR 299 ++ L L+ ++R P +E M L K +R Sbjct: 250 TENGKVQRCFGELDIFLKEQDALVAEVVREIVMRLSEDGYPPSRERIEAFMKLLGKQDRR 309 Query: 300 GCVSIGRVVI-DRRANFLWITR 320 + + R +++ R Sbjct: 310 WTIEFKEDIKSSRLGKYIFFYR 331 >gi|260102340|ref|ZP_05752577.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus DSM 20075] gi|260083849|gb|EEW67969.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus helveticus DSM 20075] Length = 418 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 24/323 (7%) Query: 8 SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F R V +LVA S G DSM LL L ++ + K A +H LR Sbjct: 2 KIADFFRENNINVTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRA 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 +++E + + CS + + W K +P+ G+ AAAR ARYA +++ AK NA ++ Sbjct: 59 DSEEESKLLKKYCSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLL 118 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD LE + ++ R + M M + + + RP L + ++ + + Sbjct: 119 TAHHGDDLLENILLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQE 175 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I + D +N D R R+R V + L + + + + LI Sbjct: 176 YQIDFVIDSTNQADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---- 227 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + + L R+ + +R + + K +R + Sbjct: 228 -----YVDEKNSAMGQLESFLNVAYRIKSEALSQLTEKERIFFWQRTI-WQKYHRRVNEN 281 Query: 304 IGRVVIDRRANFLWITRAVRNLP 326 +G V+ N+ ++ + L Sbjct: 282 LGNFVVMEYQNYFYLYKKQNILE 304 >gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 486 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 70/363 (19%), Positives = 135/363 (37%), Gaps = 36/363 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73 L A ++VAVSGG DS+ LL L ++ + + + +DH LR E + E +V Sbjct: 16 RLASAACLVVAVSGGPDSLALLHRLTALATPYGW---RLHVAHLDHGLRGEQSAAEAAFV 72 Query: 74 SDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +++ + I V + GL AAAR RY ++E A A ++ H D Sbjct: 73 AEIAADWGLTATIELRDVDQVAKQYHVGLPAAARATRYRFLAEVALQQQADAVVLGHQSD 132 Query: 130 DQLETVYMRSQRDYAEKGM----------GLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 DQ ETV + R G+ G + + RP L R++I + Sbjct: 133 DQAETVLLHVLRGTGPSGLSAMRPRTEWVGWRVTAGMPHQAVGPALIRPMLNITRDEIEA 192 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNN 232 + ++ + DP+N + R R+R + + + AL + + + Sbjct: 193 YCDEQQLEPRRDPTNNSLEYTRGRIRHQLLPLLGEYNAKVVSALARTARLAAIETDYMQS 252 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + +I + ++ L + +R + + + ++ + Sbjct: 253 ELDRQWQHLIEFEPGAITFHREQWNHMHPALQRHAIRRAVYLLRPERDELTSSQLDHALS 312 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT-----------LILYPEETTVWDGR 341 + S + C +V+ R+ + +T A PT + T + D R Sbjct: 313 AMNSLQLFCQMPHNLVLHRKPHGWTMTVATTMQPTNDEPQLSIDEWPLNQQGMTPLPDER 372 Query: 342 YQF 344 ++ Sbjct: 373 WRV 375 >gi|307129838|ref|YP_003881854.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937] gi|306527367|gb|ADM97297.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937] Length = 445 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 17/324 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H LVA SGG DS LH + R + A+ V H L A + C R Sbjct: 26 GHYLVAYSGGLDSSV---LLHLMTRLRRRRALSLRAVYVHHGLSAHADTWAEHCRVQCLR 82 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++ V+ + G+ AAAR ARY + +H + ++TA DDQ ET + Sbjct: 83 WQVSFDVLPVQVDAHDGGVEAAARAARYQALQQHL--HDGETLLTAQHQDDQSETFLLAL 140 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R +W+ RP L RE + ++ ++W ED SN D+R+ Sbjct: 141 KRGSGPA---GLASMAAAAQSNGVWLQRPLLGMTREQLDAYARAYQLAWVEDDSNADERY 197 Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R +RR V + + + +L + + L+ + L + A+S Sbjct: 198 DRNFLRRQVLPLLKRRWPHFPSAVARSAELCAEQEQLLDELLAESLATLRNADGALSVAA 257 Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRR 312 L + + F LLR A G +P + R+ + C+ +G + R Sbjct: 258 LTPMSTARRFALLRRWLAEQG--AHMPSRGQLTRLWEDVAASRDDANPCLQLGVWQVRRF 315 Query: 313 ANFLWITRAVRNLPTLILYPEETT 336 ++L++ A+ L +L + Sbjct: 316 RHYLYLLPAMNPLTEYVLPWQPAA 339 >gi|256823094|ref|YP_003147057.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069] gi|256796633|gb|ACV27289.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069] Length = 423 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 117/310 (37%), Gaps = 18/310 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI+VA+SGG D L + L+ S SA+ +DH L+ + D + C L Sbjct: 25 HIVVALSGGVD--SLSLLHALHLARTSDSSYSLSAVYIDHQLQAPSSDWAKQNQRFCESL 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V + K L + AR+ARY +SE T ++T +DQ ET ++ Sbjct: 83 DIPFQSVQVEVDKDLASLESTARKARYQALSEFV-PNPQTCLVTGQHLNDQAETFLLQLF 141 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R KG+ + +++RP L R+ + S+ + EDP+N D Sbjct: 142 RGAGSKGLASM---PKLTDFAQGYLARPLLTVSRKALESYCNSNGLQAIEDPTNQDTDIR 198 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL--- 257 R VR V + K ++ L+ + + + + Q+ L Sbjct: 199 RNFVRHQVMPLVEQKWPQASKVIASAS-EIQADNQQLLDELAAIDFENCYEVKQNSLVLA 257 Query: 258 ---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311 + + LLR CG +P ++++ ML K + + I R Sbjct: 258 EVRQLSPQRVRNLLRYWLEGCG--ADMPSQAVLQQIQTQMLDAKEDANPAIEMSSGSIRR 315 Query: 312 RANFLWITRA 321 + L+ Sbjct: 316 YRDGLYWVTE 325 >gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14] gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 442 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRHLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|314932731|ref|ZP_07840101.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87] gi|313654561|gb|EFS18313.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87] Length = 428 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 AHI+VAVS G DSM LL HS+L+ + + V+H LR + +E ++++ C Sbjct: 11 DAHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQ 67 Query: 79 RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +I V SK + AR RY E + +NA +++TAH DDQLET+ Sbjct: 68 KNQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + + GM D Y+ + + RP L ++DI ++ + + + ED SN Sbjct: 128 LYRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQ 184 Query: 196 DDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D ++ R +R+ + +D H L LK+K++ D +++ A + Sbjct: 185 DTKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQLLKEHARYFVAHF 237 >gi|223044415|ref|ZP_03614448.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus capitis SK14] gi|222442204|gb|EEE48316.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus capitis SK14] Length = 428 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 17/234 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 AHI+VAVS G DSM LL HS+L+ + + V+H LR + +E ++++ C Sbjct: 11 DAHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQ 67 Query: 79 RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +I V SK + AR RY E + +NA +++TAH DDQLET+ Sbjct: 68 KNQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + + GM D Y+ + + RP L ++DI ++ + + + ED SN Sbjct: 128 LYRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQ 184 Query: 196 DDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D ++ R +R+ + +D H L LK+K++ D +++ A + Sbjct: 185 DTKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQLLKEHARYFVAHF 237 >gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 400 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 15/324 (4%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +SP V F R L + +L+AVSGG DS+ L+ L + ++ + S SVDH Sbjct: 66 LISPATLVDLF-RPLEHARKVLLAVSGGPDSVALM-LLAAQWAEAVWKAPPLSVASVDHG 123 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E V++ +RL + H ++ W+ KP+T L AR+ARY L+ HA+TI A Sbjct: 124 LRPDSLAEAEQVAEWAARLGLPHHILRWEGEKPKTRLQERARDARYGLLIAHAETIGADY 183 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ET+ R R +G L GM +++ L +RP L + ++ + Sbjct: 184 LVTAHHADDQAETILFRLLRGSGPRG--LKGM-ESLFQRGELLHARPLLGMTKAELLAIC 240 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + DPSN D RF R R+RR +D AL ++ + A Sbjct: 241 DTCRHPFFTDPSNLDVRFARARLRRMERRFASAGLDRAALLRLGQRAARAEAVIAERAAA 300 Query: 237 LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L + + ++ +L L+ + P +E + L+ Sbjct: 301 LRASLPAERAPGFVQLDLALVSREPEEILLRLIEAEILDLTARERPPRLERLEALCTLLR 360 Query: 296 S----GKRGCVSIGRVVIDRRANF 315 + GK ++G V + A Sbjct: 361 AALLQGKVFKSTLGGVRLHLDAGG 384 >gi|312888854|ref|ZP_07748417.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603] gi|311298729|gb|EFQ75835.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603] Length = 445 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 141/359 (39%), Gaps = 25/359 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ I + F ++ +LVAVSGG DS+ L L F + Sbjct: 7 FLNFIAQNQLFTQN----DRLLVAVSGGRDSVVLAHLLKQ-------AGFNFGIAHCNFQ 55 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR + A+ E + S + L + +S+ + AAR+ RY + Sbjct: 56 LRIDEAQAEQAFTSQLADALTVPFHTISFDTQTYARQNGISTQMAARDLRYTWFEQIRNE 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I AH +D +ET+ + R G G++GM + N ++ RP L R++ Sbjct: 116 HGYSYIAVAHHQNDSVETILLNLTR-----GTGIAGMHG--ILPQNGYLVRPLLFLNRDE 168 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I + + Q + + ED SN ++ R ++R V L L K+++ D ++ + + Sbjct: 169 IDTIVDQNGLHFMEDSSNASSKYARNKIRHQVIP-PLKELNPKLEETFDRNMERFRELEL 227 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 L+ L + ++ D +++ + + L + G +E VM L Sbjct: 228 LLNHQLEQLKQQMMVQVGDEIHLHISAVKSLYPQRLLLYGLLHPYGFSEPVIEDVMASLD 287 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 V+ + L +++ ++++ + V+ +++ L D I Sbjct: 288 KHAGRVFESQGFVLLLDRDKLILSKRRERPGPVLIHQNDHEVYYSQFKITLLHDDSPLI 346 >gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 329 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGGSDS+ LL+ + A++VDH +R A +E R+V+ +C + Sbjct: 30 GKLGIAVSGGSDSLALLLL-------GAVSDFPVEAVTVDHGMRPEAAEEARFVAQICQQ 82 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + H +++ K G+ AAAR RYAL++E AK N +MTAH DDQ ET MR+ Sbjct: 83 IGVPHQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRA 142 Query: 140 QRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ I + L + RP L R + + + ++ DPSN + Sbjct: 143 ARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVKKAGFTFVSDPSNDNPH 202 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 ++R RR ++ A ++ + I + I ++L Sbjct: 203 YDRTHFRRLLK-----ASPWINRQHIAEAARYCQQSEEAIEWITAKEAAARIRKKGEVLY 257 Query: 259 IDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 +D +L L+ + G +L ++ R + L+ GK+ ++ VI + Sbjct: 258 LDPTELPIEILRRLVLRAMETITGNTAL-RGSALSRFIRSLQQGKKVMLA---DVIGQGG 313 Query: 314 NFLWITRA 321 + RA Sbjct: 314 EYWRFYRA 321 >gi|261364547|ref|ZP_05977430.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996] gi|288567113|gb|EFC88673.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996] Length = 416 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 113/306 (36%), Gaps = 16/306 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG DS+ LL L + R + A+ V H L A D + + + +C Sbjct: 2 VTVGLSGGLDSVVLLHTLACL---REELGLDVHALHVHHGLSRNADDWLVFCTRLCQEWN 58 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + K G+ AAAR+ARY + S +++I AH DDQ+ET + + R Sbjct: 59 VPFRSAKVEVKKDGLGIEAAARKARYQVFS----DDPSSVIALAHHQDDQIETFMLAAVR 114 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 K + + + +W RP L R+++ ++ N+ ED SN D F R Sbjct: 115 GGGIKALAAMPQWRKLNEEKQIW--RPLLTFSRKELENYAAACNLPNIEDESNADTAFLR 172 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDIL 257 +R + + + + +A+L Y TV +S+ Sbjct: 173 NWMRYEALPVWRERIPNFDRHVCANIRSLQTDLAILDEVVDADYQTVCESGRFQVSRW-Q 231 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 +L I R + L + G + +FL+ Sbjct: 232 TFSEARRSRIL--WRFFKENGIVESSPRKLADFARILLEAETAQWQFGETSVCLYRDFLF 289 Query: 318 ITRAVR 323 I + + Sbjct: 290 ILKQSQ 295 >gi|58582920|ref|YP_201936.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427514|gb|AAW76551.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 434 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 19/355 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L++ +V + + GL AAAR AR+ + + AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R +G+ + + RP L R D+ ++ L + + W EDPSN Sbjct: 127 LLRALRASGPEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252 D R +R +R V + +A A+L+ + + + + A+ Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGAL 243 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310 L L + LP ++ER + + ++ C + +V + Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 R L++ R PT + WDG Q + +++ + + P Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353 >gi|118594638|ref|ZP_01551985.1| hypothetical protein MB2181_03180 [Methylophilales bacterium HTCC2181] gi|118440416|gb|EAV47043.1| hypothetical protein MB2181_03180 [Methylophilales bacterium HTCC2181] Length = 446 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 164/428 (38%), Gaps = 63/428 (14%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A+SGG DSM L+ AL+ + + K+ A + H L A + + + C +L I Sbjct: 31 IALSGGCDSMVLMYALNQLKDEL---KLSIKAHYIHHGLSAYADEWLAFCEAACRKLNIP 87 Query: 84 HSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + P G+ AAR+ RY ++ ++ +I TAH +DQ ET+ ++ R Sbjct: 88 FDSMRVDTNTLPSLGIEGAARKLRYEALA----QLSVGVIATAHHENDQAETLLLQLIR- 142 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G GL G+ YD + RP LR +R+ I F I + ED SN D RF+R Sbjct: 143 ----GAGLKGLAAMPEYDKEKNLWRPLLRVQRQVIEDFADIYEIVFIEDDSNEDTRFDRN 198 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR-SIIAISQDILNIDS 261 +R+ + L LY + + + +A + + ++ S S+D+ ++ Sbjct: 199 FLRKNI----LPQLYERFPHAANTIARSAKLIASGLDLHQSIAESDSESYFSKDLARLNL 254 Query: 262 TLLF-----YLLRVSAAICGGQIS-LPGYRSMERVMLFLKS---GKRGCVSIG-RVVIDR 311 ++ ++ + +P + M+ +K + + I V I Sbjct: 255 MMMRDLNQERVINLIRWWLEKHRYKMPTLKVMQEAYKQIKDRRKDAQINIQIAPNVSIRA 314 Query: 312 RANFLWITRAVRN---------------LPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356 N LW+ V N LP T+ DG L I+I Sbjct: 315 YKNELWLVENVTNAADFEIYWRGEDTITLPDASKLSFTKTIGDGI-SVDKLGTQTIRIQN 373 Query: 357 QSYRKADVPSG-IPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKV 415 + + P+ P + L P LAP+ R M + F + Sbjct: 374 RRGGERFKPAANQPTRTLKHLLQQSP--------LAPWEREM----------LPMLFLED 415 Query: 416 FIPRLPFF 423 + +P F Sbjct: 416 QLIAVPHF 423 >gi|84624777|ref|YP_452149.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368717|dbj|BAE69875.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 434 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 134/355 (37%), Gaps = 19/355 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P +L+A SGG DS LL L + R G A+ V H L A + Sbjct: 12 IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L++ +V + + GL AAAR AR+ + + AH DDQ ET Sbjct: 69 CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R ++G+ + + RP L R D+ ++ L + + W EDPSN Sbjct: 127 LLRALRASGQEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252 D R +R +R V + +A A+L+ + + + + A+ Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVCTASGAL 243 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310 L L + LP ++ER + + ++ C + +V + Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 R L++ R PT + WDG Q + +++ + + P Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353 >gi|262044741|ref|ZP_06017788.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037891|gb|EEW39115.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 259 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 14/247 (5%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L +LVA SGG DS LL L + + A+ V H L A D V + Sbjct: 10 AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSVHADDWVVH 67 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C + ++ V ++ G+ A AR ARY + +++TA DDQ Sbjct: 68 CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEMLVTAQHQDDQC 125 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +R GLS M + + + + RP L RE +R + L +SW ED Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249 SN DD ++R +R V + L + F + + + A L+ + L + S+ Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238 Query: 250 IAISQDI 256 +A + Sbjct: 239 VAEDGSL 245 >gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083] gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083] Length = 389 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 152/395 (38%), Gaps = 34/395 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + +A+SGGSDS LL+ FG AI++DH LR A+ E R + Sbjct: 7 LHSDAPLGIALSGGSDSTALLVLAVDA-----FGAENLQAITIDHGLRAAAQAEARQAAK 61 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLE 133 +C+ L + H++ + K L A AR ARY + + A+ + I HT DD E Sbjct: 62 LCASLGVPHTIRTL-ALKDGPDLQARARNARYMALGDWARAQLNSIPAIALGHTKDDVSE 120 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T MR R G+ + RP L R ++ + L +R I+W EDPS Sbjct: 121 TFLMRLARGSGVDGLATM---PEYFERAGMVFKRPLLAASRAELHAMLTKRGITWSEDPS 177 Query: 194 NTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 N D RF RV++R+ +D L + + NA I + Sbjct: 178 NQDPRFTRVKMRQAQATLDTLDLTSDRLSQTADWMRAASEVLENAADNWITTHAYTEYGD 237 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 ++ Q + F +L + + G P + ++ ++ ++ + Sbjct: 238 VVLDLQALRTAPKETAFRVLTRALSTLSGNPYRPRFSALSELLH-----SEVARTLQGCL 292 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368 I R L +TR V + + Y +Q +I P G Sbjct: 293 IYRYKGTLRLTREVNAIENIEHY----------WQIDGPLAPSHRITPLGENGLKQCDGW 342 Query: 369 P--PIIAQRALSSMPSKE-GGKPLLAPFSRFMTKF 400 ++ +R+L S P+ G + AP +R + Sbjct: 343 RNTALLPRRSLLSTPAIWLDGVLMAAPIARPDPNW 377 >gi|300909077|ref|ZP_07126540.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri SD2112] gi|300894484|gb|EFK87842.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri SD2112] Length = 464 Score = 208 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 133/308 (43%), Gaps = 23/308 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 8 FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHE 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C + + +V W ++ PQTG+ AAR+ARY E K A+ Sbjct: 61 LRKQSELEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQAS 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 121 ILLTAHHQNDLAETMLMKMARGGQL--SQLVGIRDWRPFASG-TLIRPLLPFSKQQLKKY 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233 LQ ++ W ED +N D +R R R + + + + ++ + Sbjct: 178 ALQHHLKWYEDKTNKDLSIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLAWRDQE 237 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 VA + + R I+A +L + +LR G I + ++ ++ Sbjct: 238 VADQLAACVDQQGRMILA---RLLQNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLQI 292 Query: 294 LKSGKRGC 301 L++ ++ Sbjct: 293 LENEQKPQ 300 >gi|307609584|emb|CBW99086.1| hypothetical protein LPW_08711 [Legionella pneumophila 130b] Length = 400 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 17/304 (5%) Query: 38 ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG 97 LH + S + A+ ++H + + + R+ +C L IA + Sbjct: 2 LLHVLASTPPLSN-QLLAVHINHGISGNSLNWQRHCEQLCLDLGIAF-IAKAIEFDRSAN 59 Query: 98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 + AAR ARY S + + ++ H DDQ ETV ++ R G+ C + Sbjct: 60 VEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQAETVLLQLFRGAGVDGLAAMQECSNL 117 Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 ++RPFL C R ++ + + W ED SN D ++ R +R V + L Sbjct: 118 ---GAGQLARPFLTCPRVELEHYARIHELKWIEDESNQDTKYSRNYLRHRVMPLLLEKWP 174 Query: 218 LKMKKFQDLRVKVNNAVAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 A A L I + + + + I ++ + +L+ Sbjct: 175 GVAGNISRAATHCQQAKANLEVLAIKDCPDLLNATDHLLIEPIKGLEFERITNVLKFW-- 232 Query: 274 ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLI 329 + +I LP ++ R+ ++F K VS ++ + R L++ +A + NLP I Sbjct: 233 LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWDQIQVRRFQQHLYLLKADQINLPKAI 292 Query: 330 LYPE 333 + + Sbjct: 293 KWQQ 296 >gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|241762204|ref|ZP_04760286.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|61217187|sp|Q5NLX8|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|241373251|gb|EER62870.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 329 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGGSDS+ LL+ + A++VDH +R A +E R+V+ +C + Sbjct: 30 GKLGIAVSGGSDSLALLLL-------GAVSDFPVEAVTVDHGMRPEAAEEARFVAQICQQ 82 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + H +++ K G+ AAAR RYAL++E AK N +MTAH DDQ ET MR+ Sbjct: 83 IGVPHQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRA 142 Query: 140 QRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ I + L + RP L R + + + ++ DPSN + Sbjct: 143 ARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVEKAGFTFVSDPSNDNPH 202 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 ++R RR ++ A ++ + I + I ++L Sbjct: 203 YDRTHFRRLLK-----ASPWINRQHIAEAARYCQQSEEAIEWITAKEAAARIRKKGEVLY 257 Query: 259 IDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 +D +L L+ + G +L ++ R + L+ GK+ ++ VI + Sbjct: 258 LDPTELPIEILRRLVLRAMETITGNTAL-RGSALSRFIRSLQQGKKVMLA---DVIGQGG 313 Query: 314 NFLWITRA 321 + RA Sbjct: 314 EYWRFYRA 321 >gi|90416187|ref|ZP_01224119.1| mesJ protein [marine gamma proteobacterium HTCC2207] gi|90331912|gb|EAS47126.1| mesJ protein [marine gamma proteobacterium HTCC2207] Length = 458 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 119/321 (37%), Gaps = 27/321 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L ILV SGG DS L + +A+ + H L A D ++ Sbjct: 27 FDQLEAAPQILVGFSGGLDSTV-----LLHLLCELLPPERITAVHIHHGLSANADDWQQH 81 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +C L + S +K GL +AAR+ARY + EH L++ H DDQ+ Sbjct: 82 AKTLCHSLGVRLISESVVVNKTGAGLESAARDARYKVFEEHLIEDG--LLLLGHHADDQV 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV R R +G LSG+ T + RP L + ++++ + + W ED Sbjct: 140 ETVLFRLLRGSGARG--LSGIPQTRAVGAG-HLIRPLLNQPKSRLQAYAEAQQLVWIEDE 196 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSII 250 SN ++F+R +R V + L + + +R + A + + ++ Sbjct: 197 SNQQEQFDRNYLRNSV----IPTLAERWPDYVQGVMRSAEQSGQADQLADSVARADLGLL 252 Query: 251 AISQD----------ILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKR 299 + + ++ LLR + G + + +L + Sbjct: 253 DPRPERGGWSLDLNQFIALEPLRQKNLLRYWPEVQGMPPLGQTFIDEVMYSLLTAREDSE 312 Query: 300 GCVSIGRVVIDRRANFLWITR 320 V + + R L++ R Sbjct: 313 PKVVRADLQLCRYRQRLYLLR 333 >gi|325681847|ref|ZP_08161366.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri MM4-1A] gi|324978938|gb|EGC15886.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus reuteri MM4-1A] Length = 470 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 14 FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 66 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C + + +V W ++ PQTG+ AAR+ARY + K A+ Sbjct: 67 LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 126 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 127 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233 LQ ++ W ED +N D +R R R + + + + ++ + Sbjct: 184 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 243 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292 VA + R I+A L + ++ +LR G I + ++ ++ Sbjct: 244 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 297 Query: 293 FLKSGKRGC 301 L++ ++ Sbjct: 298 ALENEQKPQ 306 >gi|269469148|gb|EEZ80693.1| tRNA(Ile)-lysidine synthetase [uncultured SUP05 cluster bacterium] Length = 391 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 130/310 (41%), Gaps = 22/310 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +I++A+SGG DS+ LL L++ S + A+ +H L + + + ++ Sbjct: 11 LKDKNIVLALSGGIDSVVLLHYLNTHFSGK------LRAVHCNHHLSKHCSEWDEFCKNL 64 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L I + + K + L AR+ RY +S + + ++ TAH +DQ ET+ Sbjct: 65 CQSLSIDYLNIDIFI-KNDSNLEENARKKRYHSLSCNLEEN--EVLCTAHHQNDQAETLL 121 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R G+ T+ ++ RP L + I + + + W ED SN + Sbjct: 122 LQLFRGSGVAGLASMPKEKTLGKGIHY---RPMLSLNKTQIIDYAKKYKLRWIEDDSNKN 178 Query: 197 DRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 F R +R + +L + K Q +K+ +A + K + S Sbjct: 179 TDFRRNFLRLDILPKLESVYQNLTKTLFRSAKHQSEALKLTRELADIDIKENNIVSDSGR 238 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVV 308 + +++ + + ++R ++ G P + M++++ L++ + V G+ Sbjct: 239 INTLELIKLGPHRVKNIIRHHLSLIG--FLAPSDKIMDQIIDLLRAKIDAKPLVGWGQYE 296 Query: 309 IDRRANFLWI 318 I R L+ Sbjct: 297 IRRYQGELYF 306 >gi|127513547|ref|YP_001094744.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4] gi|126638842|gb|ABO24485.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4] Length = 474 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 23/330 (6%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + P + R PA +++A SGG DS L L L + + + + V H Sbjct: 19 VKPAAGINSGSRPATKPAMKLVLAYSGGVDSEVLAHGLS--LFAKQHPEFNYLLVHVHHG 76 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINAT 120 L A + + SV + + L AAAREARY + + Sbjct: 77 LSANADSWQSHCERRAREYGLPISVKRVTVASGARISLEAAAREARYDALRS--ELAPGD 134 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQLET+ + +R KG+ G D + RP L R I +F Sbjct: 135 ILLTAHHQDDQLETLLLALKRGLGPKGLAAMGEVQAFTPDN--PLLRPLLTSSRAQIEAF 192 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + +S ED SN D RF+R +R V I L A + ++ LI + Sbjct: 193 AMAEGLSHIEDESNKDSRFDRNFLRNEVLPI-LTARWPAFAATASRSAQLCAEQQALIDE 251 Query: 241 YLTV----------HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 +++ H ++ + + + +LLR G LP + + Sbjct: 252 EVSLCLPAMLLSVPHSQAAVLDLKALAEQPGRWRPHLLRGFIEHRG--FPLPSAAQLGDI 309 Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWI 318 + L K + + I +V+ R L++ Sbjct: 310 LAQLEAKDDAQVAIRIRSMVLRRFQYALYL 339 >gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208] Length = 271 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 13/236 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFC 76 Query: 78 SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + + Q G+ AR RY + N + AH DDQ+E Sbjct: 77 ERHGIPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I ++ + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N + R R R + + A+Y ++F + + + L L ++ Sbjct: 194 NASQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFRFLEALASDLLNKNL 249 >gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6] gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6] Length = 439 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 106/305 (34%), Gaps = 18/305 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L S+ + SA+ + H L+ A + VC L + Sbjct: 24 VAFSGGLDSTVLLHLLASLAKTETLPP--LSAVHIHHGLQAAADAWPGHCQSVCDGLGVP 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + +P AAR+ARY +E T +++T DDQ ET+ R R Sbjct: 82 LRVMRVQV-QPGASPERAARDARYQAFTEV--TGAGEVLLTGQHRDDQAETLLFRLLRGA 138 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R + ++ + W EDPSN D RF R Sbjct: 139 GVRGLAAMPAHRRLA---GGHLVRPLLDVSRVALENYADAHQLQWIEDPSNADPRFSRNY 195 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + ++ A +L + L + S Sbjct: 196 LRHRVFPTLTERWPQAVSNLARAVEHLDEAQGLLDELACMDLKTADQPSPFPWLPLPSLA 255 Query: 264 LFYLLRVSAAICGGQI--------SLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L L +S A + LP R + K + + + R Sbjct: 256 LTPLRELSDARQRNALRHWLTPLTRLPDSDHWASWRSLRDAKGDAQPVWCLADGELHRCG 315 Query: 314 NFLWI 318 LW Sbjct: 316 GRLWW 320 >gi|225849409|ref|YP_002729573.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1] gi|225643627|gb|ACN98677.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1] Length = 454 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 126/324 (38%), Gaps = 23/324 (7%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ F SL+ P IL+A SGG DS+ L L + KI ++H L Sbjct: 5 KFLKAVKDF--SLIQPKDKILIAFSGGPDSVVLSFLLKKFQAYFKIEKISL--AHLNHSL 60 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 RE + + + D + I V K + + A RE RY E + N Sbjct: 61 REESDKDEEFCKDFGQKYDIPVFVKKVDVKSVAKKEKKSIEEAGREERYKFFKEIMEKEN 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + TAH D +ET+++ + + G + I RP ++E++ Sbjct: 121 FNKLATAHHLSDLIETMFLWFVQGNKKGLKGFKPNEEN--------IIRPLYYIKKEELL 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVA 235 + + ++S+ D SN D R+ R +VR + I H+L + + + + + Sbjct: 173 EYCHKNDLSYVIDKSNFDKRYLRNKVRLDLIPIAKEINHSLEESLLRLSFFQSVDEDFLE 232 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + L + + + + ++ + I P Y+ M ++ LK Sbjct: 233 IYSKDILKSLQEKDYIDLNYLNTLHEAVKYRVI--TNWIYEKTRIYPSYQKMLNILKLLK 290 Query: 296 SGKRGCVSIG-RVVIDRRANFLWI 318 G + + + + + + L++ Sbjct: 291 MGGTKALHLQENLQLIKEYDKLYL 314 >gi|184152910|ref|YP_001841251.1| cell cycle protein [Lactobacillus reuteri JCM 1112] gi|183224254|dbj|BAG24771.1| cell cycle protein [Lactobacillus reuteri JCM 1112] Length = 477 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 21 FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 73 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C + + +V W ++ PQTG+ AAR+ARY + K A+ Sbjct: 74 LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 133 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 134 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 190 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233 LQ ++ W ED +N D +R R R + + + + ++ + Sbjct: 191 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 250 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292 VA + R I+A L + ++ +LR G I + ++ ++ Sbjct: 251 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 304 Query: 293 FLKSGKRGC 301 L++ ++ Sbjct: 305 ALENEQKPQ 313 >gi|319901663|ref|YP_004161391.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108] gi|319416694|gb|ADV43805.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108] Length = 423 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 133/395 (33%), Gaps = 61/395 (15%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + I + ILVA+SGG+DS+ ++L A + Sbjct: 1 MNMQKITQFINRNKLFSQKDKILVALSGGADSV-------ALLRLLLALGYTCEAAHCNF 53 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115 LR + + +V ++C L+I ++ + + K + AAR RY + K Sbjct: 54 HLRGTESDRDETFVRNLCKTLQIPLYIIHFSTEKEAKKRHVSIEMAARTLRYEWFEKMRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +A +I AH DD +ET+ + R G+ + +N I RP L R+ Sbjct: 114 ECDAGVIAIAHHQDDSVETLLLNLIRGTGINGL-------QGIRPINGKIVRPLLCLGRK 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 +I +L + D +N D + R ++R + + ++ D+ + Sbjct: 167 EIIEYLESIGQEYVTDSTNFQDEYTRNKIRLNLLPMMQEINPSIKESILRTAGYLNDVSI 226 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RS 286 N + LT I + Q+ TLLF +L G+ Sbjct: 227 IYNKGIEEAKRHILTEKGIDINLLLQEP--APETLLFEIL-----------YPLGFNTSQ 273 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWI------------TRAVRNLPTLILYPEE 334 ++ + L S + I + L I R P I+ ++ Sbjct: 274 IKDIYQALDSQSGKIFTSAEWRIAKDRKLLLIQSKQEPHKPILEMREYNYTPEFIIPQDK 333 Query: 335 TTVWDGRYQFQNL--------SDSLIQIGPQSYRK 361 T + N DS I G +K Sbjct: 334 KTACFDADKISNPLSLRLWKQGDSFIPFGMTGRKK 368 >gi|229824541|ref|ZP_04450610.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271] gi|229785912|gb|EEP22026.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271] Length = 487 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 7/235 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +++AVSGG DSM +L ++ + R + ++ +H LR + +E + ++ + Sbjct: 24 VVLAVSGGVDSMVMLRLMNELNQLRQYNHLQLVVAHFNHKLRPESDNEAVAIKEIVAEYG 83 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W T + A AR+ARY +E +T A ++MTAH +D ET MR R Sbjct: 84 CIYFATEW-GEPAATNVEAQARDARYQFFAEVIRTTEADVLMTAHHLNDVAETFLMRMTR 142 Query: 142 DYAEKGM-GLSGMCDTILYDLNLW-----ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G+ G+ G ++ D + I RPF+ + ++ ++ + N+++ ED SN Sbjct: 143 GTSIRGLQGIRGCYQRLMSDPSGHTVMPTIIRPFIGVTKAELEAYAEKFNVTYFEDASNY 202 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D F R R R + ++ ++ ++ ++ + YL + + ++ Sbjct: 203 MDHFVRNRFRHTYIPQLMQENPQLLQNLLTIQQQIQDSYTVQYADYLDLEPQLLM 257 >gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16] gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16] Length = 464 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 17/249 (6%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ R L A ++V VSGG D L LH + S R K++ A VDH Sbjct: 2 VDKVRAFIDRHRLLTEGATVIVGVSGGPD---SLALLHLLSSLRDEWKLQLVAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C+ RI V + G AAR RY +E K Sbjct: 59 RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + + ++ RPFL R +I Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFHGS-YLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 + + ++ DPSN D + R R R + + + L+ + +++ ++ + + Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFL 235 Query: 235 AMLIPKYLT 243 L L Sbjct: 236 EELATDALN 244 >gi|312173368|emb|CBX81622.1| cell cycle protein [Erwinia amylovora ATCC BAA-2158] Length = 433 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 24/357 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PQLQLRAVHIHHGLSPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A V + C R R+ VV + + G+ AAAR+ARY + + ++TA Sbjct: 59 ADGWVAHCQQQCDRWRVPLVVVRVQVDALEGGIEAAARQARYQALRQQLAA--GETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ + + RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLL---GDHRHLRPLLAQSRQQLESWAQRYQ 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I W ED SN D R++R +R V + L+ + ++ L+ + L Sbjct: 174 IGWIEDDSNQDPRYDRNFLRLQVMPL-LNQRWPHFASAVARSAQLCGEQERLLDELLAES 232 Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSG 297 + +++ S +L + LLR I S+P +++R+ L ++ Sbjct: 233 LDALVDESGALCFTPLLTMSDARRSALLRRW--IARQHGSMPSRAALQRIWLEVACSRAD 290 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 C+ +G + R + L+ LP + W +Q L D L Q+ Sbjct: 291 AEPCLRMGSREVRRFRDRLYW------LPQRLPLGASQLAWPAPWQPLTLPDGLGQL 341 >gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1] gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1] Length = 463 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 89/402 (22%), Positives = 150/402 (37%), Gaps = 45/402 (11%) Query: 10 RFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 R L+ P +L+AVSGG DS+ LL+ H +K S +H LR A D Sbjct: 8 RLHRHRLIEPQQRVLIAVSGGIDSVSLLLLFHQAAPQM---DLKLSVAHYNHGLRGEAAD 64 Query: 69 E-VRYVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 E +V+ + RL + W +P T + AAR RY + AK A I Sbjct: 65 EDEAFVAALAGRLGLPCYRERAPQGWWTREPGTKME-AARRLRYDFLERVAKAAGADRIA 123 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DDQ+ETV R +G+ + RP L RR ++ +FL Sbjct: 124 LGHHADDQVETVLFHFLRGSGLRGLAGMPI-------RRGPYIRPLLAFRRAELAAFLQA 176 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 W D SN + R R+R + + L+ +F + +++ Sbjct: 177 ERQEWRHDASNDSTLYTRNRIRHELIPL----LHDYNPRFAEAIGRMSRLCLDDADYLDE 232 Query: 244 VHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-- 294 V R + ++ + + + + +LR ++PG+ E ++ L Sbjct: 233 VADRELARLTNEEGLDAKGLEALPRAIGRRVLRRFIEAAA---AMPGFEKTEAMLQRLTE 289 Query: 295 ---KSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLS 348 KSG VS +V + L+ + + P E GR+Q + Sbjct: 290 RGGKSGPVDQVSGHTLVSEAGRLRLYKDLPWKGDGGFYRPLPEPGEP----GRWQSVAVP 345 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390 ++ ++ + + D + P +R + PS PL+ Sbjct: 346 EAGGRMRIARWDRIDDRDPLEPG--EREICLKPSVAALGPLV 385 >gi|182420057|ref|ZP_02951291.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521] gi|237669480|ref|ZP_04529460.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376094|gb|EDT73681.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521] gi|237654924|gb|EEP52484.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 464 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 123/304 (40%), Gaps = 24/304 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 +LVA+SGG DS+ LL L+++ ++ + I+ A ++H LR+ A ++ YV + Sbjct: 17 SGDKVLVALSGGPDSVCLLNILYNLKAELN---IEIGAAHLNHLLRDKDAFEDEEYVKIL 73 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C L I V +K + A R+ARY + K T I TAH +DQ Sbjct: 74 CKSLDIPCFVKRVDINKCSKDKKMSSEMAGRDARYNFFDDIVKDKGYTKIATAHNANDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R +G L G+ I RP L R+++ ++ N+ D Sbjct: 134 ETILFRLMRGSGIEG--LCGIKVRR-----DKIIRPILCLSRKEVEEYIEINNLKPRIDK 186 Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244 +N + + R ++R ++++ + + + L K + N+ K+ Sbjct: 187 TNFEKIYNRNKIRLDMIPYIKENFNEDIIQTLNRMSVLLQKDNEFIENSARSFYEKHCIE 246 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I I +++ + ++ ++R + + + + K+ + + Sbjct: 247 QSDYFI-IKKEMFDNKEAVVTRVIRYALTNFSKTHYDFEMKHIYEICNLAKNNSGKAIDL 305 Query: 305 GRVV 308 + Sbjct: 306 PNKI 309 >gi|224023875|ref|ZP_03642241.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM 18228] gi|224017097|gb|EEF75109.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM 18228] Length = 437 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 73/377 (19%), Positives = 134/377 (35%), Gaps = 49/377 (12%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L+ +LVA+SGG+DS+ LL L + + A + LR E + + R+V Sbjct: 16 LLSGERVLVALSGGADSVALLCVLQEL-------GYRLEAAHCNFHLRGEESDRDERFVR 68 Query: 75 DVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C R +I V+ + + + + AARE RY E ++ AH DD Sbjct: 69 QLCERRQIPLHVIHFSTGAYAASRKISIEMAARELRYRWFEELRDQGGFRVVAVAHHRDD 128 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + R G+ + +N + RP L RE I ++L + + Sbjct: 129 SVETLLLNLTRGTGINGL-------RGIRPVNGTVVRPLLGVSREAILTYLDRLGQPYVT 181 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D +N +D + R ++R V L AL + + + + + Y + Sbjct: 182 DSTNLEDAYARNKIRLNV----LPALREINPSVAESIAETASRLDDVAEIYRHAMQEACC 237 Query: 251 AISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + D I L + A + G+ + ++ L Sbjct: 238 RVCPDGKRISIPALLKEVAPQAVLFELLHGKGFNAS--QIRDILRSLSGESGRLFQGAGW 295 Query: 308 VIDRRANFLWITR---------------AVRNLP------TLILYPEETTVWDGRYQFQN 346 + R +L++ V +LP + + W + + Sbjct: 296 TLLRDRKYLFLRSDAEKSILSVLQERIVPVEDLPVLPREKEVACLDADRITWPLELRVWS 355 Query: 347 LSDSLIQIGPQSYRKAD 363 D I +G Q+Y+K Sbjct: 356 SGDRFIPLGMQNYKKVR 372 >gi|119897207|ref|YP_932420.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72] gi|226695534|sp|A1K3X8|TILS_AZOSB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|119669620|emb|CAL93533.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72] Length = 448 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 73/384 (19%), Positives = 134/384 (34%), Gaps = 21/384 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + + A+SGG DS+ L L + F +A+ V H L A ++ + +C+ Sbjct: 22 SRLCCALSGGVDSVVTLDLLTRLQPRFGF---TLTAVHVHHGLSPHADAWAQFCARLCAA 78 Query: 80 LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + ++ + GL +AAR R+A + ++ H DDQ ETV R Sbjct: 79 RGLTLAIRRVEVPTDTGQGLESAARARRHAELVAL----PCDWLVFGHHQDDQAETVLFR 134 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G+G + + + + RP L R I ++ + W ED SN D R Sbjct: 135 LFRGSGLRGLGAMAAVEPGQHAMPGKL-RPLLDIGRAGIVAYARAAGLEWIEDESNADCR 193 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SIIAISQDI 256 F R +R V + + +L + + Sbjct: 194 FTRNALRHKVLPVVQAQFPAVAPTLARTAALLREGADLLDDLARLDENACGGPVLAADVF 253 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVIDRRANF 315 ++ + LLR A G + P + + L+ + +G + Sbjct: 254 ASLPAARAANLLRWQTARMGARA--PSRARLGETLRQLREAPGPLRLPLGDLWCCAYQGR 311 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQSYRKADVPSGIP--- 369 +W+ R L+ E+++ G Q Q + +++ A G+ Sbjct: 312 VWLERDDEAPLRAHLWCGESSLGWGAGQVRLSQGGGGAALRVAAGEAMLAPPAPGLRMRL 371 Query: 370 -PIIAQRALSSMPSKEGGKPLLAP 392 P R+ ++ + G P L P Sbjct: 372 GPGRPTRSFKNLCQEAGIPPWLRP 395 >gi|148543503|ref|YP_001270873.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016] gi|227363652|ref|ZP_03847766.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3] gi|148530537|gb|ABQ82536.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016] gi|227071321|gb|EEI09630.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3] Length = 464 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + RFF ++VAVS G DSM LL L + S + + ++H Sbjct: 8 FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+ ++ E R++ C + + +V W ++ PQTG+ AAR+ARY + K A+ Sbjct: 61 LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH +D ET+ M+ R L G+ D + + RP L ++ ++ + Sbjct: 121 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 177 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233 LQ ++ W ED +N D +R R R + + + + ++ + Sbjct: 178 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 237 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292 VA + R I+A L + ++ +LR G I + ++ ++ Sbjct: 238 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 291 Query: 293 FLKSGKRGC 301 L++ ++ Sbjct: 292 ALENEQKPQ 300 >gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group] Length = 693 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 40/327 (12%) Query: 10 RFFVRSLV-----YPAHILVAVSGGSDSMGLLIALHSV--------LSDRSFGKIK---- 52 R F R + + V VSGG DSM L + + D G + Sbjct: 54 RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 113 Query: 53 -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYA 108 + VDH LR + DE + V D + + + W N +P+ G + AARE RY Sbjct: 114 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 173 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------- 161 + + +++ AH DDQ E +R R+ G+ + + Sbjct: 174 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 233 Query: 162 ----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--- 214 + + RP L ++D+ N W EDP+N + R R+R +R + + Sbjct: 234 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 293 Query: 215 --ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLR 269 L+ + + R ++NA +M++ K LT+ I + L N+D L L Sbjct: 294 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFLSRYLA 353 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS 296 + RS + ++ ++++ Sbjct: 354 YVLQFVSQRHRPLRGRSAQLLIDYIRT 380 >gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645] gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645] Length = 328 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 137/311 (44%), Gaps = 20/311 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVSGG+DS+ LL +L ++ R G + A+ VDH LR+ + + ++V+ + +L Sbjct: 22 VMVAVSGGADSVALLRSLAAI---RESGPGRLIAVHVDHNLRKESDTDAQFVAQLAQQLG 78 Query: 82 IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V ++ S P G+ AAAR ARY + A A ++TAHT DDQ+ETV R Sbjct: 79 IEGILGRVDFELSGPD-GIEAAARSARYGFLRTFAMDHGARYVVTAHTADDQIETVLHRI 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + GLSG+ +L + + RP L RR ++ ++L ++ D +N + RF Sbjct: 138 LRGTSL--AGLSGIPRARELELGISLLRPMLSIRRSEVEAYLADLGQTFRHDETNDESRF 195 Query: 200 ERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 R R+R + + A ++ + + R V + L+ L + Sbjct: 196 FRNRLRNDLLPLLRDAYLPQVDQSLLRLAIGAAECREYVETQASQLLDVCLMRETDESVT 255 Query: 252 ISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVV 308 + L L + + + S+ E + + + G + Sbjct: 256 LDAKKLGTAPPFLAKEACVLLWKQHAWPRQSM-SREKWEALWTLITGDSPAPFELPGGIR 314 Query: 309 IDRRANFLWIT 319 +++ L +T Sbjct: 315 AEKKGEQLTLT 325 >gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 740 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 141/375 (37%), Gaps = 56/375 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I VAVSGG+DSM L++ L L K A++VDH LR + E V+ +C+ Sbjct: 13 PIAVAVSGGADSMALMLLLREYLHGNRI-KTPLLAVTVDHQLRIGSSREALEVAKICAER 71 Query: 81 R-IAHS--VVSWKNSKPQTG-------------------LMAAAREARYALISEHAKTIN 118 I H V W + + AR+ RY L+ Sbjct: 72 GGITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRRVCLEYG 131 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILYDLNL----- 163 + AH DQLET R R G+ L G+ D + L Sbjct: 132 VRCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKGLDSDYS 191 Query: 164 -WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + RP L ++++ + + +W DPSN D ++RVR+R+ ++ + + Sbjct: 192 ATLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRVKREQGAEVLDL 251 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL----------NIDSTLLFYLLRVSA 272 F +V + A + + + D++ N+ LL+ LL + Sbjct: 252 FARFQVSSDKAKKEFALIERAMLRKYTVTWGPDLVVLRLAVFHDPNMFEELLYRLLSIII 311 Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVID--RRANFLWITRA-VRNLPTL 328 G + + P S+ R++ L+ + G +++G I+ + + L I V +P Sbjct: 312 VHIGTKETPPRLASVVRLVRDLQRLESGKQITLGGCRIECILKGHQLAIQPEQVAPVPGF 371 Query: 329 ---ILYPEETTVWDG 340 ++ P W Sbjct: 372 FGHVVKPGHPLKWPN 386 >gi|292492700|ref|YP_003528139.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4] gi|291581295|gb|ADE15752.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4] Length = 442 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 125/337 (37%), Gaps = 15/337 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F+R L + VA SGG DS LL +L + I SA VDH L + Sbjct: 6 DRLLEFLRQLHFCHGYRVAYSGGLDSQVLLYSLVQLRPQ--LPGIALSAFHVDHGLSSRS 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ + CS L + V+ N++P G A + + ++T Sbjct: 64 GQWSQHCRETCSELGVGCEVIKV-NARPAKGESPEAAAREARYAALRTRVEKGECLLTGQ 122 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R G L+ M + + L + RP L R +++++ Q + Sbjct: 123 HQDDQAETVLLQLLRGAGPHG--LAAMARVMPFGEGL-LLRPLLPFSRAELKAYAEQEGL 179 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIPKYL 242 W EDPSN D F+R +R V + + +A + + Sbjct: 180 VWIEDPSNFDVGFDRNYLRHHVLPLLRQRWPGLGRTLSRAAGHQADAAWILDHQAQQELI 239 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299 TV Q + + LLR G + LP ++R++ L + Sbjct: 240 TVSDGEPGLSVQGLQGLAPPQRRNLLRHWFKREG--LPLPDSAHLQRILEEVLPASEDAQ 297 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 V+ + R N L+ + + ++ E Sbjct: 298 PLVAWPGAEVRRYRNRLYTQKPLSPHEATMVLAWEGV 334 >gi|192362306|ref|YP_001981512.1| mesJ protein [Cellvibrio japonicus Ueda107] gi|190688471|gb|ACE86149.1| mesJ protein [Cellvibrio japonicus Ueda107] Length = 455 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 144/381 (37%), Gaps = 45/381 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+ V SGG DS LL AL + ++ A+ V+H + A D + + Sbjct: 46 APSRWWVGFSGGLDSAVLLHALVQLQ-----LPVQICALHVNHQISPHADDWQAHCEALA 100 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +RL +A G+ AAR+ARY + ++ + ++TAH DDQ ET+ + Sbjct: 101 ARLGVAFYAEKVWVINRGKGIEDAARQARYHIFEQYLAPHDC--VLTAHHADDQAETLLL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R +G L+ M W+ RP L R+ + + + W +D SNTD Sbjct: 159 RLMRGTGPRG--LAAMAGKRPLGQG-WLVRPLLSFSRKLLEDYARIHRLVWVDDESNTDL 215 Query: 198 RFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++R +R+ + + K ++ +L + L + L + + Sbjct: 216 HYDRNYLRQQLLPLLQTRWPGFQRKWQQTAELCAANEQLLEELAQEDLGCLDERAERLGR 275 Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLP---GYRSMERVMLFLKSGKRGCVSIGR 306 I L + LLR I ++P ++ +++ + + + ++ + Sbjct: 276 SISLDKWLAMSEARRRNLLRYWLRI--QHFAVPEQLHWQQLQQQLTLAREDAQVHITWDQ 333 Query: 307 VVIDRRANFLWIT-------------------RAVRNLPTLILYP---EETTVWDGRYQF 344 V + L++ R +LPTL + E GR Sbjct: 334 VSLRVYRQRLYVMPKHAKPGLLQWCTANQGAGRLRADLPTLDIRLRQGGERCRPAGRSHS 393 Query: 345 QNLSDSLIQIGPQSYRKADVP 365 Q L L + G + + + +P Sbjct: 394 QTLKKLLQEAGIEPWLREQLP 414 >gi|326792451|ref|YP_004310272.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427] gi|326543215|gb|ADZ85074.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427] Length = 457 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 28/337 (8%) Query: 1 MFLSPIESVRFFVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + ++ F+ L+ + +++ VSGG DSM LL ++ + ++ Sbjct: 1 MAEQIHKKIKRFIEKNQLIEQGNELILGVSGGMDSMMLLHYFYTY---KEVYQVSLKVAH 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113 + H +RE+A + V + C I + + + RE RY Sbjct: 58 IHHGIRESADLDAALVEETCRAYHIPFYRHNCNIKALAKQKKCSEEEIGREERYNFFISL 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 I+TAH +DQ ET+ MR R KG+G + I RP L Sbjct: 118 L--NPGAKIVTAHNMNDQAETMMMRFFRGTDIKGLG-------GILPKRGQIIRPLLDVT 168 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQD 225 R++I S+ + + D +N + R ++R + + L + +++ Sbjct: 169 RKEIESYCKVHQVPFRHDETNFMPIYTRNKIRLECTPYIESAINPSFIKVLGEHSQLYRE 228 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + L + +I+ + + + + L ++ G + + Sbjct: 229 EEDFLEGYTKSLFELVASQQETAIVLDEKLLKSYHPYMQKRLFFMAIEKLTGSLKDFSSK 288 Query: 286 SMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRA 321 +E + ++ + + +V + + + L +T+ Sbjct: 289 HLESALALMEGQSGKEIHLPKQVTLRKIYDQLILTKE 325 >gi|154490240|ref|ZP_02030501.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC 43184] gi|154089132|gb|EDN88176.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC 43184] Length = 444 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 80/349 (22%), Positives = 136/349 (38%), Gaps = 29/349 (8%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR ++ R L +LV VSGG+DS+ LL L A + LR Sbjct: 3 DVVRAYIEKYRLLTENRPVLVGVSGGADSIALLTILVE-------SGYSCIAAHCNFHLR 55 Query: 64 -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + + + ++V + +L + + + AARE RY E Sbjct: 56 GDESLRDEQFVREYARKLDVPFLMTDFDTRKYAADRHLSIEMAARELRYGWFEEQRAATG 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A + AH DD +ET+ M R +GM + + N ++ RP L REDI Sbjct: 116 AQAVAVAHHRDDSVETLLMNLVRGTGIRGM-------SGIRPRNGFVVRPLLAVSREDIL 168 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +L R +++ D +N D + R +R V + L + +K R + + A + Sbjct: 169 EWLAGRGLTYVTDSTNLSDAYTRNFIRLRVLPL-LEEINPSVKD-AIARTSEHLSAAEAV 226 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KS 296 ++ R+ + D L+I + L+ Y + + E V L L +S Sbjct: 227 YLHVVEEARNAVVEQGDRLSI-AALMRYPSPDAILYELLKTYGFTRPVAEDVYLSLTKES 285 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 GK S R++ DR ++L ++ V+ VW G + Sbjct: 286 GKTFFSSTHRLIKDR--DYLLLSPLVKEEVREYTLTGGEKVWSGPVELS 332 >gi|300172734|ref|YP_003771899.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811] gi|299887112|emb|CBL91080.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811] Length = 435 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 26/299 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + ++ ++ + A ++VAVSGG DS+ LL L L D K V++ LRE + Sbjct: 3 KKIQKQLQLYHWEATVIVAVSGGVDSVVLLHTLRQQLPDA-----KLVVAHVNYHLREES 57 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++V + + +W N P + AR+ RY + A + T ++ AH Sbjct: 58 DADEKFVHHLADKYHAIFEQTAWLNV-PDIAVEKQARDFRYQFFEQLASKYHTTTVVVAH 116 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R M L+GM N I RPFL ++++ S+ + N+ Sbjct: 117 HADDQAETVLLKLIRGGQL--MQLAGMSQ-----QNRRIVRPFLCITKQELVSYAQKHNL 169 Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +W ED +N D + R +R+ + + + F + K ++ + + Y+ Sbjct: 170 NWHEDKTNHDAMYTPRNFLRQIIIPQLKKINPRVVPHINSFAEQIKKQDDLITAQVELYV 229 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 S I L + T+ Y+ + I + +V+ L + K+ Sbjct: 230 QTIENSWQTIPNIWL--EPTIKHYIQKK-------GIYQFKQAQILQVVQLLNNDKKPT 279 >gi|310829345|ref|YP_003961702.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612] gi|308741079|gb|ADO38739.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612] Length = 470 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 135/360 (37%), Gaps = 35/360 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76 IL+ VSGG+DS+ LL L ++ +A ++H +R A +E +V Sbjct: 17 AGDRILIGVSGGADSLALLYFLKKYQ---GVLNVEIAAAHLNHEIRGKAAEEDHAFVKQF 73 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + I S K + L A REARYA E + + H DDQ Sbjct: 74 CIKQSILLYDKSVDVIQLAKKNKISLEEAGREARYAFFKELQSSEAYNKLALGHHLDDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R KG ++GM + N I RP L ++ + S+ + + + D Sbjct: 134 ETVLMRLIRGTGVKG--VAGMLSETKGESN--IIRPLLCVDKKTVISYCKKNGLHYRTDN 189 Query: 193 SNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-V 244 +N + R ++R R + L + + N++A L +T Sbjct: 190 TNFETDVTRNKLRLEIIPMLREINPRVEEHLSEFAMLAHEYEQFLQNSIAELSTYMITKK 249 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVS 303 R + + L + L LLR G + Y + V L SGK + Sbjct: 250 SNRVYLNLEMWRLQVP-LLQKELLRQMVFQFKGSLKEIEYNHILCVKEQLLSGKTVWELH 308 Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL---ILYPE------ETTVWDGRYQFQNLSDSLIQ 353 + + RR WI +P + L P+ + +W + +SD I+ Sbjct: 309 LPHGMQAVRRYELFWIEEKKAVVPEIGCYELLPDKAYYFSKEGLW---IKLTVISDDSIK 365 >gi|330936799|gb|EGH40956.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 445 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---------- 253 +R V + + A +L L + A S Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTTRHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261 Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 I + + LR A + E + + + R Sbjct: 262 LGPIAALSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLADGTLHRA 320 Query: 313 ANFLWITRA 321 N +W A Sbjct: 321 QNCIWWVPA 329 >gi|237800161|ref|ZP_04588622.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023018|gb|EGI03075.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 445 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 110/310 (35%), Gaps = 20/310 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L + Sbjct: 30 VGFSGGLDSTVLLHLLAELARSENLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALGVP 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 VS K +P + AAR+ARY +E + +++ A DDQ ET+ R R Sbjct: 88 FEQVSVKV-EPGASVEQAARQARYKAFTE--QLGAGDVLLAAQHRDDQAETLLFRLMRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ Q ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRAL---GRGHLVRPLLVVSRIELEAYAHQHGLNWIEDPSNNDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + + L++ Sbjct: 202 LRGQVLPLLTSRWPQASASLARTAEHLGEAQQLLDELALLDLANAQATTAFAWLDLPVLG 261 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L L +SAA + + R+ + R + + R Sbjct: 262 LKPLAGLSAARQRNALR-HWLAPLTRLPDTDHWAGWVALRDAAQDARPLWRLADGELHRT 320 Query: 313 ANFLWITRAV 322 + LW A Sbjct: 321 QDCLWWLPAA 330 >gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2] gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2] Length = 464 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 17/249 (6%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ R L A ++V VSGG D L LH + S R K++ A VDH Sbjct: 2 VDKVRAFIDRHRLLTEGATVIVGVSGGPD---SLALLHLLSSLRDEWKLQLVAAHVDHMF 58 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C+ RI V + G AAR RY +E K Sbjct: 59 RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG +G+ + + ++ RPFL R +I Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFHGS-YLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234 + + ++ DPSN D + R R R + + + L+ + +++ ++ + + Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFL 235 Query: 235 AMLIPKYLT 243 L L Sbjct: 236 EELATDALN 244 >gi|148654498|ref|YP_001274703.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1] gi|148566608|gb|ABQ88753.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1] Length = 682 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 49/340 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S ++R + R + ++VAVSGG DS+ LL L ++ ++ + +DH LR Sbjct: 7 SVRATIRRY-RMIAPGKPVVVAVSGGPDSLCLLDVLANLCAELM---CTLHVVHLDHRLR 62 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + E +V++ RL IA +V V + L AA R ARY L++ A TI Sbjct: 63 GAQSAAEAAFVAETAERLGIAATVEAVDVRALAVERNLNLHAAGRLARYRLLARVALTIG 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------ 160 A + TAH DDQ ETV + R +G L G+ + + Sbjct: 123 AQAVATAHHADDQAETVLLHLVRGAGVEG--LRGIRPVVAWGEWRVIGDMDDDDLAALPK 180 Query: 161 --LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDI 211 + RP L R DI ++ ++ + DPSN D R+ R R+R+ V Sbjct: 181 DEHAPRLIRPLLHVARADIETYCVEHGLVPRRDPSNVDRRYLRTRIRQDVLPTLATLNPQ 240 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + AL + + + + TV + + ++ L +R + Sbjct: 241 IVAALGRTASACAETADFIEQELDRVWDALTTVQTDRLSFDGRRWRDLHPALQHAAIRRA 300 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + GG +L GY + R C S+GR V R Sbjct: 301 YTLIGGSDTL-GYDDVMR----------ACESVGRSVGRR 329 >gi|327399626|ref|YP_004340495.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411] gi|327182255|gb|AEA34436.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411] Length = 322 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 25/330 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +E+ + L I VAVSGG DS+ +L+ L+++ ++ + + +H L Sbjct: 5 LKKLEAFAKEHKLLSEKLKIGVAVSGGPDSVFMLMLLNTLAQK---YTLELAVLHFNHKL 61 Query: 63 RETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 RE A+DE +V + S L + V + + + + AR RY E +N Sbjct: 62 REEAEDEEIFVGKLASSLGLKFLKAEYDVGAFSRQNKLSIEDGARRKRYEFFYESKTKLN 121 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 +I T HT DD ET+ M R + G+ + L + RP L +++I Sbjct: 122 LDVIATGHTKDDVAETLLMNLIRGSSTDGL-------SSLKPKRGFFIRPILCFEKQEIL 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +FL + NI + D SN D F+R ++R + + + + + + + L Sbjct: 175 NFLNKNNIQYKIDNSNADTYFKRNKIRAELLPLLKNINPNIVDTLFRSSLILAEDSSYLK 234 Query: 239 PKYLTVHMRSI------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 K ++S + I + +N +L +L ++ +R+ ER+ Sbjct: 235 KKAEVEFIKSTKITADKVIIDINNINTSKAILKRVLNMAIKRLLNSEYNLSFRNTERLTK 294 Query: 293 FLKSGKRGCVSIGRVVID--RRANFLWITR 320 K + R +I R+ + L I + Sbjct: 295 VFTEDKNLSL---RKLIKAYRKNDKLIIEK 321 >gi|313905490|ref|ZP_07838854.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6] gi|313469674|gb|EFR65012.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6] Length = 507 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 25/299 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCSRL 80 + V +SGG+DS+ LL+ L +L S G+ + +A+ ++H LR A D+ R+V ++C+ Sbjct: 23 VCVGLSGGADSVALLLVLKEILKMGSVGEYRLAAVHINHNLRGQAAEDDSRFVRELCANR 82 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT--------LIMTAHTF 128 I + V+ + GL A RE R+ + AK I AH Sbjct: 83 EIPLKIYSCPVAEYAGVRKIGLEEAGREVRHEKFALAAKEFAEEMEADPAKAKIALAHHA 142 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ R+ R + GL+G+ + L + RP L R++I ++L Q+ ++W Sbjct: 143 DDQAETLLFRAARGSSL--SGLAGIRPSATLGE-LLLIRPLLSVTRDEIEAWLRQKGVNW 199 Query: 189 CEDPSNTDDRFERVRV--------RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 D +N D+R+ R + R V L L + + + Sbjct: 200 RTDETNADERYARNAIRGTVIPCLREKVNGRAALHLALAAEDMAAADAYLKGEAEKIETL 259 Query: 241 YLTVHMRSI-IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 YL + ++IS +L L Y+L + G G + + L Sbjct: 260 YLRKDLSGESVSISAQLLKCPEILQNYVLMDALEAAAGYRKNLGREQLTELKDLLAEPA 318 >gi|189467232|ref|ZP_03016017.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM 17393] gi|189435496|gb|EDV04481.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM 17393] Length = 443 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 41/351 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M IE + ILV +SGG+DS+ LL L + A + Sbjct: 1 MNKKKIEQYIDQEKLFTREDKILVTLSGGADSVALLRLLLDM-------GYTCEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR + + + +V ++C +L + V ++ K + AARE RYA + Sbjct: 54 HLRGDESVRDEMFVRELCLQLVVPLHVQHFQTMEEAEKRHISIEMAARELRYAWFEQLRL 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A +I AH DD +ET+ + R G+ + N I RP L R+ Sbjct: 114 QQGADVIAVAHHKDDSVETLLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLDRK 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 +I +L + S+ D +N D + R ++R + + +L + D + Sbjct: 167 EITEYLQEIGQSYVTDSTNLQDEYTRNKIRLNLLPLMQEINPSVKESLLRTSEHLNDAAL 226 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + K T I A+ Q+ TLLF +L ++ Sbjct: 227 LYKKGIEEGKQKVQTEQGILISALLQEP--APETLLFEILSPLGF---------NSAQIK 275 Query: 289 RVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + L + GK RV+ DR L I + + P++ + Sbjct: 276 DIFTSLNGQPGKIFLSREWRVIKDRE--LLLIEPVYSEDASTVFSPDDPAL 324 >gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946] gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946] Length = 524 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 94/394 (23%), Positives = 148/394 (37%), Gaps = 43/394 (10%) Query: 1 MFLS---PIESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54 MF S P F +SL ++ AVSGG DS+ LL L ++ + Sbjct: 1 MFRSEATPHLIEARFSQSLAELEVRGSVVAAVSGGGDSVALLYLLKAL-------GFEAI 53 Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI 110 DH LR ++ +E +V + L V + + + L A ARE RYA + Sbjct: 54 VAHFDHALRPSSAEEAVWVQHLAEALGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFL 113 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 S AK I+TAHT DDQ ETV ++ R T + + RP L Sbjct: 114 SRVAKKYRTEAILTAHTQDDQAETVLLQLVRGTG---------RATGIRKRQGRVVRPLL 164 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLR 227 R ++R +L + SW EDP+N D +R +R V + + +F ++R Sbjct: 165 GFTRAELRGYLRAKGASWLEDPTNQDPALDRNYLRHEVLPRLEVRFRGAVGSLARFAEVR 224 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDIL--NIDSTLLFYLLRVSAAICGGQISLPGYR 285 + + + L R + + I L +R G P YR Sbjct: 225 QAEDPLLEEGAAQRLLPDRRWPVPAYRAIPLERAAPGLRRRAIRQILERLGIH---PEYR 281 Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 + V L+ + G VV+ R+ L+ A L P T G Y Sbjct: 282 LIADVETALEG--QPRTLPGGVVVRRKGGTLFFLTA----EAPPLEPGWRTPEPGDYLEI 335 Query: 346 NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379 L + + + +P+ + + RA++S Sbjct: 336 PLGRKRL---VEFLAERGLPAELKRVWPIRAVAS 366 >gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424] gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424] Length = 446 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 18/276 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E + F + +A+SGG DS+ L L + + ++H LR+ Sbjct: 5 VELIENFDVLWTKEDRLALALSGGVDSIVLFHLLVT---KYRHTYKELVVFHINHGLRKE 61 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL 121 + +E +V S I + AR+ RY +E A N T Sbjct: 62 SYEEAEFVEKFVSNYDIRFYKKELEMNSLARDKHISEEMLARKLRYKAFNEMAAKENITK 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TAH +DQ+E + MR + + D NL I RP L +E + + Sbjct: 122 ILTAHHKNDQVENILMRLLTGRSMD---YNLAIDNKGRHGNLTIYRPLLNVLKETLEQYA 178 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLI 238 + N+ + D SN D + R +R + + + F + +N+ + + Sbjct: 179 QENNLKYYTDESNFDTDYTRNNIRHNIIPLLNDVSTVSFDNLINFAEYYKNINDELKTRL 238 Query: 239 -----PKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 L + ++ + ++L++ + +++LL+ Sbjct: 239 LANKDNYILEKNQEKVVLLRAEVLSLSAEEIYFLLK 274 >gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58] gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58] Length = 442 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR+ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +RR + + + A +A L L + D L++ Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309 L LR +A + + R+ + + + Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364 R A +W LP VW+ L + L ++ R Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369 Query: 365 PSGIPPIIAQRALSSM 380 G +A R + Sbjct: 370 RGGEVLALAGRGRRDL 385 >gi|292489208|ref|YP_003532095.1| cell cycle protein [Erwinia amylovora CFBP1430] gi|292898558|ref|YP_003537927.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946] gi|291198406|emb|CBJ45513.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946] gi|291554642|emb|CBA22328.1| cell cycle protein [Erwinia amylovora CFBP1430] Length = 433 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 24/357 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + ++ +L +L+A SGG DS LL L + R +++ A+ + H L Sbjct: 1 MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PQLQLRAVHIHHGLSPL 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A V + C R R+ VV + + G+ AAAR+ARY + + ++TA Sbjct: 59 ADGWVAHCQQQCDRWRVPLVVVRVQVDAREGGIEAAARQARYQALRQQLAA--GETLLTA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET+ + +R G+ + + RP L R+ + S+ + Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLL---GDHRHLRPLLAQSRQQLESWAQRYQ 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I W ED SN D R++R +R V + L+ + ++ L+ + L Sbjct: 174 IGWIEDDSNLDPRYDRNFLRLQVMPL-LNQRWPHFASAVARSAQLCGEQERLLDELLAES 232 Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSG 297 + +++ S +L + LLR I S+P +++R+ L ++ Sbjct: 233 LDALVDESGALCFTPLLTMSDARRSALLRRW--IARQHGSMPSRAALQRIWLEVACSRAD 290 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 C+ +G + R + L+ LP + W +Q L D L Q+ Sbjct: 291 AEPCLRMGSREVRRFRDRLYW------LPQRLPLGASQLAWPAPWQPLTLPDGLGQL 341 >gi|221133298|ref|ZP_03559603.1| tRNA(Ile)-lysidine synthetase [Glaciecola sp. HTCC2999] Length = 426 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 133/326 (40%), Gaps = 34/326 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + + + +A+SGG DS+ LL A+ + + V+H L+ A ++ Sbjct: 16 AFIQKRPVYLALSGGMDSVVLLNAVMQQWP--VDAPYPLTLLHVNHHLQADAALWAKHCQ 73 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + +R I V+ + P + + AR ARY + +++ A DDQ+ET Sbjct: 74 SLANRYNIPCHVLDVQLDSPNKNIESQARHARYTALFNAMSHNG--VLLVAQHADDQVET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN---------LWISRPFLRCRREDIRSFLLQRN 185 ++++ +R G GL+G+ + + + I RP L + I + Sbjct: 132 LFLQLKR-----GAGLTGLSGMVPWQSGFQQFGAHPSMHIYRPLLGVTQAQINEYASVHL 186 Query: 186 IS--WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 W +DPSNTD +F+R +R V + L + + + K + V N L+ + Sbjct: 187 SPNDWVDDPSNTDTKFDRNFLRNDVIPL-LSSRWKQWTKKVVQSMSVLNEEHTLLNEVTQ 245 Query: 244 VHMRSIIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297 + + + + I+N +T ++R A ++++ ++ K Sbjct: 246 ERLLACLNTDKLIVNKFTTYSSSWQKQIVRHFALEIANVA--LSQAQLQQLFQIIHAKED 303 Query: 298 KRGCVSI-----GRVVIDRRANFLWI 318 RG +S+ +V +R L++ Sbjct: 304 ARGRLSVKNNTNAQVHFERFQGQLYV 329 >gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002] gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002] Length = 351 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 10/316 (3%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL ++ VAVSGG DS+ L L S ++ K+KF VDH LR + E Sbjct: 32 FSSSLNSEENLAVAVSGGPDSLALAY-LAKCYSIKNKIKVKFFL--VDHRLRNESTKEAT 88 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V + ++ I V+ WK KP + + AREARY+L+S+ K N ++ H +D Sbjct: 89 LVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDL 148 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E +R R G+ +S D +L I RP L ++ D+ + + +D Sbjct: 149 VENFLIRVVRGSGLNGL-VSFNKSVKYKDEDLNILRPLLNLKKNDLINISKIVFKFFIKD 207 Query: 192 PSNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVH 245 PSN ++ ++R R+R + +DL L L + +D + V L + Sbjct: 208 PSNINEIYKRTRIRTLLESLEKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIK 267 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + +S + + ++F L G + +S+ ++ + +++G Sbjct: 268 TKDTYILSHNFFDQSHEVVFRSLTFVIQKIGKKYYPVRGKSINELINRIILKTFSKITLG 327 Query: 306 RVVIDRRANFLWITRA 321 ++R + I+R Sbjct: 328 GCFVERVNETILISRE 343 >gi|331003927|ref|ZP_08327416.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411947|gb|EGG91347.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon 107 str. F0167] Length = 497 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 26/221 (11%) Query: 7 ESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++ F+ L+ I++ VSGG+DS+ LL L + I+ + ++H +R Sbjct: 5 DALSHFIEENQLIKKGDRIVLGVSGGADSICLLNILSCIQKALE---IRLFVVHINHGIR 61 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI- 117 E AK + +V D C RL + + K + A R+ARY+ AK I Sbjct: 62 GEEAKRDEDFVRDFCKRLNVEFFAFHYDIKKMAREQKISEEEAGRKARYSTFDTVAKKII 121 Query: 118 ---NAT----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A I AH DD ET+ R G+ + N I RP L Sbjct: 122 QKEGADAQNVKIAIAHNKDDNAETILHNLSRGSGISGL-------KGILAQNGNIIRPLL 174 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 R++I +L + NI + D +N ++ + R +R V I Sbjct: 175 SFSRQEIEEYLSKNNIEYMTDSTNLENEYTRNVLRNEVFPI 215 >gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062] Length = 346 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 10/316 (3%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL ++ VAVSGG DS+ L L S ++ K+KF VDH LR + E Sbjct: 27 FSSSLNSEENLAVAVSGGPDSLALAY-LAKCYSIKNKIKVKFFL--VDHRLRNESTKEAT 83 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V + ++ I V+ WK KP + + AREARY+L+S+ K N ++ H +D Sbjct: 84 LVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDL 143 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E +R R G+ +S D +L I RP L + D+ + + +D Sbjct: 144 VENFLIRVVRGSGLNGL-VSFNKSVKYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKD 202 Query: 192 PSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVH 245 PSN ++ ++R R+R + +DL L L + +D + V L + Sbjct: 203 PSNINEIYKRTRIRTLLEFLAKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIK 262 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + +S + + ++F L G + +S+ ++ + +++G Sbjct: 263 TKDTYILSHNFFDQSHEVVFRSLTFVIQKIGKKYYPVRGKSINELINRIILKTFSKITLG 322 Query: 306 RVVIDRRANFLWITRA 321 ++R + I+R Sbjct: 323 GCFVERVNETILISRE 338 >gi|304312484|ref|YP_003812082.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1] gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium HdN1] Length = 463 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 23/312 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LV SGG DS LL S + A+ V+H L A ++ D+C Sbjct: 20 GRLLVGFSGGLDSTVLLYLARRWSLQSS---VPIVAVHVNHQLSAHAFAWQQHCVDLCEA 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 IA + G+ +AAR ARY + AK + +++ H DDQ+ET ++R Sbjct: 77 WGIALHCEAVHVDAHGVGVESAARAARYQVFQRLAKP--SDVLLLGHHRDDQVETFFLRL 134 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +GL+ M D + L I RP L + + F + +W ED SN DR+ Sbjct: 135 MRGSGV--LGLASMDDVSEW-QGLCIVRPLLGLSKSVLHEFAKSQQWTWVEDESNQSDRY 191 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R +R V L + + + V+ L+ + + + ++ I ++ Sbjct: 192 DRNFLRLEVLPR-LAQRWPSSAEAVERSVRHCREAQGLLDELAAMDVETLCQTDGGI-SV 249 Query: 260 DSTLLFYLLR----VSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGR------ 306 D L L R + + ++SLP + VML V + Sbjct: 250 DRLRLLSLSRARNVLRYWLRSFRLSLPSEARLNETLAVMLQSAEDAAPLVLLQDTGLRQS 309 Query: 307 VVIDRRANFLWI 318 V + R +++ Sbjct: 310 VELRRFDGAIYV 321 >gi|327480171|gb|AEA83481.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri DSM 4166] Length = 441 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 104/306 (33%), Gaps = 20/306 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL AL + ++ I+ AI V H L+ + VC +L + Sbjct: 34 VAFSGGLDSTVLLHALTRLSERQALPVIR--AIHVHHGLQAAGDHWPAHCQRVCDQLGVT 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + P L AAR+ARY S A L++T DDQ ET+ R R Sbjct: 92 LEIVRVRVV-PGASLERAARDARYQAFS--ACVGEGELLLTGQHRDDQAETLLFRLLRGA 148 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ ++ + RP L R ++ + ++W EDPSN + R Sbjct: 149 GVRGLAAMPDVRSM---GRGSLVRPLLEVSRAELEDYARANGLAWVEDPSNQQLEYSRNF 205 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +RR V + + A +L + LN+ S Sbjct: 206 LRRQVLPLLQQRWPRAASNLARTAALMAEAQHLLDELAQQDLAAAQAGSDCRWLNLPSLA 265 Query: 264 L-----------FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L LR A + E + K + + R Sbjct: 266 LAPLRELTSARQRNALRHWLAGLTLAPDENHWAGWE-CLRDAKPDATPRWRLEGGELQRS 324 Query: 313 ANFLWI 318 +W Sbjct: 325 GERVWW 330 >gi|297181898|gb|ADI18075.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Acidobacteriales bacterium HF0200_23L05] Length = 485 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 67/381 (17%), Positives = 142/381 (37%), Gaps = 40/381 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++VA+SGG DS+ L L + + + + F + ++H LR A ++ + Sbjct: 31 RLIPQGGRVVVALSGGGDSVVLAHLLCEMSAIARWSVVGF--LHINHQLRAVANEDADFC 88 Query: 74 SDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + V + + A RY + + ++ A + T HT D Sbjct: 89 RQLSDELHVPFLIEAVNVRAMSRDRGISIEEAGHRLRYEIFNRICRSHLADCVATGHTRD 148 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ETV +R R +G+ + + N ++ RP L R+++R +L R + Sbjct: 149 DLAETVLLRLIRGAGPRGL-------SGIRPRNGFVVRPLLDVTRKELREYLQVRGLPHR 201 Query: 190 EDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV- 244 ED +N D R R+R F++ + + + + + + + + + Sbjct: 202 EDATNEDTSVARNRIRHSLIPFLKTNFSEGIVDVLAREASIARADDEWMEREVDQAVGQM 261 Query: 245 --HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + I D + + + L + + GG + R+ +++ + Sbjct: 262 VCYGEEVADIDCDAIAKLPTALSRRVSKRVLEHIGGHPV--SFDQTNRLFSLIRTSSQSD 319 Query: 302 VSI---GRVVID---RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 VS+ G +I R W RA + +++ +++ Sbjct: 320 VSVDFPGSRLIRSSNRTQLVRWQGRAGNRQSRVSE-----------FEYALPIPGEVKVP 368 Query: 356 PQSYRKADVPSGIPPIIAQRA 376 + PSG P ++ R Sbjct: 369 ELGEIISATPSGSVPGLSARG 389 >gi|325679361|ref|ZP_08158946.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8] gi|324108958|gb|EGC03189.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8] Length = 444 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 132/386 (34%), Gaps = 36/386 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66 ++R F +LV +SGG+DS LL+ L + SA V+HC+R E A Sbjct: 12 TIRKF-HMAEKGERLLVGLSGGADSAALLLCLDEL-------GYDVSACHVNHCIRGEEA 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLI 122 + + +C L I V AR RY + + I+A I Sbjct: 64 DRDQHFCERLCEGLGIGIIVRRVDVPAYCRANPVSEEEGARLLRYNAL----QEISADKI 119 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 TAH DD LET R KG+ + + I RP + C R DI ++L Sbjct: 120 CTAHNLDDCLETTLFNLARGSGLKGIA-------SIPPVRGNIIRPLIECSRADIEAYLA 172 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +R + D +N D + R ++R V + M+ F + A L Sbjct: 173 ERGQDFVTDSTNLLDEYSRNKLRHKVVPVLREINPSLMETFAKTLGFLREDSAFLEKTAD 232 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKRG 300 SII I L Y LR I +E + + +G + Sbjct: 233 KAFEESIIGDGFSRKTIRG--LDYPLRRRVIMRILAKNDIGISQDKIELIEQLVNNGGKA 290 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR---YQFQNLSDSLIQ 353 V +++ L+I +++ P+ +W R ++ + Sbjct: 291 SVK-SECFAYTKSDILYIYNENNRPKSAEDEVVIRPDTVIIWQNRHICFKIIEIDGKFEN 349 Query: 354 IGPQSYRKADVPSGIPPIIAQRALSS 379 + + I +I R + Sbjct: 350 VNKKFANSCLDYDKIRGVIVLRKRRA 375 >gi|319955124|ref|YP_004166391.1| tRNA(ile)-lysidine synthase [Cellulophaga algicola DSM 14237] gi|319423784|gb|ADV50893.1| tRNA(Ile)-lysidine synthase [Cellulophaga algicola DSM 14237] Length = 435 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 27/310 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75 + H L+A SGG DS+ L+ ++ ++FS + LR + + +V Sbjct: 16 LKNKHFLLACSGGIDSVILVHLCKAI-------GLEFSLAHCNFNLRGLESDADEAFVKL 68 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + +I V S+ ++ + L AARE RYA SE ++TAH DD Sbjct: 69 LAADFKIPFYVTSFDTAQYMNTHKVSLQIAARELRYAWFSELQSKHKIPTLVTAHHADDS 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + R G+ T + + I+RP L RE I + + ISW ED Sbjct: 129 LETFLINLSRGTGIDGL-------TGIPERTPTIARPLLLFSREQILDYAHRFTISWRED 181 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN + ++ R ++R + + F + + A L+ ++ ++ Sbjct: 182 KSNQETKYLRNKIRHKIVPHLKELHPSFLPNFLQSQQHLAE-TASLLNHHIQELRATLFK 240 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISL--P-GYRSMERVMLFLKSGKRGCVSIGRVV 308 D + L+ A+ L P G+ E ++ L + + Sbjct: 241 KDGDGFVVS----IAALKKQNALESLVYHLFKPFGFSDAEALIALLSAMSGKELHSVSHR 296 Query: 309 IDRRANFLWI 318 + + + L++ Sbjct: 297 LLKDRDNLYL 306 >gi|163801796|ref|ZP_02195693.1| cell cycle protein MesJ [Vibrio sp. AND4] gi|159174304|gb|EDP59108.1| cell cycle protein MesJ [Vibrio sp. AND4] Length = 409 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 17/303 (5%) Query: 35 LLIALHSVLS--DRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-N 91 +L L I A+ V H L A + ++ + V + Sbjct: 1 MLELLSRYQQVNATDSNPIHCHAVYVHHGLSANADEWAAKCLTWAKQVGMTCFVERVTLD 60 Query: 92 SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 ++ + AR+ARY +++H + L++T DDQ+ET + +R KG LS Sbjct: 61 TQSGESIELLARDARYQALAKHIQA--GDLLLTGQHADDQVETFLLALKRGSGPKG--LS 116 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD- 210 M +++ + + + RPFL +RE I + ++ + W ED SN D RF+R +R + Sbjct: 117 SMAESMPFA-DGTLVRPFLTVKREQIEAVAKEQGLDWVEDESNQDTRFDRNFLRHRILPT 175 Query: 211 --IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YL 267 +++ +++ L + + L+ ++S +++S L++ S L L Sbjct: 176 LSERWPSIHHAVQRSAALCAQQEALLDELLDAVFERALQSDLSLSIGELSLHSELARARL 235 Query: 268 LRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 +R+ A S+P + + + + + + + R N L+ + Sbjct: 236 VRMWLAKL--NASMPTQVQLNLIWNEVALAQQDANPKLQLKQGEVRRFQNCLYWVTETAD 293 Query: 325 LPT 327 + T Sbjct: 294 VTT 296 >gi|315650239|ref|ZP_07903312.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487484|gb|EFU77793.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 495 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 126/345 (36%), Gaps = 40/345 (11%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+++ F++ + I++ VSGG+DS+ LL L+ + + +I+ + ++H + Sbjct: 4 IDTLSHFIKDNNLIEKEDRIVLGVSGGADSICLLHTLNEL---KKALEIRLFVVHINHGI 60 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI 117 R E A + YV + C +L + + K + A R+ARY +K I Sbjct: 61 RGEEASRDENYVREFCKKLNVEFFSFHYSIPKVADMLKISEEEAGRKARYDSFENVSKDI 120 Query: 118 NAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + I AH +D ET+ R G+ + N I RP Sbjct: 121 SKIEKIDISKIKIAVAHNKNDTAETMLHNLTRGSGISGL-------KGILAKNGRIIRPL 173 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMK 221 L R++I +L + I + D +N ++ + R +R V + ++ Y Sbjct: 174 LSFTRDEIEEYLDKNKIKYMTDSTNLENEYTRNILRNKVFPILAEHVNNNVINNFYKSAM 233 Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL-----FYLLRVSAAICG 276 + ++ K L +S +++ L + +L Y L+ Sbjct: 234 VANEADRYFEDSAQKFCEKNLKNTNKSGYRLNKSKLMKNPHILGTYIIRYALKEILKEKN 293 Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITR 320 I G +E + KS + + + + L Sbjct: 294 SGIKDIGMVHIEDIWQLAKSETGKRLDLKYDIRVYNDYEHLRFVE 338 >gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group] Length = 694 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 40/327 (12%) Query: 10 RFFVRSLV-----YPAHILVAVSGGSDSMGLLIALHSV--------LSDRSFGKIK---- 52 R F R + + V VSGG DSM L + + D G + Sbjct: 55 RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 114 Query: 53 -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYA 108 + VDH LR + DE + V D + + + W N +P+ G + AARE RY Sbjct: 115 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 174 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------- 161 + + +++ AH DDQ E +R R+ G+ + + Sbjct: 175 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 234 Query: 162 ----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--- 214 + + RP L ++D+ N W EDP+N + R R+R +R + + Sbjct: 235 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 294 Query: 215 --ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLR 269 L+ + + R ++NA +M++ K LT+ I + L N+D L L Sbjct: 295 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFLSRYLA 354 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS 296 + RS + ++ ++++ Sbjct: 355 YVLQFVSQRHRPLRGRSAQLLIDYIRT 381 >gi|153812536|ref|ZP_01965204.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174] gi|149831461|gb|EDM86549.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174] Length = 471 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 64/313 (20%), Positives = 121/313 (38%), Gaps = 32/313 (10%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ ++ V+ F+ L + I++ VSGG DSM +L L+ + R + + Sbjct: 1 MYKDTLQKVKRFMTETGMLQNCSEIILGVSGGPDSMTMLHILNGL---RDEFGYRLRVVH 57 Query: 58 VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISE 112 V+H +R A + + V +CS +I +V ++ + G A R+ R + Sbjct: 58 VNHGIRGKEALRDQQMVEKICSEWKIPCAVYNYDVPALALSWKMGTEEAGRKVRRIAFEK 117 Query: 113 HAKTINATLI------MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 + NA I AH +D ET+ R +G+ L LN I Sbjct: 118 --EKENAVAIPEQVRVALAHNQNDMAETMLHHLARGTGIRGL-------CSLKPLNGEII 168 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQD 225 RP L R +I +++ + +I D SN +D + R R+RR + + + + + Sbjct: 169 RPLLCLERSEIVNYVEENSIQTVLDSSNMEDDYTRNRIRRHILPLIEQEVNPRAVTHMAE 228 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQIS 280 A A + A + + ++ + Y++R + GG S Sbjct: 229 ASEIFGQAEAYFTKLAGEMAAGYRKAKDRYVLDHEFFKKETIIQTYVIREILEVTGGHQS 288 Query: 281 LPGYRSMERVMLF 293 ++++ Sbjct: 289 DLTSGHIKQIRDL 301 >gi|254374646|ref|ZP_04990127.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548] gi|151572365|gb|EDN38019.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548] gi|332678549|gb|AEE87678.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida Fx1] Length = 398 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + +C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQIC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269 >gi|15674260|ref|NP_268433.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS] gi|71909825|ref|YP_281375.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005] gi|94989520|ref|YP_597620.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10270] gi|94993407|ref|YP_601505.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10750] gi|61217414|sp|Q9A201|TILS_STRP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13621335|gb|AAK33155.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS] gi|71852607|gb|AAZ50630.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005] gi|94543028|gb|ABF33076.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10270] gi|94546915|gb|ABF36961.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS10750] Length = 428 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|28894923|ref|NP_801273.1| cell cycle protein [Streptococcus pyogenes SSI-1] gi|71902678|ref|YP_279481.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180] gi|61217343|sp|Q879R7|TILS_STRP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28810168|dbj|BAC63106.1| putative cell cycle protein [Streptococcus pyogenes SSI-1] gi|71801773|gb|AAX71126.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180] Length = 428 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|139472899|ref|YP_001127614.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo] gi|134271145|emb|CAM29355.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo] Length = 428 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLRY--LSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|293610423|ref|ZP_06692724.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827655|gb|EFF86019.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 466 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 23/312 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + L+ SGG DSM LL + + + I +DH L+ + + Sbjct: 24 AQEFSENSTFLIGCSGGMDSMLLLHLMSQIFPHK------IRIIYIDHQLQSKSAEWGEL 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+ +RL I +++ + + L A AR+ARY +H + +++ AH DQ Sbjct: 78 VAKQATRLNIPYTIQKVQVTD--GNLEAQARQARYYAYLQHLQAN--EILVLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R G+ D + +++ I RPFL RE I + Q I + +DP Sbjct: 134 ETVILRLLSGAGVDGLAAMQCID---HRVDMTIWRPFLDLTREQIAEWTTQLEIEYVDDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N D ++R R + L + KM++ + + ++ + L +++ Sbjct: 191 TNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLMQDASEILEEVLKADLQNCGTD 249 Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 +L + S LL S + G P + +ER+ ++ KS + + Sbjct: 250 ECLDLTWLLKLSSARQRQLL--SVWMKGDGQYRPAFEMVERLKNEVIASKSDAQAALHWN 307 Query: 306 RVVIDRRANFLW 317 + R ++L+ Sbjct: 308 QFYYVRYQHYLY 319 >gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01] gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01] Length = 440 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 20/306 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L + SAI V H L+ A + + VC+RL I Sbjct: 23 IAFSGGLDSSVLLHLLAAWARYEELPA--LSAIHVHHGLQPAADGWPEHCAQVCTRLGIP 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + + P L AAR RYA +E + + +++ A DDQ ET+ R R Sbjct: 81 LDIVRVQVA-PGASLEQAARRVRYAAFAE--RLGSGEVLLGAQHRDDQAETLLFRLLRGA 137 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L C R +++++ +R ++W EDPSN D+RF R Sbjct: 138 GVRGLAAMPASRPL---GQGSLVRPLLDCSRAELQAYAQRRGLAWVEDPSNADERFSRNF 194 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL---- 257 +R V + ++ A +L + + + R + A+ L Sbjct: 195 LRGQVMPLLAERWPQMTASLARSAGHLSEAQQLLDELAEMDLLAARGVCALPWLPLPSLD 254 Query: 258 -----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LLR A + + + + + R Sbjct: 255 LSAVTALSDARQRNLLRHWLAPMSRMPDSDHWAGWYDLRD-AAADATPIWKLADGELHRA 313 Query: 313 ANFLWI 318 LW Sbjct: 314 EGRLWW 319 >gi|66044608|ref|YP_234449.1| PP-loop [Pseudomonas syringae pv. syringae B728a] gi|63255315|gb|AAY36411.1| PP-loop [Pseudomonas syringae pv. syringae B728a] Length = 445 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 105/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLYLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCRTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + +++T DDQ ET+ R R Sbjct: 88 FESVRLQV-EPGASLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGRLVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L L + A S L + Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIAHAQAATSFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + + + R Sbjct: 262 LGPIAALSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLADGTLHRA 320 Query: 313 ANFLWITRA 321 LW A Sbjct: 321 QGCLWWVPA 329 >gi|306826400|ref|ZP_07459714.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782] gi|304431395|gb|EFM34390.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782] Length = 428 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDLEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|294673632|ref|YP_003574248.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23] gi|294473514|gb|ADE82903.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23] Length = 433 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 74/363 (20%), Positives = 140/363 (38%), Gaps = 34/363 (9%) Query: 6 IESVRFFVR--SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR F+ L+Y + LV +SGG+DS+ LL+ L + + A + L Sbjct: 2 LNKVRKFIEREKLLYRYDLHLVGLSGGADSVALLLILKDL-------GYRIEAAHCNFRL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + ++V ++C + I V+ + + + + AAR+ RY + + I Sbjct: 55 RGEESDRDEQFVRNLCKQHDIPLHVIHFDTKEYAALHKVSIEMAARDLRYGYFRQLCQDI 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + AH DD +ET+ M R G+ T + N + RP L R++I Sbjct: 115 GATDVCIAHHRDDAVETLMMNLSRGAGIHGL-------TGIRPKNDIVRRPLLCINRQEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +L + D SN + R ++R V + M + A + Sbjct: 168 LEYLDSIGQPYVTDSSNLEADVLRNKLRLMVLPLLEEIAPGAMANIYKTANYLREAEEVY 227 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KS 296 K IS + DS + + + E+++ + ++ Sbjct: 228 NKKIEDYKDN---FISDNKFYKDSDITPSMPSILHEWLS--PFGFNSTQTEQILDCMNET 282 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG---RYQFQNLSDSLIQ 353 G+ + R+V+DR + + + + PE T D ++F+ +D+ + Sbjct: 283 GREFLSATHRLVVDRE---FFEVEPITDPIKPLKIPETGTYRDEDQTAFKFEITTDTTVS 339 Query: 354 IGP 356 P Sbjct: 340 REP 342 >gi|225849954|ref|YP_002730188.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1] gi|254789038|sp|C0QU23|TILS_PERMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225646259|gb|ACO04445.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1] Length = 452 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 128/347 (36%), Gaps = 35/347 (10%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E+V+ + SL+ ILVA SGG DS L L I ++H L Sbjct: 5 KFLEAVKKY--SLISEGDRILVAFSGGIDSTVLTYLLIKFRDHLKISDIYL--AHLNHSL 60 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 R+ + ++ R+ D + + K + + ARE RY+ + + + Sbjct: 61 RKESDEDQRFCEDFAKKYGLEIFTKKVDIKSLAEKEKKSIEQKAREERYSFFRKVMEERS 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + T H D +ET+ M + + G+ + + I RP ++ I Sbjct: 121 INRLATGHHLSDLVETMIMWFIQGNRK------GIKGFRPKERD--IIRPLYLINKDQIE 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232 ++ ++ I + D +N + F R R+R + L L + F L + Sbjct: 173 NYAREKGIEYRIDITNFETDFLRNRIRHNIIPHIKGINPSLEGSLLTLSYFLSL---DDQ 229 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + K + I + +++L D L++ ++ G P YR + +M Sbjct: 230 YLEEESEKISQKFLNGKIEL-EELLVYDKALVYRAIQNWIYRKTGVY--PSYRQIMDIME 286 Query: 293 FL---KSGKRGCVSIGRVVIDRRANFLWIT--RAVRNLPTLILYPEE 334 + + K +S +I R + L+I + + P E Sbjct: 287 IIEKKEGTKSIRLSPEYNLIRRY-STLYIEKVKEKTEPYQYRIKPGE 332 >gi|170017773|ref|YP_001728692.1| ATPase [Leuconostoc citreum KM20] gi|169804630|gb|ACA83248.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Leuconostoc citreum KM20] Length = 435 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 141/342 (41%), Gaps = 35/342 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I + +R + A I+VAVSGG DS+ LL AL L D K V++ LR+ Sbjct: 2 INKIDEQLRRYAWEATIIVAVSGGVDSVVLLHALRQYLPD-----TKLVVAHVNYHLRKE 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + +V + + + A + W P + ARE RY + A I+ A Sbjct: 57 SDGDALFVRQLATTYQAAFEQIDWSIM-PSHAVEEQARELRYRFFARLAGQYRTKTIVVA 115 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV ++ R + + + + + RPFL ++ + ++ Q + Sbjct: 116 HHANDQAETVLLKLIRGGRLEQLAGMSVKKRL-------VLRPFLGITKQQLITYAQQHH 168 Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 +SW ED +N D + R +R V + + F + + ++ +Y Sbjct: 169 LSWREDDTNFDATYTPRNLLRNIVIPELKTINPQVVNHVNSFAKQIAEQSELISFQAKQY 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 L + + I L + ++A + ++ + ++++ L + K+ Sbjct: 229 LPLLTKDWTKIPDLWLE---------VTLAAYLHEQKVYRFKQQQLKQIHQLLINEKKPT 279 Query: 302 VSI---GRVVIDRRANFLWITR------AVRNLPTLILYPEE 334 SI VV+ + +++ + V++LPTL+L + Sbjct: 280 GSIQLSHTVVLIKNYRQVYLKKTTEIPNTVQDLPTLMLKLNQ 321 >gi|332969142|gb|EGK08174.1| tRNA(Ile)-lysidine synthase [Kingella kingae ATCC 23330] Length = 425 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 78/345 (22%), Positives = 133/345 (38%), Gaps = 30/345 (8%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 SV F L + H+ VA+SGG DS+ LL S SA+ + H L Sbjct: 6 SVDLFAAQLPDLRGKHVCVALSGGVDSVVLLHLFAQAQSSLQLT--SLSALHIHHGLNAQ 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A + +D S L I + S + G+ AAAR+ARY + + NA I A Sbjct: 64 ADQWQAFCADYASSLHIPFTAQSVRIQTNGLGIEAAARQARYQIFA----QQNADFIALA 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLL 182 H +DQ+ET ++ + R + + + + + L + RP L RE I + Sbjct: 120 HHQNDQIETFWLAALRGGSLRALSAMPKMRDLPRENRAGCLTLLRPLLPFTREQIVQYAQ 179 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----I 238 Q + + D SN + F R VR + + + + A+L Sbjct: 180 QNQLDFVYDNSNDNPNFLRNWVRLHLLPSIVQKQPAHAQHLLHSIATLQEERALLDEIIA 239 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + + ++ SQ + S + + A ++ P S+ + L+ + Sbjct: 240 EDWQRIQHNAL--FSQRLWQTLSPARQHQMLHQFA-QRNELGAPSKSSLHQFAQQLRHAQ 296 Query: 299 RGCVSI--GRVVIDRR----------ANFLWITRAVRNLPTLILY 331 G ++ GR V+ R A++ W+ R NLP + + Sbjct: 297 SGEWTLPRGRAVLYRDYLFAIPHDLGASWTWLHRTQTNLPNELRW 341 >gi|329848733|ref|ZP_08263761.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19] gi|328843796|gb|EGF93365.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19] Length = 410 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 159/392 (40%), Gaps = 21/392 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + + F L I VAVSGG DS+ LL L +G+ VDH Sbjct: 1 MIANRPTVISDFSTLLNGDGPIGVAVSGGGDSVALLYQLAD------WGRRPLHVFHVDH 54 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L+ + V+ L+++ + ++W KP TG+ AAAR AR+AL++E A+ Sbjct: 55 ALQADSGLWADAVAAHAKHLKLSFTRLTWSGDKPTTGISAAARGARHALLAEAARAAGIK 114 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AHT DD E YMR Q + +++ RP L RR D+R + Sbjct: 115 VVCLAHTCDDVAEAAYMR-QHGSNVGTPQTWSPSPVWPHGRGVFLCRPLLSARRADLRQY 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L+ R +SW +DP+N + + RV+ R+ + L L V L+ Sbjct: 174 LMDRKLSWIDDPANENAKSLRVQARQAL-------LGLTSAPLPPPVRLPRGEVETLLHD 226 Query: 241 YLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 ++ D + + +LL +A GG LP +E + L G+ Sbjct: 227 PEGWSALGLLRFKADAFYQLPNDTALHLLATAAVCAGGGDRLPRRHKVETLYESLADGRS 286 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359 ++ I + F+ + R ++ P + +WDGR+Q ++ G Sbjct: 287 H--TLAGARIRQAGGFIHVLREAGDI-GRNAEPGQGDLWDGRFQLL---GRVVATGRDRG 340 Query: 360 RKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 R D + +S+P+ E P LA Sbjct: 341 RLDDRDRAFLRTLPPDLRASLPAMEVSGPHLA 372 >gi|208779899|ref|ZP_03247243.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella novicida FTG] gi|208744354|gb|EDZ90654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella novicida FTG] Length = 398 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNIGQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269 >gi|193216339|ref|YP_001997538.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC 35110] gi|193089816|gb|ACF15091.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC 35110] Length = 323 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 131/344 (38%), Gaps = 44/344 (12%) Query: 10 RFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67 R V+SL+ +L+A SGG+DSM LL L V F ++ +A + LR E + Sbjct: 11 RLRVKSLIKKNEKVLLAFSGGADSMALLSLLKKVQP---FLNLQLAAAHCNFGLRGEESD 67 Query: 68 DEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + C L I + + + + + AAR RY + A+ + I Sbjct: 68 ADETFCQMQCDALEIPIFTIHFDTKHFAQQHKMSIEEAARHLRYNFFYKLAEIERCSKIA 127 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH +D ET+ R + G+ + + + RP L +R ++ +L Sbjct: 128 TAHHANDNAETILFNLFRGSSLLGL-------KGIRVKHEKLVRPLLGFKRAELIEYLES 180 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + + + D +N D ++R +R V + K K +L N + +L Sbjct: 181 QQLPYRLDLTNLSDAYDRNFIRLKVIPLIEERF--KHKLLPNLLRLSENGTE--LDVFLN 236 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLFLKSGKRG 300 H + SQ+ LN Q+ +P + E+ +F ++ Sbjct: 237 AHFEKL--TSQNGLNPFE---------------QQLHVPSLQMLSKFEQKEIFKRALACF 279 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344 + + R + L + +IL + +W G++ + Sbjct: 280 SIDPNANRLSRLCDLL----ETQAGRKVILSKDLEVIWKGKWLY 319 >gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC 35910] gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC 35910] Length = 449 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 18/278 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ I ++ V L+AVSGG DSM L + K +F +++ L Sbjct: 5 LTFINQLKNLVHE-PEKHTFLLAVSGGVDSMVLASLFRDFGQEIQDSKFRFQVAHINYKL 63 Query: 63 RET-AKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 R + + + V D C + I + VS K+ KP+ + ARE RY + Sbjct: 64 RGNDSDLDQKTVQDFCEKNHIKFHLYEVSEKDQKPENSIQLWARELRYRFFKTIQEKEKL 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH +DQLET + K G++G+ +D N I RP L +++I Sbjct: 124 EFLVTAHHLNDQLETFIINLS-----KAAGINGLSGIPSHDNN--ILRPLLNFSKKEIYQ 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235 F +I + ED SN + + R ++R + + + + F+ +N Sbjct: 177 FAELNHIEFREDLSNKKNDYLRNKIRNQIVPMLMETNDHFLDNFRKSSSLLNQTKDFVQK 236 Query: 236 --MLIPKYLTVHMRSIIAISQDILNIDSTL-LFYLLRV 270 I LTV + +S++ LN +S F +L+ Sbjct: 237 QIQEIENNLTVFNQDYKILSKEKLNQESDFVKFEILKK 274 >gi|94987642|ref|YP_595743.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429] gi|94991508|ref|YP_599607.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS2096] gi|94541150|gb|ABF31199.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429] gi|94545016|gb|ABF35063.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes MGAS2096] Length = 428 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 113/283 (39%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ +LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQHFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|293375859|ref|ZP_06622125.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909] gi|325841824|ref|ZP_08167484.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1] gi|292645504|gb|EFF63548.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909] gi|325489854|gb|EGC92206.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1] Length = 459 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 12/264 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++VAVSGG+DSM LL L + + + V+H RE + + V+ Sbjct: 15 LEKNKSVVVAVSGGADSMALLNLLVEI---KELYNLHLVVAHVNHKKRENSDLDEVLVNK 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + + V AR RY A A I+TAH DD LET Sbjct: 72 IALENGLDYEVYYLPKCLTNENFHEYARRERYNFFKRVAANYKADCIVTAHHADDHLETQ 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R GL G+ + Y L I RP + ++DI + + I + ED SN Sbjct: 132 IYRLLYHSTV--SGLIGIEPIVEY-CGLKIIRPLIEVTKDDIYKYCSESRIEYREDESNQ 188 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----HMRSII 250 D + R R+R+++ + + + + +++ A + + ++ + Sbjct: 189 SDVYTRNRIRKYIIPALAEETFSVYEHSRSISEQLSEDEAFFNLQVDQLMNEVSEIKGVF 248 Query: 251 AISQDILN-IDSTLLFYLLRVSAA 273 +S+ +N + +L L++ Sbjct: 249 KVSRSFINSLPKSLSRRLIKRILQ 272 >gi|315224848|ref|ZP_07866669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga ochracea F0287] gi|314945251|gb|EFS97279.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga ochracea F0287] Length = 428 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 67/357 (18%), Positives = 133/357 (37%), Gaps = 42/357 (11%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIA 83 A+SGG DS+ L L++ I+ + LR + D+ +V + L + Sbjct: 16 AISGGIDSVVLAHLLYT-------HGIELLLAHCNFQLRGTESDDDEAFVRTFAAELGVP 68 Query: 84 HSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V + + Q AARE RY E A T I TAH +D LET ++ Sbjct: 69 LQVKRFDTHQYASFHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLETFFINL 128 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + I RP L+ R+ I + + + W ED SN +++ Sbjct: 129 SRGSGLEGL-------LGIPEEKDTIIRPLLQFSRQQIYEYAQAKRLKWREDSSNETNKY 181 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQ 254 R +R + ++ F + ++ + + + I I Sbjct: 182 VRNVIRHDIIPKLALVHPNYLENFNQTQEYLHQSARFIDFYIEKLKETCFEGHNPIQIDI 241 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + L L F L ++ G + + ++ ++L ++GK+ ++ + Sbjct: 242 EKLQAVPELDFVLHKLFYPYGFGNV-----KDLKNLLLNAEAGKQVLSPTH--ILIKDNT 294 Query: 315 FLWIT-RAVRNLPTLILYPEETTVWD----------GRYQFQNLSDSLIQIGPQSYR 360 LW+ + +L++ + V+D G+ + +N + I + + Sbjct: 295 CLWLKPNEAKRSLSLLISEDMAEVYDPVHLRFEFIEGKVKVKNPIPTEIYVDADKLQ 351 >gi|330975382|gb|EGH75448.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 445 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 111/308 (36%), Gaps = 18/308 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + A S + + Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261 Query: 264 LFYLLRVSAAICGGQI--------SLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + +SAA + LP + + + R Sbjct: 262 LGPIAALSAARQRNALRHWLSPLTRLPDTDHWAGWEALRDAAHDAGPLWRLADGTLHRAQ 321 Query: 314 NFLWITRA 321 N +W A Sbjct: 322 NCIWWVPA 329 >gi|114562464|ref|YP_749977.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400] gi|114333757|gb|ABI71139.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400] Length = 488 Score = 206 bits (525), Expect = 5e-51, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 118/317 (37%), Gaps = 29/317 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++A SGG DS L L ++ I I V H L A V++ + Sbjct: 40 KLVLAYSGGVDSEVLACGLSALA--HKHPHIACLLIHVHHGLSANADIWVQHCITRANHY 97 Query: 81 RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + K K P+ L A AR+ARY + +++TAH DDQLET+ + Sbjct: 98 QLPVQIERVKVEKGPRQSLEAQARDARYQAFDRYL--NPGDILLTAHHQDDQLETLLLAL 155 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R KG+ G W+ RP L R+ I F Q+ +S ED SN DD F Sbjct: 156 KRGQGPKGLAAMGAIQAY---KQAWLVRPLLDISRDQIEQFAAQKQLSHIEDESNQDDSF 212 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD---- 255 +R +R + L + + + +I ++ + + + D Sbjct: 213 DRNFLRLDIIPR-LKQRWPSIATTAGRSAALCAEQQQVIDDEVSHRLPEWLIVPGDTNAL 271 Query: 256 -----------ILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGC 301 + + L R CG ++LP + + +L K Sbjct: 272 MTESTGFKLTGFGQLSAAWQALLFRGYLIYCG--VNLPSQAQLQQILSQLLAAKDDANIS 329 Query: 302 VSIGRVVIDRRANFLWI 318 + G + R A ++ Sbjct: 330 IQWGDYQVKRFAGIAYV 346 >gi|53712709|ref|YP_098701.1| putative cell-cycle protein [Bacteroides fragilis YCH46] gi|61216469|sp|Q64WF9|TILS_BACFR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52215574|dbj|BAD48167.1| putative cell-cycle protein [Bacteroides fragilis YCH46] Length = 435 Score = 206 bits (525), Expect = 6e-51, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F + +LV +SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C L I H + +K + AARE RY K A+ Sbjct: 59 ESDRDEAFVRRLCHESGVLLHIEHFDTTQYATKKHISIEMAARELRYEWFETLRKQREAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DD +ETV + R G+ + N I RP L RE+I ++ Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + + D +N D + R ++R + + ++ D N + Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF +L Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264 >gi|70728575|ref|YP_258324.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5] gi|68342874|gb|AAY90480.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5] Length = 438 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 8/257 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L + SA+ + H L+ A + C L + Sbjct: 23 VAFSGGLDSTVLLHLLAGLAQHHRLPP--LSAVHIHHGLQAAADAWPEHCQAFCDALGVP 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + L AAREARY + T + +++TA DDQ ET+ R R Sbjct: 81 LQVLRVQVPA-GASLERAAREARYGAFARL--TASGEVLLTAQHRDDQAETLLFRLLRGA 137 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + + RP L R +++ + + +SW EDPSN D ++ R Sbjct: 138 GVRGLSAMPSERPL---GDGQLLRPLLDVSRAELQCYAAEHQLSWVEDPSNADHQYSRNY 194 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V +N A +L + + A L++ S Sbjct: 195 LRHQVMPAITARWPQAALSMSRSAAHLNEAQGLLDELAIMDLDAARGASVWPWLDLPSLA 254 Query: 264 LFYLLRVSAAICGGQIS 280 L L +S A +S Sbjct: 255 LAPLQSLSGARQRNALS 271 >gi|260437759|ref|ZP_05791575.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876] gi|292809781|gb|EFF68986.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876] Length = 457 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 94/252 (37%), Gaps = 22/252 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L ++V +SGG+DS+ L L + RS A+ V H +R E A ++ + Sbjct: 15 LDGCGSVIVGLSGGADSVALFHVLREL---RSRYGFSIIAVHVHHGIRGEEADRDLDFCR 71 Query: 75 DVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++C R + + + A R+ RY A + I AH +D Sbjct: 72 NLCRRYGVELREFFYDIPKLAKELSLSPEEAGRKVRYDSFRSVASEYENSRIAVAHHGND 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + ETV R KG+ + + I RP L + DI +L + + +C Sbjct: 132 RAETVIFNMTRGTGMKGL-------RGIVPMRDNIIRPLLCVTKADILGYLDEIHQDYCL 184 Query: 191 DPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D +N + + R R+R + + + K +L V N + + K Sbjct: 185 DSTNESNDYSRNRIRNVILPELAKINSNAVSNICSMADKMMELNDFVENYIDDMYDKCAV 244 Query: 244 VHMRSIIAISQD 255 R I+ D Sbjct: 245 EDERGILLKRPD 256 >gi|222152214|ref|YP_002561389.1| PP-loop family protein [Streptococcus uberis 0140J] gi|222113025|emb|CAR40337.1| PP-loop family protein [Streptococcus uberis 0140J] Length = 427 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 124/326 (38%), Gaps = 32/326 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ FF +L+AVSGG DSM LL LH +I + V+H R+ Sbjct: 11 VKAKHFF----NNHTKVLIAVSGGVDSMNLLHFLHIYQEK---FEILIGIVHVNHKQRQE 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E Y+ + + I S+K A AR RY + + T ++TA Sbjct: 64 SEIEESYLIEWAKKHNIPIYTSSFKGKFT----EAKARTFRYDFFKKIMQEEGYTALVTA 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ET+ MR R K LSG+ + + + RPFL ++ N Sbjct: 120 HHADDQAETILMRIFRGSRLKY--LSGIKEIQSFGTG-ELIRPFLGIQKSQFP------N 170 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I ED SN ++ + R R+R + + + F+ + + LI + Sbjct: 171 IFHFEDQSNFENYYFRNRIRNH----YMKEIEQENPNFKTSLLSLAKETEYLIDALDDLT 226 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 L + FYLL+ + + + V+ L + K G + Sbjct: 227 KEIDFQQRYQFLEQTNATQFYLLQKYINTF--PDLMLTRQQFDNVLHLLTTKKEGVFPL- 283 Query: 306 RVVIDRRANFLWITRAVRNLPTLILY 331 + FL +TR + + L Sbjct: 284 -----KNGYFLKLTRDFSVIEKIGLE 304 >gi|258614287|ref|ZP_05712057.1| hypothetical protein EfaeD_01112 [Enterococcus faecium DO] Length = 343 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 31 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 88 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 204 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FRFSAEMI 270 >gi|60680868|ref|YP_211012.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC 9343] gi|60492302|emb|CAH07067.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC 9343] Length = 435 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F + +LV +SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C L I H + +K + AARE RY + A+ Sbjct: 59 ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DD +ETV + R G+ + N I RP L RE+I ++ Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + + D +N D + R ++R + + ++ D N + Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF +L Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264 >gi|69245448|ref|ZP_00603443.1| PP-loop [Enterococcus faecium DO] gi|257879859|ref|ZP_05659512.1| PP-loop family protein [Enterococcus faecium 1,230,933] gi|257891700|ref|ZP_05671353.1| PP-loop family protein [Enterococcus faecium 1,231,410] gi|260559532|ref|ZP_05831713.1| pp-loop family protein [Enterococcus faecium C68] gi|314938210|ref|ZP_07845510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04] gi|314943105|ref|ZP_07849904.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C] gi|314949302|ref|ZP_07852645.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082] gi|314952235|ref|ZP_07855250.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A] gi|314992093|ref|ZP_07857543.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B] gi|314996276|ref|ZP_07861332.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01] gi|68195830|gb|EAN10266.1| PP-loop [Enterococcus faecium DO] gi|257814087|gb|EEV42845.1| PP-loop family protein [Enterococcus faecium 1,230,933] gi|257828060|gb|EEV54686.1| PP-loop family protein [Enterococcus faecium 1,231,410] gi|260074631|gb|EEW62952.1| pp-loop family protein [Enterococcus faecium C68] gi|313589520|gb|EFR68365.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01] gi|313593307|gb|EFR72152.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B] gi|313595630|gb|EFR74475.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A] gi|313598164|gb|EFR77009.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C] gi|313642406|gb|EFS06986.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04] gi|313644308|gb|EFS08888.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082] Length = 481 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 28 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 85 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 201 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259 Query: 257 LNIDSTLL 264 + ++ Sbjct: 260 FRFSAEMI 267 >gi|258513582|ref|YP_003189804.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257777287|gb|ACV61181.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 473 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 132/323 (40%), Gaps = 28/323 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + IL+AVSGG DS+ +L L + R I ++H R E + + + Sbjct: 16 RMVNKGDKILLAVSGGPDSVAMLDVLFCL---RHDLGISLHIAHLNHMFRGEESLGDAEF 72 Query: 73 VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V ++ R + +V K AAR RY+ + E A +A+ I AH Sbjct: 73 VRELAVRYNLPVTVRHINVPSFMEKTGLSSQPAARTVRYSFLDETAAQESASRIALAHHA 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R G +G+ + N +I RP L +R+DI + ++N+ W Sbjct: 133 DDQAETVMLHFLRGS-----GAAGLRGMLPVRDNFYI-RPMLCLKRQDIEDYCKKKNLRW 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAM----LIPK 240 D SN + R ++R ++ + + L + + D+ + + + + Sbjct: 187 RVDSSNLKTDYRRNKIRMYLLPLLEKEYNNNLTATLNRLADIFREEEDYLELMTRNEYNN 246 Query: 241 YLTVHMRSIIAIS-QDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSM-ERVMLFLKSG 297 + I ++ + + L +LR+ I GG L + + + V+L Sbjct: 247 LTVLKSAGEICLNLKGFQQVPLALQRRILRLAWREITGGFRDL-AFEQLGKAVILLTNHV 305 Query: 298 KRGCVSIGR--VVIDRRANFLWI 318 G + R V+ R +F +I Sbjct: 306 GSGSLEFPRDVKVVKRYDSFSFI 328 >gi|253563316|ref|ZP_04840773.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5] gi|251947092|gb|EES87374.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5] Length = 435 Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F + +LV +SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C L I H + +K + AARE RY + A+ Sbjct: 59 ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DD +ETV + R G+ + N I RP L RE+I ++ Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + + D +N D + R ++R + + ++ D N + Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF +L Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264 >gi|265762798|ref|ZP_06091366.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16] gi|263255406|gb|EEZ26752.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16] Length = 435 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F + +LV +SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C L I H + +K + AARE RY + A+ Sbjct: 59 ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DD +ETV + R G+ + N I RP L RE+I ++ Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + + D +N D + R ++R + + ++ D N + Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF +L Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264 >gi|257882585|ref|ZP_05662238.1| PP-loop family protein [Enterococcus faecium 1,231,502] gi|293563198|ref|ZP_06677654.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162] gi|293570120|ref|ZP_06681200.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071] gi|294618633|ref|ZP_06698172.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679] gi|294623709|ref|ZP_06702542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317] gi|257818243|gb|EEV45571.1| PP-loop family protein [Enterococcus faecium 1,231,502] gi|291587492|gb|EFF19376.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071] gi|291595152|gb|EFF26490.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679] gi|291596924|gb|EFF28142.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317] gi|291604848|gb|EFF34326.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162] Length = 484 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 31 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 88 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 204 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FRFSAEMI 270 >gi|118497835|ref|YP_898885.1| ATPase [Francisella tularensis subsp. novicida U112] gi|194323808|ref|ZP_03057584.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. novicida FTE] gi|166988059|sp|A0Q7B6|TILS_FRATN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|118423741|gb|ABK90131.1| predicted ATPase of the PP-loop superfamily [Francisella novicida U112] gi|194322172|gb|EDX19654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. novicida FTE] Length = 398 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQPYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNIGQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269 >gi|224539103|ref|ZP_03679642.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus DSM 14838] gi|224519267|gb|EEF88372.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus DSM 14838] Length = 436 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 28/280 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + I + ILV +SGG+DS+ LL L ++ A + Sbjct: 1 MNIKKIAQYIDQEKLFTREDKILVTLSGGADSVALLRLLLAM-------GYTCEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR + + + +V ++C +L + V ++ K + AARE RYA + Sbjct: 54 HLRGDESVRDEMFVRELCLQLEVPLHVQHFQTTEEAEKRHISIEMAARELRYAWFEQLRL 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A +I AH DD +ET+ + R G+ + N I RP L R+ Sbjct: 114 QQGANVIAVAHHKDDSVETLLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLDRK 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I +L + S+ D +N D + R ++R + + + +N+A Sbjct: 167 EITEYLQEIGQSYVTDSTNLQDEYTRNKIRLNLLPLMQEINPSVKENLLRTAEHLNDAA- 225 Query: 236 MLIPKYLTVHMRSIIAISQDIL-------NIDSTLLFYLL 268 L+ K + + Q IL + TLLF +L Sbjct: 226 -LLYKKGIEEGKQKVQTEQGILISVLLQESAPETLLFEIL 264 >gi|50913357|ref|YP_059329.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394] gi|61217204|sp|Q5XEL7|TILS_STRP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50902431|gb|AAT86146.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394] Length = 428 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 27/283 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL----PGYRSMERVMLFLKSG 297 ++ ++LL+ G L + + +++ K G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQIAKQG 279 >gi|19745210|ref|NP_606346.1| cell-cycle protein [Streptococcus pyogenes MGAS8232] gi|61217382|sp|Q8P322|TILS_STRP8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|19747299|gb|AAL96845.1| putative cell-cycle protein [Streptococcus pyogenes MGAS8232] Length = 428 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 27/283 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ KI+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLRY--LSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL----PGYRSMERVMLFLKSG 297 ++ ++LL+ G L + + +++ K G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQIAKQG 279 >gi|313675080|ref|YP_004053076.1| tRNA(ile)-lysidine synthetase [Marivirga tractuosa DSM 4126] gi|312941778|gb|ADR20968.1| tRNA(Ile)-lysidine synthetase [Marivirga tractuosa DSM 4126] Length = 438 Score = 205 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 20/264 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I+ F R H+L+A+SGG DS+ L L FS ++ Sbjct: 6 FLDYIKKESLFNRH----EHLLLAISGGLDSVVLAHLLK-------LTDFHFSMAHMNFQ 54 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR E + + ++V ++ +L + V + K + AR+ RY K + + Sbjct: 55 LRDEDSNRDEKFVRELAKKLEVEVFVKRVEIDKEKGSTQLQARDLRYDWFRRLMKDHHFS 114 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH +D LET + R KG+ + L+ I+RP L +E I+ + Sbjct: 115 KLLTAHHANDLLETTLLNLIRGTGIKGL-------RSILPLHHNIARPLLFASKEQIKEY 167 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + +I W ED SN ++++R ++R V + L + Q +++ A + + Sbjct: 168 AEENSIEWREDVSNASEKYKRNKMRHRVIPLLLKENPNLLSGIQQTTLRL-RAAESVWDE 226 Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264 L + + + + ID +L Sbjct: 227 KLAKIRKKYVFNRDEGIRIDRRIL 250 >gi|238922945|ref|YP_002936458.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656] gi|238874617|gb|ACR74324.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656] Length = 514 Score = 205 bits (523), Expect = 9e-51, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 113/307 (36%), Gaps = 44/307 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71 + + + +LVA+SGG+DS+ LL+ L+ + A+ V+H +R ++++ R Sbjct: 13 KMINNHSTVLVALSGGADSVCLLLVLNEIKRQCADELDFALEAVHVEHGIRGAESREDAR 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALIS--------EHAKTINA 119 + SD+C RL I V S + GL AAR RY A A Sbjct: 73 FASDICERLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEKEVARILRYEAFEEGA 132 Query: 120 --------------------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 ++ AH +D ETV + R KG LSGM + Sbjct: 133 GRYPCEPANASDQKQGNSRQVVVAVAHHMEDNAETVLFQMLRGSGAKG--LSGMH-PVSV 189 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + RP L R I +L + ++ D +NTD + R ++R V + L Sbjct: 190 KNGVTYIRPLLSATRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRA 249 Query: 220 MKKFQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 ++ + ++ + ++ +I + L + R Sbjct: 250 IEHINESAGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFECLHPALKSGVARECI 309 Query: 273 AICGGQI 279 + G++ Sbjct: 310 HLASGRL 316 >gi|330950662|gb|EGH50922.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae Cit 7] Length = 394 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 107/310 (34%), Gaps = 20/310 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELAGRETLPALN--AIHVHHGLQTAADAWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY +E + +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPAASLEQAARQARYGAFTERLRE--GEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRMQLEDYARRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + A S + + Sbjct: 202 LRNQVLPLLTSRWPQAAASLARTAHHLGEAQQLLDELALQDIANAQAATSFGWVGLPVLS 261 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L + +SAA + + R+ + + + R Sbjct: 262 LGPIAALSAARQRNAVR-HWLAPLTRLPDTDHWAGWEALRDAAQDAGPLWRLADGTLHRA 320 Query: 313 ANFLWITRAV 322 +W A Sbjct: 321 QGCIWWVPAA 330 >gi|119774292|ref|YP_927032.1| cell cycle protein MesJ [Shewanella amazonensis SB2B] gi|119766792|gb|ABL99362.1| cell cycle protein MesJ [Shewanella amazonensis SB2B] Length = 497 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 121/322 (37%), Gaps = 23/322 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + P+ +++ SGG DS + AL + + + V H L A R+ Sbjct: 25 LTPSKLVLGYSGGLDSELMACALSHYA--KKHPGTQCLLVHVHHGLSPNADTWARHCEHR 82 Query: 77 CSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +R + + + + + L A AR ARYA + H +++TAH DDQLETV Sbjct: 83 AARYELEFVLEKVRVKQGARLSLEAEARSARYAALMAHLAE--GDVLLTAHHQDDQLETV 140 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R KG+ G ++ D + RPFL RE + ++S ED SN Sbjct: 141 LLALARGLGPKGLAAMGQQQSL--DDGAFQVRPFLGLSREYLEDAASALDLSHIEDESNQ 198 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D RF+R +R + L + + + ++ ML+ ++ + +I+ Sbjct: 199 DTRFDRNFLRAEIIPR-LKSRWGAIGATASRSAELCAQTQMLLDDEVSERLTPLISRCPL 257 Query: 256 ILNI----------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302 L+R + G + P ++ + K+ + Sbjct: 258 SHAFRLALGPVAASSRAWQAQLVRGFLEVAG--LPPPSKIQLDEALSQLFAAKADAAVSL 315 Query: 303 SIGRVVIDRRANFLWITRAVRN 324 GR + R +L+ N Sbjct: 316 RFGRTRLRRYQGWLYAETESDN 337 >gi|330721718|gb|EGG99715.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC2047] Length = 401 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 15/277 (5%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 A+ V H L + A D + VC +L + +V + PQ L RE RY + Sbjct: 11 LEALHVHHGLSDYADDWAAHCQYVCDQLSVPLTVRHVRAEMPQASLENQLRELRYQVFIN 70 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 L+ AH DDQ+ET+ +R R +G L+GM + + RP L Sbjct: 71 VL--NGGDLLALAHHADDQVETMMLRMLRGTGPQG--LAGMPSQRCLGQGM-LIRPLLEH 125 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVN 231 R ++ S+ +SW ED SN D RF+R +R V + Y + F++ +V + Sbjct: 126 CRSELESYAQHHGLSWIEDDSNADTRFDRNYLRHEVMPKLARRWPYYRKNFFRNAQVNKD 185 Query: 232 N--AVAMLIPKYLTVHMRSIIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + + L M++ A + +L + L LLR I + LPGY+ + Sbjct: 186 ALSSLDYFLERELQPQMQANEAGLDCEWLLGFPAALQINLLRGWLNI--RSLPLPGYKHL 243 Query: 288 ERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++V+ + ++ + VS V I R ++ + Sbjct: 244 QQVLTEVVAVRVDAQSLVSWPGVEIRRFQGVVYANKP 280 >gi|209558597|ref|YP_002285069.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131] gi|209539798|gb|ACI60374.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131] Length = 428 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ + I+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKLT---IRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|56808856|ref|ZP_00366567.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus pyogenes M49 591] Length = 428 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H+L+AVSGG DSM LL L+ + I+ V+H R + E Y+ Sbjct: 20 HRHVLIAVSGGVDSMNLLHFLYLFQDKLT---IRIGIAHVNHKQRSESDSEEAYLKCWAK 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I V +++ AAR+ RYA N + ++TAH DDQ ET+ MR Sbjct: 77 KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ I ED SN + Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 F R RVR L L + +F ++ ++L + + + Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239 Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 ++ ++LL+ G L +++ +++ K+G Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279 >gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii] gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii] Length = 461 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 25/318 (7%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA 83 AVSGG DS+ LL LH + + + + ++ LR + + +V+ +C RL + Sbjct: 2 AVSGGPDSVALLSILHQLAPAWNLL---LTVVHCNYGLRGAESDGDASFVAALCRRLELP 58 Query: 84 HSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + TG L A AREARY L + + A + HT DDQ ETV +R Sbjct: 59 CHIRRLTVDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADDQAETVLLRM 118 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ L+ RP L R++I ++L +S+ D SN + Sbjct: 119 LRGTGLRGLAGMPHIRESLF------VRPLLSRSRQEILAYLQAVGLSYRTDSSNAKSIY 172 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--------IPKYLTVHMRSIIA 251 R RVR + + + +L + + + L + + + + I Sbjct: 173 LRNRVRHELLPV-MQSLAPAAARILARQADLLRDDDRLLDALAAHRLERTIRSRDSATIV 231 Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + + +L L +LR + +P + ++ L S G + G ++ Sbjct: 232 LDRTVLLKQPPALQRRILRQAIQAVAPSTGVPRSDVLLSMLASLASHSGGIWNAGAAMVA 291 Query: 311 RRANFLWITRAVRNLPTL 328 + + +T AV LP + Sbjct: 292 CEQDQVRLT-AVSPLPPI 308 >gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662] gi|167653318|gb|EDR97447.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662] Length = 437 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 111/287 (38%), Gaps = 24/287 (8%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ + I V VSGG+DS+ L + + ++ A+ ++H + Sbjct: 1 MDKVRKFMEKHHMIGQGDFIAVGVSGGADSV---CLLLLLCELKQEYDLELCAVHINHGI 57 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R A + +V ++C R ++ V K L A R RY + Sbjct: 58 RREAFKDQEFVENLCRRRKVPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHG 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ R R +G L GM + RP L ++E+I Sbjct: 118 GGKIAVAHHQNDQAETMLYRMSRGTGIQG--LKGMEAVRA-----DVIRPLLCLKKEEIL 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231 ++L +++ W ED SN D+ F R ++R V + + ++ ++ + Sbjct: 171 AYLKEKDQDWMEDASNEDNTFARNKIRNQVIPALTKVNARAVEHIVSLSEEIEEWSRYLE 230 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 ++ + + + + L + L + + G+ Sbjct: 231 EQLSEAWKACVKQEGKGRLIDTGRFLEEPEPIRRLLAKQAIEQAAGR 277 >gi|325299729|ref|YP_004259646.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170] gi|324319282|gb|ADY37173.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170] Length = 430 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 120/342 (35%), Gaps = 28/342 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + I+VA+SGG+DS+ LL L G A + Sbjct: 1 MFYQKVIRYIHEKELFTKDDKIVVALSGGADSVALLRVLLQ-------GGYTCVAAHCNF 53 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR + + +V +C++L++ + + + + AARE RYA E K Sbjct: 54 HLRGKESDRDAAFVQTLCTKLQVPLHIHDFDTKSYAEAHRVSVEMAARELRYAWFEEVRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A +I AH DD +ET + R +G+ + N I RP L R Sbjct: 114 QERAQVIGVAHHRDDSVETFLLNLVRGTGIQGL-------KGIVPKNGAIVRPLLDVDRT 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNN 232 DI +FL + D +N D F R ++R V + ++ + + +V+ Sbjct: 167 DILAFLASIGQDYVMDSTNQRDEFTRNKLRLNVLPLLREINPSVSETIAETARRLFEVDA 226 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + I + I L +++ L + + ++ + Sbjct: 227 VYRVAITEACRRVKEGEDRIDIARLRMETAPQAVLFELLYPLGFNA------SQLQDIFR 280 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 L + + R + L I + P IL+ E Sbjct: 281 SLDAESGRLFYSSGYAVLRDRDSLIIRKREGESPAWILHQET 322 >gi|53804114|ref|YP_114243.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath] gi|61216455|sp|Q607F5|TILS_METCA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53757875|gb|AAU92166.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath] Length = 439 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 128/327 (39%), Gaps = 25/327 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL + V R I AI V H ++ A R+ + V R +A Sbjct: 20 VAFSGGLDSAVLLDLMCQV---RRVSGIGVRAIHVHHGIQPEADAWSRHCAAVADRYGVA 76 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ S+P AAAR ARY + A +++TA DDQ ET+ ++ R Sbjct: 77 LDILQIDGRSRPGDSPEAAARTARYHSLE--ASLDPGDILVTAQHLDDQAETLLLQLLRG 134 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ M + + + + + RP LR R DI ++ +R +SW EDPSN D+R++R Sbjct: 135 AGL--AGLAAMPNAVPFGAGI-LHRPLLRFGRRDILAYAQERGLSWIEDPSNRDERYDRN 191 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL----- 257 +RR + A +L T+ + A L Sbjct: 192 FIRRRILPQLAGRWPAVAANLTRSAGHCAEAAGLLDRLADTLMAAATAADEPGTLVLEIV 251 Query: 258 -NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRA 313 + LLR I + P + +ER+ ++ + ++ + R Sbjct: 252 QRLQPDEQRLLLRRW--IHKRGLRAPPAKLLERIRKEVVETAGDRTPMIAWAEGTVRRYR 309 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDG 340 + L + P+ T W G Sbjct: 310 HRLHLL-----PPSADFDASWTAAWSG 331 >gi|27904608|ref|NP_777734.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396403|sp|Q89AX3|TILS_BUCBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27904005|gb|AAO26839.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 438 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 71/327 (21%), Positives = 140/327 (42%), Gaps = 25/327 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +IL+A SGG DS + + ++ F AI ++H L ++ + +C Sbjct: 13 NILLAYSGGIDST--FLLYQLLKLKKNNLNFTFRAIHINHQLHPDSEKWSDHCKKICINH 70 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + + + AR+ RY I + K ++ T H +DQ ET+ + + Sbjct: 71 NIPIIIKKITINSNKNRIEEIARKKRYQAIYKIIKPK--EVLATGHNLNDQCETMLLALK 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ +Y + I RP L+ REDI++++ + I W ED SN D + + Sbjct: 129 RGSGITGLSSMSYKLNTIYK--IKIVRPLLKISREDIKTWIYKHKIHWIEDTSNNDTKHD 186 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R + + L + F+ +++ N ++ + + + + ++ IL Sbjct: 187 RNFLRLNI----IPKLKNRWPYFEKNCSRSIEILNIEKKILKQEIKKKLNKYLVLN-SIL 241 Query: 258 N------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308 N ID + +LR I Q ++P ++ ++ + ++F K + + I Sbjct: 242 NISNFRYIDKNICSIILRHWIKI--NQNTMPTFKIVKEIYNKVIFSKIDSQPKIIIKNYQ 299 Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335 I R N L+ T+ + + +IL T Sbjct: 300 IRRYNNHLYWTKKIPRIENIILIWNNT 326 >gi|294649384|ref|ZP_06726815.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194] gi|292824754|gb|EFF83526.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194] Length = 463 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 138/384 (35%), Gaps = 30/384 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L+ SGG DSM LL + + + AI +DH L++ + + Sbjct: 24 AQHFTEKTQFLIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGIL 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L I + L AR ARY +H +++ AH DQ Sbjct: 78 VQQQSEALNIPCIIQKVSVDA--GNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ +R G+ D + I RPFL RE I + Q + DP Sbjct: 134 ETLLLRLFSGAGVNGLAAMQQIDN---RKDFTIWRPFLDLSREQIEQWSNQLGFEYVIDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N+D ++R R + + L + KM+ + A ++ L + + Sbjct: 191 TNSDIHYDRAWCREELWGV-LEKRFPKMQSAVARTSYLMQDAAEILDDVLKADYQQCVVD 249 Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 Q + + + LL SA I G + P Y ++R+ ++F K + + I Sbjct: 250 HQLDLEQLAQLSTARQRQLL--SAWIKGDEQYRPSYEMVKRLQNEVIFSKPDAQASLHIH 307 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 R L+ L LY E+ + + IQ+ + Sbjct: 308 PYYYLRYQKRLY------RLTHDELYAEKVSTIPNISPLCFFAGQSIQVAAGKFEIISQT 361 Query: 366 SGIPPIIAQRALSSMPSKEGGKPL 389 G+ P + R L + ++GG+ + Sbjct: 362 VGLAPELLGRELKLL-KRQGGEKI 384 >gi|254373192|ref|ZP_04988681.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. novicida GA99-3549] gi|151570919|gb|EDN36573.1| tRNA(Ile)-lysidine synthase [Francisella novicida GA99-3549] Length = 398 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 R + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQLYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269 >gi|268608652|ref|ZP_06142379.1| cell cycle protein MesJ [Ruminococcus flavefaciens FD-1] Length = 457 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 25/266 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + L ++ +SGG+DS+GLL+AL+ + R I A+ V+HCLR E + + + Sbjct: 13 KLLSDGDTVVCGLSGGADSVGLLLALYEL---REKLGINVEALHVNHCLRGEESDRDEEF 69 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +CSRL I S + AAR+ RY + I TAH Sbjct: 70 CCHLCSRLGIPFSAFRVDVKSYAKEHSLSDEEAARKLRYGVFE---ANSQGKKIATAHNA 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D LETV + R A L GM + N I RP L RE+I +FL +R + Sbjct: 127 NDNLETVILNLARGSA-----LKGMAGIPVRRNN--IIRPLLTVSREEIEAFLSERGQEF 179 Query: 189 CEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 D +N D + R ++R + +++ + ++ +R + N + + Sbjct: 180 VTDSTNLSDDYTRNKIRHKIIPLMNELNSSVIATSVRSIAAMRSE-NELIEAETDEAEEK 238 Query: 245 HMR--SIIAISQDILNIDSTLLFYLL 268 R + +SQ I + LL Sbjct: 239 CRRDNAFTGLSQYHAVIRRRCIARLL 264 >gi|91775602|ref|YP_545358.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus flagellatus KT] gi|91709589|gb|ABE49517.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus flagellatus KT] Length = 425 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 26/325 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS LL L A+ V H L A + + C L I Sbjct: 2 LIAFSGGLDSRVLLQLLAQCSQQHGVL---LEAMHVHHGLSPNADRWAAFCAAECQGLGI 58 Query: 83 AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A ++ G+ A AR ARY + H +A ++ AH DDQ ET+ ++ R Sbjct: 59 AFHCQRICVDTSSGLGIEAGARLARYTALLSH----DADYVLLAHHQDDQAETLLLQLLR 114 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G G G+ ++D + + RP + R++I+++ + W +D SN D R++R Sbjct: 115 -----GAGAKGLAAMAIHDPSRRLLRPLIDVSRDEIQAYAKHAGLQWVDDESNLDTRYDR 169 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILN 258 +R V + L Y ++ A L+ + + ++ ++ D L Sbjct: 170 NFLRHMVFPV-LAQRYPAVRSTLARSAAHLAEAACLLDELAALDADGMVVDGKVNVDRLG 228 Query: 259 -IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGRVVIDRRANFL 316 + S LLR G + +PG ++ ++ L +G + + I + +L Sbjct: 229 MLSSQRARNLLRWWLDAHG--LPMPGLPRLQEMLQQLLHAGGQAAIKIRVCE----STYL 282 Query: 317 WITRAVRNLPTLILYPEETTV-WDG 340 R +L PE + W G Sbjct: 283 RRYRGWASLSAEPPVPEPAGLCWQG 307 >gi|300727992|ref|ZP_07061370.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14] gi|299774834|gb|EFI71448.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14] Length = 452 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 138/369 (37%), Gaps = 41/369 (11%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V++F+ L +VA+SGG+DS+ +L + A + LR Sbjct: 5 EKVKYFINEHHLLDKDKKYIVALSGGADSVC-------LLLLLKKLHYQIEAAHCNFRLR 57 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 + + + + ++C L+I + ++ + + + AAR+ RY+ K I Sbjct: 58 GDESYRDEEFCVNLCHALQIPLHRIHFETKEYAHLHKISIEMAARDLRYSYFENLRKDIQ 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH +D +ET+ + R +GM + N I RP L +R+DI Sbjct: 118 AEGICIAHHQEDCVETILINLIRGTGIQGM-------RGILPQNGHIIRPLLSIKRKDIE 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVN 231 +L + ++ D +N + +R ++R + + +Y + + +N Sbjct: 171 YYLQENRQNYVTDSTNLINDVQRNKIRLDIMPMLKQLNAGVVDNIYSTAQHLTEANCIIN 230 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL--FYLLRVSAAICGGQISLPGYRSMER 289 +A+ + ++ + I + + F +E+ Sbjct: 231 DAIKKYLTQHSIFSENEDFGLHSGYQKIRTESIENFSSPEYLLYYILSNYDF-SGSQIEQ 289 Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 + L KSGK + ++IDR L I R L I PE G Y F Sbjct: 290 IYKNLHGKSGKVWKSNSYELLIDREN--LIIKRRTEILDKTIKIPE-----PGTYVFDET 342 Query: 348 SDSLIQIGP 356 S +I P Sbjct: 343 SKVIINNIP 351 >gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168] gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168] Length = 468 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 146/337 (43%), Gaps = 26/337 (7%) Query: 3 LSPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + ++ R ++ L+ +LV VSGG DS+ LL L V + +K +D Sbjct: 1 MELLKKFREYINHHKLIKKGDGVLVGVSGGPDSLTLLDMLVRVKDE---YGLKLVVFHLD 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115 H R+ A E RYVS++ + + + + + AAR+ R+ L+ + Sbjct: 58 HKFRQEAAREARYVSNITNNYGLKCIIEEFDVPGLMNDEGLSPEEAARKVRFNLMIKWVN 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 ++N I AH DD +ETV++ R KG L+G+ D + + + P L R+ Sbjct: 118 SLNLNKIAVAHNKDDLVETVFLHMFRGTGLKG--LTGI-DPVSRIGGVEVIHPLLNIYRQ 174 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVN 231 +I + +RN++ DP+N + + R ++R + + +K + ++ + N Sbjct: 175 EIMDYCQRRNLNPVYDPTNQETIYTRNKIRHHIIPYIEDEINPGLKDVIYQMAEVVREEN 234 Query: 232 NAVAMLIPKYLTVHM----RSIIAISQDILNIDSTLLFYLL--RVSAAICG--GQISLPG 283 N + K L + + + +S + L ++ + V++ + G + Sbjct: 235 NFLDYQAEKNLKKVLVDKGQDYVILSLEKLFKLPLVIRRRITSLVNSKLKGEDNNLYRKH 294 Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 Y +E ++ +GKR + VV+++ + + + Sbjct: 295 YEMVENLIKSKVTGKRFDLP-DGVVVEKSYDKIIFRK 330 >gi|319399666|gb|EFV87920.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909] Length = 431 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 17/251 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQLET Sbjct: 67 QQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIISQLRADVLLTAHHLDDQLET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R + + +G++ Y + RP L ++ +I ++ I + ED S Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMS 182 Query: 194 NTDDRFERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 N D ++ R +R+ + + LK+K + D+ ++ A Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAYQLLKLKDWHDIELQSLKEQAETFISNEVSKSN 242 Query: 248 SIIAISQDILN 258 + S+ N Sbjct: 243 LTYSFSRTAFN 253 >gi|327438074|dbj|BAK14439.1| predicted ATPase of the PP-loop superfamily [Solibacillus silvestris StLB046] Length = 468 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 12/248 (4%) Query: 14 RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 + L+ +L+A SGG DSM LL + + I+ + VDH LR E + + + Sbjct: 15 QQLIKSGDKLLIACSGGVDSMALLSFFYHFQ---HYFNIELAVAHVDHMLRGEQSAQDRQ 71 Query: 72 YVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V C I ++ K + A R+ RY T T ++TAH Sbjct: 72 FVEQACEDWAIPFYSCAIPIAEIQKKEGGNMQAICRKERYHFFETVMHTHKFTKLVTAHH 131 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQLE++ M + + G L G+ + + + RPFL +++I +L + Sbjct: 132 ADDQLESMLMAMTKASSLNG--LKGILPSRKF-QQFTVIRPFLMVTKDEIGEYLHSKGHL 188 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + EDPSN + + R R R V + L + + ++ L+ + Sbjct: 189 YREDPSNAKNDYTRNRFRHNVVPVLKEENPLVSRHAVHIAQQLLEDDTYLMELAEERFSK 248 Query: 248 SIIAISQD 255 + + ++ Sbjct: 249 LFLKVDKN 256 >gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H] gi|61216387|sp|Q5FQB6|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H] Length = 398 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 148/380 (38%), Gaps = 28/380 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + A + +AVSGG+DSM L A VDH LR + E + Sbjct: 11 IDDAPVGLAVSGGADSMALAFLARRWRR-------NVVAFVVDHALRPESAAEAQLTVHR 63 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + +++ P+ + AR AR+ + + ++ AH DQ ETV+ Sbjct: 64 LAGMNVKARLLTL-APFPKGRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQDETVW 122 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR +GLSG+ + + + RP L +R L N+ W EDPSN + Sbjct: 123 MRHLHASGP--LGLSGI-QPVSVRGRIRLVRPLLTFPTARLRLTLQAENLPWIEDPSNAN 179 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 RFERVR+R+ + + + R+++ +A + ++ + + + + Q+ Sbjct: 180 RRFERVRLRQDLTPEQRQEARVLQQDALQERLRLEAELAEELGRHAVWYSQGWVFLGQE- 238 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID---RRA 313 +D L L+R + G P ++ +M +G ++ V + R Sbjct: 239 -GVDEEALSVLIR----LVSGSAYRPAREAVRTLM------TQGYGTLSGVQVRPAGRFG 287 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373 N + + R R L + + VWDGR++ + V + Sbjct: 288 NGIILVREERALGPFV-PAKAGAVWDGRWRLLACDVPQGSLIGSLGDAIHVMDLRRLGVP 346 Query: 374 QRALSSMPSKEG-GKPLLAP 392 A +P G+ +L P Sbjct: 347 YAAARCLPGVWHEGRLVLGP 366 >gi|257894175|ref|ZP_05673828.1| PP-loop family protein [Enterococcus faecium 1,231,408] gi|257830554|gb|EEV57161.1| PP-loop family protein [Enterococcus faecium 1,231,408] Length = 293 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 28 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 85 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 201 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259 Query: 257 LNIDSTLL 264 + ++ Sbjct: 260 FRFSAEMI 267 >gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 438 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%) Query: 10 RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F R +LVAVSGG DSM LL + + DH LR ++ Sbjct: 6 KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 59 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V +L++ W+ S Q AAAR+ARYA ++ A +A ++MTAH Sbjct: 60 EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 119 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ R R L G+ + + RP L + IRS+ Q N+ + Sbjct: 120 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 176 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SN D + R ++R V + Q ++ +A+ + R Sbjct: 177 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 236 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306 + + + S + R+ Q R + V+ L K +G Sbjct: 237 QVDDATVNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 296 Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335 + + + +TR P ++ Sbjct: 297 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 326 >gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA] gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA] Length = 309 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 109/287 (37%), Gaps = 24/287 (8%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR F+ + I V VSGG+DS+ L + + ++ A+ ++H + Sbjct: 1 MDKVRKFMEKHHMIGQGDFIAVGVSGGADSV---CLLLLLCELKQEYDLELCAVHINHGI 57 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 R A + +V ++C R ++ S K L A R RY + Sbjct: 58 RREAFKDQEFVENLCRRRKVPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHG 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I AH +DQ ET+ R R +G L GM + RP L ++E+I Sbjct: 118 GGKIAVAHHQNDQAETMLYRMSRGTGIQG--LKGMEAVRA-----DVIRPLLCLKKEEIL 170 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231 ++L ++ W ED SN D+ F R ++R V + + ++ ++ + Sbjct: 171 AYLKEKGQDWMEDASNEDNTFARNKIRNQVIPALTKVNARAVEHIVSLSEEIEEWSRYLE 230 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 ++ + + + + L + L + G+ Sbjct: 231 EQLSEAWKACVKQEGKGSLIDTGRFLEEPEPIRRLLAKQVIEQTAGR 277 >gi|326202845|ref|ZP_08192712.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782] gi|325986922|gb|EGD47751.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782] Length = 470 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 21/267 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V +SGG DS+ LL L+S+ ++ IK + V+H LR E A + +V C+ L Sbjct: 22 VIVGISGGYDSVCLLHVLYSISNELG---IKIYPVHVNHMLRGEEALRDENFVRSFCASL 78 Query: 81 R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + H VS K +T L A R ARY + S A+ A+ I AH+ +DQ ET+ Sbjct: 79 GLEVYVKHVDVSKKAKIEKTSLEEAGRNARYEVFSTVAEEQGASKIAVAHSRNDQAETIL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ N I RP L R I ++ + I D SN Sbjct: 139 MRICR-----GTGLEGLRGMEYKRDN--IIRPLLDVDRYQIEEYVNKIGIEAVTDSSNLH 191 Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAM--LIPKYLTVHMRSII 250 + R R+R V A + + + + V ++ + + V + Sbjct: 192 TDYFRNRIRLNVIPAINEASGSDITENLLRLSKIVVAEDDYLRYNSELYYQKAVLSEKRM 251 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGG 277 D+ + LRV G Sbjct: 252 YTELDLKVLTEVQQAVRLRVLRIAVGN 278 >gi|261206683|ref|ZP_05921381.1| PP-loop family protein [Enterococcus faecium TC 6] gi|260079176|gb|EEW66869.1| PP-loop family protein [Enterococcus faecium TC 6] Length = 481 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 28 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 85 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 201 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259 Query: 257 LNIDSTLL 264 + ++ Sbjct: 260 FRFSAEMI 267 >gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII 345-E] gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII 345-E] Length = 484 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 21/315 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+AVSGG DS+GLL+A++ + F ++DH LR+ + +EV YV+ +C Sbjct: 23 KKDKILLAVSGGPDSLGLLLAMNELKRSEGF---SIGCCTIDHHLRKESAEEVIYVNKIC 79 Query: 78 SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I V+ + Q AARE RY + E T I AH DDQ E Sbjct: 80 EELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV R R GLSGM Y RPFL +++I++++ + D + Sbjct: 140 TVIHRLIRGGGM--TGLSGMLPKREY-----FIRPFLAVTKKEIQAYIDEFPYIPAHDKT 192 Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N R ++R + ++ + QD + V K++ Sbjct: 193 NDIPDVTRNKIRLQLIPYLKKYNPNIVNTICRTAAIMQDEDEYIRTEVLNFAKKHIKKEH 252 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + +++ ++ L ++R + + Y S+ER + SGK G ++ Sbjct: 253 GFTVLNTEEFKSVMPALQRRIIRYIFSEYNNEHYTLDYISVERFRELIYSGKTGNITSSS 312 Query: 307 VVIDRRANFLWITRA 321 ++ + I Sbjct: 313 NMLLKIEKGYCIFTE 327 >gi|199598787|ref|ZP_03212199.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001] gi|199590292|gb|EDY98386.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001] Length = 435 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 132/324 (40%), Gaps = 30/324 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DSM LL + + DH LR ++ E +V Sbjct: 13 PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV Sbjct: 67 ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R L G+ + + RP L ++DIR++ + + +C+DPSN D Sbjct: 127 RLGRSGDP--AALVGIHPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250 R+ R ++R V ++ Q + + VA+ + R I Sbjct: 184 RYARNQLRHQVIPAFKQQNPELLRHVQRFTTEQSGLVALAQMQLTEWQQRLRINSVTIDW 243 Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVV 308 A + I LL LLR + +P ++ LK + +G V Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMP-------ILKSLKDTRERRFDLGAGVT 296 Query: 309 IDRRANFLWITRAVRNLPTLILYP 332 I +A + V+ +P L P Sbjct: 297 IAVQAAKI-----VKLVPKPKLAP 315 >gi|13899157|gb|AAG12421.1| MesJ [Chlorobaculum tepidum] Length = 351 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 49/340 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80 +L+AVSGG DSM LL SV S + + LR + + +V D C+ L Sbjct: 44 VLLAVSGGPDSMALLHLFASVAS---VLHCRLGVAHCNFMLRGDASDADESFVRDACAEL 100 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + + + + AR RY E + + T I T H DD ETV Sbjct: 101 GIDFHVRRFDTASVSSAWKKSIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVL 160 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ + + I RP L R +I ++L ++ + W +D +N Sbjct: 161 FNLFRGAGISGL-------RGIRVRHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEG 213 Query: 197 DRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 ++R +R V + H L +++ + ++ + + I + L H Sbjct: 214 IEYDRNFIRNRVIPVIEERFAHKLMPSLQRISEHAGELEEFIDLHISRLLEAHPG----- 268 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVI 309 + GG++ + R + ER + ++ K +S+G V+ Sbjct: 269 -------------------LDLAGGKLHVGTMRQLSMFERKEILKRALKLQGLSVGSNVL 309 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 +R A L +A R++P E + DG +F+ + Sbjct: 310 NRIA-GLLDNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 346 >gi|289565044|ref|ZP_06445498.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF] gi|294614895|ref|ZP_06694786.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636] gi|289163251|gb|EFD11097.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF] gi|291592181|gb|EFF23799.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636] Length = 484 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 31 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 88 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FRFSAEMI 270 >gi|291523831|emb|CBK89418.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium rectale DSM 17629] Length = 514 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 44/307 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71 + + + +LVA+SGG+DS+ LL+ L+ + A+ V+H +R ++++ R Sbjct: 13 KMINNHSTVLVALSGGADSVCLLLVLNEIKRQCADELDFALEAVHVEHGIRGAESREDAR 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEH-------------- 113 + SD+C RL I V S + GL AAR RY + Sbjct: 73 FASDLCERLNIPCHVHSVDVPQYAKSHGLGLEEAARILRYEAFEKEVARILRYEAFEEEA 132 Query: 114 ----AKTINAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 +T NA+ ++ AH +D ETV + R KG+ + Sbjct: 133 GRYPCETANASDQKQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAKGLAGMH---PVSV 189 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + RP L R I +L + ++ D +N D + R ++R V + L Sbjct: 190 KNGVTYIRPLLSATRAQIEEYLKENGQAFVTDATNADTAYSRNKLRHDVFPLLLQINDRA 249 Query: 220 MKKFQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 ++ + ++ + ++ +I ++ L + R Sbjct: 250 IEHINESAGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECI 309 Query: 273 AICGGQI 279 + G++ Sbjct: 310 HLASGRL 316 >gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62] gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62] Length = 422 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 151/400 (37%), Gaps = 19/400 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + + VAVSGGSDS LL+A + A++VDH R AK E VS++ Sbjct: 27 LRSGPVGVAVSGGSDSTALLLACVEWAKS---NGVAVHAVTVDHGQRVEAKQEAIAVSEL 83 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + L + HS+++ + + A AR+ARYA +++ A+ ++ HT DD ET Sbjct: 84 TAELGVEHSILTLETLEAGANFQARARDARYAAMAQWAQARRLAVVAVGHTADDVAETFL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G L+ M + W RP L +R+ +R FL + I W +DPSN Sbjct: 144 MRLARGAGVDG--LAQMVGSWTAHEMSW-VRPLLGFKRQALRDFLTAQRIVWSDDPSNQS 200 Query: 197 DRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 ++ R R + I+ L +D + A + + Sbjct: 201 IKYTRTAAREVLAALAPLGIEPETLRHVAASLRDASDALYVQTAEAATAVFSQDAGGALT 260 Query: 252 ISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + + + L + + P ++++ +S ++G + Sbjct: 261 FETKAFHALPIDIQRRLFMAAIRWIATRAYAPRRDEQKQLLRASESA--VTATLGGCLFT 318 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIP 369 A I+R + +WDGR+ + + I V P Sbjct: 319 NAAGCSTISREPAATQGPVPV---DAIWDGRWSVTGKYNGDLHIAALGEAGIAVCPDWRN 375 Query: 370 PIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAF 408 + + + + P+ G L+ AP + + + + F Sbjct: 376 TGLIRSTVLASPAIWYGDRLIAAPCAGWSNGWLARIVADF 415 >gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217] gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217] Length = 436 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 40/329 (12%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75 + A L+AVSGG DS+ L KI F + LR + + +V Sbjct: 16 LLNARFLLAVSGGLDSVVLAHLFSEC-------KIDFEIAHCNFNLRGKESDADAVFVEK 68 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +L + + ++ + + AARE RY E + + + TAH D Sbjct: 69 LAEKLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHAKDD 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + R G+ T + N + RP L RE+I ++ ++W ED Sbjct: 129 LETFLINLSRGSGLNGL-------TGITAENDRLVRPLLPFSREEILTYAEANTLAWRED 181 Query: 192 PSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 SN D++ R +R L + ++ + + + A+L + +T Sbjct: 182 SSNASDKYLRNHLRHHAIPALEEAAPQFLTQFQKSQQHLKETALLLEDYTALLFSQIVTQ 241 Query: 245 HMRSIIAISQDILNID--STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 + Q + +L+ LL+ I +L + GK Sbjct: 242 SFKGYQFNIQKLKETPNTKAVLYQLLKDFEFTAWDDIYD---------LLDAQPGKYVAT 292 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILY 331 + R++ DR +FL +T + +L+ Sbjct: 293 TKHRLIKDR--DFLLLT-EHQAKTEEVLW 318 >gi|330872710|gb|EGH06859.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 441 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 26 VGFSGGLDSTVLLHLLAELARRESLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALDVA 83 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V K +P L AAR+ARY ++ + +++T DDQ ET+ R R Sbjct: 84 FELVRVKV-EPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ Q+ + W EDPSN D +F R Sbjct: 141 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARQQGLRWVEDPSNDDQQFSRNF 197 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 198 LRSQVLPLLTSRWPQATASLARTAGHLAEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 257 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L + R+S A + + R+ + R + + R Sbjct: 258 LGPIARLSGARQRNVMR-HWLAPLTRLPDTDHWAGWEALRDAAQDARPLWRLADGALHRA 316 Query: 313 ANFLWITRA 321 +W A Sbjct: 317 QGCIWWLPA 325 >gi|303231002|ref|ZP_07317745.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6] gi|302514384|gb|EFL56383.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6] Length = 320 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 19/316 (6%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL P A +LVA SGG DSM LL L + R + ++DH +R + E++ V Sbjct: 10 SLFPPEARVLVACSGGPDSMVLLDVLQYIKVHRK-AQWTIGVTTMDHSIRRESPSELQMV 68 Query: 74 SDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C++ + + + + L R RY +E A+ + I+TAH D Sbjct: 69 QSYCNKRNLPFWGIKKDIPTIARERKESLETVGRCERYKWFNELAEREHYEYIVTAHHKD 128 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R KG ++GM I +D + I RP L +++I + ++I +C Sbjct: 129 DQGETILAHILRGSGIKG--ITGMS-VISHDYAVPIVRPLLAVTKDEILEYARLQDIEYC 185 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 D SN D ++ R R+R V + L D ++ + + R Sbjct: 186 LDASNEDVKYNRNRIRHDV----IPTLKTINPNVVDALCRLGDIAQVDEAYLNGESQRLF 241 Query: 250 IAISQDILNID--STLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVS 303 I + Q + N S L ++ Q+ +P E++ +++G+ + Sbjct: 242 IQLVQPVDNGFRVSRRRMRALPLAMQRRLWQLMIPSVSLSLAHQEQLAHIIRTGEAKTFT 301 Query: 304 IGRVVIDRRANFLWIT 319 I +V I+ + + + + Sbjct: 302 IQKVTINAQCDTIHVY 317 >gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus casei BL23] gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus casei BL23] gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W] gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II] Length = 436 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%) Query: 10 RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F R +LVAVSGG DSM LL + + DH LR ++ Sbjct: 4 KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V +L++ W+ S Q AAAR+ARYA ++ A +A ++MTAH Sbjct: 58 EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ R R L G+ + + RP L + IRS+ Q N+ + Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRAWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SN D + R ++R V + Q ++ +A+ + R Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306 + + + S + R+ Q R + V+ L K +G Sbjct: 235 QVDDATVNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294 Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335 + + + +TR P ++ Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324 >gi|226954290|ref|ZP_03824754.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244] gi|226834961|gb|EEH67344.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244] Length = 463 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 138/384 (35%), Gaps = 30/384 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L+ SGG DSM LL + + + AI +DH L++ + + Sbjct: 24 AQHFTEKTQFLIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGIL 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V L I + L AR ARY +H +++ AH DQ Sbjct: 78 VQQQSEALNIPCIIQKVSVDA--GNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ +R G+ D + I RPFL RE I + Q + DP Sbjct: 134 ETLLLRLFSGAGVNGLAAMQQIDNR---KDFTIWRPFLDLSREQIEQWSNQLGFEYVIDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N+D ++R R + + L + KM+ + A ++ L + + Sbjct: 191 TNSDIHYDRAWCREELWGV-LEKRFPKMQSAVARTSYLMQDAAEILDDVLKADYQQCVVD 249 Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 Q + + + LL SA I G + P Y ++R+ ++F K + + I Sbjct: 250 HQLDLEQLAQLSAARQRQLL--SAWIKGDEQYRPSYEMVKRLQNEVIFSKPDAQASLHIH 307 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 R L+ R LY E+ + + IQ+ + Sbjct: 308 PYYYLRYQKRLYRLR------HDELYAEKVSTIPNISPLCFFAGQSIQVAAGKFEIISQT 361 Query: 366 SGIPPIIAQRALSSMPSKEGGKPL 389 G+ P + R L + ++GG+ + Sbjct: 362 VGLAPELLGRELKLL-KRQGGEKI 384 >gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus DSM 19965] gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus DSM 19965] Length = 466 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 127/315 (40%), Gaps = 21/315 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+AVSGG DS+GLL+A++ + S F ++DH LR+ + +EV YV+ +C Sbjct: 5 KKDKILLAVSGGPDSLGLLLAMNELKSSEGF---SIGCCTIDHHLRKESAEEVIYVNKIC 61 Query: 78 SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I V+ + Q AARE RY + E T I AH DDQ E Sbjct: 62 EELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAE 121 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV R R GLSGM Y RPFL +++I++++ + D + Sbjct: 122 TVIHRLIRGGGM--TGLSGMLPKREY-----FIRPFLAVTKKEIQAYIDEFPYIPAHDKT 174 Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N R ++R + ++ + QD + V K++ Sbjct: 175 NDIPDVTRNKIRLQLIPYLKKYNPNIVNTICRTAAIMQDEDEYIRAEVLNFAKKHIKKEH 234 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + +++ + L ++R + + Y S+ER + SGK G ++ Sbjct: 235 GFTVLNTEEFKFVMPALQRRIIRYIFSEYNNEHYTLDYISVERFRELIYSGKTGNITSSS 294 Query: 307 VVIDRRANFLWITRA 321 ++ + I Sbjct: 295 NMLLKIEKGYCIFTE 309 >gi|257886017|ref|ZP_05665670.1| PP-loop family protein [Enterococcus faecium 1,231,501] gi|257821873|gb|EEV49003.1| PP-loop family protein [Enterococcus faecium 1,231,501] Length = 484 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 31 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 88 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFAAG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FRFSAEMI 270 >gi|227894505|ref|ZP_04012310.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM 16047] gi|227863664|gb|EEJ71085.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM 16047] Length = 425 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 129/328 (39%), Gaps = 23/328 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA S G DSM LL L + +F A DH LR ++ E + Sbjct: 14 LNDKKLLVASSAGPDSMALLDMLWGMQKKCNFA---VIAAHFDHQLRVDSEKETEILKKY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I W K+ +PQ G+ AAAR ARYA ++ A NA ++TAH DD LE + Sbjct: 71 CRQKEIPFFSTKWLKSQQPQRGVEAAARHARYAFLTMVANEQNADYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M + + + RP L ++++ + IS+ D +N Sbjct: 131 LLKFIRSGNPEEMNSLQAIGKM---HGIKLLRPLLAYSKQELLDYDRTHEISFIIDSTNE 187 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +D R R+R V + + + K+N V M+ + + ++ Sbjct: 188 EDETMRNRLRHHVVPLLKKENPALLHNALNFSQKMNKLVEMVDDRLTEI--GTVEPFLGR 245 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 I L L I + ++ K +R ++G + + + Sbjct: 246 AYRISEEKLANLTTDETTIFWQKA------------IWQKYHRRVNQNLGNFDVQKYQGY 293 Query: 316 LWITRA--VRNLPTLILYPEETTVWDGR 341 ++ R + + + ++ ++ GR Sbjct: 294 FYLFRKNMAKVVEPQTIKVDQEFIFQGR 321 >gi|298208541|ref|YP_003716720.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559] gi|83848464|gb|EAP86333.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559] Length = 436 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 121/328 (36%), Gaps = 40/328 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 +L+AVSGG DSM LL + + + + LR + + V + R Sbjct: 20 KLLLAVSGGLDSMVLLHLCKA-------SGLNIAIAHCNFNLRGKESDADTLLVKEEADR 72 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L+I V + + + + AARE RY E K + ++TAH +D +ET Sbjct: 73 LQITCHVEHFNTESYAADIKVSIQIAARELRYQWFDEVIKEFDYNYVLTAHHLNDDVETF 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ + + +N I RP L RE+I ++ L I W ED SN Sbjct: 133 IINLTRGTGLDGL-------SGIPKVNNTIIRPLLPFSREEIHTYALAEKIIWREDASNA 185 Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D++ R +R + + L Q + + +L +T + Sbjct: 186 SDKYLRNSIRHHIIPKLEDLNPVFLDNFKRTQHHLQQSSKLIEDYTNVLFKTLVTHTDKG 245 Query: 249 IIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 +IS LN +L+ LL+ + + +SGK+ Sbjct: 246 F-SISLTKLNDFENHDAILYQLLKAFKFKDWSSVYA---------LKDAQSGKQIFSETH 295 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPE 333 R +I + L + T+ + E Sbjct: 296 R-LIKHQNALLLSVNEALHSETVTVEAE 322 >gi|160935943|ref|ZP_02083317.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC BAA-613] gi|158441185|gb|EDP18902.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC BAA-613] Length = 479 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 69/348 (19%), Positives = 116/348 (33%), Gaps = 52/348 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 L ++ AVSGG+DS+ LL L + R I A+ V H LR E A + + Sbjct: 16 HMLEPGDRVIAAVSGGADSVCLLALLCAWREPRG---ISIRALHVHHGLRGEEADRDADF 72 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT-------- 120 V +C L + ++ ++ A R RY + + A Sbjct: 73 VRSLCEGLHVPCHILKVDVRGLAAEKGMSEEEAGRFLRYEALEKEALDWEGEDRASGARS 132 Query: 121 -------------------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 I AH DQ+ET+ R GL GM + Sbjct: 133 GQDGDWAHGGLAGSSLSPVKIAVAHHSGDQVETILHNLFRGS-----GLFGMKGIVYRR- 186 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 I RP L R+ I +L ++ + +D +N + R R+R + + Sbjct: 187 -GRIIRPLLDVDRDCILKWLADHDLPYVQDSTNDTLHYTRNRIRNQLLPEIEQYVNRGAA 245 Query: 222 ----KFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDILNIDSTLLFYLLRVSAAI 274 + L + + + ++ H+R ++ L L Y++ Sbjct: 246 GNILRLGRLAAQADEYLESQAAAWIKAHVRKNPGAYIPAEAFLQEPEILRSYVVMSLLKE 305 Query: 275 CGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITR 320 GG G + +VM GK+ + G I +W+ R Sbjct: 306 LGGASRDLGLVHVSQVMELAGRAVGKQVDLPYGLSAIREYE-GIWMGR 352 >gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like [Candidatus Koribacter versatilis Ellin345] gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter versatilis Ellin345] Length = 464 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 14/307 (4%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 +L P + VAVSGG+DS+ LL L + RS I S + + H +R A + + Sbjct: 12 HALFRPGDRVGVAVSGGADSVALLRGLLEL---RSELGIALSVVHLHHGIRGAEADADEQ 68 Query: 72 YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V+D+ + ++ + S+ + L AAR+ RYA ++ + TAHT Sbjct: 69 FVADLAGQFDLSLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDKVATAHT 128 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R +G+ +L I RP L R ++ ++L N Sbjct: 129 LDDQAETVLLRILRGTGTRGLAAIPPFRDASPELAACIVRPLLGTERTEVETYLKSLNQP 188 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W ED +NTD + R R+R + + +++ ++ A + H Sbjct: 189 WREDSTNTDPKHLRNRIRHELLPMLEAEYNPALRQSLANLAEIARAEEEYWGPIVERHFD 248 Query: 248 SIIAISQDILNIDSTLLFYLL----RVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCV 302 I+ ++ +D + L L R ++ +P + ++ + F++ ++G + Sbjct: 249 QIVTMTNFGAVLDRSRLSELPQAFRRRVLLALHDRLDMPVSFDGVDFELDFIEGNQKGHI 308 Query: 303 SIGRVVI 309 + + I Sbjct: 309 THAQASI 315 >gi|225420299|ref|ZP_03762602.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme DSM 15981] gi|225041116|gb|EEG51362.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme DSM 15981] Length = 499 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 67/369 (18%), Positives = 125/369 (33%), Gaps = 61/369 (16%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL IE L ++ AVSGG+DS+ LL L + R I+ A+ V H Sbjct: 8 FLETIEQY----HMLRQGGRVVAAVSGGADSVCLLALLCGL---RGELGIQVRAVHVHHG 60 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA-- 114 LR + A + +V +C ++ ++ + + A R RY + E A Sbjct: 61 LRGDEADRDAEFVRQLCEGFKVPFALRRVDVREFARAKKLSEEEAGRLLRYRVFEECAGA 120 Query: 115 ------------------------------KTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + + + AH DDQ ET+ R Sbjct: 121 WERGAWAEWADEGTIGPEGAGGGNAWLKADRAADGVRVAVAHHGDDQAETILHNLCRGSG 180 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 KG+G + I RP + R++I +L +S+C+D +N D + R R+ Sbjct: 181 LKGLGGM-------RPVRGRIIRPLIAVSRKEILEWLAANGLSFCQDSTNDTDHYTRNRI 233 Query: 205 RRFVRDIDLHALYLKM--------KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 RR + + + + ++ ++ I+ + Sbjct: 234 RRQLIPMLQEQVNPGAVESILRVGRLAGQADDYLSGQAREWTGHHVREENGRILVPGEAF 293 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVVIDRRAN 314 + L Y++ GG+ +++VM +++G+ + G + Sbjct: 294 ERLPEILRAYVIFQVMTRVGGRAKDLTSGHVDQVMGLFGMQAGRSQDLPYGIRAVREYEG 353 Query: 315 FLWITRAVR 323 + R Sbjct: 354 VVIGRRETA 362 >gi|258509511|ref|YP_003172262.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus GG] gi|257149438|emb|CAR88411.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus GG] gi|259650779|dbj|BAI42941.1| tRNA(Ile)-lysidine synthetase [Lactobacillus rhamnosus GG] Length = 435 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 117/278 (42%), Gaps = 17/278 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DSM LL + + DH LR ++ E +V Sbjct: 13 PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV Sbjct: 67 ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R L G+ + + RP L ++DIR++ + + +C+DPSN D Sbjct: 127 RLGRSGDP--AALVGIHPDQPWRKK-RLVRPLLNFSKDDIRAYANRHGLDFCDDPSNADT 183 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250 R+ R ++R V ++ Q + + VA+ + R I Sbjct: 184 RYARNQLRHQVIPAFKQQNPELLRHVQRFTTEQSGLVALAQMQLSEWQQRLRINSVTIDW 243 Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 A + I LL LLR + +P +S+ Sbjct: 244 RAAANQPRTIQLMLLVTLLRQWQPRVNHGLLMPILKSL 281 >gi|293553697|ref|ZP_06674321.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039] gi|291602272|gb|EFF32500.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039] Length = 484 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + IL AVSGG DSM LL L V F + ++H LRE + +E Y+ Sbjct: 31 QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + V W++ ++ + AR RY + + +MTAH DDQ+ETV Sbjct: 88 CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R SG+ + + + RP L +ED+ ++ + + + ED +N Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFAAG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R R+R V ++ FQ ++ +I KY+ + + ++ Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262 Query: 257 LNIDSTLL 264 + ++ Sbjct: 263 FRFSAEMI 270 >gi|251809816|ref|ZP_04824289.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|251806684|gb|EES59341.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis BCM-HMP0060] gi|329733025|gb|EGG69364.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028] Length = 432 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 19/230 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQLET Sbjct: 67 HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQLET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R + + +G++ Y + RP L ++ +I ++ I + ED S Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182 Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N D ++ R +R+ + ++ H L LK+K + D+ ++ A Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231 >gi|56460788|ref|YP_156069.1| PP family ATPase [Idiomarina loihiensis L2TR] gi|61216428|sp|Q5R0Q7|TILS_IDILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56179798|gb|AAV82520.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR] Length = 448 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 136/347 (39%), Gaps = 27/347 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F +ES+ +L ++ A+ GG+DS +L L + ++ AI +DH Sbjct: 9 LFCESLESL-----ALKPGQQLVAALGGGADSQTILDLLMRFRQQN--PQYQYLAIHLDH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119 ++ D + + + + AA RE+RY ++E T + Sbjct: 62 SFHPSSADWSSTIEHAAKSYGVKTVFEPLNVPIENRQSKEAAGRESRYRRMAEL--TEDD 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++ +DQ+ET +++ +R KG LS M + + + RP L +EDI S Sbjct: 120 AVLLLGQHRNDQIETFFLQLKRGSGPKG--LSSMAAIQPWVGSRRLCRPLLSVSKEDILS 177 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235 + Q+ ++W ED +N D R ER +R V + L + +F + ++ A Sbjct: 178 YAQQQKLTWIEDDTNYDTRIERNFLRHKVVPL----LEQRWPQFGNSVLRSAKLCAEQQQ 233 Query: 236 ---MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 L+ + L + +L+ S + L + G + SLP Y +E++ L Sbjct: 234 VMDELLQEKLYKAQKHKSHFPLSLLSEHSAAMQRALLR-VWLQGQEYSLPSYEQLEQIRL 292 Query: 293 FLKS---GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 +S + V + LW LP E Sbjct: 293 QAQSATDDSQMQVQCDGYSVRYFQYALWCDNNTGQLPADCWLAEANV 339 >gi|281420131|ref|ZP_06251130.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205] gi|281405931|gb|EFB36611.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205] Length = 449 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 20/222 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 +VA+SGG+DS+ LL+ L ++ + SA + LR E + + ++ ++C + Sbjct: 25 IVALSGGADSVALLLILKNI-------GLNISAAHCNFHLRGEESDRDEQFCINLCQQQG 77 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I+ S + + + + AAR RY+ S+ K ++A I AH DD +ET+ + Sbjct: 78 ISLSRIHFDTYAYAHLHKVSIEMAARNLRYSYFSQLVKDLHAGGICVAHHRDDNVETLLL 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ + N I RP L R+DI +L ++ + D +N +D Sbjct: 138 NLLRGSGVDGLA-------AIAPKNGNILRPLLCISRQDILQYLKEKKQDFVTDSTNLED 190 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 R ++R V + L ++ + L K ++ Sbjct: 191 DALRNKIRHHVVPL-LESINPAASENIALTAKYIRQAKSILE 231 >gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929] gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929] Length = 460 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 23/318 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VAVS G DSM LL L + + K VDH LR+ + +E RY+S+ CS Sbjct: 23 VVVAVSTGVDSMTLLYMLQHL---PRAVRPKIIVAYVDHQLRDQSVEETRYISNYCSEHG 79 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + W K+ P+ G+ AAAR RY K +T ++TAH DD +ETV M+ Sbjct: 80 LLLKQAVWPKDDHPKVGIEAAARTFRYRFFERVLKETGSTCLLTAHHGDDLVETVIMKLV 139 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R L+G+ +T + + + RP L ++ + SF I W ED +N E Sbjct: 140 RGGQL--ASLTGIRETRSFA-DANMIRPLLSFSKQQLESFAQTTGIRWFEDETNQQLAVE 196 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPKYLTVHMRSIIAIS 253 R R+R V + + ++ + +A LI + + I Sbjct: 197 RNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIEFLIQPLIHSAVGFPEKQRAEID 256 Query: 254 QDILNIDSTLLFYLLR-VSAAICGGQISLP--GYRSMERVMLFLKSGKRGCVSI---GRV 307 D L +++ + + + +P ++ V+ ++ R + Sbjct: 257 LDSL---KDFPDSVVKCLLEEVFEHYLRIPNVSVDQLDEVLGLIQQTARPQAKMDLEAGW 313 Query: 308 VIDRRANFLWITRAVRNL 325 + R L I + + + Sbjct: 314 QVRRVYQSLIICKEPQKI 331 >gi|283469801|emb|CAQ49012.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus ST398] Length = 431 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 IYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQSFNNLPNSLKMVVL 266 >gi|254514885|ref|ZP_05126946.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3] gi|219677128|gb|EED33493.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3] Length = 413 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 13/326 (3%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +L A + VA SGG DS LL AL + S +A+ +H L + A+ R+ + Sbjct: 3 ALERAAGVYVAYSGGLDSTVLLHALATSFSGL------VTALHANHGLHDDAELWARHCA 56 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++C + +++ + + G+ AAAR ARY + +++ AH DDQ ET Sbjct: 57 ELCDQWKVSFRSTRLQLNDTGDGVEAAARSARYHWFETCVEA--DAVLLMAHHQDDQAET 114 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +R R +G+G + + + RP L R D+ + Q +SW +DPSN Sbjct: 115 LLLRLLRGAGPQGLGSIPTTRAL---GHGSLLRPLLDIPRSDLAGYAAQHKLSWIDDPSN 171 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 TD RF+R +R+ V + ++ L L S+ Sbjct: 172 TDTRFDRNYLRQEVMPLLAGRWPGYRSTLSRAASQLRELNEHLPGPALPTVHGSLGDPGF 231 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + ++ L + + + P + + ++ G + ++R Sbjct: 232 QVEDLPREPALAALALRRWLRERSLVAPPAARLSEFLRQVRHGSGARLCGSGWTLERYRA 291 Query: 315 FLWITRAVRNLPT--LILYPEETTVW 338 +++ + L + P + W Sbjct: 292 AVYLCPTGLDPAPGILTIQPGQALHW 317 >gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255] Length = 371 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 13/312 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+ R F A +++AVSGG DS+ L+ G A++VDH LR A Sbjct: 26 ETKRLFSDWKASRA-LVLAVSGGPDSVALMWLAARWRRAMKRGP-DLVAVTVDHALRREA 83 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R V + L I H + W KP TGL AAAREARYAL+ + A+++ A+ ++T H Sbjct: 84 AREARQVKQLAKSLSIPHRTLRWTGPKPATGLPAAAREARYALLFKAARSLGASHVLTGH 143 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV MR R GLS M + D + RP L + + + L + I Sbjct: 144 TLDDQAETVLMRISRGSGI--AGLSAMSRETMRD-GFVLVRPLLNVPKARLIATLKKAKI 200 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVH 245 + EDP+N D F R R+R + + + + + ++ N A+ +L+ Sbjct: 201 DYAEDPTNRDLGFTRPRLRALMPALAEEGCDARNLSRLASRLMRANAALELLVDGAERFL 260 Query: 246 MRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 A + + + LL+ + G + +E ++ L+S Sbjct: 261 ALQDTAAPRPGFRTEAFMVLSEEIKVRLLQRTIDRFGCEG-PAELGKVETLLSALESAAN 319 Query: 300 GCVSIGRVVIDR 311 S R+++ R Sbjct: 320 DADSGRRILLRR 331 >gi|288927672|ref|ZP_06421519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 317 str. F0108] gi|288330506|gb|EFC69090.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp. oral taxon 317 str. F0108] Length = 453 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 43/341 (12%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L LVA+SGG+DS+ L L + K A+ + LR E + + + Sbjct: 18 LSASGRYLVALSGGADSVALFRMLLRL-------DYKVDAVHCNFKLRGEESFRDEAFCE 70 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++C +A V + ++ + + AARE RY + ++ I AH DD Sbjct: 71 NLCREHGVAFHTVHFDTAEYAALHKLSIEMAARELRYNHFEKLRNDLDMDGICVAHHQDD 130 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + R G GLSG+ N + RP L + +L + Sbjct: 131 NVETMLINLIR-----GTGLSGLTGMKPR--NGHVLRPLLAVSHAHLLDYLQALGQPYVT 183 Query: 191 DPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D +N F R ++R + + + + +++ + N A+ Sbjct: 184 DSTNLTTDFTRNKIRLTLVPLLTEINRVSTNNIAKTIERLAEAEKIFNPAIERHANDATV 243 Query: 244 V---HMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--K 295 V R + IS D L +LF L+ P +E++ L + Sbjct: 244 VREDEPRWRLGISIDRLRQTPSPEYVLFQLIHPLG-------FAP--AQIEQIAQNLDQQ 294 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 +GK+ +VIDR+ + T L + PEE T Sbjct: 295 TGKQWQSPTHTLVIDRQMLLVEQTLPASKLAKTMRIPEEGT 335 >gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334] gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334] Length = 436 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%) Query: 10 RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F R +LVAVSGG DSM LL + + DH LR ++ Sbjct: 4 KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V +L++ W+ S Q AAAR+ARYA ++ A +A ++MTAH Sbjct: 58 EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ R R L G+ + + RP L + IRS+ Q N+ + Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRAWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SN D + R ++R V + Q ++ +A+ + R Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306 + + S+ + R+ Q R + V+ L K +G Sbjct: 235 QVDDATVNWRAASSQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294 Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335 + + + +TR P ++ Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324 >gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 436 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%) Query: 10 RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F R +LVAVSGG DSM LL + + DH LR ++ Sbjct: 4 KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V +L++ W+ S Q AAAR+ARYA ++ A +A ++MTAH Sbjct: 58 EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ R R L G+ + + RP L + IRS+ Q N+ + Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SN D + R ++R V + Q ++ +A+ + R Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306 + + + S + R+ Q R + V+ L K +G Sbjct: 235 QVDDATFNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294 Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335 + + + +TR P ++ Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324 >gi|282860306|ref|ZP_06269375.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010] gi|282586903|gb|EFB92139.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010] Length = 455 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 29/257 (11%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + V+ F+ + L LVA+SGG+DS+ LL+ LH + A + L Sbjct: 2 LNKVQNFINKHQLLDNNRRYLVALSGGADSVCLLLILHKL-------GYAVEAAHCNFKL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + ++ D+C R I ++ + + + + AAR+ RY + + I Sbjct: 55 RGEESNRDEQFCIDLCKRQNIKIHLIHFDTREYAALKKISIEMAARDLRYRYFEQLCRDI 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A I H DD +ET+ + R KG+ T + +N I RP L C +EDI Sbjct: 115 DAAGICVGHHQDDSVETILLNLVRGTGIKGL-------TGIKPINGLIIRPLLVCSKEDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 ++L ++ D SN R ++R R + HA+ + V Sbjct: 168 NAYLKAEGATYITDSSNLVPDVMRNKIRLQVLPLLREINPSVEHAIMQTASHLIETERVV 227 Query: 231 NNAVAMLIPKYLTVHMR 247 AV + H R Sbjct: 228 EGAVETALSSVAFSHNR 244 >gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 426 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 74/406 (18%), Positives = 140/406 (34%), Gaps = 25/406 (6%) Query: 7 ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E V F++ ILV +SGG DS+ LL L +K +DH R+ Sbjct: 3 EIVLRFLKMRCDETRPILVGLSGGPDSIALLYLLLKCAK---MIPLKLGIAHIDHRWRQE 59 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E + + L + + + L AA R+ RY +E A + ++ Sbjct: 60 SEKEAETLKTLAESLHVPFHLKVLDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLG 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ET+ R + + L G+ +T L I RP L + I S+L + + Sbjct: 120 HHQDDQAETILKRILEGASL--VKLRGIAETKQQG-GLAIWRPLLEVDKAKILSWLSKHD 176 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I + D +N D +F R ++R + ++K K + + +L + Sbjct: 177 IPFFNDSTNLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEHFFQTHLQPY 236 Query: 246 MRSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300 I+ + D+ F L ++ + + M+ + ++ + Sbjct: 237 FEKILRTPIGVWVDLSQKQPGTSFELKQLLRYVLSEEGISFSRSQMDVAVKCIREKRANC 296 Query: 301 CVSIGRVVIDRRANFLWITRA-----------VRNLPTLILYPEETTVWDGR-YQFQNLS 348 C+ G + ++I + V + + P VW G + S Sbjct: 297 CIEAGDHEVQFDRGNIFIGKKLWADWKVAYEFVESDEKDLKLPTWRDVWQGHFFAIIPWS 356 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALS-SMPSKEGGKPLLAPF 393 D P + + + +P ++ F Sbjct: 357 DDCKVDLPVTGTANWLDKWWTNHKVPAFMRWKIPVVWQNNRIVYEF 402 >gi|329737901|gb|EGG74129.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045] Length = 432 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 19/230 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQ ET Sbjct: 67 HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQFET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R + + +G++ Y + RP L ++ +I ++ I + ED S Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182 Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N D ++ R +R+ + ++ H L LK+K + D+ ++ A Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231 >gi|166033184|ref|ZP_02236013.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC 27755] gi|166027541|gb|EDR46298.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC 27755] Length = 516 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 56/302 (18%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDH 60 + V+ +V L ++V VSGG+DS+ LL L + +R G ++ +A+ V H Sbjct: 3 QKVKAYVEEQHMLEKKDRVIVGVSGGADSVCLLFVLTKLRDERQKSGDGTLEITAVHVHH 62 Query: 61 CLRETAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 LR + D + RYV +C + V + A R+AR E Sbjct: 63 GLRGDSADADERYVRKICDAWNVPLVVYHKNIRELAKCWNMSEEEAGRKARREAFLEVRN 122 Query: 116 TI-----------------------------NATLIMTAHTFDDQLETVYMRSQRDYAEK 146 I AH +D+ ETV R + Sbjct: 123 QYSDVPCDNAQYGDIQSRHAECANGRQESAQGFGKIALAHHRNDEAETVLFHLCRGTDVR 182 Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 G+G + ++ + RP L R +I S+L + IS+C D +N ++ + R ++R Sbjct: 183 GLG-------GIAPVSGFWIRPLLNIGRNEIESYLEKVGISYCTDETNAENVYARNKLRN 235 Query: 207 FV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 V +I+ A++ + Q +R ++ + V M I +Y + ++ I ++ Sbjct: 236 QVIPQLEEINEQAVWHISRTAQSVR-ELWSYVDMQIEEY----KKKVLQIEPQSCRKETN 290 Query: 263 LL 264 L Sbjct: 291 LA 292 >gi|218259686|ref|ZP_03475329.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii DSM 18315] gi|218224957|gb|EEC97607.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii DSM 18315] Length = 444 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 45/357 (12%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR ++ R L +LV VSGG+DS+ LL L + + LR Sbjct: 3 DVVRAYIEKYRLLTENRPVLVGVSGGADSIALLTILVE-------SGYSCTVAHCNFHLR 55 Query: 64 -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + + + ++V + +L + + + + AARE RY E Sbjct: 56 GDESLRDEQFVREYARKLDVPFLMTDFDTRKYAASRRLSIEMAARELRYDWFEEQRVATG 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AH DD +ET+ M R +G+ + + N ++ RP L REDI Sbjct: 116 AQAIAVAHHRDDSVETLLMNLVRGTGIRGL-------SGIRPKNGFVVRPLLAVSREDIL 168 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +L +R + + D +N D + R +R V + ++ A+ + Sbjct: 169 EWLARRGLRYVTDSTNLSDAYTRNFIRLRVLPLLKEINPSVKNSIARTSEHLSAVEAIYL 228 Query: 239 PKYLTVHMRSIIAISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 ++ R+ + D L+I +L+ LL+ + E V Sbjct: 229 --HVVEEARNTVVKQGDRLSIATLMHYPSPDAILYELLK---------TYDFTRQVAEDV 277 Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345 L L +SGK S R++ DR ++L ++ V+ VW G + Sbjct: 278 YLSLTKESGKTFFSSTHRLIKDR--DYLLLSPLVKEEVCEYTLTGGEKVWSGPVELS 332 >gi|27469192|ref|NP_765829.1| hypothetical protein SE2274 [Staphylococcus epidermidis ATCC 12228] gi|57866063|ref|YP_187744.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A] gi|242241594|ref|ZP_04796039.1| cell cycle control ATP-binding protein MesJ [Staphylococcus epidermidis W23144] gi|293366151|ref|ZP_06612838.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W2(grey)] gi|61217168|sp|Q5HRP5|TILS_STAEQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217351|sp|Q8CQV3|TILS_STAES RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|27316741|gb|AAO05916.1|AE016751_211 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57636721|gb|AAW53509.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A] gi|242234975|gb|EES37286.1| cell cycle control ATP-binding protein MesJ [Staphylococcus epidermidis W23144] gi|291319745|gb|EFE60104.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis M23864:W2(grey)] Length = 432 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 19/230 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQ ET Sbjct: 67 HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQFET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R + + +G++ Y + RP L ++ +I ++ I + ED S Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182 Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N D ++ R +R+ + ++ H L LK+K + D+ ++ A Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231 >gi|21674432|ref|NP_662497.1| MesJ protein [Chlorobium tepidum TLS] gi|61216669|sp|Q8KC15|TILS_CHLTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21647616|gb|AAM72839.1| tRNA(Ile)-lysidine synthetase [Chlorobium tepidum TLS] Length = 331 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 49/340 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80 +L+AVSGG DSM LL SV S + + LR + + +V D C+ L Sbjct: 24 VLLAVSGGPDSMALLHLFASVAS---VLHCRLGVAHCNFMLRGDASDADESFVRDACAEL 80 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V + + + + AR RY E + + T I T H DD ETV Sbjct: 81 GIDFHVRRFDTASVSSAWKKSIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVL 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R G+ + + I RP L R +I ++L ++ + W +D +N Sbjct: 141 FNLFRGAGISGL-------RGIRVRHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEG 193 Query: 197 DRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 ++R +R V + H L +++ + ++ + + I + L H Sbjct: 194 IEYDRNFIRNRVIPVIEERFAHKLMPSLQRISEHAGELEEFIDLHISRLLEAHPG----- 248 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVI 309 + GG++ + R + ER + ++ K +S+G V+ Sbjct: 249 -------------------LDLAGGKLHVGTMRQLSMFERKEILKRALKLQGLSVGSNVL 289 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349 +R A L +A R++P E + DG +F+ + Sbjct: 290 NRIA-GLLDNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 326 >gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208] Length = 240 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 13/227 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFC 76 Query: 78 SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I + + Q G+ AR RY + N + AH DDQ+E Sbjct: 77 ERHGIPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R A +G SG+ I RPFL + +I ++ + +++ D S Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAML 237 N + R R R + + A+Y ++F + + + L Sbjct: 194 NASQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFRFLEAL 240 >gi|262374325|ref|ZP_06067601.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205] gi|262310883|gb|EEY91971.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205] Length = 463 Score = 203 bits (517), Expect = 4e-50, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 115/317 (36%), Gaps = 23/317 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 V + L+ SGG DSM LL + + ++ I +DH L+ ++ Sbjct: 19 RVLAQTQHFSKDTQFLIGCSGGMDSMLLLYLMSEIFPSQTRS------IYIDHQLQSSST 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V +L I + L AR ARY +H K+ +++ AH Sbjct: 73 EWGCLVQKQSEQLNIPCVIQKVHVDA--GNLEQQARHARYQAYIKHLKSH--EILVLAHH 128 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ ET+ +R G+ D +L I RPFL R+ I + Q Sbjct: 129 QQDQAETLLLRLFSGAGVNGLSAMQAYDV---RKDLTIWRPFLELSRQQIEEWAKQIGFD 185 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + DP+N D ++R R + + L + KM+ + ++ L + Sbjct: 186 YVVDPTNHDTHYDRAWCREELWPV-LEKRFPKMQSAVSRTSYLMQDATEILDDVLQSDWK 244 Query: 248 SIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRG 300 ++ +L + LL SA I G P Y + ++ ++F K + Sbjct: 245 LCATENELDLTRLLELSDARKRQLL--SAWIKGKDQYRPSYDMVKRLQDEVIFAKPDAQA 302 Query: 301 CVSIGRVVIDRRANFLW 317 + I R L+ Sbjct: 303 TLHINSYYYVRYQKKLY 319 >gi|253735244|ref|ZP_04869409.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus TCH130] gi|253726804|gb|EES95533.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus TCH130] Length = 431 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDNYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEK 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|42526849|ref|NP_971947.1| hypothetical protein TDE1341 [Treponema denticola ATCC 35405] gi|61217302|sp|Q73N15|TILS_TREDE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41817164|gb|AAS11858.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 84/343 (24%), Positives = 145/343 (42%), Gaps = 35/343 (10%) Query: 1 MFLSPIESVRFFVRSL----VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 M S ++ V SL P +L+AVSGG+DSM +L A + SD + + + Sbjct: 7 MAKSFLKDVLLGFSSLCDRTAAPLRLLLAVSGGADSMAMLSAFLELKSDINA---EIFVL 63 Query: 57 SVDHCLRETAK--DEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYA 108 +V+H +R + + ++V D C+ I + V + +TG+ AAR RY Sbjct: 64 TVNHNIRPEKETLGDAQFVLDFCNDKCPCILAEIPKNTVFDEAKNRKTGIEDAARFLRYN 123 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A ++NA I+TAH +D ETV MR + + L G+ RP Sbjct: 124 EFEKAADSLNADYILTAHNKNDNYETVLMRLFQGSEPE--ALMGIS-----PRRGRFIRP 176 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L R +I +L ++NI W ED +N + + R +VR + + L + + D + Sbjct: 177 MLNISRSEIEEYLKEKNIPWREDATNLEASYLRNKVRHNLLPV-LSICFDGWQSGLDKSL 235 Query: 229 KVNNAVAML-IPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQI 279 A I Y T ++ +D L++D L L+ + G+ Sbjct: 236 AKIKAQNDFVIASYKTKKEEWVLDKKEDCCRCKFLFFLSLDEALKLKFLQEGLILLKGKR 295 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 +P Y + +M S + + G I + + + + +AV Sbjct: 296 RIP-YSVFDDLMKL--SDTKKIIFSGGFCIKKEGDEVLLFKAV 335 >gi|282879019|ref|ZP_06287781.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310] gi|281298854|gb|EFA91261.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310] Length = 441 Score = 203 bits (517), Expect = 5e-50, Method: Composition-based stats. Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 50/410 (12%) Query: 15 SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 SL++ + LVA+SGG+DS+ LL L ++ AI + LR E + + + Sbjct: 16 SLLHKDELYLVALSGGADSVCLLRCLKAL-------GYHLEAIHCNFRLRGEESDRDELF 68 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++C +L I + + + AARE RYA K + A + H Sbjct: 69 CQELCQKLEIPLHLAHFDTRSYAQLHHVSIEMAARELRYAHFKNLCKAMGAGGVCVGHHQ 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ + R G+ T + N +I RP L R++I +L ++ Sbjct: 129 DDSVETILINLVRSTGIHGL-------TGIAPKNDYIYRPLLCVSRKEITDYLKTIQQNY 181 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH--- 245 D +N +R ++R V + ++ + V++L V Sbjct: 182 ITDSTNLVPDVQRNKMRLEVIPHLESINPAAQQNILQTAQRLADVVSILDGWMERVAQWK 241 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVS 303 R +L+YLL+ + ++ + SG+ Sbjct: 242 PRGPYWCFPLKEVTHEYILWYLLK---------NYQFTSKQVDNIYENRNNGSGRVWTSK 292 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358 ++IDR L P IL P +D + + + LS + I Q+ Sbjct: 293 THELLIDRDQLVLAQRNNEPQKPLTILEPG-VFRYDAKLKVR-LSVTTAPISAQTVKDKR 350 Query: 359 -----YRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF--SRFMTKFD 401 + + P + P+ Q A P G LL+ + R M+ F+ Sbjct: 351 CAYMDFNQVSFPLVLRPV--QPADRFQPFGMKGTKLLSDYMTDRKMSLFE 398 >gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444] gi|122942816|sp|Q0C5V2|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444] Length = 367 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 14/331 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+ + + + VAVSGGSDS+ LLI H + R A++VDH LR + Sbjct: 12 EAALGALPDRLLDTPVGVAVSGGSDSLALLILAHRWAARRGRV---LRALTVDHGLRPES 68 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + E V +C+ + I H ++ + + P+ +A R R+A ++ + L++T H Sbjct: 69 RAEAEAVGRLCADMGIEHDILRLEGAAPR---QSALRRGRHAALARTIADKSGHLLLTGH 125 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T DDQ ET MR+++ G+ + ++I+RP L RRE +R+FL Sbjct: 126 TADDQAETFLMRARQGSGWYGLAGMRPLSLSPVWPEGEGVFIARPLLGIRREALRAFLRD 185 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL--KMKKFQDLRVKVNNAVAMLIPKY 241 + W +DPSN + FERVR+RR + + + + +FQ LR+ + A+ + Sbjct: 186 EGLGWADDPSNDNPAFERVRMRRLLCPEMSRNVPVLSLVDRFQTLRMIEDGAIWRWMTAN 245 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I L + I G+ P S+ R+ + S Sbjct: 246 VRAGEAGIHV--ASFAGHPPERAARALGMLLQIAAGREMPPRGESLRRLAEEIVSKGDFR 303 Query: 302 -VSIGRVVIDRRANFLWITRAVRNLPTLILY 331 ++G I R + + LP Sbjct: 304 GATLGGCRITARRTHICLKPECGPLPPGTAA 334 >gi|169825696|ref|YP_001695854.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41] gi|168990184|gb|ACA37724.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41] Length = 468 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 14/238 (5%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 ++ F+ L H+L+AVSGG DSM LL H + + I+ A+ VDH LR Sbjct: 6 KIKTFIEKEQLLQQGDHLLIAVSGGVDSMALL---HYFVQTKEHWNIRVEAVHVDHMLRG 62 Query: 65 TAKDEVR-YVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 A E R +V C + + +K + R RY E NA Sbjct: 63 EASAEDRAFVQKYCDDNGVYLHATAISIPTILAKENGNIQLICRRERYRYFKEVLYETNA 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DDQLE+V M ++ + G+ ++ + RPFL + +I Sbjct: 123 NKLVTAHHADDQLESVLMALTKNATMN--SMQGIRPQRNFE-GKTLIRPFLTVTKTEIGE 179 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +LL++ +++ ED SN+ D + R R R V + ++ ++ A L Sbjct: 180 YLLRKGLNYREDASNSKDTYVRNRFRHHVVPLLEAENPRVTEQVTHFTSQLQEDNAFL 237 >gi|284023518|ref|ZP_06377916.1| hypothetical protein Saura13_02954 [Staphylococcus aureus subsp. aureus 132] Length = 431 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|262052536|ref|ZP_06024733.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3] gi|282925584|ref|ZP_06333237.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765] gi|259159583|gb|EEW44630.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3] gi|282592488|gb|EFB97500.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765] Length = 431 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|253730977|ref|ZP_04865142.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725289|gb|EES94018.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 431 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|57651385|ref|YP_185441.1| hypothetical protein SACOL0553 [Staphylococcus aureus subsp. aureus COL] gi|87161906|ref|YP_493196.1| hypothetical protein SAUSA300_0487 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194269|ref|YP_499061.1| hypothetical protein SAOUHSC_00484 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220683|ref|YP_001331505.1| hypothetical protein NWMN_0471 [Staphylococcus aureus subsp. aureus str. Newman] gi|161508749|ref|YP_001574408.1| hypothetical protein USA300HOU_0503 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142299|ref|ZP_03566792.1| hypothetical protein SauraJ_11802 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452810|ref|ZP_05700805.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948] gi|262049994|ref|ZP_06022853.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30] gi|294850369|ref|ZP_06791102.1| cell cycle protein MesJ [Staphylococcus aureus A9754] gi|304380527|ref|ZP_07363203.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|61216391|sp|Q5HIG6|TILS_STAAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|57285571|gb|AAW37665.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus COL] gi|87127880|gb|ABD22394.1| MesJ/Ycf62 family protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201827|gb|ABD29637.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373483|dbj|BAF66743.1| isoleusyl-tRNA-2-lysl-cytidine synthase [Staphylococcus aureus subsp. aureus str. Newman] gi|160367558|gb|ABX28529.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257859496|gb|EEV82349.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948] gi|259161929|gb|EEW46512.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30] gi|269940080|emb|CBI48456.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus TW20] gi|294822793|gb|EFG39229.1| cell cycle protein MesJ [Staphylococcus aureus A9754] gi|302750400|gb|ADL64577.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340931|gb|EFM06855.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196192|gb|EFU26548.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus subsp. aureus CGS01] gi|320139404|gb|EFW31282.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144181|gb|EFW35949.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329313228|gb|AEB87641.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus T0131] gi|329729763|gb|EGG66160.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21189] Length = 431 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|187931484|ref|YP_001891468.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] gi|226695538|sp|B2SG31|TILS_FRATM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|187712393|gb|ACD30690.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] Length = 398 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEGFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269 >gi|56708293|ref|YP_170189.1| PP-loop family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110670764|ref|YP_667321.1| PP-loop family protein [Francisella tularensis subsp. tularensis FSC198] gi|134301750|ref|YP_001121718.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis WY96-3418] gi|224457415|ref|ZP_03665888.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|254369106|ref|ZP_04985118.1| PP-loop family protein [Francisella tularensis subsp. holarctica FSC022] gi|254370777|ref|ZP_04986782.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875114|ref|ZP_05247824.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|61216407|sp|Q5NFK3|TILS_FRATT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123359434|sp|Q14H05|TILS_FRAT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988060|sp|A4IXE6|TILS_FRATW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54113183|gb|AAV29225.1| NT02FT1257 [synthetic construct] gi|56604785|emb|CAG45864.1| PP-loop family protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321097|emb|CAL09247.1| PP-loop family protein [Francisella tularensis subsp. tularensis FSC198] gi|134049527|gb|ABO46598.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis WY96-3418] gi|151569020|gb|EDN34674.1| hypothetical protein FTBG_00586 [Francisella tularensis subsp. tularensis FSC033] gi|157122056|gb|EDO66196.1| PP-loop family protein [Francisella tularensis subsp. holarctica FSC022] gi|254841113|gb|EET19549.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159523|gb|ADA78914.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. tularensis NE061598] Length = 398 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + +I F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEGFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269 >gi|303235677|ref|ZP_07322284.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN] gi|302484124|gb|EFL47112.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN] Length = 461 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 23/256 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ +++ L +V +SGG+DS+ LL+ L + A + Sbjct: 1 MLNKVKAYIEAHHLLHEDGKYIVGLSGGADSVALLLVLKHL-------GYNIEAAHCNFN 53 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR E + + Y +C +L + ++ + + + AAR RY + Sbjct: 54 LRGEESNRDEEYCKKLCEKLNVPFHLIHFDTILYAELHKVSIEMAARTLRYGYFENLRRD 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I A I AH DD +ET+ + R +G+ + N I RP L C R + Sbjct: 114 IQADAICIAHHRDDSVETILLNLIRGTGMRGL-------VGIRPKNSNIVRPMLDCSRHE 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I FL ++ +++ D +N D +R ++R V + L F + + + N V Sbjct: 167 IELFLKEKGVNFVTDSTNLIDDVKRNKLRLNV----IPELRKMNPSFDNAVMCMANNVNE 222 Query: 237 LIPKYLTVHMRSIIAI 252 + + +I Sbjct: 223 ANKIIFSTLESAFSSI 238 >gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp. lyrata] Length = 664 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 79/310 (25%), Positives = 128/310 (41%), Gaps = 27/310 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCL 62 R + L I + VSGG DSM L + ++ +S G I AI VDH L Sbjct: 74 RMAMAGLKPHHRIALGVSGGPDSMALCVLTAKWKTEGLSCVNKSDGFIDGLVAIVVDHGL 133 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINA 119 R+ +KDE V S++ I + S W + +P+ G L AARE RY +IS Sbjct: 134 RQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYQMISNVCFRHQI 193 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRP 168 +++ AH DDQ E +R R G+ + I + + ++ + RP Sbjct: 194 EVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHIKNRSILLVRP 253 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKFQ 224 L +ED+ W EDP+N F R R+R + ++ L+ + + + Sbjct: 254 LLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLHSGNFKSELHAVISECR 313 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLP 282 R V+ LI + +TV + + + LN L + AA+ Q P Sbjct: 314 RTRSFVDKFCTDLISQTVTVTDKGYAILDLERLNPTEVKDICLSKYLAAVLQFISQRHRP 373 Query: 283 GYRSMERVML 292 + +++L Sbjct: 374 VRGNTSKLLL 383 >gi|301162414|emb|CBW21959.1| putative ATP-binding PP-loop protein [Bacteroides fragilis 638R] Length = 435 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64 IE + F + +LV +SGG+DS+ LL L S+ A + LR+ Sbjct: 10 IEKEKLFCLN----DKVLVTLSGGTDSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58 Query: 65 TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C L I H + +K + AARE RY + A+ Sbjct: 59 ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DD +ETV + R G+ + N I RP L RE+I ++ Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L + + D +N D + R ++R + + ++ D N + Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + LT I A+ Q+ + +LF +L Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264 >gi|188995854|ref|YP_001930106.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277] gi|226695545|sp|B2RMB4|TILS_PORG3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|188595534|dbj|BAG34509.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277] Length = 454 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 124/340 (36%), Gaps = 28/340 (8%) Query: 1 MFLSPIESVRFFVR--SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 M +S VR +R L + +LVA+SGG+DS+ LL L + + A Sbjct: 1 MKISLTNRVRTTIRERKLFREGNRLVLVALSGGADSVALLCVLREL-------GYETVAA 53 Query: 57 SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111 + LR + ++ +V +C L + + + + + AARE RY Sbjct: 54 HCNFHLRGVESDEDAAFVEGLCRDLDVPLHRIDFDTVRYARERSISIEMAARELRYEWFG 113 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 K + + AH DD ET+ + R G G+SG+C Y N I RP L Sbjct: 114 LLRKELAIEYVAVAHHADDNAETMVLNLCR-----GTGISGLCGM-PYKRNDGIVRPLLD 167 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R++I ++LL + I++ D SN D RF R VR + + + R + Sbjct: 168 ATRDEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNPSLQEALLRTRENLE 227 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 A H S I + T + L + V+ Sbjct: 228 GVAAFFSKATEDFHNTLRATASISIREVKETPAPFTLLYDLL----HPYGFNRDQIREVV 283 Query: 292 LFLKS--GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329 L + G S R++ +R + +P L Sbjct: 284 TSLDNPPGASFFSSSHRLLRERDRLTVLPLSPKMEVPELF 323 >gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b] gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B] gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b] gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B] Length = 430 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 13/271 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P+ GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYKLQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 + R R+R FV D L +F + + +L K + H + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK-IRYHKLLNGIVQ 248 Query: 254 QDILNIDSTLLFYLLRVSAAIC----GGQIS 280 + +++ L + G Q+ Sbjct: 249 VNAVDLSDFNCHQLSLYFNWLIDKEWGRQVY 279 >gi|258424455|ref|ZP_05687334.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635] gi|257845324|gb|EEV69359.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635] Length = 431 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASNEEARFLEAYCD 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q ++ ++L +L Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266 >gi|187735920|ref|YP_001878032.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC BAA-835] gi|187425972|gb|ACD05251.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 334 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 81/331 (24%), Positives = 126/331 (38%), Gaps = 24/331 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L +SGG DSM LL L A V+H LR A++E +V Sbjct: 15 LRSGRPVLAGISGGRDSMALLSLLS------GMPGCNLVACHVNHQLRPEAEEEEMFVLR 68 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L I + AAREAR A + A L+ AH +DQ Sbjct: 69 YAASLGIPCVRERVNVRSMAHTRGIAIEEAAREARQASFLKWAAGYPGALVALAHHRNDQ 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET + R G+ GM + L + RP L REDI S+L R+I W ED Sbjct: 129 QETALLHLCRGA----SGIHGMFPVSTWANGLTVVRPMLDFSREDITSYLEHRHIPWRED 184 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHM 246 SN + R +R + L+AL+ + + L ++ A++ + Sbjct: 185 SSNQSAEYTRNALRHEIIP-KLNALFQRDTSLPFSRACHLENQIRTALSQALDSMNLTDP 243 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305 + + + + +N+ L V + I ++ RVM L + S+ G Sbjct: 244 QGRLFLPK--INLLPAELRQC-AVHDYLRRQHIPDLTEDAVLRVMDILNTDGPSRTSLPG 300 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETT 336 + R+ L +T R + P +TT Sbjct: 301 GKLAVRKEKRLLVTDTPRPVNKAEQPPADTT 331 >gi|198283303|ref|YP_002219624.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665676|ref|YP_002425891.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247824|gb|ACH83417.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517889|gb|ACK78475.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 464 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 130/340 (38%), Gaps = 28/340 (8%) Query: 8 SVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +R ++ + P + VA SGG DS LL+AL S+ + A+ VDH Sbjct: 12 RLRTRLQGDLRPPRGRSLYVAYSGGGDSTALLVALLSL-------GYEIHALHVDHGWHP 64 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + R+ + L + +++ P G AR ARYAL A+ + T Sbjct: 65 DSAQWARFCQEQAKALGVPFTLLHLAADTPGEGPEDQARRARYAL--MAAQLRQGDWLFT 122 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A +DQ ETV ++ R GL+GM L + RP L R+ +R +L QR Sbjct: 123 AQHREDQAETVLLQLLRGTGV--AGLAGMPRQRPLGAGL-LVRPLLDVPRQVLRDYLEQR 179 Query: 185 NISWCEDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + + DP+N D R++RVR+RR ++++ + + + D + Sbjct: 180 QLPFLNDPANADMRYDRVRIRRILLPQLQELGWPHATISIARAADNLADMGEIATDWFDL 239 Query: 241 YLTVHMRSIIAISQDILNID------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + +S ++L ++ + LR +IS+PG +E + + Sbjct: 240 CWQQYRADHPGLSVEVLPLEYLHTLSVAAQRFFLRGWLQSL--RISVPGRERLEALRDAV 297 Query: 295 KSGKRG-CVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 G+ G + + L R Sbjct: 298 MRGRGGARIQWEGGQAWLQGGLLRAWPQPRVTAEKEWEAG 337 >gi|297180756|gb|ADI16963.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Sphingobacteriales bacterium HF0010_19H17] Length = 441 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 123/326 (37%), Gaps = 40/326 (12%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L ILVA+SGG DS+ LL +H A + LR E + + ++V Sbjct: 14 LGKDDKILVALSGGLDSVALLYLMH-------MSGFYVEAAHCNFNLRGEESDGDAQFVK 66 Query: 75 DVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++C+ L + V ++ + + AAR+ RY E I TAH DD Sbjct: 67 ELCAALGLPVHVKNFDTAAHANDFGVSIQMAARDLRYVWFEELRSKNGLAYIATAHHRDD 126 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET+ + R G GL GM I RP L R + ++ + ++ E Sbjct: 127 QVETLLINLSR-----GTGLKGMQGMKSLQN--KIIRPLLFTDRSALEVWMQKEKHAYRE 179 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN ++ R ++R V I L L L V V + + Sbjct: 180 DSSNASIKYSRNKLRHQVIPI-LKTLNP------SLSTTVQENVERFAGSETNLSFL-LE 231 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMERVMLFLKSGKRGC 301 Q+I+ ST ++L A L ++++E ++ +SGK Sbjct: 232 KERQNIVLQKSTEQHFILSALTAFPSPSSVLYYFISDSGFHDWKAIENIL-NSESGKIIY 290 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPT 327 ++ DR + + R + + Sbjct: 291 SQTHELLKDRE---VLVLREKKTVEQ 313 >gi|15923499|ref|NP_371033.1| hypothetical protein SAV0509 [Staphylococcus aureus subsp. aureus Mu50] gi|15926186|ref|NP_373719.1| hypothetical protein SA0467 [Staphylococcus aureus subsp. aureus N315] gi|148266968|ref|YP_001245911.1| hypothetical protein SaurJH9_0531 [Staphylococcus aureus subsp. aureus JH9] gi|150393014|ref|YP_001315689.1| hypothetical protein SaurJH1_0544 [Staphylococcus aureus subsp. aureus JH1] gi|156978837|ref|YP_001441096.1| hypothetical protein SAHV_0506 [Staphylococcus aureus subsp. aureus Mu3] gi|253315222|ref|ZP_04838435.1| hypothetical protein SauraC_03485 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005302|ref|ZP_05143903.2| hypothetical protein SauraM_02505 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794250|ref|ZP_05643229.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781] gi|258407233|ref|ZP_05680378.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763] gi|258420800|ref|ZP_05683736.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719] gi|258429626|ref|ZP_05688300.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299] gi|258446104|ref|ZP_05694265.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300] gi|258448012|ref|ZP_05696142.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224] gi|258453842|ref|ZP_05701815.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937] gi|269202129|ref|YP_003281398.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus ED98] gi|282895117|ref|ZP_06303337.1| cell cycle protein MesJ [Staphylococcus aureus A8117] gi|295407399|ref|ZP_06817196.1| cell cycle protein MesJ [Staphylococcus aureus A8819] gi|296276162|ref|ZP_06858669.1| hypothetical protein SauraMR_07424 [Staphylococcus aureus subsp. aureus MR1] gi|297246479|ref|ZP_06930319.1| cell cycle protein MesJ [Staphylococcus aureus A8796] gi|61216721|sp|Q99W94|TILS_STAAM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217307|sp|Q7A7A6|TILS_STAAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13700399|dbj|BAB41697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246277|dbj|BAB56671.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740037|gb|ABQ48335.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149945466|gb|ABR51402.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156720972|dbj|BAF77389.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788222|gb|EEV26562.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781] gi|257841191|gb|EEV65640.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763] gi|257843192|gb|EEV67605.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719] gi|257849685|gb|EEV73652.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299] gi|257855081|gb|EEV78023.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300] gi|257858702|gb|EEV81575.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224] gi|257864013|gb|EEV86768.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937] gi|262074419|gb|ACY10392.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus ED98] gi|282762535|gb|EFC02675.1| cell cycle protein MesJ [Staphylococcus aureus A8117] gi|285816208|gb|ADC36695.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus 04-02981] gi|294967756|gb|EFG43788.1| cell cycle protein MesJ [Staphylococcus aureus A8819] gi|297176666|gb|EFH35928.1| cell cycle protein MesJ [Staphylococcus aureus A8796] gi|312829004|emb|CBX33846.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128637|gb|EFT84640.1| hypothetical protein CGSSa03_01650 [Staphylococcus aureus subsp. aureus CGS03] gi|329725061|gb|EGG61556.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21172] Length = 431 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYIRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|298693839|gb|ADI97061.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 431 Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|330964160|gb|EGH64420.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 441 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 107/306 (34%), Gaps = 20/306 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 26 VGFSGGLDSTVLLHLLAELARRESLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALDVA 83 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V K +P L AAR+ARY ++ + +++T DDQ ET+ R R Sbjct: 84 FELVRVKV-EPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ Q+ + W EDPSN + +F R Sbjct: 141 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARQQGLRWVEDPSNDNQQFSRNF 197 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 198 LRSQVLPLLTSRWPQATASLARTAGHLAEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 257 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L + R+S A + + R+ + R + + R Sbjct: 258 LGPIARLSGARQRNVMR-HWLAPLTRLPDTDHWAGWEALRDAAQDARPLWRLADGALHRA 316 Query: 313 ANFLWI 318 +W Sbjct: 317 QGCIWW 322 >gi|115352161|ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] gi|115282149|gb|ABI87666.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD] Length = 473 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 143/403 (35%), Gaps = 31/403 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALADLPADARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A V + RL + + G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAALWV 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RPFLR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 ++W +D SN D R+ R +R V L L + F+D + A L+ Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPTLAMHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + L+ D+ + F LLR G S +M R + Sbjct: 244 AELDFAGAARDDGRALSRDALVAFDDTRGANLLRFWMRRLGLPGASAGRLANMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348 V + + ++ P T + PE + WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSADPADDGTGMPRPESSLAWDGQEVWHVPAWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + + +A +P + + A + ++ GG+ L Sbjct: 364 GTFVF----APAEAGSDGAVPDALLRGATLVVRARAGGERLRT 402 >gi|329731094|gb|EGG67466.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus 21193] Length = 431 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIHRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|89256102|ref|YP_513464.1| PP-loop family protein [Francisella tularensis subsp. holarctica LVS] gi|115314576|ref|YP_763299.1| PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156502120|ref|YP_001428185.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010788|ref|ZP_02275719.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella tularensis subsp. holarctica FSC200] gi|290954514|ref|ZP_06559135.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica URFT1] gi|295312030|ref|ZP_06802845.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica URFT1] gi|122325399|sp|Q0BMM2|TILS_FRATO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|122500940|sp|Q2A488|TILS_FRATH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|166988058|sp|A7NB76|TILS_FRATF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|89143933|emb|CAJ79152.1| PP-loop family protein [Francisella tularensis subsp. holarctica LVS] gi|115129475|gb|ABI82662.1| probable PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156252723|gb|ABU61229.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 398 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+HI++ SGG DS LL + I AI ++H L + + C Sbjct: 16 SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S A A + R A + + + L++ H DDQ ET + Sbjct: 69 QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G+ + + + RP L+ + DI F NIS+ D SN D Sbjct: 129 QAIRGSGLAGLASIPHYKELHHGG---VLRPLLKYSKIDIEGFAKLNNISYIYDDSNEDI 185 Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 ++ R +R + I + + + ++ + NN + L+ + L + I Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245 Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278 +++ +D + LL + Q Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269 >gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1] gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1] Length = 430 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 108/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + I+ + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCQQLSL 264 >gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang] gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str. Zhang] Length = 436 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 126/332 (37%), Gaps = 17/332 (5%) Query: 10 RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F R +LVAVSGG DSM LL + + DH LR ++ Sbjct: 4 KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E +V +L++ W+ S Q AAAR+ARYA ++ A +A ++MTAH Sbjct: 58 EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET+ R R L G+ + + RP L + IRS+ Q N+ + Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SN D + R ++R V + Q ++ +A+ + R Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234 Query: 249 IIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + + + + + LL P + V+ L K +G Sbjct: 235 QVDDATFNWRVASPQPEAVQRLLLKKILQQWQPNVDPQL--LSPVLASLSGTKERRFDLG 292 Query: 306 R--VVIDRRANFLWITRAVRNLPTLILYPEET 335 + + + +TR P ++ Sbjct: 293 GGISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324 >gi|256819419|ref|YP_003140698.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271] gi|256581002|gb|ACU92137.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271] Length = 431 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 71/358 (19%), Positives = 136/358 (37%), Gaps = 44/358 (12%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIA 83 A+SGG DS+ L L++ I+ + LR + D+ +V + L + Sbjct: 16 AISGGIDSVVLTHLLYT-------HGIELLLAHCNFQLRGRESDDDEAFVRTFAAELSVP 68 Query: 84 HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V + S Q AARE RY E A T I TAH +D LET ++ Sbjct: 69 LEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLETFFINL 128 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G+ + + I RP L+ R+ I + + + W ED SN +++ Sbjct: 129 SRGSGLEGL-------LGIPEEKDTIIRPLLQFSRQQIYEYAQAKRLKWREDSSNETNKY 181 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL------TVHMRSIIAIS 253 R +R + ++ F + ++ + A I Y+ + I I Sbjct: 182 VRNVIRHDIIPKLALVHPNYLENFNQTQEYLHQS-ARFIDFYIGKLKETCFEGHNPIQID 240 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + L L F L ++ G + + ++ ++L ++GK+ ++ + Sbjct: 241 IEKLQAVPELDFVLHKLFYPYGFGNV-----KDLKNLLLNAEAGKQVLSPTH--ILIKDN 293 Query: 314 NFLWIT-RAVRNLPTLILYPEETTVWD----------GRYQFQNLSDSLIQIGPQSYR 360 LW+ + +L++ + V+D G+ + +N + I + + Sbjct: 294 TCLWLKPNEAKRSLSLLISEDMAEVYDPVHLRFEFIEGKVKVKNPIPTEIYVDADKLQ 351 >gi|49482736|ref|YP_039960.1| hypothetical protein SAR0510 [Staphylococcus aureus subsp. aureus MRSA252] gi|257424621|ref|ZP_05601049.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257427287|ref|ZP_05603688.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429924|ref|ZP_05606310.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 68-397] gi|257432626|ref|ZP_05608988.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus E1410] gi|257435530|ref|ZP_05611580.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M876] gi|282903095|ref|ZP_06310987.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus C160] gi|282904884|ref|ZP_06312744.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus Btn1260] gi|282907831|ref|ZP_06315669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910147|ref|ZP_06317953.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WBG10049] gi|282913337|ref|ZP_06321128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M899] gi|282918290|ref|ZP_06326030.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427] gi|282923041|ref|ZP_06330727.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101] gi|283957299|ref|ZP_06374757.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus A017934/97] gi|293500386|ref|ZP_06666238.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 58-424] gi|293509325|ref|ZP_06668041.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809] gi|293515913|ref|ZP_06670603.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M1015] gi|295427043|ref|ZP_06819680.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591580|ref|ZP_06950217.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus MN8] gi|61217256|sp|Q6GJG2|TILS_STAAR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|49240865|emb|CAG39532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272648|gb|EEV04768.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275938|gb|EEV07406.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279440|gb|EEV10035.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 68-397] gi|257282491|gb|EEV12624.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus E1410] gi|257285167|gb|EEV15284.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M876] gi|282314560|gb|EFB44947.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101] gi|282317856|gb|EFB48225.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427] gi|282322808|gb|EFB53128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M899] gi|282325995|gb|EFB56301.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WBG10049] gi|282328307|gb|EFB58582.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Staphylococcus aureus subsp. aureus WW2703/97] gi|282332001|gb|EFB61510.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus Btn1260] gi|282596521|gb|EFC01481.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus C160] gi|283791223|gb|EFC30033.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus aureus subsp. aureus A017934/97] gi|290921321|gb|EFD98379.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus M1015] gi|291096346|gb|EFE26606.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus 58-424] gi|291467870|gb|EFF10380.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809] gi|295129046|gb|EFG58675.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575449|gb|EFH94166.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus MN8] gi|312436401|gb|ADQ75472.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH60] gi|315193871|gb|EFU24265.1| hypothetical protein CGSSa00_12597 [Staphylococcus aureus subsp. aureus CGS00] Length = 431 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRNGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|170723226|ref|YP_001750914.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619] gi|169761229|gb|ACA74545.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619] Length = 426 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 102/305 (33%), Gaps = 18/305 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L R AI + H L+ A + + VC RL I Sbjct: 15 IAFSGGLDSTVLLHWLADYA--RIHATPPLHAIHIHHGLQPAADAWPGHCTAVCERLGIE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V+ + L AAR+ARYA ++ T DDQ ET+ R R Sbjct: 73 LTVIHVQVPA-GASLEQAARDARYAAFETVLGA--GDVLFTGQHCDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R + + + W EDPSN D F R Sbjct: 130 GLRGLAAMPQQRPL---GRGHVVRPLLNVSRAQLHEYAQTHGLIWAEDPSNADTAFARNF 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260 +R V + + + A + L L V + AI + ++D Sbjct: 187 LRAEVFPLLQKRWPKASQALARGADHLGEALGLLDELAQADLAVARKGAPAIWSGLDSLD 246 Query: 261 STLLFYLL-----RVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L L + LP R + + + ++R Sbjct: 247 LASLAALSPARQRNALQYWLSLRTRLPDTRHWAGWAALRDAAVDSQPAWQLTDGKLERSH 306 Query: 314 NFLWI 318 +W Sbjct: 307 GRIWW 311 >gi|298373197|ref|ZP_06983187.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str. F0058] gi|298276101|gb|EFI17652.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str. F0058] Length = 445 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 32/335 (9%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ + + F+ L +LVAVSGG DS+ LL L + + + Sbjct: 1 MTFLRKLNNFINKNNLLSDNRKLLVAVSGGIDSVVLLDMLVRC-------GYRCAVAHCN 53 Query: 60 HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 LR + ++ ++V + + I V + + AAR+ RY Sbjct: 54 FHLRGNESDNDEQFVRALAQKYDIPLFVRQFDTIQTAKNDNISIEMAARKLRYDWFEVLV 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 KT + + AH +D ETV + R +G+ + + RP L R Sbjct: 114 KTNDFQSVAVAHHKNDNAETVLLNMARGSGLQGLA-------GIRARRGSVVRPLLCFDR 166 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231 E+I + NI C D +NTD F+R R+R + L + ++ +F + + N Sbjct: 167 EEIELYAKLNNIEHCTDRTNTDTEFQRNRIRHNIIPEFLAINNNFVEQIDRFAAIMREYN 226 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMER 289 + + H I+ ID LL R+ I+LP ++ Sbjct: 227 D----FFDYEIKKHKTDIVNYQPHKTEIDIPLLLEKRFARIILFDIIKDINLP-VSILDE 281 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 + + S ++I I + + L I V N Sbjct: 282 IYKLIHSQTGKYITIYNKRIIKNRDKLLIVDEVDN 316 >gi|319891462|ref|YP_004148337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317161158|gb|ADV04701.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius HKU10-03] Length = 429 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 18/247 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++ HI+VAVS G DSM LL H +L D + + + + V H LRE ++ E ++ Sbjct: 3 QNWKATDHIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFI 59 Query: 74 SDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C + I + S + ARE RY ++A ++TAH DD Sbjct: 60 QHYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDD 119 Query: 131 QLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 Q+ET++ R + + +G+S TI + RP L + IR++ Q ++ + Sbjct: 120 QVETIFYRLFTGKSTRSSLGMS----TIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYF 175 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-------KVNNAVAMLIPKYL 242 ED SN ++ + R +R + LK ++ L+ + + V I +++ Sbjct: 176 EDTSNANNTYVRNDIRNRILPQIDENAQLKSQQLLKLKAWYDEAFMLMQHEVDNFIERFV 235 Query: 243 TVHMRSI 249 T + S Sbjct: 236 TTNAHSF 242 >gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum centenum SW] gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum centenum SW] Length = 453 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 24/386 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V VSGG DS+ L++ + R A++VDH LR + E V + Sbjct: 33 LAVGVSGGRDSLALVLLADAWARARGG---SVLALTVDHALRPESAAEAAQVGAWMAARG 89 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I H+V+ W+ KP G+ AAR ARYAL+ + A ++ H +DQ ETV +R+ R Sbjct: 90 IRHAVLRWEGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQAETVLLRAAR 149 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G L+GM L + RP L R + + W +DPSN DRF R Sbjct: 150 SSGPDG--LAGMAAVRELA-GLRLLRPLLDIPRVRLAATCEALGQPWLDDPSNLSDRFAR 206 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NID 260 R+RR + + R +++A A ++ ++ ++ L + Sbjct: 207 GRLRRA-GAAGTEEPWQRALAAGRTRAALDDAAAAVLAGQAALYPEGWGEVAAAALCDPP 265 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK---------------SGKRGCVSIG 305 + +L + GG P ++R++ L+ + ++ Sbjct: 266 EDVARRVLLRLLQVVGGAALPPRSARLDRLLAALRRSGAAGSGGGGDKEGTALSRGATLH 325 Query: 306 RVVIDRRANFLWITRAVRNL-PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 ++ I R R + P + + + +WDGR++ + +G A + Sbjct: 326 GCLVVPSRAGWRILREPRAVSPPVEVVSGASVLWDGRFRIAWNGAGSVTVGALGEGAAAL 385 Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLL 390 PS P + ++P+ +L Sbjct: 386 PSDGSPRLPALVRRTLPALRRDGRVL 411 >gi|325473901|gb|EGC77089.1| hypothetical protein HMPREF9353_01437 [Treponema denticola F0402] Length = 454 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 35/343 (10%) Query: 1 MFLSPIESVRFFVRSL----VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 M S ++ V SL P +L+AVSGG+DSM +L A + SD + + + Sbjct: 1 MAKSFLKDVLLGFSSLCDRSAAPLRLLLAVSGGADSMAMLSAFLELKSDINA---EIFVL 57 Query: 57 SVDHCLRETAK--DEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYA 108 +V+H +R + + ++V + C I + V + +TG+ AAR RY Sbjct: 58 TVNHNIRPEKETLGDAQFVLNFCKNKCPCILAEIPKNTVFDEAGNRKTGIEDAARFLRYN 117 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A ++NA I+TAH +D ETV MR + + L G+ RP Sbjct: 118 EFEKAADSLNADYILTAHNKNDNYETVLMRLFQGSEPE--ALMGIS-----PRRGRFIRP 170 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L R +I +L ++NI W ED +N + + R +VR + + L + + D + Sbjct: 171 MLNISRSEIEEYLKEKNIPWREDATNLETSYLRNKVRHNLLPV-LSICFDGWQSGLDKSL 229 Query: 229 KVNNAVAML-IPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQI 279 A I Y T ++ ++ L+++ L L+ + G+ Sbjct: 230 AKIKAQNDFVIASYKTKKEEWVLDKKEECCRCKFLFFLSLEEALKLKFLQEGLILLKGKR 289 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 +P Y + +M S + + G I + + + + +AV Sbjct: 290 RIP-YSVFDDLMKL--SDTKKIIFSGGFCIKKEGDEVLLFKAV 329 >gi|149183227|ref|ZP_01861672.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1] gi|148849060|gb|EDL63265.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1] Length = 467 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 17/253 (6%) Query: 2 FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 L+ V F+ +L+ IL AVSGG DS+ LL L+ R+ +K +A+ V Sbjct: 1 MLTYERKVTAFITKHNLIQDGDSILAAVSGGPDSLSLLHFLNKY---RNLWNVKVAAVCV 57 Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113 DH R E + +E+ +V C + I V + GL AR ARY L + Sbjct: 58 DHMFRGEQSYEELLFVKKTCEEMDIPFFGERLNVQGMLDDQKAGLQEGARNARYHLFARL 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 K T + H DDQ+ET+ M+ R + G G+ + I RP L Sbjct: 118 IKDEGFTKLAFGHHGDDQVETILMQLTRGSS--GRAKIGIPVQRDF-YGARIIRPLLCLS 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKV 230 +E+I + + + DPSN + R R R+ V + ++LK ++F + + Sbjct: 175 KEEILKYCSETGLQPKFDPSNEKKDYTRNRFRQEVLPFLKGENPLVHLKFQQFSEEAAED 234 Query: 231 NNAVAMLIPKYLT 243 + + L + L Sbjct: 235 ESFLRSLAEEKLE 247 >gi|323465368|gb|ADX77521.1| tRNA(Ile)-lysidine synthetase, putative [Staphylococcus pseudintermedius ED99] Length = 429 Score = 202 bits (515), Expect = 7e-50, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 18/247 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++ HI+VAVS G DSM LL H +L D + + + + V H LRE ++ E ++ Sbjct: 3 QNWKATDHIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFI 59 Query: 74 SDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C + I + S + ARE RY ++A ++TAH DD Sbjct: 60 QHYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDD 119 Query: 131 QLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 Q+ETV+ R + + +G+S TI + RP L + IR++ Q ++ + Sbjct: 120 QVETVFYRLFTGKSTRSSLGMS----TIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYF 175 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-------KVNNAVAMLIPKYL 242 ED SN + + R +R + LK ++ L+ + + V I +++ Sbjct: 176 EDTSNASNTYVRNDIRNRILPQIDENAQLKSQQLLKLKAWYDEAFMLMQHEVDNFIERFV 235 Query: 243 TVHMRSI 249 T + S Sbjct: 236 TTNAHSF 242 >gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624] gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624] Length = 466 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 19/310 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + L+ SGG DSM LL ++ + + AI +DH L+E + + + Sbjct: 24 AQEFSENSSFLIGCSGGMDSMLLLHLMNQIFPQK------IRAIYIDHQLQEQSAEWGKL 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+ + L I++ + + S L A AR+ARY +H + +++ AH DQ Sbjct: 78 VASQATSLNISYIIQKVQISD--GNLEAQARQARYQAYQQHLQQN--EILLLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET +R G+ D Y N+ I RPFL RE I S+ Q + + +DP Sbjct: 134 ETAILRLLSGTGVDGLAAMQAID---YRENMTIWRPFLDLTREQIASWAAQLEVKYIDDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N D ++RV R + L + KM++ + + ++ + L + + Sbjct: 191 MNYDTHYDRVWCREELWP-FLSKRFPKMQQALSRTSYLMQDASEILEEVLKNDWQYSGSA 249 Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 L S L F R +SA + G P + +ER+ ++ KS + + + Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGDGQYRPAFEMVERLKKEVIDSKSDAQAALHWNQF 309 Query: 308 VIDRRANFLW 317 R N L+ Sbjct: 310 YYVRYQNILY 319 >gi|34541632|ref|NP_906111.1| hypothetical protein PG2046 [Porphyromonas gingivalis W83] gi|61216584|sp|Q7MTC4|TILS_PORGI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34397950|gb|AAQ67010.1| conserved hypothetical protein [Porphyromonas gingivalis W83] Length = 454 Score = 202 bits (515), Expect = 8e-50, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 116/325 (35%), Gaps = 26/325 (8%) Query: 1 MFLSPIESVRFFVR--SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 M +S VR +R L +LVA+SGG+DS+ LL L + + A Sbjct: 1 MKISLTNRVRTTIRERKLFREGDRLVLVALSGGADSVALLCVLREL-------GYETVAA 53 Query: 57 SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111 + LR + ++ +V +C L + + + + + AARE RY Sbjct: 54 HCNFHLRGVESDEDAAFVERLCRDLDVPLHRIDFDTVRYARERSISIEMAARELRYEWFG 113 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + K + + AH DD ET+ + R G G+SG+C Y N I RP L Sbjct: 114 QLRKELAIEYVAVAHHADDNAETMVLNLCR-----GTGISGLCGM-PYKRNDGIVRPLLD 167 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R++I ++LL + I++ D SN D RF R VR + + + R + Sbjct: 168 ATRDEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNPSLQEALLRTRENLE 227 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 A H S I + T + L + V Sbjct: 228 GVAAFYSKATEDFHNTLRATSSISIREVKETPAPFTLLYDLL----HPYGFNRDQIREVA 283 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFL 316 L + + R + L Sbjct: 284 TSLDNPPGASFFSSSHRLLRERDRL 308 >gi|319760425|ref|YP_004124363.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str. BVAF] gi|318039139|gb|ADV33689.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str. BVAF] Length = 535 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 135/319 (42%), Gaps = 25/319 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFG------KIKFSAISVDHCLRETAKDEVRYV 73 ++L++ SGG DS LL L ++ + + A+ V H L E A D + Sbjct: 33 RNLLLSYSGGLDSTVLLDILTTLTKNSQIWMKSRKFPLFLKAVYVHHGLNEKADDWANHC 92 Query: 74 SDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C + +++ + K ++ + + AR+ RY ++ ++ +++TAH DD Sbjct: 93 AHQCQIRDVPFNILYIQYFNFCKKRSNVESLARKLRYQVLYDYLNVNVEEILLTAHHMDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISW 188 QLETV + +R GLSG+ + YD + RP L C R + + +R + W Sbjct: 153 QLETVLLALKRGSGP--AGLSGISREVWLNYDYRYRVLRPLLGCSRGQLEEYAHRRKLIW 210 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D +N + RF+R +R V + L+ + K ++ L+ + L + + Sbjct: 211 INDDTNVNIRFDRNFLRIQVIPL-LNKRWPAFNKVVTRTAQLCRNQENLLRELLLETLNT 269 Query: 249 IIAISQDILNID-----STLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300 ++ ++ + + + LLR +P YR ++ + K + Sbjct: 270 LVDVNGALFFLPLLKYSHSKRQALLRFWLRNF--FKDMPSYRLLQCIWTEVALSKVDSKP 327 Query: 301 CVSIG-RVVIDRRANFLWI 318 +++G + R L+I Sbjct: 328 VLNLGKNHICCRFRKKLYI 346 >gi|282915827|ref|ZP_06323595.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus D139] gi|283768944|ref|ZP_06341853.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus H19] gi|282320318|gb|EFB50660.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus D139] gi|283461125|gb|EFC08211.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus H19] Length = 431 Score = 202 bits (514), Expect = 8e-50, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKDYQIYRPLLAVSKKEIKQFQERNHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|260911822|ref|ZP_05918389.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella sp. oral taxon 472 str. F0295] gi|260634033|gb|EEX52156.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella sp. oral taxon 472 str. F0295] Length = 461 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 47/358 (13%) Query: 3 LSPIES-VRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 + IE VR ++ L+ P+ LVA+SGG+DS+ L L + K A+ Sbjct: 1 MKKIEREVRQYIDRHDLLSPSGRYLVALSGGADSVALFRILLRL-------DYKVEAVHC 53 Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEH 113 + LR E + + + ++C + V + ++ + + AARE RY + Sbjct: 54 NFKLRGEESFRDEIFCENLCREHGVTFHTVHFDTTEYAALHKLSIEMAARELRYNHFEKL 113 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 +N I AH DD +ET+ + R G GLSG+ N ++ RP L Sbjct: 114 RNDLNMDGICVAHHKDDNVETMLINLVR-----GTGLSGLTGMTP--QNGYVLRPLLAVS 166 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDL 226 D+ +L + N + D +N F R ++R + + +++ + Sbjct: 167 HTDLLEYLQELNQPYVTDSTNLATDFTRNKIRLTLVPLLEELNPAATDNIAKTIERLAEA 226 Query: 227 RVKVNNAVAMLIPKYLTVH---MRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQIS 280 N+A+ + V R + IS L +LF L+ Sbjct: 227 EKVFNHALKKHAKDVIVVEEETPRWRLGISIGKLQQTPSPEYVLFQLIHPLG-------F 279 Query: 281 LPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 P +E++ L ++GK S +VIDR+ + + L + PEE T Sbjct: 280 TP--AQIEQIAQSLDQQTGKLWQSSKFTLVIDRKTLLIEESITADELARTMRIPEEGT 335 >gi|322420025|ref|YP_004199248.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18] gi|320126412|gb|ADW13972.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18] Length = 458 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 144/396 (36%), Gaps = 42/396 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++VAVSGG+DS+ LL L + +R + ++HCLR + + ++V+D+ +R Sbjct: 20 VVVAVSGGADSVALLDILTRLDEER----LNLIVAHLNHCLRGAESDADEQFVADLAARY 75 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + + L A R ARYA E A+ A I AH DDQ ETV Sbjct: 76 QLPFLAIRVDVASLAAADGLSLEDAGRRARYAFFHEVARRRGAGSITVAHHLDDQAETVL 135 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R R G GLS M + + RP L+ R ++ +L R +SW D +N D Sbjct: 136 IRLLRGAG--GAGLSAMAAV----GDNLVKRPLLQVSRCELEGYLNNRGLSWRTDSTNAD 189 Query: 197 DRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 R +R + L + +++ + +V I Sbjct: 190 TTILRNSIRHELIPALRKYNPRITERLAATAEILASDEELLDHLTGNAFARLASVEGDGI 249 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV--SIGRV 307 + +L L L R S G + +E + S + G + Sbjct: 250 VFGVGALLQEHRGLRLRLYRRSLREQRGDLMRIALTHLEAIDRLASSSRPNASLKLPGEL 309 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPS 366 ++R + L T A+ + R++ + ++ + VP Sbjct: 310 RVERCYDRLRFTCALPPVAE-------------RWEQVIPGEGSHRLPTGATLSVLRVPP 356 Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA----PFSRFMT 398 + ++ + + P LA P RF Sbjct: 357 PETLATGSKRVTYLSADAAPLPWLARSFTPGDRFTP 392 >gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners DSM 13335] gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1] gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners DSM 13335] Length = 430 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + II + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLSGIIQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCHQLSL 264 >gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a] gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a] Length = 430 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 108/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + I+ + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCQQLSL 264 >gi|169797140|ref|YP_001714933.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE] gi|169150067|emb|CAM87961.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE] Length = 467 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 19/310 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + L+ SGG DSM LL + + + AI +DH L++ + + Sbjct: 24 AQEFSEKSSFLIGCSGGMDSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEV 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+ + L I + + + + L A AR+ARY +H + +++ AH DQ Sbjct: 78 VATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R G+ D Y ++ I RPFL RE I + Q + + +DP Sbjct: 134 ETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N D+ ++RV R + L + + KM++ + + ++ + L + + Sbjct: 191 MNYDNHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSA 249 Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 L S L F R +SA + G P + +ER+ ++ KS + + + Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQF 309 Query: 308 VIDRRANFLW 317 R N L+ Sbjct: 310 YYVRYQNILY 319 >gi|78223098|ref|YP_384845.1| tRNA(Ile)-lysidine synthetase-like [Geobacter metallireducens GS-15] gi|78194353|gb|ABB32120.1| tRNA(Ile)-lysidine synthetase-like protein [Geobacter metallireducens GS-15] Length = 468 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 117/314 (37%), Gaps = 26/314 (8%) Query: 2 FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 S V F SL P ++VAVSGG+DS+ LL L S+ R + + Sbjct: 1 MRSVHAKVLAFSTEHSLFTPGDTVVVAVSGGADSVALLDILISLSDLR----LNLVVAHL 56 Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113 +H LR + + R+V+D+ + + + V + + + L A R ARY Sbjct: 57 NHSLRGAESDGDERFVADLAASRGLPFAGEKADVRALSIRERLSLEDAGRRARYEFFDRV 116 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A A + AH DDQ ET+ +R R G+ + RP L Sbjct: 117 ATQYGARSVALAHHADDQAETLLLRLLRGAGVTGLSAM------APRRDGRFVRPLLTLS 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDL 226 R +I +L R + + D SN D F R R+R + L + Sbjct: 171 RSEIEGYLHGRGLRFRIDSSNADTAFLRNRIRHELIPHLVRFNPEISRRLAVTADLLAVD 230 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + + + H + + +L + + + R + A+ G + Y+ Sbjct: 231 EEVLETVADEALKRTAREHSGEGVILDVAGLLREPRGVRYRIYRRAVALAMGTLRGLSYK 290 Query: 286 SMERVMLFLKSGKR 299 + ++ ++S K Sbjct: 291 HVLQIDGLVRSPKP 304 >gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d] gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d] Length = 430 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ Sbjct: 15 LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + I+ + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCQQLSL 264 >gi|332365105|gb|EGJ42870.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK355] Length = 425 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 132/348 (37%), Gaps = 30/348 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYF----QGHRKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGKFS----ETAARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPE-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPNLEKENPQFKDSLRYLGKEIEDWQAAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SYLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345 ++ +V D + + I+R IL E + G Y+F Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327 >gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G] gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G] Length = 430 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R + + D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLVYIVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + II + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIIQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCHQLSL 264 >gi|172061025|ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] gi|171993542|gb|ACB64461.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6] Length = 468 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 143/403 (35%), Gaps = 31/403 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALADLPADARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A V + RL + + G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAALWV 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RPFLR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 ++W +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPALAMHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + L+ ++ + F LLR G S +M R + Sbjct: 244 AELDFAGAARDDGRALSREALVAFDDTRGANLLRFWMRRLGLPGASAGRLANMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348 V + + ++ P T + PE + WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSADPADDGTGMPRPEASLAWDGQEVWHVPAWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + +A +P + + A + ++ GG+ L Sbjct: 364 GTFVF----GPAEAGSDGAVPEALLRGATLVVRARAGGERLRT 402 >gi|328478101|gb|EGF47969.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus MTCC 5462] Length = 402 Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 133/324 (41%), Gaps = 30/324 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DSM LL + + DH LR ++ E +V Sbjct: 13 PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLET+ Sbjct: 67 ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETILF 126 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R L G+ + + RP L ++DIR++ + + +C+DPSN D Sbjct: 127 RLGRSGDP--AALVGIRPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250 R+ R ++R V ++ Q + + VA+ + + R I Sbjct: 184 RYARNQLRHQVIPAFKKQNPELLRHVQRFTTEQSGLVALAQMQLSELQQRLRINSVTIDW 243 Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVV 308 A + I LL LLR + +P ++ LK + +G V Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMP-------ILKSLKDTRERRFDLGAGVT 296 Query: 309 IDRRANFLWITRAVRNLPTLILYP 332 I +A + V+ +P L P Sbjct: 297 IAVQAAKI-----VKLVPKPKLAP 315 >gi|220934352|ref|YP_002513251.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995662|gb|ACL72264.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 419 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 119/343 (34%), Gaps = 22/343 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + +R +R L + ++VA SGG DS LL A ++ R G + AI V H L A Sbjct: 6 DVLRDALRHLPPASRLIVAFSGGLDSHVLLHAAAAL---RGVGFPELRAIHVHHGLNPRA 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V + VC L + V+ S P G A R + A + ++TAH Sbjct: 63 DAWVEHCGQVCEDLGVELRVIHVDAS-PADGESPEAAARRVRYAALEAALLPGDGLLTAH 121 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DQ ET+ ++ R G+ + W RP L RE + + Sbjct: 122 HQRDQAETLLLQLLRGSGPAGLAAMPRWQPL---GAGWHGRPLLEVSREVLEGHARDHGL 178 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +W ED SN D RF+R +R + + + ++ +L Sbjct: 179 AWIEDDSNRDTRFDRNLLRERIMPLLRERWPSLDQTLARAAGHQAESLGLLGDLARQDLE 238 Query: 247 RSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298 S + + +LR G + +P ++ V+ L Sbjct: 239 ALRGDFSGTLSVAALKTLRPARQRNVLRFWLMEKG--LPMPSQARLQSVLDDVLAAGPDT 296 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341 V+ I R + L +P P + WDGR Sbjct: 297 TPLVAWPGGEIRRYRDAL-----HAMVPLGDHDPGQCFKWDGR 334 >gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 321 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 18/267 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I+++VSGG DSM +L + I F A++ +H LR+ + E V ++ Sbjct: 18 IPGDKIILSVSGGMDSMCMLHLFWRLAKKM---DIVFLAVNFNHNLRKESVKEAETVKNL 74 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + I + V + K + A R RY + +K I TAH +D Sbjct: 75 SAEFGIDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAHNANDNA 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R +G+ + N+ + RP L +R+ I ++ + +C D Sbjct: 135 ETVLMRLLRGSGN----FAGIPQKRKINRNIVVIRPLLPVKRKFIEEYVRNHKLPFCTDK 190 Query: 193 SNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 SN D + R ++R + + + ++ + A + K + Sbjct: 191 SNFSDIYTRNKIRLSLMPVFEKINPMAVEHIFALSCIQSRENAYLEEVSAKFLKKCVKKQ 250 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSA 272 I+ + L + T+ F +L+ Sbjct: 251 KNQILLDLKTFLRYNKTIQFRILKNLL 277 >gi|169634324|ref|YP_001708060.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii SDF] gi|260556042|ref|ZP_05828261.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606] gi|169153116|emb|CAP02190.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii] gi|260410097|gb|EEX03396.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606] Length = 467 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 19/310 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + L+ SGG DSM LL + + + AI +DH L++ + + Sbjct: 24 AQEFSEKSSFLIGCSGGMDSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEV 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+ + L I + + + + L A AR+ARY +H + +++ AH DQ Sbjct: 78 VATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R G+ D Y ++ I RPFL RE I + Q + + +DP Sbjct: 134 ETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N D+ ++RV R + L + + KM++ + + ++ + L + + Sbjct: 191 MNYDNHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSA 249 Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307 L S L F R +SA + G P + +ER+ ++ KS + + + Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQF 309 Query: 308 VIDRRANFLW 317 R N L+ Sbjct: 310 YYVRYQNILY 319 >gi|291535600|emb|CBL08712.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Roseburia intestinalis M50/1] Length = 501 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 118/341 (34%), Gaps = 23/341 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + ++V +SGG+DS+ L +L R AI V+H +R E ++ + + Sbjct: 13 KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123 V ++C + I + G+ AAR RY + A+ + I Sbjct: 70 VEELCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH +D ETV + R GM GM + ++ I RP L R I +L + Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187 Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + D +N D + R R+R + + + + Q + Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + + + + + ++ G G ++ V ++ Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307 Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 +++ ++ R + + R+ + + E+ Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRSGTHKAGTGTWQEKGG 348 >gi|21232029|ref|NP_637946.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767844|ref|YP_242606.1| cell cycle protein [Xanthomonas campestris pv. campestris str. 8004] gi|61217383|sp|Q8P7L3|TILS_XANCP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|81306178|sp|Q4UWI7|TILS_XANC8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21113767|gb|AAM41870.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573176|gb|AAY48586.1| cell cycle protein [Xanthomonas campestris pv. campestris str. 8004] Length = 435 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 82/353 (23%), Positives = 127/353 (35%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 PA +LVA SGG DS LL AL + R G A+ V H L A + C Sbjct: 14 PPAPVLVAYSGGMDSAVLLHALAATDGYREAG---LRAVHVHHGLHADADAWALHCQQQC 70 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L IA VV + ++ + AA A + AH DDQ ET + Sbjct: 71 ADLGIALQVVRVQVARDSGSGLEAAARAARHAAFAATLAAG-EWLALAHHRDDQAETFLL 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R G L+ M + + RP L R D+ ++ + W +DPSNTD Sbjct: 130 RALRASGPDG--LAAMRPQRPFGPG-TLWRPLLGHARADLAAYAQAHAVRWIDDPSNTDP 186 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM---RSIIAISQ 254 + ER +R V L +A +L + + S A+ Sbjct: 187 QHERNFLRTQVLPALQQRWPLAADALARSAQLCGDASTLLHDDDVNLLPTVCNSAGALEL 246 Query: 255 DILNIDSTLLF-YLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L S LLR A + G ++ER + + ++ C + + I R Sbjct: 247 QPLRSHSPARRARLLRAWVAAAHAPPLPAQGVHALEREIATTQPDRQTCFAWQQTEIRRW 306 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ A P + W+G + +Q+ + + P Sbjct: 307 RQQLYLLSARATWPA-----QWQAEWNGDSTLLLPDGAQLQLRGTPGLRFEQP 354 >gi|240144373|ref|ZP_04742974.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82] gi|257203624|gb|EEV01909.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82] Length = 501 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 117/341 (34%), Gaps = 23/341 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + ++V +SGG+DS+ L +L R AI V+H +R E ++ + + Sbjct: 13 KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123 V ++C + I + G+ AAR RY + A+ + I Sbjct: 70 VEELCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH +D ETV + R GM GM + ++ I RP L R I +L + Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187 Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + D +N D + R R+R + + + + Q + Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + + + + + ++ G G ++ V ++ Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307 Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 +++ ++ R + + R + + E+ Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRRGTHKAGTGTWQEKGG 348 >gi|302332222|gb|ADL22415.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 431 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I + + + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQESVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|225024422|ref|ZP_03713614.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC 23834] gi|224942803|gb|EEG24012.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC 23834] Length = 407 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 71/354 (20%), Positives = 136/354 (38%), Gaps = 17/354 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ LL L S+ R+ ++ SA+ V H L A + ++C++ ++ Sbjct: 3 VGFSGGLDSVVLLHLLCSL---RNELPLELSAVHVHHGLDAPADQWAEFCHELCAQWQVP 59 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + + GL AAAR RY + +A + AH DDQ ET+ + + R Sbjct: 60 LRIERVQVEFGRLGLEAAARAKRYRCFA----QSHADAVALAHHADDQAETLLLAALRGG 115 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + LS M + + + RP L R ++ ++ + ++W ED SN D R Sbjct: 116 GLR--ALSAMPALRALNERISLWRPLLAVSRTELLAYAQEHKLTWVEDSSNADTTLLRNW 173 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDILNI 259 +RR + ++ ++ + +A+L ++ +++ + + Sbjct: 174 LRREALPPWQERVPHLTRQLLATVGRLQHDLALLEDYGQAEHNSLYDAAGRFQVASWRQL 233 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANFLW 317 + L + A ++ P S+ + L + ++ + A L+ Sbjct: 234 PPLRQTHQLHLFA--RNHRLGSPRADSVRQFAATLANPAVRQAQWPLPHSRAILYAGCLF 291 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 A L++ P G + +S I PQ +P G I Sbjct: 292 PIPAEWIPGKLLVQPVWQPAAHGLPENLIQPNSGIWRTPQPGDTLPLPHGRKKI 345 >gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66] gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66] gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72] Length = 425 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLVDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I + ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277 >gi|294625512|ref|ZP_06704140.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600181|gb|EFF44290.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 468 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 129/353 (36%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 47 PPGPVLLAYSGGMDSSVLLHLLAAASRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 103 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ +V + ++ +GL A + I + AH DDQ ET + Sbjct: 104 DALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLL 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R +G L+ M + + + RP L R D+ ++ + W +DPSN D Sbjct: 163 RALRASGPEG--LAAMRPQRPFASGM-LWRPMLAHARADLLAYAHAHGLRWIDDPSNADP 219 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254 +R +R + + +A A+L+ + + + + A+ Sbjct: 220 HHDRNFLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPGVNTASGALDL 279 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L L + LP + ++E+ + + + C + +V + R Sbjct: 280 QALRAQPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDKHAADRHACFAWQQVEVRRW 339 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ RA P+ + WDG Q + +++ + P Sbjct: 340 RQCLFLHRAAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 387 >gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455] gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455] Length = 434 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 140/377 (37%), Gaps = 31/377 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + +L+ VSGGSDSM LL A + + + + +DH LR + + +V Sbjct: 17 RGWLGQTPVLLGVSGGSDSMSLLCAFSRL-----YEPSQLVVLHMDHGLRGASSRDGEFV 71 Query: 74 SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C+ L + + S + AA R RY L E A+ L+ HT DD Sbjct: 72 KKRCAELGVRCVIERRPVSALSRKGESEEAAGRRLRYELYEETAQRFGCRLVALGHTRDD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 E M R G++GM + RP L RR+++R FL + SW + Sbjct: 132 LAENTLMNLARGCGL--WGVAGMPE-----QRDIYIRPLLSFRRQELRDFLRAQGWSWVD 184 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHAL-------YLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D +N + ++R RVR V + + + + L K+ + + + ++ Sbjct: 185 DETNALNIYQRNRVRNEVMPLLAREVNSGVVEHLASLAEEAQLWRKMQEEQSSALCREVS 244 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP--GYRSMERVMLFLKSGKRGC 301 + R +S L L G ++ LP +E + ++ R Sbjct: 245 LPQRGWPCLSLSKLRRVHEFQRRELVRF---VGRRLELPALSRVRIEELDRLMRRSGRFV 301 Query: 302 VSIGRVV-IDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359 G V ++ L A + L L L ET W G D+ + G Sbjct: 302 FQWGSAVDVEAGGGMLCWHPAAEKRLEALELSLGETARWGGWRVSLRRKDASAEAG--FG 359 Query: 360 RKADVPSGIPPIIAQRA 376 + + P ++ + + Sbjct: 360 LRCPLDGARPVVLQKNS 376 >gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2] gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2] Length = 347 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 19/330 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA +++AVSGG DS+ LL G A++VDH L Sbjct: 11 ISAQEARHLFAGWKRIPA-LVLAVSGGPDSVALLWLAARWRKSLKNGP-DLLAVTVDHGL 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + S L I H ++SW+ KP+TG+ AAR+ARY L++ A++ +A I Sbjct: 69 RAAAAHEARNVKRLASSLGITHRILSWRGPKPKTGVPRAARDARYELLARAARSASAVAI 128 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ETV MR R G+ M + + RPFL + + + L Sbjct: 129 VTAHTQDDQAETVLMRLSRGSGITGLAGMAMQ---TERHGVGLLRPFLEIPKARLVATLD 185 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----- 237 + + + +DP+N D + R R+R + + + F L ++++ A A L Sbjct: 186 RAKVVYADDPTNHDPAYTRSRLRALMPVLASEG--ADARTFSRLAMRLSRADAALERMTD 243 Query: 238 -IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 +YL + + + + + LLR + A G P +E ++ L Sbjct: 244 GAERYLRLRGGGGGGFDISLFSTMAEEIQVRLLRRALA-GGMTAHSPELGQIETLLRALA 302 Query: 296 ----SGKRGCVSIGRVVIDRRANFLWITRA 321 G+R S+ + + L + A Sbjct: 303 QARSEGRRFKQSLAGMTVSVEKERLVVRPA 332 >gi|116333183|ref|YP_794710.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367] gi|116098530|gb|ABJ63679.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367] Length = 450 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 12/286 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVAVS G DSM LL L ++ K + + V+H LR+ ++ E ++ C+ +I Sbjct: 24 LVAVSTGVDSMVLLQLLMTLPVTMR---PKLTVVHVNHQLRQQSQTEAAFLKKWCAAHQI 80 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + W + P G+ AAAR RY ++ A + TAH D+Q+ET+ ++ R Sbjct: 81 SLVTTKWPIDQHPSHGVEAAARAFRYDFFAQQLHQQKADWVATAHQADEQVETILLKLIR 140 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 L+GM + + RP L +E ++++ ++ + W ED +N + R Sbjct: 141 GGQL--AQLTGMAASRPLA-GGRVIRPLLPFTKERLKAYAREQQVPWYEDATNQELIASR 197 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---QDILN 258 RVR + + ++ ++ + M+ + L +++I+ S +L Sbjct: 198 NRVRHQLIPLLKQENPQVVEHVMTYAQQLQATL-MISDQALDQQLQTIMTRSDNVAGLLR 256 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 LL IS GY + + + L +G+ S+ Sbjct: 257 HSIAEQRLLLTRLIKQQAPTISA-GYPQIYQCLQLLANGQHPTGSV 301 >gi|304440185|ref|ZP_07400075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371234|gb|EFM24850.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Peptoniphilus duerdenii ATCC BAA-1640] Length = 434 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 26/328 (7%) Query: 1 MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 MF +E+++ +L+ ILV +SGG+DS+ LL AL + D + S ++ Sbjct: 1 MFKKFLETIKS--ENLIKKGDRILVGLSGGADSVYLLRALLYIKDDYNLY---ISCAHIN 55 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 H +RETA + +V ++C + + + +K + A R+ARY Sbjct: 56 HGIRETALRDEDFVKNLCDKFDVPLYINHINMNELAAKYKITSEEAGRKARYDFFDSI-- 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 N I AH DD ETV R R +G+ T + I RP L R Sbjct: 114 -ENIDKIALAHNLDDNAETVLFRIIRGTGLQGL-------TGIPISRDKIIRPILNTNRL 165 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAV 234 I + L + D +N + + R ++R + + K K LR +++ Sbjct: 166 TIENELKSMGQEYMIDETNLSNDYTRNKIRNLLIPLIESEFNSKFKDALIRLRNNSLDSI 225 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--ML 292 ++ L + +++ + +L + + + R + L E + ++ Sbjct: 226 EIIDNIELNFKIEKSLSVDK-LLELSRPERYLIYRKYLEKYYSNVDL-SLVHFEAIDSLI 283 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITR 320 +LK+ ++ + R + L I + Sbjct: 284 YLKNNSGVDLA-SNLRFVRYNDELSILK 310 >gi|262341192|ref|YP_003284047.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272529|gb|ACY40437.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 456 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 137/346 (39%), Gaps = 42/346 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE +R + I VAVSGG DSM L+ L + I+ + LR Sbjct: 5 DHIEKIRKYFS---LKNKICVAVSGGLDSMVLVNLLLDL------SNIELEVAHCNFTLR 55 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTIN 118 + + ++ ++ + C++ I V + K + + AAR+ RY E K I+ Sbjct: 56 NQESDEDEVFIKNFCTKKNIICHVKRFDTLNFSKKNKLSIQMAARKLRYDWFFELLKKID 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I+ H +D +ET ++ R KG+ + N RP +E+I Sbjct: 116 YDYIVLGHHLNDSIETFFLNILRGTGIKGL-------LGIPKKNGKFIRPLSDFTKEEIL 168 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + +NI W D SN + ++ R ++R F+ + K F+ + + ++ Sbjct: 169 HYAKIKNIKWRLDSSNLETKYLRNKIR-FILSKFSYFSSFFCKGFKKTINHLYDENFLIE 227 Query: 239 PKYLTVHMRS---------IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 K V+ I I + + L FYL ++ S G+ +++ Sbjct: 228 EKIKKVYHEITVDKKNHPFIWKIKCNKIEKLQPLSFYLFKLF--------SPYGFYNVKS 279 Query: 290 V--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 + +++ +SGK+ R +I R +++ + R + P+ Sbjct: 280 LKNLIYAQSGKQLISKKYR-IIKNRNDWILVYRKFLSENKTYAIPD 324 >gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353] Length = 425 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLVDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I + ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277 >gi|289809587|ref|ZP_06540216.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 223 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 85/217 (39%), Gaps = 11/217 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 +R G+ G + RP LR R+ + + ++ + W ED SN DD + Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 +R +R L L + F + A Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAE 219 >gi|195977168|ref|YP_002122412.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867630|ref|YP_002743578.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus] gi|226695546|sp|B4U5H9|TILS_STREM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|259533766|sp|C0MC74|TILS_STRS7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|195973873|gb|ACG61399.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700906|emb|CAW97574.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus] Length = 427 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 21/292 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH+ ++ +I+ V+H R + DE Y+ + Sbjct: 22 VLIAVSGGVDSMNLLHFLHAFQAEL---QIRIGIAHVNHKQRPESDDEEAYLRSWAKKHA 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V ++ + AAR RY E + + + ++TAH DDQ ET+ MR R Sbjct: 79 IPIYVAYFQGAFS----ENAARHFRYQFFEEIMQQEHYSALVTAHHADDQAETILMRLIR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L+G+ + + + RPFL +E++ N ED SN + R Sbjct: 135 GSRLR--HLAGIREVQPFATG-QLIRPFLTVSKEELP------NPFHFEDHSNDSMAYFR 185 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 RVR L + + + ++ +L+ + + L + Sbjct: 186 NRVRHH----YLPDFKRENPQATQSLIALSAESRLLLQAFDDLTKGLAFHRLDCFLAQSA 241 Query: 262 TLLFYLLRVSAAICGG-QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + F+LL+ I + + ++ K G + ++I++ Sbjct: 242 AVQFFLLQHYLETFPQLAIKKSQFDDLLHIIRRQKQGIYPIKNTYCLLIEKE 293 >gi|23097532|ref|NP_690998.1| cell-cycle protein [Oceanobacillus iheyensis HTE831] gi|61216653|sp|Q8EU18|TILS_OCEIH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22775755|dbj|BAC12033.1| cell-cycle protein [Oceanobacillus iheyensis HTE831] Length = 466 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 17/248 (6%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +S+ F++ L A I+V VSGGSDSM LL L ++ I+ A++++H LR Sbjct: 3 QSILSFIQKHQLLKEGAKIIVGVSGGSDSMALLHFLKNLQEQWE---IEVIALTINHQLR 59 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTIN 118 E + + ++V C I + Q AAR RY + + Sbjct: 60 GEDSTADQKFVEQWCFHSDIRCIAHQVDVGEYQRQYRVSEELAARRLRYEIYEAEMRKQG 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A + H DDQ+ET++MR R G+ + + RPFL ++ I Sbjct: 120 ADYLALGHHGDDQVETLFMRLTRVATSN--AFEGIPVKRSFASG-QLIRPFLCVNKQLIL 176 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235 +++ + + + ED +N D+++ R R + + + L++ ++ + + N +A Sbjct: 177 NYVKENEVPFREDQTNKDNKYTRNYYRNEIIPLLTKNNERLFITAQRLSETLREDENYLA 236 Query: 236 MLIPKYLT 243 + + Sbjct: 237 KEANRMVE 244 >gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c] gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c] Length = 430 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ Sbjct: 15 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + II + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIIQV 249 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 250 NAADLSDFNCHQLSL 264 >gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49] Length = 425 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 81/349 (23%), Positives = 134/349 (38%), Gaps = 32/349 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDYQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGNVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQYFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + L Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDLQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 + I Q + +LL+ SL + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQ---NYLEKFPSLNLSKQQFEEVLNILRTKANY 278 Query: 301 CVSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345 ++ +V D + + I+R IL E + G Y+F Sbjct: 279 RHTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327 >gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603] gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603] Length = 432 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 12/241 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI++AVS G DSM LL L L++ K + I ++H LR+ + +E + C Sbjct: 12 DHIVLAVSTGIDSMCLLHLL---LNEYQHTYSKLTCIHINHGLRQASIEEEAFFKTYCEE 68 Query: 80 LRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + + S+ + +R+ RY K + A++++TAH DDQ+ET++ Sbjct: 69 HGIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLLTAHHRDDQIETIF 128 Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + +G++ + Y + RP L + I+S+ Q N+ + ED SN Sbjct: 129 YRLFTGRFTRSHLGIAYTSQRVSY----QLVRPMLDISKATIKSYQNQYNVPFFEDVSNH 184 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 ++ + R +R + + L + L+ + +A L K ++ ++ +S++ Sbjct: 185 NNVYVRNDIRNRIIPAVMDNQQLDVAHLLKLKSWHDQELATL-RKSAHHFIKEVVRVSEN 243 Query: 256 I 256 + Sbjct: 244 L 244 >gi|229542263|ref|ZP_04431323.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1] gi|229326683|gb|EEN92358.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1] Length = 478 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 107/261 (40%), Gaps = 21/261 (8%) Query: 2 FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 L+ ++V F+R + H+LVAVSGG DS+ LL L S R ++K +A V Sbjct: 1 MLAFEDNVFHFIRKHRLIEAGDHLLVAVSGGPDSLALLHFLT---SRRERFRVKITAAHV 57 Query: 59 DHCLRETAK-DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEH 113 +H LR A ++ +V C RI V K + G+ AAR+ RYA ++E Sbjct: 58 NHMLRGEASCKDLLFVKSFCESHRIGCEAAEIPVLEKAKEEGLGIEEAARKYRYAFLAEA 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + A ++ H DDQ+ETV MR R KG I RP L Sbjct: 118 MEKTGANKVVLGHHGDDQMETVLMRLTRGAGGKGRAGIPFRRPFAKG---EIIRPLLGTA 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 +++I + ++ D SN F R R R V L K+ + Sbjct: 175 KKEIIDYCAHYHLEPRTDESNASPDFARNRFRASV-------LPFLKKENPRAHLHFQRF 227 Query: 234 VAMLIPKYLTVHMRSIIAISQ 254 L+ + ++ + + Q Sbjct: 228 SEELLEDEIYLYGLAQEKLKQ 248 >gi|188990960|ref|YP_001902970.1| Putative cell cycle protein mesJ homolog. [Xanthomonas campestris pv. campestris str. B100] gi|167732720|emb|CAP50914.1| Putative cell cycle protein mesJ homolog [Xanthomonas campestris pv. campestris] Length = 432 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 80/353 (22%), Positives = 126/353 (35%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 PA +LVA SGG DS LL AL + R G A+ V H L A + C Sbjct: 11 PPAPVLVAYSGGMDSAVLLHALAATDGYREAG---LRAVHVHHGLHADADAWALHCQQQC 67 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L IA VV + ++ + AA A + AH DDQ ET + Sbjct: 68 AALGIALQVVRVQVARDSGSGLEAAARAARHAAFAATLAAG-EWLALAHHRDDQAETFLL 126 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R G L+ M + + RP L R D+ ++ + W +DPSNTD Sbjct: 127 RALRASGPDG--LAAMRPQRPFGPG-TLWRPLLGHARADLAAYAQAHAVRWIDDPSNTDP 183 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM---RSIIAISQ 254 + +R +R V L +A +L + + S A+ Sbjct: 184 QHDRNFLRTQVLPALQQRWPLAADALARSAQLCGDASTLLHDDDVNLLPTVCNSAGALEL 243 Query: 255 DILNID-STLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L LLR A + G ++ER + + ++ C + + I R Sbjct: 244 QPLRSHFPARRARLLRAWVAAAHAPPLPAQGVHALEREIATTQPDRQTCFAWQQTEIRRW 303 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ A P + W+G + +Q+ + + P Sbjct: 304 RQQLYLLSARATWPA-----QWQAEWNGDSTLLLPDGTQLQLRGTPGLRFEQP 351 >gi|291613873|ref|YP_003524030.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1] gi|291583985|gb|ADE11643.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1] Length = 445 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 125/330 (37%), Gaps = 18/330 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L +HILV +SGG DS ++ LH + + + SA+ V H + A Sbjct: 16 HFAPLLPRHSHILVGLSGGMDS---VVLLHLLHILAPRFEWRLSALHVHHGISPNADAWA 72 Query: 71 RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + +D+C+R I + + + + G+ AAAR+ R+A + + AH Sbjct: 73 NFCADLCARKGIPLHIERVDIAPLRDEHGIEAAARKLRHAAFA----RQPCDYVALAHHA 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ ++ R KG+ + I RP L R+++ + Q+ + W Sbjct: 129 DDQAETLLLQLLRGAGVKGVAAMPAVKSATPHARA-ILRPLLDVSRDELSEYAQQQGLRW 187 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ED SN DD + R +R + + A +L S Sbjct: 188 VEDESNADDAYPRNFLRHRLLPLLEQRFPAYRDTLIRSAQHFAEAGDLLDELARQDAQDS 247 Query: 249 IIAISQD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCV 302 + D + + + LLR + +P ++ ++ L + CV Sbjct: 248 LTDGPLDVSLLRALSHSRARNLLRYYLHM--RNTPMPQAVQLDEMLHQLCDARDDAAVCV 305 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP 332 G + R + + + A+ ++ P Sbjct: 306 EFGGWQLRRYRDKVHVFSALAAFDRNLVLP 335 >gi|257455699|ref|ZP_05620928.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60] gi|257446982|gb|EEV21996.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60] Length = 485 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 73/412 (17%), Positives = 145/412 (35%), Gaps = 54/412 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +A SGG DSM LL A + + I ++H L++ + D + V C + Sbjct: 30 KIYIACSGGRDSMALLFACQQLQ-------LPIHVIHINHKLQKISDDWQQLVEGYCHKH 82 Query: 81 RIAHSVVSW-----------------KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 I + V + Q AR ARY I + A ++ Sbjct: 83 HIDYDSVCIDWQSQQVYGADSTISQEQQVGTQQVNEQQARTARYHAIMQIAGEN--AIVA 140 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ+ET+ + + G+ G++ + +W+ RP L R++I F+ Sbjct: 141 LAHHANDQVETLLINVCQGTGLAGLTGMTAFGVQHEFGKPIWLWRPLLGVTRDEISDFVA 200 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + I + +DP+N +R +R + + + ++ + + A ++ +Y Sbjct: 201 AQPIPYVDDPTNFGVANQRAFLRNQILPLLDERFHKVVQNITRTQQNLTEAQRIVEEQYQ 260 Query: 243 TVHMRSIIA----ISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYR---SMERVM 291 + Q L+I + R + G Q P + +E+++ Sbjct: 261 QDLALCQWSNSWTSHQQCLHIPNLKALSQARRFNLLHHWVKGSQKFAPTRQWIVQIEQLL 320 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 ++ ++ + + I + + L+ R + I D R +D Sbjct: 321 QSAQTDQQAILQWQGIEIRKYRDTLY--RLDADYVKAI-----HGKSDNRVLVNLTADLG 373 Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 + +G + +P Q S F + +FD+P Sbjct: 374 LSVGLSPELALASRAVLPNESFQLLSQSFHQS---------FKKLCQRFDIP 416 >gi|170701543|ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] gi|170133537|gb|EDT01915.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10] Length = 468 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 144/403 (35%), Gaps = 31/403 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVALAYLPADARIAIAYSGGLDSTVLLDA-----TVRMAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A V + RL + + G+ A+ARE RYA + + + Sbjct: 69 ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVATLWV 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RPFLR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 ++W +D SN D R+ R +R V L L + F+D + A L+ Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPTLAMHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + L+ D+ + F LLR G S +M R + Sbjct: 244 AELDFAGAARDDGRALSRDALVAFDDTRGANLLRFWMRRLGLPSASAGRLANMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348 V + + ++ P T + PE + WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSAAPADDGTGMPRPEASLAWDGQEVWHVPAWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + + +A +P + + A + ++ GG+ L Sbjct: 364 GTFVF----APAEAGSDGAVPEALLRGATLVVRARAGGERLRT 402 >gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912] gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912] Length = 497 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 131/321 (40%), Gaps = 20/321 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L +++AVSGG DSM + + + F VDH +R + DE R+V Sbjct: 13 RELPPLHRVVLAVSGGVDSMVAMDLIGQLSGALGF---SVVVCHVDHRMRPESGDEQRFV 69 Query: 74 SDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 R +A V + K AAAR RY +++ A+ A ++ AH D Sbjct: 70 EAEAVRRGLAFQGVAVDVPGRIRKTGESPQAAARALRYEALTQCAREAGAEAVILAHHQD 129 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV +R R + G+G GM + + +LW RPFL+ + ++ ++ I + Sbjct: 130 DQAETVLLRLLRGTSPAGLG--GMNEVRRWG-DLWWLRPFLKVPKAELVAYATDHGIPYR 186 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRS 248 EDPSN ++ R ++R + + ++K L + A+L P L R Sbjct: 187 EDPSNWSTKYLRNKIRLQLIPLLEREYQPQIKNHLARLAQMIQEDEAVLTPMALEARDRC 246 Query: 249 IIAISQDIL-------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + S + ++ + L +L + ++ G +E + G+ G Sbjct: 247 VRGGSGNYRIDIPRFSDLPAALQRRVLTLILDYPSERLPGWGAIQVEALRNLALHGRSGS 306 Query: 302 --VSIGRVVIDRRANFLWITR 320 G R + L + R Sbjct: 307 ELRLSGGWRARRVYDELVLDR 327 >gi|323342361|ref|ZP_08082593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463473|gb|EFY08667.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Erysipelothrix rhusiopathiae ATCC 19414] Length = 400 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 29/287 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +V VSGG DSM LL L I A V++ RET+K + V C Sbjct: 3 HKKWIVGVSGGPDSMALLDILSK-------QNIPCVAAHVNYGKRETSKRDEDIVRKYCE 55 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + I ++++ AR RYA E +A + AH F+D LET + Sbjct: 56 KNHIPFECSNYEDDGKNHNFQHQARAFRYAFFKELVLKYDAEGVAIAHHFNDDLETYLFQ 115 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 QR + +GL+ + +++ + RP L ++ + + I + D SN Sbjct: 116 KQRKMESEHVGLAQYTEI----MDVTVWRPLLDMTKDMVVQYCDDHQIQYGIDESNLSLD 171 Query: 199 FERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + R ++R + +D ++ L K++ + R K+ ++A+ + + V M ++I Sbjct: 172 YTRNQIRNDIHYMDENSYESLVKEMLAAKQYGEKRSKMVKSIALQLDSKVKVDMYALIQ- 230 Query: 253 SQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKS 296 + +LR+ A G +S P + ++ ++L K+ Sbjct: 231 --------DGIRPRVLRLWMAQNGVETHTMSGPFLKELDTLILQEKA 269 >gi|325684695|gb|EGD26849.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 431 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 14/320 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL + + G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W K+ P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LE + ++ R + + + + RP L + D+ ++ ++ + + Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED +N R R+R+ V + ++ ++ + Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEITAEEDYFAQAAGKLPEPEP 242 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 I L++ + ++R++L + + G + + Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297 Query: 310 DRRANFLWITRAVRNLPTLI 329 W+ + P+ + Sbjct: 298 SFYQGHYWLYPVKQPAPSPL 317 >gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P] gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P] Length = 436 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 19/237 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + +L+A+SGG DS+ L L ++ K + + LR + + +V Sbjct: 15 FLKEKRLLIAISGGLDSVVLTRLLSTL-------KFDITLAHCNFNLRGIESNLDAIFVE 67 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ L + S+K K + AAR RY E + + I+TAH DD Sbjct: 68 ELAKELAVKCFSTSFKTEKLAKEKKESTQIAARNLRYHWFQEISARHHFDYILTAHHADD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R G T + ++ + RP L+ RE+I F + NI W E Sbjct: 128 NLETFLINLTRGTGLAGF-------TGIPPVHGNVIRPLLQFSREEILHFAKENNICWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 D SN ++ R ++R + + + F + + ++ + ++ Sbjct: 181 DQSNASTKYLRNKIRHKILPVLKDINPNMLASFSKTLENLQESAQIISDRIEETSLK 237 >gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC 25745] gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC 25745] Length = 456 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 7/245 (2%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I+VAVS G DS L+ AL ++ + V+H LRE + +E R++ C + Sbjct: 20 KIVVAVSTGVDSTVLINAL---INSTKIKHQQLIVAHVNHQLREQSIEEERFLHKWCRQH 76 Query: 81 RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I W K+ PQ G+ AAARE RY + +A +++TAH D+Q E M+ Sbjct: 77 QITFMETDWPKSQHPQHGVEAAAREFRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQV 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R L+G+ + + W+ RPFL+ ++ + + + W ED +N F Sbjct: 137 IRGGWLN--QLNGIPERRTFAQG-WLIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTEF 193 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R RVR + ++ Q + ++ ++ L + S D+L + Sbjct: 194 LRNRVRNEIIPAFRKENPRVVEHIQHYQDQLLEQSNLVDQVVLEKLTKLQRDESFDLLAL 253 Query: 260 DSTLL 264 L Sbjct: 254 RKESL 258 >gi|146296231|ref|YP_001180002.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409807|gb|ABP66811.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 455 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 132/356 (37%), Gaps = 29/356 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E VR+ + L +L+ SGG DSM LL ++ + + ++ + ++ Sbjct: 1 MDFLERVRWTIEKHNMLKKGDKVLIGCSGGIDSMVLLDCIYRLKDE---YELDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115 H LR+ A ++ +V D C R I S + + A R ARY E Sbjct: 58 HMLRQEAIEDELFVIDTCKRYNIKCITRSIDVRKIKEERKLSEEEAGRLARYNFFYELVN 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 ++ + I+ H +D +ET ++ R G+ + + ++RP + RE Sbjct: 118 SLGLSKILLGHNKNDVVETFFLNLFRGSGLDGLA-------SIPPVRDIVARPLIYMSRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227 +I + + I + D +N +++R VR + + ++ + +D Sbjct: 171 EIEEYAEENGIKYVIDKTNFSSKYKRNVVRNQILPVIREKFGDGVIDTIFRTINLIRDEN 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 +++N + + + + + + + L L++ + + Sbjct: 231 LQINELIDDIFKRCVKKEDIYYVLDINPVTALPPFLQRRLVKRTFKEF---DRPISLEIV 287 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343 E V+ ++++R+ + + + P + D RY+ Sbjct: 288 EDVLKLFSLPSGKKKVFDDLIVERQNDAIVFYKKAEEKTFCFEIPLKEEY-DIRYR 342 >gi|104773521|ref|YP_618501.1| hypothetical protein Ldb0367 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513516|ref|YP_812422.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422602|emb|CAI97205.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092831|gb|ABJ57984.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 431 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 14/330 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + S F L + LVA SGG DSM LL + + G + A +DH Sbjct: 1 MDIKKRLSAFFAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR ++ E + + C + ++ W K+ P++GL AAAR+ RY + E A+ + A Sbjct: 56 QLRADSQKESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKA 115 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DD LE + ++ R + + + + RP L + D+ + Sbjct: 116 DYLLTAHHGDDLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLA 172 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + ++ + + ED +N R R+R+ V + ++ ++ Sbjct: 173 YAKKQGLEYVEDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQ 232 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I L++ + ++R++L + + Sbjct: 233 AAGKLPEPEPFFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQE 291 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLI 329 G + + W+ + P+ + Sbjct: 292 K----GGLHLSFYQGHYWLYPVKQPAPSPL 317 >gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D] gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D] Length = 418 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ Sbjct: 3 LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 60 CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 177 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + I+ + Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 237 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 238 NAADLSDFNCQQLSL 252 >gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a] gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a] Length = 418 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 8/227 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 3 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P+ GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 60 CQQYKLQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 177 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + R R+R FV D L +F + + +L K Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK 224 >gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115] Length = 425 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 26/303 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFEKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLFTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGMN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI 304 ++ Sbjct: 280 HTL 282 >gi|325125152|gb|ADY84482.1| Putative cell cycle protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 431 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 14/330 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + S F L + LVA SGG DSM LL + + G + A +DH Sbjct: 1 MDIKKRLSAFFAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR ++ E + + C + ++ W K+ P++GL AAAR+ RY + E A+ + A Sbjct: 56 QLRADSQKESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKA 115 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DD LE + ++ R + + + + RP L + D+ + Sbjct: 116 DYLLTAHHGDDLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLA 172 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + ++ + + ED +N R R+R+ V + ++ ++ Sbjct: 173 YAKKQGLEYVEDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQ 232 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I L++ + ++R++L + + Sbjct: 233 AAGKLPEPEPFFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQE 291 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLI 329 G + + W+ + P+ + Sbjct: 292 K----GGLHLSFYQGHYWLYPVKQPAPSPL 317 >gi|149372519|ref|ZP_01891631.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49] gi|149354562|gb|EDM43126.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49] Length = 436 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 23/309 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75 + I+VA SGG DS L L + + LR A D + +V + Sbjct: 16 LKDKKIIVACSGGLDSTVLTRLLKQL-------GFTICIAHCNFSLRGEASDGDAAFVEN 68 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + L I + + + AARE RY E I LI TAH DD Sbjct: 69 LATELDIPFYKTVFDTKAFANDHKLSTQMAARELRYQWFKELRTQIKFDLIATAHHADDM 128 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LETV + R +G+ T + +L I RP L R +I +F + W ED Sbjct: 129 LETVLINLSRGTGIRGL-------TGIPELTETIIRPLLPFSRTEILNFAKKSEFYWRED 181 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 SN + R +R V +A +K + + A L+ Y+ + ++ Sbjct: 182 ASNASTDYLRNDLRHNVIPAYKNASKNVLKGLHNTVSHL-QATEQLVGDYIVLLYNLLVK 240 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVVI 309 + + ID L + SA + +S G+ + + ++ +SGK R++ Sbjct: 241 ETSEGYEIDLIKLADIPNQSAVLYE-LLSPFGFTAWDDIINLTNAQSGKMVFSESHRLLK 299 Query: 310 DRRANFLWI 318 DR+ L + Sbjct: 300 DRKKLILTL 308 >gi|241668228|ref|ZP_04755806.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876763|ref|ZP_05249473.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842784|gb|EET21198.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 400 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 106/281 (37%), Gaps = 15/281 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L + + ++ P+HI++ SGG DS LL + I AI ++H Sbjct: 1 MSLDKTQIISQILKH--SPSHIIIGYSGGVDSSVLLDITKDL-------DIPTIAIYINH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + A + +C+ I S + A A + R E ++ Sbjct: 52 NIHPDALKWQLHCQTICNNANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSP 111 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ H DDQ ET +++ R G+ + + + RP L ++DI+++ Sbjct: 112 TLLLGHHLDDQAETFLIQAIRGSGLAGLASMPYYKQLNHGA---VLRPLLDYTKKDIQNY 168 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAML 237 Q I+ D SN + ++ R +R + I + + + + + NN + L Sbjct: 169 ASQNKINHIYDDSNENIKYRRNLIRNQIMPILEQINPNISRTLSRSAKICAESNNILQKL 228 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 + + L + I ++L +D + L+ Q Sbjct: 229 LNEKLQKISKDNSLIISELLTLDKDIQKSLIHHWFKETTNQ 269 >gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087] Length = 425 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 134/348 (38%), Gaps = 30/348 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L R+ D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFRKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLESFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345 ++ +V D + + I+R IL E + G Y+F Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327 >gi|325920753|ref|ZP_08182659.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865] gi|325548805|gb|EGD19753.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865] Length = 431 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 143/390 (36%), Gaps = 24/390 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P ILVA SGG DS LL L + R+ G A+ V H L A + C Sbjct: 10 PPGPILVAYSGGMDSGVLLQLLAAAPRYRNIG---LRAVHVHHGLHADADAWAAHCQRQC 66 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L+I + K ++ +GL A + + AH DDQ ET + Sbjct: 67 DALQIPLQIARVKVAR-DSGLGLEAAARHARHAAFAETLTPGEWLTLAHHRDDQAETFLL 125 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R G L+ M + + + RP L R D+ ++ + W EDPSN D Sbjct: 126 RALRASGPDG--LAAMRAQRPFAGGM-LWRPLLHHARTDLLAYAQAHGLEWIEDPSNADI 182 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSIIAISQ 254 R++R +R + + + +A A+L+ + + + + A+ Sbjct: 183 RYDRNFLRTQLMPLLQQRWPQAAEALARSAHLSADASALLLQEDTALLPTMLTATGALDL 242 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L L + LP + ++E+ + ++ + +V + R Sbjct: 243 QRLRAQPATRRPRLLRAWVSAAHAPPLPAHGITALEQEIDNHAPDRQARFAWQQVEVRRW 302 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP------- 365 L++ R P P+ T WDG+ Q + +Q+ + P Sbjct: 303 RQCLYLLRPHAEWP-----PQWQTHWDGQAALQLPDGAQLQLHGAPGLRFAQPLLVCARH 357 Query: 366 SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395 SG ++ QRA S + L P+ R Sbjct: 358 SGERIVLPQRAHSHRLKHLLQELDLPPWER 387 >gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8] gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8] Length = 445 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 71/346 (20%), Positives = 130/346 (37%), Gaps = 23/346 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V+ L + VA+SGG DS LL + + + A+ ++H L+ R Sbjct: 21 VQKLPACQELWVALSGGLDSSLLLHVVAAAYP-------RVRALHINHQLQSNHDQTERA 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 D+C+ L + V + L +AR ARY + E + L++ AH DDQ Sbjct: 74 CIDLCAGLGVELQVRRVNVATGAGSLEESARAARYEVFREVL--GDNDLLLMAHHADDQA 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV R R G+ + ++ + RP+L R + ++ +SW EDP Sbjct: 132 ETVLFRLLRGTGVNGLAGMPVSRSL---GRGHLYRPWLGVSRSRLEQVAREQGVSWAEDP 188 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN + +R +R V +K+ + L + + +S Sbjct: 189 SNQSEVHDRNYLRHSVMPGLKQRWPGLLKRVAH-SARACAESETLSQRLAELQWQSCGDD 247 Query: 253 SQDILNIDSTLLFYLLRVSA---AICGGQISLPGY----RSMERVMLFLKSGKRGCVSIG 305 I + L + R + I G + +P ++++++ S + + Sbjct: 248 KGRIRLAPFSALGRIERRNLVRWWIHGRGLPVPALSDWCSALDQLL-HAGSDRTPEIRGD 306 Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDS 350 I R + L++ V + L P + W G + + + S Sbjct: 307 GFCIRRYRDHLYLVPQVAIPVGPRPLLPGQVMEW-GWWTLRLMPAS 351 >gi|224824978|ref|ZP_03698084.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002] gi|224602649|gb|EEG08826.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002] Length = 447 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 15/299 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL L + +R +K SA+ V H L A + +C + Sbjct: 31 VGLSGGIDSVVLLDLLVRLCLERG---LKLSAVHVHHGLSPQADAWAEHCRQLCLEWGVP 87 Query: 84 HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K L A AR+ RY + +A++++ AH DDQ ETV ++ R Sbjct: 88 LRSEAVKVEVSGGESLEAVARQHRYRVYG----ESSASVVVLAHHQDDQAETVLLQLLRG 143 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG+ T+ W+ RP L R +I ++ R + W ED SN D R+ R Sbjct: 144 AGPKGVAAM---PTLRRHAGRWLWRPLLAISRAEIEAYARWRQLVWVEDESNVDTRWRRN 200 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA---ISQDILNI 259 +R + + A+ + Q V + +A A+L + R A + Q + ++ Sbjct: 201 LLRHDILPLIESAIPHYRQHLQRAAVLMADASAVLDEQAEQDLQRCRDAGRLLVQPLSSL 260 Query: 260 DSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 +L+ G G S +L + + + + + R LW Sbjct: 261 SPPRQRNMLQYWLERLGLGVASPEALEQFRHQVLHAAPDRNPELLLPQGRVFRYRGALW 319 >gi|291540846|emb|CBL13957.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Roseburia intestinalis XB6B4] Length = 485 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 114/329 (34%), Gaps = 23/329 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + ++V +SGG+DS+ L +L R AI V+H +R E ++ + + Sbjct: 13 KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123 V +C + I + G+ AAR RY + A+ + I Sbjct: 70 VEKLCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH +D ETV + R GM GM + ++ I RP L R I +L + Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187 Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + D +N D + R R+R + + + + Q + Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + + + + + ++ G G ++ V ++ Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307 Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRN 324 +++ ++ R + + R R+ Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRNQRD 336 >gi|229829758|ref|ZP_04455827.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM 14600] gi|229791747|gb|EEP27861.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM 14600] Length = 509 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 37/332 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 L +L+AVSGG+DS+ LL L R + + V+H LR + ++ +V Sbjct: 18 LAPKDRLLLAVSGGADSVALLRL---ALIWRRKYDLLLRVLHVEHGLRGRESLEDAAWVR 74 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C + VV AAR RY + E A + I+ AH +D Sbjct: 75 KLCREHGLPCQVVPVDVRALAETEGRSEEEAARILRYQALEEAAARWDGAKIVLAHNLND 134 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET+ R +G+ + I RP L R +I +L W Sbjct: 135 AAETLLFHLVRGTGLEGLA-------AIPPKRGRIVRPLLAASRREIEDWLRDLGQEWRR 187 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-------DLRVKVNNAVAMLIPKYL- 242 D SN +D + R R+R V L ++ + + + +YL Sbjct: 188 DRSNEEDTYSRNRIRHQVLPPLLGENQRALEHMARTAGIAREASGYIRRQAKRALDRYLL 247 Query: 243 ------------TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + +S D+ D L +LR++ G G ++ + Sbjct: 248 PGGQERGDLTERLLPRPASWILSLDLKREDPFLQREILRLALETAAGGAKDLGCAHVQAL 307 Query: 291 MLFLK--SGKRGCVSIGRVVIDRRANFLWITR 320 + L+ +G+R + G +VI + + +R Sbjct: 308 LDLLRGQAGRRLDLPYGLLVIRGYKSLQFFSR 339 >gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners ATCC 55195] gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus iners ATCC 55195] Length = 418 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E + ++ Sbjct: 3 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 60 CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 177 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252 + R R+R FV D L +F + + +L K + I+ + Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 237 Query: 253 SQDILNIDSTLLFYL 267 + L+ + L Sbjct: 238 NAADLSDFNCQQLSL 252 >gi|89092105|ref|ZP_01165060.1| mesJ protein [Oceanospirillum sp. MED92] gi|89083840|gb|EAR63057.1| mesJ protein [Oceanospirillum sp. MED92] Length = 442 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 24/311 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++A SGG DS L L+ + + + V+H L + + R Sbjct: 32 DRWVIAHSGGLDSQ-----LLLHLAAKHLADRELLVVHVNHQLHPKSGAWAEFSQREAER 86 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L ++H V P++ A AR+ARYA + + + ++ H DDQ ET+ R Sbjct: 87 LGLSHKVSCVV---PESSSEAHARDARYAAFTSLLRENDC--LLMGHHADDQAETILFRM 141 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G L GM + + + RP L R ++ + +++ +DPSN+ D + Sbjct: 142 IRGSGIRG--LQGMPFSRQFAQG-QLLRPLLNLERSELEGAVQNLGLAYIDDPSNSLDHY 198 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI--- 256 +R +R V ++FQ ++ + +L+ YL + S + Sbjct: 199 DRNYLRHHVLPRIKERWGSVTQRFQQ-NAQLLSQTELLLKHYLQADLDSCSEGDDCLDIR 257 Query: 257 --LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311 L++ LLR A+ G + + + ++ + V I R Sbjct: 258 AWLSLPDIRQPELLRFWVALRTGVT--LNQKQVSSISSDLIMAQDDATPVFKRKGVEIRR 315 Query: 312 RANFLWITRAV 322 N L++ V Sbjct: 316 FQNQLYLVPEV 326 >gi|125716899|ref|YP_001034032.1| PP family ATPase [Streptococcus sanguinis SK36] gi|166988067|sp|A3CJX7|TILS_STRSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|125496816|gb|ABN43482.1| Cell cycle control ATPase, PP-loop superfamily, putative [Streptococcus sanguinis SK36] Length = 425 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 26/303 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L ++S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFSGLN--LSKQQFEEVLNILQTKANYQ 279 Query: 302 VSI 304 ++ Sbjct: 280 HTL 282 >gi|26988340|ref|NP_743765.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida KT2440] gi|61216636|sp|Q88MG3|TILS_PSEPK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24983090|gb|AAN67229.1|AE016350_2 cell cycle protein MesJ, putative [Pseudomonas putida KT2440] Length = 427 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 106/308 (34%), Gaps = 24/308 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R+ AI + H L+ A + +C + Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAR+ARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASLEQAARDARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L C R+ ++ + + ++W EDPSN D +F R Sbjct: 130 GLRGLAAMPGQRAL---GQGSLVRPLLACSRQHLQEYAQAQGLTWIEDPSNVDTQFARNY 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRS--------IIAI 252 +R V + F + A + L + L + + Sbjct: 187 LRGEVMPHLQQRWPQASQNFARAAEHLGEALGLLDELAQEDLALAGKGAPLAWPGLDSLD 246 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVID 310 +L + L+ + LP R + + R + + Sbjct: 247 LAALLALSPARQRNALQYWL---SQRTRLPDTRHWAGWADLRDAGADARPVWRLADGRLV 303 Query: 311 RRANFLWI 318 R +W Sbjct: 304 RSHGRIWW 311 >gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405] gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678] gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1] gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057] gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408] Length = 425 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 120/303 (39%), Gaps = 26/303 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L ++S + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I + ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI 304 ++ Sbjct: 280 HTL 282 >gi|307243197|ref|ZP_07525370.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM 17678] gi|306493458|gb|EFM65438.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM 17678] Length = 459 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 14/194 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V +SGG DS+ LL L+ + ++ IK A+ ++H +R A + YV +C L Sbjct: 22 IVVGLSGGPDSVCLLHTLYRLSKEK---DIKIYAVHLNHMIRGLDAFLDSLYVMKLCQSL 78 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I + + K + GL AR+ RY + SE + A I H +DQ ET+ Sbjct: 79 YIPCFIRTIDVPKYCQENKLGLEDGARKLRYQVFSEVRDRLGAKKIAIGHNKNDQAETIL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G+ I Y + RP L RE I ++ ++ + D SN + Sbjct: 139 MRIMRGTGLQGL------RGIEYKRKDGVIRPILDIDRESIEAYCMEHKLLPRIDSSNLE 192 Query: 197 DRFERVRVRRFVRD 210 + R ++R + Sbjct: 193 PIYSRNKIRLKILP 206 >gi|330686057|gb|EGG97679.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU121] Length = 433 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 12/253 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI++AVS G DSM LL L L++ K + I V+H LR+ + +E + C Sbjct: 13 DHIVLAVSTGIDSMCLLHLL---LNEYQHTYSKLTCIHVNHGLRQASIEEEAFFKTYCEE 69 Query: 80 LRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I + + S+ + +R+ RY K + A +++TAH DDQ+ET++ Sbjct: 70 HQIEYFIKRLDLSETVEAGNSIQNVSRQYRYDWFDSIMKQLGANVLLTAHHQDDQIETIF 129 Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + +G++ Y + RP L + I+S+ Q NI + ED SN Sbjct: 130 YRLFTGRFTRSHLGIAYTSQRSSY----QLIRPMLDISKAAIKSYQNQYNIPFFEDVSNH 185 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-IAISQ 254 + + R +R + + L + L+ + +A L ++ ++ Q Sbjct: 186 KNVYVRNDIRNRIIPAVMDNQQLDVAHLLKLKSWHDQELATLRKSAHHFIKEAVQVSEKQ 245 Query: 255 DILNIDSTLLFYL 267 D + I L Sbjct: 246 DKIVIPRGRFNRL 258 >gi|148549375|ref|YP_001269477.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1] gi|148513433|gb|ABQ80293.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1] Length = 427 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 8/216 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R+ AI + H L+ A + +C + Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAREARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASLEQAAREARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L C R+ ++ + + ++W EDPSN D +F R Sbjct: 130 GLRGLAAMPGQRAL---GQGSLVRPLLACSRQHLQDYAQAQGLTWIEDPSNVDTQFARNY 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +R V + F + A+ +L Sbjct: 187 LRGEVMPQLQQRWPQASQNFARAAEHLGQALGLLDE 222 >gi|73540827|ref|YP_295347.1| PP-loop [Ralstonia eutropha JMP134] gi|72118240|gb|AAZ60503.1| PP-loop [Ralstonia eutropha JMP134] Length = 484 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 82/406 (20%), Positives = 144/406 (35%), Gaps = 38/406 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG DS+ LL A + +S + A+ V H L+ A + +D+C+R Sbjct: 46 VAVALSGGRDSVALLHATQAAVSAWRMPA-RVVALHVHHGLQAQADAWDAFCADLCARWE 104 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + V G+ AAAR ARY + + + A ++ AH DDQ+ETV +R Sbjct: 105 LGYFVRRVSVQAGTGEGIEAAARRARYEALGDMCRASGARFLLFAHHLDDQVETVLLRLF 164 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GM + ++ + RP+L R DI S+ ++W +DPSN R+ Sbjct: 165 RGAGVAGMSGMPAMRKLDEAGDIMLLRPWLEVPRADIDSYCAAHELAWIDDPSNDSTRYA 224 Query: 201 RVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS------IIAI 252 R +R + + D AL + + + + L L + + Sbjct: 225 RNALRAQLPLLERDFPALRANVAQAAAHFAQAARMLDDLAGTELARLAAPGRDPDTLAEL 284 Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 L + ++ +LR+ G + + R L SG ++ +V+ R Sbjct: 285 DLSGLRALPASHADAVLRLWLRDLGARAPSTARLAAMREQLLDHSGGEPAIAHDNLVLRR 344 Query: 312 RANFLWITRAVRNLPTLILYPEETT-------VWDGRYQF-------------------- 344 + + P W G +F Sbjct: 345 FQGRVLACTPEPDAPPTAQALTWRGEPRIVVPAWRGELRFTRDDTFGVPEAVLQQPLRIA 404 Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390 Q I + P +A + + + +P G L+ Sbjct: 405 QRTGGERIVLRPGGPARALKQAYQEAGVPRWRRCWLPLLWAGDTLV 450 >gi|306832496|ref|ZP_07465648.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425396|gb|EFM28516.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 421 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I+ +F + +L+AVSGG DSM LL L+ R +I+ ++H R+ Sbjct: 9 IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E Y+ + + +I V + AAR+ RY + N T ++TA Sbjct: 62 SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ET++MR R + LSGM + + RPFL ++D+ Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQAVSSFGTG-ELIRPFLTIPKKDLPE------ 168 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I ED SN + R R+R L +L + KF+ + L + Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224 Query: 246 MRSIIAISQDILNIDSTLLFYL 267 + L + + L Sbjct: 225 AEIDVTDCSQFLAQTTAVQTVL 246 >gi|291548189|emb|CBL21297.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Ruminococcus sp. SR1/5] Length = 318 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 112/297 (37%), Gaps = 33/297 (11%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I VR ++R L ++ VSGG+DS+ +L L S+ + F + V H + Sbjct: 2 ITRVRKYIRDNRMLKAEDMVVAGVSGGADSIAMLHILKSLQKEIGF---SMEVVHVHHGI 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R + A + ++V +C I H V + K + G R R E K + Sbjct: 59 RGQEADRDEQFVEKICRDWGIPFRSRHYPVPELSGKWKLGEEETGRIVRKQAFQEEKKRL 118 Query: 118 NAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + + AH +D ET+ R +G+ + + ++ I R Sbjct: 119 GFSGEQSKKNGQFRVALAHNRNDLAETMLHHLARGTGIRGL-------SGIQAVSGEIIR 171 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDL 226 P L R++I ++L +R IS+ D SN D + R R+R + + K + + Sbjct: 172 PVLCLERKEIVNYLKERGISYITDSSNLSDNYTRNRIRNHILPAMEQKINAKAVEHMAET 231 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQI 279 + A + L K + + + D L Y + + I G+ Sbjct: 232 ARVLAEADSYLQKKGRELLAGCRKENGYLLDEKFFAQDPILQEYAVMEAFEILSGKR 288 >gi|260587360|ref|ZP_05853273.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583] gi|260542227|gb|EEX22796.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583] Length = 451 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 118/317 (37%), Gaps = 26/317 (8%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V F + + + +H++V +SGG+DS+ L + + + + A+ V+H +R Sbjct: 5 EKVFFCIEKYQMIPKNSHVIVGLSGGADSVC---LLKLLKEYKKQQEFQLYAVHVNHHIR 61 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI- 117 E A + + VC +L + +V + + + L A R R + K I Sbjct: 62 GEEAVRDEEFSKAVCKKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKVMKNIK 121 Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AH +D ETV R G+G + RP L +R Sbjct: 122 VSGRKMIALAHHENDNAETVLHNLMRGSGAAGLGGI----RPVSGEKDSYIRPLLFVKRA 177 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHA---LYLKMKKFQDLRV 228 +I +L + ISW D +N + + R ++R + +I+ A + + + Sbjct: 178 EIEKYLKGQGISWVTDSTNEETEYTRNKIRHQIIPVMEEINPQAVSCIGRAAENMWKIEE 237 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + +L KY+ I+++ + + YL+ +E Sbjct: 238 YLQEQTDILYRKYVKKT-GDTFCIAKECFSEKEIMQSYLIMRVLEQASKGKKNITATHIE 296 Query: 289 RVMLFLKSGKRGCVSIG 305 V K VS+ Sbjct: 297 AVRRLFKGRTGASVSLA 313 >gi|291542480|emb|CBL15590.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus bromii L2-63] Length = 442 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 127/336 (37%), Gaps = 24/336 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L ++VA+SGG+DS LL S+ + A ++H +R + A + + Sbjct: 15 LEKGDSVIVALSGGADSTALLSVFVSLKEK---YNLSIYAAHINHNIRGDEATRDENFCK 71 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C + + S + + R RYA E ++ + I TAHT D Sbjct: 72 ILCKKFNTELFIKSVDVPTLAKQQKISEELCGRNVRYAFFEELSQKL-CAKIATAHTASD 130 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET+ R + G+ + + I RP + R DI S+ + N+ + Sbjct: 131 NAETLIFNIARGASLTGL-------SAIPPKRGNIIRPLIELSRGDIESYCEENNLEYVT 183 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNNAVAMLIPKYLTVHM 246 D +N D + R +R + L L ++ + + + + K + Sbjct: 184 DSTNLADDYTRNYIRHNIIPC-LKKLNPSFERTALGLSENAGESADFIKECAEKAVHDCK 242 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + +L++DS +L +L + P +++ + +++G +S R Sbjct: 243 GDFGYDCKKLLSLDSAVLKEML--FILLKNNCNISPERKTILLLCEIIRNGGSVELSKQR 300 Query: 307 VVIDRRANFLWIT-RAVRNLPTLILYPEETTVWDGR 341 + ++ ++ + + + L T +DG+ Sbjct: 301 TAVSKQGILRFVCPKNSPDFNEIPLKNNMTFSYDGK 336 >gi|253581056|ref|ZP_04858317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847719|gb|EES75688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 485 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 25/322 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72 R + +L VSGGSDSM +L L + F + + H +R A + + Sbjct: 13 RMIGKNDVVLAGVSGGSDSMAMLRILKELQGKLDF---TLRVVHIHHGIRGKEADRDQSF 69 Query: 73 VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINAT----LIMT 124 V ++C + +I +V + + + G R R A I Sbjct: 70 VENICRKWQIPCTVYCYDVPGLSREWKLGEEETGRIVRKEAFQREAAVCGRKDSEIKIAL 129 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH +D ET+ R +G+ + ++ I RP L R+ I +L ++ Sbjct: 130 AHNQEDLAETMLHNLCRGTGLRGL-------CTMRPVDGEIIRPILCLSRDKIAEYLKEK 182 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 IS +D +N D + R R+R + + + K + + + + Sbjct: 183 KISHIQDSTNLSDEYTRNRIRHNILPMLERQVNGKAAAHMAETAARISQAEEYLTQQSCL 242 Query: 245 HMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + ++ + Y L+ + G+ E+V+ + Sbjct: 243 VLSEFQKGKGYYFTEKFFMEPQIIQVYALQQAMEQLAGRRKDLAAVHYEKVLELYEMQTG 302 Query: 300 GCVSI-GRVVIDRRANFLWITR 320 +S+ + R + + R Sbjct: 303 RRISLPYHMEARRDYEGVRLCR 324 >gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9] gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9] Length = 351 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + AVSGG+DS+ +L+ + + + SA+ V+H LR + + +V+ Sbjct: 9 LKVGERVCCAVSGGADSVAMLLLVCAANGGSKGLGLGVSAVHVNHGLRGAESDGDEGFVA 68 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C L + ++ V+ + + + AARE RY A +++TAHT DD Sbjct: 69 ALCEGLGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVVLTAHTLDD 128 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV M+ R +G+G G+ + + RP L RR ++ FL + W E Sbjct: 129 QAETVLMKLLRGAWTEGLG--GISPVVEVP-GGRVVRPVLGVRRGELVEFLKAKGQGWRE 185 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 D SN D+ F R R+R V + + +L A Sbjct: 186 DSSNADEAFTRNRLRHTVMPVLRAENPSVDRTLANLAEVAREEEARW 232 >gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1] gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1] Length = 436 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 74/351 (21%), Positives = 133/351 (37%), Gaps = 46/351 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I F++ + +L+A+SGG DS+ L L+ + + + LR Sbjct: 7 KHIAENLPFLKQ----SKLLIAISGGLDSVVLANLLYKL-------DFSIAFAHCNFQLR 55 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E + ++ +V + + L+ + ++ + + AAR RY E A Sbjct: 56 GEESNEDEVFVKTLGNSLKAGVFTKKFNTETYANEQKLSIQMAARALRYEWFQEIADKFQ 115 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I+TAH DD LET + R G+ T + N I RP L + DI Sbjct: 116 YDYILTAHHQDDMLETFLINLSRGTGIDGL-------TGIPQQNGNIVRPLLPFTQVDIL 168 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN------ 232 ++ N+ W ED SN ++ R ++R + + MK FQ + + Sbjct: 169 AYAKNNNLLWREDSSNASTKYVRNKIRHDIVPLLKELHPTFMKNFQATQQHLQESNSIIK 228 Query: 233 -AVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSME 288 A+ L + +T +I + + LF LLR G+ + Sbjct: 229 DAIQKLQAEIITEVSDGNYSIEIEAIQQQKFPKAYLFELLRDF-----------GFHEWQ 277 Query: 289 RV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 V +L +SGK+ + R++ DR F+ + ++ E+ + Sbjct: 278 DVKDLLNAQSGKQVFSAKYRLIKDRTQLFIQKRNQKEEVSEFLIQDSESII 328 >gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D] gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D] Length = 430 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 13/271 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 15 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 72 CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 + R R+R FV D L +F + + +L K + H + Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK-IRYHKLLNGIVQ 248 Query: 254 QDILNIDSTLLFYLLRVSAAIC----GGQIS 280 + +++ L + G Q+ Sbjct: 249 VNAVDLSDFNCHQLSLYFNWLIDKEWGRQVY 279 >gi|288904236|ref|YP_003429457.1| hypothetical protein GALLO_0013 [Streptococcus gallolyticus UCN34] gi|325977213|ref|YP_004286929.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730961|emb|CBI12505.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34] gi|325177141|emb|CBZ47185.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 421 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I+ +F + +L+AVSGG DSM LL L+ R +I+ ++H R+ Sbjct: 9 IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E Y+ + + +I V + AAR+ RY + N T ++TA Sbjct: 62 SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ET++MR R + LSGM + + RPFL ++D+ Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQAVSSFGTG-ELIRPFLTIPKKDLPE------ 168 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I ED SN + R R+R L +L + KF+ + L + Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224 Query: 246 MRSIIAISQDILNIDSTLLFYL 267 + L + + L Sbjct: 225 AEIDVTDCSQFLAQTTAVQTVL 246 >gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 448 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 26/305 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E RFF SL P ++VAVS G DSM LL L S+LS + V+H LR Sbjct: 13 LERYRFF--SLKQP--LVVAVSTGVDSMTLLHVLGSLLSAD-----QLVVAHVNHHLRAQ 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E +++ C ++ + V W+N PQ G+ AAR+ RY ++ A ++TA Sbjct: 64 SQQEEQFLRQQCQQMGVRLYVDQWEN-HPQHGIENAARQERYRFFAKVMHETKAAYLLTA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D ET+ M+ R G+ + + N + RP LR ++ + + Sbjct: 123 HHENDLAETMLMKLLRTG--DATATVGIREARPFA-NGQLLRPLLRVTKKSLVEYARVHQ 179 Query: 186 ISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + W ED +N +D R RVR + L + +L ++ V+ L+ Sbjct: 180 LKWYEDATNQEDMTLRNRVRHHYLPEWERENPRVVDHLLKFHDQLTELLTMKDDIVSQLM 239 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + + I + Q + I LL+ + + + ++ FL + + Sbjct: 240 TRIVHNGQLDITSYQQQVPVIRHCLLYRWVNDQGMFALQE------QRSHQIDQFLCNQQ 293 Query: 299 RGCVS 303 + Sbjct: 294 SPSST 298 >gi|94310033|ref|YP_583243.1| tRNA(Ile)-lysidine synthetase-like protein [Cupriavidus metallidurans CH34] gi|93353885|gb|ABF07974.1| tRNA(Ile)-lysidine synthetase [Cupriavidus metallidurans CH34] Length = 487 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 127/317 (40%), Gaps = 11/317 (3%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VA+SGG DS+ LL A L+ ++ + A+ V H L+ A D R+ + C Sbjct: 46 QPVTVAVALSGGRDSVALLHATREALAA-TWPLARLVALHVHHGLQAQADDWDRFCTARC 104 Query: 78 SRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L++ S + G+ AAAR AR+ + + A L++ AH DDQ+ETV Sbjct: 105 GDLQVPLSSARVTVQAATGEGIEAAARRARHEALGRMCREQGARLLLFAHHRDDQVETVL 164 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R R GM + ++ + RP+L R +I + + + W +DPSN D Sbjct: 165 LRLFRGTGVAGMAGMPARRPLDERGDIQLVRPWLGVTRAEIDDYCAWQGLRWIDDPSNAD 224 Query: 197 DRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 RF R +R + + ALY + + + + L + L + + Sbjct: 225 TRFARNALRAQLPALLQAFPALYENVAQAATHFAQAAGMLDALAAQSLASLVCAGRDADT 284 Query: 254 ------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + + S +LR G Q + R L G ++ + Sbjct: 285 ISELDLAGLRALPSEHADAVLRHWLRDLGTQSPSTARLAAMRAQLIQHQGGEPAIAHDGL 344 Query: 308 VIDRRANFLWITRAVRN 324 V+ R + L AV Sbjct: 345 VLRRFRDRLLACPAVSA 361 >gi|78189702|ref|YP_380040.1| MesJ protein [Chlorobium chlorochromatii CaD3] gi|78171901|gb|ABB28997.1| MesJ protein [Chlorobium chlorochromatii CaD3] Length = 354 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 128/335 (38%), Gaps = 35/335 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FL + R R +L+AVSGG DSM LL +V F + + + Sbjct: 36 QFLEQLTKRRLVQR----GDKVLLAVSGGPDSMALLSLFCAVQP---FLQCSLALAHCNF 88 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAK 115 LR+ + + +V + + + V ++ + L +AR RYA + Sbjct: 89 QLRDSESDSDEAFVQEQATARNLPCFVERFETRNVAATWKKSLEESARLLRYAFFERLMQ 148 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + T H +D ET+ R + G+ + + I RP L + Sbjct: 149 VHGFHKVATGHHVNDNAETILFNLVRGTSLLGL-------RGIRAQHGTIIRPMLLLHKP 201 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVN 231 I ++L ++ I + D SN ++R +R + + L +++ + ++ Sbjct: 202 AITTYLHEQQIPYRVDSSNEGTEYDRNFIRHRLIPLIEERFPRKLLPSLQRLSEQAGELE 261 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYR 285 + + + ++ + + LN+ + +++ + G + + Sbjct: 262 EFLELYFEQLT--QREPLLQLHNNQLNVKALRQLTTFEQKEIIKRALWELGAPV---DGQ 316 Query: 286 SMERVMLFLKSGKRGCVSIGRVV-IDRRANFLWIT 319 +++R++ L++ V +GR ++ + N L+ + Sbjct: 317 TLQRMVELLQTQSGRMVQLGRKWQVEWKGNSLYFS 351 >gi|317133212|ref|YP_004092526.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3] gi|315471191|gb|ADU27795.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3] Length = 457 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 20/285 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +L A SGG+DS LL L ++ R ++ A ++H LR E A + +V Sbjct: 13 LAPGDAVLAAFSGGADSTALLHLLCAL---REEWGLRVFAAHLNHGLRGEEADRDEAFVR 69 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C + V V + ++ R RYA +E A+ + A I TAHT D Sbjct: 70 ARCVEWGVPCFVRRTDVRAEAARTGESEELCGRRLRYAFFAEQAEALGA-KIATAHTLSD 128 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + R G GL+G+ N I RP + R ++ + +++ Sbjct: 129 SVETMLLNLAR-----GTGLAGLRGIPPVRGN--IVRPLIETTRAEVEVYCAAHGLNYVT 181 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D +N + R R+R V L AL +++ +++ ++ +R+ Sbjct: 182 DSTNFSRAYGRNRIRLDVVP-ALRALNPALERTLARDMRLFARDEAVLEDLTASLLRAAA 240 Query: 251 A---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + ++L L +A G + R+ME+++ Sbjct: 241 VPGGFAAEVLRASPLCARALAAAAAQTTGLRPEAVHVRAMEQLLR 285 >gi|307266280|ref|ZP_07547821.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918730|gb|EFN48963.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1] Length = 458 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M I +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R E AK + ++V D+C +L++ V + A R RY E + Sbjct: 57 MIRGEEAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLR 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + RE Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +++ ++++ D +N +D ++R +VR + + +Y K + Sbjct: 170 EIENYIKEKDLKPVIDFTNYEDLYKRNKVRLKLIPYINETFEVDIIENIYRMAKIILEEN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLRAQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|313500224|gb|ADR61590.1| TRNA(Ile)-lysidine synthase [Pseudomonas putida BIRD-1] Length = 427 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 88/216 (40%), Gaps = 8/216 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL L R+ AI + H L+ A + +C + Sbjct: 15 VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAR+ARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASLEQAARDARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ T+ + RP L C R+ ++ + + ++W EDPSN D +F R Sbjct: 130 GLRGLAAMPGQRTL---GQGRLVRPLLACSRQHLQDYAQAQGLTWIEDPSNLDIQFARNY 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +R V + F + A+++L Sbjct: 187 LRGEVMPHLQQRWPQASQNFARAAEHLGEALSLLDE 222 >gi|225869500|ref|YP_002745447.1| PP-loop family protein [Streptococcus equi subsp. equi 4047] gi|254789048|sp|C0MAT4|TILS_STRE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225698904|emb|CAW91895.1| PP-loop family protein [Streptococcus equi subsp. equi 4047] Length = 427 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 21/292 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM LL LH+ + +I+ V+H R + DE Y+ + Sbjct: 22 VLIAVSGGVDSMNLLHFLHAFQAKL---QIRIGIAHVNHKQRPESDDEEAYLRSWAKKHA 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I V ++ + AAR RY E + + + ++TAH DDQ ET+ MR R Sbjct: 79 IPIYVAYFQGAFS----ENAARHLRYQFFEEIMQQEHYSALVTAHHADDQAETILMRLIR 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L+G+ + + N + RPFL + ++ N ED SN + R Sbjct: 135 GSRLR--HLAGIREVQPFA-NGQLIRPFLTVSKAELP------NPFHFEDHSNDSMAYFR 185 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 RVR L + + + ++ +L+ + + L + Sbjct: 186 NRVRHH----YLPDFKRENPQATQSLIDLSAESRLLLQAFDDLTKGLEFHRLNCFLAQSA 241 Query: 262 TLLFYLLRVSAAICGG-QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + F+LL+ I + + ++ K G + ++I++ Sbjct: 242 AVQFFLLQHYLETFPQLAIKKSQFDDLLHIIRRQKQGIYPIKNTYCLLIEKE 293 >gi|56477787|ref|YP_159376.1| ATPase [Aromatoleum aromaticum EbN1] gi|61216414|sp|Q5P2I9|TILS_AZOSE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56313830|emb|CAI08475.1| tRNA(Ile)-lysidine synthetase [Aromatoleum aromaticum EbN1] Length = 423 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 111/319 (34%), Gaps = 17/319 (5%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA SGG+DS LL L + R A V H L A + + + C+ L Sbjct: 12 RLCVAFSGGADSTTLLHLLARL---RPRFGFDLCAAHVHHALSPNADAWLDFCARQCAAL 68 Query: 81 RIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A + ++ GL AAARE R+A +S ++ H DDQ ET+ R Sbjct: 69 DVAFHPFREQVARDHPAGLEAAAREVRHAALSRVT----CDWLVFGHHQDDQAETLLFRL 124 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G + RP L RR DIR+F ++ W ED SN D R Sbjct: 125 LRGAGVRGAAAMAAIEPGFPGR----LRPLLGVRRADIRAFAQAASLEWIEDESNADPRH 180 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL 257 R +R V + A + A +L + + +L Sbjct: 181 ARNFLRHHVFPLFGEAFPGAVPALARASGHFREADGLLGDLAALDYAACGGSPWLRDRLL 240 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVIDRRANFL 316 + + LLR G P + + L++ + +G + L Sbjct: 241 MLSDERVRNLLRWRIRQMG--CEAPARARLVEAVRQLRATHAPLYLPLGTAACCTYRDRL 298 Query: 317 WITRAVRNLPTLILYPEET 335 W+ P L + Sbjct: 299 WLEPQRDGAPEQPLPWRQE 317 >gi|326391164|ref|ZP_08212709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325992797|gb|EGD51244.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 458 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M I +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R E AK + ++V D+C +L++ V + A R RY E + Sbjct: 57 MIRGEEAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLR 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + RE Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +++ ++++ D +N +D ++R +VR + + +Y K + Sbjct: 170 EIENYIKEKDLKPIIDFTNYEDLYKRNKVRLKLIPYINETFEVDIIENIYRMAKIILEEN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLRAQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|21282193|ref|NP_645281.1| hypothetical protein MW0464 [Staphylococcus aureus subsp. aureus MW2] gi|49485373|ref|YP_042594.1| hypothetical protein SAS0466 [Staphylococcus aureus subsp. aureus MSSA476] gi|297207388|ref|ZP_06923827.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910347|ref|ZP_07127800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH70] gi|61217254|sp|Q6GBX9|TILS_STAAS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217380|sp|Q8NXZ4|TILS_STAAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21203629|dbj|BAB94329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49243816|emb|CAG42241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887951|gb|EFH26845.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300888336|gb|EFK83523.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus aureus subsp. aureus TCH70] Length = 431 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEVYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKASHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q N+ ++L +L Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266 >gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325] gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325] Length = 439 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 20/268 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I +A+SGG DS+ L L + + + ++H LRE + +E +V Sbjct: 9 KEDKIAIALSGGVDSIVLFHLLVT---EYKDSYKELVVFHINHGLREESYEEAGFVEKFV 65 Query: 78 SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + S + T ARE RY ++ AK T ++TAH +DQ+E Sbjct: 66 KDFDVKFYKEELNMSDLERDSHTSEEMLARELRYQAFNKMAKLEGVTKLLTAHHKNDQVE 125 Query: 134 TVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + MR + + + + L I RP L + ++ + ++N+ + D Sbjct: 126 NILMRLLTGRSIDHSLAICEEIEMA----GLNIYRPLLNSLKAELEEYAKEKNLHYYVDA 181 Query: 193 SNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 +N D + R +R + + L +Q++ + + Y+ Sbjct: 182 TNFDTDYTRNNIRHNIVPLLNDINSGSFDNLINFANYYQNINNNLKKTILSKKDNYIFSR 241 Query: 246 MRSIIAISQD-ILNIDSTLLFYLLRVSA 272 + I++ +D L ++ +++LL+ Sbjct: 242 DKDKISLVKDKFLELNEEEMYFLLKDLI 269 >gi|227486467|ref|ZP_03916783.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172] gi|227235648|gb|EEI85663.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172] Length = 454 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 131/342 (38%), Gaps = 26/342 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++V SGG DS L+ L + ++ I ++H R+ A + V Sbjct: 17 LSEGDTVIVGASGGPDSQFLIHILDKL---KNKLGIDIVLAHLNHLHRKEASKDEDLVRQ 73 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + S + + A R RY ++ +K + I AH DDQ Sbjct: 74 TAEKLGLKFYSRSRSMDELAKELKISSEDAGRRLRYEFFNDLSKKFPISKIAVAHNKDDQ 133 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET MR R G+ + N I RP L ++++I ++L I++ D Sbjct: 134 AETALMRIIRGTGLDGL-------RAMDYKNGNIIRPILNIKKKEILAYLDSNEIAYAID 186 Query: 192 PSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +N ++ + R ++R + + A++ +D + +V + V Sbjct: 187 HTNFENDYTRNKIRLDIIPILEEINPNVVDAVFKLSDLARDDLAILEKSVDSKFDEMSKV 246 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I D LL +LR + + G+I +++ L +K+ G I Sbjct: 247 KHGKIYFDKDHFEKTDPALLRRILRKAVGVLKGEIKDLSKENLDD-FLKIKNLATGKSLI 305 Query: 305 GRVVIDRRANFLW----ITRAVRNLPTLILYPEETTVWDGRY 342 + R++ + +T A ++ L LY ++ +DG Y Sbjct: 306 KDDISLRKSYEAYVLEILTPAEKSKTDLYLYDKDQVHFDGIY 347 >gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386] gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386] Length = 442 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 14/221 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+A SGG DS+ L ++ R ++ + V+H LRE A +++++V + Sbjct: 20 LKKNDKVLIAFSGGPDSVFLFHCINFF---RESLGLELELVYVNHKLREDADEDIKFVKE 76 Query: 76 VCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + + V + + A RE RY + + K N I T H DD Sbjct: 77 FAEKYEVRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKIATGHNLDDN 136 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET R R A G+ + I RP L R++ I L + + D Sbjct: 137 IETFIFRLLRGTALNGL-------KGIPVKRGAIIRPILEFRKDYILEVLDGADEEYRLD 189 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +N + ++ R ++R + + L +K L ++NN Sbjct: 190 STNFETKYTRNKIRNLIFPLFSEVNPLFREKIAGLIEEINN 230 >gi|254491662|ref|ZP_05104841.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxidans DMS010] gi|224463140|gb|EEF79410.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxydans DMS010] Length = 441 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 133/356 (37%), Gaps = 26/356 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +P + + ++ LV + +A SGG DS LL L + + AI VDH Sbjct: 1 MAFNPQQIIVDLIK-LVAGRPVCIAYSGGVDSHVLLHLLA---NTQHPQLTSIRAIYVDH 56 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 L + + + V + I ++ GL AAAR+ARY S Sbjct: 57 GLHAESDKWRDHCASVSKSIDIKFESLTVTVENIDNLGLEAAARQARYQAFSSALFEN-- 114 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++TA DQ ET+ ++ R G+ G T+ + I RP L + DI Sbjct: 115 EVLVTAQHQQDQAETLMLQLLRGSGPSGLSAMGRESTM---KGMTILRPLLGLSKADILD 171 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + +SW EDPSN D R +R V +L + + + K +L+ Sbjct: 172 YAQLHQLSWIEDPSNADLTLNRNYLRHQVFP-NLESRWPAVAKTMSRTADHCREATVLLQ 230 Query: 240 KYLTVHMRSIIAISQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML- 292 + + + + +IL+I LLR S C ++LP ++RV+ Sbjct: 231 ELAQLDAQRVCIEPPNILSISALTGLSEPRQRNLLRFSIEQC--DLNLPSTVVLQRVIDE 288 Query: 293 --FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY----PEETTVWDGRY 342 K V I R + L I L E + DGR+ Sbjct: 289 VCSAAEDKSPHVHWPGAEIRRYRDQLIIQAVKTTNTELTEQHIEGASELELTDGRW 344 >gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 455 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 41/345 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 I VAVSGGSDSM LL + + + S I V+H +R +++K + +V + C Sbjct: 25 KRIAVAVSGGSDSMALLWLMLNCWPN------DISVIHVEHGIRGDSSKADACFVKEHCK 78 Query: 79 RLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +L I ++S L AAR R+ ++ A+ I + + H DD +ET Sbjct: 79 KLDIPCFILSRDVPVEAMKGESLEQAARRIRHEALASKAEEIGSDFVALGHNSDDTVETF 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G+ + ++ RP L R+++R L + W ED SN Sbjct: 139 FLNLARGSGAYGLA-------GIPEVRDRFVRPVLEVSRDELRELLKEVGWGWVEDESNQ 191 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMR 247 +D + R R+R V + + + +++ DLR + L + Sbjct: 192 EDLYLRNRIRHEVLPLLENRINRGVRRHVLSLIEEMSDLRKEEERTAFDLARSLFSFMPW 251 Query: 248 SIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 S+ ++ + ++++ +L R G + E + L+ R Sbjct: 252 SLYSLDRSGVMDLSKRHRIWLFRHVGRELG--LRTLSRHRTEILSDLLERSSRWRFQWSE 309 Query: 307 VV--IDRRANFLWITRAV---RNLPTLILYP--------EETTVW 338 V + + +W+T+ PT+ L P E W Sbjct: 310 DVELCCCKDHLIWLTKESLEESPSPTIFLSPPRGESEWSGEEITW 354 >gi|160902337|ref|YP_001567918.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95] gi|189035968|sp|A9BJK2|TILS_PETMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|160359981|gb|ABX31595.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95] Length = 311 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 133/327 (40%), Gaps = 27/327 (8%) Query: 1 MFLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 M L E + F+R IL+ VSGG DSM LL + + F + S Sbjct: 1 MILQDFEKKIFKFIRDYKIFNKYDKILLGVSGGKDSMSLLHVMSKLSKTMGF---EISVA 57 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112 ++HC+RE A ++ +V C +L+I K + G+ A R+ RY E Sbjct: 58 HLNHCMREEADNDEAFVRQACWKLKIPFFSKKVDVFTYSKKNKVGVEVAGRKLRYEFFYE 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + ++ I TAH DD ET+ R R G+G + I++P L Sbjct: 118 TLRRLSYNKIATAHHMDDLFETMIYRILRGTGIYGLGGLIPIEE-------EITKPMLCV 170 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 E+I++++ NI + ED N + R ++R + + + F L + + Sbjct: 171 DLEEIKNYVTINNIEYVEDKYNYSLDYARNKIRYEITPLFKKINPRYKESFFRLAKIIWS 230 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM 291 + K+ RS I+ L +++ ++R++ G P E+++ Sbjct: 231 YREEVKRKF---EERSEISKDSLKLRLENDFFDGEIIRIAFLKFGK--YPPNMEETEKII 285 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWI 318 K G R I + I ++++ L + Sbjct: 286 KMRKGGVRK---INGLSITKKSDSLLV 309 >gi|61216758|sp|Q9ZGE2|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis] Length = 470 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 21/314 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 I++A+SGG+DS+ LL+ V I+ +A +H +R + ++ +V+++ +R Sbjct: 23 RIVIALSGGADSVCLLLLFKKVSPQ---FGIELAAAHYNHGMRGKESDEDAAFVAELTNR 79 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L++ + + W +P T + AAR RY +S A+ A I AH DD ETV Sbjct: 80 LQVPLFLETAPLKWWQQEPGTKME-AARRLRYDFLSRSAEQAGARWIALAHHADDMAETV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R KG+ + + RP L RR+++ FL W D SN Sbjct: 139 LFHMLRGSGIKGL-------SGIPAKRGPFVRPLLPFRRKELEEFLKAEGQHWRHDSSND 191 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D + R R+R + L ++ + L + V+ + + Sbjct: 192 SDVYTRNRIRHQIMPALLSFNPKLVETLCRNADLLRADAEFLDRECELVY--GQVQQEEG 249 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCV-SIGRVVIDRR 312 + L LR + PG + ++ L+ G+ V +G + Sbjct: 250 LKVQALVDLPLALRRRVLRRFLEPENPGSEKTDAILEQLQKNFGRSKIVDQVGGKYLINE 309 Query: 313 ANFLWITRAVRNLP 326 L + L Sbjct: 310 GGILRSYEELPWLE 323 >gi|313889520|ref|ZP_07823166.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN 20026] gi|313122132|gb|EFR45225.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN 20026] Length = 427 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 25/295 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 + F ++ +L+AVSGG DSM LL LH+ KI + V+H R+ + E Sbjct: 13 KAFFKN---HKKVLIAVSGGVDSMNLLHFLHTFKDQ---FKISIAIAHVNHKQRKASDLE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 Y+ ++ I V +K + AR+ RY T ++TAH D Sbjct: 67 EDYLKSWANQHDIPIFVDYFKGNFS----EQRARDFRYQFFKRIMSQGGYTALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ETV+MR R + L+G+ + + + RPFL ++ + Sbjct: 123 DQVETVFMRLIRGSLLR--HLAGIKEVQPFA-GGQLIRPFLHFHKKTLP------QPFHF 173 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED SN + R RVR F L L + K + + + A L + Sbjct: 174 EDSSNLGLDYFRNRVRNF----YLKELEKENPKLSESLLALAEESATLFAALADLTNHID 229 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + + L ++ FYLL + + ++ V+ L+ + G + Sbjct: 230 VTDRKTFLEQTDSVQFYLL--QNYLAKFDDLFLSRKQVKEVLHILRVKEEGKFFL 282 >gi|186940996|dbj|BAG31126.1| putative cell cycle protein [Xanthomonas perforans 91-118] Length = 450 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+A SGG DS LL L + R G F A+ V H L A + C Sbjct: 29 PPGPVLLAYSGGMDSSVLLHLLAATPRYRHAG---FRALHVHHGLHADADAWAAHCQRTC 85 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ +V + ++ +GL A + + AH DDQ ET + Sbjct: 86 DTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLL 144 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R +G+ + + RP L R D+ ++ + + W EDPSN D Sbjct: 145 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAQGLRWIEDPSNADP 201 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254 R +R +R V + +A A+L+ + + + + A+ Sbjct: 202 RHDRNFLRSQVVPLLQQRWPQAPDALARSAQLSADASALLLQQDMALLPSVRTASGALDL 261 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L L + LP ++ER + + ++ C + +V + R Sbjct: 262 QALRAQPVERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVRRW 321 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 +L++ R P+ + WDG + +++ + P Sbjct: 322 RQYLFLHRHAAAWPS-----DWHAQWDGAAPLHLPDGAQLRLLGAPGLRFAQP 369 >gi|297620920|ref|YP_003709057.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044] gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU 86-1044] Length = 438 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 128/341 (37%), Gaps = 17/341 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F R + A +L+A SGG DSM LL + S ++F VDH R+ + DE Sbjct: 11 FLKRCTPFNAPVLIACSGGPDSMALLRMMVEYRKTHS---VRFGVAHVDHRWRKESADEA 67 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +C + + + Q L A R R + +M H DD Sbjct: 68 ETLRALCREIDVPFHLKEIDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV R + G GM + +Y+ + RPFL+ R++ + ++L RN + Sbjct: 128 QAETVLKRVFEGAKLEKCG--GMQEISVYET-IPFWRPFLQVRKQKLIAWLNLRNFPYFI 184 Query: 191 DPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 DP+N D F R ++R + + + + + I K+L + Sbjct: 185 DPTNNDSSFLRSKIRGNILPEISRYFGKEVSPGLAFLGREAHALKEFMGSHIYKWLALKE 244 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 ++ D+ + + LF + + + Y + E ++ C G Sbjct: 245 KTPWGTVLDLSCQNPSHLFEARCLISELLPQASREIAYSAAENLIGGA---ANKCYHAGG 301 Query: 307 VVIDRRANFLWIT-RAVRNLP---TLILYPEETTVWDGRYQ 343 + +++T R +LP T + W+ R Q Sbjct: 302 KTLYIDRKRMFLTERLHADLPHQETSLKKCGSIGSWNYRIQ 342 >gi|325955979|ref|YP_004286589.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC] gi|325332544|gb|ADZ06452.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC] Length = 423 Score = 200 bits (509), Expect = 4e-49, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 13/252 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + LVA S G DSM LL L + K++ A DH LR +K+E + + + Sbjct: 23 LNNKKFLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEY 75 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I W K+ +P G+ AAAR+ARYA +++ AK A ++TAH DD LE + Sbjct: 76 CKKYDIPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENI 135 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M + + + RP L ++++ + + I + D +N Sbjct: 136 LLKFIRSGNPEEMNSLQAVGVM---HGVSLLRPLLAYSKQELFEYDRKNGIEFITDSTNN 192 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +D R R+R V + + + K+ N + I + + + + Sbjct: 193 EDETMRNRLRHHVVPLLKKENPALIANALNYSKKMTN-LDEFIDQKVD-DIGQLTPFLGQ 250 Query: 256 ILNIDSTLLFYL 267 I S L L Sbjct: 251 AYRIKSEKLTAL 262 >gi|289579227|ref|YP_003477854.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9] gi|289528940|gb|ADD03292.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9] Length = 464 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 127/308 (41%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M I +V+ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVISTVKRY-KMIKENDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R E A+ + ++V ++C +L++ V + A R RY E K Sbjct: 57 MIRGEEARRDAQFVENICCKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + R+ Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGAGMTGL-------IGIKPVNGNIIRPLIEIERK 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK-- 229 +I +L ++ + D +N +D ++R +VR F+ + + + + + ++ Sbjct: 170 EIEIYLKEKGLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIKNIYRMAKIILEEN 229 Query: 230 --VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIEKLRVQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|315037515|ref|YP_004031083.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112] gi|312275648|gb|ADQ58288.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112] gi|327182811|gb|AEA31258.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1118] Length = 423 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 13/252 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + LVA S G DSM LL L + K++ A DH LR +K+E + + + Sbjct: 23 LNNKKFLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEY 75 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + I W K+ +P G+ AAAR+ARYA +++ AK A ++TAH DD LE + Sbjct: 76 CKKYDIPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENI 135 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M + + + RP L ++++ + + I + D +N Sbjct: 136 LLKFIRSGNPEEMNSLQAVGVM---HGVSLLRPLLAYSKQELFEYDRKNGIEFITDSTNN 192 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +D R R+R V + + + K+ N + I + + + + Sbjct: 193 EDETMRNRLRHHVVPLLKKENPALIANALNYSKKMTN-LDEFIDQKVD-DIGQLTPFLGQ 250 Query: 256 ILNIDSTLLFYL 267 I S L L Sbjct: 251 AYRIKSEKLTAL 262 >gi|146329382|ref|YP_001209278.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A] gi|146232852|gb|ABQ13830.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A] Length = 415 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 67/353 (18%), Positives = 131/353 (37%), Gaps = 15/353 (4%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M ++ +E + F ++ P L+A SGG DS+ LL AL+ + S + ++H Sbjct: 1 MNINQLE-LLFQWQTQTNPTAYLLACSGGRDSIALLHALYQQKTQLSAP---LEIVYINH 56 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + A V+ + + VS + A AR+ARY ++ Sbjct: 57 GWHQDAAKWGELVATRAAAYGFSFRSVSLHLKATK-NAEAVARKARYQAFAQLLPVNG-- 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DDQ ET+ + R G+ + + + RP+L R +I + Sbjct: 114 VLLTAHHQDDQAETLLLNLCRGSGLDGLSAMPLRRSFAAGEH---WRPWLLHARAEIEDY 170 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L + +++ +D SNTD R++R +R V + + +++ A Sbjct: 171 LKSQQLTFVDDSSNTDTRYQRNWLRHQVLPLLETRFPAIRAQLAQTSAQLSAARHFQEHC 230 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + L+ L + + + LP R ++ + L + + Sbjct: 231 LYAYLPAPEQPFTMETLSA-VPSSSRALLIRYWLRQRHLPLPPRRRLQEFIDQLDNAEHA 289 Query: 301 CVSIG-RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352 + R + R+ + P + E T W G S + + Sbjct: 290 QIEYADRCLFRYRSEIYNVATEPPAPPPIFA---EQTHWHGIGTLTLQSGAAL 339 >gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814] gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814] Length = 473 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 22/348 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I +AVSGGSDS+GLL A+++DH +R A E YV +C Sbjct: 56 KRIGIAVSGGSDSLGLLCLSAEWAK---LNNWHLQALTIDHGMRPEAAQEAVYVQSICET 112 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L I H+ ++W+ + Q AR AR+ L E AK N +M HT DD+LET+ +R Sbjct: 113 LNIPHTTMNWRCPQDQRATQENARMARHLLFCEWAKRQNIQFLMLGHTLDDRLETLLIRE 172 Query: 140 QRDYAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +E G+ +L + RP R+D+ + L++ +ISW DPSN D Sbjct: 173 SSNSSEYGLAAMPSQSCSPIWPEGRDLKLLRPANNLTRQDLSAILIETDISWVCDPSNQD 232 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAIS 253 D++ERVR+R+ + + ++K + L +K V L + ++ + + Sbjct: 233 DKYERVRIRKKLEAMPQQVKQKSIEKLKKLTLKRQKLVTDLTYFLKNHVVWRADGSVELR 292 Query: 254 QDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IGRVVI 309 L + L R+ + G + ++ R + + + K G ++ +G+ + Sbjct: 293 LSDLFKHPLDIQNKALERILICVSGSKQNVGLSRVISLLNALNVNTKSGKITHCLGKCWL 352 Query: 310 DRRANFLWI---------TRAVRNLPTLILYPEETTVWDGRYQFQNLS 348 + + L I T+ ++ + + GR+ + Sbjct: 353 IKTEDTLQIYAMPTKRATTKNSPQTTRSVIKSSQKICYMGRFDIRLSP 400 >gi|167032176|ref|YP_001667407.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1] gi|166858664|gb|ABY97071.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1] Length = 427 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 85/398 (21%), Positives = 136/398 (34%), Gaps = 41/398 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L R+ AI V H L+ A + +C L I Sbjct: 15 IAYSGGLDSTVLLHLLADYA--RNHASPPLRAIHVHHGLQTAADAWPAHCQAICDNLGIE 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P + AAR+ARYA + ++ T DDQ ET+ R R Sbjct: 73 LQVIHVQVS-PGASVEQAARDARYAAFKQTL--GPGDILFTGQHRDDQAETLLFRLLRGA 129 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L C R+ ++ + ++W EDPSNTD F R Sbjct: 130 GLRGLAAMPGQRAL---GQGSLARPLLGCARQQLQDYASAHRLAWIEDPSNTDTHFARNY 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A+ +L R+ + S Sbjct: 187 LRGEVFPRLQQRWPQASQNLARAAEHLGEALGLLDELAQADLARAQEGAPAAWSALPSLG 246 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L L +S + + LP R + + + S+ + R Sbjct: 247 LAALATLSPSRQRNALQYWLSQRTRLPDTRHWAGWADLRDAGADAQPVWSLADGRLLRSQ 306 Query: 314 NFLWITR-----------AVRNLPTLILYPEETTV-------WDGRYQFQNLSDSLIQIG 355 +W A + +L P +V DG L +++I Sbjct: 307 GRVWWLSGDWLKTPIGQLAWADPDEPLLLPGNGSVRLVGAGQLDGLRIAYRLGGEMLEIP 366 Query: 356 PQSYR--KADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + R K + P + S +P G+ LLA Sbjct: 367 GRGRRDLKRLLNEQQVPHFLR---SRLPLLYRGERLLA 401 >gi|82750216|ref|YP_415957.1| hypothetical protein SAB0458 [Staphylococcus aureus RF122] gi|82655747|emb|CAI80146.1| conserved hypothetical protein [Staphylococcus aureus RF122] Length = 431 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 19/252 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 GHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S-IIAISQDILN 258 S + +S+ N Sbjct: 244 SKYLEVSRQAFN 255 >gi|317056314|ref|YP_004104781.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7] gi|315448583|gb|ADU22147.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7] Length = 444 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 134/401 (33%), Gaps = 48/401 (11%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + VR + +L+ +SGG+DS LL+ LH + A Sbjct: 1 MKSDLSDRVRRTIEKYHMAEKGERLLIGLSGGADSAALLLCLHEL-------GYDICACH 53 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112 V+HC+R E A + + ++C L I +V AR RY + Sbjct: 54 VNHCIRGEEADRDQHFCEELCKGLNIDITVKVVDVPAYCRANPVSEEEGARLLRYKAL-- 111 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + INA I TAH DD LET R KG+ + + I RP + C Sbjct: 112 --QEINADKICTAHNLDDCLETTLFNLARGSGLKGIA-------SIPPVRENIIRPLIEC 162 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-------D 225 R DI ++L ++ S+ D +N D + R ++R V + M F + Sbjct: 163 SRADIEAYLFEKGQSFVTDSTNLLDEYSRNKLRHKVVPVMREINPSLMDTFANTLGFLRE 222 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + + + S I + I ++ +L Sbjct: 223 DSRFLEKMSDDAFAEAVYNDGFSCKMIRKLDYPIRRRVIMRILAKYDVEV-------SQD 275 Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR 341 +E + + +G + V +++ L+I +L + E W GR Sbjct: 276 KIEMIEHLICNGGKISVK-SNCFAYTKSDTLYIYSENSDLKICSDDQVKVSEGVIYWQGR 334 Query: 342 ---YQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379 ++ + + + I +I R + Sbjct: 335 NIEFRIIEIDGKFENVNKKFANSCLDYDKIKGVIVLRKRRA 375 >gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059] Length = 425 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 30/348 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLLIDSQKEL---DIELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIKNVQVFHQQIPQIQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345 ++ +V D + + I+R IL E + G Y+F Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327 >gi|306834613|ref|ZP_07467725.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338] gi|304423249|gb|EFM26403.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338] Length = 421 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I+ +F + +L+AVSGG DSM LL L+ R +I+ ++H R+ Sbjct: 9 IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ E Y+ + + +I V + AAR+ RY + N T ++TA Sbjct: 62 SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ET++MR R + LSGM + + RPFL ++++ Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQGVSSF-CTGELIRPFLTISKKNLPE------ 168 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I ED SN + R R+R L +L + KF+ + L + Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224 Query: 246 MRSIIAISQDILNIDSTLLFYL 267 + L + + L Sbjct: 225 AEIDVTDCSQFLAQTTAVQAVL 246 >gi|167627656|ref|YP_001678156.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189035967|sp|B0TYH9|TILS_FRAP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|167597657|gb|ABZ87655.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 400 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 15/281 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L + + + P+HI++ SGG DS LL + I AI ++H Sbjct: 1 MSLDKTQIISQILNH--SPSHIIIGYSGGVDSSVLLDITKDL-------DIPTIAIYINH 51 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + A + +C+ I S + A A + R E ++ Sbjct: 52 NIHPDALKWQLHCQTICNNANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSP 111 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ H DDQ ET +++ R G+ + + + RP L ++DI+ + Sbjct: 112 ILLLGHHLDDQAETFLIQAIRGSGLAGLASMPYYKQLNHGA---VLRPLLDYTKKDIQDY 168 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAML 237 Q I+ D SN + ++ R +R + I + + + + + +N + L Sbjct: 169 ASQNKINHIYDDSNENIKYRRNLIRNQIMPILEQINPNISRTLSRSAKICAESSNILQKL 228 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 + + L ++ I ++L++D + L+ Q Sbjct: 229 LNEKLQKISQNNSLIISELLSLDKDIQKSLIHHWFKETTNQ 269 >gi|313123084|ref|YP_004033343.1| tRNA(ile)-lysidine synthetase, mesj [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279647|gb|ADQ60366.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 431 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 14/320 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL + + G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W K+ P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYEGVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LE + ++ R + + + + RP L + D+ ++ ++ + + Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED +N R R+R+ V + ++ ++ + Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQAAGKLPEPEP 242 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 I L++ + ++R++L + + G + + Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297 Query: 310 DRRANFLWITRAVRNLPTLI 329 W+ + P+ + Sbjct: 298 SFYQGHYWLYPVKQPAPSPL 317 >gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 806 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 26/341 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV + VA+SGG+DS+ L + L L + AI+VDH LR +++E YV Sbjct: 115 HKLVGQYPLAVALSGGADSLTLTLLLDEYLRECEQKAASLLAITVDHQLRAESREEAEYV 174 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 +C IAH + S ++ + AR+ RY+ + + ++ + Sbjct: 175 HKICEERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLEHKCRKVSVKYL 234 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178 HT DDQ ET+ R R G+ + ++++ RP L + ++ Sbjct: 235 FVGHTLDDQEETILYRLARGSGVNGLAGMDPITKWFWNEEMGEHIYLIRPLLSVPKSRLQ 294 Query: 179 SFLLQR-NISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKV 230 +QR + W EDPSN D F+RVR+R+ + I +L + + + Sbjct: 295 QTCMQRFHQDWIEDPSNHSDTFDRVRIRKVMAMIRGDSGEGAFDSLLPLQQIATEAKKNF 354 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + K++T S + + + L++ +L G + P + S+ +V Sbjct: 355 RKLENKALEKHITEWSPSRVTLDVAFQDGYEELIYRVLIRILCYVGKKEHPPRHSSVSKV 414 Query: 291 MLFLKSGK-RGCVSIGRVVIDR--RANFLWITRAVRNLPTL 328 + L ++I V+ + + L R + Sbjct: 415 LHDLDQLTCGKQITIHGCVVKKVEKGRLLCFQPEHRRTESF 455 >gi|302390905|ref|YP_003826725.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501] gi|302202982|gb|ADL11660.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501] Length = 466 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 127/325 (39%), Gaps = 26/325 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L ++V+VSGG DS+ LL L + D +K +DH R E ++ + YV+ Sbjct: 15 LSEGDKVIVSVSGGPDSLALLHILWRLQDD---YNLKLHVFHLDHMFRGEESQKDAEYVA 71 Query: 75 DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L I ++ + + AAAR+ RY L +E A ++ A I DD Sbjct: 72 QFANKLSIPATIEEYDIPAYIEETGLSNQAAARKIRYELCTELADSLKADKIAIGQQADD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV M R G LSG+ N RP L R+DI + Q + Sbjct: 132 QAETVLMNFLRGAGLDG--LSGIEPIR----NGIFIRPLLEVWRKDIGDYCKQHELEPRI 185 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPK-----Y 241 D SN + R +VR + +K + ++ N+ + + Sbjct: 186 DSSNLKPVYLRNKVRLELVPYLAEEFNSSIKENLVRMAEIFRVENSFMEKYTAEKYDQLV 245 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300 + + + +I + I ++D + + R + G + +++++ +G+ G Sbjct: 246 IESNTQELILDLEGIKDLDLAIQRRIFRQALLDFCGTKRDYYTKHIQQMVELSINGETGN 305 Query: 301 --CVSIGRVVIDRRANFLWITRAVR 323 + G + + RA + Sbjct: 306 LLQLPQGLRLKRSYNRLKFYWRADK 330 >gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d] gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d] Length = 418 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 8/227 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I++A+S G DSM LL + ++ D + + VDHCLR + E ++ Sbjct: 3 LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + ++ W P GL AAAR+ RY ++ + A + TAH DD E + Sbjct: 60 CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R + M + + + N + RP L +E++ + +R +++ D +N + Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 177 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + R R+R FV D L +F + + +L K Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK 224 >gi|253700218|ref|YP_003021407.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21] gi|251775068|gb|ACT17649.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21] Length = 457 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 142/400 (35%), Gaps = 39/400 (9%) Query: 2 FLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + VR ++L P ++VAVSGG+DS+ LL + + + ++H Sbjct: 1 MKTLVTKVRN--QNLFRPGETVVVAVSGGADSVALLDLMTRL-----ECGLHLVVAHLNH 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115 CLR + + +V+ + + S + + + L A R ARY + + A Sbjct: 54 CLRGAESDADEAFVASLAGNYHLPFVSQSCDVADLARRERLSLEDAGRRARYGFLEQTAA 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A+ I AH DDQ ETV +R R G GL+ M T + RP L+ R Sbjct: 114 QFGASSIALAHHQDDQAETVLIRLLRGSG--GTGLAAMAGTS----GERLKRPLLQVSRA 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 + +L QR +++ D +N D R +R + + ++ + Sbjct: 168 KLEQYLKQRGLTFRTDSTNADTAILRNSIRHELIPLLRRYNPKVSERLAATAEILAGDEE 227 Query: 236 ML------IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI-CGGQISLPGYRSME 288 +L + L V + + L + L L A G + G +E Sbjct: 228 LLDGLTKAAYQRLAVAEGGQVRFEVEPLMKEPRALRLRLYRRALTELRGDLMRIGLAHLE 287 Query: 289 RVMLFLKSGKRG--CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 + L S + G + R + + RA P+ E+ GRY Sbjct: 288 AIDLLAASTRPNAEATLPGACRVSRCYGVISLGRAAPQAPS---SWEQVVTGVGRYPLPG 344 Query: 347 LSDSLIQIGPQS--------YRKADVPSGIPPIIAQRALS 378 ++Q P+ + P +P R Sbjct: 345 GGVFVVQRLPRPESLDTGSRWSAFLSPEAVPFPWLLRGFR 384 >gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 485 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 123/332 (37%), Gaps = 27/332 (8%) Query: 4 SPIESVRFFV--RSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 + VR FV L+ P H+ AVSGG+DSM LL L ++ + F SA V Sbjct: 5 KILAHVRMFVLREKLLCPGEPLHLAAAVSGGADSMALLRILLALQPEFGFV---LSACHV 61 Query: 59 DHCLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALIS 111 +H LR A + +V C+RL + V + GL AR RYA + Sbjct: 62 NHGLRGETADRDEAFVRAECARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFA 121 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + TAHT +DQ ET+ +R R G + RP L Sbjct: 122 RLCGE-GIDDVATAHTANDQAETLLLRLARGTGLHGAA-------GIRPKRGCYLRPLLA 173 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R+D SF +W D +N D + R RVRR ++ K Sbjct: 174 LTRQDTESFCRAAGQAWVTDETNATDAYARNRVRRAALPALQSTNGAAVENLARFCEKAA 233 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 A A K + + + +Q + + L +A +L +M + Sbjct: 234 RADAYFARKAEELLSAARLDAAQAAIKSPEACTVWRLDPLSA----ADALILEAAMHSLT 289 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323 ++ + V + ++ R + + +T VR Sbjct: 290 APVRDAEEKYVQLLCGLVRRGSGAVQLTDRVR 321 >gi|197119017|ref|YP_002139444.1| tRNA(Ile) lysidine-34 synthase [Geobacter bemidjiensis Bem] gi|197088377|gb|ACH39648.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter bemidjiensis Bem] Length = 457 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 28/342 (8%) Query: 2 FLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + VR ++L P ++VAVSGG+DS+ LL + + ++ ++H Sbjct: 1 MKTLVTKVRN--QNLFQPGETVVVAVSGGADSVALLDIMTRL-----ECGLRLVVAHLNH 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115 CLR + + +V+ + + S + + + L A R ARYA + + A+ Sbjct: 54 CLRGAESDADQAFVASLADNYHLPFVSQSCDVADLARRERLSLEDAGRRARYAFLEQTAE 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A I AH DDQ ETV +R R G GLS M T + RP L+ R Sbjct: 114 QYGAFSIALAHHQDDQAETVLIRLLRGSG--GTGLSAMAGTA----GDKLKRPLLQVSRV 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 + +L QR +S+ D +N D R +R + + ++ + Sbjct: 168 KLEQYLKQRELSYRTDSTNADTAILRNSIRHELIPLLRRYNPKVSERLAATAEILAGDEE 227 Query: 236 ML------IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI-CGGQISLPGYRSME 288 +L + L + + L + L L A G + G +E Sbjct: 228 LLEGLTQAAYQRLASAEGGQVRFQVEPLMKEPRALRLRLYRRALTELRGDLMRIGLAHLE 287 Query: 289 RVMLFLKSGKRG--CVSIGRVVIDRRANFLWITRAVRNLPTL 328 + L S + G + R L + A P L Sbjct: 288 AIDLLAASPRPNAEATLPGACRVSRCYGSLSLGHAAAQAPPL 329 >gi|319757185|gb|ADV69127.1| ATPase [Streptococcus suis JS14] Length = 422 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 23/291 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL FF + +LVAVSGG DSM L L+ + I+ ++H Sbjct: 5 FLKVTLDGHFFDKH----KKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE + E +Y+ + + + ++ AAR+ RY + + T Sbjct: 58 QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LS + T + + RP L ++ D Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED SN D ++ R RVR +L V NN L Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQALRDLT 224 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + +++ Q + S LL L + Q+S P + + ++ Sbjct: 225 QDLSVTDVMSFQQQAPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272 >gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00] gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Lawsonia intracellularis PHE/MN1-00] Length = 341 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 19/240 (7%) Query: 10 RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 RF +L ++V SGG DSM L + LH + I +DH LR +K Sbjct: 26 RFLEENLSQNIQGTVIVGCSGGVDSMALALILHCL-------GIDVVFAHMDHQLRAESK 78 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIM 123 D+ +V + L + S K + G+ AR+ RY + + K A I Sbjct: 79 DDANHVKSFAAALDRRCIISRVDISGLAIKYKKGIEETARQERYCFLEQVRKEYGAQWIA 138 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H +D E + +R R G G G+ D ++ RP L RR + SFL Sbjct: 139 TGHHLNDLSEDILLRLLR-----GTGWPGLAGMKAVDKKRYLLRPLLTTRRTLLVSFLSS 193 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 +NISW ED SN D F+R R+R + + K + + K +T Sbjct: 194 QNISWVEDNSNKDITFKRNRIRHTILPLFEEE-NPKFSNVAHMLWSLAKEDEEFWDKMIT 252 >gi|34498644|ref|NP_902859.1| cell cycle protein [Chromobacterium violaceum ATCC 12472] gi|61216591|sp|Q7NT72|TILS_CHRVO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34104497|gb|AAQ60855.1| cell cycle protein [Chromobacterium violaceum ATCC 12472] Length = 435 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 141/374 (37%), Gaps = 26/374 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ LL L + R +I SA+ V H L A + +C LR+ Sbjct: 21 VGFSGGLDSVALLSLLCEARARR--PEIGLSAVHVHHGLSPNADAWAAHCQALCDSLRVP 78 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + + AAAREARY + A +I AH DDQ ET+ ++ R Sbjct: 79 LRIERVHVRAGGGESVEAAAREARYQVYRRSASE----VIALAHHQDDQAETILLQLLRG 134 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + L+ M + RP L RE + +++ R +W +D SN D R+ R Sbjct: 135 GGAR--ALAAMPALRELAPGKLLWRPLLEIPRERLEAYVKARGFAWVDDESNLDTRYRRN 192 Query: 203 RVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R + L + + L+ + + + L +L + Sbjct: 193 LLRHDILPRLERALPHYRSHLARAAMLQADAAAILDEVAREDLQACRTENGLDCGSVLAL 252 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 + L G PG ++ FL+ + V+ R+ L Sbjct: 253 SAPRRRQTLLAWLDALGWPAPEPG-----ALLEFLRQAEYAERGASPVLRLRQGCLLRFA 307 Query: 320 RAVRNLPTLILYPEETT--VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRAL 377 ++ P P +T +W G Q+LS+ ++ + + D +G+P + + Sbjct: 308 DTLQAWPKAQSEPPASTALLWRG-GDAQSLSEWGGELA---WERRD--AGVPAALLESGA 361 Query: 378 SSMPSKEGGKPLLA 391 P + GG+ L A Sbjct: 362 YLAP-RRGGEKLSA 374 >gi|323442047|gb|EGA99682.1| hypothetical protein SAO46_2006 [Staphylococcus aureus O46] Length = 431 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q ++ ++L +L Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266 >gi|323438741|gb|EGA96481.1| hypothetical protein SAO11_2434 [Staphylococcus aureus O11] Length = 431 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI+VAVS G DSM LL +L+D K + + V+H +R + +E R++ C Sbjct: 11 DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCE 67 Query: 79 RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 R I + S + AR RY E + A +++TAH DDQLET+ Sbjct: 68 RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127 Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R + + +G D + I RP L +++I+ F + +I + ED SN Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183 Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247 D+++ R +R + + LK+K++ D + + + I +++ + Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243 Query: 248 S--IIAISQDILNIDSTLLFYLL 268 S + Q ++ ++L +L Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266 >gi|308048686|ref|YP_003912252.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799] gi|307630876|gb|ADN75178.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799] Length = 446 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 123/317 (38%), Gaps = 28/317 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L IL+A SGG DS L + L + + I + H L A + + Sbjct: 21 HLATTGRILLAYSGGVDSELLAVCLARWAGQCASPPVSL--IHIHHGLSAYADQWAGHCA 78 Query: 75 DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + VV+ + + P+ + A+AR+ARY A+ L++TAH DDQ E Sbjct: 79 ARAKALDLPIEVVAVQLQRGPRISIEASARQARYDAFR--ARLGPNDLLLTAHHLDDQAE 136 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ + +R +G+ + + RP+L RR +I + Q + ED S Sbjct: 137 SLLLALKRGSGPRGLSAMAAQQAL---GQGRMVRPWLGLRRAEIEAAAAQLGVEHIEDDS 193 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHM 246 N D RF+R +R V L L + F V+ A L L H Sbjct: 194 NADTRFDRNFLRHQV----LPQLNQRWPGFSQAVVRSAALCAEQQQLCDELAEADLLTHQ 249 Query: 247 RSIIAISQDILNIDST-----LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 R A+S L S LL + LR A+ Q+ + + + + + Sbjct: 250 RDDGALSVTALAALSAPRRNNLLRFWLRQQGALMPSQLQMAAMAPLWQ----AREDAQPQ 305 Query: 302 VSIGRVVIDRRANFLWI 318 + G + R + L++ Sbjct: 306 LDWGEHSLRRFRDGLYL 322 >gi|114332355|ref|YP_748577.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91] gi|114309369|gb|ABI60612.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91] Length = 418 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 111/292 (38%), Gaps = 18/292 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL L + SAI V+H + + + +C + I S+ K S Sbjct: 1 MVLLHLLIKFSK---LMPLDVSAIHVEHGISTYSGQWSAFCQTLCDSVAIPLSIHRLKIS 57 Query: 93 K-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 K PQ L A AREARY + + I A ++ A DDQ+ET+ ++ R KG+ Sbjct: 58 KQPQESLEAVAREARYQIF----RQIQADYVLLAQHQDDQVETLLLQLLRGAGVKGLSAM 113 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + RP L R +I + +SW D SN D ++R +R + + Sbjct: 114 PTVRLFESGKAIKLLRPLLNVPRSEIMKYAKLHGLSWVTDESNLDVSYDRNFLRHRILPL 173 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYL 267 + Y +K + A L+ + + + + + + L +D L Sbjct: 174 -IEQRYPSYRKILSRSARHLGEAAHLLDELAKIDAENTMIVDKLSLRGLRELDLARAGNL 232 Query: 268 LRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANFL 316 LR A + LP +E ++ L ++ + + I + Sbjct: 233 LRYLLA--QQMVRLPSSAKLEEILRQLHNIQADTHFQFEVDALEIRCYRGLI 282 >gi|269926166|ref|YP_003322789.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269789826|gb|ACZ41967.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 442 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 130/322 (40%), Gaps = 26/322 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG+DS+ L L+ + RS I S DH LR + D+ ++ + + Sbjct: 2 ILGLSGGADSIALFHVLYEL---RSILGINISVAHFDHRLRPESSDQASQLAKYIEQFDV 58 Query: 83 AHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 V+ + + + AR+ RY ++ A+ NA L+ AH DQ ET + Sbjct: 59 NFYLGSADVAGAALQAKASIEDTARKYRYDFLAACARKENA-LVCVAHNQQDQAETFLLN 117 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ D + + ++ + RPFL EDIR++ ++ EDPSN Sbjct: 118 LARGTGLDGLCGMLPIDRVPGNPDVELVRPFLGIAHEDIRNYCRLNSLPVIEDPSNLSLD 177 Query: 199 FERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 F R ++R V A + L Q + +++ + ++ + I Sbjct: 178 FTRNKIRHLVLPALKQANQEVVKHIALTTSILQQEKRLLDSRALDFLAQHSIIRHNFISV 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 ++N +L+ L+++ + G G R +E + L +S + + + Sbjct: 238 ELVAVMNSPRSLIIRALKMALSQAFGSDEGFGARHLEALYLLARSKSGNSIDLPGGI--- 294 Query: 312 RANFLWITRAVRNLPTLILYPE 333 RA++ LI++ Sbjct: 295 --------RAIKAPQALIVWAG 308 >gi|146317675|ref|YP_001197387.1| ATPase [Streptococcus suis 05ZYH33] gi|146319865|ref|YP_001199576.1| ATPase [Streptococcus suis 98HAH33] gi|253750936|ref|YP_003024077.1| PP-loop family protein [Streptococcus suis SC84] gi|253752835|ref|YP_003025975.1| PP-loop family protein [Streptococcus suis P1/7] gi|253754660|ref|YP_003027800.1| PP-loop family protein [Streptococcus suis BM407] gi|145688481|gb|ABP88987.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus suis 05ZYH33] gi|145690671|gb|ABP91176.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus suis 98HAH33] gi|251815225|emb|CAZ50789.1| PP-loop family protein [Streptococcus suis SC84] gi|251817124|emb|CAZ54845.1| PP-loop family protein [Streptococcus suis BM407] gi|251819080|emb|CAR44104.1| PP-loop family protein [Streptococcus suis P1/7] gi|292557477|gb|ADE30478.1| PP loop-containing protein [Streptococcus suis GZ1] Length = 422 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 23/291 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL FF + +LVAVSGG DSM L L+ + I+ ++H Sbjct: 5 FLKVTLDGHFFDKH----KKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE + E +Y+ + + + ++ AAR+ RY + + T Sbjct: 58 QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LS + T + + RP L ++ D Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED SN D ++ R RVR +L V NN L Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQALRDLT 224 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + +++ Q + S LL L + Q+S P + + ++ Sbjct: 225 QDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272 >gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] Length = 528 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 30/336 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + L +L AVSGG DS+ LL L + D +DH LR + Sbjct: 11 ARFKEALARLCPEGRLLAAVSGGGDSVALLYLLKAAGRDT-------IVAHLDHALRPDS 63 Query: 67 KDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +V + RL H V + + L AAARE RYA ++ A+ A I Sbjct: 64 AADAAFVEKLAQRLGFPLETEHVDVRALAHRKRINLEAAAREVRYAFLARVARRWKARCI 123 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DD ETV ++ R +G+G+ + ++RP L R ++R++L Sbjct: 124 LTAHTLDDNAETVLLQILRGAG-RGLGIRPLQR--------RVARPLLEFSRAELRAYLE 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239 R W EDP+N +R +R V + +F + + A+ L Sbjct: 175 ARGARWLEDPTNRSLELDRNYLRHAVLPRITARFPHALEALARFSQAQQADDWALEALSA 234 Query: 240 KYLTVHMRSIIAISQDIL--NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 ++L R + + + L +R G + +E + G Sbjct: 235 RHLIPDRRWPVPAYRALPLERAPEALRRRAIRGVLEALGVRPEARLVADVEAAL-----G 289 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 R G VV+ R+ L+ P + Sbjct: 290 GRAQTLPGGVVVRRQRGTLFFIPPTVRFPKVQPPAG 325 >gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599] gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599] Length = 475 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 126/326 (38%), Gaps = 22/326 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L+ ++V +SGG+DS LL L S+ + + K A+ ++H R E A+ + Y Sbjct: 15 LLPGESVVVGISGGNDSTALLHILASLNKQYQY-QWKLHAVHLNHGFRGEEARQDALYAE 73 Query: 75 DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++C L + V K G A+R+ RY L E AT + AH DD Sbjct: 74 ELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLALAHHADD 133 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWC 189 Q+ET+ R R G L+GM + D + + RP L R+++ + + + Sbjct: 134 QVETILFRFVRGSRLNG--LTGMPKRRMLADCPIELVRPLLHKTRQELEGYCREHQLVPR 191 Query: 190 EDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 ED SN ++ R +R V + H L QD + + A L Sbjct: 192 EDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQDEALLMRLANEQLKKVM 251 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + + + D L ++ + + + +E V+ L G R Sbjct: 252 IEKKPEAFLMDNDKFQTCDVALQRRMITLILSYLSKHTEW-SSQHVETVLHML-GGSRPS 309 Query: 302 VSIG---RVVIDRRANFLWITRAVRN 324 + +V+DR + R R Sbjct: 310 AELHLPNDLVVDRVYERITFRRRKRQ 335 >gi|330997932|ref|ZP_08321766.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT 11841] gi|329569536|gb|EGG51306.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT 11841] Length = 450 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 115/320 (35%), Gaps = 38/320 (11%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 LV P ILVA+SGG+DS+ LL+ L A+ + LR E + + + Sbjct: 18 HQLVGPDDKILVALSGGADSVALLLVLQQ-------AGFHCEAVHCNFHLRGEESDRDEK 70 Query: 72 YVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V D+C I + + + + AARE RY E I AH Sbjct: 71 FVRDLCRSRSIRLHTKDFDTAAYARQKGISIEMAARELRYGYFEELRADWRFDKIAVAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + R KG+ T + N ++ RP L R++I +L + Sbjct: 131 RDDNVETLLLHLVRGTGLKGL-------TGMRYHNGYVIRPMLDTNRKEIERYLAGKGQP 183 Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + D +N + R ++R + V L L ++ +D N AV L + Sbjct: 184 YVTDSTNLETEAVRNKIRLEFLPMLKTVNPSILDTLQGTIRHLEDAYTLYNMAVEDLKAR 243 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 I A+ + T+LF LL E V L Sbjct: 244 ICRNDRIDIQALK--AVPAARTVLFELL---------SAYGFNSVQAEEVFDHLDGCSGK 292 Query: 301 CVSIGRVVIDRRANFLWITR 320 + R L ++R Sbjct: 293 VYESHEWRLLRDRKTLVLSR 312 >gi|77918602|ref|YP_356417.1| cell cycle protein [Pelobacter carbinolicus DSM 2380] gi|77544685|gb|ABA88247.1| cell cycle protein [Pelobacter carbinolicus DSM 2380] Length = 458 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 122/329 (37%), Gaps = 24/329 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG+DSM LL L V ++ A +DH +R + D+ +V+ C R Sbjct: 21 ILVGLSGGADSMVLLDVLLHVADSL---QLAILAAHLDHGMRPESADDAAFVARFCRRRD 77 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +V V + + GL AAREAR + + A+ I H +DQ+ET Sbjct: 78 VPLTVGHRDVPALARQHKQGLEEAAREARREFLQQTARVEGCRFIALGHHRNDQVETFLH 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + + RP L R+DI ++L I ED SN D Sbjct: 138 RLLRGSGLSGLAGMRL-------RSGPFIRPLLSFSRQDILAYLDDHQIPHVEDASNADT 190 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAMLIPKYLTVHMRSII 250 F R R+R + + L ++ V + + Sbjct: 191 VFTRNRLRHELLPRLRDFNPRIEEHLARLSRRIAVEEDYWTEQVDAYLESSCEEGDDGLW 250 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIGRVVI 309 Q + + L +LR + G + G + + + L + + + V Sbjct: 251 LSRQGLTGLHPALRSRVLRGALLRLRGDLRGIGAKHLASLDDLLDAPRSEAEAHLPGVWA 310 Query: 310 DRRANFLWITRAVRNLPT--LILYPEETT 336 RR LW+ A PT ++ P Sbjct: 311 ARRYERLWLRTAPPPDPTDFAVVVPGPGV 339 >gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6] gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6] Length = 355 Score = 199 bits (506), Expect = 8e-49, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 98/272 (36%), Gaps = 24/272 (8%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +V F++ V P H++VA SGG+DS L + L + + +DH LR Sbjct: 35 AVGRFLKEKCGVSPHHVIVAFSGGADSTALAVILRCL-------GVSLVLAHLDHRLRPE 87 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121 + +E RL + V GL A R ARYA + A Sbjct: 88 SGEEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEW 147 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD E V MR R G+G D + RP L R ++ +FL Sbjct: 148 VVTGHHLDDLSEDVLMRLVRGSGWPGLGGMKAVDPARR-----LLRPLLGTPRAELEAFL 202 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + W ED SN D F R R+R V + L + F + + Sbjct: 203 RSLGVDWIEDASNRSDAFRRNRMRNHVIPL----LKAENPSFSRSTRTLWELAREDEHYW 258 Query: 242 LTVHMRSIIAISQD--ILNIDSTLLFYLLRVS 271 V + ++ L + L R + Sbjct: 259 NEVLAPVFAQLREENGSLLLPRAAFVSLPRAA 290 >gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str. Jelinkova 176] gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str. Jelinkova 176] Length = 427 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 28/314 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 + F ++ +L+AVSGG DSM LL LH+ I + V+H R+ ++ E Sbjct: 13 KAFFKN---HKKVLIAVSGGVDSMNLLHFLHTFKRQL---DISIAIAHVNHKQRKESELE 66 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 Y+ + I + +K + AR+ RY + T ++TAH D Sbjct: 67 EDYLKKWAEQHDIPIFIDYFKGNFS----EQRARDFRYQFFKRIMVQGDYTALVTAHHAD 122 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ETV+MR R + L+G+ + + + RPFL + D+ N Sbjct: 123 DQVETVFMRLIRGSLLRY--LAGIKEVQPF-SGGQLIRPFLHFHKNDLP------NPYHF 173 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED SN + R RVR F L L + K + + + L + Sbjct: 174 EDSSNLGLDYFRNRVRNF----YLKELERENPKLSESILALAEESETLFIALADLTNHID 229 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GR 306 + + L ++ FYLL + + ++ V+ L++ +G + Sbjct: 230 VTDRKIFLEQTDSVQFYLL--QNYLAKFDDLFLSRKQVKEVLHILRAKGQGEFFLKNNYE 287 Query: 307 VVIDRRANFLWITR 320 +VI + R Sbjct: 288 LVITSNQFHIRKIR 301 >gi|326336198|ref|ZP_08202370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691707|gb|EGD33674.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 439 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 19/240 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 ++ I++A+SGG DS+ L L + I F + LR E ++ + +V Sbjct: 15 FLWQKRIILAISGGIDSVVLAYLLKELQ-------IPFLMAHCNFQLRGEESEGDQHFVE 67 Query: 75 DVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +L + V + + AAR RY + + I+TAH +D Sbjct: 68 ALAQKLSMPLEVKRFATKEYGKTHALNTQLAARVLRYEWFEQIRQKKGYDYILTAHQAND 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET + + R KG+ + N I RP L RE+I +F + NI W E Sbjct: 128 SWETFLINTSRGTGLKGLLGVPVQ-------NNTILRPLLGFSREEILAFAKENNIIWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D + R ++R + I +K + + + + + + + I Sbjct: 181 DSSNNSDAYTRNKIRHHISPILSQIHPNFLKNLEKTQHILQLTYSFIEEQLEKYRKKCFI 240 >gi|299536712|ref|ZP_07050022.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1] gi|298727826|gb|EFI68391.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1] Length = 468 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 14/261 (5%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 V+ F+ L H+L+AVSGG DSM LL H + + I+ A+ VDH LR Sbjct: 6 KVKAFIEEEQLLQQGDHLLIAVSGGVDSMALL---HYFIQTQEQWNIQVEAVHVDHMLRG 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 E + ++ +V C + + ++ R RY E + NA Sbjct: 63 EASSEDRAFVQKYCDANSVYLHAKEIPIPTILAQENGNTQLICRRERYQFFKEVLQKTNA 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DDQLE+V M ++ + G+ ++ + RPFL + +I Sbjct: 123 NKLVTAHHADDQLESVLMALTKNATMN--SMQGIRPQRIFG-GKSLIRPFLTVTKSEIGE 179 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +LL++ + + ED SN+ D + R R R V + ++ ++ L+ Sbjct: 180 YLLRKGLDYREDASNSKDTYVRNRFRHHVVPLLQAENPRVTEQVTHFTKQLQEDDTFLMT 239 Query: 240 KYLTVHMRSIIAISQDILNID 260 V + II +++ ++ Sbjct: 240 LAQDVFSQIIIRNNENTYRME 260 >gi|51894334|ref|YP_077025.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863] gi|61217236|sp|Q67JG9|TILS_SYMTH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51858023|dbj|BAD42181.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863] Length = 482 Score = 199 bits (506), Expect = 9e-49, Method: Composition-based stats. Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 52/404 (12%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR +V L ++VAVSGG DS+ L L+ + ++ +DH L Sbjct: 4 LDRVREYVVRHGMLEPGDRVIVAVSGGPDSLALTHVLYRLAPA---WRLSLHLFHLDHGL 60 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTIN 118 R E ++ + +V+D+ L + + V+ + + + L AR RYA ++ A I Sbjct: 61 RGEASRADAAFVADLARELSLPLTTVTLRPGELEAMRGSLEDNARRRRYAEMARLAAAIG 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A T H +DQ ETV MR R GL+G+ + + L I RP L R++I Sbjct: 121 AQRAATGHNRNDQAETVLMRLLRGSGS--TGLAGIP-PVRREGGLTIIRPLLGASRQEIL 177 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAV 234 ++ ++ D +N FER R+R + A+ + + DL + + + Sbjct: 178 AYCRAHGLTPRMDATNLQGDFERNRIRLEILPALTERFGDAVVDNLAQTADLLREEDRLL 237 Query: 235 AMLIPKYLT---------VHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGY 284 A L + ++ + +L + L ++R++ G PG Sbjct: 238 AELTREACARCGWRETGEATGEPVVELDGTLLVQEPLALARRIVRMAVQRVSGSAYGPGL 297 Query: 285 RSMERVM-----------LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 ++ R + L L G R V+ GR R L + P Sbjct: 298 SAVTRALELAGRTEGSHWLDLPQGVRLSVAYGRCRFARSHPQLGPGAEALEQVWPVAVPG 357 Query: 334 ETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRAL 377 ET + +G + PS +P + + Sbjct: 358 ETAIP--------------ALGVTVAAELVPPSAMPARLPDDEM 387 >gi|332703890|ref|ZP_08423978.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis Bay] gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis Bay] Length = 340 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 77/314 (24%), Positives = 119/314 (37%), Gaps = 23/314 (7%) Query: 8 SVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V F+R + +LVA+SGG+DS LL L + I A VDH LR Sbjct: 20 RVERFIRKDLGLDLKGKRLLVALSGGADSTALLYCLRYLAPRMC---ISLLAAHVDHGLR 76 Query: 64 ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + + Y ++C+ + VS + G+ A R ARY + NA Sbjct: 77 PESGQDAAYCRELCAAQNVPLYEAKLDVSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNA 136 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 L++TAH +D E MR R G G + YD + RP L ++R Sbjct: 137 DLLLTAHHLNDLAEDALMRLIR-----GTGWPELAGMPAYDPQRNLLRPLLLTPGTNLRE 191 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 FL SW EDPSNTD F R RVR + + L ++ L + Sbjct: 192 FLTNIGASWREDPSNTDPAFLRNRVRLDILPLFLRENPNFLESMARLWRIAELDRQFFLE 251 Query: 240 KYLTVHM------RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVML 292 + + + +L + + + + A+ GQ+ ++ +L Sbjct: 252 FKTKLDISYDAGGKQFSVPLDALLALHPAIRLRIYKTLLDALASGQVLWKNLLRLDEAVL 311 Query: 293 FLKSGKRGCVSIGR 306 +SG R G+ Sbjct: 312 ARRSGSRVQFPGGK 325 >gi|21243487|ref|NP_643069.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306] gi|61217385|sp|Q8PIY5|TILS_XANAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|21109046|gb|AAM37605.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306] Length = 440 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 128/353 (36%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+A SGG DS LL L + R G A+ V H L A + C Sbjct: 19 PPGPVLLAYSGGMDSSVLLHLLAARPRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 75 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ +V + ++ +GL A + I + AH DDQ ET + Sbjct: 76 DALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLL 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R +G+ + + RP L R D+ ++ + W +DPSNTD Sbjct: 135 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAHRLRWIDDPSNTDP 191 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254 R +R +R V + +A A+L+ + + + + A+ Sbjct: 192 RHDRNFLRSQVLPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPGVLTASGALDL 251 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L S L + LP + ++E+ + + + C + +V + R Sbjct: 252 QALRAQSVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVRRW 311 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ R P+ + WDG Q + +++ + P Sbjct: 312 RQCLFLHRPAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 359 >gi|154499603|ref|ZP_02037641.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC 29799] gi|150271681|gb|EDM98925.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC 29799] Length = 458 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 91/424 (21%), Positives = 156/424 (36%), Gaps = 62/424 (14%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +L AVSGG+DS+ LH + R A +HCLR E + + +V Sbjct: 15 LPRGGTVLCAVSGGADSV---YLLHRLWLLRDILGFNLIAAHYNHCLRGEESDRDEAFVR 71 Query: 75 DVCSRL----------------RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114 D ++ + V V+ + + GL AR+ RYA + + A Sbjct: 72 DFVAKWCGPQRFDGPEGEHTLPAVELVVGRGDVAAEAERQGRGLEETARDMRYAFLRDTA 131 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + I TAHT DD ET+ + R G GL GM + + RP L R Sbjct: 132 QRLGCDRIATAHTADDNAETLLLHLIR-----GTGLQGMAGIAPRRGD--LVRPMLTTTR 184 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN--- 231 ++ +L +I ED SN+D RF R R+RR V + +++ D + Sbjct: 185 REVEEYLELYSIPHVEDSSNSDQRFTRNRIRRQVVPLLEELNPGFVRRMTDTTRYLRADN 244 Query: 232 ---NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 NA A + + ++ + + + + + R + G + +E Sbjct: 245 DYLNAQAAQVCAHARWAEDDLVIEAHYLADAPTAIAPRAARRLLEMMGDGDTDCSAAHLE 304 Query: 289 RVMLFLKSGKRGCVSI---GRVVIDRRANFLWITRAVRNLPTLILYP----------EET 335 ++ + V+ GR+ L T+ P + P + T Sbjct: 305 AIVNLCRGDDPSAVAFLPGGRLAQRVYGELLLTTQDDPRPPFEPVTPVRGENPIPGTDWT 364 Query: 336 TV-----WDG-RYQFQNLSDSLIQIG--PQSYRKADVPSGIPPIIAQRALSSMPSKEGGK 387 V W G + + D L + G ++ +K + IP +R +P G Sbjct: 365 LVLEEEPWPGLTVRPRQQGDELTRPGRRSRTVKKLMIDEKIPRRDRER----IPVAADGD 420 Query: 388 PLLA 391 ++A Sbjct: 421 GVIA 424 >gi|320536077|ref|ZP_08036134.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421] gi|320147077|gb|EFW38636.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421] Length = 452 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 153/353 (43%), Gaps = 41/353 (11%) Query: 1 MFLSPIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M S +++V + S++ +L+AVSGG+DS+ LL ALH++ +D + + ++ Sbjct: 1 MADSLLDAVLQNLSSILKVKKTYRLLIAVSGGADSLALLTALHTINTDFNH---RLFVVT 57 Query: 58 VDHCLRE--TAKDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREAR 106 V+H +RE K + +VS C+ L+ + V V S +TG AAR R Sbjct: 58 VNHNIREKNETKADADFVSSFCAHLQPPVPCIVKTIPAGSVKELASIRKTGTEDAARILR 117 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 Y E A ++A I+TAH +D ET+ MR + + K + + + Sbjct: 118 YRAFEEAAIEVSADFILTAHNKNDMYETILMRLFQGGSPKSIAGIPL-------VRGKYL 170 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 RP L R I +FL QRNI W ED +N + + R ++R + + LH++++ + D Sbjct: 171 RPLLTVERASIEAFLRQRNIFWREDKTNFEQVYLRNKIRHTLIPV-LHSVFVGWQSGLDT 229 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILN------------IDSTLLFYLLRVSAAI 274 + A + L + Q + L L++ + + Sbjct: 230 AIARIKADSDYCDTLLEKKQKKANKFWQKYRDASLSLDYAFFTSFPLPLRIRLIQQACNL 289 Query: 275 CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327 +P + S++R+ L+ + V + + R + L ++A ++ Sbjct: 290 LEIHKRIP-FASIQRLALY---SGKKTVQTSGIKLFREKDLLIFSKADTHIAH 338 >gi|88812394|ref|ZP_01127644.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231] gi|88790401|gb|EAR21518.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231] Length = 446 Score = 198 bits (505), Expect = 9e-49, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 122/342 (35%), Gaps = 24/342 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + +R + +A SGG DS LL A + + SA+ VDH L Sbjct: 6 VAAFALAMRPWRPIPRLWIAYSGGCDSTVLLHAAVT-------SGLPVSALHVDHGLHPE 58 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + D + C L + V GL AAAR+ARY + I TA Sbjct: 59 SGDWALHCRARCQALGVPLRVEPVTVRDGGEGLEAAARKARYQAYAAILAP--GECIATA 116 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ETV +R R G L+G+ + RP L R ++ ++ + Sbjct: 117 HHVDDQAETVLLRILRGTGIDG--LAGIPAERELGEG-RLIRPLLGFCRAELVAYATRHE 173 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +SW +DP+N DR +R +R V + L ++ + + + L Sbjct: 174 LSWIDDPANRCDRHDRSFLREHVVPLLETRWPGLAQRLTRLARHADAASMLTERWARRQL 233 Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKR 299 TV + +L D LLR G + R + ++ ++ Sbjct: 234 TVLGDDPCVLPVAVLAEFDEAERVQLLRSWIRRQGRRPPPERRLCRGLMDLL-RAAPDRQ 292 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341 + I R L++ P I P WD R Sbjct: 293 PALVWADGCIRRYRGRLYLLPPRLPQPPAIGLP-----WDMR 329 >gi|332359485|gb|EGJ37304.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056] Length = 425 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 134/348 (38%), Gaps = 30/348 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDNSNFQNDYLRNRIRN----LYLPNLEKENPQFKDSLRYLGKEIEEWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345 ++ +V D + + I+R IL E + G Y+F Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327 >gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium autotrophicum HRM2] gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium autotrophicum HRM2] Length = 362 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 28/334 (8%) Query: 13 VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEV 70 V +V P IL+ VSGG DS+ L IAL + D I ++H LR+ + + Sbjct: 20 VHGMVTPGDSILLGVSGGPDSVALAIALVLLRKDLG---ITLGIAHINHLLRDKESDRDE 76 Query: 71 RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +V ++ L + + + + Q L ARE RYA ++ + T H Sbjct: 77 AFVQELARSLELPFHPLKIDVATLARERQISLEETAREVRYAFFTDLCRHNGYTRTAVGH 136 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DD E V M R +G+ I + WI RP + + +I +FL ++ Sbjct: 137 TLDDNAELVLMNLLRGSGPRGLA------GIPPVRDHWIIRPLIGHTKGEILAFLREKAQ 190 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---------NNAVAML 237 ++ D +N + F R R+R + + ++ + + ++ N A A+ Sbjct: 191 AYVVDSTNLETVFLRNRIRNELLPLLRKEYNPRITENLNRVSRIMGEEDSWMDNEAGAVF 250 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG---QISLPGYRSMERVMLFL 294 L + + L ++R + G +I+LP ++ + Sbjct: 251 KTIRLEKKGPGVSLCLDGFNGLLPALKRRIVRKAIQAVKGDLKRITLPHVDAVAALAAAT 310 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 G+ + GRV I +++ L + L + Sbjct: 311 SPGRSLDLP-GRVRIFKQSQTLCFKKEPLPLREI 343 >gi|323697897|ref|ZP_08109809.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. ND132] gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132] Length = 336 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 18/292 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LV +SGG DS LL+ LH + S F A+ +DH LR + D+ + + Sbjct: 38 LTGRRVLVGLSGGVDSTALLLVLHYLSSRADF---TVGAVHLDHQLRPESADDATFARAL 94 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C RL I V + ++ GL A REARYAL +E ++ I H DD Sbjct: 95 CERLGIDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDLS 154 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E V MR R G G G+ +D + RP L + +++F+ + W ED Sbjct: 155 EDVLMRLIR-----GTGWPGLSGMAGHDPARGLIRPLLLIPKSTLKAFVTHLGVPWREDA 209 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D R RVR + L + + F ++ + + + + + Sbjct: 210 SNADPAMTRNRVRNEI----LPLIEKENPAFWQSVARLWRLGRVEQAFWAVLESEACEIL 265 Query: 253 SQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCV 302 L + +L + G GQ ++ + G Sbjct: 266 DNSRLESLHKAQRLHLYKACLDRLGPGQALADTLFKLDEAWRDRRVGAVFQF 317 >gi|325278802|ref|YP_004251344.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712] gi|324310611|gb|ADY31164.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712] Length = 441 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 122/338 (36%), Gaps = 23/338 (6%) Query: 7 ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E+++ F++ + A ++AVSGG+DS+ +L A + +K + + LR Sbjct: 4 ETIKNFLQQHHISRDAGFILAVSGGADSICMLHAFKYL-------NLKMLVLHCNFSLRG 56 Query: 65 -TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + + ++V C IAHSV + + + AARE RY E + Sbjct: 57 KESDMDEQFVKRFCDSYGIAHSVKKFDTLKYARENGLSVEMAARELRYTWFREMKEKKKM 116 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I+ AH DD ETV + R KG+ T + +N I RP L C R DI Sbjct: 117 DYIVVAHHADDVAETVLINLCRGTGIKGL-------TGIKSINGDILRPLLPCSRTDILK 169 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 ++ + + D +N + R ++R + + + + + + Sbjct: 170 YIEDHQLGFRTDSTNNSLDYVRNKIRHQIIPVLKEINPSFLDTMTENCETL-KETEEIFQ 228 Query: 240 KYLTVHMRSIIAISQDILNID-STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + I+ +D L I S L + + + ++ + Sbjct: 229 YGIHRFQEEILDCEEDELLIHISKTLATPAPYTFLYETLKPFGFNKVQIRDILNTHTAIP 288 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 G ++R F + + T++ P Sbjct: 289 GKQFIAGHHTLERGRIFWRLYDNSKCSRTIVSIPTTGI 326 >gi|322386421|ref|ZP_08060050.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100] gi|321269507|gb|EFX52438.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100] Length = 424 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 69/302 (22%), Positives = 119/302 (39%), Gaps = 34/302 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++ R+F +LVAVSGG DSM L L+ +R +I+ V+H Sbjct: 6 FRKQMQEKRYF----QNHRKVLVAVSGGLDSMTLFHLLYQ---NREELEIELGIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + +S+ +L + ++ AR RY E T Sbjct: 59 QRPESNMEEKELSNFAQQLGVKFFSSNFSGDFS----EEKARRFRYRFFEEVMLAEGYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + N + R L ++D L Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMTEVQSFA-NGELIRLLLHFHKQDFPDIL 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 ED SN + + R R+R + L +L + +F+D + + V L Sbjct: 172 ------HFEDKSNLQNDYLRNRIRN----LYLPSLEKENPRFKDSLISLGKEVENLQTAL 221 Query: 242 LTVHMR----SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + ++ + I + + LL L+ ++ + E ++ L++ Sbjct: 222 SHLTQGLDVTNLEVFERQIPEVQNFLLQEYLKKFPSLNTN------KKQFEEILGILRTK 275 Query: 298 KR 299 Sbjct: 276 AN 277 >gi|184154695|ref|YP_001843035.1| cell cycle protein [Lactobacillus fermentum IFO 3956] gi|183226039|dbj|BAG26555.1| cell cycle protein [Lactobacillus fermentum IFO 3956] gi|299782818|gb|ADJ40816.1| Cell cycle protein [Lactobacillus fermentum CECT 5716] Length = 449 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 16/239 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ R + V+H Sbjct: 8 MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLRR---PRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + ++W ED +N D R RVR L +L ++ + + L+ Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRHR----YLPSLSVENPRLVTALASDAEQINDLL 231 >gi|126663890|ref|ZP_01734885.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38] gi|126624154|gb|EAZ94847.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38] Length = 219 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 23/230 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I+S F++ +AVSGG DSM LL + F + + Sbjct: 5 FTKHIQSHFSFLQR----DKFYIAVSGGIDSMVLLHLF-------QHFQFSFGVLHCNFK 53 Query: 62 LR-ETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 LR E + ++R++ D C +LRI + + + AR+ RY E + Sbjct: 54 LRGEESDADMRFIHDYCEENNIQLRIGFFETEMIAKELKESIQVTARKLRYNWFYEQMEE 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + TAH DD LET + R G+ T + ++N I RP L RE+ Sbjct: 114 NDVQFVATAHHLDDSLETFLINLSRGTGIDGL-------TGIPEINDQIIRPLLPFSREE 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 I + NI W ED SN ++ R ++R V I + FQ L Sbjct: 167 IEQYAKVNNIQWREDASNATTKYLRNKLRHDVVPILKEINPEFLSSFQKL 216 >gi|291543862|emb|CBL16971.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus sp. 18P13] Length = 448 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 78/353 (22%), Positives = 133/353 (37%), Gaps = 29/353 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +E++ + + + VA+SGG+DS L +L+ R I A+ V+H Sbjct: 1 MLHCMMETIHRYA-MVQPGDTVTVALSGGADST---ALLLGLLALREQLGISLRAVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHA 114 LR + + + + +C ++ V ++ + T AARE RYA + Sbjct: 57 HLRGAESDRDAAFCAQLCEERQVPFFLGTCDVATYAAQRKHTSCEMAARELRYAQLEALC 116 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + I TAHT D ETV R R G GL+G+C + + I RP L R Sbjct: 117 --PPGSKIATAHTASDNTETVLERLTR-----GTGLAGLCG--IPPVRGRIIRPLLYVTR 167 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 I FL Q++ S+ D +N D F R R+R V + + + +++ Sbjct: 168 PQILGFLAQQHQSYVTDSTNAQDAFFRNRLRHHVLPVLRQQNPAVDRTVGVMTRILSDEQ 227 Query: 235 AMLIPKYLTVHMRSIIAISQ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 L + R + N+ + +L + CG ++S +E+++ Sbjct: 228 QYLEQQAQDAFDRCFDPAQNSLSGLQNLHPAMERRVLALFLQRCGVEVSAVRIARVEQLL 287 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWDGR 341 V + L A P ++L E + GR Sbjct: 288 QT----GGKQNIAAGVYLTADQGMLKWEHAQAPSPAVGEMVLQIGENRLMPGR 336 >gi|88705811|ref|ZP_01103520.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71] gi|88699882|gb|EAQ96992.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71] Length = 422 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 72/355 (20%), Positives = 125/355 (35%), Gaps = 16/355 (4%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L +E R L + VA SGG DS LL A H DR A+ +H Sbjct: 1 MLLALEECR---SQLSAAGQLFVAYSGGLDSTVLLHAAHKTCPDR------LVALHANHG 51 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L+ A+ + C +L +A + +G+ AAAR+ARY + + Sbjct: 52 LQAEARRWQAHCEAFCEQLGVAFASTELSLEPAGSGMEAAARDARYRWFEDRIGRGG--V 109 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AH DDQ ET+ +R R G L+GM + RR ++ + Sbjct: 110 LLMAHHQDDQAETLLLRLLRGAGPDG--LAGMPQHRALGAGSLLRPLLSLPRRA-LKEYA 166 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + +SW EDPSN D RF+R +RR V + ++ L Sbjct: 167 EESGLSWVEDPSNGDMRFDRNYLRREVMPLLERRWPGYRSTLSRTAAQLRERNEHLPAPR 226 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 L+ + + L + + + P + + L+ G+ Sbjct: 227 LSTVQGCFGDPGFLVAALPEEPALAALALRDWLRERSLRPPSAAQLSEFLRQLREGRGAR 286 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL--ILYPEETTVWDGRYQFQNLSDSLIQI 354 + I+R + +++ + + E+ W G + + + Sbjct: 287 LQCPEWTIERYRDAVYLLPPPLDTAPEAGAITVGESLFWPGLGRLTLRREGAGNV 341 >gi|315924895|ref|ZP_07921112.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621794|gb|EFV01758.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 486 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 113/332 (34%), Gaps = 25/332 (7%) Query: 13 VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EV 70 V + P ++V VSGG DSM LL L + I A V+H +R A + + Sbjct: 29 VHQMFEPGDRVIVGVSGGIDSMALLHFL---WTHADALGIAVMAGHVNHRIRGEAAEGDQ 85 Query: 71 RYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +V+ C+ I V + + L A R AR + A I AH Sbjct: 86 TFVTQWCADHGIPALTAAADVPLTAKERKISLETAGRLARRRCFERWQRQTGAAKIALAH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV M R +G + RPFL+ RRE I ++ + + Sbjct: 146 HLDDQAETVLMHLIRGAGIRGAAGM-------RPVAGAFVRPFLQVRREAIEAYAAAQQL 198 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 ED +N D F R R+R V + + ++ D + Sbjct: 199 PHVEDATNASDAFMRNRLRHQVMPVLTACNARAAAHIGAFAEQAADWCDAQREILETARE 258 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI--SLPGYRSMERVMLFLKSG 297 + +T R I + + + LL A + M + L + Sbjct: 259 RCVTPTDRGIEVALPGWRALPAAVQGALLNRVMAEAAQTAVDFEARHVRMLQEKLAAPAT 318 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329 + RR + L +R+ + P Sbjct: 319 TWDLDLPHHLRARRRYDRLIFSRSGQRRPKPF 350 >gi|300812074|ref|ZP_07092522.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496913|gb|EFK31987.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 431 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 122/320 (38%), Gaps = 14/320 (4%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + LVA SGG DSM LL + + G + A +DH LR ++ E Sbjct: 11 FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65 Query: 71 RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + C + ++ W K+ P++GL AAAR+ RY + E A+ + A ++TAH D Sbjct: 66 QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LE + ++ R + + + + RP L + D+ ++ ++ + + Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQWGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED +N R R+R+ V + ++ ++ + Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKRESPDLLENAWRFSQEMTAEEDYFAQAAGKLPEPEP 242 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 I L++ + ++R++L + + G + + Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297 Query: 310 DRRANFLWITRAVRNLPTLI 329 + W+ + P+ + Sbjct: 298 SFYQGYYWLYPVKQPAPSPL 317 >gi|227514335|ref|ZP_03944384.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931] gi|227087307|gb|EEI22619.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931] Length = 449 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 16/239 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ + + V+H Sbjct: 8 MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLKR---PRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + ++W ED +N D R RVR L +L ++ + + L+ Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRHR----YLPSLSVENPRLVTALASDAEQINDLL 231 >gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278] gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278] Length = 367 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 18/283 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+ F PA +++AVSGG DSM LL + G + AI+VDH LR A Sbjct: 22 EAEVLFASLADAPA-LVLAVSGGPDSMALLWLAARWRQALADGP-RLVAITVDHGLRPEA 79 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + E V +L ++H ++ W KP TG+ AAR ARY L++ A+ A+ ++TAH Sbjct: 80 RREAAMVKRFARQLEVSHRMLRWTEPKPTTGIPEAARLARYRLLARAARQAGASHVLTAH 139 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV MR R G+ + L ++RP L + + + L I Sbjct: 140 TRDDQAETVLMRLLRGSGIVGLAAM---APVSARDGLLLARPLLEISKARLVATLRSAGI 196 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 + +DP+N D + R R+R + + + R+ NA L+ H+ Sbjct: 197 EFADDPTNHDPAYTRPRLRALMPALAAEGGDSRTLATLAGRLARANAAIELMVDGAEKHL 256 Query: 247 -------------RSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + ++ + + + + LL + G Sbjct: 257 ALRASRGGSIRPAQGQTFEARAFVALPAEIRLRLLMRAINQIG 299 >gi|295397830|ref|ZP_06807894.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563] gi|294973927|gb|EFG49690.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563] Length = 484 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 9/250 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+AVSGG DSM LL H + + FS I ++H LR + E V C Sbjct: 37 PFLLAVSGGVDSMVLLDLFHRLSQK---SLVTFSVIHINHQLRPESTAEQDMVIKFCEDR 93 Query: 81 RIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I +V+W + PQ AARE RYA+ + ++TAH +DQ ETV MR Sbjct: 94 DIPIQIVAWDHDDPQNPNRSELAAREFRYAVFKRMMVLTKSPFLVTAHHQNDQAETVLMR 153 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 K + I D L ++ RP L + D+ + I + ED SN Sbjct: 154 LVHGGRLKSIAGIHPYRPIHLDQGLQTGYVLRPLLSVDKADLYEYATAWQIPFSEDASNL 213 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D + R R R+ + D + A + Y+ +R ++ D Sbjct: 214 DLAYTRNRFRQQYLPELEAEDGALVDHLGDFALA-AQATSRFADAYMDQVLRDVLMKKDD 272 Query: 256 ILNIDSTLLF 265 +D + Sbjct: 273 TWQVDLAAIA 282 >gi|330896077|gb|EGH28298.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 286 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 8/257 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + A S + + Sbjct: 202 LRSQVVPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261 Query: 264 LFYLLRVSAAICGGQIS 280 L + +SAA + Sbjct: 262 LGPIAALSAARQRNALR 278 >gi|270308585|ref|YP_003330643.1| PP-loop [Dehalococcoides sp. VS] gi|270154477|gb|ACZ62315.1| PP-loop [Dehalococcoides sp. VS] Length = 476 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 130/319 (40%), Gaps = 28/319 (8%) Query: 7 ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR +++ LV + IL+AVSGG DS+ +L +H + S+ F ++H LR Sbjct: 9 ERVRKYIKKQGLVSAGNEILLAVSGGPDSVCMLYIMHKLSSEMGF---SLRLAHLNHGLR 65 Query: 64 -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E ++ + YV+++ L + V + AARE RYA + A Sbjct: 66 GEESERDAAYVAELADNLGLPLCQQKISVKAYKDEHHLSTEEAAREMRYAFLCRTAAEHG 125 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176 A + HT DD +ETV + R +G+ GL + + L + RP L R + Sbjct: 126 AAAVAVGHTIDDNIETVMLHLVRGSGTRGLQGLRSVVGRDIAGAGCLRVIRPLLSLSRAE 185 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234 +S+ + +S +D +N R R+R V L L F++ LR Sbjct: 186 TQSYCREAGLSPVQDATNQSTEPLRNRIRLEV----LPMLRAINPAFEETILRTAFIAGE 241 Query: 235 AMLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGYR 285 M + +T M++ + I QD + + L LLR G + R Sbjct: 242 EMALLDEVTSQMKAELVIRQDNVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEAR 301 Query: 286 SMERVMLFLKSGKRGCVSI 304 +E ++ L + + Sbjct: 302 HIESIVQTLDKPAGRRIDL 320 >gi|323345484|ref|ZP_08085707.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella oralis ATCC 33269] gi|323093598|gb|EFZ36176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella oralis ATCC 33269] Length = 444 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 35/312 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + +VA+SGG+DS+ LL+ L + A + LR E ++ + + Sbjct: 18 LSKDSKYVVALSGGADSVALLLTLKRL-------GYVIDAAHCNFHLRGEESQRDEEFCI 70 Query: 75 DVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +C R I +H + + AARE RY ++ I A + AH DD Sbjct: 71 SLCKRENIRLHRSHFDTKAYAELHKISIEMAARELRYHYFNQLIHDIGAQGVCVAHHRDD 130 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ETV + R G G+ G+C + N + RP L R DI +L Q + + Sbjct: 131 SVETVLINLIR-----GTGIHGLCG--IAARNGNVLRPLLCVSRLDILEYLKQLHQEFVV 183 Query: 191 DPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 D SN D R ++R + + ++Y + K + + L+ + + Sbjct: 184 DSSNLIDDVLRNKIRLDILPVMQNINPSVYTNIAKTAQYVREAVKMLDDLLKDKIVWQNK 243 Query: 248 SIIAISQDILNIDST-LLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVSI 304 S DI+NI + L+YLL+ +E+ LK SGKR Sbjct: 244 GSYK-SFDIINIHTEYELWYLLK---------GYGFTSTQVEQAYHSLKSTSGKRWISKE 293 Query: 305 GRVVIDRRANFL 316 +++IDR L Sbjct: 294 YQLLIDRGRLLL 305 >gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16] gi|61216430|sp|Q5WAE0|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16] Length = 469 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 140/328 (42%), Gaps = 34/328 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE+ R F ++LVAVSGG DSM LL + ++ R K+ + V+H LR E Sbjct: 9 IENNRLF----GMETNVLVAVSGGPDSMALLAIMANL---REKWKLNLFGVHVNHRLRGE 61 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINAT 120 + + V +RL + +V + + G AAR RY + + ++AT Sbjct: 62 ESNKDAELVQSFSARLGVPCNVKDVDVAAFKAEHHVGTQQAARALRYQVFQGEMERVHAT 121 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TAH DD++ET +M+ R + G+ T + + ++RP L + I ++ Sbjct: 122 VLLTAHHGDDEVETAFMKLTRGTTP--LTKLGIAATRPFANGV-LARPLLEETKRSIVAY 178 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ I + D SN D + R R R + + ++ + +F + + N+ + Sbjct: 179 CHEKAIPYRIDQSNFSDAYTRNRFRMNMAPYLVEENPHIHKHIGRFDRWQEEDNHYLMEQ 238 Query: 238 IPKYLTVHMR---------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---PGYR 285 +L + I A+ + ++ +L G + P Sbjct: 239 AKAHLDQILTKKSEKSIELEIQALCLAPFPLQRRMIHLILNYLHLNVYGVNDMRVFP--D 296 Query: 286 SMERVMLFLKSGK-RGCVSI-GRVVIDR 311 ++E++ FL++ + + GRV + R Sbjct: 297 AIEQIQAFLQTSAPSAQLDLPGRVQVKR 324 >gi|167036726|ref|YP_001664304.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115148|ref|YP_004185307.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855560|gb|ABY93968.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928239|gb|ADV78924.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 458 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56 Query: 61 CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R A + ++V D+C +L++ V + A R RY E K Sbjct: 57 MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + RE Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +L ++++ D +N +D ++R +VR + + +Y K + Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|229551622|ref|ZP_04440347.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus LMS2-1] gi|258540711|ref|YP_003175210.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus Lc 705] gi|229315026|gb|EEN80999.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus LMS2-1] gi|257152387|emb|CAR91359.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus Lc 705] Length = 435 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 77/278 (27%), Positives = 118/278 (42%), Gaps = 17/278 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DSM LL + + DH LR ++ E +V+ Sbjct: 13 PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVAAAA 66 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +R + +W+ S AAAR+ARY ++ A + AT+IMTAH DDQLETV Sbjct: 67 ARYHVPVVTGTWQRSAATAVSEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R L G+ + + RP L ++DIR++ + + +C+DPSN D Sbjct: 127 RLGRSGDP--AALVGIRPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250 R+ R ++R V ++ Q + + VA+ + R I Sbjct: 184 RYARNQLRHQVIPAFKKQNPELLRHVQRFTTEQSGLVALAQMQLTEWQQRLRINSVTIDW 243 Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 A + I LL LLR + +P +S+ Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMPILKSL 281 >gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans DSM 12444] gi|123491176|sp|Q2GC97|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 326 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 17/311 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++L + +AVSGG DS+ L++ + V F +VDH LR + E V Sbjct: 20 QALDPSGRVCLAVSGGPDSLALMLLMQEVAPR------DFCVATVDHGLRAESAAEAAMV 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +C IA+ + + + + AR+ARYA +++ A+ + ++TAH DDQ E Sbjct: 74 AGLCEMRGIAYHTLRLDLA-GGSAVQERARKARYAALADLARRDGLSAVVTAHHADDQAE 132 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R +G+ ++ + + RP L RR ++ + + ++ DPS Sbjct: 133 TLVMRLNRGAGLRGLAGMRAASSVPGAGEVRLLRPLLGWRRAELVALVEDAGLAPVLDPS 192 Query: 194 NTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D R+ERVR+R + + + + + AV L +L + M + Sbjct: 193 NHDHRYERVRIRDVMASTKALLPSGFAASASHLAEADAALEWAVERL---WLDIGMSAEG 249 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 + ++ L LL GG ++P + R + L++G G ++ V D Sbjct: 250 STWNPPEDLPRVLALRLLERVVMHLGG--TVPRGPDLVRWLATLRAG--GVATLAGVKGD 305 Query: 311 RRANFLWITRA 321 R+ +RA Sbjct: 306 ARSGAWRFSRA 316 >gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786] Length = 491 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 21/320 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + +L + A I +A SGG DS LL A + G + A+ V H L Sbjct: 14 LDAIGVALSALPHDARIALAYSGGLDSTVLLHAAARIA-----GAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++ L + + G+ A+AR+ARY + A + Sbjct: 69 ADAWLAHCAETADALGVRFDAAHVDVPRASGQGVEASARDARYRALETMCARHGARALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPASTDVVRMRPLLHLLRAQLERYAQQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241 + W +D SN + R+ R +R V L AL F+D + A L+ Sbjct: 188 ALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 + +R++ L+ D+ + LLR G S M + + Sbjct: 244 AAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRAN 314 + V + + Sbjct: 304 RDAHALRVDHAGWRLRLYRD 323 >gi|330968943|gb|EGH69009.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 307 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 65/257 (25%), Positives = 99/257 (38%), Gaps = 8/257 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLYLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCRTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + +++T DDQ ET+ R R Sbjct: 88 FESVRLQV-EPGPSLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGRLVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + A S L + Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIAHAQAATSFAWLGLPVLS 261 Query: 264 LFYLLRVSAAICGGQIS 280 L + +SAA + Sbjct: 262 LGPIAALSAARQRNALR 278 >gi|85059904|ref|YP_455606.1| cell cycle protein [Sodalis glossinidius str. 'morsitans'] gi|84780424|dbj|BAE75201.1| cell cycle protein [Sodalis glossinidius str. 'morsitans'] Length = 542 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 27/337 (8%) Query: 6 IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKI----KFSAISVDH 60 ++ +R V + V P +L+A SGG DS LL AL ++ A+ V H Sbjct: 9 VQVLRRHVAARVAPYRALLLAFSGGLDSTVLLDALAALRDGDGLSGGDGAQTLRAVHVHH 68 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + + C R +A +VV G+ AAAR ARY ++ A Sbjct: 69 ALSRHADEWAAHCAQECRRRDVAFTVVHVVVDATSEGIEAAARGARYGALA--AALTQDE 126 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++TA DDQ ET+ + +R G+ + L + RP L R ++ ++ Sbjct: 127 VLITAQHQDDQAETLLLALKRGSGPAGLASMAVDAPYL---GHRLVRPLLDFSRGELEAY 183 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237 R + W ED SNTD RF+R +R + L L + +F + + A L Sbjct: 184 AQARGLHWTEDDSNTDLRFDRNFLRLRI----LPPLRQRWPQFANAVARSAQLCAEQEQL 239 Query: 238 IPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + L + +IA + + + + LLR A G + +P + R+ Sbjct: 240 LDELLAETLADVIAPDESLRLTALATMSESKRAALLRRWLASLG--VRMPARAQLARLWQ 297 Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 + + + ++ R + L++ + L Sbjct: 298 EVALSRRDAVAQLKLDGRLVRRFRDRLYVVPRLPPLT 334 >gi|126653286|ref|ZP_01725397.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905] gi|126589960|gb|EAZ84089.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905] Length = 468 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 14/233 (6%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 V+ F+ L H+L+AVSGG DSM LL H + + I+ A+ VDH LR Sbjct: 6 KVKTFIEKEQLLQQDDHLLIAVSGGVDSMALL---HYFVQTQEHWNIRVEAVHVDHMLRG 62 Query: 65 TAKDEVR-YVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 A E R +V C + + + R RY E NA Sbjct: 63 EASAEDRAFVQKYCDENDVYLHATAISIPTILALENGNTQLICRRERYRYFKEVLYKTNA 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++TAH DDQLE+V M ++ M Y + RPFL + +I Sbjct: 123 NKLVTAHHADDQLESVLMALTKNAT---MNSMQGIRPQRYFEGKSLIRPFLTVTKTEIGE 179 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +LL++ +++ ED SN+ D + R R R V + ++ ++ Sbjct: 180 YLLRKGLNYREDVSNSKDTYVRNRFRHHVVPLLEAENPRVTEQVTHFTSQLQE 232 >gi|55820113|ref|YP_138555.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus LMG 18311] gi|55822003|ref|YP_140444.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus CNRZ1066] gi|61217175|sp|Q5M217|TILS_STRT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217177|sp|Q5M6K9|TILS_STRT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|55736098|gb|AAV59740.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus LMG 18311] gi|55737988|gb|AAV61629.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus CNRZ1066] Length = 421 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 25/306 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ Sbjct: 17 QHKKVLVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEENYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AAR RY K + + ++TAH DDQ ET++M Sbjct: 74 KEHKVPFH----YSAFSGKFSENAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+CD + I RPFL ++ + ED SN+ Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKDQLPVT------FHFEDRSNSSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R L L + KF++ + + +A L+ K L + I + Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLADEIA-LMDKALEELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315 + + +LL S + L ++M FL+ G + + G V++ + +F Sbjct: 236 QQQTDAVQHLLIQSYLESFPDLQL-SKGQFNQLMSFLRKKTSGKMPLKNGYVLVKTQTDF 294 Query: 316 LWITRA 321 L IT+ Sbjct: 295 L-ITKE 299 >gi|116626984|ref|YP_819603.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus thermophilus LMD-9] gi|116100261|gb|ABJ65407.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus LMD-9] gi|312277429|gb|ADQ62086.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus ND03] Length = 421 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 25/306 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ Sbjct: 17 QHKKVLVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEENYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AAR RY K + + ++TAH DDQ ET++M Sbjct: 74 KEHKVPFH----YSAFSGKFSENAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+CD + I RPFL ++ + ED SN+ Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKDQLPVT------FHFEDRSNSSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R L L + KF++ + + +A L+ K L + I + Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLADEIA-LMEKALEELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315 + + +LL S + L ++M FL+ G + + G V++ + +F Sbjct: 236 QQQTNAVQHLLIQSYLESFPDLQL-SKGQFNQLMSFLRKKTSGKMPLKNGYVLVKTQTDF 294 Query: 316 LWITRA 321 L IT+ Sbjct: 295 L-ITKE 299 >gi|73663556|ref|YP_302337.1| hypothetical protein SSP2247 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496071|dbj|BAE19392.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 431 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 HI++AVS G DSM LL H +++ K + + V+H +R AK+E ++ C Sbjct: 12 KDKHIVLAVSTGVDSMVLL---HELITRLKDSYAKLTCLHVNHNIRPIAKEEEYFLKQFC 68 Query: 78 SRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + V S + + AR ARY E + A +++TAH DDQ+ET Sbjct: 69 KAHHVELYVRHLDLSDVIEKGNSIENDARVARYQWFDEMMYELKADILLTAHHQDDQIET 128 Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R + + +G++ Y I +P L + +IR + + + + ED + Sbjct: 129 IFYRVMTGRSTRSSLGMAYQTTRASY----QICKPLLSTTKNEIRDYQVMHRVPYYEDET 184 Query: 194 NTDDRFERVRVRRFVRDIDLHALYL------KMKKFQDLRVKV--NNAVAMLIPKYLTVH 245 NT + + R +R + L K+K++ D +++V N AVA + L Sbjct: 185 NTQNHYVRNDIRNRILPEINENAQLATDQLIKLKEWHDEQLEVINNEAVAFIKQDILKSV 244 Query: 246 MRSIIAISQ-DILNIDSTLLFYLL 268 I++ LN+ ++ +L Sbjct: 245 KTQKYTIARSQFLNLRHSVKMAVL 268 >gi|78043578|ref|YP_359085.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|77995693|gb|ABB14592.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 115/301 (38%), Gaps = 19/301 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++ +++V+ + + + ++V VSGG DSM LL L + F + V+H Sbjct: 4 LYAKFVKTVQKY-QMINPGEKVVVGVSGGPDSMALLFCLLKYREEVDF---SLEVVHVNH 59 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTIN 118 LR + + V D + I V + K + L A AR+ RY E + Sbjct: 60 GLRGRESDLDEELVLDFTRKYGINFHVKKLDDLKDLRENLQAVARQKRYEFFYEVLEKTG 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I AHT D ETV M R +G+ ++ + I RP R ++ Sbjct: 120 ADKIALAHTASDVAETVMMNILRGAGTEGL-------CGIWPVRDRIIRPLYTVFRREVM 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAML 237 SF+ ++NI + D SN ++ R +VR + + ++ +L + +L Sbjct: 173 SFVERKNIPYRVDSSNLVPKYLRNKVRLKLFPFINEEFATDIEERLFNLALIKQEENQVL 232 Query: 238 IPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + + Q + N+ LLR G +E ++ Sbjct: 233 DNYLNKLWQEAFVKEGQYLKVPVLQNLSRAEAGLLLRKFWEQATGSKRDLYQEHIENLLA 292 Query: 293 F 293 F Sbjct: 293 F 293 >gi|223933450|ref|ZP_03625435.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591] gi|302023120|ref|ZP_07248331.1| PP-loop family protein [Streptococcus suis 05HAS68] gi|330831862|ref|YP_004400687.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3] gi|223897888|gb|EEF64264.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591] gi|329306085|gb|AEB80501.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3] Length = 422 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 111/291 (38%), Gaps = 23/291 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL FF + +LVAVSGG DSM L L+ + I+ ++H Sbjct: 5 FLKVTLDGHFFDKH----NKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE + E +Y+ + + + ++ AAR+ RY + + T Sbjct: 58 QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LS + T + + RP L ++ D Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED SN D ++ R RVR + V NN L Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIEFTLNNFAVDTNNLFQALRDLT 224 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + + +++ Q + S LL L + Q+S P + + ++ Sbjct: 225 QDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272 >gi|189346163|ref|YP_001942692.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245] gi|189340310|gb|ACD89713.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245] Length = 325 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 125/330 (37%), Gaps = 35/330 (10%) Query: 10 RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + F++ L H+LVAVSGG DSM LL L +V S + + S + LR Sbjct: 6 KTFLQQLRNRRLVAEGEHLLVAVSGGPDSMALLYLLCAVAS---VVRCRISVAHCNFQLR 62 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118 E + + R+V + C L + + + + + AR RY+ + Sbjct: 63 GEESDSDERFVMEQCRLLGVECFSRQFDTAAVSASWKKSVEETARLQRYSWFETLLQERE 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I T H D ET+ R + G+ + ++ + RP L + DI Sbjct: 123 MTKIATGHHVSDNAETILFNLFRGTSLLGL-------KGIRAMHGRVIRPLLLLHKSDIL 175 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +L ++ I + D SN ++R +R V + + + + ++ + A + Sbjct: 176 GYLQEKEIPFRTDASNESIDYDRNFIRNRVIPLIEE----RFEHKLTVSLQRLSEQAGEL 231 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMER 289 +L + + + + L LR + +I P ++R Sbjct: 232 EAFLEGYFERLAEERPALFPAEGRLDVAELRKLSLFEQKEIFKRALQESGASPDAAILQR 291 Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWI 318 ++ L S + + G++V++ + L Sbjct: 292 LVSLLDSQPGKKIVVNGKLVVEWKGGHLLF 321 >gi|284048931|ref|YP_003399270.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM 20731] gi|283953152|gb|ADB47955.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM 20731] Length = 350 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 25/293 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 ++ A+SGG+DS+ L + + + + A+ V H LR E A+ + R V D Sbjct: 20 PGTKVIAALSGGADSLCLADVMAAQGEE---DGVDVLAVHVQHHLRGEEAEQDARQVEDY 76 Query: 77 CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C +A V K L AAR RY + + A I AH DDQ Sbjct: 77 CRNRGLAFRRVDVDARSLAEKEGLSLEDAARRLRYEALETCRQEAGAEAIFLAHHQDDQA 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R +G+ + +N +++RPFL R D ++ + ++WC+D Sbjct: 137 ETVLLNLVRGAGTRGL-------RGMLPVNGYLARPFLGITRRDTEAYCEEMGLTWCQDS 189 Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 +N D +R VR+ + + + ++ + L + L +Y+ + R + Sbjct: 190 TNEDQSLKRNWVRKTLLPLLETQNPQIRKQLAQAAALAASDEAYLEKLAGRYIDAYGREV 249 Query: 250 -----IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 I + +D + L ++R+ GG Y + +++ + G Sbjct: 250 FDTWDIKVEKDFAALPLALQSRVIRILVRNVGGAE--LSYDHVRKILDMIARG 300 >gi|261403929|ref|YP_003240170.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10] gi|261280392|gb|ACX62363.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10] Length = 476 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 16/280 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ IE I+VAVSGG DS+ LL LH + R+ ++ V H Sbjct: 9 FVQHIERTAAEFDLWSEGDGIVVAVSGGPDSVALLHVLHEISQHRT--PLRLICAHVHHG 66 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R+ + E V ++ L + + + G AARE RY + + A+ Sbjct: 67 FRKESDQEAEMVRELAESLGLPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKH 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA + AH DDQ ETV+MR R G+G T + + + RPFLR + DI Sbjct: 127 NARSVALAHHADDQAETVFMRLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAV 234 + D SN ++ R +R V + + ++ + ++ V Sbjct: 184 VELCRVCGFQYAVDHSNLQTKYRRNAIRLEVFPFLERYNGQFSSSLNQLAEIVQQEDDFV 243 Query: 235 AMLIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRV 270 + K ++ + + L + L L+++ Sbjct: 244 ELEAAKQFRSLVQENDGRLAFDAPSFLGLHVALQRRLIKL 283 >gi|189502540|ref|YP_001958257.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus 5a2] gi|189497981|gb|ACE06528.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus 5a2] Length = 454 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 20/246 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +L+AVSGG DS+ + H ++ F+ + LR + ++++ +V Sbjct: 24 LQAEEPVLLAVSGGVDSVVMCSLFHE-------ARLHFAIAHCNFGLRGQESEEDEAFVH 76 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + ++ + + AARE RYA E + TAH +D Sbjct: 77 TLAQQYQVEFFTKRFNTKAYAKTNKLSTQMAARELRYAWFKELCNIHQIDKLATAHHAND 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LETV KG ++G+ + N + RP L +E++ + + +SW E Sbjct: 137 CLETVLFNL-----TKGTSIAGLHGILPKQNN--LIRPLLFASKENLLQYAQAKGLSWRE 189 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D + R +R V L + ++ +L + + V L + L + I Sbjct: 190 DSSNKQDDYARNLIRHQVIP-SLKLINPNLESTTNLTIDRLSQVEKLFNEQLENIRKEIF 248 Query: 251 AISQDI 256 +DI Sbjct: 249 FQQEDI 254 >gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147] Length = 491 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 21/320 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + +L A I +A SGG DS LL A + G + A+ V H L Sbjct: 14 LDAIGVALSALPDDARIALAYSGGLDSTVLLHAAARIA-----GAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++ L + + G+ A+AR+ARY + A + Sbjct: 69 ADAWLAHCAETADALGVRFDAAHVDVPRASGQGVEASARDARYRALETMCARHGARALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPASTDVVRMRPLLHLLRAQLERYAQQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241 + W +D SN + R+ R +R V L AL F+D + A L+ Sbjct: 188 ALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 + +R++ L+ D+ + LLR G S M + + Sbjct: 244 AAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRAN 314 + V + + Sbjct: 304 RDAHALRVDHAGWRLRLYRD 323 >gi|163814651|ref|ZP_02206040.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759] gi|158450286|gb|EDP27281.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759] Length = 497 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 17/243 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 H + VSGG+DS+ L+ L + + I+ + ++H +R A D + YV ++C Sbjct: 36 KHCVCGVSGGADSVSLITVLVRLC---GYLGIELHVVHINHMIRGAAADSDQEYVEELCR 92 Query: 79 RLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQL 132 + ++ V S + A R ARY + +I AH +D Sbjct: 93 KYGVSCNSYNIDVQTMASDRGFTVEEAGRLARYDAFDTVRRQYEGEGCVIAVAHNRNDVA 152 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV R G G+ G+ N I RP L C R +I +L + I +C D Sbjct: 153 ETVIFNMAR-----GTGMGGIKGIAPVREN--IVRPLLGCDRSEIEGYLDRMGIPYCTDA 205 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +N +D + R ++R + + + ++ D+ + + + I I Sbjct: 206 TNNEDDYTRNKIRHKILPLMVEINEQAVEHICDMAELAADYERLALGVVEEFLKSQGIDI 265 Query: 253 SQD 255 SQ+ Sbjct: 266 SQE 268 >gi|258645728|ref|ZP_05733197.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470] gi|260403097|gb|EEW96644.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470] Length = 473 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 112/293 (38%), Gaps = 22/293 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL AVSGG DS+ L ++ KI V+H LR A E +V VC Sbjct: 26 RILAAVSGGPDSL---ALLLALKLLAVKEKINIGCCCVNHHLRAAAGKEAEFVESVCREW 82 Query: 81 RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + + AAR+ RY + E A+ I AH DDQ ETV Sbjct: 83 NIPFILKEVDVQSAVRNGGSIETAARDFRYKALREAARGGRYAKIAVAHHGDDQAETVLY 142 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GLSGM +N I RPFL + +I+ FL + C D SN + Sbjct: 143 HLLRGSGV--TGLSGMK-----PINGDIIRPFLCVSKNEIKDFLKDFSYVPCHDESNDVE 195 Query: 198 RFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 R R+R + +L F++ + + + I + + Sbjct: 196 DAVRNRIRLSLVPELISYNPRVTESLRRTADIFREEDLFMEEKADVFISSCVEHDNDKCV 255 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 L + L ++R + G+I P + E+ + + +GK G V+ Sbjct: 256 FFIAYFLALHIALQRRVIRKICCMVAGRI--PSFEGTEKFIFLIGAGKTGSVT 306 >gi|319943422|ref|ZP_08017704.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599] gi|319743237|gb|EFV95642.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599] Length = 476 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 142/368 (38%), Gaps = 29/368 (7%) Query: 4 SPIESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +P++++R ++ L +L+A SGG DS L+ A+ ++ ++ + V H Sbjct: 5 TPVDALRQCLQRAGLGPDDTLLLACSGGRDSQVLMHAVAALR-----PVVRAAVAHVHHG 59 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINA 119 L+ A D + + + S L + + S GL A AR RY +++ A I A Sbjct: 60 LQSRADDWLVFCAAEASSLGLPFLSRRLRVSAGFGALGLEAWARAGRYRALADMAAEIGA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIR 178 +++TAH +DQLETV +R +R G+ + + + + RPFL R+ + Sbjct: 120 RVVLTAHHANDQLETVELRRRRGSGLLGLAGMRESSPMPHAPAGMRVLRPFLGLSRQQLA 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232 + I W EDPSN D R R RVRRF+ + L + Q ++ Sbjct: 180 EWAQAHGIQWVEDPSNQDTRLARNRVRRFLDQRLRDDALSLPDELASIGLLQQAADRLLG 239 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRS 286 + A +L+ +DS LR G +P Sbjct: 240 QAEADVAACTVHLASHTAAADWPMLSRSAMMGLDSVRRAEALRWWLGRLG--CRMPSRLK 297 Query: 287 MERVMLFLKSGKRGCVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD---GR 341 + + L + + + R + + + V + L+L + T D GR Sbjct: 298 LFEIERQLLLAAASQALVRHDGITLLRYRDRIGVMPEVLPISPLLLRWKGETFVDLPAGR 357 Query: 342 YQFQNLSD 349 + Sbjct: 358 LYIEQAGS 365 >gi|227824811|ref|ZP_03989643.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21] gi|226905310|gb|EEH91228.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21] Length = 350 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 27/302 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R ++ A SGG+DS+ L + + + V H LR E A ++ R+ Sbjct: 16 RLWQEGGTVIAACSGGADSLTLTDIMAKAAEE---DDVTVLVAHVHHHLRGEEADEDARF 72 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 VS C ++++ K L AAR RY + + K + A I AH Sbjct: 73 VSAFCKDRDLSYTQFDIDPQALKEKEGLSLEDAARRLRYEALETYRKKVGAQGIFVAHHE 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ M R +G+ + +N +I+RPFL R+D+ ++ + +S+ Sbjct: 133 DDQAETILMNLVRGTGTRGL-------RGMLPVNGYIARPFLAATRKDMETYCKEEGLSY 185 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D +N + R VR + + L ++K V + + K ++ S Sbjct: 186 RTDSTNGNPALLRNWVRLELLPL-LATKNPRIKAALVQAAAVAQSDEAYLEKMAQKYLDS 244 Query: 249 I---------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 I + +D + ++R++ GG+ G+ +++++ ++ G Sbjct: 245 FSRNIFGTYDIDVGPTFDKLDLAIKSRVIRLAVKGVGGEE--LGFDHVKKILRLIEKGIS 302 Query: 300 GC 301 G Sbjct: 303 GK 304 >gi|295109538|emb|CBL23491.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Ruminococcus obeum A2-162] Length = 467 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 28/297 (9%) Query: 1 MFLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M ++ V+ ++ ++ P ++ VSGG DSM +L L + D + + Sbjct: 1 MQEQVLQKVKQYIAETEMIKPQCTVIAGVSGGPDSMVMLDILRRLQGD---YECSLRVVH 57 Query: 58 VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISE 112 V+H +R A + + V +C +I V S+ + + G A R R A E Sbjct: 58 VNHGIRGKEALRDQKTVQKICEEWKIPCCVYSYDVPRLAAEWKMGSEEAGRMVRRAAFEE 117 Query: 113 HAKTINAT----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 K ++ I AH +D ET+ R +G+ L +N RP Sbjct: 118 EKKKCTSSDRKIRIALAHNKNDVAETMLHHLARGSGIRGLA-------ALKPVNGEFIRP 170 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLR 227 L R +I ++ + I D SN +D + R R+R + + + K + Sbjct: 171 VLCLERNEIVDYIKETGIPSMTDSSNLEDDYTRNRIRHHILPLMTEEINAKAVAHMAEAS 230 Query: 228 VKVNNAVAMLIPKYLTV-----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 A K + + ++ ++ L Y +R G Sbjct: 231 ELFRQAEEYFKAKAEEMAAGCADGAGTYLLDKEFFAKETILQNYAVREILERLSGHR 287 >gi|330836936|ref|YP_004411577.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374] gi|329748839|gb|AEC02195.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374] Length = 499 Score = 197 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 33/337 (9%) Query: 6 IESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 ++ +R F S + I+VA SGG+DS LL L ++ S A+ V+H LR Sbjct: 34 LDRIRSFFSSRSWNPREGIVVAFSGGADSSALLYLLSRLVPASS-----LVAVYVNHRLR 88 Query: 64 ETAKD--EVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114 + E+ + + C++L I +V S + ++ G+ AAAR RY ++ Sbjct: 89 PAEELAGEIAHNTCFCAKLGIEIKIVDSGEDVISNRAAQEGDGIEAAARAVRYEILEAER 148 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + I T HT DDQ+ET+ R R + + + +N + RP L Sbjct: 149 ARLGFPWIATGHTSDDQMETILHRLLRGCSVAAL-------RGIEPVNGSVIRPLLDVSG 201 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVN 231 +RS L + +SW ED +N D + R R+R + + + + F Sbjct: 202 TVLRSLLKDKGLSWSEDSTNAMDDYTRNRIRHDLVPVIMDIFPSARETLYGFSKRAGAAA 261 Query: 232 NAVAMLIPKYLTV--HMRSIIAISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGY 284 + + +P++ + ++ D L +F L + G G+ Sbjct: 262 RFMEVSLPRFADFFTYDEGNVSAPLDFLRSLERHVMGEAVFGLWNLLHQKEGRNPRKLGF 321 Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++ER+ + +G+ + G F W R Sbjct: 322 AALERLQDMIAAGEGRIFAWGSEAFVADGRFWWHFRE 358 >gi|297545407|ref|YP_003677709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843182|gb|ADH61698.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 464 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 127/308 (41%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M I +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVISTIKRY-KMIKENDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R E A+ + ++V ++C +L++ V + A R RY E K Sbjct: 57 MIRGEEARRDAQFVENICCKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + R+ Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGAGMTGL-------IGIKPVNGNIIRPLIEIERK 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK-- 229 +I +L ++ + D +N +D ++R +VR F+ + + + + + ++ Sbjct: 170 EIEIYLKEKGLKPALDFTNYEDLYKRNKVRLKLIPFINETFEVDIIKNIYRMAKIILEEN 229 Query: 230 --VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIEKLRVQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|299139540|ref|ZP_07032714.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8] gi|298598468|gb|EFI54632.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8] Length = 395 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 24/257 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 + VA+SGG+DS LL+AL + + + SA V H LR A D+ +V ++ Sbjct: 40 AGDRVCVAISGGADSTALLLALKEANAAKESLGVVVSAAHVHHGLRGGEADDDEVFVREL 99 Query: 77 CSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C RL + +V + Q G+ AARE RY + I TAHT DDQ Sbjct: 100 CERLAVPLTVFHVDTAARQAAEREGVEEAARELRYEALRGLLPEGRVDAIATAHTLDDQA 159 Query: 133 ETVYMRSQRDYAEK-------------------GMGLSGMCDTILYDLNLWISRPFLRCR 173 ETV M+ R + G+G+ G + + + RP L R Sbjct: 160 ETVMMKLLRGAWTEGLGGISPVVQGLGIREQGLGLGVEGSGPRVQGSVGGRVVRPLLGVR 219 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R ++ +FL R W D SN D R RVR + + + ++ + Sbjct: 220 RAEVEAFLQARGQVWRTDSSNRDLELTRNRVRHELMPVLRSFNPCVDELLANMAAIARDE 279 Query: 234 VAMLIPKYLTVHMRSII 250 A + + + ++ Sbjct: 280 EAHWETELRRLLPQVLL 296 >gi|259501962|ref|ZP_05744864.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus antri DSM 16041] gi|259170139|gb|EEW54634.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus antri DSM 16041] Length = 467 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 23/312 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 F ++ RFF + ++VAVS G DSM LL + + + + V+H Sbjct: 15 QFKRHLQGGRFFDKR----DRVVVAVSAGVDSMVLLSLVTRLPAPLR---PTVTVAHVNH 67 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR + E Y+ C + V W +++ PQTG+ AAR RY +E + Sbjct: 68 ELRRQSWQEEEYLRQYCRAHDLPLLVKHWPRSAHPQTGIEEAARRFRYHFFAEVMAARQS 127 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++TAH +D ET+ M+ R L G+ + + RP L +E +R+ Sbjct: 128 PILLTAHHQNDLAETILMKLVRGGQL--SQLVGINAVRPF-TGGRLIRPLLPFSKEQLRA 184 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235 + + I W ED +N D R R R + ++ R ++ + +A Sbjct: 185 YAVAAGIRWYEDTTNQDLTISRNRYRHEIIPALERENPQFVQHLASYRQQLTDLLAWQDQ 244 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLF 293 + + V + + + + T +L+ + LP + ++ V+ Sbjct: 245 EVQGQLDRVQDGEELCLDKWG-QLPETAQRLVLQRWL-----EQRLPNIKQRLLDEVVGL 298 Query: 294 LKSGKRGCVSIG 305 LK+ S+ Sbjct: 299 LKNSTVPQRSLA 310 >gi|118602173|ref|YP_903388.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567112|gb|ABL01917.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 390 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 142/379 (37%), Gaps = 41/379 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I++ +SGG DS+ LL L++ +++ I +H L + + ++ Sbjct: 10 FLKDKQIVLGLSGGIDSVVLLYYLNTHYPNKT------RVIHYNHHLSQYCNEWNKFCEK 63 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C L I + + + + + R+ RY +S K ++ TAH +DQ ET+ Sbjct: 64 LCLSLNITYLSIDLYFNN-TSNIEENTRKKRYHSLSNSLKKN--EVLCTAHHQNDQAETL 120 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R KG L+ M + + RPFL + I + ++W ED SN Sbjct: 121 LLQLFRGSGIKG--LAAMPKEKPLGMGIH-YRPFLTISKFQIIDYAKNNKLNWIEDDSNK 177 Query: 196 DDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 + F R +R + +L + K Q +K+ +A + + + Sbjct: 178 NTNFMRNFLRLEILPKLSGAYKNLTRTLARSAKHQSEALKLIRELADIDMNTYHIINNAN 237 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRV 307 + ++ +++ + +LR + P + M +++ L K V + Sbjct: 238 RIDTNRLIKLETHRIKNVLRHHLNLL--NFLTPSDKIMHQIIELLYTKENTNPLVCWDKY 295 Query: 308 VIDRRANFLW--------------ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 I R N L+ + ++N + + + + L + Q Sbjct: 296 EIRRYQNELYFINKTLPRKNAFCPFYKELKNFKNFSIRYRQEGQ-----RIKLLGKTHTQ 350 Query: 354 IGPQSYRKADVPSGIPPII 372 + ++A++P + Sbjct: 351 SLKKVLQEANIPPWERNRL 369 >gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [alpha proteobacterium BAL199] gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [alpha proteobacterium BAL199] Length = 426 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 154/374 (41%), Gaps = 26/374 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL + +VDH LR A E V VC+ H ++ W + Sbjct: 1 MALLHLTDAWARGHGRA---LLVYTVDHGLRPEAVVEAGRVGQVCAMAGRPHRILRWLGT 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 KP +GL AAAR ARY L+++ + ++ AH +DQ ETV R R G L+G Sbjct: 58 KPGSGLQAAARRARYDLMAQACRDDGVVDLLLAHHLEDQAETVLHRIDRGTGPDG--LAG 115 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF---VR 209 M +D + + RP L + + + + W EDPSN+D RF R +R+ + Sbjct: 116 MARVRAFD-GVRLLRPLLDVPKVRLLATCRSVGVEWAEDPSNSDPRFARTELRQLAPVLA 174 Query: 210 DIDLHALYL--KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFY 266 D+ + ++ L R ++ A + ++ +V + + +++ +L L Sbjct: 175 DVGVTSIRLGRLASAMASARAALDGFTADWMAQHASVLLVGAVRMNRAVLVEAPVVLRRR 234 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKR----GCVSIGRVVIDRRANFLWITRAV 322 L+ + GG +ER++ ++++ + ++ ++ + L I R Sbjct: 235 LIDRALRAIGGNNYPLRSDGLERLLAWIEADRPETRTRTRTLAGCRVEIAGDGLTILRDW 294 Query: 323 RNLP-TLILYPEETTVWDGRYQFQNLSDSLIQIGP---QSYRKADVPSGIPPIIAQRALS 378 R +++ WD R++ +N + S +++G + +R+ AL+ Sbjct: 295 RQAARPVVIAAHGRGRWDCRFEIENPTSSPVRVGVCGGEGWRR------WRRTAQSSALA 348 Query: 379 SMPSKEGGKPLLAP 392 P L P Sbjct: 349 GRPMVAHAARLALP 362 >gi|242279442|ref|YP_002991571.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638] gi|242122336|gb|ACS80032.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638] Length = 340 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 127/308 (41%), Gaps = 23/308 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LV VSGG DS LL + ++L+ +S G + +DH LR+ + + +V ++C+ L + Sbjct: 40 LVGVSGGIDSTALL-IIATLLARKSGG--RVFCAHIDHNLRKESAGDRAFVEELCTELGV 96 Query: 83 A----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V+ ++ GL A R RY + K +A ++ AH D E V MR Sbjct: 97 PVKSLKADVAGYAAERSIGLEEAGRIIRYDFFKQCLKKFDADFLLLAHHIGDLSEDVVMR 156 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G + YD + RP L ++ + FL W ED SNT D Sbjct: 157 LIR-----GTGWPALAGMDAYDPKRKLLRPLLSTDKDSLEDFLRSIGCPWREDESNTCDD 211 Query: 199 FERVRVRRFVRDI------DLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHMRSIIA 251 + R R+R + + +L A +++K +L + VA I V I Sbjct: 212 YTRNRIRNHIMPLLYNENPNLGAGLIRLKNQAELDEAFWDEQVAEAIKHVQEVEDG--IL 269 Query: 252 ISQDILNI-DSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + ILN S L + + G G +++ L KSG +VV Sbjct: 270 LPCSILNKYHSALRLRIYKKILDDLGPGHTLFDSIILLDQGFLARKSGSTFQFPGKKVVK 329 Query: 310 DRRANFLW 317 +A L+ Sbjct: 330 VNKAGLLF 337 >gi|218961145|ref|YP_001740920.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus Cloacamonas acidaminovorans] gi|167729802|emb|CAO80714.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus Cloacamonas acidaminovorans] Length = 482 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 27/283 (9%) Query: 3 LSPIESVRFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 ++ E+++ +++ +L+ SGG+DS +L + R + I Sbjct: 1 MTIAEALKRLEKNIKENELIHNGDKLLLGCSGGADSNAMLYLFSRL---RVPLNLTLLVI 57 Query: 57 SVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 ++H +R + + +V +C L I ++ L AR+ R+ + ++ + Sbjct: 58 HINHQIRGAESDADEDFVKQLCQDLNIP-VIIRKIVVPETGNLENQARKLRFEVFNKILE 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + N I+ AH +DQ ETV + R G G+SGM + + + P L R+ Sbjct: 117 SYNFDKILLAHQKEDQAETVMLNFLR-----GAGISGMAG--IKGITGKVVHPLLCFSRK 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAV 234 ++ L Q ISW D SN + +F R +R + +K L + A Sbjct: 170 ELEEVLKQAGISWRTDSSNLETKFRRNLLRNEIMPQLEKEFNPALKSHLFFLAELFSQAE 229 Query: 235 AMLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLR 269 + + T R I I +L + +YL R Sbjct: 230 TIFKQRSKTQFRRLCIDIQPGKVVFELTPLLKLSPIERYYLFR 272 >gi|42572523|ref|NP_974357.1| RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen bonds / nucleotide binding [Arabidopsis thaliana] gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana] Length = 660 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 28/309 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKD 68 L I + VSGG DSM L + ++ ++ G I AI VDH LR+ +KD Sbjct: 81 LKPHNRIALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKD 140 Query: 69 EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125 E V S++ I + S W + +P+ G L AARE RY +IS +++ A Sbjct: 141 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIA 200 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174 H DDQ E +R R G+ + I + + ++ + RP L + Sbjct: 201 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWK 260 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKV 230 ED+ W EDP+N F R R+R + +++ L + + + R V Sbjct: 261 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFV 320 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSM 287 + LI + +TV + + + LN L + A+ + + Sbjct: 321 DKVCTDLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTS 380 Query: 288 ERVMLFLKS 296 + ++ ++++ Sbjct: 381 KLLLNYIRA 389 >gi|260663744|ref|ZP_05864632.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN] gi|260551795|gb|EEX24911.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN] Length = 449 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 75/276 (27%), Positives = 115/276 (41%), Gaps = 19/276 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M SP+ S RFF S ++VAVS G DSM LL L ++ R + V+H Sbjct: 8 MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLRR---PRLIVAHVNH 59 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 LR + E ++ C + + V W ++ P G+ AAAR RY+ + A Sbjct: 60 HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + TAH DD ETV M+ R + +G + RP L ++D+R Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLH------ALYLKMKKFQDLRVKVNN 232 + ++W ED +N D R RVR R++ + + AL ++ DL N Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRYRYLPSLSVENPRLVTALASDAEQINDLLGLANE 236 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + L T S+ A + + + L Y L Sbjct: 237 RLGELDATLRTERGFSLAAFRRLSESTQRSYLRYYL 272 >gi|289551692|ref|YP_003472596.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01] gi|289181223|gb|ADC88468.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01] Length = 430 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 21/253 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI++AVS G DSM LL AL + D K + + V+H LRE + +E R+ C + Sbjct: 12 DHIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQ 68 Query: 80 LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++++ + S + +R+ RY +NA +++TAH DDQLET++ Sbjct: 69 HQLSYDIKHLDLSHLVASGKSIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQLETIF 128 Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R A + +G+S + Y I RP L+ ++DIR F ++ + ED SN Sbjct: 129 YRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYEDCSNH 184 Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTV-HM 246 +++ R +R + +D+ L LK+K + D ++ ++ N + I Y+ + H Sbjct: 185 INKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKTSRFIQDYVNMNHN 243 Query: 247 RSIIAISQDILNI 259 ++I + N Sbjct: 244 HTMITCPRTRFNC 256 >gi|78048470|ref|YP_364645.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036900|emb|CAJ24593.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 450 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 123/353 (34%), Gaps = 17/353 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+ SGG DS LL L + R G A+ V H L A + C Sbjct: 29 PPGPVLLTYSGGMDSSVLLHLLAATPRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 85 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L++ +V + ++ +GL A + + AH DDQ ET + Sbjct: 86 DTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLL 144 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ R +G+ + + RP L R D+ ++ + + W EDPSN D Sbjct: 145 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLHAYAHAQGVRWIEDPSNADP 201 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254 R +R +R V + +A A+L+ + + + + A+ Sbjct: 202 RHDRNFLRSQVVPLLQQRWPQAPDALARSAQLSADASALLLQQDMALLPSVQTASGALDL 261 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L L + LP ++ER + + ++ C + V + R Sbjct: 262 QALRAQPVERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQGVEVRRW 321 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 L++ R P+ + WDG + +++ + P Sbjct: 322 RQCLFLNRPAAAWPS-----DWHAQWDGAAPLHLPDGAQLRLLGAPGLRFAQP 369 >gi|295089879|emb|CBK75986.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Clostridium cf. saccharolyticum K10] Length = 464 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 131/353 (37%), Gaps = 45/353 (12%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ L ++V +SGG+DS+ LL L + RS I+ A+ V H LR Sbjct: 3 EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLSDM---RSSLSIRLRAVHVHHGLR 59 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHA---- 114 + A + + ++C +L I + + + A R RY + A Sbjct: 60 GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 119 Query: 115 ----KTINATL---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + A L I AH DD ET+ R +G+ + + + R Sbjct: 120 DKEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 172 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223 P L R++I +L + +S+ D +N + + R R+R + + + + + + Sbjct: 173 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 232 Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273 ++ + + ++L + ++A+ L ++ Y++R + + Sbjct: 233 GEIIGEADQFFRERAGEFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 292 Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 G + +E ++ L ++G + G N + + Sbjct: 293 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 345 >gi|67924269|ref|ZP_00517706.1| PP-loop [Crocosphaera watsonii WH 8501] gi|67853884|gb|EAM49206.1| PP-loop [Crocosphaera watsonii WH 8501] Length = 322 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 66/332 (19%), Positives = 129/332 (38%), Gaps = 24/332 (7%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ + V ++ L + +++L+AVSGG DS+ LL + + + + Sbjct: 1 MWTNIHARVHQTLKDSCILPHKSNLLIAVSGGQDSLCLLKIMIDLQEKWGW---NIAIAH 57 Query: 58 VDHCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 DH + +V + + I + K K AAARE RY + E A+ Sbjct: 58 CDHGW--ASDLGIADHVEKIANNWNIPFYLKVAKAMKET---EAAAREWRYQSLVEIAEE 112 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I+T HT D+ ET+ R G+G + N+ + RP L+ R + Sbjct: 113 NDCREIVTGHTLSDRSETLLYNLIRGAGSNGLG--ALTWKRPLTNNINLVRPLLKVSRGE 170 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F Q + ED +N + + R R+R+ + ++ +V A + Sbjct: 171 TLEFCQQFALPIWEDAANANLDYARNRIRQELVPYLKENFNPNVETTLSQTSEVLKAESD 230 Query: 237 LIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + S + LN + L ++R A +S P + +E Sbjct: 231 YLEAEANKILLSAVNDHNSKLNREVLKGVPLALQRRVIRQFLAKIM--VSKPNFEQIEET 288 Query: 291 MLFLKSGKRGCVSI--GRVVIDRRANFLWITR 320 + + + ++ S G+++++ N++ R Sbjct: 289 VNLIDAPRKSRTSSFPGKIMLEVEENYIVQKR 320 >gi|167039445|ref|YP_001662430.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514] gi|300915475|ref|ZP_07132788.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561] gi|307725230|ref|YP_003904981.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513] gi|166853685|gb|ABY92094.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514] gi|300888535|gb|EFK83684.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561] gi|307582291|gb|ADN55690.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513] Length = 458 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56 Query: 61 CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R A + ++V D+C +L++ V + A R RY E K Sbjct: 57 MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + RE Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +L ++++ D +N +D ++R +VR + + +Y K + Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKMKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|256751848|ref|ZP_05492720.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256749255|gb|EEU62287.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 458 Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56 Query: 61 CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 +R A + ++V D+C +L++ V + A R RY E K Sbjct: 57 MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH +D +ETV++ R G+ + +N I RP + RE Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227 +I +L ++++ D +N +D ++R +VR + + +Y K + Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + I A + + + L+R+ G I Y + Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKMKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289 Query: 288 ERVMLFLK 295 E V+ L Sbjct: 290 EDVLSLLD 297 >gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10] gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10] Length = 434 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 35/309 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78 A L+AVSGG DSM LL S ++F V++ LR + + R V + C+ Sbjct: 21 ARYLLAVSGGVDSMVLLYLF-------SHSNLEFEVAHVNYRLRGVDSDADQRIVEEFCA 73 Query: 79 RLRIAHSVVSW--KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + KP + ARE RY + + I+TAH +DQLET Sbjct: 74 KHHLTLHVYEVGDHDGKPANSVQLWARELRYGFFRKIQIQSDLQYIVTAHHLNDQLETFI 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G LSG+ I RP L + DI F QR+I + ED SN+ Sbjct: 134 INLSRASGLNG--LSGIPS-----NENGILRPLLNFTKNDIYDFAAQRSIQFGEDVSNSK 186 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-------VAMLIPKYLTVHMRSI 249 + + R +R + L + F ++ A ++ + + ++ SI Sbjct: 187 NDYLRNFIRNEIAHRLLETNTGFLPNFSRTIHYLDQAKDFIHEQISAVEDEIISHSDDSI 246 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + + F +LR G+ S V + + K C ++ Sbjct: 247 LIDREKFGQQSDFVKFEILRKL-----------GFDSATEVQKIVAAEKGKCFKSADYIL 295 Query: 310 DRRANFLWI 318 N L + Sbjct: 296 TVDRNHLIL 304 >gi|189499568|ref|YP_001959038.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1] gi|189495009|gb|ACE03557.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1] Length = 334 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 35/336 (10%) Query: 10 RFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R F+ L H+L AVSGG DSM LL L +V RS K++ S + LR Sbjct: 10 RKFLEQLTVRKLVSRREHVLAAVSGGPDSMALLYLLCAV---RSVLKVRISVAHCNFQLR 66 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118 E ++ + +V C +L + V + K + + AR RY E Sbjct: 67 GEESELDEEFVRSECEKLGLECFVRRFDTQKDARRLKKSIEETARIERYGFFHELIAKDG 126 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + T H D ETV R + G+ + + + RP L ++ DI Sbjct: 127 FDRVATGHHVSDNAETVLFNLIRGSSISGL-------KGIRSEHGHVIRPLLLMQKRDIT 179 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 ++ ++ IS+ D SN +R +R + + K ++ + A + Sbjct: 180 RYIGEKEISYRVDSSNIGIEPDRNFIRNKIIPLIEERFNNKF----LPSLQRLSEHAGEL 235 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMER 289 ++L +H I+ + + D+ L LR +I +++++ Sbjct: 236 EEFLELHFERIVREDEGLALKDNRLFVPSLRKLTVFERKEIFKRALGKLGCEYSSKALQQ 295 Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRN 324 + L++ V + + I + +L+ TR N Sbjct: 296 LAELLQTQPGRTVQLAAGLEILWKGKYLYFTRKSGN 331 >gi|289675284|ref|ZP_06496174.1| PP-loop [Pseudomonas syringae pv. syringae FF5] Length = 276 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 8/255 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + S + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P L AAR+ARY+ SE + + +++T DDQ ET+ R R Sbjct: 88 FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R+ + + + ++W EDPSN D +F R Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKHLEDYAHRHGLNWIEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L L + A S + + Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261 Query: 264 LFYLLRVSAAICGGQ 278 L + +SAA Sbjct: 262 LGPIAALSAARQRNA 276 >gi|237710749|ref|ZP_04541230.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455471|gb|EEO61192.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 434 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 122/336 (36%), Gaps = 42/336 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF I+ + +LVA+SGG+DS ++L A + Sbjct: 1 MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V+++C L +A V + S+ + AARE RY + K Sbjct: 54 HLRGEESDRDERFVNELCKGLGVALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AH DD +ET + R G+ + N I RP L R+ Sbjct: 114 ERGGAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 DI +L + D +N D + R ++R R + ++ ++ D+ + Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226 Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 N + + + +I + ++ + + LLF +L G+ S+ Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273 Query: 288 ER--VMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + V L + I R L I R Sbjct: 274 QAGDVFRSLSAQSGKRFVSAGWEILRDRTELIIRRR 309 >gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242] gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242] Length = 332 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 19/317 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+AVSGG DS+ L++ RS + +VDH LR A+ E V Sbjct: 13 LAPHRSLLLAVSGGPDSVALMLLAAQWPDRRSH---DIAVATVDHGLRPEARREAEQVGA 69 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L H V++W+ KP+T + AR ARYAL+++ A I A I+TAH DDQ ET+ Sbjct: 70 WANALGFPHHVLTWQGEKPRTRVQERARTARYALLADCAGRIGAGAIVTAHHADDQAETI 129 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R GL+GM + + RP L R+ + + + + DPSN Sbjct: 130 LFRLTRGSGV--AGLAGMTAE-SRCGGVALLRPLLGLRKAALEEICRRCDHDYFRDPSNI 186 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D+ + R R+R+ +R + L A L + L + +A A L R+I+ + + Sbjct: 187 DEHYARARLRK-LRPL-LAAQGLDDEALLRLGQRAAHADAALNFCAENARERAIVDVDSE 244 Query: 256 ILNIDSTLLFYL----LRVSAAICGGQISLPGYRSMERV-------MLFLKSGKRGCVSI 304 D+ L L ++ A +++ +ER+ + L G + ++I Sbjct: 245 TARFDAAALRELPPEIVQRLLAGEIARLAPLAPLRLERLERAARRLVAALADGAKLRLTI 304 Query: 305 GRVVIDRRANFLWITRA 321 +++D + + + A Sbjct: 305 ADLLLDAQGAHVTLRPA 321 >gi|262380273|ref|ZP_06073428.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] gi|262298467|gb|EEY86381.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] Length = 454 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 23/312 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L+ SGG DSM LL + ++ R AI VDH L+ ++D + Sbjct: 24 LEQFPPETSFLIGCSGGMDSMLLLYFMAALCPGR------IRAIYVDHQLQAQSRDWGIH 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V C +L + V + L AREARY +H K+ +++ AH DQ Sbjct: 78 VQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQAYHQHIKS--GEVLVLAHHQQDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV +R G+ D + I RP L RE I + Q NIS+ +DP Sbjct: 134 ETVLLRLFSGTGISGLSAMKQLDQR---HEMPIWRPMLSLSREQICQWAEQLNISFIDDP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN + ++R R + + L + + KM++ + ++ + L +++ Sbjct: 191 SNNNTHYDRAWCRTMLWPL-LASRFSKMQQAVTRTASLMQDADEILQEVLQEDLKNCGNA 249 Query: 253 SQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305 Q L + LL SA + G I P + +ER+ ++ K+ + + Sbjct: 250 QQLDLARLKLLSKPRQRQLL--SAWMKGEGIYRPAFEMVERIQHEVIAAKADAQAALHWN 307 Query: 306 RVVIDRRANFLW 317 + R L+ Sbjct: 308 KYYYVRYHGQLY 319 >gi|294789627|ref|ZP_06754861.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453] gi|294482428|gb|EFG30121.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453] Length = 427 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 105/299 (35%), Gaps = 13/299 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I+V SGG DS+ LL L + F SAI V H L + A + D C Sbjct: 16 RIIVGFSGGLDSVVLLHLLAMARTQYVF---DLSAIHVHHNLSQNADKWADFCLDFCENW 72 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ + + + G+ AAA A + ++ AH DDQ+ET ++ + Sbjct: 73 KIPLTIKYVQVNSEKLGVEAAA----RAARYAVFREYAGDVLALAHHRDDQVETFFLAAL 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+ + +L I+RP L R I + ++ D SN + F Sbjct: 129 RGSGIRGLAAMAENQ---FSGSLKIARPLLHFSRHQIEQYAQHNQLTHITDDSNDNPIFL 185 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R +R L + + + +A++ + + +I + Sbjct: 186 RNWLRHNGLPNIRQRLPHTDQHIIAAIANLQDELALINEITESDYQHIYQNQKFNIFHWR 245 Query: 261 STLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 R + Q L P S+ L R ++ + V L+ Sbjct: 246 ELSPARR-RQQLVLFAKQFELGTPRRVSVMNFESILLHHDRAEWTLPQGVAVAYGGVLF 303 >gi|320530147|ref|ZP_08031217.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399] gi|320137580|gb|EFW29492.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399] Length = 480 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 24/333 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + F L HILVA SGG DS+ LL L R G + V+H + Sbjct: 22 VEHVLRAHDFFSPL---RHILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGI 75 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R ++ + R+V D C+ I + + + L +AR RY + + Sbjct: 76 RGAASRADARFVKDYCAVQGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREEC 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I TAH DD ETV MR R G+ + + + + RP L R +I Sbjct: 136 GCDCIATAHHADDLAETVLMRILRGTGTAGLA-------AIREWDGVLLRPLLTATRAEI 188 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233 S+ R ++ D +N R R+R + I A+ + + L + + Sbjct: 189 VSYARARALAPRSDETNEMCDAMRNRIRNKLLPILRADYNPAVGAALVRLSTLAREEDEF 248 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV--SAAICGGQISLPGYRSMERVM 291 +A L L + + + + L +LR+ A GG+ + R + Sbjct: 249 IAELSADALRRAEDAGGLSTAVLCGLHPALQRRVLRLYWQKATAGGKDFSYLHEEQMRSL 308 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 +F++ + + G + + + + ++N Sbjct: 309 IFVRGVAQIDMPHGYTAVCQYGRLILKKKEIQN 341 >gi|119356415|ref|YP_911059.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266] gi|119353764|gb|ABL64635.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266] Length = 325 Score = 196 bits (499), Expect = 6e-48, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 134/332 (40%), Gaps = 30/332 (9%) Query: 4 SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E +R +R LV H+L+AVSGGSDSM LL ++ R + SA+ + L Sbjct: 7 KFLEQIR--IRQLVSKEDHVLLAVSGGSDSMALLHLFCAI---RRAVPCRISAVHCNFRL 61 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E + ++ R+V + C L + V + + +T + AR RY Sbjct: 62 RAEESDEDERFVQEACLALGVTCYTVGFDTLKMAGEWKTSIEETARILRYRYFDTLLSEH 121 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 ++ T H +D ET+ R + G+ + I RP L + +I Sbjct: 122 GMKVVATGHHVNDNAETMLFNLFRGTSLLGL-------RGIRAKRGKIIRPLLLVHKVEI 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233 ++ +++I++ D +N +R +R + + H L +++ + ++ Sbjct: 175 LGYIDEKHIAFRIDATNFGIDPDRNFIRNRIIPLIEERFSHKLLPSLQRLSEQAGELEEF 234 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP----GYRSMER 289 + + L ++ S +L + +L L + + +++++ Sbjct: 235 LELYFENLLADKPG--LSASNGMLEVKDLVLLSLFE-QKEVFKRALREHDVKCDSKTLDQ 291 Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITR 320 ++ LK+ V + ++V+ + L I R Sbjct: 292 LVRLLKTQPGRMVRLSAQIVVLWKGGTLHILR 323 >gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens SBW25] gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens SBW25] Length = 440 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 104/306 (33%), Gaps = 20/306 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS + + A+ V H L+ A + +C L + Sbjct: 25 IAFSGGLDSTV--LLHLLANLANTDTLPPLGAVHVHHGLQTAADAWPAHCQSICDNLGVP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + +P L AAR+ARY E T +++T DDQ ET+ R R Sbjct: 83 LRVMRVQV-QPGASLERAARDARYQAFIEV--TGAGQVLLTGQHRDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++ RP L R ++ ++ + + W EDPSN D RF R Sbjct: 140 GVRGLSAMPAQRPLAAG---YLVRPLLEVSRAELEAYAEEHQLEWIEDPSNADSRFSRNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + ++ A +L + + + L + S Sbjct: 197 LRHRVLPTLTERWPQAVSSLARTAEHLSEAQGLLDELAVMDLQAADQPSAFPWLRLRSLT 256 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L LR + + R+ + K + + + R Sbjct: 257 L-APLRELSDARQRNALRHWLTPLTRLPDSDHWAGWHSLRDAKDDAQPLWRLADGELHRC 315 Query: 313 ANFLWI 318 +W Sbjct: 316 GQRIWW 321 >gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV] gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV] Length = 425 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 22/267 (8%) Query: 10 RFFVRSLVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + F + L +L+A+SGG DSM LL L+ R +I+ V+H +R Sbjct: 4 QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKY---RKKLEIEIYLAHVNHGVR 60 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 E + E + + +L ++ S+ AR+ RYA + N T ++ Sbjct: 61 EESDFEEEKLKKIAKKLGVSIFTSSFSGPFS----EQKARDFRYAFFKKIMLEENCTALV 116 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ ET++MR R + +SGM + + N + RP L ++ + Sbjct: 117 TAHHADDQAETIFMRILRGS--RLFHISGMKEKQKFA-NGELIRPLLSFQKSNFPP---- 169 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I ED +N ++ + R R+R + K +L +++ L Sbjct: 170 --IFHFEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKHLIELGTEISQMQDALAYLTKN 227 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRV 270 + ++ ++ S LL L+ Sbjct: 228 IVATNLQEFQSQPYSVQSFLLQAYLKK 254 >gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS 6054] gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 484 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 85/428 (19%), Positives = 155/428 (36%), Gaps = 56/428 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ +LVA+SGG DS+ L L I +AI++DH R + +E + V + Sbjct: 23 PSRVLVALSGGVDSICLTYLLSQYSRLYCNNAIAINAITIDHGYRSGSNEEAKAVGKLVE 82 Query: 79 RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + H V + K + AR RY E +A+ + AH +DQLET Sbjct: 83 KWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLNDQLETF 142 Query: 136 YMRSQRDYAEKGM-GLSGMCD-------TILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 R Q + + G+ GL + + RP L + +I Q+NIS Sbjct: 143 IQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKERISVIRPLLSFEKSEIIDTCKQQNIS 202 Query: 188 WCEDPSNTD-DRFERVRVRRFVRDIDLHALYLKMK-------KFQDLRVKVNNAVAMLIP 239 W ED +N D + +R +R + L K K + ++ V L Sbjct: 203 WFEDSTNMDINLTKRNYLRHLINVAIPEKLAANDKYISISKAKLIESHEEITEMVESLEE 262 Query: 240 KYLTVHMRS---------------IIAISQDILNIDSTLLF--YLLRVSAAICGGQISLP 282 K ++ + + +S DIL D+ ++ YL ++ + Sbjct: 263 KVDSLDQMAKTNGLLAVDPRNGSLSLKLSNDILTEDNIVIVGKYLYQLLYPFSSIRHYHW 322 Query: 283 GYRSME-----RVMLFLKS-GKRGCVSIGRVVIDRRANFLW------------ITRAVRN 324 Y +E R++ F S G + +I + N + + + Sbjct: 323 AYAKLERQLVPRIVQFAHSTGDSKLTYLNLTIILKNENGITTLDISRQPILRGALKEIAY 382 Query: 325 LPTLILYPEETTVWDGRYQFQNLSD--SLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS 382 L + T++D R+ + + + ++ Y + S + P + Q+ Sbjct: 383 EVDLTAEWSKWTLFDRRFWLRFKTSLFNGCKVTVAPYNHKEHKSKLHPDLEQQKALRFSK 442 Query: 383 KEGGKPLL 390 P++ Sbjct: 443 DMNNVPVV 450 >gi|15672001|ref|NP_266175.1| hypothetical protein L1002 [Lactococcus lactis subsp. lactis Il1403] gi|61216729|sp|Q9CJH4|TILS_LACLA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|12722856|gb|AAK04117.1|AE006241_6 cell cycle protein MesJ [Lactococcus lactis subsp. lactis Il1403] Length = 423 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 117/272 (43%), Gaps = 20/272 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ +F + + IL+A+SGG DSM L L+ + + I+ ++H Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LRE +K E + ++ ++L++ V + + AR+ RY + N + Sbjct: 61 LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + + RP L+ +E++ + Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFA-GGQLIRPLLKFTKEELDA-- 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 ++ ED +N + R R+R + + DL ++ A+A++ K Sbjct: 172 ----QTYYEDSTNQGLDYFRNRIRNQLIPELKKENPQFSQSISDLSSEIKKALAVINQKI 227 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + + S+ ++ L ++L+ A Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259 >gi|306820236|ref|ZP_07453878.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551733|gb|EFM39682.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 472 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 29/270 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +E + ++ ILVA+SGG+DS+ LL L + + + A +DH Sbjct: 5 LVKETVEREKLIEKN----DRILVALSGGADSLCLLDILIRLKDE---YNLTLYAAHLDH 57 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115 +R A + Y D C + + + + K + G+ AR RY+++ E + Sbjct: 58 MIRGVDAVRDALYCYDFCKKNDVPFFLRAVDVVNKAREEFRGVEETARTERYSMLFEIKQ 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +N I AH DDQ ET+ M+ R +G L GM I RP L ++ Sbjct: 118 RLNIDKIAVAHNLDDQAETILMKLMRGSGLQG--LRGMDYKR-----DDIIRPLLDIYKK 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I + + + D +N +D++ R ++R L + KK+ +K+ + A Sbjct: 171 NINKYCEENCLEPRVDKTNFEDKYTRNKIR-------LELIPYIEKKYSANIMKILSRTA 223 Query: 236 MLIPK---YLTVHMRSIIAISQDILNIDST 262 +I Y+ R ++++I N D Sbjct: 224 NIIRDDHNYIEKVARENYDLAKNIKNKDEL 253 >gi|241888931|ref|ZP_04776235.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC 10379] gi|241864180|gb|EER68558.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC 10379] Length = 438 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 10/249 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + +SGG DS+ L L + + + A ++H LRE + +E +V + Sbjct: 11 DKIALGLSGGVDSIALFHLLVT---EYKESYKELVAFHINHGLREQSYEEAEFVENFVKN 67 Query: 80 LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + T AR+ RY E + ++TAH +DQ+E + Sbjct: 68 YNVKFYKKELNMKDQIRDSHTSEEMLARKLRYGAFEEMSSLEGGVKLITAHHKNDQVENI 127 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR + + M + L + RP L + D+ + + ++ + D +N Sbjct: 128 LMRLLSGRSMD---YNLMIEEKTTIGKLAVYRPLLNVLKADLEQYADKNDLKYYVDSTNF 184 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D + R +R + + + N L K L +I++ +D Sbjct: 185 DTDYTRNNIRHNIVPLLNDVNAASFDNLINFSSYYQNINTELKHKVLEAKNDYVISLEED 244 Query: 256 ILNIDSTLL 264 + +D L Sbjct: 245 KVELDKEKL 253 >gi|329768244|ref|ZP_08259745.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341] gi|328837443|gb|EGF87072.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341] Length = 438 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 105/288 (36%), Gaps = 17/288 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + +SGG DS+ L L + + ++H LRE + +E +V + Sbjct: 11 DKIALGLSGGVDSIVLFHLLVT---KYKESYKELVVFHINHGLREQSYEEAEFVENFVKN 67 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + T AR+ RY E + ++TAH +DQ+E + Sbjct: 68 YNVKFYKKELNMNELARDSHTSEEMLARKLRYEAFEEMSSLEGGVKLITAHHKNDQVENI 127 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR + + M + L + RP L + ++ + + N+ + D +N Sbjct: 128 LMRLLSGRSMD---YNLMIEEQTTIGELEVYRPLLSVLKAELEQYADENNLKYYVDSTNF 184 Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D + R +R + + L +Q++ ++ N V Y+ Sbjct: 185 DTDYTRNNIRHNIVPLLKDVNAASFDNLINFSSYYQNVNTELRNKVLENKADYVIFEAEG 244 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 +A++++ L ++ Y L I R++ ++ LKS Sbjct: 245 KVALNKEKLLKNTKEEVYFLLRDILANNFSIFDVKQRALFAIIEDLKS 292 >gi|315660323|ref|ZP_07913176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus lugdunensis M23590] gi|315494612|gb|EFU82954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Staphylococcus lugdunensis M23590] Length = 430 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 21/252 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 HI++AVS G DSM LL AL + D K + + V+H LRE + +E R+ C + Sbjct: 12 DHIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQ 68 Query: 80 LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++++ + S + +R+ RY +NA +++TAH DDQLET++ Sbjct: 69 HQLSYDIKHLDLSHLVASGKSIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQLETIF 128 Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R A + +G+S + Y I RP L+ ++DIR F ++ + ED SN Sbjct: 129 YRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYEDCSNH 184 Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTV-HM 246 +++ R +R + +D+ L LK+K + D ++ ++ N ++ I Y+ + H Sbjct: 185 INKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKISRFIQDYVNMNHN 243 Query: 247 RSIIAISQDILN 258 ++I + N Sbjct: 244 HTMITCPRTRFN 255 >gi|167772098|ref|ZP_02444151.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM 17241] gi|167665896|gb|EDS10026.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM 17241] Length = 467 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 125/338 (36%), Gaps = 18/338 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + ++ F L + AVSGG+DS+ LL L + L + A ++H Sbjct: 1 MNHNARATIEEF-SMLAQGDTVAAAVSGGADSVALLDFLCAQLD----LGLTVRACHLNH 55 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 CLR E + + + V +C++ +A V L AAREARYA E A+ Sbjct: 56 CLRGEESDRDEQLVRTMCAQYGVALDVRRVDVRALAHTRGLSLETAAREARYAFFEEVAR 115 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 T I TAHT D ETV + R G G+ G+C + I RP + C R Sbjct: 116 THGC-KIATAHTLSDAAETVVLNLAR-----GTGIVGLCGIPPVRGD--IVRPLIGCTRA 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 ++ + + D +N D R +R + ++ + + Sbjct: 168 QTEAYCAAHGLCYVTDSTNLTDSCTRNHIRHNILPQLFRVNPGALEAVGRMTAALRRDAD 227 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L R+ D+ + + RV AA+ G + + + + L+ Sbjct: 228 YLSGAAREAGARAARGEGYDLGALRALHPALRARVIAALLEGGGAERSAQRIASIDAMLE 287 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 G+R + +G + L + P + P Sbjct: 288 GGRRRVMQVGPSLYVVADGGLLCLERRKKTPLEPIEPR 325 >gi|312978414|ref|ZP_07790156.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05] gi|310894757|gb|EFQ43829.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05] Length = 417 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA S G DSM LL L ++ SF A DH LR + EV + + Sbjct: 14 LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C++ +I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + Sbjct: 71 CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M ++ + + RP L ++++ + +R I + D +NT Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251 +D R R+R V + + L +F + ++ + + TV Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247 Query: 252 ISQDILN 258 I D LN Sbjct: 248 IKTDNLN 254 >gi|288802304|ref|ZP_06407744.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella melaninogenica D18] gi|288335271|gb|EFC73706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella melaninogenica D18] Length = 456 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + ++ F+ S L A LVA+SGG+DS+ LL+ L + + A+ + L Sbjct: 2 LNKIKRFIASEHLLQVDALYLVALSGGADSVALLLCLKEL-------GYRVEAVHCNFNL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + ++ D+C R I V + + + AARE RY + + + Sbjct: 55 RGEESLRDEQFCEDLCQRENIPFHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEAL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H +D +ET+ + R G+ + N + RP L R++I Sbjct: 115 GANGVCVGHHKEDSVETILINLVRGTGLSGL-------MGIRPRNHDVIRPLLCVTRQEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L Q+ +S+ D +N D R ++R + A+ ++ V Sbjct: 168 EDYLRQQAVSFVTDSTNLIDDVVRNKIRLNVLPQLSEINPSVKDAILTTANHLSEVDAIV 227 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 ++ K + S + N L ++R Sbjct: 228 QESLKEAFGKAVCFINSVTQVSSNSLSNEPFQLNLSVIRA 267 >gi|256422772|ref|YP_003123425.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588] gi|256037680|gb|ACU61224.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588] Length = 445 Score = 196 bits (498), Expect = 7e-48, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 136/348 (39%), Gaps = 37/348 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F IE + F+ +L+AVSGG DS+ + + +F+ + Sbjct: 7 FKIFIEKEQLFM----PDQSLLLAVSGGVDSVVMAHLFKA-------AGYRFAIAHCNFQ 55 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116 LR + + + + +D+ RL++ V + + + AARE RY + + + Sbjct: 56 LRGDESVRDESFAADLARRLQVTFHQVRFDTEAYTESKRVSIQVAARELRYEWLEQTREQ 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I+TAH D +ET+ M + GL G + + RP L +E+ Sbjct: 116 GGYSYIVTAHHMQDSVETLLMNLSKGTGI--AGLHG-----ILPKQGKLLRPLLFAEKEN 168 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVK 229 + ++ + +I + ED SN ++ R R V + A + +++F++ + Sbjct: 169 LIAYAAEHHIPYVEDSSNLTVKYTRNFFRHKVIPVMQEANPGTVVNIASSIERFREAELL 228 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 N A+ I + +T + + I L + L + A + + + Sbjct: 229 YNEALQRHIKRLVTQKGNTYM-IPVLKLQKTTPLQ------TVAWEIFRRYGCTAAQLPQ 281 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337 V+ L SG V G I R +L IT V I+ +E V Sbjct: 282 VLELLNSGSGKMVETGSHRIIRDRQWLLITPLVEEQAATIVIEKERGV 329 >gi|302878626|ref|YP_003847190.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2] gi|302581415|gb|ADL55426.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2] Length = 449 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 121/331 (36%), Gaps = 17/331 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L + IL+ +SGG DS+ LH + K SA+ V H + A + Sbjct: 23 QLPEGSSILLGLSGGVDSVV---LLHLLHHLAPRFSWKLSALHVHHGISRNADSWAEFCR 79 Query: 75 DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C R +I + G+ AAAR R+A + AH DDQ+E Sbjct: 80 LLCERHQIPLCIERVDIAPLRSQGIEAAARRLRHAAFD----AQRCDFVALAHHADDQVE 135 Query: 134 TVYMRSQRDYAEKGMGLSG-MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T++++ R KG + + RP L+ R++I ++ ++ + W ED Sbjct: 136 TLFLQLLRGAGVKGASAMPVLSQPKKTQRTHRLVRPLLQFTRDEILTYAAEQRLEWVEDE 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D+R+ R +R + + A ++L ++I Sbjct: 196 SNADERYPRNFLRHRLLPELATQFPSYRETLTRSTSHFAEAASLLDELARIDAAGALIDA 255 Query: 253 SQD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGR 306 + + LLR G +P ++ ++ L + C+ G Sbjct: 256 CLSVTALQALSHARAKNLLRYFFDQQG--APMPHAAKLDDLLQQLCSAREDAALCIDFGG 313 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV 337 + R +++ +A + ++ + E + Sbjct: 314 WQVRRHQGRVYVLQAFASFDGVLQWQGEAIL 344 >gi|169335539|ref|ZP_02862732.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM 17244] gi|169258277|gb|EDS72243.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM 17244] Length = 464 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 75/402 (18%), Positives = 164/402 (40%), Gaps = 27/402 (6%) Query: 4 SPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++ V+ F+ +L+ +++A+SGGSDS+ LL L+++ +D F A ++H Sbjct: 7 KIVKKVKDFILKNNLIKNKDKVMIALSGGSDSVCLLHILNTLKNDMGF---SLYAFHLNH 63 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 +RE AK + ++V D+C + + S + GL R+ RY LI++ K Sbjct: 64 NIREEAKRDEKFVLDLCKTYDVPLFLESEDMPALHEDSSLGLEEIGRKKRYELINKIMKE 123 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + TAH D E++ + R +G+ + N I RP L +E+ Sbjct: 124 NHIDKAATAHHLLDHSESMILNMVRGSGIRGL-------RGISVKNDNIIRPILNLTKEE 176 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNA 233 I ++ + + + D +N D + R +R + +Y + + +V++ Sbjct: 177 ILCYIEENELEYVTDVTNFDTDYSRNNIRHNILPHLEEINDNVYNHFFELSSVAGEVDDL 236 Query: 234 VAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + L + + S + IS +D ++ + +L G + + V L Sbjct: 237 LNELASEVNIIKEDSKVYISLKDYYSLHIAVKKQILFNMLNQLGIKKDINSRAINNIVDL 296 Query: 293 FLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351 K+ +++ +V RR + L+ ++ I + + +++ + +D + Sbjct: 297 IEKNNTSFEINLINNIVAKRRYDKLYFEYLSKDKRESINWEVDNK---NKFEIK-YNDII 352 Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393 I++ + + R + +++ G +PF Sbjct: 353 IKLEKKDVLDKNSEDKYVDYDKIRGKLFLRTRKDGDK-FSPF 393 >gi|147669868|ref|YP_001214686.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1] gi|289433082|ref|YP_003462955.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT] gi|146270816|gb|ABQ17808.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1] gi|288946802|gb|ADC74499.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT] Length = 476 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 23/299 (7%) Query: 7 ESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V +++ IL+AVSGG DS+ +L +H + + F ++H LR Sbjct: 9 ERVSKYIKKQGLVSAGDEILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLR 65 Query: 64 -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E + + YV+++ S L + V ++ L AARE RYA + A Sbjct: 66 AEESDRDAAYVTELASALGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFG 125 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176 + + HT DD +ETV + R +G+ GL + + + L + RP L R + Sbjct: 126 SAAVAVGHTLDDNIETVMLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAE 185 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234 + + + + +D +N R R+R V L L F++ LR Sbjct: 186 TQVYCREAGLLPRQDITNLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGE 241 Query: 235 AMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMER 289 M + +T M++ + I Q D+L I+ + L L+ + + L G + +E Sbjct: 242 EMALLDEVTSQMKAELVIRQDDVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEA 300 >gi|294101776|ref|YP_003553634.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM 12261] gi|293616756|gb|ADE56910.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM 12261] Length = 470 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 109/312 (34%), Gaps = 32/312 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81 +VAVSGGSDS+ LL + ++H +RE ++ ++ +V + Sbjct: 41 VVAVSGGSDSVALLWFFVQFWPGK------VIVAHLEHGIRERSSIEDAAFVKKLAEAWG 94 Query: 82 IAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + L AR RY + A + AT++ HT DD ET+ Sbjct: 95 CEFEIEHVVVPRLLRKGESLEEGARRVRYDFFEQIAASEGATVVALGHTADDIAETLLFN 154 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G+ + ++ RP RED+R L R I W EDP+N D Sbjct: 155 LCRGSGPFGL-------VGIPEVRGQFIRPLSGWWREDLRRLLQARGICWREDPTNLDTT 207 Query: 199 FERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + R R+R + + + ++ Q+ R + +L+ S+ Sbjct: 208 YVRNRIRHEIIPLLERTINSSTRQHFVDFAQDMQEFRRREEKQGELLVQWGKENVPFSMY 267 Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRV 307 + + + + +R G +SL + ++ LK+ R Sbjct: 268 GTTLSFVRSLSEQEQAWFIRA----IGRNLSLKTLTRNRLTSLIATLKTSGRWLFQWENK 323 Query: 308 VIDRRANFLWIT 319 + + Sbjct: 324 AFICCGSGFMVW 335 >gi|160947239|ref|ZP_02094406.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270] gi|158446373|gb|EDP23368.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270] Length = 457 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 22/310 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+AVSGG DSM +L + + K+ +H LR+ A + ++V C + Sbjct: 19 VLLAVSGGKDSMIMLDLFNYFKYEL---KLNLVVCHFNHSLRDDADRDEKFVKTQCEKYG 75 Query: 82 IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + ++ + AR RY E + N I TAH +D ETV M Sbjct: 76 LKFYSKKEDVLLYSNENKLSTEEGARFLRYKFFDEVKRIENLEYIATAHNKNDLAETVIM 135 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + + RP L R++I ++ + NI + ED +N ++ Sbjct: 136 RILRGTGINGL-------IGIQSERGDLIRPILNFSRDEIEKYIEENNIPFVEDKTNFEE 188 Query: 198 RFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 + R ++R L A+ D +A + I Sbjct: 189 LYLRNKIRLNLFPILKNEYNPRILDAISRLSNIAFDYSTISREYIASKEGLLWEFNKEKI 248 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + + + + + R Y+ +E + + S + I VV Sbjct: 249 LVYIEKLKLQSRSFRNIMYREFFEFISKDPDGINYKIIEEIDNLIFSKTGKYIEIKNVVF 308 Query: 310 DRRANFLWIT 319 + L I Sbjct: 309 KIEYDKLLIY 318 >gi|212694903|ref|ZP_03303031.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855] gi|237727139|ref|ZP_04557620.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D4] gi|265750423|ref|ZP_06086486.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|212662463|gb|EEB23037.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855] gi|229433995|gb|EEO44072.1| tRNA(Ile)-lysidine synthase [Bacteroides dorei 5_1_36/D4] gi|263237319|gb|EEZ22769.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 434 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 122/336 (36%), Gaps = 42/336 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF I+ + +LVA+SGG+DS ++L A + Sbjct: 1 MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V+++C L +A V + S+ + AARE RY + K Sbjct: 54 HLRGEESDRDERFVNELCKGLGVALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AH DD +ET + R G+ + N I RP L R+ Sbjct: 114 ERGGAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 DI +L + D +N D + R ++R R + ++ ++ D+ + Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226 Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 N + + + +I + ++ + + LLF +L G+ S+ Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273 Query: 288 ER--VMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + V L + + R L I R Sbjct: 274 QAGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 309 >gi|91788722|ref|YP_549674.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666] gi|91697947|gb|ABE44776.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666] Length = 326 Score = 195 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 16/290 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + S VA+SGG+DS LL+ + A+ + H L+ A D R Sbjct: 13 ALASFSPGLPFAVALSGGADSTALLVGCAEKWPG------QVRAVHIHHGLQAAADDFER 66 Query: 72 YVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL----IMTAH 126 + +C++L + +V + P AAR+ARYA A+ A I A Sbjct: 67 HCQALCAQLNVPLAVKRVQARHAPGESPEDAARKARYAAFGAVAREEWAQHAIKDIAIAQ 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ + R G+ + RP L +R++L++R + Sbjct: 127 HADDQVETMLLALSRGAGLPGLAAM---PARWERDGIVYHRPLLAVPGALVRAWLVERGL 183 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 W EDP+NTD+RF R R+R + A + F A A+L+ + Sbjct: 184 PWVEDPTNTDERFTRNRIRARLLPALADAFPQFRETFARSARHAAQAQALLVE--VAQQD 241 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + + I + V Q + P +++++ + + Sbjct: 242 LATVGLPPAITALQGLSQPRQANVLRHWLQLQQATPSAAQLDQLLTQVAA 291 >gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces japonicus yFS275] gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces japonicus yFS275] Length = 462 Score = 195 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 46/392 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + S+R F+ L VAVSGG DSM L+ L + + K + A V+H LR+ Sbjct: 9 VNSLRSFIPYLRNGTA-GVAVSGGVDSMCLVHLLRETMLQYLWPK-RIHAFIVEHGLRKE 66 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLI 122 + ++ + I +++ + Q+ + AR RY +++ + Sbjct: 67 SAEDAVITRRRLLDMGIPSTILPLNHKWDLSKQSKIETIARVLRYRTLAKACLRHKIYGL 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NLWISRPFLRCRR 174 TAH +DQ ET+ MR + GL G+ + + RPFL + Sbjct: 127 FTAHHLNDQYETIVMRLLQRKPGTWGGLCGIRKVAPLPESEDIYGADQILLLRPFLSYPK 186 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF-VRDIDLHALYLKMKKFQDLRVKVNN 232 +++ + WCED SN D + R +R V + + + FQ+L Sbjct: 187 T-----CIKKKVQWCEDKSNKDIQLTVRNAIRAVGVDTLVSTEIASISQTFQELEDHSQK 241 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN---------IDSTLLFYLLRVSAAICGGQISLPG 283 +V L+ + ++ ++I + I I + L YL+ + + Sbjct: 242 SVHSLLKQCSCLYFKAIHSFQMQIPCIIMDTSSDFIKTEFLMYLIDIITPKTKKK----- 296 Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRAN------FLWITRAV-----RNLPTLILYP 332 RS+E + L + + ++ G + L+ITR T +L Sbjct: 297 RRSIEGISKRLWNSTKP-LTAGGCSFTLTKDDNCSSYILFITREQFSKRDAQKATFVLKN 355 Query: 333 EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 T +WD R+ Q DS + + D+ Sbjct: 356 GSTILWDNRFWVQVKYDSAKSFTIRPLKSGDI 387 >gi|325698021|gb|EGD39902.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160] Length = 425 Score = 195 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +L+AVSGG DSM LL L + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLLIDSQKEL---DIELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ + AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFEKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLFTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + + +D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPNLEKENPQIKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277 >gi|262374859|ref|ZP_06068093.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145] gi|262309872|gb|EEY91001.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145] Length = 458 Score = 195 bits (497), Expect = 9e-48, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 118/316 (37%), Gaps = 26/316 (8%) Query: 12 FVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 F++ L L+ SGG DS + + K AI VDH L+ + Sbjct: 20 FLKQLQDFPAETKFLIGCSGGVDS------MLLLHLMFFLCSEKIRAIYVDHQLQSISSA 73 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +V C +L I + + L AR +RY +H + +++ AH Sbjct: 74 WGTFVQQQCRQLNIPCIIQPVNVA--SGNLEQQARNSRYQAYLQHLQA--DEILVLAHHQ 129 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DQ ET+ +R G+ D NL I RP L RE I + N+ Sbjct: 130 QDQAETLMLRLLSGAGIDGLAAMKQIDIRE---NLTIWRPLLNISREQICQWASDLNVQN 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 EDP+N D ++R R+ + + L Y KM+ ++ ++ + L + S Sbjct: 187 IEDPTNADTYYDRAWARQTLWPV-LSERYPKMQAALVRTSELMQDAQDILQEVLQQDLAS 245 Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGC 301 +Q L + + LL SA + G + P +ER+ +++ K + Sbjct: 246 CGTETQLDLGKFLQLSKSRQRQLL--SAWMKGKEQYRPSLAMVERLQREVIYAKQDAQAA 303 Query: 302 VSIGRVVIDRRANFLW 317 + R L+ Sbjct: 304 LYWQGFYYVRYQQQLY 319 >gi|168334111|ref|ZP_02692324.1| tRNA(Ile)-lysidine synthetase [Epulopiscium sp. 'N.t. morphotype B'] Length = 450 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 101/243 (41%), Gaps = 18/243 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VAVSGG+DSM LL L+ +++F I V+H +R A+ ++ +V + Sbjct: 26 IVVAVSGGADSMMLLDYLYR---NKNFLYISIRIAHVNHKMRVDAEKDMEFVKNYAKERE 82 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V+ +K + AA R+ RY T I TAHT +DQ ETV M Sbjct: 83 IICDVLECDIEALAAKTKMSSEAAGRKVRYEFFESL----PHTKIATAHTANDQAETVLM 138 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R KG LSG+ I RP L RE++ + I + D +N + Sbjct: 139 RFLRGSDVKG--LSGINAKRE-----NIIRPILCITREEVEFYCNHHGIEYKTDHTNFLE 191 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R ++R + + + K+ + Y SII S+D Sbjct: 192 IYTRNKIRLSLIPYITKNINANIMHTLIEHSKLYREEEEFLSAYTKKIYDSIILKSEDSY 251 Query: 258 NID 260 I+ Sbjct: 252 EIN 254 >gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic] gi|259533756|sp|C4K162|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic] Length = 533 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 18/237 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGGSDS+ LL L ++ ++++ I+ ISVDH LRE +K E Y+ ++ + L Sbjct: 24 IAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNSLNRK 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +S+ + + L ARE RY L++ ++ +++TAH DD +E +R +R+ Sbjct: 81 HYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRLERNS 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV- 202 G+ S + + N+ I RP + ++ +L+ NI W ED SN+ D++ R Sbjct: 141 GIFGLSSSNIN----WYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKYRRNV 196 Query: 203 ----------RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 +R F + + ++ V + P LTV R + Sbjct: 197 IRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTSVGEEALLRGPVKLTVSSRGL 253 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 21/211 (9%) Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 +L + AV + + + + S + + ++ I GQ Sbjct: 332 PELISAIAEAVKIFEYGFAFLDLVKFDKFS-------NEVKVQIINFLLIIISGQSRAAR 384 Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY 342 + S+E ++ + ++ +I R N L I R + LP + +++ +WD R+ Sbjct: 385 FYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKLPESKILLDKSVIWDNRF 444 Query: 343 QFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK-- 399 ++ ++ I + L ++ K LL P + + K Sbjct: 445 CITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNHNAVLLTLPIIKILEKVI 502 Query: 400 -------FDLPVAYAFSISFGKVFIPRLPFF 423 +D + + F +SF F+ R F Sbjct: 503 AIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 532 >gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10] gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10] Length = 450 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 20/361 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +++VR + L + +A SGG DS+ LL+ ++VDH Sbjct: 1 MVARAVQTVRSALGRLAGEGPLGIACSGGGDSLALLVIASDWARANGR---SLQVLTVDH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR+++ DE +V+ + RL + ++W +++P GL A AR+AR+ L++ + + T Sbjct: 58 GLRKSSADEANHVAAMADRLGWPCTCLTWDDARPGAGLQARARDARHRLLARACRDLGLT 117 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDI 177 + AHT DDQ ETV++R + + + +L + RP L R ++ Sbjct: 118 ELALAHTRDDQSETVWLRLAAGGSWRSAAVMSDRAPSPVWPEGRDLDLLRPCLDVTRAEL 177 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----KKFQDLRVKVNN 232 R L I W +DPSN DDR+ RVR R + + + + Sbjct: 178 RRVLSDAGIDWVDDPSNEDDRYARVRARGDLGLLSEAGFQPDRFAELGALLRPVHAAERR 237 Query: 233 AVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 A L VH ++I + I + LL GQ P + + Sbjct: 238 AAWHCGQAALVVHAWGGVSIDRAAWSRIVPAVRLTLLDALVMAVSGQSVSPSRGRLVPLD 297 Query: 292 LFLKSGKRGC--------VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343 + + + V + R + + + V+DGR++ Sbjct: 298 AAILASTSVTGCGVQVLAGTAVTVWLIRDRGAVLGRVDHDGIDPWTDQSDVCRVFDGRFE 357 Query: 344 F 344 Sbjct: 358 I 358 >gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110] gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110] Length = 325 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 123/317 (38%), Gaps = 31/317 (9%) Query: 19 PAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 PAH+ V SGG+DS LL A S + A V H L+ A D R+ + V Sbjct: 14 PAHLPLAVGFSGGADSTALLAACASAWPG------QVLAFHVHHGLQAAADDFERHCAAV 67 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQ 131 C RL + +V Q AAR ARY + A+ A I+ H DDQ Sbjct: 68 CERLGVPLAVHRVDARHAQGDSPEDAARRARYDAFAAMARMDTALGAIESIVLGHHADDQ 127 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ + R G+ + L I RP L DIR++L ++ W ED Sbjct: 128 VETLLLALSRGAGLPGLAAMPAH---VRRNGLDIYRPLLAVPGADIRAWLKSVDLPWIED 184 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 P+N D+R+ R R+R + L AL +F+ + A + + ++ Sbjct: 185 PTNEDERYTRNRIRAVL----LPALARTFPQFRATFARSIGHAAQAQELLGELAAQDLVV 240 Query: 252 I-----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGCV 302 + + + +LR G P +++++ +++ G R + Sbjct: 241 VGNPPRIAALQALSRARQANVLRHWLMQAHGCA--PSAAQLDQLLDQVRACTTRGHRIHL 298 Query: 303 SIGRVVIDRRANFLWIT 319 + RR + L Sbjct: 299 KVANGFAQRRGDLLHWY 315 >gi|295692143|ref|YP_003600753.1| cell cycle protein [Lactobacillus crispatus ST1] gi|295030249|emb|CBL49728.1| Cell cycle protein [Lactobacillus crispatus ST1] Length = 417 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA S G DSM LL L ++ SF A DH LR + EV + + Sbjct: 14 LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C++ +I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + Sbjct: 71 CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M ++ + + RP L ++++ + +R I + D +NT Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251 +D R R+R V + + L +F + ++ + + TV Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247 Query: 252 ISQDILN 258 I D LN Sbjct: 248 IKTDNLN 254 >gi|227878371|ref|ZP_03996326.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus JV-V01] gi|256844414|ref|ZP_05549900.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256849198|ref|ZP_05554631.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-1A-US] gi|262047214|ref|ZP_06020172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-3A-US] gi|227862050|gb|EEJ69614.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus JV-V01] gi|256613492|gb|EEU18695.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN] gi|256713974|gb|EEU28962.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-1A-US] gi|260572459|gb|EEX29021.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus crispatus MV-3A-US] Length = 417 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA S G DSM LL L ++ SF A DH LR + EV + + Sbjct: 14 LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C++ +I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + Sbjct: 71 CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M ++ + + RP L ++++ + +R I + D +NT Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251 +D R R+R V + + L +F + ++ + + TV Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247 Query: 252 ISQDILN 258 I D LN Sbjct: 248 IKTDNLN 254 >gi|24378543|ref|NP_720498.1| putative cell-cycle protein [Streptococcus mutans UA159] gi|61217358|sp|Q8DWM9|TILS_STRMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24376391|gb|AAN57804.1|AE014853_11 putative cell-cycle protein [Streptococcus mutans UA159] Length = 423 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 24/266 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L ++ +FF +IL+AVSGG DSM LL LH +I+ + V+H Sbjct: 7 LKYVQEKKFFETHY----NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQ 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A +E Y+ + I +K AR+ RY K T + Sbjct: 60 RPQADEEEIYLKNWARDNHIPFYTAVFKGIFS----EKKARDFRYTFFKNIMKEHGYTAL 115 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH +DQ ETV++R R + + +G+ + + N + RPFL+ ++++ Sbjct: 116 VTAHHANDQAETVFLRLLRGSRLRYL--TGIKEIQEFG-NGQLIRPFLKFHKKELP---- 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 NI +D SN D + R R+R L L + K ++++ +L + Sbjct: 169 --NIFHFDDDSNQGDSYLRNRIRNH----YLPILTQENPKLSQHLIQMSEETNLLFKAFS 222 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL 268 + + I Q + + ++LL Sbjct: 223 DLTSQLDIQDCQIFRSQSEAIQYFLL 248 >gi|73749106|ref|YP_308345.1| PP-loop family protein [Dehalococcoides sp. CBDB1] gi|123620029|sp|Q3ZYX5|TILS_DEHSC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|73660822|emb|CAI83429.1| PP-loop family protein [Dehalococcoides sp. CBDB1] Length = 471 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 23/299 (7%) Query: 7 ESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V +++ IL+AVSGG DS+ +L +H + + F ++H LR Sbjct: 4 ERVSKYIKKQGLVSAGDEILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLR 60 Query: 64 -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E + + YV+++ S L + V ++ L AARE RYA + A Sbjct: 61 AEESDRDAAYVTELASALGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFG 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176 + + HT DD +ETV + R +G+ GL + + + L + RP L R + Sbjct: 121 SAAVAVGHTLDDNIETVMLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAE 180 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234 + + + + +D +N R R+R V L L F++ LR Sbjct: 181 TQVYCREAGLLPRQDITNLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGE 236 Query: 235 AMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMER 289 M + +T M++ + I Q D+L I+ + L L+ + + L G + +E Sbjct: 237 EMALLDEVTSQMKAELVIRQDDVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEA 295 >gi|320547724|ref|ZP_08042009.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812] gi|320447799|gb|EFW88557.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812] Length = 421 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 24/267 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I+ +F + +L+AVSGG DSM LL L+ + I+ V+H Sbjct: 5 LVKEIQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIYQKNLG---IEIGIAHVNHK 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E Y+ D + +I V + + AR+ RY + N T Sbjct: 58 QRVESDIEENYLRDWANEYQIPIYVSYFLGNFS----EKTARDFRYHFFKQIMNEQNYTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ET++MR R + LSG+ + N + RPFL ++D+ Sbjct: 114 LVTAHHADDQAETIFMRLLRGSRLR--HLSGIQAVSPFA-NGELIRPFLAYFKKDLPD-- 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN F R R+R I L + KF+ ++ L + Sbjct: 169 ----IFHFEDDSNQSLEFLRNRIRNRYIPI----LEEENPKFKQGLRQLGEESEQLFQAF 220 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLL 268 + + L + LL Sbjct: 221 QDLTQNIDVTNCSQFLAQSQAVQTILL 247 >gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330] Length = 425 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 117/303 (38%), Gaps = 26/303 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLVDYQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R ++ E + + + +L + S+ S AR+ RY + + + T Sbjct: 59 QRPESEQEEKALVKIAEQLGVKIFTSSFSGSF----SENVARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKTNYQ 279 Query: 302 VSI 304 ++ Sbjct: 280 HTL 282 >gi|260592846|ref|ZP_05858304.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319] gi|260535216|gb|EEX17833.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319] Length = 461 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 73/373 (19%), Positives = 132/373 (35%), Gaps = 48/373 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ I+ + L AH LVA+SGG+DS+ LL+ + + + A+ + Sbjct: 1 MLNKIKRYIASEQLLKPKAHCLVALSGGADSVALLLTMRQL-------GYETDAVHCNFH 53 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR + + + Y +C +L I + + + + AARE RY + + Sbjct: 54 LRGDESNRDEEYCQSLCKQLNIPLHIAHFDTLTYAEAHKVSIEMAARELRYRYFFQLKEA 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A I H +D +ET+ + R G GLSGM + I RP L R++ Sbjct: 114 LGADAICVGHHQEDSVETILINLVR-----GTGLSGMLGIRPKKGD--IVRPLLCVSRKE 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVK 229 I +L Q+ IS+ D +N D R ++R + A+ + D+ Sbjct: 167 IEEYLHQQAISYVTDSTNLVDDVVRNKLRLNILPQLAAINPSVNDAILTTARHLMDVDKI 226 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY----- 284 V ++ + + + + + + F L Q S P Y Sbjct: 227 VEASLLQALQSAVKPLRKGQEISFKRPFKPEENVPFTLDLQVV----RQFSAPSYLLFYV 282 Query: 285 --------RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 + V + + L + ++P ++ PE Sbjct: 283 LKPLGFTTSQITEVAELADEKTGQLWESAAYELTHDRHSLLVLPLEHDVPRPLVIPET-- 340 Query: 337 VWDGRYQFQNLSD 349 GRY + + Sbjct: 341 ---GRYIYDEHTS 350 >gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein) [NC10 bacterium 'Dutch sediment'] Length = 468 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 124/322 (38%), Gaps = 26/322 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R L +++AVSGG DSM LH +L R+ ++H LR + + R+ Sbjct: 17 RMLAAGEAVVLAVSGGVDSMA---MLHLLLHLRTRYHGPLHVAHLNHDLRGAESAETARF 73 Query: 73 VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V C +I ++ + L AAAR+ RY + A A I H Sbjct: 74 VQRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQGAGRIAVGHHR 133 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV M R +G+G + + I RP + C RE+I ++ + I + Sbjct: 134 DDQAETVLMNLLRGSGVRGIG-------GIPPVRGRIIRPLIDCSREEIERYVRKERIPY 186 Query: 189 CEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 ED SN + R R+R + +H+L + +N+ + Sbjct: 187 VEDSSNHVLAYSRNRIRLELLPELAKRYNPRVIHSLANAATILEAEDTLLNDMADRELRA 246 Query: 241 YLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297 L R +S + + S L + ++R SA ++ + +L K Sbjct: 247 ILVSRSREEFVLSIPPMTTLLSALRWRIIRRSAEELRAGHPGLTFQHTLAIDRLLMTKGA 306 Query: 298 KRGCVSIGRVVIDRRANFLWIT 319 K + G + R N L ++ Sbjct: 307 KGAIHAPGGLRARRVGNSLVLS 328 >gi|262281632|ref|ZP_06059401.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA] gi|262262086|gb|EEY80783.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA] Length = 425 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 24/268 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FL + +F+ +L+A+SGG DSM LL L+ + I+ ++H Sbjct: 5 QFLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKEL---DIELILAHINH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R A E + + ++ +L + S+ + AR+ RY + + + T Sbjct: 58 KQRIEADQEEKQLKEIAQKLGVKILTSSFSGVFSEKS----ARDFRYNFFKKVMQEEDCT 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ ET++MR R + LSGM D + + RP L + D + Sbjct: 114 ALVTAHHADDQAETIFMRILRGSRLRY--LSGMKDRQPFG-GGELIRPLLEFSKTDFPT- 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + ED SN ++ + R RVR L + + + + + +A L Sbjct: 170 -----VFHFEDASNFENTYFRNRVRNQ----YFPLLETENPRIKQAIIGLGLEIAQLQKA 220 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + Q + +LL Sbjct: 221 LSGLTKDLNLTDLQTFRKQKREVQVFLL 248 >gi|290579537|ref|YP_003483929.1| putative cell-cycle protein [Streptococcus mutans NN2025] gi|254996436|dbj|BAH87037.1| putative cell-cycle protein [Streptococcus mutans NN2025] Length = 423 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 24/266 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L ++ +FF +IL+AVSGG DSM LL LH +I+ + V+H Sbjct: 7 LKYVQEKKFFETHY----NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQ 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A +E Y+ + I +K AR+ RY K T + Sbjct: 60 RPQADEEEIYLKNWARDNHIPFYTAVFKGIFS----EKKARDFRYTFFKNIMKEHGYTAL 115 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH +DQ ETV++R R + + +G+ + + N + RPFL+ ++++ Sbjct: 116 VTAHHANDQAETVFLRLLRGSRLRYL--TGIKEIQEFG-NGQLIRPFLKFHKKELP---- 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 NI +D SN + + R R+R L L + K ++++ +L + Sbjct: 169 --NIFHFDDDSNQGNSYLRNRIRNH----YLPILTQENPKLSQHLIQMSEETNLLFKAFS 222 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL 268 + + I Q + + ++LL Sbjct: 223 DLTSQLDIQDCQIFRSQSEAIQYFLL 248 >gi|188996043|ref|YP_001930294.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931110|gb|ACD65740.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 457 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 22/311 (7%) Query: 4 SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++VR F +L+ IL+A SGG DS+ L L + KI+ ++H L Sbjct: 7 KFLKAVRKF--NLIENQDKILIAFSGGPDSLVLTNLLLKFQKTLNIAKIQL--AHLNHTL 62 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118 R+ + + + S L + V K + + A R RY +E + N Sbjct: 63 RKESDQDQEFCEKFASSLGLKIHVKKADVKKVAREQKISVEEAGRLERYKFFNEILQKEN 122 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I T H D E++ + + G+ + N I RP +E+I Sbjct: 123 LNKIATGHHLSDLTESIVLWFIQGNKR------GLKGFRPKENN--IIRPLYLITKEEIE 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235 + + + + D SN ++ R +VR V I L M L + Sbjct: 175 EYCQKNGLEYLIDQSNFSRKYLRNQVRLDVIPILKKINPDLENSMLNLSQLSYFDEFYLD 234 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L +Y + + + +N L Y L + I + P Y+ + +M L Sbjct: 235 KLTEEYYSQLDNKNL-LDLSFINKLPNALKYRLLIK-WIYENTDTYPSYKQILNLMEILD 292 Query: 296 SGKRGCVSIGR 306 + + I R Sbjct: 293 KQGQKEIKISR 303 >gi|223936702|ref|ZP_03628612.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514] gi|223894553|gb|EEF61004.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514] Length = 457 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 130/350 (37%), Gaps = 24/350 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +E V + ILV VSGG DSM LL L + S + + ++H Sbjct: 8 LMERVEQVIEARQLFGRGERILVGVSGGLDSMVLLEVLSELASKHDW---TLAVAHLNHS 64 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKT 116 LR ++ + R V RL V V K L AAR R+ ++ A+ Sbjct: 65 LRGRSSDADERLVRRTAERLGCQCVVERAEVRKFGRKAGLSLEMAARRLRHEFLARSARK 124 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++ AH DDQ+E +R R + +G+ D L + RP L R+ + Sbjct: 125 LGIKVVALAHHADDQVELFLLRLLRGASSEGLAGMDWKVASPVDKGLGLVRPLLEVRKSE 184 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + F Q + + +D +N R RVR + + L+ + K ++++ A Sbjct: 185 LEGFAQQEGVKFRKDATNESQEILRNRVRHELVPL-LNGYQPALGKVIMRQMEILGAEGD 243 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 I + V + N+ + ++ G + +E++ L Sbjct: 244 FIDE---VAGNWLRKKDGLFGNLAVAVQRRVIYRQLLELGVAG---DFELVEKLRLRAS- 296 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNL------PTLILYPEETTVWDG 340 R +V+ R + TR + + + L E +WDG Sbjct: 297 --RPVTVSKDMVVTRDEAGVVKTRQIERMGFNSGQIEINLSRENEIIWDG 344 >gi|300362403|ref|ZP_07058579.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus gasseri JV-V03] gi|300353394|gb|EFJ69266.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Lactobacillus gasseri JV-V03] Length = 431 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 17/317 (5%) Query: 7 ESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E FF ++ + L+A SGG DS+ L L + L D S + +DHCLR+ Sbjct: 3 EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPDPSE---QLIVAHLDHCLRK 59 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 + E + + + ++ SW + PQTG+ A ARE RYA ++ K ++ Sbjct: 60 DSYLESELLQRLATAFKVKLIEKSWPLALHPQTGIEARAREFRYAFLANTGKKYQVDYLL 119 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD +E + ++ R M + ++ + RP ++ ++ + + Q Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQVVGNF---NSMKLLRPLIKYSKDQLLEYDKQ 176 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 ++ + ED +N +D R R+R V + L + + + + + A+L + Sbjct: 177 NSLDYIEDETNFEDDTLRNRLRHHVVPL----LKKETNHLVENAYRFSESAALLSDCQSS 232 Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-MLFLKSGKRGC 301 I+ +S L + L L + A L + +RV ++ K Sbjct: 233 FFESLILPVSFGKALQGRKSDLIDLNKNQLAAF--FDYLIYKKWHQRVHFDEIRWSKNAT 290 Query: 302 VSIGRVVIDRRANFLWI 318 + + ++ ++ Sbjct: 291 FNKENFQLIFYQDYYYL 307 >gi|327490349|gb|EGF22136.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1058] Length = 425 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 26/303 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ AAR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGDFS----ENAARQFRYDFFGKVMQEEHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHAADQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPY-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQIAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENVQAFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279 Query: 302 VSI 304 ++ Sbjct: 280 HTL 282 >gi|329906074|ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547349|gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 467 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 122/320 (38%), Gaps = 15/320 (4%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 R + + +A SGG DS LL H I+ A V H L A D Sbjct: 23 RVVFSAPAAGDALAIAYSGGLDSSALLYLAHRHAQK---NGIRLFAFHVHHGLSADADDW 79 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +++ + C+RL + + + + +G+ AAAR +RYA + + L++TAH Sbjct: 80 LQHCAGECARLGVTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQ 139 Query: 129 DDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ +L D L ++RP L R + + + + Sbjct: 140 DDQAETVLLQLLRGSGVAGLSGMDTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEG 199 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 I+ +D SN D R+ R +R V ++ + + L + L Sbjct: 200 ITHVDDASNLDTRYARNALRHEVMPALAKFFPGFQHRLARTASHAQSAQRLLIELATQDL 259 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 + + + LLR G + +P + + + K + Sbjct: 260 ALCAAGDALDISRLRLLSPDRADNLLRYWFGSRG--VRMPSTSWLHEMRTQLFEAKPDAQ 317 Query: 300 GCVSIGRVVIDRRANFLWIT 319 CV+ I R + ++IT Sbjct: 318 LCVTHADCHIRRHRDHVFIT 337 >gi|157150417|ref|YP_001451360.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|189035973|sp|A8B000|TILS_STRGC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157075211|gb|ABV09894.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 425 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 24/268 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FL + +F+ +L+A+SGG DSM LL L+ + I+ ++H Sbjct: 5 QFLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKEL---DIELILAHINH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R A E + + ++ +L + S+ + AR+ RY + + + T Sbjct: 58 KQRIEADQEEKQLKEIAQKLGVKILTSSFSGVFSEKS----ARDFRYNFFKKVMQEEDCT 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ ET++MR R + LSGM D + + RP L + D + Sbjct: 114 ALVTAHHADDQAETIFMRILRGSRLRY--LSGMKDRQPFG-GGELIRPLLEFSKTDFPT- 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + ED SN ++ + R RVR L + + + + + +A L Sbjct: 170 -----VFHFEDASNFENTYFRNRVRNH----YFPLLETENPRIKQAIINLGTEIAQLQKA 220 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLL 268 + Q + +LL Sbjct: 221 LSDLTKDLNQTDLQTFRKQKREVQVFLL 248 >gi|148244290|ref|YP_001218984.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA] gi|146326117|dbj|BAF61260.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA] Length = 390 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 124/316 (39%), Gaps = 32/316 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + +I++ +SGG DS+ LL L++ K I +H L + ++ Sbjct: 10 FLEDKNIVLGLSGGIDSIVLLHYLNT------HYPNKIRVIHCNHHLSQFCNKWDKFCKT 63 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L I + ++ + + AR+ RY +S K ++ TAH +DQ ET+ Sbjct: 64 TCLNLNIVYLSINLSF-DNTSNIEENARKKRYHSLSNLLKEN--EVLCTAHHKNDQAETL 120 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R GL+ M + RPFL + + + ++W ED SN Sbjct: 121 LLQLFRGSGS--AGLAAMPKEKPLGKGIH-YRPFLTINKSQVSDYANNHKLNWIEDDSNK 177 Query: 196 DDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAML-IPKYLTVHMRS 248 + F R +R + +L + + Q +K+ +A + I Y ++ + Sbjct: 178 NTYFRRNFLRLEILPKLSEVYKNLTETLARSAQHQSETLKLTRELADIDIKTYYIINHTN 237 Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCV 302 I ISQ I I + + +L ++ P + M ++ +L K + V Sbjct: 238 RINISQLIKLGIHRIKNIIRHHLNLLNFLT-------PSDKIMHQIIKLLHAKKDTKPLV 290 Query: 303 SIGRVVIDRRANFLWI 318 + + R N L+ Sbjct: 291 CWNKYEVRRYKNELYF 306 >gi|171778208|ref|ZP_02919437.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283032|gb|EDT48456.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 421 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 24/243 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I+ +F + +L+AVSGG DSM LL L+ R + + V+H Sbjct: 5 LVKEIQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RKKLGVDIAIAHVNHK 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E Y+ + +I V + + AAR+ RY E + T Sbjct: 58 QRLESDTEEAYLREWAKEHQIPIYVAYFSGAFS----ETAARDFRYKFFKELMAEHSYTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ET++MR R + LSGM + + + RPFL ++++ Sbjct: 114 LVTAHHADDQAETIFMRLLRGSRLR--HLSGMQTVNAFG-DGELIRPFLAYSKKELPD-- 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED +N F R R+R L + KF+ + N L + Sbjct: 169 ----IFHFEDDTNRSLDFLRNRIRNH----YFPILEEENPKFKQALRYLGNESQQLFQAF 220 Query: 242 LTV 244 + Sbjct: 221 QDL 223 >gi|281490518|ref|YP_003352498.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis KF147] gi|281374336|gb|ADA63869.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis KF147] Length = 423 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 20/272 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ +F + + IL+A+SGG DSM L L+ + + I+ ++H Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LRE +K E + ++ ++L++ V + + AR+ RY + N + Sbjct: 61 LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + + RP L+ +E++ + Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFA-GGQLIRPLLKFTKEELDA-- 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED +N + R R+R + + DL ++ A+A++ K Sbjct: 172 ----QIYYEDSTNQGLDYFRNRIRNQLIPELTKENPQFSQSISDLSSEIKKALAVINQKI 227 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + + S+ ++ L ++L+ A Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259 >gi|319794157|ref|YP_004155797.1| tRNA(ile)-lysidine synthetase [Variovorax paradoxus EPS] gi|315596620|gb|ADU37686.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus EPS] Length = 323 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 118/315 (37%), Gaps = 29/315 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V SGG+DS LL A S + A V H L+ A D R+ +VC+RL Sbjct: 18 PLAVGFSGGADSNALLAACASRWPG------QVVAFHVHHGLQAAADDFERHCGEVCARL 71 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN----ATLIMTAHTFDDQLETV 135 + V P AR ARY A+ + I H DDQ+ET+ Sbjct: 72 GVPLVVHRVDARHAPGDSPEDTARRARYEAFGVMARMDSTRPFIQSIALGHHADDQVETL 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ L I RP L DIR++L R++ W EDPSN Sbjct: 132 LLALSRGAGLPGLAAMPAHAE---RNGLNIYRPLLTVPAADIRAWLAARDLPWIEDPSNG 188 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R+ R R+R + L AL +F+ + A L + + + ++ Sbjct: 189 DARYTRNRIRAVL----LPALEQAFPQFRATFARSIGHAAQAQQLLLELAAQDLKSVGDP 244 Query: 256 IL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGCVSIGR 306 L +LR G P +++++ +++ G R + + Sbjct: 245 PLIKALQAFSRARQANVLRHWLMQSHGCA--PSAAQLDQLLDQVRACTTRGHRIHLKVAG 302 Query: 307 VVIDRRANFLWITRA 321 +R+ + L A Sbjct: 303 GFAERKGDRLHWYNA 317 >gi|255038959|ref|YP_003089580.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053] gi|254951715|gb|ACT96415.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053] Length = 444 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 82/328 (25%), Positives = 125/328 (38%), Gaps = 30/328 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 L+AVSGG DS+ ++ H + + LR E + + +V + +R Sbjct: 22 LLAVSGGIDSVVMVHLFHE-------QGLPAGIAHCNFGLRGEESNADEAFVRALAARCN 74 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V V + AARE RY E ++ I TAH +D LET+ + Sbjct: 75 FPVFVSDPDVKTFSKSHSISTQMAARELRYEWFEEIRRSSGYGWIATAHHSNDSLETLLL 134 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL GMC + + RP + R ++R + + I+W ED SN D Sbjct: 135 NLAR-----GTGLPGMCGIAPVRDH--LIRPLILSNRAEVRRYAEENGITWREDRSNASD 187 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ++R +VR V + L L ++ + + A L+ +YL I+ S + Sbjct: 188 DYQRNKVRHHVVPV-LTDLNPSLETTFNASAERLRAANTLLDEYLGAWKSRIMRDSGGSM 246 Query: 258 NID------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 NI + Y L G L V L K GK+ ++IDR Sbjct: 247 NIPIDEILGKSEPIYRLWYILQDFG---FLYSQVRAIAVALHGKPGKQFHSPTHVLLIDR 303 Query: 312 RANFLWITRAVRNLPTLILYPEETTV-W 338 L N L++ ET V W Sbjct: 304 ALLILKAHGEQSNEGQLLIEDTETPVEW 331 >gi|309806956|ref|ZP_07700938.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b] gi|308166576|gb|EFO68773.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b] Length = 409 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 9/247 (3%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+S G DSM LL + ++ D + + VDHCLR + E ++ C + ++ Sbjct: 2 AISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYKLQL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 W P GL AAAR+ RY ++ + A + TAH DD E + ++ R Sbjct: 59 EETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGN 118 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 + M + + + N + RP L +E++ + +R +++ D +N ++ R R+ Sbjct: 119 VQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRL 176 Query: 205 RRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAISQDILNID 260 R FV D L +F + + +L K + I+ ++ L+ Sbjct: 177 RHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQVNAADLSDF 236 Query: 261 STLLFYL 267 + L Sbjct: 237 NCQQLSL 243 >gi|74316607|ref|YP_314347.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259] gi|74056102|gb|AAZ96542.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259] Length = 445 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 17/335 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 R + A +++A+SGG DS+ LL L S+ R + +A+ V H L A D Sbjct: 4 ALARHVFSGARLVLALSGGLDSVVLLHVLASL---RGRHRFALAAVHVHHGLSPHASDWA 60 Query: 71 RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +C+ + V G AAAR R+ + + ++A ++TAH D Sbjct: 61 DFCERLCAAHALDLQVERVHIAGDDPAGTEAAARRERHRVFA----RLDADFVLTAHHLD 116 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV ++ R KG+ RP L R IR+ + ++W Sbjct: 117 DQAETVLLQLLRGAGPKGLAAMPQLR-RPAGWRAAQLRPLLDVSRRAIRAHAQRHGLAWV 175 Query: 190 EDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED SN D R+ R +RR + + + L+ + + L + Sbjct: 176 EDESNLDLRYRRNALRRDIMPRLAAHFPGSAPTLARAAALQAEAAGLLDDLAALDAQGAV 235 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVS 303 R + + + LLR I G LP R ++ L L + R V+ Sbjct: 236 RGDRLDCAALAALSAPRARNLLRHF--IEGRGCPLPSARVLDEARLQLVDARHDARVRVN 293 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW 338 + + R ++ + + E ++W Sbjct: 294 LKAAELWRFRGHAYVVSPAPAPAPAVYWHGEQSLW 328 >gi|304385528|ref|ZP_07367872.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM 20284] gi|304328032|gb|EFL95254.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM 20284] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 10/257 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VAVS G DS L+ AL L+ + + + V+H LR + E ++ C++ Sbjct: 20 APVVVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEEFLRQWCAK 76 Query: 80 LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ W P TG+ AAAR RY ++ + +A ++TAH +Q E+ M+ Sbjct: 77 RRLTFVSTKWSRELHPDTGVEAAARRFRYDFFAKVMQRYHANTLLTAHNATEQAESFLMQ 136 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R L G + + + RPFL+ + + + + +++W ED +N D Sbjct: 137 VVRGGWL--SQLRGTPEERSFATG-RLVRPFLKISKPTLVALAQENHLTWFEDETNQQDD 193 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQD 255 + R RVR + ++ + ++ + + + + L + Sbjct: 194 YLRNRVRNQLLPALQAENPRVVEHIGQYQTEITEQDQLIKEISRQKLAQLRQGSQYQLPK 253 Query: 256 ILNIDSTLLFYLLRVSA 272 LL+ Sbjct: 254 FKAESRLWQKQLLKQLV 270 >gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1] gi|61216595|sp|Q7UNE1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1] Length = 397 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 53/259 (20%), Positives = 98/259 (37%), Gaps = 20/259 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGK-----------IKFSAISVDHCLR-ETAKDEV 70 LV SGG+DS+ L+ L + ++ S G +H LR E + + Sbjct: 40 LVGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADE 99 Query: 71 RYVSDVCSRLRIAHSVVSW-----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V +C +L++ + + R+ R AK + A Sbjct: 100 AFVRQICDQLQLPLVIHHVPPLNNSATSGPVSDERTLRQIRRDFFERAAKQHGCRYVAVA 159 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H+ DDQ ET+ R +GL+G+ + D ++ + RP L+ RR+ +R L + Sbjct: 160 HSADDQAETMLHHFIRGTGP--LGLAGIAEASELDTDIVVRRPLLQVRRDTLRDGLREIG 217 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 W ED SN + R +R V + ++ + + + ++ + Sbjct: 218 QPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA-GTLQHEMNEMVRRLAERW 276 Query: 246 MRSIIAISQDILNIDSTLL 264 + + S D I + L Sbjct: 277 LEAFTDFSGDRWTIHTERL 295 >gi|198276045|ref|ZP_03208576.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135] gi|198271674|gb|EDY95944.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135] Length = 426 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 117/340 (34%), Gaps = 28/340 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF+ + + +LVA+SGG+DS ++L A + Sbjct: 1 MFIKKVSQFIEEKHLFGFSDKVLVALSGGADS-------VALLRVLLRLGYACEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V + RL + V+ + + + AARE RY ++ + Sbjct: 54 HLRGEESVRDERFVRALAERLGVPLHVIHFDTNAYAASHNVSVEMAARELRYDWFTKLRQ 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A ++ AH DD +ET + R G+ + +N + RP L R Sbjct: 114 ECGAKVVAVAHHRDDSVETFLLNLVRGTGINGL-------QGIRPVNGDVVRPLLCVSRA 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I +L + D +N D F R ++R V + L D ++ Sbjct: 167 EILDYLSSLGQDYVTDSTNLQDEFVRNKLRLNVIPM----LETINPSVSDTIADTARRLS 222 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLF 293 + Y + + D ID L + + G+ + V Sbjct: 223 DVAQVYQEAIQAAKQRVMPDGETIDIPALCREPGAQNLLFE-LLYPLGFNAAQVNDVFRA 281 Query: 294 LK--SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331 L SG+ ++IDR + V P L L Sbjct: 282 LHGESGRMFYSREWVLLIDRNRLIRRPSGEVEPQPELCLE 321 >gi|170760449|ref|YP_001788867.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch Maree] gi|169407438|gb|ACA55849.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch Maree] Length = 468 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + + R ++R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQNIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|311748470|ref|ZP_07722255.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1] gi|126576986|gb|EAZ81234.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1] Length = 439 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 109/318 (34%), Gaps = 38/318 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 L L+A SGG DS+ L LH F V+ LRE + + +V Sbjct: 15 LDLDKKYLLACSGGLDSVCLGTLLHQ-------SGFSFEVAHVNFHLREKESDGDELFVK 67 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + V + AAR+ RY + K N I+ AH DD Sbjct: 68 NLAEQWNAPFHVHQADTYSFVEDHKVSTQMAARDIRYEWFEQIRKERNLAGILLAHHEDD 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 QLET+++ R +G L GM + + RP L R +I F ++W E Sbjct: 128 QLETIFLNLLRGTGIEG--LYGMAEKR-----GKLIRPLLPFSRAEILEFATAMELAWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 D SN ++R ++R + L L+ + +D + + Sbjct: 181 DSSNKSTDYKRNKLRIDILPKLLDFAEDSRANLFTSFDRLKDTGRAFTGLFDQWKSQAIK 240 Query: 244 VHMRSIIAISQDILNIDST--LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 D L++D L+++ LR + + G+ G Sbjct: 241 DEEGIQTLGYSDFLHLDGATSLIYFWLR---------SYGFNSTQAQEIYQSCLLGESGK 291 Query: 302 -VSIGRVVIDRRANFLWI 318 V++ + L + Sbjct: 292 LFESASFVLNNDRDQLIL 309 >gi|294664722|ref|ZP_06730052.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605500|gb|EFF48821.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 418 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 68/348 (19%), Positives = 124/348 (35%), Gaps = 17/348 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS LL L + R G A+ V H L A + C L++ Sbjct: 2 LLAYSGGMDSSVLLHLLAAASRYRHAG---LRALHVHHGLHADADAWAAHCQRTCDALQV 58 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V + ++ +GL A + I + AH DDQ ET +R+ R Sbjct: 59 PLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLRALRA 117 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G+ + + RP L R D+ ++ + W +DPSN D +R Sbjct: 118 SGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAHGLRWIDDPSNADPHHDRN 174 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDILNI 259 +R + + +A A+L+ + + + + A+ L Sbjct: 175 FLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPSVITASGALDLQALRA 234 Query: 260 DSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 L + LP + ++E+ + + + C + +V + R L+ Sbjct: 235 QPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVRRWRQCLF 294 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 + RA P+ + WDG Q + +++ + P Sbjct: 295 LHRAAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 337 >gi|327541838|gb|EGF28350.1| tRNA(Ile)-lysidine synthetase [Rhodopirellula baltica WH47] Length = 397 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 96/259 (37%), Gaps = 20/259 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-----------GKIKFSAISVDHCLR-ETAKDEV 70 LV SGG+DS+ L+ L + ++ S +H LR E + + Sbjct: 40 LVGCSGGADSVALIRLLAELWAEESNVLNPANETVTNPVAPLVVAHCNHGLRGEESTADE 99 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTA 125 +V +C +L++ + R+ R AK + A Sbjct: 100 AFVRQLCDQLQLPLVIHHVSPPNNSATPGPVSDERTLRQIRRDFFERAAKQHGCRYVAVA 159 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H+ DDQ ET+ R +GL+G+ + D ++ + RP L+ RR+ +R L + Sbjct: 160 HSADDQAETMLHHFIRGTGP--LGLAGIAEVSELDTDIVVRRPLLQVRRDTLRDGLREIG 217 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 W ED SN + R +R V + ++ + + + ++ + Sbjct: 218 QPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA-GALQHEMNAMVRRLAERW 276 Query: 246 MRSIIAISQDILNIDSTLL 264 + + S D I + L Sbjct: 277 LEAFTDFSCDRWTIHTERL 295 >gi|325695771|gb|EGD37670.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150] Length = 425 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 114/298 (38%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ ++F +LVAVSGG DSM LL L + + I+ + V+H Sbjct: 6 FLKKMQERKYFQDH----RKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + +L + S+ S AR+ RY + + + T Sbjct: 59 QRPESDQEEKALVKIAEQLGVKIFTSSFSGSF----SENVARQFRYDFFGKVMQEGHYTA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ ETV+MR R + LSGM + + RP L + D Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R + L L + +F+D + + Sbjct: 170 ----IDHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I Q + +LL+ G + E V+ L++ Sbjct: 222 SHLTRDLDIENIQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277 >gi|293380361|ref|ZP_06626432.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1] gi|290923044|gb|EFD99975.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1] Length = 417 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 10/234 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVA S G DSM LL L ++ SF A DH LR + EV + + Sbjct: 14 LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70 Query: 77 CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C++ +I W K+ +PQTG+ AAAREARY ++ A + ++TAH DD LE + Sbjct: 71 CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + M ++ + + RP L ++++ + +R I + D +NT Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +D R R+R V + + L +F + ++ + + TV Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEP 241 >gi|258647528|ref|ZP_05734997.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259] gi|260852303|gb|EEX72172.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259] Length = 480 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 39/347 (11%) Query: 4 SPIESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 ++++R L+ +LVAVSGG+DS+ LL LH + + Sbjct: 13 RVLKTLRRLPEGLLPVKDKRLLVAVSGGADSVALLRVLHQL-------GYACEVAHCNFH 65 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116 LR E + + +VSD+C L + + + + AAR+ RY + Sbjct: 66 LRGEASDRDAAFVSDLCRDLGVPFHLRDFATEAFARSQAVSVEMAARDLRYQWFDQLLAE 125 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 N + + AH +D +ET ++ R G+ + I RP L R + Sbjct: 126 RNLSAVAVAHHKEDNVETFFLHLARGSGLHGL-------VGMRYQRGKIIRPLLDVSRRE 178 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVK 229 I ++L + D +N D RF+R R+R + L M++ ++ Sbjct: 179 IEAWLSAIGQPFVTDETNADVRFKRNRLRNRILPELRQLNPAFDDTLLQTMRRLREADDY 238 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 +N + L + + I ++ D + LF L Q++ G+ + E Sbjct: 239 LNQVLDDLWADFTSALP---IGLALDCRRAKAHPLFRTLLH------KQLTPLGFNADEI 289 Query: 290 VMLFLKSGKR--GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 +S R C D +L IT V + L E Sbjct: 290 ADALCRSEVRTGACWVGEGYTADYNRGYLEITPPVPDFIRRSLEVGE 336 >gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6] gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6] Length = 487 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 138/365 (37%), Gaps = 37/365 (10%) Query: 1 MFLSPIESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M I VR F++ L P ++VAVSGG DS+ LL L + + G Sbjct: 1 MDDRLINRVRAFLQAQQLFTPNRRVVVAVSGGPDSLCLLHVLVQLQAQ---GGPLLHVAH 57 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISE 112 +DH R + E V+ +C+ + S+ + + G MAAAR+ARYA +++ Sbjct: 58 LDHGFRGPQSAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKMAAARQARYAFLTD 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---------LNL 163 + A + AHT DDQ ETV + + R GL GM + + Sbjct: 118 LVQQQQAHALAVAHTADDQAETVLLHALRGAGP--AGLRGMRERVAAHEWQIEASVVHAA 175 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHAL 216 + RP L R +I ++ + +DPSN + R RVR + + + AL Sbjct: 176 DLVRPLLSTTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQIMPVLARDNPQVVAAL 235 Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + + + + + P + V I + L Y LR +A+ G Sbjct: 236 SRTAQICAEDYAYIQVMLDQIWPDLVQVTPTQIEIDLARWQTLHPALRRYALRRAASSLG 295 Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIG---RVVIDRRANFLWITRAVRNLPTLILYPE 333 + + +E L + + + R+ I +W+ V P+ Sbjct: 296 --VEELSFAQVEAARACLDAALPTQLDLAQGLRLTITPTHARVWV---VGQPQPPTAAPQ 350 Query: 334 ETTVW 338 W Sbjct: 351 LAVPW 355 >gi|153939118|ref|YP_001392881.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. Langeland] gi|152935014|gb|ABS40512.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. Langeland] gi|295320858|gb|ADG01236.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. 230613] Length = 468 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YMNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R R+R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|226950983|ref|YP_002806074.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto] gi|226842830|gb|ACO85496.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto] Length = 468 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R R+R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|148381467|ref|YP_001256008.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 3502] gi|153932046|ref|YP_001385842.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 19397] gi|153936096|ref|YP_001389249.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall] gi|148290951|emb|CAL85087.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152928090|gb|ABS33590.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC 19397] gi|152932010|gb|ABS37509.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall] gi|322807852|emb|CBZ05427.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum H04402 065] Length = 468 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R R+R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14] gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter hamburgensis X14] Length = 345 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 12/281 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F A +++ VSGG DS L+ + G A++VDH L Sbjct: 9 ISATEAKLLFADWKAAHA-LVLGVSGGPDSTALMWLAARWRRAMTRGP-DLIAVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + E R V + + L + H V W +KP++GL AAAR+ARY L+++ A+ A + Sbjct: 67 RPGSAREARDVKHLATSLGMRHRTVRWSGAKPKSGLPAAARDARYRLLAKTARANGALHV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 TAHT DDQ ETV MR R GLS M + D ++RP L + + + L Sbjct: 127 FTAHTRDDQAETVLMRISRGSGI--TGLSAMARETMRD-GFILARPLLHVSKSRLIATLE 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP-- 239 + I++ EDP+N D F R R+R + + ++ + + + N A+ +L Sbjct: 184 KAGIAYAEDPTNRDVSFTRPRLRALMPALAEEGCDVRNLARLASRLARANTALELLADGA 243 Query: 240 -KYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICG 276 +YL + R ++ + + LL + G Sbjct: 244 ERYLALQDRGAPRPGFQTKAFAALSEEIKVRLLLRAIDRVG 284 >gi|313894865|ref|ZP_07828425.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976546|gb|EFR42001.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str. F0430] Length = 425 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 125/333 (37%), Gaps = 24/333 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + F L HILVA SGG DS+ LL L R G + V+H + Sbjct: 10 VEHVLRAHDFFSPL---RHILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGI 63 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R ++ + R+V D C+ I + + + L +AR RY + + Sbjct: 64 RGAASRADARFVKDYCAVQGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREEC 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I TAH DD ETV MR R G+ + + + RP L R +I Sbjct: 124 GCDCIATAHHADDLAETVLMRILRGTGTVGLAAM-------REWDGVLLRPLLTATRAEI 176 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233 S+ R ++ D +N R R+R + I A+ + + L + + Sbjct: 177 VSYARARALAPRSDETNEMCDAMRNRIRNKLLPILRADYNPAVGAALVRLSTLAREEDEF 236 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV--SAAICGGQISLPGYRSMERVM 291 +A L L + + + + L +LR+ A GG+ + R + Sbjct: 237 IAELSADALRRAEDAGGLSTAVLCGLHPALQRRVLRLYWQKATAGGKDFSYLHEEQMRSL 296 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 +F++ + + G + + + + ++N Sbjct: 297 IFVRGVAQIDMPHGYTAVCQYGRLILKKKEIQN 329 >gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826] gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826] Length = 436 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 121/342 (35%), Gaps = 13/342 (3%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 PA L+A+SGG DSM LL AL R+ A V+H D + Sbjct: 17 RPAAFLLALSGGRDSMALLQALTL---RRARLAAPLLACYVNHGWSAAGADWGAFCQREA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + +V + A AR RY ++ +++TAH DDQ ET + Sbjct: 74 TARDVPCEIVKLDWADGGGNAEARARTLRYQALAARLPPRG--VLLTAHHRDDQAETFIL 131 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++ R G L+ M + RP L R I +F+ +++ +DPSN D Sbjct: 132 QALRGSGLDG--LAAMPARRAFAGGEH-WRPLLDVPRAAIEAFVAAEGVAYLDDPSNADP 188 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R A + A+++ + + +S L Sbjct: 189 HYARNRLRLMALPALHEAFPQADAALARSATWLGEALSVQQSLLDGILGAATTVLSWQTL 248 Query: 258 --NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 D+ LLR GQ P R + + + + G V+ + Sbjct: 249 CERYDAATCKALLRRWLQRA-GQPLPPAARLLSFIDALAGANGHAELRYGATVVVQHRGD 307 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 L++ +A PE T W G + + + + G Sbjct: 308 LFLYQASTPQAPPPFAPE--TRWPGIGELSLRAGADLLAGRD 347 >gi|257125521|ref|YP_003163635.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b] gi|257049460|gb|ACV38644.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b] Length = 497 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 15/207 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL+A SGG DS+ L L I+ S + ++H LR ++++++V + Sbjct: 30 DKILIAFSGGPDSVFLYYFLKFFKKKLE---IEVSIVYINHNLRSDVENDLQFVKKFAAE 86 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I + + V+ + + + AARE RY I K IN I T H DD +ET Sbjct: 87 NNIDYYIESINVNKYAKEKKKSVELAARELRYEAIENIRKMINYDKIATGHNLDDNVETF 146 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R + G+ + + I RP L + +I FL N + D +N Sbjct: 147 IFRLLRGTSLSGL-------RSIPKVRENIIRPILEFEKSEILDFLKNENQDYIIDYTNN 199 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK 222 ++ + R +R + D + +K Sbjct: 200 ENNYTRNFIRNKIFP-DFDKINPSFRK 225 >gi|322373967|ref|ZP_08048501.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150] gi|321276933|gb|EFX54004.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150] Length = 421 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 24/310 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ILVAVSGG+DSM LL L++ D I+ ++H R+ ++ E Y+ Sbjct: 17 QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHINHKQRQESEHEETYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I+ ++ AR RY K T ++TAH DDQ ET++M Sbjct: 74 KEHQISFH----YSAFSGKFSENDARTFRYEFFRRVMKDYGYTALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + L+G+ + I RPFL + + ED SNT Sbjct: 130 RLLRGSRLR--HLTGISAVRPFGTG-QIIRPFLHLTKAQLPET------FHFEDKSNTSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R L L + KF++ ++ + L+ + L + I + Sbjct: 181 AYLRNRIRLS----YLPTLSQENPKFKEHLCLLSEEI-GLMEQALEELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315 S LL + + +++ +L+ G V + G ++ + +F Sbjct: 236 QQQSD-AVQLLLLQNYLDSFPDLQLSKGQFNQLLSYLRKKASGKVPLKNGYELVKTQTDF 294 Query: 316 LWITRAVRNL 325 L +L Sbjct: 295 LIRQEESLSL 304 >gi|61216557|sp|Q72C25|TILS_DESVH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 347 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 124/325 (38%), Gaps = 36/325 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R C L Sbjct: 21 HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 77 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V + + + G A R+ARY L++ + A I T H D E V Sbjct: 78 GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 137 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G +CD I RP L ++ + +FL +SW EDPSN Sbjct: 138 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 192 Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKVNNAVA-------- 235 D + R R+R V + DL L F + R + A Sbjct: 193 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLSAAPASPSHVE 252 Query: 236 -MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292 + H I + + L + L + G GQ +++ + Sbjct: 253 GEASAPHDAAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 312 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317 + G R + + RR + ++ Sbjct: 313 AGRGGTRFMFAGCKTATVRRGDIIF 337 >gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana] Length = 662 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 28/309 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKD 68 L I + VSGG DSM L + + ++ G I AI VDH LR+ +KD Sbjct: 81 LKPHNRIALGVSGGPDSMALCVLTAKWKTQGLSCVNKTDGFIDGLVAIVVDHGLRQESKD 140 Query: 69 EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125 E V S++ I + S W + +P+ G L AARE RY +IS +++ A Sbjct: 141 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIA 200 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174 H DDQ E +R R G+ + I + + ++ + P L + Sbjct: 201 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVGPLLDFWK 260 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKV 230 ED+ W EDP+N F R R+R + ++ L + + + R V Sbjct: 261 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLQSGSFKSELQAVISECRRTRSFV 320 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSM 287 + LI + +T + + + LN L + +A+ + + Sbjct: 321 DKVCTDLIHQTVTATDKGYAILDLERLNPSGVKDICLSKYLSAVLQFISQRQRPIRGNTS 380 Query: 288 ERVMLFLKS 296 + ++ ++++ Sbjct: 381 KLLLNYIRA 389 >gi|325955276|ref|YP_004238936.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922] gi|323437894|gb|ADX68358.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922] Length = 431 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 20/242 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYV 73 + + A L+ +SGG DSM L + FS + LR + + + V Sbjct: 14 NQLGKAKFLLTISGGVDSMVLFHIFRQL-------SYTFSVAHCNFQLRGNDSDLDEKLV 66 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D C++ +I V + + Q+ + A R RY ++ T ++ AH + Sbjct: 67 VDTCTKNKIPFFVEKFDVKEYQSTGNYSIEMACRNLRYEWFNKLLITHKFDYLVMAHHLN 126 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQLET+ + R KG+ + +++ I RP L +++I + +Q I W Sbjct: 127 DQLETLLINLSRGSGSKGL-------MAMEEISNKIFRPLLTFSKKEIVDYAMQEKIIWR 179 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 ED +N ++ F R ++R + + L ++ + K + + + LI YL + + Sbjct: 180 EDLTNQENDFIRNQIRNQITPL-LEEIHPQFLKNVNKSLAILAEENQLIENYLQTKKKEL 238 Query: 250 IA 251 Sbjct: 239 FR 240 >gi|71734564|ref|YP_275961.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555117|gb|AAZ34328.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323103|gb|EFW79192.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320329625|gb|EFW85614.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 445 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 103/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V N P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + + RP L R ++ + Q ++W EDPSN D RF R Sbjct: 145 GVRG--LAAMPGQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + L + Sbjct: 202 LRSDVLPLLTSRWPQASTSLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|323694216|ref|ZP_08108392.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum WAL-14673] gi|323501689|gb|EGB17575.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum WAL-14673] Length = 475 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++ +SGG+DS+ LL L + R I+ A+ V H LR A + + ++C L Sbjct: 21 VIAGLSGGADSVCLLRILRCL---RQELGIELRAVHVHHGLRGSEADRDAAFSEELCKEL 77 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI-----NATLIMTAHTFDDQ 131 I V ++ + A R ARY ++ A N I TAH +D Sbjct: 78 DIPFKTVRINAAEEAREAGISVEEAGRRARYRILEAEALLWEKDGRNHVHIATAHHGNDS 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ R KG+ + + + I RP L +R +I +L + ED Sbjct: 138 AETILHNLFRGSGLKGL-------SGIPPVRGRIIRPILWAQRREILDWLRAHGYPYVED 190 Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 +N+ + R +R + + + + + + + + + +++ H Sbjct: 191 STNSGTDYTRNLIRNELLPVITSRINGQAVQNILRAGEHICEADRYLEKTAGEWVRQHAV 250 Query: 248 SI--------------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + + ++ ++L D + Y +R+ G + R ++ V+ Sbjct: 251 AAAAGNAGTENGKETAVFMAAELLKEDRIIRRYAVRIILRELGCPLKDITARHIDNVLEL 310 Query: 294 LKSGKRGCVSI-GRVVIDRRANFLWITR--AVRNLPTLILYPEETT 336 L G V++ + L +R +P I PE + Sbjct: 311 LGKGTGKEVNLPYGMTAGIEYGRLIFSRGKEAYAMPDSIAGPERSG 356 >gi|293399915|ref|ZP_06644061.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306315|gb|EFE47558.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 406 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 16/250 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL S + F +++ RE+A + V + C R I Sbjct: 14 VIGVSGGPDSMALLDMCRSY-------GLSFLVAHMNYQKRESAFRDEELVVNYCQRYEI 66 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + + A AR RY E + + I+ AH DD LET M+ +R Sbjct: 67 PCYVKR-QKKPCKGNFQAFARAERYHFYHELLEKYHGDAILLAHHLDDHLETYLMQMERG 125 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ +T+LYD + RP L ++++ ++ ++ + + D SN D + R Sbjct: 126 SKGVYYGI--QEETVLYD--CKVLRPLLSYTKQELLAYCIEHQVPYGFDESNFTDDYTRN 181 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 R+R H + ++ + NN ++ K + + +D Sbjct: 182 RIRH---SYIDHMSRKEKEELAAEIAEKNNKAQQVLEKTKAFLAIWQYD-AAALCELDEN 237 Query: 263 LLFYLLRVSA 272 +LR Sbjct: 238 FRKQVLRTWI 247 >gi|220927542|ref|YP_002504451.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10] gi|219997870|gb|ACL74471.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10] Length = 481 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 32/341 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V +SGG DS+ LL L+S+ ++ IK + V+H LR + A + +V CS L Sbjct: 29 IVVGISGGYDSVCLLHILYSISNELG---IKIYPVHVNHMLRGDEALRDENFVKSFCSSL 85 Query: 81 R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I H ++ K + L A R ARY + S A A+ I AH+ +DQ ET+ Sbjct: 86 GLEVYIKHIDIAKKAKTEKISLEEAGRNARYEVFSLVAGERGASKIAVAHSRNDQAETIL 145 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ N I RP L R I ++ + D SN Sbjct: 146 MRICR-----GTGLEGLRGMEYKRDN--IIRPLLDADRSQIEEYVNGIGVEAVTDSSNLH 198 Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAV----AMLIPKYLTVHMRS 248 + R R+R V A + + + + V ++ + + K + + Sbjct: 199 TDYFRNRIRIDVIPAINIASGSDITENLLRLSKIVVAEDDYLRYNSELYYQKSVLSERKM 258 Query: 249 IIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRGCVSI 304 + ++L+ I ++ +LR++ G ++ GY + ++ ++G + + Sbjct: 259 YTELDLNVLDEIHQSVRLRVLRIAIEKTCGTLNGWGYIHLDKLNNLIENGRTGAQIDLPH 318 Query: 305 GRVVIDRRANFLWIT--RAVR-NLPTLILYPEETTVWDGRY 342 G + + + + + ++ P ET + R+ Sbjct: 319 GVAAVKSYGSLILKEQGKEHQEQFEKKLIIPGETEI--QRF 357 >gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] Length = 521 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 30/315 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +V ++ AVSGG DS+ LL+ L S K +DH LR + + + Sbjct: 17 LTRMVPEGSLVAAVSGGGDSVALLLLLTS-------TPRKVVVAHLDHSLRPESGQDALW 69 Query: 73 VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + RL +K L A ARE RY +++ AK A I+TAHT Sbjct: 70 VKALAERLGYPFESEKLDVAKIAAERGGNLEATARELRYGFLAKVAKKHQAQAILTAHTE 129 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV ++ + +G+G+ + RP L R +R++L + W Sbjct: 130 DDQAETVLLQLLQGTG-RGLGM--------RPKRGKVVRPLLELSRSTLRAYLRCKQQDW 180 Query: 189 CEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ED SN D +R +R + + +F + + A+ L + L Sbjct: 181 LEDISNADTSLDRNFLRHEIFPRLKARFPQTQTALARFAAISQLDDEALDPLAEQLLLRD 240 Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 R +L + L LR + + +ER + G+ + Sbjct: 241 RRWPCPAYRVAPLLQAPTGLRRRALRQILEHLRLRPEMGWVVQLERAL----HGEAFTLP 296 Query: 304 IGRVVIDRRANFLWI 318 G + RR L++ Sbjct: 297 EG-WQVRRRDGTLFL 310 >gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692] gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692] Length = 338 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 21/306 (6%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR + + H+++AVSGG DS+ LL ++ R + +DH LR + Sbjct: 22 VREELTISLAGTHVMLAVSGGVDSVALLAWAAAM---RDKWGARLFCAHLDHGLRPESSQ 78 Query: 69 EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 E + V +C +L I + Q G+ A R RY + A ++T Sbjct: 79 ERQRVHALCDQLAIPCFSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLLT 138 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH +D E MR R G G + +D + RPFL + + + + Sbjct: 139 AHHANDLAEDSLMRFIR-----GTGWPALAGMAAWDPGRRLLRPFLLTPKHRLHALVQAA 193 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAML 237 + W ED SN D ++R R+R + + L + ++ Q + + Sbjct: 194 GLCWEEDSSNRDPAYQRNRIRHQILPLLIKENPNFLETIAQTWRQAQADTAAFDTMLT-A 252 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKS 296 + V + ++A Q++ ++ + L + G GQ +++ + KS Sbjct: 253 ARQAERVVKQGLLAPRQELESLPAALRLRWYKEILDRMGPGQALSANLGALDALYTEKKS 312 Query: 297 GKRGCV 302 GKR Sbjct: 313 GKRVQF 318 >gi|326405617|gb|ADZ62688.1| tRNA Ile-lysidine synthase [Lactococcus lactis subsp. lactis CV56] Length = 423 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 20/272 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++ +F + + IL+A+SGG DSM L L+ + + I+ ++H Sbjct: 8 FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LRE +K E + ++ ++L++ V + + AR+ RY + N + Sbjct: 61 LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + + RP L+ +E++ + Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFASG-QLIRPLLKFTKEELDA-- 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED +N + R R+R + + DL ++ A+A++ K Sbjct: 172 ----QIYYEDSTNQGLDYFRNRIRNQLIPELTKENPQFSQSISDLSSEIKKALAVINQKI 227 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + + S+ ++ L ++L+ A Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259 >gi|257452690|ref|ZP_05617989.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_5R] gi|317059230|ref|ZP_07923715.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_5R] gi|313684906|gb|EFS21741.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_5R] Length = 444 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 116/316 (36%), Gaps = 28/316 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + ILVA SGG DS+ L+ L + SF + + + H +R E A + ++ Sbjct: 15 QYIQEGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQF 71 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + V + + L A R RY E K + I TAH Sbjct: 72 CLEYARKKNLEIIAKKLDVPSYAKENRQSLEEAGRNLRYKFFQEIRKEKSYHKIATAHHL 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LET + R R + +G+ + RP +++I +L + I + Sbjct: 132 DDHLETFFFRLLRGSSMEGLA-------GISRKQGDRIRPLRDFEKKEILFYLEEHQIPY 184 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 C D +N + + R R+R + L K+++ KV + + L + Sbjct: 185 CHDKTNEEVEYSRNRIRLEL----LPQFDSYNPKWKE---KVASFMEELEENKKGKSIDW 237 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 +D LN+ I QIS+ + + ++ LK G + Sbjct: 238 RDYSEEDFLNVTKLQKEREYLQQKIIYEYILSKQISV-NRKQIHQICTLLKKGGSLSYDL 296 Query: 305 GRVV-IDRRANFLWIT 319 + + +WI Sbjct: 297 KNFWKFKKEYDRIWIE 312 >gi|168180996|ref|ZP_02615660.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916] gi|182668056|gb|EDT80035.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916] Length = 468 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYKLNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R ++R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus'] Length = 472 Score = 193 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 22/321 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L IL+AVSGG DS+ +L + + + + I +DH R+ + E+ +V + Sbjct: 17 LSKGDKILLAVSGGPDSLTMLQLFFEF---KDYFAVDIALIHLDHQFRKESGQELDFVEE 73 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I + AAAR R+ E + L+ AH DDQ Sbjct: 74 KAKDLNINFYTKKVNLPEIIKNENISAEAAARRERFNFFKEIYLKNDFDLLALAHHKDDQ 133 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R +G LSG+ + + + + P L +++I + ++ ++ D Sbjct: 134 AETVLLNLFRGSGLRG--LSGI-EKKININGVQVIHPLLDFSKKEIIKYCQEKKLNPRYD 190 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-LTVHMRSII 250 SN ++ + R +R + I + +K+ K+ + K + +I Sbjct: 191 SSNKENIYSRNIIRNKIIPIIEAEINPAVKEVIARNAKLIAEEENFLNKISFQKYNNCLI 250 Query: 251 AISQDIL--------NIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKR 299 + D L N D + +LR++ + L +E+++ L +G+ Sbjct: 251 SSENDKLILELKKFNNYDKVIRRRILRIAYQKLKDDLEDLYLEHILEIEKLLNNLTTGRG 310 Query: 300 GCVSIGRVVIDRRANFLWITR 320 + V N ++ + Sbjct: 311 IDLPASIRVEISYENLIFFKK 331 >gi|257466551|ref|ZP_05630862.1| cell cycle protein MesJ [Fusobacterium gonidiaformans ATCC 25563] gi|315917706|ref|ZP_07913946.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium gonidiaformans ATCC 25563] gi|313691581|gb|EFS28416.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium gonidiaformans ATCC 25563] Length = 444 Score = 193 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 116/316 (36%), Gaps = 28/316 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + ILVA SGG DS+ L+ L + SF + + + H +R E A + ++ Sbjct: 15 QYIQEGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQF 71 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + V + + L A R RY E K + I TAH Sbjct: 72 CLEYARKKNLEIIAKKLDVPSYAKENRQSLEEAGRNLRYKFFQEIRKEKSYHKIATAHHL 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LET + R R + +G+ + RP +++I +L + I + Sbjct: 132 DDHLETFFFRLLRGSSMEGLA-------GISRKQGDRIRPLRDFEKKEILFYLEEHQIPY 184 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 C D +N + + R R+R + L K+++ KV + + L + Sbjct: 185 CHDKTNEEVEYSRNRIRLEL----LPQFDSYNPKWKE---KVASFMEELEENKKGKSIDW 237 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 +D LN+ I QIS+ + + ++ LK G + Sbjct: 238 RDYSEEDFLNVTKLQKEREYLQQKIIYEYILSKQISV-NRKQIHQICTLLKKGGSLSYDL 296 Query: 305 GRVV-IDRRANFLWIT 319 + + +WI Sbjct: 297 KNFWKFKKEYDRIWIE 312 >gi|302346698|ref|YP_003814996.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC 25845] gi|302150433|gb|ADK96694.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC 25845] Length = 456 Score = 193 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 109/280 (38%), Gaps = 29/280 (10%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + ++ F+ L A LVA+SGG+DS+ LL+ + + + A+ + L Sbjct: 2 LNKIKRFIVSEHLLRVDALYLVALSGGADSVALLLCIKEL-------GYRVEAVHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + ++ D+C R I V + + + AARE RY + + + Sbjct: 55 RGEESLRDEQFCEDLCQRENIPLHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEAL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H +D +ET+ + R G+ + N + RP L R++I Sbjct: 115 GADGVCVGHHKEDSVETILINLVRGTGLSGL-------MGIRPRNHDVIRPLLCVTRQEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L Q +S+ D +N D R ++R + A+ ++ V Sbjct: 168 EDYLHQHAVSFVTDSTNLIDDVVRNKIRLNVLPQLSEINPSVTDAILTTSNHLSEVDAIV 227 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 ++ + K ++ + S + N L ++R Sbjct: 228 QESLKTALGKAVSFINSATQVSSNSLSNEPFQLDLSVVRA 267 >gi|327402415|ref|YP_004343253.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823] gi|327317923|gb|AEA42415.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823] Length = 415 Score = 193 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 21/237 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSR 79 +I VA S G DS LL AL + + +++ LRE ++ + +V D+ + Sbjct: 17 NICVACSAGLDSTVLLEALIQLGHSPK-------ILHINYQLREEDSEKDEEFVRDLAKK 69 Query: 80 LRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V+ + AAR R+A + +A I+ AH DDQ+ET + Sbjct: 70 YELEIEVIHCPKEITKGKGINIQEAARNFRHAHFQQFIHENSANRILLAHHQDDQIETFF 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R G+G + I RPFL +E++R F L+ + W ED SN + Sbjct: 130 LQLLRGSGIFGLGGM-------HAERKGIIRPFLSLTKEELRDFALENKLQWREDWSNQE 182 Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 ++++R + R + L ++ Q++ + ++ + + L +S + Sbjct: 183 NKYKRNQFRNQIIPQLVESNPNLIESIRTIQEVFREEQQSIYANLQRRLQGWEKSFV 239 >gi|289626017|ref|ZP_06458971.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651466|ref|ZP_06482809.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. 2250] gi|330868559|gb|EGH03268.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 445 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 105/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPA--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V N P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R ++ + Q ++W EDPSN D RF R Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAYQHGLNWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + + L + Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQVTTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis] Length = 308 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 I++A+SGG+DS+ LL+ V I+ +A +H +R + ++ +V+++ +R Sbjct: 23 RIVIALSGGADSVCLLLLFKKVSPQ---FGIELAAAHYNHGMRGKESDEDAAFVAELTNR 79 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L++ + + W +P T + AAR RY +S A+ A I AH DD ETV Sbjct: 80 LQVPLFLETAPLKWWQQEPGTKME-AARRLRYDFLSRSAEQAGARWIALAHHADDMAETV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R KG+ + + RP L RR+++ FL W D SN Sbjct: 139 LFHMLRGSGIKGL-------SGIPAKRGPFVRPLLPFRRKELEEFLKAEGQHWRHDSSND 191 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 D + R R+R + L ++ + L + V+ + Sbjct: 192 SDVYTRNRIRHQIMPALLSFNPKLVETLCRNADLLRADAEFLDRECELVYGQ 243 >gi|329925517|ref|ZP_08280391.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5] gi|328939800|gb|EGG36140.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5] Length = 476 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 16/280 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ IE I+VAVSGG DS+ LL LH + R+ ++ V H Sbjct: 9 FVQHIERTAAEFDLWSEGDGIVVAVSGGPDSVALLHVLHEISMHRT--PLRLICAHVHHG 66 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R + E V ++ LR+ + + G AARE RY + + A+ Sbjct: 67 FRRESDQEAEMVRELAESLRLPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKH 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA + AH DDQ ETV+MR R G+G T + + + RPFLR + DI Sbjct: 127 NARSVALAHHADDQAETVFMRLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADI 183 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAV 234 + D SN ++ R +R V + + ++ + ++ V Sbjct: 184 VELCRVCGFQYAVDHSNLQTKYRRNAIRLEVFPFLERYNGQFSSSLNQLAEIVQQEDDFV 243 Query: 235 AMLIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRV 270 + K ++ + + L + L L+++ Sbjct: 244 ELEAAKQFRSLVQENDGRLAFDAPSFLGLHVALQRRLIKL 283 >gi|323487345|ref|ZP_08092645.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum WAL-14163] gi|323399390|gb|EGA91788.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum WAL-14163] Length = 475 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++ +SGG+DS+ LL L + R I+ A+ V H LR A + + ++C L Sbjct: 21 VIAGLSGGADSVCLLRILRCL---RQELGIELRAVHVHHGLRGSEADRDAAFSEELCKEL 77 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI-----NATLIMTAHTFDDQ 131 I V ++ + A R ARY ++ A N I TAH +D Sbjct: 78 DIPFKTVRINAAEEAREAGISVEEAGRRARYRILEAEALLWEKDGRNHVHIATAHHGNDS 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ R KG+ + + + I RP L +R +I +L + ED Sbjct: 138 AETILHNLFRGSGLKGL-------SGIPPVRGRIIRPILWAQRREILDWLRAHGYPYVED 190 Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 +N+ + R +R + + + + + + + + + +++ H Sbjct: 191 STNSGTDYTRNLIRNELLPVITSRINGQAVQNILRAGEHICEADRYLEKTAGEWVRQHAV 250 Query: 248 SI--------------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + + ++ ++L D + Y +R+ G + R ++ V+ Sbjct: 251 AAAAGNAGTENGKETAVFMAAELLKEDRIIRRYAVRIILRELGCPLKDITARHIDSVLEL 310 Query: 294 LKSGKRGCVSI-GRVVIDRRANFLWITR--AVRNLPTLILYPEETT 336 L G V++ + L +R +P I PE + Sbjct: 311 LGKGTGKEVNLPYGMTAGIEYGRLIFSRGKEAYAMPDSIAGPERSG 356 >gi|212550361|ref|YP_002308678.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548599|dbj|BAG83267.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 447 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 119/322 (36%), Gaps = 36/322 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 A I+V VSGG DS LL LH + K A + LR + + + ++ + + S Sbjct: 24 AKIVVGVSGGVDSSVLLYILHHL-------GYKCQAAHCNFHLRGDESCRDEKHAALLAS 76 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + + + + AAR RY + NA +I AH D +ET Sbjct: 77 SMNLVFFKKDFNTQYLAQRNKISIEMAARVLRYKWFEYLRQEQNAEVIAVAHHKGDNIET 136 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R +G+ + + I RP L R++I F I + +D SN Sbjct: 137 LLLNLVRGTGIRGL-------KGIRPKHGKIIRPLLDITRQEIVQFAKDNRIVYVDDSSN 189 Query: 195 TDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 +++ R ++R + + L ++ ++ ++ + K + Sbjct: 190 FEEKHIRNKIRFKLLPLLKTLNPSVEQVLLHTIENLAEVIKIYDSHIEEARNKVFNPDIG 249 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGR 306 I I ++LF +L+ G + + +KS S+ Sbjct: 250 MINIIELQKFPSPESILFEILK---------TYGFGRDVIYNITRAMKSLSSKEFYSLQY 300 Query: 307 VVIDRRANFLWITRAVRNLPTL 328 ++I R FL I R + + Sbjct: 301 ILIKDRERFLLIPREESSKNKI 322 >gi|329117162|ref|ZP_08245879.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020] gi|326907567|gb|EGE54481.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020] Length = 427 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 32/289 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DSM LL LH ++ +I + V+H R + E Y+ Sbjct: 18 QHQRVLIAVSGGVDSMNLLHFLH---VNQKNLEINIAIAHVNHKQRLESDQEEAYLESWA 74 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + I ++ + AR+ RYA + +T N + ++TAH DDQ+ETV+M Sbjct: 75 KKNNIPFYQTAFSGHFS----ESKARDFRYAFFKKIMETENYSALVTAHHADDQVETVFM 130 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + + C + + + RPFL + D+ I ED SN + Sbjct: 131 RLLRGTRLRHLSSIKECQSF---GSGQLIRPFLTIAKADLPD------IFHFEDASNQTN 181 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R L L + +F + +L+ + + L Sbjct: 182 DYLRNRIRNQ----YLPELRQENPQFDFALRDLAQESHLLVQALKDLIYADKLNQFSYFL 237 Query: 258 NIDSTLLF-----YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + F YL R + + E ++ ++ K G Sbjct: 238 GNSRAVQFFCFQEYLERFTDLVI-------SKSQFEDLLSLVRRKKIGT 279 >gi|315612149|ref|ZP_07887064.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296] gi|315315710|gb|EFU63747.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296] Length = 425 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 22/262 (8%) Query: 9 VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + F+R + +++A+SGG DSM L L + ++ I+ V+H R + Sbjct: 7 LNHFLRKEYFKKHSKVVLALSGGLDSMFLFHLLSTYQNELG---IELILAHVNHKQRSES 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E + + + + S+ A ARE RY + K + AT ++TAH Sbjct: 64 DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D + I RP L ++D I Sbjct: 120 HADDQVETILMRLIRGSRLRY--LTGIKESQVVD-GIEIIRPLLHFHKKDFPP------I 170 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED +N ++ + R R+R L L + + + + + ++ + Sbjct: 171 VHFEDQTNQENTYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQATITELSK 226 Query: 247 RSIIAISQDILNIDSTLLFYLL 268 + + ++ + LL Sbjct: 227 KIDVEDLNELFSYSQQTQGILL 248 >gi|78357070|ref|YP_388519.1| ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219475|gb|ABB38824.1| Ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 357 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 18/301 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L A SGG+DS LL+ LH + A+ +DH LR+ + D+ +VS +CS I Sbjct: 59 LAACSGGADSTALLLILHYLAPRMGH---TVVAVHLDHALRQESADDAHFVSQLCSAAGI 115 Query: 83 AHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 V + + GL A R+ARYA ++ A + +I T H DD E V MR Sbjct: 116 RLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDVLMR 175 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R +G GM I + RP L + + +FL W ED SN+D Sbjct: 176 LIRGAGWPALG--GMQAVIPERS---LLRPLLVTEKYKLTTFLEACRCPWREDASNSDPS 230 Query: 199 FERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 F R R+R + + + + + + + + ++P+ L I I++ Sbjct: 231 FTRNRIRNTIIPLLQQENPSFGTTITELWEAAAADRDYWTDVLPE-LAPDKNGQIFIARS 289 Query: 256 ILN-IDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L + L + + A+ GQ ++E + GK G+ R Sbjct: 290 TLQGLHKAGRLRLYKKALEALGAGQPLHASIMALEHAWHRNQGGKCIQFPGGKTARIRHG 349 Query: 314 N 314 Sbjct: 350 G 350 >gi|295114733|emb|CBL35580.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [butyrate-producing bacterium SM4/1] Length = 482 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 62/353 (17%), Positives = 128/353 (36%), Gaps = 45/353 (12%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ L ++V +SGG+DS+ LL L + RS I+ A+ V H LR Sbjct: 21 EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLSDM---RSSLSIRLRAVHVHHGLR 77 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + A + + ++C +L I + + + A R RY + A Sbjct: 78 GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 137 Query: 119 ATL-----------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 I AH DD ET+ R +G+ + + + R Sbjct: 138 EEEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 190 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223 P L R++I +L + +S+ D +N + + R R+R + + + + + + Sbjct: 191 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 250 Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273 ++ + + K+L + ++A+ L ++ Y++R + + Sbjct: 251 GEIIGEADQFFRERAGKFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 310 Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 G + +E ++ L ++G + G N + + Sbjct: 311 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 363 >gi|116510859|ref|YP_808075.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp. cremoris SK11] gi|116106513|gb|ABJ71653.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp. cremoris SK11] Length = 422 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 133/340 (39%), Gaps = 43/340 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + ++F + + IL+A+SGG DSM L L+ + R+ I+ ++H Sbjct: 8 FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E + + + S L I V + ARE RY + N + Sbjct: 61 LRPESDFEEQSLRKMASDLEIPIFVDRFSGEFT----EQKAREFRYHFFEKIMIAENYDV 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + + RP L+ +E++ + + Sbjct: 117 LLTAHHQGDVVETVLMRQITGRPLR--SLQGIADCQPFAKG-QLIRPLLKFTKEELDAAV 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED +N + R R+R + + L + +F +++ + M + Sbjct: 174 ------FYEDSTNQGVDYFRNRIRNQL----IPELTKENPQFSQAISDLSSEIKMAL-TV 222 Query: 242 LTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVML 292 + + + I + I ++ L ++L+ A P + E ++ Sbjct: 223 INQRISELEIIDEKISYHKFISQTKELQHFILQAFFA------QYPEIKVSKKKFEEILH 276 Query: 293 FLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILY 331 ++ ++ + + + +I R L T L Sbjct: 277 IIRRPQQYSAQLNKDFQFVKTKDHFYI--EKRKLITASLE 314 >gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 440 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 17/201 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +L+A+SGG DSM L++V+ + + V+H +RE AK++ +V Sbjct: 13 KTIEKNDRLLLAISGGPDSM---YLLYNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFV 69 Query: 74 SDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D+C + I H ++ + A R RY E+A + I+TAH + Sbjct: 70 IDICKKFNINYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLN 126 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R R G G+ G+ + ++ N I RP L R I +L + N+ + Sbjct: 127 DQAETILTRIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYV 179 Query: 190 EDPSNTDDRFERVRVRRFVRD 210 D +N + R R+R + Sbjct: 180 IDETNLKSDYTRNRIRIELIP 200 >gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B] gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B] Length = 440 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 17/201 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +L+A+SGG DSM L++V+ + + V+H +RE AK++ +V Sbjct: 13 KTIEKNDRLLLAISGGPDSM---YLLYNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFV 69 Query: 74 SDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D+C + I H ++ + A R RY E+A + I+TAH + Sbjct: 70 IDICKKFNINYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLN 126 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R R G G+ G+ + ++ N I RP L R I +L + N+ + Sbjct: 127 DQAETILTRIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYV 179 Query: 190 EDPSNTDDRFERVRVRRFVRD 210 D +N + R R+R + Sbjct: 180 IDETNLKSDYTRNRIRIELIP 200 >gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260] gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260] Length = 442 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 81/298 (27%), Positives = 116/298 (38%), Gaps = 24/298 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGG DS+ L L R +DH +R+ + + +VS++ SR I Sbjct: 24 LIAISGGGDSVALAGLLRRYWRGRQVW------AHLDHGIRKESSRDALFVSELASRWGI 77 Query: 83 AHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V + L A R RY + A + I AHT DDQ ET+ + Sbjct: 78 PCVVERVSLPALRERGESLEMAGRRVRYGFLERTASNASLAFIALAHTADDQAETLLLHL 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G G+ G+ N RP RRE++RSFL + ISW ED SN D F Sbjct: 138 AR-----GTGIWGLAGMPERRGN--WVRPLATFRREELRSFLREEGISWVEDLSNQDRMF 190 Query: 200 ERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 R RVR + A L+ + +V +A + L R + Sbjct: 191 LRNRVRHDLIPWFETHLNPAFSLRAQALAAEARQVRERLAGEAEQCLRWLAREAFPVLAC 250 Query: 256 ILNIDSTLLFYLLRVSAAICGGQIS-LPGY--RSMERVMLFLKSGKRGCVSI-GRVVI 309 ++ L LR+ A G+I LP R E + + R GRV + Sbjct: 251 WDRRSASSLPLPLRMEALRLQGRILGLPTLECRRCEELAQRIGQPGRFRFPWRGRVEV 308 >gi|125622900|ref|YP_001031383.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363] gi|124491708|emb|CAL96627.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363] gi|300069638|gb|ADJ59038.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris NZ9000] Length = 422 Score = 193 bits (491), Expect = 5e-47, Method: Composition-based stats. Identities = 66/340 (19%), Positives = 134/340 (39%), Gaps = 43/340 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + ++F + + IL+A+SGG DSM L L+ + R+ I+ ++H Sbjct: 8 FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR + E + + + S L I V + ARE RY + N + Sbjct: 61 LRPESDFEEQALRKMASDLEIPIFVDRFTGEFT----EQKAREFRYHFFEKIMIAENYDV 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH D +ETV MR + L G+ D + + RP L+ +E++ + + Sbjct: 117 LLTAHHQGDVVETVLMRQITGRPLR--SLQGIADCQPFAKG-QLIRPLLKFTKEELDAAV 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + ED +N + R R+R + + L + +F +++ + M + Sbjct: 174 ------FYEDSTNQGVDYFRNRIRNQL----IPELTKENPQFSQAISDLSSEIKMAL-TV 222 Query: 242 LTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVML 292 + + + + + I ++ L ++L+ A P + E ++ Sbjct: 223 INQKISELEIVDEKISYHKFISQTKELQHFILQAFFA------QYPEIKVSKKKFEEILH 276 Query: 293 FLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILY 331 ++ ++ + + ++ +I R L T L Sbjct: 277 IIRRPQQYSAQLNKDFQFVKTKDYFYI--EKRQLITASLE 314 >gi|227499301|ref|ZP_03929413.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098] gi|227218652|gb|EEI83886.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098] Length = 456 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 127/341 (37%), Gaps = 26/341 (7%) Query: 3 LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ I +R + + + HI++ SGG DS L+ L ++ + +F + ++ Sbjct: 1 MTIINKLRECIIENKLIDEGDHIIIGASGGPDSQFLIYGLKDLMKEMNF---TITLAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAK 115 H R+ A + + V +L + + + A R RY + Sbjct: 58 HLHRKEAILDEQLVEATAKKLGLDFKKKACSMDSYAKQEGLSSEDAGRRLRYEFFRQLKG 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I AH DDQ ETV MR R +G+ + N I RP L R+ Sbjct: 118 DNPKAKIAVAHNLDDQAETVLMRIIRGTGIEGL-------RAMDYKNDDIIRPILDIRKS 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 +I ++L + NI++ D +N + + R ++R + +L K + Sbjct: 171 EILAYLNENNIAYAIDKTNLETDYTRNKIRLELIPSIEKINPNFKSSLVNLSKLSRQEIE 230 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSM 287 +A + + L++ + I+ +D + L ++R + +I ++ Sbjct: 231 ISEAYLANIYEECLSLRQKDAISFKKDKFEALSRALRARIIRYAIFDLKKKIRDISKENI 290 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT-RAVRNLPT 327 + + + +V + NF ++ +NL Sbjct: 291 DSFLALTSLANGKAIIKDDLVFYKSYNFYRLSINEGKNLMP 331 >gi|291087307|ref|ZP_06571896.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1] gi|291075292|gb|EFE12656.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1] Length = 482 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 62/353 (17%), Positives = 128/353 (36%), Gaps = 45/353 (12%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V ++ L ++V +SGG+DS+ LL L + RS I+ A+ V H LR Sbjct: 21 EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLTDM---RSSLSIRLRAVHVHHGLR 77 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + A + + ++C +L I + + + A R RY + A Sbjct: 78 GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 137 Query: 119 ATL-----------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 I AH DD ET+ R +G+ + + + R Sbjct: 138 EEEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 190 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223 P L R++I +L + +S+ D +N + + R R+R + + + + + + Sbjct: 191 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 250 Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273 ++ + + K+L + ++A+ L ++ Y++R + + Sbjct: 251 GEIIGEADQFFRERAGKFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 310 Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 G + +E ++ L ++G + G N + + Sbjct: 311 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 363 >gi|325267936|ref|ZP_08134585.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Kingella denitrificans ATCC 33394] gi|324980622|gb|EGC16285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Kingella denitrificans ATCC 33394] Length = 432 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 113/292 (38%), Gaps = 11/292 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I V +SGG+DS+ LL AL ++ FG SA+ V H L A D ++ D Sbjct: 20 LRGKRICVGLSGGADSVVLLHALAALRDT--FGLADLSAVHVHHGLNAAADDWQQFCRDY 77 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 RL + S + + G+ AAAR ARYA+ + NA + AH DDQ+ET + Sbjct: 78 AQRLGVGFSAAQVQVDAGKLGIEAAARTARYAVFA----EQNADFVALAHHRDDQIETFF 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + R + LS M + + RP L R +I + + + D SN + Sbjct: 134 LAALRGGGLR--ALSAMPEQRALTEKTVLWRPLLAFSRAEIEQYAQDNALMFVHDDSNEN 191 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT--VHMRSIIAISQ 254 F R +R L + + A+L +R + Q Sbjct: 192 PAFLRNWLRGRWLPDLAARLPHYAEHLHSSIALLQEERALLEEVAAQDWQAVRCAQGLHQ 251 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 S L + A G + P S+ +L+ +RG + R Sbjct: 252 ARWQAFSPARQRQLLHTFARQYG-LGAPTAGSLHLWADWLRQAERGEWRLPR 302 >gi|209528292|ref|ZP_03276753.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328] gi|209491278|gb|EDZ91672.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328] Length = 344 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 123/330 (37%), Gaps = 26/330 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V +RS L +LVAVSGG DSM L+ L + ++ + + DH R Sbjct: 12 AKVHISLRSRNLLPSGEGLLVAVSGGQDSMCLIRLLLDLQEKWNW---RIAIAHCDHQWR 68 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + Y+ + ++ ++ AAARE RY ++ E A+T N ++ Sbjct: 69 RDSVANADYIEQLGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180 T HT D+ ET+ R G+ I + RP L R++ F Sbjct: 126 TGHTKSDRAETLLYNLIRGSGADGLSSLVWSRPIFGRETETKPILVRPLLEITRKETGEF 185 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 QR++ ED +NTD + R R+R + + K+++ ++ A + + Sbjct: 186 CQQRDLPIWEDSTNTDVSYARNRIRHQLIPELENKFNPKVEQALAQTAELLRADVEYLEQ 245 Query: 241 YLTVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 R IA + + + L ++R + + + +E++ Sbjct: 246 QADELYRVAIASAPCNNGYRVNRHQLKSAPLALQRRVMRRLLEEVLRKGT--NFEQIEKL 303 Query: 291 MLFLKSGKRGCV--SIGRVVIDRRANFLWI 318 + + R G + ++W+ Sbjct: 304 TRLISAPNRSQSDPFPGGAIAQVEGEWIWL 333 >gi|170757599|ref|YP_001783167.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra] gi|169122811|gb|ACA46647.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra] Length = 468 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + ++ +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R ++R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ +I + L ++ +LR + + Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|294777183|ref|ZP_06742640.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510] gi|294449052|gb|EFG17595.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510] Length = 442 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 121/336 (36%), Gaps = 42/336 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF I+ + +LVA+SGG+DS ++L A + Sbjct: 9 MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 61 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V+++C L + V + S+ + AARE RY + K Sbjct: 62 HLRGEESDRDERFVNELCKGLGVTLHVTHFDTVTYASRHHVSVEMAAREMRYDWFEQLRK 121 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AH DD +ET + R G+ + N I RP L R+ Sbjct: 122 ERGMAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 174 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 DI +L + D +N D + R ++R R + ++ ++ D+ + Sbjct: 175 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 234 Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 N + + + +I + ++ + + LLF +L G+ S+ Sbjct: 235 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 281 Query: 288 E--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + V L + + R L I R Sbjct: 282 QIGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 317 >gi|254884290|ref|ZP_05257000.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA] gi|319640622|ref|ZP_07995340.1| cell-cycle protein [Bacteroides sp. 3_1_40A] gi|254837083|gb|EET17392.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA] gi|317387756|gb|EFV68617.1| cell-cycle protein [Bacteroides sp. 3_1_40A] Length = 434 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 121/336 (36%), Gaps = 42/336 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF I+ + +LVA+SGG+DS ++L A + Sbjct: 1 MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V+++C L + V + S+ + AARE RY + K Sbjct: 54 HLRGEESDRDERFVNELCKGLGVTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AH DD +ET + R G+ + N I RP L R+ Sbjct: 114 ERGMAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 DI +L + D +N D + R ++R R + ++ ++ D+ + Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226 Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 N + + + +I + ++ + + LLF +L G+ S+ Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273 Query: 288 E--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + V L + + R L I R Sbjct: 274 QVGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 309 >gi|270296347|ref|ZP_06202547.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273751|gb|EFA19613.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 424 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE + F ILVA+SGG+DS+ +L A + LR Sbjct: 10 IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ V + + + + AARE RYA + + +A Sbjct: 59 ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L R++I + Sbjct: 119 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L ++ D +N D + R ++R + + ++ + D N Sbjct: 172 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + T SI A+ Q+ T+LF +L Sbjct: 232 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 264 >gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170] gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170] Length = 462 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 129/353 (36%), Gaps = 16/353 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V VSGG DS+ LL ++R + +A+ DH LR + E R V L Sbjct: 34 IAVGVSGGVDSLTLLAFAARWAAERGG---RCTAVCFDHGLRAASAGEARLVETTARSLG 90 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V+ W P +G+ AAR AR + ++ AH DDQ ETV R R Sbjct: 91 AEAVVLRWAGPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLAHHRDDQAETVLQRLGR 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + I RPFL R I + + + W EDPSN D ++R Sbjct: 151 GSGADGLAAMAALSS---RGEARILRPFLEVPRAAIEASARRIGLVWAEDPSNHDPHYDR 207 Query: 202 VRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R+R +D L + D R ++ L+ + + +D Sbjct: 208 ARLRAAAAPLDQAGLSAKALAASAARLGDDRAFWARHLSALLAGATRACGEGWLVLDRDA 267 Query: 257 LNIDST-LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 L L +A G R + ++ + + G + + Sbjct: 268 LAASDPWAAARALAWAAGAIAGSERAADPRPIAALLATPPAPGQVHALAGCLWQSKPRGA 327 Query: 316 LWITRAVRNLPTL--ILYPEETTVWDGRY--QFQNLSDSLIQIGPQSYRKADV 364 L + R R L + P E+ +WDGR+ + ++ +G ++K Sbjct: 328 LVLCRECRGLDRRRWAVPPGESLLWDGRWLCRAGRGGLAVSALGAAGWQKLAP 380 >gi|46579870|ref|YP_010678.1| hypothetical protein DVU1459 [Desulfovibrio vulgaris str. Hildenborough] gi|46449286|gb|AAS95937.1| conserved domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234129|gb|ADP86983.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris RCH1] Length = 390 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 124/325 (38%), Gaps = 36/325 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R C L Sbjct: 64 HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V + + + G A R+ARY L++ + A I T H D E V Sbjct: 121 GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 180 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G +CD I RP L ++ + +FL +SW EDPSN Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 235 Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKVNNAVA-------- 235 D + R R+R V + DL L F + R + A Sbjct: 236 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLSAAPASPSHVE 295 Query: 236 -MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292 + H I + + L + L + G GQ +++ + Sbjct: 296 GEASAPHDAAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 355 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317 + G R + + RR + ++ Sbjct: 356 AGRGGTRFMFAGCKTATVRRGDIIF 380 >gi|270290204|ref|ZP_06196430.1| tilS/hprT [Pediococcus acidilactici 7_4] gi|270281741|gb|EFA27573.1| tilS/hprT [Pediococcus acidilactici 7_4] Length = 457 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 10/257 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A ++VAVS G DS L+ AL L+ + + + V+H LR + E ++ C++ Sbjct: 20 APVIVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEDFLRQWCAK 76 Query: 80 LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 R+ W + P TG+ AAAR RY ++ + NAT ++TAH +Q E+ M+ Sbjct: 77 RRLMFVSTKWPRELHPDTGVEAAARRFRYDFFAKVMQRYNATTLLTAHNATEQAESFLMQ 136 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R L G + + + RPFL+ + + + + +++W ED +N D Sbjct: 137 VVRGGWL--SQLRGTPEERSFATG-RLVRPFLKISKPTLVALAQENHLTWFEDETNQQDD 193 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQD 255 + R RVR + ++ + ++ + + + + L + Sbjct: 194 YLRNRVRNQLLPALQAENPRVVEHIGQYQTEITEQDQLIKEISRQKLAQLRQGSQYQLPK 253 Query: 256 ILNIDSTLLFYLLRVSA 272 LL+ Sbjct: 254 FKAESRLWQKQLLKQLV 270 >gi|116628949|ref|YP_814121.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC 33323] gi|238853548|ref|ZP_04643920.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4] gi|311111243|ref|ZP_07712640.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22] gi|122274053|sp|Q046D9|TILS_LACGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|116094531|gb|ABJ59683.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC 33323] gi|238833844|gb|EEQ26109.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4] gi|311066397|gb|EFQ46737.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22] Length = 431 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 130/317 (41%), Gaps = 17/317 (5%) Query: 7 ESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E FF ++ + L+A SGG DS+ L L + L + S + +DHCLR+ Sbjct: 3 EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPNPSK---QLIVAHLDHCLRK 59 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 + E + + + +I SW + PQTG+ A ARE RYA ++ K ++ Sbjct: 60 DSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKKYQVDYLL 119 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD +E + ++ R M + + ++ + RP ++ ++ + + + Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNL---DSMRLLRPLIKYSKDQLLEYDKR 176 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + + ED +N +D R R+R +V + L + + + + + A+L + Sbjct: 177 NGLDYIEDETNFEDDTLRNRLRHYVVPL----LKKETNHLVENAYRFSESAALLSDCQNS 232 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGC 301 I+ I D L+ ++ Y+ + + F ++ K+ Sbjct: 233 FFESLILPI--DFGKALRGKKSDLINLNENQLAAFFDYLVYKKWHQRVHFDEIRRRKKAT 290 Query: 302 VSIGRVVIDRRANFLWI 318 + + ++ ++ Sbjct: 291 FNKENFQLIFYQDYYYL 307 >gi|149197877|ref|ZP_01874926.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155] gi|149139098|gb|EDM27502.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155] Length = 417 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 26/281 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +++ SGG+DSM LL + S+ G++ + +H LR + +K + ++ Sbjct: 7 LKGEKRLVL-FSGGADSMALLHLMQSL------GELDI-VLHFNHNLRGDDSKQDEQFCR 58 Query: 75 DVCSRLRIAHSVVSWKNSKPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + C + VV+ K + G AR R + +H N I AH DD Sbjct: 59 NYCEDNGLELIVVNLDLDKERHANEGDEQLARRLRLQFLEDHYCGWN---IYLAHHLDDV 115 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ +MR+ R GL + L + RP L RE +RS+L + N++W ED Sbjct: 116 KESFFMRAMRGA--NSSGLCALRRERKLGT-LTLIRPLLDYSREQLRSYLKENNLTWRED 172 Query: 192 PSNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 SN D + +R VR + + L K Q + L M+ Sbjct: 173 SSNQDADYCDRNYVRNEL----MPKLSRLGKGLQHTLKHIAEDDDYLQSAAEKELMQGF- 227 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 S+ LN+ + L +LR G +P S+ R++ Sbjct: 228 -TSKLFLNLHAALKARVLRFFLE-NQGLAYVPTQASINRLL 266 >gi|307707910|ref|ZP_07644385.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261] gi|307615975|gb|EFN95173.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261] Length = 425 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 35/270 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A +++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRVESDWEEQELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFLS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNKENHYFRNRIRNS----YLPELEKENPRFRDAILSIGNEI------- 214 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + +AI++ NID L+ LL S Sbjct: 215 ----LDYDLAIAELSKNIDVENLYQLLSYS 240 >gi|218283935|ref|ZP_03489803.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989] gi|218215514|gb|EEC89052.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989] Length = 394 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 119/310 (38%), Gaps = 31/310 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +VA SGG DSM LL L+ D V++ R+TA + V D C + Sbjct: 2 SKCVVACSGGPDSMALLDQLNKQGKD-------IVVAHVNYKHRDTADRDENIVKDYCEK 54 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + A AR+ RYA E A +A ++ AH DD +ET + Sbjct: 55 YDIP--VRVCYPVHEKGNFQAWARDVRYAFFEEVADAFDAKILYVAHQMDDVIETYLFQK 112 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R+ GL I RP L + +++ + + +S+ D SN + + Sbjct: 113 NRNMICDWYGL----KEKSIRQGYQIIRPLLNFTKSELQQYCNENGVSFGIDESNLTNHY 168 Query: 200 ERVRVRR-FVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 R +R + + + A LK++ ++ A+ + + S++ Sbjct: 169 TRNVIRHTQIEKMSRDEKEAWILKIQNENEVWQIKRKAIEEFFKDW-NKDVDSLLDQEDA 227 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 L +D+ L L + ME + + LK + + I +++R Sbjct: 228 WLYLDTFLFHSL-----------HHHFSKKYMEELCVQLK--RNVLIEIENYLLERHGGK 274 Query: 316 LWITRAVRNL 325 L+ + +++ Sbjct: 275 LYFMPSPKDV 284 >gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211] gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211] Length = 425 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 16/253 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +L+A+SGG DSM LL L+ R +I+ ++H +R+ + E + + Sbjct: 18 HHRKVLLAISGGLDSMTLLDWLYKY---REKLEIEIFLAHINHGVRKESDFEEEELKKIA 74 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +L ++ S+ AR+ RYA + N T ++TAH DDQ ET++M Sbjct: 75 KKLGVSIFTSSFSGPFS----EQKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFM 130 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + +SGM + + N + RP L ++ + I ED +N ++ Sbjct: 131 RILRGS--RLFHISGMKEKQKFA-NGELIRPLLSFQKSNFPP------IFHFEDWTNQEN 181 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + K +L +++ L + S+ Sbjct: 182 HYLRNRIRNEYFPLLEQENPQFRKHLIELGTEISQMQDALAYLTKNIVATSLQEFQSQPY 241 Query: 258 NIDSTLLFYLLRV 270 ++ S LL L+ Sbjct: 242 SVQSFLLQAYLKK 254 >gi|118580663|ref|YP_901913.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379] gi|118503373|gb|ABK99855.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379] Length = 485 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 88/423 (20%), Positives = 149/423 (35%), Gaps = 37/423 (8%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 + L P +++A+SGG+DS LL L + ++H LR + + Sbjct: 17 QQLFAPGDTVILALSGGADSCVLLDILAGLTE----FSPCLVIAHLNHQLRGAESDGDEL 72 Query: 72 YVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + R + S + + L A R AR + + A++ +AT I AH Sbjct: 73 FCRSLAERYGLPFRSRSLDVAALARRQGLNLEDAGRRARLEFLEDVARSFHATAIALAHH 132 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV MR R G+ + + RP L RR +I ++L R + Sbjct: 133 ADDQAETVLMRLLRGSGMTGL------RGMSFRGPGGRIRPLLNSRRCEIDAYLRARGLE 186 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 ED SN D F R R+R + + ++ + + +L + R Sbjct: 187 HREDASNRDTAFLRNRIRHELLPLLEQYNPAIRERLVGTAALLADEDDLLEGMAEDLAAR 246 Query: 248 SI------IAISQDILNIDSTLLFYLL--RVSAAICGGQISLPGY--RSMERVMLFLKSG 297 + ++ S L + L L R+ A + G + ++ME +M + Sbjct: 247 ACHFGSDSVSCSLTRLEGEPQALKRRLVRRILAHLTGNGEHVTRRHIQAMEDLMDSPRPN 306 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW-DGRYQFQNLSDSLIQIGP 356 + G + R R LP L E + GRY + S + Sbjct: 307 ATLNLFRGIRAVREYGTL----RLSRGLPPEDLPHEARELPGPGRYILSDGS----LLTL 358 Query: 357 QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416 P+ +P +A L P + P R F + + F + Sbjct: 359 APATAPPDPASLPATVALFDLEKAPFPWRVRT-FTPGDRIAP-FAMAGSKKVKELFMERR 416 Query: 417 IPR 419 +PR Sbjct: 417 VPR 419 >gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b] gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b] Length = 408 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 21/264 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LVAVSGG DS+ LL L V H LRE + +E +V+ V + Sbjct: 2 KKVLVAVSGGVDSIVLLDRLVK-------QGWDVGVAHVHHGLREASDEEYTFVAHVAAS 54 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++A + + A R+ARY + + TAH DD LETV ++ Sbjct: 55 YQVAFH--GTRLHFQEGASQAHYRKARYHFFEDVMNEHGYDTLATAHHADDVLETVLIQL 112 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R+ E + G+ + ++ + RP L+ + + + + ++W ED +N + + Sbjct: 113 HRNVIE----VKGIPERRVFGRG-TLIRPLLKETKAQLIEYARKNELAWREDATNQEVTY 167 Query: 200 ERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R R+R V + +Y K+ + + I + + M++ Sbjct: 168 LRNRIRHEIIPRLKQVWPTVVDDVYDTAKQVYAEWDRRYQSCEQWIEANVELGMKAFHVK 227 Query: 253 SQDILNIDSTLLFYLLRVSAAICG 276 + + S + + R+ + G Sbjct: 228 LDEFNRLSSLERYTVARLLSRRYG 251 >gi|160892003|ref|ZP_02073006.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492] gi|156858481|gb|EDO51912.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492] Length = 422 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE + F ILVA+SGG+DS+ +L A + LR Sbjct: 8 IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 56 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ V + + + + AARE RYA + + +A Sbjct: 57 ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 116 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L R++I + Sbjct: 117 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L ++ D +N D + R ++R + + ++ + D N Sbjct: 170 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 229 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + T SI A+ Q+ T+LF +L Sbjct: 230 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 262 >gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1] gi|300073983|gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control, protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 142/381 (37%), Gaps = 18/381 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS LL + G + + + V H L A + + C++L Sbjct: 13 LAVAYSGGLDSTVLLWVAAQWARENG-GTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + +G+ AAR ARYA + + A +++TAH DDQ ETV ++ Sbjct: 72 LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131 Query: 141 RDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ C+T D L ++RPFL R + + ++ W ED SN+D Sbjct: 132 RGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 191 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQD 255 R+ R +R V ++ A +L + + H R + Sbjct: 192 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDEHLRMP 251 Query: 256 ILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311 L + L+R + G + +P M+ + +L + CVS + R Sbjct: 252 PLRELSEQRFLNLMRHWFGLRG--MRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHR 309 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371 +++ R P T WDG+ Q L + D G P Sbjct: 310 YRERVFLA-PRRMPPDEGAVA--TLRWDGQAQ-WRLPAWYGTLHFDRIGGDDARPGFDPA 365 Query: 372 IAQ-RALSSMPSKEGGKPLLA 391 Q ++L + G + LA Sbjct: 366 WLQGQSLLACGRSGGERIRLA 386 >gi|284929532|ref|YP_003422054.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A] gi|284809976|gb|ADB95673.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A] Length = 319 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 128/327 (39%), Gaps = 22/327 (6%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ S V +++ L ILVAVSGG DS+ LL + + R + S Sbjct: 1 MWTSLHTKVHKTLQNSLILPPKKRILVAVSGGQDSLCLLKIIMDL---RIKWDWEVSIAH 57 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 DH + +V + I + + K + ARE RY ++ E A+ Sbjct: 58 CDHGW-PSDTGISDHVKKISEEWNIDFYLKRTQILKITESI---AREWRYKVLLEVAREN 113 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 N T I+T HT D ETV R G LS + +T ++ + RP L R + Sbjct: 114 NFTAIVTGHTLSDLAETVLYNLIRGAGSHG--LSVLTNTRPLTNSINLVRPLLNTSRTET 171 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 F Q N+ ED NT+ + R R+R+ + +++K KV A + Sbjct: 172 LFFCRQLNLPVWEDEVNTNFDYARNRIRKQLVPYLKLNFNPQVEKTLYQASKVLKAESDY 231 Query: 238 IPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMER-- 289 + K ++ + LN I L ++R+ ++ P + +E Sbjct: 232 LEKEAGKILKLASNKKKTQLNKKILQTIPLALQRRVIRMFLQH--NKLQAPNFEQVEEGV 289 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFL 316 ++ G + +VV++ +++ Sbjct: 290 KLINSPHGSQTSSFSVQVVLEVYDDYI 316 >gi|91214572|ref|ZP_01251545.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755] gi|91186999|gb|EAS73369.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755] Length = 437 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 33/322 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F S I+S F L P L+A+SGG DS+ L +S+ + F + Sbjct: 5 FKSHIQSE--FPELLTTP--FLIAISGGLDSVVLAHLCNSL-------HLDFGLSHCNFQ 53 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR + + +V ++ L+ + +++ + ++ + AR+ RY E +T Sbjct: 54 LRGLDSTRDEEFVENLSISLKCEFFIKTFQTESIAKESKSSIQLTARKLRYDWFQELIET 113 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++TAH +D LET + R KG+ T + N I RP L+ + + Sbjct: 114 TSHNYLLTAHHLNDDLETFIINLSRSTGLKGL-------TGIPQRNSHILRPLLKFSKAE 166 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 ++ + ++ NI W ED SN ++ R +R + L ++ F+ K+ Sbjct: 167 LKEYAIKHNIYWREDQSNASTKYLRNEIRHKIVPSLLELNSQFLESFESTLEKL-KQTEH 225 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERV--M 291 LI Y +S+++ + NID L + + G G+ E V + Sbjct: 226 LIKDYTASLHQSLVSEEANRFNIDIEKLKTHPNPRGILYQLLEGF----GFTQWEDVYHL 281 Query: 292 LFLKSGKRGCVSIGRVVIDRRA 313 L ++GK ++V DR Sbjct: 282 LDAQTGKIVKSPTHQLVKDRNK 303 >gi|330894611|gb|EGH27272.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. mori str. 301020] Length = 445 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V N P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R ++ + Q ++W EDPSN D RF R Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + L + Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|330985127|gb|EGH83230.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 445 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V N P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R ++ + Q ++W EDPSN D RF R Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + L + Sbjct: 202 LRSDVLPLLTSRWPQASTSLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|322515783|ref|ZP_08068728.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC 49124] gi|322125745|gb|EFX97063.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC 49124] Length = 280 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 22/278 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ Sbjct: 17 QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEEDYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I ++ AAR RY + K + + ++TAH DDQ ET++M Sbjct: 74 KEHKIPFH----YSAFSGKFSENAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+CD + I RPFL + + ED SN+ Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKAQLPIT------FHFEDKSNSSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + L + KF++ + + +A L+ K L + I + Sbjct: 181 AYLRNRIRLT----YIPTLSQENPKFKEHLCLLADEIA-LMGKALEELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + + YLL S + LP ++M +L+ Sbjct: 236 QQQTDAVQYLLIQSYLESFPDLQLP-KGQFNQLMSYLR 272 >gi|302390614|ref|YP_003826435.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM 16646] gi|302201242|gb|ADL08812.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM 16646] Length = 471 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 102/278 (36%), Gaps = 23/278 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L +LV VSGG DS+ LH +L R I + ++HC R + + ++ +V Sbjct: 17 LQKGDKVLVGVSGGPDSVC---LLHLLLRHREEFGISLAVAHLNHCFRGQESDEDETFVR 73 Query: 75 DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 D+ + + V K AAR RYA + A + AH +D Sbjct: 74 DLAGQWGLPFYGEKVDVPAYIKKTGLSPEDAARRVRYAFFERVRRETGAGKVALAHNSND 133 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + ETV M R +G+ + + RP + R+ I +L + I + Sbjct: 134 REETVLMNIFRGTGLEGL-------VGIEAVRDHYIRPLIEVERDSIEDYLKREGIPYRI 186 Query: 191 DPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVK----VNNAVAMLIPKYL 242 D +N + R ++R + + L +K+ ++ + + + Sbjct: 187 DSTNLQTFYYRNKLRLELIPLIKREYCPHLSAALKRLSEIASVDISLLGKLTDEAFARVV 246 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ ++ + L + ++R + G + Sbjct: 247 RAMPDGVMIDTKKFNELHEALKYRVVRKAVERILGDLR 284 >gi|332653694|ref|ZP_08419438.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae bacterium D16] gi|332516780|gb|EGJ46385.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae bacterium D16] Length = 470 Score = 192 bits (489), Expect = 8e-47, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 130/338 (38%), Gaps = 42/338 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + + +L AVSGG+DS+ LL L+ + + +F A DH LR + + ++ Sbjct: 13 RLIPPGSTVLCAVSGGADSVYLLHRLYCLRRELNF---TLVAAHYDHRLRGAESTQDAKF 69 Query: 73 VSDV------CSRL-----------RIAHSV----VSWKNSKPQTGLMAAAREARYALIS 111 V + RL + V+ + ++ + GL AR+ RYA + Sbjct: 70 VEEFVRLCCPAERLYAPEGPGKELPGVRLITGGGDVAGEAARLRQGLEETARQMRYAFLQ 129 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ + A LI TAH D ETV + R +G+ + RP L Sbjct: 130 TAAQEVGANLIATAHNASDNAETVLLHLGRGSGLRGLAGM-------PPKRGNLIRPLLT 182 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224 RE+I ++L R + W ED +N DD + R R+R V + L + + Sbjct: 183 TSREEIENYLRYRGLPWREDATNRDDAYARNRLRHQVLPVLEDLFPGFLSRISQTCAHLR 242 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284 + +++ A + +I + + + ++ R+ Sbjct: 243 EDEDYLSSLAAQAVESARR-EGEDLILPAAALADQPQSVAIRGARMLIGSMTAGNDNCAA 301 Query: 285 RSMERVMLFLK-SGKRGCVSI-GRVVIDRRANFLWITR 320 +E ++ + S + + G + RR L ++R Sbjct: 302 PHLEGLLNLCRGSDPSARLDLPGGLTARRRYGELVLSR 339 >gi|312130162|ref|YP_003997502.1| tRNA(ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132] gi|311906708|gb|ADQ17149.1| tRNA(Ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132] Length = 430 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 28/245 (11%) Query: 10 RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66 + F++ L P+ LV VSGG DSM LL +S + + LR E A Sbjct: 4 KIFLKYLPNPSKEKFLVGVSGGKDSMALLDLFYS-------EGFQVEVAHANFQLRGEEA 56 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLI 122 + + V C I V + K +T AARE RY + N T + Sbjct: 57 NLDEQLVHTYCRVKNIPFHVKRFDTKKHAKESKTSTQMAARELRYQWFYQLLAQRNLTAV 116 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH D +ET+++ + KG+ + I RP L E I +L Sbjct: 117 ALAHHRRDNIETLFLNITKGTGPKGL-------QGIPPRGENIIRPILEATPEQILQYLE 169 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVA 235 + I W ED SN++ ++R ++R V + +++F++L + A Sbjct: 170 ENKIPWREDQSNSETYYQRNKIRHLVLPLLKEINPGLEDTFLQNLERFRNLNLIFQEAHR 229 Query: 236 MLIPK 240 + Sbjct: 230 EFESQ 234 >gi|313884543|ref|ZP_07818304.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola ACS-139-V-Col8] gi|312620327|gb|EFR31755.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola ACS-139-V-Col8] Length = 492 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 7/259 (2%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +++ VSGG DSM LL + +L+ + + +H LR A + V Sbjct: 17 QWQQTDKLVMGVSGGLDSMVLLDLMIKLLALKENQGKEIIVAHFNHHLRSDADLDASLVE 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C ++ + + W+ + + AREARY + + +++TAH +D ET Sbjct: 77 SFCHHHQLTYFIGEWQEPSHK-NTESLAREARYHFFANVLAASQSQVLVTAHHSNDLAET 135 Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLW-----ISRPFLRCRREDIRSFLLQRNISW 188 + +R R + KG+ G+ IL + RP L + ++ + + + Sbjct: 136 LMIRLIRGTSFKGLAGIRRYSQRILTTDQGQGVATDLVRPLLSISKAELLDYAEHFKLEY 195 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ED +N+ R RVR+ + + + + A Y+ + Sbjct: 196 REDSTNSSRHHLRNRVRQDLLPWLEGENPQFLANLESMTQAAAEAYQENFETYMAQEDQL 255 Query: 249 IIAISQDILNIDSTLLFYL 267 ++A+ ++ +D L Sbjct: 256 VLALGENGWILDRPTWRQL 274 >gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152] gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152] Length = 436 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 83/415 (20%), Positives = 152/415 (36%), Gaps = 51/415 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + I F++ +L+A+SGG DS+ L H + + + + Sbjct: 5 FKNHINKNFPFLKD----KKLLIAISGGLDSVVLTHLFHQL------NIAEIALAHCNFK 54 Query: 62 LR-ETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 LR + + + +V+ + ++ I + + + ARE RY E Sbjct: 55 LRNKASDLDEEFVNKLSQITSNQIFIKSFQTEKISENQKKSIQITARELRYNWFQELMDE 114 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I+TAH DD LET + R G T + +N I R L R + Sbjct: 115 HQLDYILTAHHADDNLETFLINLTRGSGLDGF-------TGIPAINGNIVRTLLPFSRSE 167 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I +F NI W ED SN ++ R ++R V + ++ F + + + Sbjct: 168 ILNFAKSNNIEWREDASNASIKYVRNKIRHKVIPVLKEINPSLLESFSNSIHHLKEVQEI 227 Query: 237 LIPKYLTVHMRSIIAISQDI---------LNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + K + V +S++ + I L L+ +L+ + Sbjct: 228 VNDKIVDVTKQSVVKEKESIKIDIQKIKELANPKAYLYQILKEYHFTEWNDVY------- 280 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347 +L +SGK R++ DR +FL +++ N + E + Q NL Sbjct: 281 --HLLDSQSGKAVYSKTHRLLKDR--SFLILSKLENNTNEVYRITENDVL---ISQPLNL 333 Query: 348 S-DSLIQIGPQSYRKADVPSGI---PPIIAQRALSS--MPSKEGGKPLLAPFSRF 396 + + +I PQ+ V + P + ++ PS GK L+ + + Sbjct: 334 NFQEVTEIKPQNKHSIYVDKDLLNYPLYLRKKQNGDYIYPSGMQGKKKLSKYFKD 388 >gi|300114833|ref|YP_003761408.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113] gi|299540770|gb|ADJ29087.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113] Length = 442 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 130/355 (36%), Gaps = 30/355 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL +L + SAI ++H L + + + + C+ L + Sbjct: 23 VAYSGGLDSQVLLYSLVQLGPK--LPGSLISAIHINHGLHPRSGEWSLHCRESCAALGVG 80 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + V + AAAREARY + + ++TA DDQ+ET+ ++ R Sbjct: 81 YEEVKVNGHPRKGESPEAAAREARYGALRS--RIARGECLLTAQHQDDQVETLLLQLLRG 138 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + RP L R +++ + Q + W EDPSN D F+R Sbjct: 139 GGPA---GLAAMAKAAPFGQGRLLRPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDRN 195 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R + L L+ + + A R ++A+S D + Sbjct: 196 YLRHKI----LPLLWQRWPGLGRTLSRAALHQADAAWLLDQQAQRELVAVSADKQGLSVQ 251 Query: 263 LLFYL--------LRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311 L L LR Q+ LP ++R++ L + V+ + R Sbjct: 252 ALQALAPPQRRNSLRYWFKQM--QLPLPDSIHLQRILEEVLLAPEDAQPLVAWPGTEVRR 309 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 + L+ A + LP E VW+G + + P+ R + + Sbjct: 310 YRDRLY---AQKPLPPHDAA--EVLVWEGVEPLALPAGVGGVLVPKRTRGLGLDA 359 >gi|257487064|ref|ZP_05641105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 445 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V N P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M D + + RP L R ++ + Q + W EDPSN D RF R Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLHWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + + L + Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQVTTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|317480455|ref|ZP_07939551.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36] gi|316903402|gb|EFV25260.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36] Length = 422 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 IE + F ILVA+SGG+DS+ +L A + LR Sbjct: 8 IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 56 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +V +C R+ V + + + + AARE RYA + + +A Sbjct: 57 ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 116 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I AH DD +ET+ + R G+ + N I RP L R++I + Sbjct: 117 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 L ++ D +N D + R ++R + + ++ + D N Sbjct: 170 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 229 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + + T SI A+ Q+ T+LF +L Sbjct: 230 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 262 >gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767] gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii] Length = 502 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 20/289 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E +R ++ +P I+VA+SGG DS+ L L ++ +AI++DH R + Sbjct: 9 EVLRKCFKNGTFPERIVVALSGGVDSLCLTYLLGQFKRIYK-PSLQITAITIDHKYRAGS 67 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLI 122 E V + + H V + + T ARE RY + + + ++ + Sbjct: 68 GKEAEKVGVLVRPWGVKHIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKSL 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLS-----GMCDTILYDLN--LWISRPFLRCRR 174 + AH +DQ+ET R Q++ + G+ GL + T + + + RP L + Sbjct: 128 IVAHNLNDQIETFLQRLQQNSSIFGLVGLRTVDHLPISPTSPSENGDSIHVVRPLLSFDK 187 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 +I + I W ED +N+D R +R V ++ H L QD+ ++ NA Sbjct: 188 SEIIETCTKNGIRWFEDHTNSDIHLTRRNLLRHIVSEVVPHRL-----DNQDIPIEECNA 242 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISL 281 ++++ + L I+++ ++ + + + +L LR ++ +SL Sbjct: 243 LSLVSKESLVKTHNEILSLVCEMQHQIANIENHLKLRGLFSLDKKNLSL 291 >gi|300704459|ref|YP_003746062.1| tRNA(ile)-lysidine synthase [Ralstonia solanacearum CFBP2957] gi|299072123|emb|CBJ43455.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CFBP2957] Length = 462 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 148/391 (37%), Gaps = 16/391 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS LL A + D + ++ A+ V H L+ Sbjct: 11 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHA-TAAWRDAAGAPVRLVALHVHHGLQAD 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + V S G+ AAREARYA + ATL++T Sbjct: 69 ADAWEAACVRMAAAVDVECHVRRVHVSVDAGRGVEEAAREARYAALDALCAETGATLLLT 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M + RP+L R DI +++ Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPMERL----GGATLLRPWLDVPRSDIEAYVRTH 184 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++W +DPSN D R+ R +R + + H A + + + + + L Sbjct: 185 ALAWVDDPSNDDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 244 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301 + D+ + LR A G + + +L ++ C Sbjct: 245 ARIAPAGTLALADLAALSGPRQRAALRAWLAGAGLRAVSSRRLEDLRAQLLTARTDSALC 304 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 V + + R WI V P P + + R+ + + Sbjct: 305 VRLPGAQVRRYRGQAWI--EVAGQPE--CEPADCLITVSRFNLAQPEVQRVDVAEWGGAL 360 Query: 362 ADVPSGIPPIIAQ--RALSSMPSKEGGKPLL 390 P+ I A+ RA S+ ++ GG+ ++ Sbjct: 361 LFSPAQADGIDARILRARLSLTARRGGERIV 391 >gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2] gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2] Length = 368 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 138/332 (41%), Gaps = 21/332 (6%) Query: 4 SPIE--SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 SPIE ++ IL+AVSGG DS LL + R+ G A +VDH Sbjct: 12 SPIEDGALDALFAPFTPHPRILIAVSGGPDSTALLYLAARWRAGRASGP-DLIAATVDHG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR A E V + L + H ++ W+ +KP G+ AAREARY L+++ A+ AT Sbjct: 71 LRAEAAAEAEAVGAFATFLGVPHRILIWQGAKPTHGIQEAAREARYDLLADAAREAGATA 130 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AHT DDQ ETV R R GLSGM D L + RP L + + + L Sbjct: 131 IALAHTRDDQAETVLFRLARGSGL--SGLSGMRGDAARD-GLALLRPLLDVPKARLVATL 187 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-------- 233 ++++ DPSN+D RF R R+R + L + R+ + Sbjct: 188 EAASVAFVRDPSNSDPRFARPRLRAMAPTLAGEGLDARRLAVLARRIARADQALEAATDA 247 Query: 234 -VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A +I H ++ + + + LL + G + + +E + Sbjct: 248 AEAAVIRLGAEEHPGAVSLDVRAFAALPDEIALRLLGRAIQKVGTEGPV-ELAKLEALYE 306 Query: 293 FLKSGKR-----GCVSIGRVVIDRRANFLWIT 319 LK+ ++ ++ R L ++ Sbjct: 307 ALKAAAHVPSGPFRRTLAGALVSLRGAALRVS 338 >gi|255994856|ref|ZP_05427991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium saphenum ATCC 49989] gi|255993569|gb|EEU03658.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Eubacterium saphenum ATCC 49989] Length = 351 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 23/250 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78 ++V +SGG DS+ LL L+ + A+ +DH LR + + + C Sbjct: 22 DKVVVGLSGGPDSVALLHCLNEL-------GYDCIAVHIDHSLRGCESDGDAEFARTFCH 74 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA----KTINATLIMTAHTFDD 130 I + + + G+ AAR RY + + A I A +D Sbjct: 75 DRDIPFKMFKFDCKRYAKEEALGVEEAARNKRYEVFAAVADGFIAQGKNVCIAVAQNQND 134 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+ET+ MR R +G L G+ I RP L REDI +FL + NI + Sbjct: 135 QVETLIMRLIRGTGIEG--LCGIDVKRKSRTGASIVRPILNKSREDIMAFLEEENIPYRL 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 D SN++ + R RVR + ID + K + LR+ N L K LT Sbjct: 193 DSSNSEPDYFRNRVRLALARIDESKPFGDEIDSKFIEKSILRLCENAKADALFLKELTDA 252 Query: 246 MRSIIAISQD 255 AI Sbjct: 253 AYEKAAIEDS 262 >gi|91792927|ref|YP_562578.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella denitrificans OS217] gi|91714929|gb|ABE54855.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella denitrificans OS217] Length = 476 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A +++A SGG DS L L L + +I + V H L A + + Sbjct: 27 AKLVLAYSGGVDSEVLAAGLS--LFSQFHPEIDCRLLHVHHGLSAHADSWTEHCRKRAAF 84 Query: 80 LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V K + L A AR ARY I++H +++TAH DDQLET+ + Sbjct: 85 YGLPLIVEKVSVQKGKRESLEAKARAARYHAIAQHL--HQNDILLTAHHEDDQLETLLLA 142 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 +R KG+ G C + W+ RP L R+ I + + ED SN DD Sbjct: 143 LKRGQGPKGLAAMGECQ---RKDHYWLLRPLLSVSRQQIEALAASEALVHIEDDSNQDDS 199 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 F+R +R + + AL + + + A + Sbjct: 200 FDRNFLRLEI----IPALKRRWPSYAQTASRSARLCAEQQAAIEEEAASRL 246 >gi|15606915|ref|NP_214296.1| cell cycle protein MesJ [Aquifex aeolicus VF5] gi|6016543|sp|O67728|TILS_AQUAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|66360363|pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase gi|66360364|pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase gi|160285466|pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285467|pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285468|pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285469|pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From Aquifex Aeolicus. gi|160285496|pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|160285498|pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|160285499|pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine gi|2984151|gb|AAC07685.1| cell cycle protein MesJ [Aquifex aeolicus VF5] Length = 317 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 34/315 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A SGG DS+ L L + + S ++ +H LRE+A+ + + + Sbjct: 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVAL--AHFNHMLRESAERDEEFCKEFAKE 82 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V V + + L A R RY + E ++ I TAH +D LET Sbjct: 83 RNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETS 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL G+ + + I RP +R +I + + + W ED +N Sbjct: 143 LLFFTR-----GTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNY 195 Query: 196 DDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R R+R V +L +LKM K + R + L + + Sbjct: 196 EVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLD 255 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RV 307 + + + L L ++R Y +E V L+ G G V++G Sbjct: 256 VKKLKEKPL----ALQRRVIRKFIGEK-------DYEKVELVRSLLEKG--GEVNLGKGK 302 Query: 308 VIDRRANFLWITRAV 322 V+ R+ +L + V Sbjct: 303 VLKRKERWLCFSPEV 317 >gi|46446273|ref|YP_007638.1| hypothetical protein pc0639 [Candidatus Protochlamydia amoebophila UWE25] gi|61216530|sp|Q6MDI6|TILS_PARUW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46399914|emb|CAF23363.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 458 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 23/356 (6%) Query: 3 LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ I V+ F++ +L+A+SGG+DS+ L L L+ R G + F VDH Sbjct: 11 LNVINQVKRFIKKYCKSTQPLLLALSGGADSLSLFYCL---LACRLEGILSFHVAHVDHG 67 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE + E + ++ + ++ + + S+ L A R+ R E N Sbjct: 68 WREESAKEATILKNLAEQHQVPYHQLKIDLSQLAGNLEDACRKQRQKFFKEICLQNNLQA 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + H +DQ+ETV R G+ + + +D + RP L ++++I +FL Sbjct: 128 VCLGHQENDQVETVLKRILEGSHW--SHFDGLKERMWHD-QVQFLRPLLGIQKDEILAFL 184 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNA 233 + ED +N D+RF R R+RR + + K+ +L+ Sbjct: 185 KGNQLKAFEDGTNCDERFMRARMRRTIIPDLNRSFGKKIDNSLVYIASEMSELKNFFLGR 244 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER---V 290 V+ L+ + + + ++ +ID + YLLR+ I ++ + ++R Sbjct: 245 VSPLLGQIVKGPFGVYLNLANHP-SIDLVEIKYLLRL---ISEQELFFLSRQILQRASEA 300 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346 + L+ + ++VIDR F+ + P L + + + G++ + Sbjct: 301 IEKLEPQLSFEMGTKKIVIDRGHFFILSKKTACKNPNLQIS-GSSLQYYGKWMIKT 355 >gi|322392415|ref|ZP_08065875.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780] gi|321144407|gb|EFX39808.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780] Length = 425 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 24/265 (9%) Query: 7 ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E + F+ + + +++A+SGG DSM L L + + I+ V+H R Sbjct: 5 EFLNHFLEKGYFKHHSRVVLALSGGLDSMFLFHLLSTYQKELG---IELFLAHVNHKQRP 61 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +E + + ++ + V + A AR+ RY + + + AT ++T Sbjct: 62 ESDNEEYELRKLAEQVGVPIYVAHFTGDFS----EANARQFRYEFLKKVMRQTVATALVT 117 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ET++MR R + LS + + +D + RP L ++D Sbjct: 118 AHHADDQAETIFMRLIRG--VRLQHLSAIKERQEFDKG-ELIRPLLSFYKKDFPE----- 169 Query: 185 NISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I ED +N ++ + R RVR ++ ++ + +K + F +L +V++ +L T Sbjct: 170 -IEHFEDATNKENSYFRNRVRNIYLPQLEKENIQVK-RAFLELGKEVSDYQIVLSEFSKT 227 Query: 244 VHMRSIIAISQDILNIDSTLLFYLL 268 V + + L+ LL Sbjct: 228 VDVEDLT----QFLSFSEATQRVLL 248 >gi|139439222|ref|ZP_01772664.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC 25986] gi|133775246|gb|EBA39066.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC 25986] Length = 512 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 30/307 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETA 66 R+ A +++ VSGG+DS LL+ + R I + + V+H LR A Sbjct: 21 RTRQQAAPVVLMVSGGADSTALLLMACTSKLDIQDGRGVAPIARERLHVLHVNHHLRGKA 80 Query: 67 KD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL---- 121 D + +V ++C++ + V + AAARE RYA + + + A Sbjct: 81 SDGDEAFVRELCAQYGLPLCVEHAYFDGESGNIEAAAREVRYAAARRYVRELCAQTGAPR 140 Query: 122 ----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I TAHT D+ ET M + + G+ +I N+ + RP L ++ Sbjct: 141 TAARICTAHTSSDRAETFLMNAIKGSGPAGL------SSIPRRRNI-VVRPLLDLTHGEL 193 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKV 230 +L W ED SN D + R VR V + + + D + Sbjct: 194 VGYLQVHGQPWREDESNEDISYLRNYVRHRVMPVVAQRNASVCKTIGAACEILGDEDAFL 253 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + A L + + L ++ + A + P R +ERV Sbjct: 254 SQLSAQAFRSCLRKEAAGALVLDARRLAAAEVVIARRIVRLAIKRIDPGARPEMRHVERV 313 Query: 291 MLFLKSG 297 + + G Sbjct: 314 LSCVAEG 320 >gi|312796646|ref|YP_004029568.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI 454] gi|312168421|emb|CBW75424.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI 454] Length = 476 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 81/364 (22%), Positives = 131/364 (35%), Gaps = 44/364 (12%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +V +L A + +A SGG DS LL A VL R + A+ V H L A Sbjct: 16 AVAAQATALHRDASVAIAFSGGIDSTVLLHAATRVLGAR-----RCVALHVHHGLSPHAD 70 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +DV RL +A + ++ PQ + A AR+ARYA + + ++ H Sbjct: 71 AWRSHCADVACRLDVAFDCRAVAITRTPQHSVEALARDARYAALEQMCAAHRVRVLWLGH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ETV ++ R G+ + + L RP L R + ++ Q + Sbjct: 131 HADDQAETVLLQLLRGAGLPGLAAMPLHRVLP--NGLIHVRPLLPVLRASLDAYARQHTL 188 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD----------LRVKVNNAVAM 236 W ED SN D R+ R VRR V + L + ++D ++ +AM Sbjct: 189 RWIEDESNADLRYARNAVRRHV----MPTLAVHFPGYRDALARTARHAAAAQRLLEDLAM 244 Query: 237 LIPKYLTVHMRSIIAISQD--------------ILNIDSTLLFYLLRVSAAICG-GQISL 281 + + T R A+ + ++ + LLR G +S Sbjct: 245 IDLRACTFASRRAAAMKRSDAPVPVGPMLSRCALVELSHERAVNLLRFWMREAGLATVSA 304 Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA-------VRNLPTLILYPEE 334 + R + + + N +W R P+ L Sbjct: 305 ARVEEILRQLREAGDDAALRIEHDEHCLRLYRNRVWWERQDDGAASHDAMPPSTELRWSG 364 Query: 335 TTVW 338 +VW Sbjct: 365 QSVW 368 >gi|190575333|ref|YP_001973178.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a] gi|190013255|emb|CAQ46889.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a] Length = 442 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 73/354 (20%), Positives = 121/354 (34%), Gaps = 16/354 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +V F + A +LV SGG DS LL L A+ V H L+ Sbjct: 12 LATVTAFPALVPLDAPLLVGYSGGVDSTVLLHWLWRCAQTSGTA---LRAVHVHHGLQPD 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A D V + C I +V + + TGL + + A+ + A Sbjct: 69 ADDWVLHCQQQCDAWGIELAVHRVQV-ENGTGLGTEGAARQARRAAFAAELREGETLALA 127 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET +R+ R G+ + + RP L R + + Q Sbjct: 128 QHQDDQAETFLLRALRASGVDGLAAMSTHSRL---GEHPLWRPLLAVPRSALLDYARQHA 184 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + W EDPSN +D +R +R V + +L + + Sbjct: 185 LRWIEDPSNAEDHADRNFLRLQVLPLLRQRWPHAAAALAGSATHCRQTRELLDEEDAELI 244 Query: 246 MRSIIAISQDILNIDSTL-LFYLLRVSAAICGGQISLPGYRSMER----VMLFLKSGKRG 300 +A L + + RV A G + P S+ + +L + ++ Sbjct: 245 AHLEVAPRVLSLELLRQMSPRRAARVLRAWVLGHDAAPLPASVLQQALEELLPADTDRQA 304 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 V + VI + + ++ A LP+L L + WDGR + + Sbjct: 305 RVRWQQHVIQQWRDHAYLLPAR--LPSLPL--DWQAEWDGRAPLPLPDGGQLSL 354 >gi|81429211|ref|YP_396212.1| ATPase [Lactobacillus sakei subsp. sakei 23K] gi|78610854|emb|CAI55906.1| Putative ATPase of the PP-loop superfamily, cell cycle protein [Lactobacillus sakei subsp. sakei 23K] Length = 459 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 7/243 (2%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A ++VA S G DSM LL L + + K + V+H LR + E Y+ Sbjct: 17 PTGAKVIVATSTGVDSMVLLTLLQRLPTAL---KPQLIVAHVNHELRTESVAEEAYLRQF 73 Query: 77 CSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C ++ V W PQTG+ AAARE RY A ++TAH DDQLET+ Sbjct: 74 CLENDLSLQVAHWPLQQHPQTGIEAAAREFRYQFFEHLMTAEKADYLVTAHHGDDQLETL 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M+ R M G+ + + + RP L ++D+R + L NI+ ED +N Sbjct: 134 MMKFIRSGELHEM--RGIQSQRPFA-DGTLIRPLLPFAKQDLRDYALANNITSFEDQTNY 190 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 + R RVR + ++ ++ + T+ + ++ Sbjct: 191 ETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQLTALLGQQAQLATTLLPLLDLKVTDK 250 Query: 256 ILN 258 +++ Sbjct: 251 VIS 253 >gi|168183607|ref|ZP_02618271.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf] gi|237796988|ref|YP_002864540.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657] gi|182673269|gb|EDT85230.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf] gi|229260540|gb|ACQ51573.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657] Length = 468 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 24/275 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + + +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKDQLRIKDIYVAHINHGVRGAESNADEKYVENFC 75 Query: 78 --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L ++ + G+ +A REARY + K + A I TAH +DQ E Sbjct: 76 YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ +L+I RP + REDI ++ + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDRYELNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245 N + R ++R +++D + + +F ++ K NN + + +Y T Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 ++ II + L ++ +LR + + Sbjct: 250 LQRIIIDKRAFLE-HESISTRILREAILYINQNLY 283 >gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15] gi|259533717|sp|B1YGQ4|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15] Length = 414 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 18/260 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +LVAVSGG DSM L L+ + V H LR+ + +E V Sbjct: 7 LPKEPLLVAVSGGCDSMVLAHLLYE-------ANHDLMIVHVHHGLRKESDEEAEAVRAW 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R+ + + + Q AA R RYA E ++ AH DDQLET+ Sbjct: 60 AEARRVGIRMTRLE-WEGQAPSQAACRTRRYAFFQEVMAETGRRHLVLAHHRDDQLETLL 118 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 ++ R G+ G+ + I RP L ++ + + R + W ED +N Sbjct: 119 IQLIRGE----AGVDGIPRIRSFATG-QIHRPLLPYSKQQLYDYAKARQVVWHEDETNAG 173 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ++ R ++R + + L L ++ V KY+T +++ + Sbjct: 174 TKYLRNQMRHRLLPL-LAELRPGYEEATVQAAMVRYEQKQEHLKYVTSYVKEQMTDRGLP 232 Query: 257 LN----IDSTLLFYLLRVSA 272 L + + +LR Sbjct: 233 LEAIQKLPTDFRRLVLRALL 252 >gi|257058096|ref|YP_003135984.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802] gi|256588262|gb|ACU99148.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802] Length = 326 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 23/314 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73 L IL+A+SGG DS+ L L + S + K + DH + DE +V Sbjct: 19 LPKGQRILIAISGGQDSVCLGKLLLDLQSKWGW---KIAIGHCDHRW---SYDEGIADHV 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I + N K AAAR+ RY + E A+ + T ++T HT D+ E Sbjct: 73 EKLAQNWGIPFYLKVANNLKET---EAAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R G LS + N+ + RP L R + +F Q ++ ED + Sbjct: 130 TLLYNLIRGAGTDG--LSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLPIWEDAA 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N + ++ R R+R+ + +++ +V A + + + I Sbjct: 188 NENLKYSRNRIRQQLIPYLQTQFNPQVETNLAQTAEVLRAEVEYLETSAKMVLEQAINED 247 Query: 254 QDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--G 305 Q LN + L ++R + P + +E + + + +R S G Sbjct: 248 QTQLNRLILQSVPLALQRRVMRKFLQKISQRE--PNFEQIEALTQLIDAPRRSRTSSLPG 305 Query: 306 RVVIDRRANFLWIT 319 + + +++ ++ Sbjct: 306 NFSAEVQGDWIILS 319 >gi|307297688|ref|ZP_07577494.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916948|gb|EFN47330.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 463 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 28/332 (8%) Query: 6 IESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E +RF + ILVAVSGG DSM LL L+++ S KI+ A +++H LR Sbjct: 6 LEVLRFVKEWDLVREGQRILVAVSGGKDSMALLNVLNNLKSTL---KIELFAANLNHGLR 62 Query: 64 ETA-KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 E ++E R + C I V + +K + +AARE RY + + I Sbjct: 63 EEGPQEEARMIEQFCEDRFIDFFHEKRDVREYMRTKKGESIESAAREVRYGFLRDVKSMI 122 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I H DD +E +R + KG+ L N + RP L + I Sbjct: 123 GADRIALGHNRDDLVENTLLRLVKGTGMKGV-------IGLRPSNGDLIRPLLFSDMQRI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 ++ +++ ED +N +D FER +R R + A++ + D + Sbjct: 176 IDYVTINKVTFMEDETNAEDGFERNFLRLRVIPELRKINPALNKAIWRFFENIYDGYSLI 235 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMER 289 ++ V L+ ++ +S ++ I+ L+ L+R ++ P R++ Sbjct: 236 DSRVETLMSRFGKADGIYFAKLS-ELREIEKPLILELVRKIVSMMSFDNYPPSRQRALAF 294 Query: 290 VMLFLKSGKRGCVSIGRVVID-RRANFLWITR 320 LF K R V + R +++ R Sbjct: 295 FDLFSKDEGRWTVEFKENLKASRIGKYVFFYR 326 >gi|228473589|ref|ZP_04058341.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624] gi|228274961|gb|EEK13771.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624] Length = 414 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 64/299 (21%), Positives = 108/299 (36%), Gaps = 30/299 (10%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA 83 A+SGG DS+ L LH + I F + LR E ++ + +V + L + Sbjct: 2 AISGGVDSVVLAHLLHEL-------GISFLMAHCNFQLRGEESEGDQHFVETLAKELSVP 54 Query: 84 HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ ++ AAR RY + I+TAH +D ET + + Sbjct: 55 IAIKRFETKTYGKAHGLNTQLAARVLRYEWFEALRQEQGYDYILTAHQANDSWETFLINT 114 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R KG+ + N + RP L RE+I +F +R I W ED SN D + Sbjct: 115 SRGSGLKGL-------LGIPAENAHVLRPLLPFSREEILAFAQERGICWREDSSNGSDAY 167 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQ 254 R ++R + I K F+ + + + L I Sbjct: 168 TRNKIRHHLSPILKEIHPNFFKNFEKTQNLLQLSYDFLQESVAQYRKEWFIMGQPIVFEV 227 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + L F L + + G + +ER L +G++ R++ +R Sbjct: 228 EKLRDHPHRRFLLYELLSPYGFGDTEI-----LER-FLRASTGRQLSSDTHRLLSNRGQ 280 >gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana] Length = 614 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 125/302 (41%), Gaps = 28/302 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKDEVRYVSD 75 + VSGG DSM L + ++ ++ G I AI VDH LR+ +KDE V Sbjct: 58 ALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELVCS 117 Query: 76 VCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 S++ I + S W + +P+ G L AARE RY +IS +++ AH DDQ Sbjct: 118 RVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQA 177 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRSFL 181 E +R R G+ + I + + ++ + RP L +ED+ Sbjct: 178 ELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKIC 237 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAML 237 W EDP+N F R R+R + +++ L + + + R V+ L Sbjct: 238 QWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCTDL 297 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVMLFL 294 I + +TV + + + LN L + A+ + + + ++ ++ Sbjct: 298 IHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLNYI 357 Query: 295 KS 296 ++ Sbjct: 358 RA 359 >gi|298488349|ref|ZP_07006381.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157171|gb|EFH98259.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 445 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 101/309 (32%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + S AI V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V P + AAR+ARY ++ +++T DDQ ET+ R R Sbjct: 88 FELVRVHV-DPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M + + RP L R ++ + Q + W EDPSN D RF R Sbjct: 145 GVRG--LAAMPGQRILGRG-HLVRPLLAVSRVELEGYAHQHGLHWVEDPSNDDSRFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260 +R V + + A +L + + L + Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261 Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LR A + E + R + + R Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320 Query: 313 ANFLWITRA 321 +W A Sbjct: 321 QGCIWWVPA 329 >gi|312869847|ref|ZP_07729988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3] gi|311094626|gb|EFQ52929.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3] Length = 457 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 164/404 (40%), Gaps = 28/404 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 F ++ RFF ++ +++AVS G DSM LL + S+ + + V+H Sbjct: 8 QFKRHLQRGRFFDKN----DRVVIAVSTGVDSMALLSLVTSLPASLRPA---ITVAHVNH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119 LR +++E Y+ C + ++A V W + + PQTG+ AAAR RY +E + Sbjct: 61 ELRRQSQEEEAYLRRYCQKHQLALLVKHWPRANHPQTGIEAAARRFRYQFFAEVMAARES 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++TAH +D ET+ M+ R L G+ + + RP L +E +R+ Sbjct: 121 PILLTAHHQNDLAETMLMKLVRGGQL--SQLVGIEAVRSFA-GGRLVRPLLPFSKEQLRA 177 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + + + + W ED +N D R R R + ++ ++ +A Sbjct: 178 YAVAKGVRWYEDATNQDLTISRNRYRYQLLPALEKENPRLLQHLTSYHQQLAALLAWQNQ 237 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSG 297 + R +A + L + + + LP + ++ +M LK+ Sbjct: 238 EVQAQLAR--VAEGNQLHLTSWEELPEVAQRLVLQHWLEQRLPAIKQQLVDELMAGLKNH 295 Query: 298 KRGCVSIG-----RVVIDRRANFLWIT-----RAVRNLPTLILYPEETTVWDGRYQFQNL 347 S ++V D ++ L T + L T++ + V D R + + Sbjct: 296 VAPQQSWALPNGYQLVKDYQSCRLVPTQKNHGKGQNGLSTVVELGQWYRVSDQRA-IRVI 354 Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQ--RALSSMPSKEGGKPL 389 + +G S ++ + P+ + RA ++ K+GG L Sbjct: 355 AAKDDTVGQSSGQEMWLAPDQLPLRLRLWRAGDALRLKQGGHQL 398 >gi|120602664|ref|YP_967064.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4] gi|120562893|gb|ABM28637.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4] Length = 390 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 125/325 (38%), Gaps = 36/325 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H +VA+SGG+DS LL+ LH + R + SA+ VDH LR + E R C L Sbjct: 64 HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V + + + G A R+ARY L++ + A I T H D E V Sbjct: 121 GIPLAVHTLAVDELAAVWRVGTEEAGRKARYDLLAAALPSAAADWICTGHHLGDLAEDVL 180 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G +CD I RP L ++ + +FL +SW EDPSN Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTGKDRLEAFLATLGVSWTEDPSNAS 235 Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKV---------NNAV 234 D + R R+R V + DL L F + R ++A Sbjct: 236 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLNAAPAPPSHAE 295 Query: 235 AMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292 + H I + + L + L + G GQ +++ + Sbjct: 296 GEASAPHDGAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 355 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317 + G R + + RR + ++ Sbjct: 356 AGRGGTRFMFAGCKTATVRRGDIIF 380 >gi|123430775|ref|XP_001307953.1| PP-loop family protein [Trichomonas vaginalis G3] gi|121889608|gb|EAX95023.1| PP-loop family protein [Trichomonas vaginalis G3] Length = 444 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 118/305 (38%), Gaps = 21/305 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + VSGG+DSM L + D + + ++H +RETAK + +V C I Sbjct: 23 LGVSGGADSMYLFYNFMDLKEDWN---LDIIVCHLNHGIRETAKRDEEFVKKSCQAYGIK 79 Query: 84 HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + + A R RY + I+TAH +D++ETV Sbjct: 80 FISKTVNMDEFAREKKFSSEEAGRILRYEFFR---ENSQGRKILTAHNANDRVETVLFNI 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R KG LSG+ +N I RP + +RE+I +L + + + +D +N ++ + Sbjct: 137 MRGTGLKG--LSGIT-----HVNGDIYRPLINIKREEIEDYLHKNKLQYFDDETNFEEIY 189 Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R ++R + + + + D + N + ++ + + I +I Sbjct: 190 TRNKIRLGLIPELKKFNPYIINSLLRLSDNVEEANEFIGEILEENYNNCLGDNFLIPSEI 249 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANF 315 + + + +++ ++ ++ + + +G+ + R + Sbjct: 250 IKLKKLIAQEVIKKYLEENFYSENILNRFNILAIYDLCLGDSGRRIDLGKNISARRSYDK 309 Query: 316 LWITR 320 ++I Sbjct: 310 IYIEE 314 >gi|119493467|ref|ZP_01624136.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106] gi|119452711|gb|EAW33890.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106] Length = 338 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 116/323 (35%), Gaps = 27/323 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +LVAVSGG DSM L+ L + + + DH R + Y+ Sbjct: 24 LPSKQRLLVAVSGGQDSMSLIKLLLDLQPKWGW---DLAIAHCDHRWRSDSGANADYIEQ 80 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +++ + ++ A AR RY ++SE A T N ++T HT D+ ET+ Sbjct: 81 LADSWQLSFY---RQTAQKIPKTEADARHWRYQVLSEIALTHNYDYVVTGHTKSDRAETL 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTI-------LYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 R G+ I + N+ + RP L R F + + Sbjct: 138 LYNLIRGSGSDGLQALAWKRPIDIEANVNHTNHNIGLVRPMLEILRSQTGQFCQDQQLKI 197 Query: 189 CEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 ED +N D + R R+R + HAL + Q + L + Sbjct: 198 WEDSTNEDLSYARNRIRTELIPYLQTHFNPQTEHALAQTAELLQAEVDYLEQTTEQLYQQ 257 Query: 241 YLTVHMRSI-IAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 ++ S + I++ IL L ++R + P + +E++ + + Sbjct: 258 AISTEPDSTGLKINRLILRQAPLALQRRVMRRWLQQI--LPTSPSFEQIEKLTALICAPN 315 Query: 299 RGCV--SIGRVVIDRRANFLWIT 319 R G + ++ I+ Sbjct: 316 RSQTDPFPGGAIAKVDQQWIKIS 338 >gi|322375226|ref|ZP_08049740.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300] gi|321280726|gb|EFX57765.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300] Length = 425 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 22/262 (8%) Query: 9 VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + F+R + +++A+SGG DSM L L + + I+ V+H R + Sbjct: 7 LNHFLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQKELG---IELIVAHVNHKQRSES 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E + + + + S+ A ARE RY + K + AT ++TAH Sbjct: 64 DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D ++ I RP L ++D I Sbjct: 120 HADDQVETILMRLIRGSRLR--HLTGIKESQVVD-DIEIIRPLLPFHKKDFPP------I 170 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED +N ++ + R R+R L L + + + + + ++ + Sbjct: 171 FHFEDQTNQENTYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQATITELSK 226 Query: 247 RSIIAISQDILNIDSTLLFYLL 268 + + ++ + LL Sbjct: 227 QIDVEDLNELFSYSQQTQGVLL 248 >gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC 23769] gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC 23769] Length = 440 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 70/382 (18%), Positives = 127/382 (33%), Gaps = 33/382 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +AVSGG+DS+ L + + VDH LR + DE + + Sbjct: 40 PVAIAVSGGADSLALALLTRRWRRA-------VVGLVVDHGLRAESADEAARTVRCLAEM 92 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ + + AR RY + + + ++ H DDQ ETV MR + Sbjct: 93 DIPARLLRLRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQAETVMMRQR 152 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ + ++ RP L + D+ + L I W EDPSNTD R E Sbjct: 153 ASSGPDGLAAMAQA---VAGTDVRFVRPLLGVCKADLYATLRHAGIDWVEDPSNTDLRTE 209 Query: 201 RVRVRRFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R R R + ++ R+ + A + + + + + + Sbjct: 210 RARARHALSTDAQLRRVCLQTAQQAGGRRMARDAQDAQWLAAHARFDAGGWVGLPR--ML 267 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 +L L+R G P + + ++ ++G + + Sbjct: 268 PPERVLSALVR----TVSGHEYPPSPGGVAALCAVPRAA-----TLGGACLLAHGGEWLL 318 Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ--------IGPQSYRKADVPSGI-P 369 R + + WDGR+ + +G P Sbjct: 319 AREEAAM-QGHVRARAGICWDGRFVLHVDGVADGAVPALSDLYVGAAGAVATWWPRERGR 377 Query: 370 PIIAQRALSSMPSKEGGKPLLA 391 P R L ++P+ G ++A Sbjct: 378 PPFPARVLRTLPALHRGGRVVA 399 >gi|218134795|ref|ZP_03463599.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC 43243] gi|217990180|gb|EEC56191.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC 43243] Length = 522 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 73/362 (20%), Positives = 127/362 (35%), Gaps = 43/362 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 ++V +SGG+DS+ LL+ L S+ +F + A+ V+H +R E A + + +C RL Sbjct: 27 VVVGLSGGADSVSLLMVLGSLKERMAF---ELRALHVNHGIRGEEAMHDELFTKALCDRL 83 Query: 81 RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATL--------------- 121 I V + A R AR + I Sbjct: 84 GIRLKTVHIDVPALVQETHMSSEEAGRHARQDEFARLCAEIEKEKTVDRESGQIPGQTGR 143 Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCR 173 + AH DDQ ETV R A KG+ + + I RP L R Sbjct: 144 RVVVALAHHMDDQAETVLHNLVRGSALKGLAGMSPVNVMYGTCDGVRTGYTIIRPLLCVR 203 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQD 225 R I +L N +C D +N + + R R+R + + + + ++ Sbjct: 204 RAAIEEWLRGHNQEYCTDSTNLGNDYTRNRLRNTIIPMLNDMVNANAVSNIASAAAFAKE 263 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + +N + V R + + + D + Y++ ++ A Sbjct: 264 AQDYINRQAEAAFAQCADVRERETVIDAVRLSQYDRIIRKYVVHMAIASEAKAAKDICAV 323 Query: 286 SMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344 +E V +++G V I + RR + + I +A DGR+ Sbjct: 324 HVESVEALIEAGTGSSVDIPYGLKARRRYSEIVIQKAD---MKCDGQNGGVDEHDGRWYS 380 Query: 345 QN 346 +N Sbjct: 381 KN 382 >gi|312865835|ref|ZP_07726057.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415] gi|311098710|gb|EFQ56932.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415] Length = 420 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 112/298 (37%), Gaps = 26/298 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I+ +F + +LVAVS G DSM LL+ L + D + I+ V+H Sbjct: 5 LEDIQKKAYFAKH----DKVLVAVSAGVDSMNLLLFLQAHQEDLA---IEIGLAHVNHKQ 57 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R+ + E Y+ D + + + + + AR+ RY + + T + Sbjct: 58 RQQSDLEETYLRDWAEDHGLPFYLAHFTGNFSEKS----ARDFRYNFFKKVMEKEGYTTL 113 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH DDQ ET++MR R + L+G+ + I RPFL R+E++ Sbjct: 114 VTAHHADDQTETIFMRILRGSRLR--HLAGIKAVQEFGPG-QIIRPFLNIRKEELPE--- 167 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + ED SN D + R R+R L L + K ++ V L Sbjct: 168 ---VFHFEDASNQSDAYLRNRIRHH----YLPELAKENPKISTAIRELGTEVQTLFAALA 220 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + Q + YLL + + ++ ++ K G Sbjct: 221 DLTANLDGTDLQVFHKQSPAVQVYLL--QDYLEAYPDLSLSRAQFDSLLESIRKAKSG 276 >gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5] gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5] Length = 390 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 151/379 (39%), Gaps = 38/379 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V VSGG+DSM L + S +R + A DH LR + DE + L Sbjct: 13 RVAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPESADEASLTGRRLAAL 69 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + ++ + P L A AR+AR+A ++ A+ ++ H DQ E MR+ Sbjct: 70 GIGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAA 128 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GL+GM D ++ I RP L +R FL R I W EDPSN D RFE Sbjct: 129 RGP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFE 183 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 RVRVR R L L D R VA + + +++ + L ++ Sbjct: 184 RVRVRATRRQAALVPPSLD----ADRRAAAERDVAETLARNVSLRPEGWAIVRAASLPVE 239 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI---DRRANFLW 317 + L V + GG P ++ER+ L+ ++G V I R Sbjct: 240 A------LAVLFRVLGGAAYPPARAALERLTPALRPA-----TLGGVRIMAAGRHGPGWL 288 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQ----------FQNLSDSLIQIGPQSYRKADVPSG 367 + R + VWDGR++ L DS +IG +S + Sbjct: 289 LVREAAAC-APPVAAVRGAVWDGRFRVCDVPPGARTIGALGDSAAEIGRRSGLPGALRRT 347 Query: 368 IPPIIAQRALSSMPSKEGG 386 +P + S+P GG Sbjct: 348 LPAFFGGDGVLSVPHLAGG 366 >gi|325479551|gb|EGC82647.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii ACS-065-V-Col13] Length = 454 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 116/310 (37%), Gaps = 23/310 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+V SGG DS L+ AL+ + ++ F +H R+ A ++ V + +L Sbjct: 23 IIVGASGGPDSQFLVYALNELKNELKF---DIILAHFNHLHRKEAIEDEMLVKETAEKLS 79 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + S + A R RY K N I AHT DDQ ETV M Sbjct: 80 LRFITKSQSMDQFAKDMKISPEDAGRRLRYEFFRSIEKDKN-PKIAVAHTMDDQAETVLM 138 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R G+ + N I RP L +++D+ +L I++ D +N + Sbjct: 139 RIIRGTGVNGL-------VAMTYKNDDIIRPILDIKKQDLLDYLATNGINYHIDKTNNET 191 Query: 198 RFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + R ++R + +L D ++ + L L + Sbjct: 192 DYTRNKIRLDIIPQIEKINPNFKKSLVNLSHIAADETGIIDRYIEDLYADVLLESGEDFV 251 Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 +I+Q + +D++L LLR + G++ ++E + + + G + + Sbjct: 252 SINQKSFDKLDNSLRRKLLRRAILDIKGEVKDISKENIETFLEIINLDNGKTIIKGDLTL 311 Query: 310 DRRANFLWIT 319 + N + Sbjct: 312 TKSYNQYRLY 321 >gi|291279418|ref|YP_003496253.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1] gi|290754120|dbj|BAI80497.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1] Length = 419 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 19/269 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVD 59 M + E + F + ++VA SGG DS L LH ++ ++ I A ++ Sbjct: 1 MMNTLYEKILFKECNAYKNKKLIVAFSGGKDS---LSILHFLVKNKDLLSISDIIACHIN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115 H +R + D+ ++ + C +L + K + + AAR RY + + Sbjct: 58 HQIRPDSDDDEKFAKEFCDKLNVKIYTYKIDVFDYVKKYKVSIEEAARILRYKKLYDLLN 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I I+TAH DD +E ++R R + + D + I RP L RE Sbjct: 118 DIKYDFIVTAHHKDDLIENFFIRVFRGTPIYNLSGFNINDDV-------IKRPLLNINRE 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 I ++ + + D SN D+++ R VR + + + K F + +++ + Sbjct: 171 CIEEYIDYYQLPFVVDKSNFDEKYLRNWVRNKI----VKEIKSYNKGFLNNIIRLIDESK 226 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 L + + +D + L Sbjct: 227 ELSDYLKRKCFVEVNELKEDFIYFSKDRL 255 >gi|28199394|ref|NP_779708.1| cell cycle protein [Xylella fastidiosa Temecula1] gi|61217346|sp|Q87BE2|TILS_XYLFT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28057500|gb|AAO29357.1| cell cycle protein [Xylella fastidiosa Temecula1] Length = 437 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R +LVA SGG DS LL L S + R G AI + H L E A Sbjct: 7 FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 63 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + C++ I + S + AA H + AH DDQ Sbjct: 64 HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R + GL+ M + + RP L R + + Q+++ W ED Sbjct: 123 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250 SN D R +R +R V + LH + + + A A L+ V + ++ Sbjct: 179 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 237 Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305 A+ + L L + G LP +ER +L + C + Sbjct: 238 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 297 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R L++ R P+ +W G + + + Sbjct: 298 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 352 Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389 + A+R +P + PL Sbjct: 353 PHPLRVRARRGGERLILPGRTHSHPL 378 >gi|160285497|pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex With Atp, Magnesium Ion, And L-Lysine Length = 315 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 122/313 (38%), Gaps = 34/313 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A SGG DS+ L L + + S ++ +H LRE+A+ + + + Sbjct: 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVAL--AHFNHMLRESAERDEEFCKEFAKE 82 Query: 80 LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + V V + + L A R RY + E ++ I TAH +D LET Sbjct: 83 RNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETS 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G GL G+ + + I RP +R +I + + + W ED +N Sbjct: 143 LLFFTR-----GTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNY 195 Query: 196 DDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R R+R V +L +LKM K + R + L + + Sbjct: 196 EVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLD 255 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RV 307 + + + L L ++R Y +E V L+ G G V++G Sbjct: 256 VKKLKEKPL----ALQRRVIRKFIGEK-------DYEKVELVRSLLEKG--GEVNLGKGK 302 Query: 308 VIDRRANFLWITR 320 V+ R+ +L ++ Sbjct: 303 VLKRKERWLCFSK 315 >gi|304405794|ref|ZP_07387452.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9] gi|304345037|gb|EFM10873.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9] Length = 480 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 64/274 (23%), Positives = 99/274 (36%), Gaps = 14/274 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66 + R + I++AVSGG DSM LL +H + + ++K A VDH R + Sbjct: 10 AARDSDQLWQQGDTIVIAVSGGPDSMMLLHLMHRIATA---DRLKLVAAHVDHGFRGAES 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLI 122 E V +L IA V + A+R RY + + A A I Sbjct: 67 TAEGEQVRAFAEQLGIAFEAVKLDMPTYIEETGMNGQLASRLRRYEFLHQVASRHGANRI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH DDQ ETV MR R D N+ + RP LR + DI ++ Sbjct: 127 ALAHHADDQAETVLMRMLRGAGAG---GLAGIQPKRLDKNVELIRPLLRMYKTDIFRYIS 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIP 239 Q I + D SN + R +R V L + + + +L + + Sbjct: 184 QYEIPYAMDSSNEKRDYFRNEIRLDVMPYLAKYNPQLPVSLNRLAELASAEDQWMNDEAS 243 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 + + + ++ D L L+ Sbjct: 244 RVFKQLVTCSKGMDCELHRADFAGLPVALQRRLI 277 >gi|312864100|ref|ZP_07724335.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396] gi|311100332|gb|EFQ58540.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396] Length = 280 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 67/251 (26%), Positives = 106/251 (42%), Gaps = 21/251 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ Sbjct: 17 QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEEDYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 +I ++ AAR RY + K + + ++TAH DDQ ET++M Sbjct: 74 KEHKIPFH----YSAFSGKFSENAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+CD + I RPFL + + ED SN+ Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKAQLPIT------FHFEDKSNSSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + L + KF++ + + +A L+ K L + I + Sbjct: 181 AYLRNRIRLT----YIPTLSQENPKFKEHLCLLADEIA-LMEKALEELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLL 268 + + YLL Sbjct: 236 QQQTDAVQYLL 246 >gi|332879339|ref|ZP_08447036.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682759|gb|EGJ55659.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 447 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 111/320 (34%), Gaps = 38/320 (11%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVR 71 LV P ILVA+SGG+DS+ +L A + LR + + + Sbjct: 18 HQLVEPDDKILVALSGGADSVA-------LLLVLLQAGFHCEAAHCNFHLRGKESDRDEK 70 Query: 72 YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V D+C I + + + AARE RY E I AH Sbjct: 71 FVRDLCRSRSIRLHTKDFDTMAYAREKGISIEMAARELRYGYFEELRTDWRFDKIAVAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + R KG+ T + N ++ RP L RE+I +L S Sbjct: 131 RDDNVETLLLHLVRGTGLKGL-------TGMRYRNGYVIRPMLDTSREEIERYLAGEGQS 183 Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + D +N + R ++R + V L L ++ +D N A+ L + Sbjct: 184 YVTDSTNLETEAVRNKIRLEFLPILKTVNPSILDTLQDTIRHLEDAYTLYNIAIEDLKAR 243 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + I + + T+LF LL E V L G Sbjct: 244 ICRNNRIDIQTLK--TIPAARTVLFELL---------SSYGFNSVQTEEVFDHLDGGSGK 292 Query: 301 CVSIGRVVIDRRANFLWITR 320 + R L ++R Sbjct: 293 VYESHEWRLLRDRKTLVLSR 312 >gi|15806226|ref|NP_294931.1| cell cycle protein MesJ /cytosine deaminase-like protein [Deinococcus radiodurans R1] gi|84039866|gb|AAF10777.2|AE001969_6 cell cycle protein MesJ, putative/cytosine deaminase-related protein [Deinococcus radiodurans R1] Length = 600 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 116/291 (39%), Gaps = 31/291 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV VSGG+DS+GLL AL +V + + +DH LR + D+ +VSD+C+ Sbjct: 55 GRQVLVGVSGGADSVGLLRALLAVGALPA-------VAHLDHALRPESVDDAAWVSDLCA 107 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RL + V ++ L AAR RY ++S AK A +I+TAHT DQ ET Sbjct: 108 RLGVPCEVTRIDVGAVAARRNWNLEBAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAET 167 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M R + + RP+L R +I ++L W ED SN Sbjct: 168 VLMELLRGEGRI---------RGIPPQRGRVRRPWLNVGRAEIETYLRGLGQDWREDASN 218 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D RF R +RR V + L +F + + + + Sbjct: 219 ADPRFTRAWLRREVMPVLLT-------RFPAAETALAQVAELGAEDDAALQALAARLTPH 271 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 L +L L + GG + + L +G+ +++ Sbjct: 272 TPLDRQPPAVLRRWLA-AELRSGGLDFTA--EQLRDLAGALNAGQTRHLTL 319 >gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 488 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 117/348 (33%), Gaps = 46/348 (13%) Query: 4 SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +++VR F + L H+ +AVSGG+DSM LL + + ++ I + V+H Sbjct: 5 EILQTVRGFCAREKLLDGKQHLALAVSGGADSMALLCLIRPLAGEKG---IALTVCHVNH 61 Query: 61 CLRET-AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114 LR A + +V +VC+RL + V + + KP+ G AR RYA Sbjct: 62 GLRGETADRDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG-EDWARRLRYACFERVL 120 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + TAHT DQ ET+ R R G GL G RP L R Sbjct: 121 AE-GIDAVATAHTGSDQAETLLFRLAR-----GTGLHGAAGIRPSRPGY--LRPLLCLTR 172 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-------FVRDIDLHALYLKMKKFQDLR 227 D + W D +N D + R R+R V H L +K Sbjct: 173 ADTEAVCRACGEGWVTDETNDADDYARNRLRHGALPALCGVNSAAEHNLARFCEKAAKAD 232 Query: 228 VKVNNAVAMLIPKYLTVHMRSI-------------IAISQDILNIDSTLLFYLLRVSAAI 274 L+ S+ + +S+ + D +L L Sbjct: 233 EYFARQADALLASAQAADAESLPGGAGYALRSGQPVWLSEPLRQTDPLILDMALHSLV-- 290 Query: 275 CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 + R++ L G V + V + + Sbjct: 291 ---EPVRDAEEKYIRLLAGLVEKGSGAVQLTDAVRFCARDGVLWREEA 335 >gi|328954659|ref|YP_004371992.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2] gi|328454983|gb|AEB06177.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2] Length = 510 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 33/312 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKD-EVRY 72 +++ VSGG+DS LL+ + D S + + + V+H LR +A D + + Sbjct: 29 PVVLMVSGGADSTALLLMACTSKLDIDDGCGRASIARNRLHVLHVNHHLRGSASDGDEAF 88 Query: 73 VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTI--------NATLIM 123 V ++C RL + V L AAAR+ RYA + K + + I Sbjct: 89 VRELCRRLGVPVCVEHASLRDLGGRNLEAAARDVRYAAARRYLKELVEEAGCPRRSARIA 148 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAHT +D+ ET +M + R G+ + + I RP + E+++ +L Sbjct: 149 TAHTANDRAETFFMNAIRGSGISGL-------SSIPRRRNLIVRPLIDRTHEELQRYLEV 201 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAM 236 + W ED SN D F R VR + + + + D + A Sbjct: 202 AGLRWREDESNRDTSFLRNYVRHRLMPVAMERNRNLVRTVAASCDILADEDAYMQKLAAT 261 Query: 237 LIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + ++ ++ D L L ++R++ Q L ++RV+ + Sbjct: 262 ALRSCTRREGAGLLVLNADRLAATQIALARRMVRLAVKRIDPQARL-EMDHVQRVLECVA 320 Query: 296 SGKRGCVSIGRV 307 +G+R G + Sbjct: 321 AGERSITLPGGI 332 >gi|254448066|ref|ZP_05061530.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015] gi|198262492|gb|EDY86773.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015] Length = 432 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 133/334 (39%), Gaps = 22/334 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + +ES+ + +VA SGG DS LL AL ++ K + AI V H Sbjct: 1 MTHALVESLSQRLAQWPQ-GRFVVAFSGGLDSTVLLHAL-----TKTPHKARLKAIHVHH 54 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINA 119 L++ A D + + L +A S+ L A AR+ARY +S+ ++ Sbjct: 55 GLQDVADDWLTHCEQFSRSLDVAFEACRVLVPSESGLSLEARARDARYRALSDSLQS--G 112 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++TAH +DQ ET+ + R +G+ + + W RP L + D++S Sbjct: 113 DVLLTAHHAEDQAETLLLNLMRGSGVEGLSAMPELKALSPSRSTWHGRPLLNQSKADLQS 172 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + Q + W ED SN D++F+R +R V + + + + + Sbjct: 173 YARQFQLQWVEDHSNRDEQFDRNYLRHRVMPLLQQRWPKAAESMSASVRHLQSVRQRELD 232 Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-- 294 + +H R + + ++ + L + A G P Y+ ++ + Sbjct: 233 YWQQMARLHTRERGKVLP-LSALEGMVKADRLSLIRAWLAGSEPAPRYKILQAIDALCYS 291 Query: 295 ----KSGKRGCVSIGRVV---IDRRANFLWITRA 321 + G V+ G+ + R L+ RA Sbjct: 292 ELGERQEGAGTVAWGKDQRQGVSRFQKALYWRRA 325 >gi|150005405|ref|YP_001300149.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482] gi|149933829|gb|ABR40527.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482] Length = 417 Score = 190 bits (483), Expect = 4e-46, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 116/318 (36%), Gaps = 42/318 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 +LVA+SGG+DS ++L A + LR E + + R+V+++C Sbjct: 2 HDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNFHLRGEESDRDERFVNELC 54 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + V + S+ + AARE RY + K +I AH DD +E Sbjct: 55 KGLGVTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVE 114 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + R G+ + N I RP L R+DI +L + D + Sbjct: 115 TFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQDILDYLRCLRQGYVTDST 167 Query: 194 NTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N D + R ++R R + ++ ++ D+ + N + + + Sbjct: 168 NLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSLIYNKEIEAGKERVMEKSG 227 Query: 247 RSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVS 303 +I + ++ + + LLF +L G+ S++ V L + Sbjct: 228 HILISRLMEE--SAPAALLFEIL-----------HPLGFNSVQVGDVFRSLSAQSGKRFV 274 Query: 304 IGRVVIDRRANFLWITRA 321 + R L I R Sbjct: 275 SAGWEVLRDRTELIIRRR 292 >gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163] gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163] Length = 299 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 9/253 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+A+SGG DS L L S+ + VDH LR + +E + + D + Sbjct: 23 KLLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRADSANETKLIDDQFANR 79 Query: 81 RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + W K P +G+ AAR+ RY A + A I+ A DDQ ET ++ Sbjct: 80 GLCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKI 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + + + D + + RP L + +I + + ++ W ED +N D + Sbjct: 140 IRGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDY 199 Query: 200 E-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R ++R V L AL + + L ++ + S L Sbjct: 200 TSRNQIRNVV----LPALKQINPNSARNIASFAEQIREVNENQLIEMLKIWLHDSIGFLP 255 Query: 259 IDSTLLFYLLRVS 271 I + L R+ Sbjct: 256 IKRSQLEQFERLL 268 >gi|313889103|ref|ZP_07822759.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844843|gb|EFR32248.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 444 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 119/305 (39%), Gaps = 21/305 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + VSGG+DSM L + D + ++H +RETAK + +V C I Sbjct: 23 LGVSGGADSMYLFYNFMDLKDD---WDLDIIVCHLNHGIRETAKRDEEFVKKSCQAYGIK 79 Query: 84 HSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + + A R RY E++K I+TAH +D+ ETV Sbjct: 80 FISKTVNMDEFARNEKISSEEAGRILRYEFFRENSK---GRKILTAHNANDRAETVLFNI 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R KG LSG+ +N + RP + +RE+I +L + + + +D +N ++ + Sbjct: 137 MRGTGLKG--LSGIS-----HVNKDVYRPLINIKREEIEDYLHKNKLQYYDDETNFEEIY 189 Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R ++R + + + + + + N+ + ++ + + I +I Sbjct: 190 TRNKIRLGLIPQLKKFNPDIINSLLRLSENAEEANDFIGEILEENYNNCLGDNFLIPSEI 249 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANF 315 + + +++ ++ ++ + + +G+ + R + Sbjct: 250 KKLKKFIGQEVIKKYLEENFYSENILSRSNILAIYDLCLGDSGRQIDLGKNISARRSYDK 309 Query: 316 LWITR 320 ++I Sbjct: 310 IYIEE 314 >gi|315608203|ref|ZP_07883195.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574] gi|315250172|gb|EFU30169.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574] Length = 467 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 31/259 (11%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M L I+ V+ ++ S L +VA+SGG+DS+ LL+ L + A Sbjct: 1 MML--IDKVKGYIHSHQLLQSGETYIVALSGGADSVALLLILKEL-------GYSVEAAH 51 Query: 58 VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112 + LR E +K + + +C+ I + + + + AAR RY + Sbjct: 52 CNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARNLRYHYFDQ 111 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 I A I AH +D +ET+ + R +G L+GM N ++ RP L Sbjct: 112 LRLAIGAKGICVAHHLNDNVETLLLNLIRGTGIQG--LTGMAS-----RNGFVLRPLLDV 164 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225 R E+IR +L N ++ D +N +D R ++R V + + + D Sbjct: 165 RHEEIREYLHSINQAFVIDSTNLEDDVLRNKIRLNVIPMLEGLNPAVVDNIAKTIHNLVD 224 Query: 226 LRVKVNNAVAMLIPKYLTV 244 +V +++ + + V Sbjct: 225 AKVVLDDVTKQFMSHGVAV 243 >gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506] gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506] Length = 342 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 124/302 (41%), Gaps = 13/302 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + A IL+AVSGG DS L++ R G + + +VDH LR A+ E V Sbjct: 26 FLRHARILLAVSGGPDSTALMLLAQRWREGRDAGP-ELAVATVDHGLRAEARTEAEAVGA 84 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +RL + H+++ + P+ L AAR ARY + HA+ I A+ I TAHT DDQ ETV Sbjct: 85 LAARLSLPHAILDLSSPLPKARLQEAARHARYEALLAHARAIGASAIATAHTLDDQAETV 144 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R R G L+G+ + + RP L + + + I + EDPSN Sbjct: 145 LFRLMRGSGIGG--LAGIPSERALAE-VELLRPLLGLPKAHLIEECRRAGIGFAEDPSNR 201 Query: 196 DDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D RF R R+R + +D AL + + + + I Sbjct: 202 DPRFARARLRALLPALAEEGLDAPALARLANRMTRAEAALEATTDTAAARL--WPAQGPI 259 Query: 251 AISQDILNIDSTL--LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 S+ + L L R A+ G + L + + L G ++ + Sbjct: 260 RFSRPGFSELPAEIGLRLLGRAVEAVANGPVELGKLEVLHGWIAALGPEDHGARTLAGAL 319 Query: 309 ID 310 + Sbjct: 320 VR 321 >gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN] gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN] Length = 320 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 23/321 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +S + + V +SGG+DS LL+A + AI V H L+ A Sbjct: 3 QSFSAAMEQFAPALPLAVGLSGGADSTALLLACARKWPG------QVQAIHVHHGLQAAA 56 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL---- 121 D R+ D+C L++ +V P AAR ARY + A Sbjct: 57 DDFERHCQDLCKCLQVPLTVQRVDARHAPGESPEDAARRARYKAFEAVVQAHPAPFAISS 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I A DDQ+ET+ + R G+ ++ RP LR +R +L Sbjct: 117 IALAQHADDQVETLLLALSRGAGVAGLAAM---PARWERGGVFWHRPLLRVAGAHVRDWL 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + W EDP+N D+RF R R+R + L A + + + L+ + Sbjct: 174 RAQGQGWVEDPTNQDERFTRNRIRAQLLP-ALEAAFPSFRDTFARSAAHAAQASELLQEM 232 Query: 242 LTVHMRSIIAISQ--DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--- 296 + + Q + + +LR + + P + ++ L + Sbjct: 233 AQQDLLQVGIPPQLAPLRALSRARQSNVLRHWLRVA--HATTPTAAQLGELLDQLAACTT 290 Query: 297 -GKRGCVSIGRVVIDRRANFL 316 G R + +GR + R L Sbjct: 291 RGHRIHLKVGRGFVGRSGPQL 311 >gi|182682123|ref|YP_001830283.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23] gi|182632233|gb|ACB93009.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23] gi|307578388|gb|ADN62357.1| cell cycle protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 435 Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R +LVA SGG DS LL L S + R G AI + H L E A Sbjct: 5 FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 61 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + C++ I + S + AA H + AH DDQ Sbjct: 62 HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R + GL+ M + + RP L R + + Q+++ W ED Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 176 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250 SN D R +R +R V + LH + + + A A L+ V + ++ Sbjct: 177 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235 Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305 A+ + L L + G LP +ER +L + C + Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R L++ R P+ +W G + + + Sbjct: 296 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 350 Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389 + A+R +P + PL Sbjct: 351 PHPLRVRARRGGERLILPGRTHSHPL 376 >gi|161833732|ref|YP_001597928.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri GWSS] gi|152206222|gb|ABS30532.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri GWSS] Length = 436 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 19/222 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I +F++++ I V+VS G DSM LL L + I + Sbjct: 7 FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + + ++ + C + +I ++ K + AR+ RY Sbjct: 56 LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD +ET ++ R G G+ G+ + I RP +++I S+ Sbjct: 116 YIALGHHLDDSIETFFINLIR-----GTGIKGLIGINNFKK--KIIRPLSFFSKKEIISY 168 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + NI W ED SN D ++ R R+R F++ I + Y KK Sbjct: 169 AQENNIKWREDNSNYDHKYLRNRIRFFLKPILDYKFYNGFKK 210 >gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211] gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211] Length = 299 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 140/304 (46%), Gaps = 14/304 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 AVSGG DS+ L L + S + +K+ VDH LR + E + V + I Sbjct: 2 AVSGGPDSLAL-SFLTKIYSLKKSLDVKYFL--VDHRLRINSTIEAKSVQKLLKNFYINL 58 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 ++++WK SKP+ + + +R+ RY L+ + A I+ H DD E ++R R Sbjct: 59 NILTWKGSKPEKNIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFENFFIRILRGSG 118 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI-SWCEDPSNTDDRFERVR 203 G+ D + + RP L + D+ +L + S+ DPSN +D+F+RV+ Sbjct: 119 LNGL---VSLDRETQRDTVNLIRPLLEINKNDLV-YLSKYVFGSYVNDPSNENDKFKRVK 174 Query: 204 VRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDIL 257 VR F+ +D + L+L ++ + + + V + K +T + + + + ++ Sbjct: 175 VRNFINQLGLEGLDKNKLFLTIRNLKLANENIKHYVEENLEKNITILSTKDKLILKKNFF 234 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 + ++F I G + + +++++ +K+ +++G VI + + + Sbjct: 235 SHSDEVVFRSFTEILKIIGKKYYPVRGKKIDKILQSIKAKSSFKLTLGGCVIKKVNDTII 294 Query: 318 ITRA 321 +++ Sbjct: 295 VSKE 298 >gi|119509008|ref|ZP_01628159.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414] gi|119466174|gb|EAW47060.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414] Length = 333 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 12/285 (4%) Query: 14 RSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L +LVAVSGG DS+ L+ L + + DH R ++ + Sbjct: 17 RQLFERHQRLLVAVSGGQDSLCLIKILLDLEPKWGW---DLGIAHCDHRWRTDSEANASH 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + ++ ++ AAAR RYA +S A+ N I+T HT D+ Sbjct: 74 VEKLAKIWGVSFY---LATAREPLNSEAAARNWRYAALSAIAQANNYQYIVTGHTASDRA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R G GL + ++ + RP L R F + ++ ED Sbjct: 131 ETLLYNLMRGTG--GDGLQALTWQRPLTADICLVRPLLEITRTQTEEFCQEFHLPIWEDS 188 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D ++ R R+R+ + K++ + V L + ++ Sbjct: 189 TNLDVKYARNRIRQELIPYLQANFNPKVESALAQTAELLQAEVEYLEQAAQKLRSEAMEW 248 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 N L + A + + + + +++++ S Sbjct: 249 GVVSGENWAELRLNRRVLQKAPLALQRRVM--RQILQQILTDASS 291 >gi|322377896|ref|ZP_08052384.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334] gi|321281072|gb|EFX58084.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334] Length = 425 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 33/271 (12%) Query: 3 LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + + F++ + H +++A+SGG DSM L L + + I+ V+H Sbjct: 1 MREQDFLNHFLKRGYFKKHTKVVLALSGGLDSMFLFKVLSTYQEELE---IELILAHVNH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R + E + + + + + + ++ A AR+ RY E K AT Sbjct: 58 KQRVESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARDFRYDFFQEVMKKTGAT 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ+ET+ MR R + LSG+ + + ++ + RPFL+ ++D S Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVG-DIEMIRPFLQFHKKDFPS- 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 -----IFHFEDISNQENHYFRNRIRNS----YLPELEKENPRFRDAILSLGNEI------ 214 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + +AI++ NID L LL S Sbjct: 215 -----LDYDLAIAELSKNIDVENLEQLLSYS 240 >gi|282879854|ref|ZP_06288581.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1] gi|281306248|gb|EFA98281.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1] Length = 448 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 128/355 (36%), Gaps = 38/355 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F IE + L LVA+SGG+DS+ LL L ++ + A+ Sbjct: 4 FEQHIEQYISSLSLLNKEELYLVALSGGADSVCLLRCLQAL-------GYRLEAVHCHFH 56 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR E A ++ + D+C++L+I + + AAR+ RY+ + + Sbjct: 57 LRAEEADRDLSFCQDLCAKLQIPFHSTHFDTKTYAQSHGVSIEMAARDLRYSFFRKMVQA 116 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +A + H +D +ET+ + R G+ T + I RP L R Sbjct: 117 RHAAAVCVGHHSEDSVETILLNLVRSTGIHGL-------TGISPKKGIIVRPLLCVNRLK 169 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233 I +L ++ D +N +R ++R V A + + K + + Sbjct: 170 IIDYLHSIQQNYVTDSTNFVADVQRNQMRLQVIPQLEKINPAAQVNILKAAQRLSDIADI 229 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + + + H +L+YLL+ +E++ Sbjct: 230 FDNYLSQQVRWHPSEGYRWFPIAELTHEYILWYLLK---------DFHFSSVQVEQIWQN 280 Query: 294 LK--SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL--YPEETTVWDGRYQF 344 L SGK+ S +++DR + A P+ +L +D ++Q Sbjct: 281 LHGESGKQWQSSTHELLLDRNRLLIA---ARSAFPSTVLSMPRIGNYRYDDKWQL 332 >gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58] gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58] Length = 314 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 26/305 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +AVSGG DSM LL S R +A++VDH LR + DE V+ C Sbjct: 29 RFGIAVSGGPDSMALLCLAASAFPGR------VAAVTVDHGLRRESADEAALVARWCVAH 82 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I H + + + A AR RY L+ + IMTAH DDQLET+ MR Sbjct: 83 GIEHVTLPADAT-VTGNVQAWARTTRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLN 141 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ + ++ + RP L R+ +++F+ + + + +DPSN D RF+ Sbjct: 142 RGSGIGGLA-------GVRAVSGRVIRPLLGERKAMLQAFVDREGLPYVQDPSNRDRRFD 194 Query: 201 RVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R +R + +D A D + +V L +Y+ + D Sbjct: 195 RATLRMALSGATWLDAQAATRSAAALADAEAAILWSVTQLADQYIRADGDGWRLVRTDF- 253 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 L L+ + G + P S++R + +G + S+G ++ +W Sbjct: 254 --PREYLRRLVLHMLTLAGSK--PPRGESLDRALQAAATGHQA--SLGDWLLK--GGAIW 305 Query: 318 ITRAV 322 R Sbjct: 306 TLRPA 310 >gi|194335822|ref|YP_002017616.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194308299|gb|ACF42999.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 328 Score = 189 bits (481), Expect = 7e-46, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 127/336 (37%), Gaps = 38/336 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E +R R LV +LVAVSGG DSM +L +V R + + + + L Sbjct: 7 KFLEQLR--TRRLVEEGDRVLVAVSGGPDSMAMLSLFCAV---RPLLRAELAVAHCNFQL 61 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R + + +V D C L + V + + + + +AR RY + + Sbjct: 62 RGAESDGDESFVLDHCRSLDLECFVDHFDTLRFAGEWKRSVEESARILRYTFFRQVMEQK 121 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + I T H +D ET+ R + G+ + LN I RP L + D+ Sbjct: 122 GFSKIATGHHVNDNAETILFNLFRGVSLPGL-------RGIRALNGKIIRPMLLFHKADM 174 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNA 233 ++L ++ I+ D SN + ++R +R V + L +++ + +++ Sbjct: 175 VAYLKEKGITSRTDTSNYANDYDRNFIRNRVIPLIEERFAGKLMPSLRRVSEQAGELSEF 234 Query: 234 VAMLIPKYLTVHMR--------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + + S+ A+ Q + +L LR A+ R Sbjct: 235 LELYFENLCEREPGLALNEGKLSVFALQQLTVFEQKEVLKRALRDLHAVV-------DAR 287 Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANF-LWITR 320 ++++++ L S V G + + L R Sbjct: 288 TLQKLVDLLGSQPGKMVMAGGQLRVLWKDGMLCFFR 323 >gi|262038802|ref|ZP_06012153.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264] gi|261747177|gb|EEY34665.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264] Length = 307 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+A SGG DS+ L L S ++ + + V+H LR + ++ +V Sbjct: 23 GDKILLAFSGGPDSVFLYRILSFFQEKYS---LELALMYVNHNLRHDVEKDLEFVKRFSE 79 Query: 79 RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + S SK + AARE RY+ ++E A + I T H DD +ET Sbjct: 80 ENGVQLYTESVNVNDYSSKNRKSTELAARELRYSALTEKADDVGYDKIATGHNLDDNVET 139 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R R + KG+ + + I RP L +++I L N + +D +N Sbjct: 140 FIFRLLRGTSIKGL-------KGIPEKRENIIRPILSFEKKEILDCLKANNEEYIKDYTN 192 Query: 195 TDDRFERVRVRRFVRDIDL----------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + + R +R + + L L ++K ++ K + V L + + Sbjct: 193 EQNDYTRNYIRNDIFPMFLRINPNFRRKIDELISEIKNKENGENKKADFVKYLEENDIEI 252 Query: 245 HMRSIIAISQDILNIDSTL 263 + R I I +I + + + Sbjct: 253 NRRKINRIYSNIFDEEGNI 271 >gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB18] gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB18] Length = 346 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 21/333 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ ++ + F A +++AVSGG DS+ L+ G S I+VDH L Sbjct: 9 ITAQQAKQLFADWRDAKA-VVLAVSGGPDSLALMWLAARWRKALRRGP-AISVITVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + L + H + W+ KP TG+ AAAREARY L++ A+ A+ + Sbjct: 67 RPEAAREARDVKRHAAELDLPHRTLRWRGDKPSTGVPAAAREARYQLLARAARAAGASHV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ET+ MR R G+ + I+RP L + + + L Sbjct: 127 MTAHTRDDQAETLLMRMSRGSGIAGLAAM---ARQTERFGVIIARPLLEVSKAQLVATLD 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP-- 239 + I + DPSNTD R+ R R+R + + + + + N A+ +L Sbjct: 184 KAKIGFATDPSNTDPRYARPRLRGLIAAYAEEGFDARNLARLASRLARANAALEVLADGA 243 Query: 240 -KYLTVHMRSIIAISQD---ILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLF 293 ++L + D + + + LL + G G L ++ + Sbjct: 244 EQFLALRDNDSAQPGCDARAFAALPAEIKVRLLLRTIDRLGDEGPAELGKVETLVAEIDR 303 Query: 294 LKSGKRG-------CVSIGRVVIDRRANFLWIT 319 + G ++ +I + L I Sbjct: 304 AIAQNSGGHGRIALKQTLAGALITLGRDRLRIE 336 >gi|309778158|ref|ZP_07673093.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53] gi|308914067|gb|EFP59872.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53] Length = 406 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 16/256 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + ++ VSGG DSM LL ++ +++ R+TA ++ V Sbjct: 7 LEKGTYIIGVSGGPDSMALLDMCRK-------EGLRLVVAHMNYQKRDTANRDMELVRSY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C+ I + + A ARE RY + E K +A+ ++ AH DD LET Sbjct: 60 CAHFHIPFEA-RLQTKRCVGNFQAFAREERYRMYQELLKQYDASAVLLAHHLDDHLETYL 118 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M +R ++ +G+ + + I RP + + ++ ++ + + + D SN Sbjct: 119 MAKERGSMKEYLGI----QEEAFIMGCRIIRPLMAYSKRELEAYCRENAVPFGIDESNLS 174 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D + R R+R + + + K K+ + N + K + + + + Sbjct: 175 DHYARNRIRHEI----VERMSEKEKETLMETISRENIRMQQLRKDCRAFLDAWDGTLRSL 230 Query: 257 LNIDSTLLFYLLRVSA 272 +DS L +L Sbjct: 231 RMLDSYFLEQVLITWI 246 >gi|325269878|ref|ZP_08136488.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella multiformis DSM 16608] gi|324987851|gb|EGC19824.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella multiformis DSM 16608] Length = 456 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 89/445 (20%), Positives = 157/445 (35%), Gaps = 54/445 (12%) Query: 6 IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR F+ + L A LVA+SGG+DS+ LL+ L + + A+ + L Sbjct: 2 LNKVRRFIANEHLLHAEALYLVALSGGADSVALLLTLKEL-------GYRVEAVHCNFQL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + R+ ++C R I V + + + AAR+ RY + +T+ Sbjct: 55 RGEESLHDERFCQELCRRENIPLHKVHFDTRSYATLHKVSIEMAARDLRYHYFFQLKETL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H +D +ET+ M R KG+ + I RP L R +I Sbjct: 115 GADAVCVGHHEEDSVETILMNLVRGTGLKGL-------MGIRPKKDGIVRPLLCVSRHEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L RN + D +N R ++R + + ++N ++ Sbjct: 168 EAYLHARNEPFVTDSTNLVADVVRNKIRLTILPRLAEINPSVNEAILHTAEHLSNVDRIV 227 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY------------- 284 +II + I D + +++ + Q P + Sbjct: 228 QNVLQNTLREAIIPVDSTIGEEDIPSTDHAFKLNLKVI-RQFPAPSHLLFHVLRPLGFTP 286 Query: 285 RSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-- 340 +E L ++G+ S + DR F+ R ++ P DG Sbjct: 287 SQIEETAGHLEGQTGQVWTSSTHELTHDRDVFFVMPVEKERKHTLVMPEPGRYVYDDGLS 346 Query: 341 ----RYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS---MPSKEGGKPLLAPF 393 R + S S Q+ D S P+ +RA +P G L++ F Sbjct: 347 VRLTRKRLL-PSQSPSFSRSQTIIDLDASSIRFPLTLRRAAEGDRFVPLGMDGAQLVSDF 405 Query: 394 ------SRFMTKFDLPVAYAFSISF 412 +RF + L +A A Sbjct: 406 LTNLKRNRFEKRGQLILADATGTIL 430 >gi|307710369|ref|ZP_07646810.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564] gi|307618961|gb|EFN98096.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564] Length = 425 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 38/303 (12%) Query: 3 LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + + F+R + H +++A+SGG DSM L L + + I+ V+H Sbjct: 1 MREQDFLNHFLRKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R + E + + + + + V ++ A AR RY E K AT Sbjct: 58 KQRIESDWEEKELRKLAAEAGLPIYVSNFSGEFS----EARARHFRYDFFQEVMKKTGAT 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ+ET+ MR R + +SG+ + + + I RPFL ++D Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--ISGIKEKQVVGE-IEIIRPFLHFHKKDFPP- 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 -----IFHFEDTSNKENYYFRNRIRNS----YLPELEKENPRFRDAILSIGNEILDYDLA 220 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-------RSMERVMLF 293 + + Q + + + LL Q L + E V Sbjct: 221 IDELSNNIDVEDLQQLFSYSESTQRVLL---------QTYLNRFPDLNLTKAQFEEVWQI 271 Query: 294 LKS 296 LKS Sbjct: 272 LKS 274 >gi|228476807|ref|ZP_04061455.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126] gi|228251544|gb|EEK10681.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126] Length = 421 Score = 189 bits (480), Expect = 9e-46, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 124/322 (38%), Gaps = 25/322 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ILVAVSGG+DSM LL L++ D I+ V+H R+ ++ E Y+ Sbjct: 17 QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEHEEAYLRHWA 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ AAR RY K + ++TAH DDQ ET++M Sbjct: 74 KEHKVPFH----YSAFSGKFSENAARTFRYEFFKRVMKDYEYSALVTAHHADDQAETIFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + L+G+ + I RPFL ++ + ED SN Sbjct: 130 RLLRGSRLR--HLTGISAIRPFGTG-QIIRPFLHLTKDQLPVT------FHFEDRSNMSL 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R L L + KF++ + + L+ + L + I + Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLAEEI-GLMKQALGELTKDITITDLSVF 235 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315 S + L + + L +++ +L+ G + + G ++ + +F Sbjct: 236 QQQSDAVQLFLLQNYLDTFPDLQL-SKGQFNQLISYLRKNVSGKIPLINGYELVKTQTSF 294 Query: 316 LWITRAVRNL-PTLILYPEETT 336 L +L P +L ++ Sbjct: 295 LIRKEEAISLSPPCLLEFGKSV 316 >gi|218245074|ref|YP_002370445.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801] gi|218165552|gb|ACK64289.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801] Length = 326 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 23/314 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73 L IL+A+SGG DS+ L L + S + K + DH + DE +V Sbjct: 19 LPKGQRILMAISGGQDSVCLGKLLLDLQSKWGW---KIAIGHCDHRW---SYDEGIADHV 72 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I + N K AAAR+ RY + E A+ + T ++T HT D+ E Sbjct: 73 EKLAQNWGIPFYLKVANNLKET---EAAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAE 129 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R G LS + N+ + RP L R + +F Q ++S ED + Sbjct: 130 TLLYNLIRGAGTDG--LSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLSIWEDAA 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N + ++ R R+R+ + +++ +V A + + + I Sbjct: 188 NKNLKYSRNRIRQQLIPYLQTQFNPQVETNLAQTAEVLRAEVEYLETSAKMVLEQAINED 247 Query: 254 QDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--G 305 Q LN + L ++R + P + +E + + + +R S G Sbjct: 248 QTQLNRLILQSVPLALQRRVMRKFLQKISQRE--PNFEQIEALTQLIDAPRRSRTSSLPG 305 Query: 306 RVVIDRRANFLWIT 319 + + +++ ++ Sbjct: 306 NFSAEVQGDWIILS 319 >gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1] gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1] Length = 346 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 147/333 (44%), Gaps = 23/333 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ R F PA I++AVSGG DS+ L+ G + ++VDH L Sbjct: 9 VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMWLAARWRKSLKQGP-ALAVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + + L + H + W KP TG+ AAAR ARY L++ AKT+ A+ + Sbjct: 67 RPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLANAAKTLGASHV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M I D + ++RP L + + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLIATLA 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + I++ DPSN D RF R R+R + + + +R +A L+ Sbjct: 184 KARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARSLVRLAVRAARADAALELMTDGA 243 Query: 243 TVHMRSIIA-------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + S+ A ++ L + + + LL + + G + P +E + LK Sbjct: 244 EQFLASLDAGLERPGVDARAFLGLAAEIQIRLLLRTLSRHGHEG-PPELGKVEVLAEALK 302 Query: 296 SGK----------RGCVSIGRVVIDRRANFLWI 318 R ++ VI + L I Sbjct: 303 QAAARSPQAAAKIRLKQTLAGAVISLTGDRLVI 335 >gi|163783225|ref|ZP_02178219.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] gi|159881559|gb|EDP75069.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] Length = 317 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 23/303 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + + ++ + + + +LVA SGG DS+ L+ AL + + K+ +H Sbjct: 7 LIRKVVRLQREEKLIPPGSSLLVAFSGGVDSVSLVDALLELRDFLNLKKLSL--AHFNHR 64 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 LR+ A +E + + + V V + L ARE RYA + + Sbjct: 65 LRKEADEEEEFCREFARSRELDIFVGAEDVGEVARREGRNLEEVARELRYAFLRKVKNER 124 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 LI TAH +D +ET + R +G + RP +RE+I Sbjct: 125 GYDLIATAHHLNDLVETALIWLSRGAGLEGF-------LAFEPREGDVVRPLYGVKREEI 177 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAV 234 S+ R + W ED SNTD RF R RVR V + L + + + N + Sbjct: 178 LSYAEARGLRWVEDTSNTDPRFFRNRVRMEVIPVLKSMNPNLEETFLRTRRILKDENELL 237 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 L L +++ + +LR+ + + +E++ L Sbjct: 238 EELSMNALKGAKEGNCLRVKELQGSHVAVQRRVLRLFTGVRN-------FSKIEQLRNLL 290 Query: 295 KSG 297 K G Sbjct: 291 KRG 293 >gi|325106138|ref|YP_004275792.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145] gi|324974986|gb|ADY53970.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145] Length = 449 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 76/372 (20%), Positives = 136/372 (36%), Gaps = 42/372 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I F ++ IL+A SGG DSM ++ H K + + Sbjct: 8 FLDYISKYDLFDKN----ETILLATSGGRDSMAMVYLFH-------LSGFKTAIAHCNFN 56 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR E + + +V + +L + + + + + AAR+ RY + Sbjct: 57 LRGEESVRDEIFVKNTALKLNTPIHIAHFDTTNYAEEHKISIQMAARDLRYDFFEDLCAE 116 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I AH +D +ETV + R GL G+ + I RP L RE+ Sbjct: 117 FKYQKIAVAHHHNDSIETVLLNLIRGTGI--AGLHGIKHSKN-----TIIRPLLCFTREE 169 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVK 229 I F+ ++ I + ED SN D++ R ++R + + F +L Sbjct: 170 IDQFVSEQKIDFVEDSSNASDKYARNKIRLKIIPEMEKINPSLNQTFRKNINYFSELEDF 229 Query: 230 VNNAVAMLIPKYLTVHMRSI-IAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 VN+ + L + I I + + L+ +L +L L + Sbjct: 230 VNHEMNKYKSDLLEPYTNGFKIGIKKIEALHSTKFILSEILLPLGFNTTSINDL-----L 284 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFL--WITRAVRNLPTLILYPEETTVWDGRYQFQ 345 V SGK C R+++DR F+ + + + + + T+ ++ + Sbjct: 285 SAVQQRTISGKTFCSEDYRILLDREYIFIKKLLKKERQ--EKIEIPSGTETIHFNQFDLR 342 Query: 346 NLSDSLIQIGPQ 357 +SD + P Sbjct: 343 -ISDLSKEEKPD 353 >gi|15837261|ref|NP_297949.1| cell cycle protein [Xylella fastidiosa 9a5c] gi|61217426|sp|Q9PFJ8|TILS_XYLFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|9105537|gb|AAF83469.1|AE003910_5 cell cycle protein [Xylella fastidiosa 9a5c] Length = 437 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 115/315 (36%), Gaps = 15/315 (4%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R +LVA SGG DS LL L S + R G AI + H L E A Sbjct: 7 FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLHEHADAWTA 63 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + C++ I + S + AA H + AH DDQ Sbjct: 64 HCAAFCTQHYIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R + GL+ M + + RP L R + + Q+++ W ED Sbjct: 123 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250 SN D R +R +R V + LH + + + A A L+ V + ++ Sbjct: 179 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 237 Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305 A+ + L L + G LP +ER +L + C + Sbjct: 238 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 297 Query: 306 RVVIDRRANFLWITR 320 I R L++ R Sbjct: 298 HTEIRRWRLRLYLHR 312 >gi|212703024|ref|ZP_03311152.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098] gi|212673612|gb|EEB34095.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098] Length = 351 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 123/335 (36%), Gaps = 28/335 (8%) Query: 9 VRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 V F R + L+AVSGG+DS LL + + ++ + +VDH LR Sbjct: 21 VERFCRDGLKMADGKSWLLAVSGGADSTALLFIMVLLAPRHNW---RLHVATVDHQLRPE 77 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121 + ++ +V+ +C RI +++ ++ G AAR ARYAL+ + AT Sbjct: 78 SAEDTAFVARLCQDWRIPCRILTADVARLARQDGLGTEEAARLARYALLEQARLACGATA 137 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+ H D E +R R +G D + RP LR ++ L Sbjct: 138 ILLGHHRSDVAEDQLLRFLRGTGWPALG-----GMRAEDAERHLLRPLLRTDNRALKELL 192 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238 I W ED SN D R+ R R+R V + + L +L + + Sbjct: 193 HHCGILWREDSSNADTRYTRNRLRHTVLPLLRQENPRLEEACLHLWELAGIDGDYWQQEL 252 Query: 239 PKYLT----VHMRSIIAISQDILNIDSTLLF-----YLLRVSAAICGGQISLPGYRSMER 289 ++L I + + +L L + A + GGQ ++++ Sbjct: 253 ERHLARTPWQEASGSITLPRALLRGAHAALRLRLYHRAVARLARLSGGQARSATLLALDQ 312 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 + G + G ++ + + R Sbjct: 313 AWQDGRGGTTFQLP-GNIMAHLKGGSIRFYVENRQ 346 >gi|293364526|ref|ZP_06611251.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|307702816|ref|ZP_07639766.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|291317034|gb|EFE57462.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] gi|307623672|gb|EFO02659.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037] Length = 425 Score = 188 bits (479), Expect = 1e-45, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 22/262 (8%) Query: 9 VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + F+R + +++A+SGG DSM L L + ++ I+ V+H R + Sbjct: 7 LNHFLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQNELG---IELILAHVNHKQRSES 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E + + + + S+ A ARE RY + K + AT ++TAH Sbjct: 64 DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ MR R + L+G+ ++ + D ++ I RP L+ ++D I Sbjct: 120 HADDQVETILMRLIRGSRLR--HLTGIKESQVVD-DIEIIRPLLQFHKKDFSP------I 170 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED +N ++ + R RVR L L + + + + + ++ + Sbjct: 171 FHFEDQTNQENTYFRNRVRNR----YLPELEKENPRLKSAILDLGREISDYQATITELSK 226 Query: 247 RSIIAISQDILNIDSTLLFYLL 268 + + ++ + LL Sbjct: 227 QIDVEDLNELFSYSQQTQGILL 248 >gi|293977842|ref|YP_003543272.1| tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri DMIN] gi|292667773|gb|ADE35408.1| tRNA(Ile)-lysidine synthetase, N-terminal domain protein/tRNA(Ile)-lysidine synthetase, C-terminal domain protein [Candidatus Sulcia muelleri DMIN] Length = 436 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 19/222 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I +F++++ I V+VS G DSM LL L + I + Sbjct: 7 FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + + ++ + C + +I ++ K + AR+ RY Sbjct: 56 LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD +ET ++ R G G+ G+ + I RP +++I S+ Sbjct: 116 YIALGHHLDDSIETFFINIIR-----GTGIKGLIGINNFKN--KIIRPLSFFSKKEIISY 168 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + NI W ED SN D ++ R R+R F++ I + Y KK Sbjct: 169 AQENNIKWREDNSNYDHKYLRNRIRFFLKPILDYKFYNGFKK 210 >gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax ferrireducens T118] gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118] Length = 320 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 115/316 (36%), Gaps = 29/316 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA SGG+DS LL+A + AI + H ++ D R+ VC RL Sbjct: 17 PLAVAFSGGADSTALLLACAEKWPG------QVHAIHIHHGVQAAGDDFERHCQAVCVRL 70 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL----IMTAHTFDDQLETV 135 + V AAR ARY A A + I A DDQ+ET+ Sbjct: 71 GLPLVVKRVDARHASGQSPEDAARRARYKAFEAVALVEYAQVAIKSIALAQHADDQVETL 130 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R GM L RP L DIR +L+ R ++W EDP+N Sbjct: 131 LLALSRGAGLPGMSAMPAS---WRRAGLTYHRPLLGVAASDIRRWLVGRGVAWIEDPTNV 187 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ- 254 D++F R R+R + L AL +F+D V+ A L V + + I Sbjct: 188 DEQFTRNRIRARL----LPALDATFPQFRDTFVRSAAHAAQAQAVLLDVAAQDLAHIGDP 243 Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK----SGKRGCVSIGR 306 + + +LR + P + ++ + G + + +G Sbjct: 244 PAITQLQALSRPRQANVLRHWLNTAFQAV--PSTAQLAELLDQIAVCTTRGHQIRIKVGT 301 Query: 307 VVIDRRANFLWITRAV 322 + +RR L Sbjct: 302 GLCERRGAVLHWYNPA 317 >gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1] gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1] Length = 425 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 148/382 (38%), Gaps = 28/382 (7%) Query: 17 VYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +P H + VAVSGG+DSM L + D + VDH LR ++ E Sbjct: 26 PWPGHGVPVAVAVSGGADSMALAVLARQWRPD-------VVGLVVDHGLRAESRREAEQT 78 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 S L ++ ++ + + + AR RYA +S + I A ++ AH DQ E Sbjct: 79 IGRLSALGLSARLLVLEGLERGPRMAERARRMRYAALSAACREIGALDLLVAHHAGDQAE 138 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR + G+ + + ++ + RP L + + + + ++W EDPS Sbjct: 139 TVMMRQHAASGDDGLAGMALVTPM---HDVRLVRPLLSFAKPALYATVRAAGLAWVEDPS 195 Query: 194 NTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 N D R R R R+ + AL + + R++ + A A + + H + Sbjct: 196 NADLRTGRARARQALAQDAGRDAALKAQALQAGQARMERDRADACWLASHARFHPGGWVV 255 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + + +L L+RV GG P R+ L ++ + ++ ++ R Sbjct: 256 LPAGL--APPRILSALVRV----VGGHDYPPDR---TRINLLAQAPQPATLAGVAIMPWR 306 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRY--QFQNLSDSLIQIGPQSYRKADVPSGIP 369 +L P + + VWD R+ + +L + Sbjct: 307 DGQWLVAREEAAMAPRMPAW--TECVWDRRFVLRAGSLPPDCAMGAAGAVASWWPARRGR 364 Query: 370 PIIAQRALSSMPSKEGGKPLLA 391 P+ R L ++P+ G ++A Sbjct: 365 PVWPARVLRTLPALWHGGRVVA 386 >gi|331265449|ref|YP_004325079.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5] gi|326682121|emb|CBY99737.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5] Length = 425 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 23/257 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + + +L+A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLQKEYFKKH----SKVLLALSGGLDSMFLYHLLSTYQKELG---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + S+ A ARE RY + K AT Sbjct: 59 QRNESDWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKDAGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + L+G+ + + D + I RP L ++D Sbjct: 115 LITAHHADDQVETILMRLIRGSRLR--HLTGIKEGQVVD-GIEIIRPLLNFHKKDFLP-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMK--KFQDLRVKVNNAVAMLI 238 I+ ED +N + + R R+R ++ +++ LK F + L Sbjct: 170 ----IAHFEDQTNQESTYFRNRIRNRYLPELEKENPRLKSALLDFGREISDYQATITELS 225 Query: 239 PKYLTVHMRSIIAISQD 255 + + + + SQ Sbjct: 226 KQIDVEDLNELFSYSQQ 242 >gi|264677341|ref|YP_003277247.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2] gi|262207853|gb|ACY31951.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2] Length = 336 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 27/315 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VA SGG+DS LL+A H+ R AI V H L+ A + R+ +C Sbjct: 28 PPLPLAVAFSGGADSSALLLACHARWPGR------VRAIHVHHGLQAAADEFQRHCEQLC 81 Query: 78 SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----------IMTAH 126 +R IA V + Q AAR+ RYA + + A+ + A Sbjct: 82 ARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ + R G+ L RP L + +R +L RN+ Sbjct: 142 HADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLEWFRPLLEVPGQALRDWLRLRNL 198 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 SW EDP+N D + R R+R + + F A +L + + Sbjct: 199 SWVEDPTNADPGYTRNRIRAQLLPVLEQVFPQFRSTFARSSAHCAQASQLLDQQAAADLL 258 Query: 247 RSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----KSGKRGC 301 + + L + L +LR G + P + ++M L G R Sbjct: 259 LVGVPPAIKALQGLSELRLGNVLRYWLRTEHG--TTPTAAQLAQLMAQLGVCTTRGHRIH 316 Query: 302 VSIGRVVIDRRANFL 316 + +GR ++R+ L Sbjct: 317 IKVGRGFVERQGASL 331 >gi|227873318|ref|ZP_03991580.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268] gi|227840833|gb|EEJ51201.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268] Length = 342 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 125/330 (37%), Gaps = 28/330 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + IL+A+SGG+DSM LL L + + SF A+ V H +R + A ++ + Sbjct: 17 QWIREGEQILLALSGGADSMYLLYFLKELQNHLSF---SLRAMHVQHGIRGDEAVEDATF 73 Query: 73 VSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-----TLIM 123 ++ V + + G+ AAR RY + E A A T I Sbjct: 74 SRQQAELYQVPFLEYTCSVPDYAEENKLGIEEAARTLRYKALKEEALRWQAESGRKTKIA 133 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH DDQ ET+ R G+SGM + +L + + RP L R+E+I L Sbjct: 134 LAHHMDDQAETILFHLIRGAGF--SGISGMKAEDLLSEAETTLLRPLLSLRKEEILKRLE 191 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVA 235 + I + ED +N D + R +R + + L + F + Sbjct: 192 ELGIPYREDSTNRDKSYARNYLRLEILPALEKINAGAVKHLLEAAELFSETEAYFQEKAT 251 Query: 236 MLIPKY----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 I +Y + + I + ++ + + + + G + G + Sbjct: 252 EWIKRYGERKESSTGKCISLSIPQLKKENALFRREIYKEAIFLLRGNTTEFGKLHYHGID 311 Query: 292 LFLKSGKRGCVSI-GRVVIDRRANFLWITR 320 LK G G +S+ V + L + + Sbjct: 312 RLLKRGNGGRLSLPKGVKAEVEQKRLLLEK 341 >gi|71898703|ref|ZP_00680872.1| PP-loop [Xylella fastidiosa Ann-1] gi|71731468|gb|EAO33530.1| PP-loop [Xylella fastidiosa Ann-1] Length = 435 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R +LVA SGG DS LL L S + R G AI + H L E A Sbjct: 5 FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 61 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + C++ I + S + AA H + AH DDQ Sbjct: 62 HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R + GL+ M + + RP L R + + Q+++ W ED Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 176 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250 SN D R +R +R V + LH + + + A A L+ V + ++ Sbjct: 177 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235 Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305 A+ + L L + G LP +ER +L + C + Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295 Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R L++ R P+ +W G + + + Sbjct: 296 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 350 Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389 + A+R +P + PL Sbjct: 351 PHPLRVRARRGGERLILPRRTHSHPL 376 >gi|237750957|ref|ZP_04581437.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879] gi|229373402|gb|EEO23793.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879] Length = 369 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 78/372 (20%), Positives = 157/372 (42%), Gaps = 32/372 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +++ L+A SGG DS L L KI+F +D+ R +KDEV Y Sbjct: 17 AILSKNKNLLAFSGGIDSTALFFVLME-------HKIEFDIAIIDYGKRSQSKDEVLYAK 69 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + + ++ AR RY + T + ++TAH FDD+LE Sbjct: 70 SLAKQYKKQCYTLISESITKD--FEHNARNIRYDFFHKIIITHDYHNLITAHHFDDRLEW 127 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +M+ +G + + ++++ ++ RPF+ +++I ++ NI + D S Sbjct: 128 FFMQLSCGAGLNTLLGFHDITERMIHNKVYYLVRPFITYTKQEILNYNHTNNIKYFIDTS 187 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N+D ++R R+ + + +KK F L + + ++ V + + I Sbjct: 188 NSDISYKRNLFRQQLSGLMNRDFINGVKKSFAYLEKERAR-----LYPHVVVCVDYNLFI 242 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + ++ T+ R+ + G Q ++R + LK+G CV G++VI + Sbjct: 243 CKSHIHEIHTIDMLTKRLGYIMSGKQ-----KDELQRTL--LKNGA--CVMGGKIVIAKN 293 Query: 313 ANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDSLIQIGPQS---YRKADVP 365 +F+++ +R L L + ++ + + I+I Q YR ++P Sbjct: 294 ESFIFVGIEIRWLIKAFLEKRREKYIQLPCNIKHLYNLIQKDSIKIPKQEREKYRIQNIP 353 Query: 366 SGIPPIIAQRAL 377 I P++ +L Sbjct: 354 PKIRPLLYINSL 365 >gi|290889686|ref|ZP_06552775.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429] gi|290480683|gb|EFD89318.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429] Length = 299 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 9/253 (3%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+A+SGG DS L L S+ + VDH LR + +E + + D + Sbjct: 23 KLLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRVDSANETKLIDDQFANR 79 Query: 81 RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + W K P +G+ AAR+ RY A + A I+ A DDQ ET ++ Sbjct: 80 GLCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKI 139 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + + + D + + RP L + +I + + ++ W ED +N D + Sbjct: 140 IRGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDY 199 Query: 200 E-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R ++R V L AL + + L ++ + S L Sbjct: 200 TSRNQIRNVV----LPALKQINPNSARNIASFAEQIREVNENQLIEMLKIWLHDSIGFLP 255 Query: 259 IDSTLLFYLLRVS 271 I + L R+ Sbjct: 256 IKRSQLEQFERLL 268 >gi|313673407|ref|YP_004051518.1| tRNA(ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312940163|gb|ADR19355.1| tRNA(Ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 420 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 23/232 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSD 75 + + ++VA SGG DS+ LL L+ + + I A V+H +R + + + Sbjct: 23 LKNSKVVVAFSGGRDSVALLHYLYLISKN---YNIDLFACHVNHGIRGEMGERDENFCKS 79 Query: 76 VCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + I + + + AAR+ RY + E + ++A I TAH FDD Sbjct: 80 FCGKFDIPLFIKKIDVPSYVRRFNLSVEDAARKLRYQALFEVLQKLDADYIATAHHFDDI 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET +++ A + +D + + RPF R I ++ + + +D Sbjct: 140 VETFFVKVFTGSAIYNL--------KGFDRSDRVLRPFANVERIQIEKYIKHNKLEYVDD 191 Query: 192 PSNTDDRFERVRVRRFVRDID-------LHALYLKMKKFQDLRVKVNNAVAM 236 +N + R VR + L+ +Y ++ +L+ ++N +A Sbjct: 192 ETNFSSDYVRNWVRLKIIPEIRNYNRGYLNNIYSIQEQSSELKNFLHNHLAD 243 >gi|307711226|ref|ZP_07647648.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321] gi|307617188|gb|EFN96366.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321] Length = 425 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 35/270 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A +++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYKKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRVESDWEEQELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPP-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F++ + + N + Sbjct: 170 ----IFHFEDISNQENHYFRNRIRNS----YLPELEKENPRFRNAILSIGNEI------- 214 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + +AI++ NID L LL S Sbjct: 215 ----LDYDLAIAELSKNIDVENLDQLLSYS 240 >gi|205371981|ref|ZP_03224799.1| cell cycle protein MesJ [Bacillus coahuilensis m4-4] Length = 456 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 18/241 (7%) Query: 8 SVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 VR F+ R L+ H+LV VSGG+D ++ L +++ + ++K + ++VDH LR Sbjct: 6 KVRQFIDKERLLMGEEHVLVGVSGGAD---SMMLLSMLMALQKEKELKITVVTVDHMLRG 62 Query: 64 ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 E + ++ +V C + I+ V + + L AR+ RY E K + A Sbjct: 63 EESYQDLEFVRAYCEQHGISFVGKQVNVKHALTAQKGSLQQVARDMRYGAFLETLKAVKA 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T++ DDQ+ETV M R KG G+ D + RP L ++DI S Sbjct: 123 TVLALGQHGDDQVETVLMGLTRGGTSKGYGIPITRD----FHGYPLIRPLLPLTKDDIYS 178 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDI--DLHALYLKMKKFQDLRVKVNNAVAM 236 F+ I + EDPSN + + R R R + + + ++ +F + + ++ + Sbjct: 179 FVQHHRIPYREDPSNQKEDYTRNRFRLHTLPFLKSENPKVHEHFLRFSKEQREDDDYLWE 238 Query: 237 L 237 L Sbjct: 239 L 239 >gi|78187463|ref|YP_375506.1| MesJ protein [Chlorobium luteolum DSM 273] gi|78167365|gb|ABB24463.1| MesJ protein [Chlorobium luteolum DSM 273] Length = 332 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 19/239 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + +LVAVSGG+DSM LL +V + + + + LR + + + Sbjct: 22 RLVGQGDRVLVAVSGGADSMALLTLFIAVQAALG---CTLAVVHCNFGLRGAESDADEAF 78 Query: 73 VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + + + V + + + AR RY E + T + T H Sbjct: 79 VRECARLMGLPCFVRQFDTLASSVAARRSVEEEARVLRYGYFQEIIEREGYTKVATGHHV 138 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET+ R + + I RP L R +I +L Q+ + Sbjct: 139 GDNAETMLFNLFRGVTLPSL-------RGIRSRRGHIIRPLLFMHRAEIEEYLKQQGTGY 191 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLT 243 D +N DDR++R +R V + + M++ + ++ + + + L Sbjct: 192 RTDATNADDRYDRNFIRNRVIPLVEERFHGRFLPSMQRLSEQSGELEAFLELYFERLLA 250 >gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris CGA009] gi|61216538|sp|Q6NAQ6|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009] Length = 346 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 97/336 (28%), Positives = 148/336 (44%), Gaps = 23/336 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ R F PA I++AVSGG DS+ L+ G + ++VDH L Sbjct: 9 VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMWLAARWRKALKRGP-ALAVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + + L + H + W KP TG+ AAAR ARY L+++ AKT+ A+ + Sbjct: 67 RPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLAKAAKTLGASHV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M I D + ++RP L + + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLIATLA 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + I++ DPSN D RF R R+R + + + +R +A L+ Sbjct: 184 KARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARSLVRLAVRAARADAALELMTDGA 243 Query: 243 TVHMRSIIAISQ-------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + S+ A S+ L + + + LL + + G + P +E + L Sbjct: 244 EQFLASLDAGSERPGVNARAFLGLAAEIQIRLLLRTLSRHGHEG-PPELGKVEALAEALS 302 Query: 296 SGK----------RGCVSIGRVVIDRRANFLWITRA 321 R ++ VI + L I A Sbjct: 303 QAAARRPQAAAKIRLKQTLAGAVISLTGDRLVIVPA 338 >gi|290969234|ref|ZP_06560759.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str. 28L] gi|290780740|gb|EFD93343.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str. 28L] Length = 458 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 21/293 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG DS+ LL L R I+ + ++H +R A DE R V + Sbjct: 21 VLAACSGGPDSLALLDVLARC---RERLHIEVAVAYINHGIRAAAFDEERRVQQAAAARG 77 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + + L AARE RY L+ + + I A I AH +DQ ETV Sbjct: 78 CPCYIRRTAVPALARRRKQSLETAAREERYRLLRDVQRQIRAQSIAVAHHQNDQAETVLW 137 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GL+GM I RPFL R +I + +R++ C D +N + Sbjct: 138 HLVRGSGL--TGLAGM-----RPRREKIIRPFLCVTRAEITDYAARRHLHPCHDETNDEL 190 Query: 198 RFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSII 250 R ++R F+ ++ + + ++ + + + V I+ Sbjct: 191 HCTRNKLRLQYLPFLAQLNPAIIADLNRLAAVVQAEDDVLRQQTEEAYRRTAQVRAEGIV 250 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + + L L+R + G ++ +E V L + Sbjct: 251 LSKTRLAEQPTALQRRLIRRAYEALTGHMTGLSLEQVETVRHLLDKEPGKRFA 303 >gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter sp. ELB17] gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter sp. ELB17] Length = 212 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 12/203 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R R L + +A SGG DS LL ++ I SA+ ++H L+ A + Sbjct: 16 LRDLARQLPQHDRLCIAFSGGLDSSLLLHLFAAITP----ASIALSALHINHQLQPNAAE 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + DVC+RL + VVS ++ GL AAR ARY + ++ + L++ A Sbjct: 72 VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRA--DELLLLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQLETV R R G+ + ++RP L R + ++ Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALCARA---LARPLLEFSRAQLEAWAEGAG 186 Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208 + W EDPSN+D RF+R +R V Sbjct: 187 LPWMEDPSNSDQRFDRNYLRNSV 209 >gi|307153268|ref|YP_003888652.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822] gi|306983496|gb|ADN15377.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822] Length = 322 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 19/312 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +LVAVSGG DS+ L ++ +S + + + DH T +V Sbjct: 20 LPKKERLLVAVSGGQDSL---CLLKLLVDLQSKWEWELAIAHCDHGW-PTDAGMSDHVQQ 75 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + I + + + + K AAAR+ RY + E A +L++TAHT D+ ET Sbjct: 76 IAQSWGIPYYLKTAHHLKET---EAAARKWRYQALIEIATEQGFSLVVTAHTKTDRAETF 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS + N+W+ RP L R + F Q N+S ED N Sbjct: 133 LYNLIRGAGTDG--LSSLTWVRSLSENIWLVRPLLEISRSETYQFCQQFNLSIWEDILNQ 190 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF----QDLRVKVNNAVAMLIPKYLTVHMRSI-I 250 + ++ R R+R + +++K ++ + ++L + I Sbjct: 191 NLKYARNRIRHELLPYLQTHFNPQVEKALIQSAEILRSEGEYLEETAQQWLEKSLSEDKI 250 Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSIGRVV 308 AI + IL I L ++R + P + +E ++ + + + S+ + Sbjct: 251 AIHRQILRGIPLALQRRVMRRFLTTVLSKA--PNFEQIEALVNLINAPNRSSTFSLPGTI 308 Query: 309 -IDRRANFLWIT 319 I+ + ++ ++ Sbjct: 309 TIEVQGEWIRVS 320 >gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58] gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58] Length = 318 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 23/265 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+ SGGSDS+ L L S+ KI F+A+ VDH RE + Sbjct: 11 KRLEAFFSSLDRKKSYLLGFSGGSDSLFLFYVLKSL-------KINFTAVHVDHGWRECS 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++E + + + C R +I++ K + L AAR+ARYA + N + + A Sbjct: 64 REEAKALKEFCHREKISYIGHRLSPEEKGERDLENAARKARYAFFYQLCVQQNFSGVFLA 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--ILYDLNLWISRPFLRCRREDIRSFLLQ 183 H +DQ ET+ R +G LS + + + + RP L + + S L + Sbjct: 124 HHANDQAETLLKRVL-----EGAHLSNLKGMTVSSFYQGMQLLRPLLHIPKARLMSLLHR 178 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH--------ALYLKMKKFQDLRVKVNNAVA 235 IS+ D +N D+R+ R R+R+ + L+ ++ ++L + + Sbjct: 179 EKISYISDETNEDERYLRARMRKKLFPWLEEVFGKNISSPLFALAEESKELAEYMESQTE 238 Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260 + K ++ IS+ ++ Sbjct: 239 PFLSKVTCQQGGQVLPISKGLIQQP 263 >gi|156740870|ref|YP_001430999.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii DSM 13941] gi|156232198|gb|ABU56981.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii DSM 13941] Length = 676 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 36/335 (10%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 S ++SVR +R ++ A ++VAVSGG DS+ LL AL + D + + +DH Sbjct: 3 SLVDSVRAMLRRYRMIMPGAPVVVAVSGGPDSLCLLDALVHLRDDLA---CDLHVVHLDH 59 Query: 61 CLRETAKDEVRYVSDVCSR-LRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115 LR + L + +V + + L AA R ARY L++ A Sbjct: 60 RLRGAEAAAEAAFVAETAACLNLPCTVEAVDVRALALERNLNLHAAGRLARYRLLARVAL 119 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------------- 160 TI A + TAH DDQ ETV + R GL GM + ++ Sbjct: 120 TIGAQAVATAHHADDQAETVLLHLVRGAGV--AGLRGMRPVVAWEEWRTFAGDPSLQADH 177 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DL 213 L + RP L R I ++ +R ++ DPSN D R+ R R+R+ V + Sbjct: 178 LRPRLIRPLLDVPRARIEAYCTERGLTPRRDPSNADRRYLRTRIRQDVLPVLTALNPQIA 237 Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 AL ++ + + + I+ + ++ L LR + A Sbjct: 238 TALGRTAADCAEVADFLEQELDRAWLTLVVARANRIVFDGRRWRDLPPALQHAALRRAYA 297 Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + GG +L G + R + G + + V Sbjct: 298 LLGGSDTL-GRDDVVRACDAVGRGVGKRIELPGGV 331 >gi|295425667|ref|ZP_06818354.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664] gi|295064683|gb|EFG55604.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664] Length = 420 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 32/377 (8%) Query: 8 SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + F + + +++A SGG DSM LL L+ + +F DH LR Sbjct: 2 KIELFFKQHQIKLNNKKLVIAASGGPDSMALLDMLNELRKSHNF---SLIVAHFDHQLRV 58 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ E +++ C + + W K +P+TG+ AAAR RYA +S+ A ++ Sbjct: 59 DSQKETELLTEYCHSHNLPLAKGVWLKKEQPRTGIEAAARHFRYAFLSQVVAQYQADYLL 118 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD LE + ++ R + M + + RP L + ++ + Q Sbjct: 119 TAHHGDDLLENILLKFIRSGNPQEMNSLQAVGKM---HGTALLRPLLSTSKAELLEYDQQ 175 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 +I++ ED +N D R R+R V + ++ LR + V + Sbjct: 176 HHIAFIEDETNAKDDTLRNRLRHHVVPLLKKENSHLLENA--LRYSDDEKVLTALADEKV 233 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + I L L + A ++ KR Sbjct: 234 AEIGRPERFLDQAYRIKGEALLQLDQRQRAYFWQN------------FIWQTWHKRCSHY 281 Query: 304 IGRVVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP---- 356 + + + ++ +R P ++ EE T D ++ + SL IG Sbjct: 282 LTGYNLRLYQKYYYLWPQKLLLRQEPKVVRAEEEFTFRDHKFMLSVVEHSLPLIGDFWSD 341 Query: 357 -QSYRKADVPSGIPPII 372 ++ A +P+G + Sbjct: 342 EHEFKIASLPAGSKLQL 358 >gi|71274509|ref|ZP_00650797.1| PP-loop [Xylella fastidiosa Dixon] gi|71900338|ref|ZP_00682473.1| PP-loop [Xylella fastidiosa Ann-1] gi|170730758|ref|YP_001776191.1| cell cycle protein [Xylella fastidiosa M12] gi|71164241|gb|EAO13955.1| PP-loop [Xylella fastidiosa Dixon] gi|71729913|gb|EAO32009.1| PP-loop [Xylella fastidiosa Ann-1] gi|167965551|gb|ACA12561.1| cell cycle protein [Xylella fastidiosa M12] Length = 435 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 75/315 (23%), Positives = 115/315 (36%), Gaps = 15/315 (4%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F R +LVA SGG DS LL L S + R G AI + H L E A Sbjct: 5 FPRIPDPCVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNEHADAWTA 61 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + C++ I + S + AA H + AH DDQ Sbjct: 62 HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET +R+ R + GL+ M + + RP L R + + Q+++ W ED Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHTRAQLLDYAQQQHLDWIED 176 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250 SN D R +R +R V + LH + + + A A L+ V + ++ Sbjct: 177 SSNVDLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235 Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305 A+ + L L + G LP +ER +L + C + Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295 Query: 306 RVVIDRRANFLWITR 320 I R L++ R Sbjct: 296 HTEIRRWRLRLYLHR 310 >gi|299533879|ref|ZP_07047246.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44] gi|298718163|gb|EFI59153.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44] Length = 336 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 27/315 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + VA SGG+DS LL+A H+ R AI V H L+ A + R+ +C Sbjct: 28 PPLPLAVAFSGGADSSALLLACHARWPGR------VRAIHVHHGLQAAADEFQRHCEQLC 81 Query: 78 SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----------IMTAH 126 +R IA V + Q AAR+ RYA + + A+ + A Sbjct: 82 ARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ+ET+ + R G+ L RP L + +R +L RN+ Sbjct: 142 HADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLEWFRPLLEVPGQVLRDWLRLRNL 198 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 SW EDP+N D + R R+R + + F A +L + + Sbjct: 199 SWVEDPTNADPGYTRNRIRAQLLPVLEQVFPQFRSTFARSSAHCAQASQLLDQQAAADLL 258 Query: 247 RSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----KSGKRGC 301 + + L + L +LR G + P + ++M L G R Sbjct: 259 LVGVPPAIKALQGLSELRLGNVLRYWLRTEHG--TTPTAAQLAQLMAQLGVCTTRGHRIH 316 Query: 302 VSIGRVVIDRRANFL 316 + +GR ++R+ L Sbjct: 317 IKVGRGFVERQGASL 331 >gi|289166919|ref|YP_003445186.1| MesJ/Ycf62 family protein [Streptococcus mitis B6] gi|288906484|emb|CBJ21314.1| MesJ/Ycf62 family protein [Streptococcus mitis B6] Length = 425 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 35/270 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A +++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRVESDWEEQKLRKLAAEAELPIYISNFSGEFS----EARARHFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDISNKKNHYFRNRIRNS----YLPELEKENPRFRDAILSLGNEI------- 214 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + +AI++ NID L LL S Sbjct: 215 ----LDYDLAIAELSKNIDVENLEQLLSYS 240 >gi|253582314|ref|ZP_04859537.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725] gi|251835853|gb|EES64391.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725] Length = 444 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 138/335 (41%), Gaps = 30/335 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++ +E R +V I+V SGG DS+ L+ L + +F + ++H Sbjct: 3 LYREILEKNRK-DNLIVENDKIVVGFSGGPDSVFLVEMLMKLKKSINF---DIVLVHINH 58 Query: 61 CLR-ETAKDEVRYVSDVCSR--LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAK 115 LR E + + ++ + + L++ ++ + GL A R+ARY L E + Sbjct: 59 LLRGENSDGDEKFSLEYGKKKGLQVFSRKINITVLGKKLGLTLEEAGRKARYDLFKEILR 118 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 A I AH DDQLET R R +G+ + I+ +++I RP ++ Sbjct: 119 ETGANKIALAHNKDDQLETFMFRLTRGAGLEGL------EGIIAKRDMYI-RPISEIYKK 171 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVN 231 DI +L NIS+ D +N ++ F R +R + K K + +VN Sbjct: 172 DIIKYLNDNNISYRIDETNFENEFTRNSIRLDLIPFIEKRYNPKFKDKLYSLIEEIREVN 231 Query: 232 NAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + KY+ + SI + Q D + L+ YL + ++ + Sbjct: 232 RVLEIKFEKYMVNNKLSIEKLKQLDKYLLSKVLIQYLYSYGIEV--------SRNKIQLI 283 Query: 291 MLFLKSGKRGCVSIGR-VVIDRRANFLWITRAVRN 324 L G +S+ R ++ + +FL + + ++ Sbjct: 284 EDILHKGGSKDISLNREFILKKDYDFLTVEKNIKK 318 >gi|298493031|ref|YP_003723208.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708] gi|298234949|gb|ADI66085.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708] Length = 324 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 124/323 (38%), Gaps = 21/323 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I + F R+ +LVAVSGG DS+ + +L + K + DHC RE Sbjct: 14 IRARHLFARN----QKLLVAVSGGQDSL---CLIKLLLDLQPKWKWSLAIAHCDHCWRED 66 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ +V ++ + + N A+AR RY +++ A+ N I+T Sbjct: 67 SQANAHHVENLAHNWHTPFYLETATNPVKN---EASARNWRYQALTKIAEVHNYQYIVTG 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT D+ ET+ R G L + + N+ + RP L R F + N Sbjct: 124 HTASDRAETLLYNLMRGTGADG--LQALTWQRPLNENIILVRPLLEVTRSQTEQFCQEFN 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTV 244 + +D +N + ++ R R+R+ + +++ + V L + Sbjct: 182 LPIWQDSTNQNLQYARNRIRQELIPYLKENFNPQVESNLAQTAELLLAEVEYLEQTAHQL 241 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ------ISLPGYRSMERVMLFLKSGK 298 + + DIL ++ +L + Q P + +E++ + + + Sbjct: 242 RLEASEKGENDILQLNRPILKRVPLALQRRVMRQVLQKILPDAPNFEHIEKLRVLITAPN 301 Query: 299 RGCV--SIGRVVIDRRANFLWIT 319 R G + + ++++I+ Sbjct: 302 RSQTDPFPGGAIAQVQGDWIFIS 324 >gi|83816193|ref|YP_445830.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855] gi|83757587|gb|ABC45700.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855] Length = 468 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 78/399 (19%), Positives = 135/399 (33%), Gaps = 30/399 (7%) Query: 6 IESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++V F +L+ +LVA SGG DSM L L + + A+ V++ LR Sbjct: 6 VDTVAAFSDRHALLDEGPVLVAASGGVDSMTCLSVLRRL-------DVDVHALHVNYGLR 58 Query: 64 ETAKDEVRYVSDVCSRLR--IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 A + V C + SVV+ L AAAR RY ++ A I Sbjct: 59 AGADGDEALVRRWCHEQSPAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEI 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++ T H DDQ ET+ + R +G+ + D ++ + RP L RR+ I Sbjct: 119 GAPVVATGHHRDDQAETLLLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAI 178 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ + W DP+N ++R +R + + V Sbjct: 179 EAYAESMGLPWRTDPTNQRHDYDRGVIRTEILPRLEAHFEGATDALARSADLMQEYVDQA 238 Query: 238 IPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + L + A+S + L + L + A + E + Sbjct: 239 LRPALKRRMGRAYTDHEAGGALSVEALREAPPVWRRRLLLEALRRALPTAPYSRAVAEEL 298 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL----PTLILYPEETTVWDGRYQFQN 346 +++ + +G + R L PT I + + GR + + Sbjct: 299 EALVEAQVGRRMEVGTGTVWRERGRLRFVPDAATPDPLSPTPIDWGTPVAIPQGRLRVEL 358 Query: 347 LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385 + A + AL+ P EG Sbjct: 359 CDGRPASLASGPPHLAYADADR----LWTALTVRPWAEG 393 >gi|325917349|ref|ZP_08179566.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325536436|gb|EGD08215.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 434 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 36/359 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P +L+A SGG DS LL AL ++ + R G A+ V H L A + Sbjct: 12 PPPGPVLIAYSGGMDSGVLLHALAALPAYRDRG---LRALHVHHGLHADADAWAAHCQRT 68 Query: 77 CSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C+ L++ +V + ++ GL AAAR+AR+ +E A + AH DDQ ET Sbjct: 69 CAGLQVPLQIVRVQVARDRGLGLEAAARQARHTAFAEILAP--AEWLALAHHRDDQAETF 126 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R G+ + + RP L R D++++ + W +DPSNT Sbjct: 127 LLRALRASGPDGLAAMRIQRPFA---QGILWRPLLAHARADLQAYARLHALHWIDDPSNT 183 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R++R +R V + +A +L L A+ D Sbjct: 184 DARYDRNFLRTQVLPLLQQRWPQAAAALARSAQLSADASDLLQHDDL--------AVLPD 235 Query: 256 ILNIDSTLLFYLLRVSAAICGGQ-------------ISLPGYRSMERVMLFLKSGKRGCV 302 +L + L +LLR A + + G ++ER + ++ C Sbjct: 236 LLTENGALDLHLLRAQPAARRPRLLRAWAAAAGAPPLPAQGVAALEREIATHAPDRQACF 295 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYR 360 + ++ + R + L++ PT + + WDG + + + GP R Sbjct: 296 AWQQIQVRRWRHCLYLLG-----PTPPWPAQWSAHWDGAQPLSLPDGAQLHLHGPAGLR 349 >gi|327314588|ref|YP_004330025.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289] gi|326945281|gb|AEA21166.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289] Length = 456 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 74/390 (18%), Positives = 146/390 (37%), Gaps = 59/390 (15%) Query: 6 IESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR F+ L+ + LVA+SGG+DS+ LL+ L + + A+ + L Sbjct: 2 LNKVRRFIAFEHLLQADRLYLVALSGGADSVCLLLCLKEL-------GYRIEAVHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E ++ + +Y ++C R I + ++ + + AAR RY + +T+ Sbjct: 55 RGEESQRDEQYCQELCVRENIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + T H +D +ET+ + R G+ + + RP L R++I Sbjct: 115 AADAVCTGHHKEDSVETILINLVRGTGLNGL-------MGIRPRKGGVVRPLLCVTRQEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L R++S+ D +N D R ++R + A+ ++ V Sbjct: 168 EQYLRSRSVSFVTDSTNLVDDVVRNKIRLNILPQLAEINPSVNDAVLTAANHLSEVDAIV 227 Query: 231 NNAVAMLIPKYLT-----------VHMRSIIAISQDILN---IDSTLLFYLLRVSAAICG 276 +++ M + K + + I ++ + LLF++L+ Sbjct: 228 RDSLNMALDKAVRPIGSTGPGNSFYPLEHTFKIDLKVVRHFPSPAYLLFHILKPLG---- 283 Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 P + V L+ + + + L + V P ++ PE Sbjct: 284 ---FTPS--QIAEVTAHLEGQPGQVWASSTHELTHDRDSLLVMPVVAEKPRELIIPET-- 336 Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 GRY + I++ ++ A PS Sbjct: 337 ---GRYVYD--DGLSIRLTKENRSPASSPS 361 >gi|325856881|ref|ZP_08172379.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A] gi|325483254|gb|EGC86231.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A] Length = 456 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 29/253 (11%) Query: 6 IESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + VR F+ L+ + LVA+SGG+DS+ LL+ L + + A+ + L Sbjct: 2 LNKVRRFIAFEHLLQADRLYLVALSGGADSVCLLLCLKEL-------GYRIEAVHCNFHL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R E ++ + +Y ++C R I + ++ + + AAR RY + +T+ Sbjct: 55 RGEESQRDEQYCQELCVRENIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETL 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + T H +D +ET+ + R G+ + + RP L R++I Sbjct: 115 AADAVCTGHHKEDSVETILINLVRGTGLNGL-------MGIRPRKGGVVRPLLCVTRQEI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +L R++S+ D +N D R ++R + A+ ++ V Sbjct: 168 EQYLRSRSVSFVTDSTNLVDDVVRNKIRLNILPQLAEINPSVNDAVLTAANHLSEVDAIV 227 Query: 231 NNAVAMLIPKYLT 243 +++ M + K + Sbjct: 228 RDSLNMALDKAVR 240 >gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1] gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1] Length = 324 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 20/333 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 ++P SV ++ PA + V SGG+DS LL+ L + A VDH Sbjct: 1 MITPFNSVAGRMQMDGLPAEVAVGWSGGADSTALLLMLQQ-------QGYRVQAWHVDHG 53 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 RE++ E +++ I V + A AR+ RYA + ++ T Sbjct: 54 WRESSIKETELLAEKARGWEIELQVARLPAPSGR-NREAEARKGRYAQFEQWSEATGITT 112 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + H DDQ ETV MR + G GM + L I RP L+ + ++++ L Sbjct: 113 LCLGHHRDDQAETVCMRMLQGAGISGC--RGMQQRRRHGR-LDIFRPLLQVKAGELKAAL 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I+W EDPSN D R R+R+ + + L+L+ + + + ++ A Sbjct: 170 RAADINWLEDPSNNDMTIWRNRIRQGLFPAMQRAGVSPSELFLRWQVQAERLGQQIDSEA 229 Query: 236 MLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 L+ +++ + + + S L + + +L+ A G+ PG R + + Sbjct: 230 QLLLGDISLRNQGVRSASVPWLIWSATAAPIRVRMLQKMMAFVLGEGVTPGRRHILMIEA 289 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325 + + G G + + R + R L + R +L Sbjct: 290 WTQRGGHGGLDLSRCRLLRSRKDLHLRRTAADL 322 >gi|260062776|ref|YP_003195856.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501] gi|88784344|gb|EAR15514.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501] Length = 439 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 24/308 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75 + + L+A SGG DSM L ++F + LR A + + +V + Sbjct: 16 LMGSSFLLACSGGLDSMVLAHLCKD-------AGLEFELAHCNFNLRGEASESDQEFVRE 68 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH-AKTINATLIMTAHTFDD 130 +LRI + S+ ++ + + AAR RY + A + I+TAH DD Sbjct: 69 TADKLRIKTHIKSFDTIGYANQNKVSIQMAARALRYEWFDQLTASENHLRYIVTAHHADD 128 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R +G+ + I RP L RED+ ++ I+W E Sbjct: 129 ALETFLINLGRGSGLEGL-------CGIPARTANIRRPLLAFSREDLEAYAETARIAWRE 181 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN++ R+ R R+R V A + +F + ++ + A LI +Y+ R + Sbjct: 182 DASNSETRYLRNRLRHEVIPALKAASGGFLDQFGNSVRHLDGSRA-LIERYMDGVFRKVS 240 Query: 251 AISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 S +L L L A + ++++ R++ ++G+ R++ Sbjct: 241 RESDGVLVFSIPALRALHPREAHLHELFRDYGFTDWKALGRLLE-SETGREVQSPTHRLL 299 Query: 309 IDRRANFL 316 R L Sbjct: 300 KHRDELLL 307 >gi|82702932|ref|YP_412498.1| hypothetical protein Nmul_A1809 [Nitrosospira multiformis ATCC 25196] gi|82410997|gb|ABB75106.1| conserved hypothetical protein [Nitrosospira multiformis ATCC 25196] Length = 472 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 70/347 (20%), Positives = 125/347 (36%), Gaps = 31/347 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + H+ +A+SGG ++ L ++ S ++ SA+ V+H + A + Sbjct: 23 QVPAGDHLTIALSGGV---DSVVLLDLLVPLASQMQLPLSAVHVNHGISPNADKWSEFCR 79 Query: 75 DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C I + K ++ P L AAARE RY + + + I+ A DDQ E Sbjct: 80 NLCQFRNIPLEIARVKVAQGPGISLEAAAREERYRIF----RGLQTDYIVLAQHLDDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN--------------LWISRPFLRCRREDIRS 179 T+ ++ R KG+ + T+ ++ + RP L R +I Sbjct: 136 TLLLQLLRGAGVKGLSAMPVVRTVRKEMGETVPVNSVPALEGRPRLLRPLLDVSRREIED 195 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + + + W D SN + F R +R + + F + A A+L Sbjct: 196 YARKHALRWITDESNDEISFGRNFLRHELFPLMEKRFPAYRTTFLRASRHMAEASALLDE 255 Query: 240 KYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK- 295 R + +D+ + LLR + A + LP +E ++ L Sbjct: 256 LAEVDSARCAVPGKLHVEDLRKLGFPRARNLLRYTLA--QHAVVLPSTVKLEEILRQLVS 313 Query: 296 --SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 S + V G I + I R + + I W G Sbjct: 314 SYSDTKLHVVFGNTEIRCFRGRVHI-RKAQTIVEAIPEARWHLPWRG 359 >gi|42518368|ref|NP_964298.1| hypothetical protein LJ0281 [Lactobacillus johnsonii NCC 533] gi|61216579|sp|Q74LA3|TILS_LACJO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41582653|gb|AAS08264.1| hypothetical protein LJ_0281 [Lactobacillus johnsonii NCC 533] Length = 431 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 10/227 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A SGG DS+ LL L + L + S + +DHCLR+ + E + + + Sbjct: 15 IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S L++ W PQ G+ A ARE RYA +++ + ++TAH DD +E + Sbjct: 72 TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGRKYQTDYLLTAHHGDDLIENI 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R M + + ++ + RP ++ ++++ + ++ + ED +N Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNF 188 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +D R R+R V + + L F + ++ + L Sbjct: 189 EDDTLRNRLRHHVVPLLKKETSHLVKNANHFSESVALLSKCQSDLFD 235 >gi|187777491|ref|ZP_02993964.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC 15579] gi|187774419|gb|EDU38221.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC 15579] Length = 468 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 126/323 (39%), Gaps = 23/323 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77 I+V VSGG DSM LH + + +IK ++H +R + + +YV + C Sbjct: 19 DKIIVGVSGGPDSM---CLLHMLCLLKDELRIKDIYVAHINHGVRGAESDADEKYVENFC 75 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + +A REARY + K + A I TAH +DQ E Sbjct: 76 YMNNLGFFSKTIDMNKMAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR R G GL G+ ++I RP + RE+I + + ++ D + Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDGVYI-RPLINVLRENIEYYCEKYKLNPRIDKT 189 Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---M 246 N + R ++R +++D + + +F ++ K N+ + + ++ Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNSYLEEVSKDKFQIYCTKK 249 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIG 305 + I + ++ +LR + +++ ++ L L + + Sbjct: 250 TQRVIIDKRAFLEHESISTRILREVILYINKNLYNLEMKNIYDILELSLNTTGKFINLPN 309 Query: 306 RVVIDRRANFLWITRAVRNLPTL 328 + + + + + ++ + Sbjct: 310 NIRAENIYGDIHLYKECNDINEI 332 >gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301] gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301] Length = 389 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 155/379 (40%), Gaps = 38/379 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V VSGG+DSM L + S +R + A DH LR + DE + L Sbjct: 12 RVAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPVSADEASLTGRRLAAL 68 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + ++ + P L A AR+AR+A ++ A+ ++ H DQ E MR+ Sbjct: 69 GIGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAA 127 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R GL+GM D ++ I RP L +R FL R I W EDPSN D RFE Sbjct: 128 RGP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFE 182 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 RVRVR R L L D R VA ++ + +++ + L ++ Sbjct: 183 RVRVRATRRQAALVPPSLD----ADRRAAAERDVAEILVRDVSLRPEGWAIVRAASLPVE 238 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI---DRRANFLW 317 + L V + GG P ++ER+ L+ ++G V I R Sbjct: 239 A------LAVLFRVLGGAAYPPARAALERLAPELRPA-----TLGGVRIMAAGRHGPGWL 287 Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQN----------LSDSLIQIGPQSYRKADVPSG 367 + R + VWDGR++ ++ L DS +IG +S A + Sbjct: 288 LVREAAAC-APPVAAVRGAVWDGRFRVRDVPPGARTIGALGDSAAEIGRRSGLPAALRRT 346 Query: 368 IPPIIAQRALSSMPSKEGG 386 +P + S+P GG Sbjct: 347 LPAFFGGDGVLSVPHLAGG 365 >gi|213969135|ref|ZP_03397274.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1] gi|213926133|gb|EEB59689.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1] Length = 455 Score = 187 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L +A Sbjct: 40 VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 98 FESVRVKV-EPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 155 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 212 LRSQVLPLLTSRWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 271 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + R+S A LP + R + + R Sbjct: 272 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 331 Query: 314 NFLWITRA--VRNLPTLILYPEETT 336 +W A R + + + T Sbjct: 332 GCIWWLPAGWERTCSEAVNWADPHT 356 >gi|322412927|gb|EFY03834.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 428 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 112/283 (39%), Gaps = 21/283 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVSGG DSM LL LH + +I ++H R ++ E Y+ + Sbjct: 20 HRRVLIAVSGGVDSMNLLHFLHLFQENL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + ++ T AAR+ RY + + + ++TAH DDQ ET+ MR Sbjct: 77 NHSVPIYISHFE----GTFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL ++D+ NI ED SN + Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLPFSKDDLP------NIFHFEDTSNEETT 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R RVR L L + + ++ +L + + + I + Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLNQLAIENQLLFQAFTELTTKITITHLAEFRA 239 Query: 259 IDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 +++ ++LL+ Q+ + + ++ K G Sbjct: 240 QTASVQYFLLQDYLENFPDLQLKKSQFNQLLHLLQKAKQGNYP 282 >gi|227509310|ref|ZP_03939359.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191240|gb|EEI71307.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 478 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 8/218 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++VAVS G DSM LL L + + VDHCLRE +K E ++ CS Sbjct: 30 DQPVVVAVSTGIDSMTLLYLLEHL----DQCSPQIIVAYVDHCLREQSKRETVFIQQYCS 85 Query: 79 RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + W + PQ G+ AAARE RY K AT+++TAH DD ET+ M Sbjct: 86 DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLM 145 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R + L G+ + + RP L +++I F +I W ED +N D Sbjct: 146 KLVRGGQIE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNRDL 202 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +R R R + +K F D ++ + Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLKHFVDYSKQLKTLIE 240 >gi|28868757|ref|NP_791376.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato str. DC3000] gi|28851996|gb|AAO55071.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 455 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 106/308 (34%), Gaps = 18/308 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L +A Sbjct: 40 VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 98 FESVRVKV-EPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 155 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 212 LRSQVLPLLTSIWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 271 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + R+S A LP + R + + R Sbjct: 272 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 331 Query: 314 NFLWITRA 321 +W A Sbjct: 332 GCIWWLPA 339 >gi|261880480|ref|ZP_06006907.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella bergensis DSM 17361] gi|270332819|gb|EFA43605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Prevotella bergensis DSM 17361] Length = 455 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 128/328 (39%), Gaps = 40/328 (12%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81 LVA+SGG+DS+ LL L + A+ + LR + + + +C ++ Sbjct: 24 LVALSGGADSVALLCVLKRL-------GYHIEAVHCNFHLRGKESMRDEDFCVALCEKMN 76 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + + Q + AARE RY + K ++A I AH DDQ+ETV + Sbjct: 77 MTLHRIHFDTTTYATLHQISIEMAARELRYGYFEQLRKDLSADDICVAHHRDDQVETVLL 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL G+ + N + RP L R+++ S+L + D SN + Sbjct: 137 NLVR-----GTGLVGLQGMKPRNGN--VVRPMLAVSRDEVESYLNSIEQDYVTDSSNLIN 189 Query: 198 RFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R ++R + + L L +K + + + N + + + + R ++ Sbjct: 190 DVMRNKLRLDIIPL-LEELNPSVKASVFRMTENLGEANKLMDEALQNNIALIRRDNMSYD 248 Query: 254 QDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR--VV 308 L S +L+ +L M ++ G+ G G V Sbjct: 249 LKTLRKLVSPSYVLWSVL---------NKYGFNRSQMFEILSH--EGRAGQWETGEYVAV 297 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT 336 DR ++ ++ P+++ PEE Sbjct: 298 ADRERLDIFTAKSWAFKPSVLRIPEEGV 325 >gi|15902054|ref|NP_357604.1| hypothetical protein spr0010 [Streptococcus pneumoniae R6] gi|116516781|ref|YP_815434.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39] gi|61217356|sp|Q8DRP9|TILS_STRR6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|122279568|sp|Q04N53|TILS_STRP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|15457538|gb|AAK98814.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077357|gb|ABJ55077.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39] Length = 425 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 128/317 (40%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET++MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ F + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKFKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|289522999|ref|ZP_06439853.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503542|gb|EFD24706.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 469 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 108/302 (35%), Gaps = 29/302 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 ++ +SGG DS+ LL L ++ + +H +R + ++ +V D+ Sbjct: 39 VVAGISGGPDSVALLWMLVNLWRGK------VIVAHFEHGIRGRESIEDAVFVRDLAFNF 92 Query: 81 RIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + S + + G+ AAR RY + + A I H DD +ETV Sbjct: 93 QCPFFMESVPVPQLRQKGEGIEEAARRLRYEFLEKIRSENKAAYIAVGHHNDDLVETVIF 152 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R +G+ + + +I RP + R +I L +I+W ED +N D Sbjct: 153 NVIRGTGLRGL-------QGIPEKRGYIVRPLIDFTRREITDLLEGLSINWREDSTNVDV 205 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R ++R + + K++K + A L+ + ++ I Sbjct: 206 NYARNKIRLQLIPLLEREYNPKIRKHIAFLSRQAFETANLLENEAAK-INGLVGIKPLPY 264 Query: 258 NI---DSTLLFYL----LRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGR 306 D L L L+++ + Q L E ++ +K Sbjct: 265 TKALWDRKALRSLNLPALQITECLRRQQRDLHLTTLSSDRTELLLKLIKDKINWRFQWEG 324 Query: 307 VV 308 V Sbjct: 325 KV 326 >gi|268318837|ref|YP_003292493.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785] gi|262397212|emb|CAX66226.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785] Length = 431 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 10/227 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A SGG DS+ LL L + L + S + +DHCLR+ + E + + + Sbjct: 15 IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S L++ W PQ G+ A ARE RYA ++E + ++TAH DD +E + Sbjct: 72 TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYQTDYLLTAHHGDDLIENI 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R M + + ++ + RP ++ ++++ + ++ + ED +N Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNF 188 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +D R R+R V + D L F + ++ + Sbjct: 189 EDDTLRNRLRHHVVPLLKKDTTHLVKNANHFSESVALLSKCQSDFFD 235 >gi|168576121|ref|ZP_02722026.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae MLV-016] gi|183578020|gb|EDT98548.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae MLV-016] Length = 425 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|294507733|ref|YP_003571791.1| cell cycle protein MesJ [Salinibacter ruber M8] gi|294344061|emb|CBH24839.1| cell cycle protein MesJ [Salinibacter ruber M8] Length = 468 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 130/380 (34%), Gaps = 26/380 (6%) Query: 6 IESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++V F +L+ +LVA SGG DSM L L + +D A+ V++ LR Sbjct: 6 VDTVAAFSDRHALLDEGPVLVAASGGVDSMTCLSVLRRLDAD-------VHALHVNYGLR 58 Query: 64 ETAKDEVRYVSDVCSRLR--IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 A + V C + SVV+ L AAAR RY ++ A I Sbjct: 59 AGADGDEALVRRWCQEQSPAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEI 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A ++ T H DDQ ET+ + R +G+ + D ++ + RP L RR+ I Sbjct: 119 GAPVVATGHHRDDQAETLLLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAI 178 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++ + W DP+N ++R +R + + V Sbjct: 179 EAYAESMGLPWRTDPTNQRHDYDRGVIRTEILPRLEAHFEGATDALARSADLMQEYVDQA 238 Query: 238 IPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + L + A+S + L + L + A + E + Sbjct: 239 LRPALKRRMGRAYTDHEAGGALSVEALREAPPVWRRRLLLEALRRALPTAPYSRAVAEEL 298 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL----PTLILYPEETTVWDGRYQFQN 346 +++ + +G + R L PT I + + GR + + Sbjct: 299 EALVEAQVGRRMEVGAGTVWRERGRLRFVPDAATPDPLSPTPIDWGTPVAIPQGRLRVEL 358 Query: 347 LSDSLIQIGPQSYRKADVPS 366 + A + Sbjct: 359 CDGRPASLASGPPHLAYADA 378 >gi|227522408|ref|ZP_03952457.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290] gi|227090466|gb|EEI25778.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290] Length = 478 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 96/218 (44%), Gaps = 8/218 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++VAVS G DSM LL L L RS + VDHCLRE +K E ++ CS Sbjct: 30 DQPVVVAVSTGIDSMTLLYLL-EHLDQRS---PQIIVAYVDHCLREQSKRETVFIQQYCS 85 Query: 79 RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + W + PQ G+ AAARE RY K AT+++TAH DD ET+ M Sbjct: 86 DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLM 145 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R + L G+ + + RP L +++I F +I W ED +N D Sbjct: 146 KLVRGGQVE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNLDL 202 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +R R R + ++ F D ++ + Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLRHFVDYSKQLKTLIE 240 >gi|76788050|ref|YP_328740.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909] gi|77405606|ref|ZP_00782695.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B] gi|76563107|gb|ABA45691.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909] gi|77175750|gb|EAO78530.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B] Length = 424 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 17 AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++ AR RY S+ + T ++TAH DDQ ETV+M Sbjct: 74 QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+ + N + RPFL ++E + NI ED SN Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + AL + + +D + ++ L + + D L Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236 Query: 258 NIDSTLLFYLL 268 ++ +LL Sbjct: 237 RQTHSVQEFLL 247 >gi|22536199|ref|NP_687050.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R] gi|25010088|ref|NP_734483.1| hypothetical protein gbs0013 [Streptococcus agalactiae NEM316] gi|76797982|ref|ZP_00780241.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21] gi|77414471|ref|ZP_00790621.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515] gi|61217360|sp|Q8E2H4|TILS_STRA5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61217362|sp|Q8E7Y2|TILS_STRA3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22533016|gb|AAM98922.1|AE014191_14 MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R] gi|23094439|emb|CAD45658.1| Unknown [Streptococcus agalactiae NEM316] gi|76586662|gb|EAO63161.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21] gi|77159481|gb|EAO70642.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515] Length = 424 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 17 AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++ AR RY S+ + T ++TAH DDQ ETV+M Sbjct: 74 QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+ + N + RPFL ++E + NI ED SN Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + AL + + +D + ++ L + + D L Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236 Query: 258 NIDSTLLFYLL 268 ++ +LL Sbjct: 237 RQTHSVQEFLL 247 >gi|77411309|ref|ZP_00787658.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111] gi|77162645|gb|EAO73607.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111] Length = 424 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 17 AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++ AR RY S+ + T ++TAH DDQ ETV+M Sbjct: 74 QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+ + N + RPFL ++E + NI ED SN Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R + AL + + +D + ++ L + + D L Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236 Query: 258 NIDSTLLFYLL 268 ++ +LL Sbjct: 237 RQTHSVQEFLL 247 >gi|329666677|gb|AEB92625.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026] Length = 431 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A SGG DS+ LL L + L + S + +DHCLR+ + E + + + Sbjct: 15 IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S L++ W PQ G+ A ARE RYA +++ + ++TAH DD +E + Sbjct: 72 TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGREYQTDYLLTAHHGDDLIENI 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R M + + ++ + RP ++ ++++ + ++ + ED +N Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNF 188 Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +D R R+R V + + L F + ++ + Sbjct: 189 EDDTLRNRLRHHVVPLLKKETSHLVKNANHFSESVALLSKCQSDFFD 235 >gi|221230959|ref|YP_002510111.1| ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC 700669] gi|254789050|sp|B8ZJI9|TILS_STRPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|220673419|emb|CAR67877.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC 700669] Length = 425 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNTNVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|317060743|ref|ZP_07925228.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. D12] gi|313686419|gb|EFS23254.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. D12] Length = 446 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 117/323 (36%), Gaps = 28/323 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RY 72 + + ILVA SGG DS+ L+ L + SF + + + H +R+ A +E + Sbjct: 16 QYIQEGDRILVAFSGGPDSVFLVEMLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLF 72 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 D + + V K L A R RY + K I TAH Sbjct: 73 CLDYAKKKNLEIIARKMDVPSYAKKEGQSLEEAGRILRYQFFYQIQKQRAYHKIATAHHL 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LET + R R + +G L+G+ RP + +I S+L + I++ Sbjct: 133 DDHLETFFFRLLRGSSMEG--LAGISRKQADK-----IRPLRDFEKAEILSYLERHQIAY 185 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 C+D +N + + R R+R + L L K+++ + + + ++ Sbjct: 186 CKDKTNEETEYSRNRIRLEL----LPQLKSYNPKWKEKVASFMEELEERKEEEEGIDWKA 241 Query: 249 IIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 IS L + + + + + ++ L+ G + Sbjct: 242 YWKEGFISVTKLQKEKPYFRKKILYKYLLSKQI--PINRKQIHQIFTLLEKGGSLSYDLK 299 Query: 306 RVV-IDRRANFLWIT---RAVRN 324 + + +W+ + RN Sbjct: 300 NFWKFKKEYDRIWVESLQKEERN 322 >gi|307565061|ref|ZP_07627574.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A] gi|307346230|gb|EFN91554.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A] Length = 456 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 29/257 (11%) Query: 6 IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + V+ F+ + L LVA+SGG+DS+ LL+ LH + K +A+ + L Sbjct: 2 LNKVKKFIAKYQLLNKEKCYLVALSGGADSVSLLLILHQL-------GYKINAVHCNFKL 54 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117 R E + + ++ D+C+R I + + ++ + + AARE RY + K+I Sbjct: 55 RGEESYRDEQFCIDLCNRHDIPLKRIHFDTTEYASLRKISIEMAARELRYTYFEQLRKSI 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA + H +D +ET+ + R G+ T + N + RP L C R+DI Sbjct: 115 NAEGVCVGHHQEDSVETILLNLTRGTGIHGL-------TGIAPRNGNVIRPLLSCTRKDI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230 +F++ + D SN R ++R + + ++ + + Sbjct: 168 ETFIIGEGEHYVTDSSNLVSNVVRNKLRLLVIPLLKEINPSVQASIAQTAQYLSEAGTVA 227 Query: 231 NNAVAMLIPKYLTVHMR 247 ++A+ K+ H + Sbjct: 228 DDALLRYFDKFGISHSK 244 >gi|258510216|ref|YP_003183650.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476942|gb|ACV57261.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 475 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/303 (23%), Positives = 117/303 (38%), Gaps = 17/303 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + FF + + AH ++ VSGG DSM LL + FS + V H LRETA Sbjct: 12 ISFFQQHRLETAHAVLGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + +V C I + K + + AA + +I+ AH Sbjct: 72 DAAFVERYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALADRARVKGGVILVAHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+LET MR R G+G + + + RP L + +I + + Sbjct: 132 QDELETFIMRLLRGAGPGGLGAMRPEAEM---NGVRVLRPLLAVEKSEIERYAALHGVPH 188 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMR 247 ED +N D RF R RVR+ V + AL + ++ KV A+ +L + + + Sbjct: 189 VEDETNEDPRFFRNRVRQVV----IPALRAVEPRAEE---KVRQALELLWAEDAYMRELA 241 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 A + D + F R+ G++ + R + ++L S + ++ Sbjct: 242 CEAARRVAVCGADGRIAFSASRL------GELHVSLQRRVIHILLNCFSAREWTLAHVEA 295 Query: 308 VID 310 V Sbjct: 296 VRR 298 >gi|167518720|ref|XP_001743700.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777662|gb|EDQ91278.1| predicted protein [Monosiga brevicollis MX1] Length = 475 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 99/465 (21%), Positives = 166/465 (35%), Gaps = 64/465 (13%) Query: 16 LVYPAHILVAVSGGSD---------------------------SMGLLIALHSVLSDRSF 48 L ++LVAVSGG D SM L+ ALH R Sbjct: 18 LQDARNLLVAVSGGPDRCEWDDATSMATCAMCWLIGHAPACICSMALVHALHQQQPGRVR 77 Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGLMAAAREAR 106 + VDH LR + DE V R I S + W + P++ A AR R Sbjct: 78 AHL------VDHRLRPESTDEAHQVMSELQRHSIVCGMSTLQW-AAAPRSNTQALARTER 130 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLW- 164 Y + A I+TAH DDQ+ET+ MR G +G+ L Sbjct: 131 YNALVAAAHQHGCQAILTAHHADDQVETILMRICNLSGLVGALGIRARAHWRSERHGLQA 190 Query: 165 -ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR------DIDLHALY 217 ++RP L + D+ + ++ D SN D++ER R+R + L +Y Sbjct: 191 PLARPLLHLTKADLVQYCQTNDVRTVNDCSNDSDKYERNRLRFALAARQQQTPDTLGEMY 250 Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG- 276 + + LR+++ L L + I + L + ++ ++A + Sbjct: 251 ALAENWTVLRLELEGEARELAQSALHHDVHPQIWSIESKLVARAPRAVQIVLITACLVAV 310 Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN----FLWITRAVRNLPTLILYP 332 P R +E ++ L+ + +G V +R+ + LW + + L + Sbjct: 311 SGGRQPDPRQVEALVSTLEQSQPVRGQVGVVSFERQGSNHALHLWRSPLRADFEPLTIQS 370 Query: 333 EETT--VWDGRY------QFQNLSDSLIQIGPQS--YRKADVPSGIPPIIAQRALSSMPS 382 WDGR+ Q +S ++ P + +++ G + + P Sbjct: 371 PTPAAWYWDGRFRCHPALQATARPESAFRLVPLTARWQQHLSQQGAWHHLKSAIRACPPQ 430 Query: 383 KEGGKPLL----APFSRFMTKFDLPVAYAFSISFGKVFIPRLPFF 423 G +PLL +P LP + + P LP+ Sbjct: 431 LRGSQPLLLMQTSPLDSEWKPAGLPTLHPHELLAADYDPPPLPWL 475 >gi|126656632|ref|ZP_01727846.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110] gi|126621852|gb|EAZ92560.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110] Length = 323 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 22/327 (6%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ S V ++ L + ++IL+AVSGG DS+ LL + + S + K + Sbjct: 5 MWTSLHAKVHQTLKDSLILPHQSNILIAVSGGQDSLCLLKLIVDLQSKWGW---KIAIGH 61 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 DH + +V ++ I + + K AAARE RY + E A Sbjct: 62 CDHGW-ASDIGIADHVRELAYHWNIPFYLKVAEAMKET---EAAAREWRYQSLVEIANKN 117 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 T ++T HT D+ ET+ R KG+G + + + RP L+ R + Sbjct: 118 EFTEVVTGHTLSDRAETLLYNLIRGSGSKGLGS--LTWKRPLSNKISLVRPLLKVSRPET 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNA 233 +F Q ++ ED N + + R R+R+ ++D + + + ++ ++ Sbjct: 176 LAFCQQFDLPIWEDAVNANLDYARNRIRQQLLPYLKDHFNPNVESTLSQTSEVLKTESDY 235 Query: 234 VA-MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + S +++DIL I L ++R I P + +E + Sbjct: 236 LESEANKILIASFNNSKQQLNRDILKPIPLALQRRVIRQFLEKI--IIRKPNFEQIEETV 293 Query: 292 LFLKSGKRGCVSI--GRVVIDRRANFL 316 + + +R S G ++++ N++ Sbjct: 294 NLINAPRRSRTSSFPGNIILEVEENYI 320 >gi|148997947|ref|ZP_01825460.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70] gi|168491781|ref|ZP_02715924.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC0288-04] gi|169834329|ref|YP_001693445.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Hungary19A-6] gi|307066647|ref|YP_003875613.1| putative ATPase [Streptococcus pneumoniae AP200] gi|226695548|sp|B1I6Y3|TILS_STRPI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147755957|gb|EDK63000.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70] gi|168996831|gb|ACA37443.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Hungary19A-6] gi|183574048|gb|EDT94576.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC0288-04] gi|306408184|gb|ADM83611.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Streptococcus pneumoniae AP200] Length = 425 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|322388490|ref|ZP_08062093.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779] gi|321140803|gb|EFX36305.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779] Length = 425 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 103/269 (38%), Gaps = 29/269 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 + +++A+SGG DSM L L + + I+ V+H R + E + + Sbjct: 19 HSRVVLALSGGLDSMFLFQLLLTYQKEL---DIELFLAHVNHKQRPESDKEENELRKLAE 75 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + V + + AR+ RY E + ++T ++TAH DDQ+ET++MR Sbjct: 76 QAGVPIYVACFTGDFSEVN----ARQFRYEFFREVMEKTSSTALVTAHHADDQVETIFMR 131 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LS + + ++ + RP L ++D I ED +N ++ Sbjct: 132 LIRG--VRLQHLSAIKERQIFAKG-ELIRPLLSFYKKDFPE------IEHFEDSTNKENH 182 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 + R R+R + L L + + + ++ V+ + + L+ Sbjct: 183 YLRNRIRN----LYLPQLEKENVQVKKAILEFGKEVSDYQIALAELSQAVDVEDLTQFLS 238 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSM 287 LL Q L + + Sbjct: 239 FSEATQGVLL---------QQYLSRFADL 258 >gi|167581389|ref|ZP_02374263.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis TXDOH] Length = 478 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 21/322 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + + A I +A SGG DS LL + R G + A+ V H L Sbjct: 2 LDAIGVALTAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++ L + + G+ A+AR+ RY + A + Sbjct: 57 ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 116 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 117 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 + W +D SN D R+ R +R V L AL F+D + A L+ Sbjct: 176 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 231 Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 + + ++ +L+ +D LLR G S M + + Sbjct: 232 AAIDLHAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 291 Query: 295 KSGKRGCVSIGRVVIDRRANFL 316 + V + + + Sbjct: 292 RDAHALRVDHAGWRLRLYRDDI 313 >gi|326799033|ref|YP_004316852.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21] gi|326549797|gb|ADZ78182.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21] Length = 443 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 70/367 (19%), Positives = 137/367 (37%), Gaps = 35/367 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81 L+AVSGG DS+ ++ K+ F + LR A + V ++ + + Sbjct: 24 LLAVSGGRDSVLMVHLFAK-------AKLPFGIAHCNFQLRGQHADADEELVRNLAAEME 76 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V + K + AAR RY + + I AH +D +ETV + Sbjct: 77 VPLFVKRFDTIAYAKKQGISIEMAARALRYEWFEQIRSDQHYRYIALAHHQNDSVETVLL 136 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ + + RP L RE++ +L+RN+ + ED SN Sbjct: 137 NLTRGTGIAGLH-------GILPKRGVLIRPLLFLTREEVTQTVLERNLVYREDESNFST 189 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R ++R V + FQ+ + +L + + + + + Sbjct: 190 DYLRNKIRLEVVPRLKAINPSLERTFQENSRRFEEMETLLKNYSEQLRKKLFVETTSNTY 249 Query: 258 NIDSTLLFYL--LRVSAAICGGQISLPGYRSMERVMLFL--------KSGKRGCVSIGRV 307 I+ L L LR ++ P Y+ + V+ L ++GK+ ++ Sbjct: 250 QIELKALQELKPLRTLLY----ELFRP-YQFLPEVLDDLVSIWQNDNRTGKQFFSDSYKL 304 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367 ++DR N + + +LP L P + + G + L + +++ D Sbjct: 305 LVDRE-NLILQKKEPVDLPHQFLQPNQAVICQGFHLTVKLVEKPVKMNEFGKVAVDADKL 363 Query: 368 IPPIIAQ 374 + P++ + Sbjct: 364 LFPLLVR 370 >gi|332198668|gb|EGJ12751.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41317] Length = 425 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 127/317 (40%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFKKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F++ + ++N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRNAILGISNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|148993574|ref|ZP_01823045.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68] gi|149003152|ref|ZP_01828061.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69] gi|149007705|ref|ZP_01831314.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74] gi|168487652|ref|ZP_02712160.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1087-00] gi|168489346|ref|ZP_02713545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae SP195] gi|225860057|ref|YP_002741566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Taiwan19F-14] gi|237651091|ref|ZP_04525343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CCRI 1974] gi|237821203|ref|ZP_04597048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CCRI 1974M2] gi|298229478|ref|ZP_06963159.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255106|ref|ZP_06978692.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501801|ref|YP_003723741.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae TCH8431/19A] gi|307126185|ref|YP_003878216.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B] gi|254789053|sp|C1CNP4|TILS_STRZT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147758893|gb|EDK65889.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69] gi|147760700|gb|EDK67672.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74] gi|147927795|gb|EDK78817.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68] gi|183569575|gb|EDT90103.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1087-00] gi|183572160|gb|EDT92688.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae SP195] gi|225727017|gb|ACO22868.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae Taiwan19F-14] gi|298237396|gb|ADI68527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptococcus pneumoniae TCH8431/19A] gi|306483247|gb|ADM90116.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B] gi|327388996|gb|EGE87344.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA04375] gi|332071714|gb|EGI82207.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17570] Length = 425 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|332290992|ref|YP_004429601.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5] gi|332169078|gb|AEE18333.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 435 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 23/312 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 + + ILV VSGG DSM +L + S + LR + + +V+ Sbjct: 15 FLLDSKILVTVSGGLDSM-------LLLLLCRQAGLTMSVAHCNFNLRGVESDGDQVFVA 67 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C+ I + + S +T AARE RY E + + I+TAH +D Sbjct: 68 SYCTLHNIPIYIKGFDTSAYAKTSKTSTQIAARELRYQWFKELSVAEDFDYILTAHHLND 127 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET + R KG+ T + +N I RP L+ R+ IR++ L+ + W E Sbjct: 128 DLETFLINLGRGTGIKGL-------TGIPVVNGEIVRPLLKFSRKQIRNYALKEGLQWRE 180 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D + R +R A +K Q + + + L+ Y + + Sbjct: 181 DSSNGTDNYVRNHIRHHAIPNLEEAQPNILKGLQHTQEHLKQS-ERLLKVYTDQLRQQFM 239 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVV 308 +S +D L A + +S G+ + + + +SGK S R++ Sbjct: 240 TVSNGDEVMDLVELASHPEPEAVLY-QLLSPYGFTAWDDIYKLPQAQSGKEITSSTHRLL 298 Query: 309 IDRRANFLWITR 320 +R + + + Sbjct: 299 KNREKLIISVIK 310 >gi|77164367|ref|YP_342892.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707] gi|254434774|ref|ZP_05048282.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27] gi|76882681|gb|ABA57362.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707] gi|207091107|gb|EDZ68378.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27] Length = 442 Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 73/351 (20%), Positives = 126/351 (35%), Gaps = 22/351 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL +L + SAI +DH L +++ + + C+ L + Sbjct: 23 VAYSGGLDSQVLLYSLVQLSPK--LPGSLISAIHIDHGLHPRSEEWSLHCRESCAALGVG 80 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + V + AAAREARY + ++TA DDQ+ET+ ++ R Sbjct: 81 YEEVKVNAHPRKGESPEAAAREARYGALRRRIAL--GECLLTAQHQDDQVETLLLQLLRG 138 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + RP L R +++ + Q + W EDPSN D F+R Sbjct: 139 GGPA---GLAAMAKAAPFGQGRLLRPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDRN 195 Query: 203 RVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 +R + + L + + + + + L +S L Sbjct: 196 YLRHKILPLLWQRWPGLGRTLSRAAFHQADAAWLLDQQAQRELVAVSAGKQGLSVQALQA 255 Query: 260 DSTLLFY-LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANF 315 + LR Q+ LP ++R++ L + V+ + R + Sbjct: 256 LAPPQRRNSLRYWFKQM--QLPLPDSIHLQRILEEVLPAPEDAQPLVAWPGAELRRYRDR 313 Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 L+ A + LP E VW+G + + P+ R + + Sbjct: 314 LY---AQKPLPPHDAA--EILVWEGVEPLVLPAGVGGVLVPKRTRGLGLDA 359 >gi|22299159|ref|NP_682406.1| hypothetical protein tlr1616 [Thermosynechococcus elongatus BP-1] gi|61217355|sp|Q8DIH2|TILS_THEEB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22295341|dbj|BAC09168.1| ycf62 [Thermosynechococcus elongatus BP-1] Length = 344 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 56/263 (21%), Positives = 99/263 (37%), Gaps = 19/263 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L + IL+A+SGG DS+ L L + + A+ DH R + +V Sbjct: 17 QWLPLGSRILIALSGGQDSVCLTRLLLDLQP---HWQWSLVAVHCDHRWRADSTANANFV 73 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + VVS + AAAR RY + AK ++ T ++TAHT D+ E Sbjct: 74 QQLAQKWHLPCEVVSAPDLPKT---EAAARSWRYQVFESVAKALDCTHVVTAHTQSDRAE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ + R + G+ ++ + + RP L R +F + +D + Sbjct: 131 SLLLHLLRGTSPDGLATLLPSRSL---GAIQLVRPLLGMTRAQTAAFCQAYGLPIWQDET 187 Query: 194 NTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N + + R R+R + AL + R V L P L H Sbjct: 188 NHNLEYRRNRLRLELIPYLQQHFNPNVEEALAQTAELLASDRAYFEAEVERLAPTVLREH 247 Query: 246 MRSIIAISQDILNIDSTLLFYLL 268 ++ + + L L+ Sbjct: 248 PPALDRLR--LREFPLALQRRLI 268 >gi|225855746|ref|YP_002737257.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae P1031] gi|254789052|sp|C1CN76|TILS_STRZP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225726142|gb|ACO21994.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae P1031] Length = 425 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|77407669|ref|ZP_00784424.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1] gi|77173668|gb|EAO76782.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1] gi|319746208|gb|EFV98477.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae ATCC 13813] Length = 424 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 20/251 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DS+ LL L+ + S I ++H R+ ++ E Y+ Sbjct: 17 AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + ++ AR RY S+ + T ++TAH DDQ ETV+M Sbjct: 74 QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R R + LSG+ + N + RPFL ++E + NI ED SN Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + R R+R I L + + +D + ++ L + + D L Sbjct: 181 DYLRNRIRN----IYFPTLERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236 Query: 258 NIDSTLLFYLL 268 ++ +LL Sbjct: 237 RQTHSVQEFLL 247 >gi|322390535|ref|ZP_08064053.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 903] gi|321142809|gb|EFX38269.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 903] Length = 424 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 105/298 (35%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL E F +LVA+SGG DSM L L+ ++ KI V+H Sbjct: 5 FLEFCEKQDLFT----PHRRVLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + R V + A AR RY + + + T Sbjct: 58 QRPESDLEESELRTLADRRETRIHVAHYSGDFT----EAKARTFRYDFFKQIMEKEDCTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H +DQ ET +MR R + LSG+ + + RP L ++++ Sbjct: 114 LVTGHHANDQAETTFMRLIRGTKLR--HLSGIPVRQPFGKG-ELIRPLLTFTKDELM--- 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + R RVR + L +VN L Sbjct: 168 ---KIPHFEDSSNDSQDYFRNRVRHQYLPEFEKENPQMQASLRYLAEEVNRWHQALKELT 224 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + ++ + + + ++ S LL L + G + ++ L+ + Sbjct: 225 SKLSIQDLASFRKYSHSVQSFLLEEYLAQFPDLQLG------RAQFQELLDLLRKKRN 276 >gi|331016383|gb|EGH96439.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 445 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA ++ + +++T DDQ ET+ R R Sbjct: 88 FESVRVKV-EPGASVEQAARQARYAAFTK--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 202 LRSQVLSLLTSRWPQATASLARTAGHLGEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 261 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + R+S A LP + R + + R Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321 Query: 314 NFLWITRA--VRNLPTLILYPEETT 336 +W A R + + + T Sbjct: 322 GCIWWLPAGWERTCSEAVNWADPHT 346 >gi|254428462|ref|ZP_05042169.1| PP-loop family [Alcanivorax sp. DG881] gi|196194631|gb|EDX89590.1| PP-loop family [Alcanivorax sp. DG881] Length = 433 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 122/325 (37%), Gaps = 20/325 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 +L+A+SGG DS L L ++ + SA+ +DH L+ ++ R+ + Sbjct: 15 APDGPLLLALSGGLDS-----CLLLHLLIKAGLGPRLSAVHIDHQLQADSQGWARFCQAL 69 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + I ++ GL A AR+ARY ++ A+ ATL+M AH +DQ ET+ Sbjct: 70 ADQQGIPLAIEKV-AVDMANGLEAGARDARYRVLLPLARAQGATLVM-AHHRNDQAETLL 127 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R +G+ + + RP L R+ + S+ +++W EDPSN D Sbjct: 128 FRLLRGAGVQGLSAMREHSEQ---QGVPLWRPLLGVGRQTLESWGAALSLNWREDPSNQD 184 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRSIIAI 252 R +R + + A +L + ++ + Sbjct: 185 QSLRRNYLRHTIFPALRDRWPGADGTLARAADHMAEAGELLNEIAVQDADSLGVAGASFP 244 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVID 310 D+ ++ +LR + + P +E RV+ + V G Sbjct: 245 LTDLADLSLARQRNVLRWWLQ--QNRATAPSAAVLEQLRVLHLAAGDSQARVEWGGFAAR 302 Query: 311 RRANFLWI--TRAVRNLPTLILYPE 333 L++ A + +L+ E Sbjct: 303 LYRGALYLASREAFQPWQGDVLWSE 327 >gi|61216635|sp|Q886M6|TILS_PSESM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 445 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 106/308 (34%), Gaps = 18/308 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 88 FESVRVKV-EPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 202 LRSQVLPLLTSIWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 261 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + R+S A LP + R + + R Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321 Query: 314 NFLWITRA 321 +W A Sbjct: 322 GCIWWLPA 329 >gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM 2831] gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM 2831] Length = 345 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 16/304 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ A + R +VDH LR + E V L + Sbjct: 2 LLAVSGGPDSSALMHAAARL---RDATGASLRVATVDHGLRSESGAEAEAVGRAARALGL 58 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H++++W +KP TGL AAR ARYAL++ HA+ + A L++T HT DDQ ETV +R Sbjct: 59 PHAILTWAGAKPGTGLQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAETVLIRLAAG 118 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+GM L + RPFL + + ++ R I++ DP+N D RF R Sbjct: 119 SGP--AGLAGMRAERDLGPGLALGRPFLHLPKASLVAWCAARGIAYARDPANGDPRFARG 176 Query: 203 RVRRFVRDIDLHALY-LKMKKF----QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R ++ L ++ + + +A + + + D Sbjct: 177 RLRAAWPALEREGLTRARLARLAERAARDEAALRSAAEQALDGARRSGPETGAELRLDGR 236 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRS------MERVMLFLKSGKRGCVSIGRVVIDR 311 + + LR + P +E ++ L+ G+ ++ ++ Sbjct: 237 ALAALPDAVALRCLDLALARAGAAPRRLERLETLVLESLLPALRRGEPVRRTLAGFLVSA 296 Query: 312 RANF 315 A Sbjct: 297 DAGG 300 >gi|163847595|ref|YP_001635639.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl] gi|222525450|ref|YP_002569921.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl] gi|163668884|gb|ABY35250.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl] gi|222449329|gb|ACM53595.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl] Length = 474 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 36/324 (11%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ +R F+R+ A +LVAVSGGSDS+ LL L ++ G +DH L Sbjct: 2 LDLLRQFLRAEGVEQASARLLVAVSGGSDSLALLHMLCTL---HRAGGPTPIVAHLDHGL 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + + +V+ + + V + P A AR ARY ++ A + Sbjct: 59 RGAESAADADFVAATATAWGVRAIV--GRAHLPPGTTPAEARTARYTFLATTALAEHVDA 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--------------DLNLWISR 167 ++ AH DDQ ETV M R GL GM + + + R Sbjct: 117 VLVAHQADDQAETVLMHLLRGAGP--AGLRGMRARVEWSEWAAALIESGQAPPHGPPLLR 174 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDL 226 P L R ++ ++ ++ +DP+N + + R R+R + + + + Sbjct: 175 PLLTVSRSELAAYCAAHQLTPRDDPTNRNLHYVRARIRHVLLPQLASENPQITAALTRTA 234 Query: 227 RVKVNNA---VAMLIPKY----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 R+ + ML ++ + ++ +++I L Y LR + A G + Sbjct: 235 RICAEDYDFIQTMLADQWPNLIVEQQSDKVVFERAALMSIHPALRRYALRRAIAELGAEE 294 Query: 280 SLPGYRSMERVMLFLKSGKRGCVS 303 PG ++ + L G+ G + Sbjct: 295 --PGLAHLDAAL-HLIGGQSGRST 315 >gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Brevibacterium mcbrellneri ATCC 49030] gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Brevibacterium mcbrellneri ATCC 49030] Length = 326 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 21/315 (6%) Query: 7 ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +R V + P H L+AVSGG+DSM L A + +F A++VDH L+E Sbjct: 12 AKIRKAVEDALEPGHTYLIAVSGGADSMSLAAACAFLTRK----DYEFVAVTVDHGLQEG 67 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + L + +V + + + GL A AR ARYA + AK A ++ A Sbjct: 68 SAEVAARTQRALTDLGLTATVETAEVTATSDGLEADARTARYAALDRVAKERGAAGVLLA 127 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ETV + R + + RP L R + S +N Sbjct: 128 HTQNDQAETVLLGLLRGSGARSLAGM-------RPRAGRYIRPLLGITRAETESATTAQN 180 Query: 186 ISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I DP N+D F RV+VR + ++ +Y + + L ++ + Sbjct: 181 IPVWNDPMNSDPSFTRVKVRTQLMPALAEVAGSGVYANLARTAHLLAMDSDELESQTDAQ 240 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKSGKR 299 + +++ + ++ + L ++R + +++ ++ ++G Sbjct: 241 AHIRGDTLLHTAAEL---PAALRTRVIRDWLWQFSPTNEAGFHHVTAIDDLLTGARTGAV 297 Query: 300 GCVSIGRVVIDRRAN 314 C VV R + Sbjct: 298 SCPPAAEVVRTRAGD 312 >gi|148984555|ref|ZP_01817843.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71] gi|147923332|gb|EDK74446.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71] gi|301799160|emb|CBW31672.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae OXC141] Length = 425 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|168493989|ref|ZP_02718132.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC3059-06] gi|183575851|gb|EDT96379.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC3059-06] Length = 425 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|301383970|ref|ZP_07232388.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato Max13] gi|302064144|ref|ZP_07255685.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato K40] gi|302134071|ref|ZP_07260061.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 445 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS LL L + + AI V H L+ A + VC L +A Sbjct: 30 VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V K +P + AAR+ARYA +E + +++T DDQ ET+ R R Sbjct: 88 FESVRVKV-EPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++RP L R ++ S+ ++ + W EDPSN D +F R Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + + A +L + L + Sbjct: 202 LRSQVLPLLTSRWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 261 Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L + R+S A LP + R + + R Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321 Query: 314 NFLWITRA--VRNLPTLILYPEETT 336 +W A R + + + T Sbjct: 322 GCIWWLPAGWERTCSEAVNWADPHT 346 >gi|146308057|ref|YP_001188522.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp] gi|145576258|gb|ABP85790.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp] Length = 440 Score = 186 bits (473), Expect = 6e-45, Method: Composition-based stats. Identities = 82/401 (20%), Positives = 134/401 (33%), Gaps = 46/401 (11%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L SAI V H L+ A + + VC+RL I Sbjct: 23 IAFSGGLDSSVLLHLLADWAQHEELPP--LSAIHVHHGLQPAADAWPEHCALVCARLDIP 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 +V + + P L AAR A + + +++ A DDQ ET+ R R Sbjct: 81 LDIVRAQVA-PGASLEQAARRA--RYAAFAERLGPGEILLGAQHRDDQAETLLFRLLRGA 137 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + ++ + RP L C R ++ ++ ++W EDPSN D+RF R Sbjct: 138 GVRGLAAMPVSRSL---GCGTLLRPLLGCSRAELHAYAQCHGLAWVEDPSNADERFSRNF 194 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL---- 257 +RR V + + A +L + + + R + A+ L Sbjct: 195 LRRQVMPLLAERWPQLAASLSRSAGHLGEAQQLLEELAEMDLLAARGVCALPWLPLPSLD 254 Query: 258 -----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + LLR A + + + + + R Sbjct: 255 LSAVAALSDARQRNLLRHWLAPMSRMPDSDHWAGWYDLRD-AAADATPIWKLADGELHRA 313 Query: 313 ANFLWITR------------AVRNLPTLILYPEETTV----------WDGRYQFQNLSDS 350 LW L + P V W RY+ S Sbjct: 314 EGRLWWLSGDWLRPPQPFDLPCGALGEPVELPGNGRVNLSGELPQGHWHLRYRVGGESLQ 373 Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + G + ++ +PP + R +P G L+A Sbjct: 374 VPGRGRRDLKRLLNEMRVPPFVRSR----LPLLFDGDELVA 410 >gi|168484297|ref|ZP_02709249.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1873-00] gi|172042410|gb|EDT50456.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae CDC1873-00] Length = 425 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAETELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|148988915|ref|ZP_01820330.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73] gi|147925726|gb|EDK76802.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73] Length = 425 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|254522025|ref|ZP_05134080.1| tRNA [Stenotrophomonas sp. SKA14] gi|219719616|gb|EED38141.1| tRNA [Stenotrophomonas sp. SKA14] Length = 428 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 69/344 (20%), Positives = 117/344 (34%), Gaps = 18/344 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A +LV SGG DS LL L A+ V H L+ A D VR+ Sbjct: 9 PLDAPLLVGYSGGVDSTVLLHWLWRCAQASGTP---LRAVHVHHGLQSAADDWVRHCQQQ 65 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C+ I +V + + TGL + + A+ + ++ A DDQ ET Sbjct: 66 CTTWDIELAVHHVQVA-VGTGLGIEGAARQARRAAFAAELRDGETLVLAQHQDDQAETFL 124 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R+ R G+ + + RP L+ R+ + + Q + W EDPSN D Sbjct: 125 LRALRGSGVDGLAAMSAHSRLGRHS---LWRPLLQVPRDVLLDYARQHTLYWVEDPSNAD 181 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--- 253 D +R +R V + +L + + +A Sbjct: 182 DHADRNFLRLQVLPLLRQRWPHAAAALAGSAAHCAQTRELLDEEDAELIAHLEVAPRVLS 241 Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPG--YRSMERVMLFLKSGKRGCVSIGRVVID 310 Q + I +LR + G LP + +L + ++ V I Sbjct: 242 LQLLRQISPGRAARVLRAWV-LGHGAAPLPATVLQQALAELLPADNDRQARVGWHDHAIQ 300 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 + + ++ A +L + WDGR +++ Sbjct: 301 QWRDHAYLLPARL----PVLPRDWQAEWDGRMPLALPDGGQLRL 340 >gi|110639392|ref|YP_679602.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406] gi|110282073|gb|ABG60259.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 450 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 23/262 (8%) Query: 6 IESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + +R F+ + L IL+ VSGG DS+ L F + L Sbjct: 2 LHELRQFISEKQLFSSNEKILLTVSGGIDSIVLFDLFVK-------AGFSFGVAHCNFSL 54 Query: 63 RE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R + + ++VSD+ + I+ V + S + AARE RY E A+ Sbjct: 55 RGSESDGDEQFVSDLAIKQGISIHVKRFDTSAFASNNALSIQMAARELRYTWFKELARQY 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I TAH +D +ET + R GL G+ + N I RP L R+ I Sbjct: 115 GYAAIATAHQLNDIIETTLINLSRGTGI--AGLHGIPEK-----NGEIIRPLLFAGRDKI 167 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 RS+ + N+ W ED SN ++++ R +R + + L L +++ + L Sbjct: 168 RSYAEENNLKWREDSSNMEEKYARNLIRHKIVPV-LKNLNPNLEEVFKQNTERFKGTEQL 226 Query: 238 IPKYLTVHMRSIIAISQDILNI 259 ++ + + ++ + D +I Sbjct: 227 FKHHIQQYRQQLLQSTPDGYSI 248 >gi|194333384|ref|YP_002015244.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271] gi|194311202|gb|ACF45597.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271] Length = 336 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 122/323 (37%), Gaps = 48/323 (14%) Query: 3 LSPIESVRFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 L+PIE + FV L + +L AVSGG DSM L+ L S R Sbjct: 5 LTPIE--KAFVEQLTTRKLVEKGSSVLAAVSGGPDSMALMHLL---QSARPVLHFSLEIA 59 Query: 57 SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALIS 111 LR+ + + V++ +RL + + + + + + AR RY S Sbjct: 60 HCHFGLRDRESDLDESLVAEEAARLGLRCHIRHFDTRRDAGSWKKSIEETARIERYGFFS 119 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 E +T + T H +D ET+ R + G+ + + + RP L Sbjct: 120 ELQRTCGFDRVATGHHVNDNAETILFNLFRGTSVPGL-------KGIRAHHGTLIRPMLL 172 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLR 227 RRED+ S++ +NI++ D SN +R +R V + H L +++ + Sbjct: 173 MRREDVMSYIDAKNIAYRTDASNFGIEPDRNFIRHRVIPVIEERFQHKLLPSLRRISE-- 230 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 A + ++L +H + + + D L L + Sbjct: 231 ------QAGELEEFLELHFEKLQQENDGLRLCDDCLRVSDLARLT-------------TF 271 Query: 288 ERVMLFLKSGKRGCVSIGRVVID 310 ER LF ++ + C+ VID Sbjct: 272 ERKELFKRALQELCIEPSSKVID 294 >gi|218439938|ref|YP_002378267.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424] gi|218172666|gb|ACK71399.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424] Length = 323 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 19/313 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ILVAVSGG DS+ L + + + + DH T +V Sbjct: 20 LPKKERILVAVSGGQDSL---CLLKLLGDLQPKWEWDLTIAHCDHQW-PTDAGIKDHVQQ 75 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++ +I + + N K AAAR+ RY + E AK + I+T HT D+ ET Sbjct: 76 IANQWKIPFYLKTADNLKET---EAAARKWRYQALIEIAKEQGFSFIVTGHTKSDRAETF 132 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS + N+ + RP L R + F Q + ED N Sbjct: 133 LYNLIRGAGTDG--LSALTWERFLTENIKLVRPLLEISRAETYQFCQQFQLPIWEDVLNE 190 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + ++ R R+R + +++K + V L +SI Sbjct: 191 NFKYTRNRIRSQLIPYLQTHFNPQIEKTLTQTAEVLRAEVEYLEATAQEWLQKSITEDKL 250 Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRV 307 I ++ L ++R + + P + +E ++ + + R +S G Sbjct: 251 GINRTIVKSLPLALQRRVMRQFLILILSKT--PNFEQIEALVNLIHAPNRSSISSLPGGK 308 Query: 308 VIDRRANFLWITR 320 +I+ + +L + + Sbjct: 309 IIEVQGEWLNLKK 321 >gi|332077819|gb|EGI88278.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41301] Length = 412 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|83720432|ref|YP_442474.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] gi|83654257|gb|ABC38320.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] Length = 494 Score = 186 bits (472), Expect = 7e-45, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 113/322 (35%), Gaps = 21/322 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + + A I +A SGG DS LL + R G + A+ V H L Sbjct: 14 LDAIGVALSAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++ L + + G+ A+AR+ RY + A + Sbjct: 69 ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 + W +D SN D R+ R +R V L AL F+D + A L+ Sbjct: 188 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 + +R++ +L+ +D LLR G S M + + Sbjct: 244 AAIDLRAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFL 316 + V + + + Sbjct: 304 RDAYALRVDHAGWRLRLYRDDI 325 >gi|256544712|ref|ZP_05472084.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Anaerococcus vaginalis ATCC 51170] gi|256399601|gb|EEU13206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Anaerococcus vaginalis ATCC 51170] Length = 462 Score = 186 bits (472), Expect = 8e-45, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 113/316 (35%), Gaps = 35/316 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F S IE ++ I+V SGG DS L+ L+ V + + KI ++H Sbjct: 11 FKSTIEKNNLIEKN----DTIIVGASGGPDSQFLIYLLNEV---KDYYKINIVLAHLNHL 63 Query: 62 LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R A ++ + V +L I H + K + A R RY Sbjct: 64 HRLDANEDEKLVEKTGEKLEFKTFIDHKSMDDYAKKEKISAENAGRILRYDFFRSIKNKY 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I AH DDQ ETV MR R G+ + N I RP + + +I Sbjct: 124 KNAKIAVAHNKDDQAETVLMRIIRGSGLDGL-------RAMDYKNKDIIRPIMDFTKSEI 176 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV--- 234 FL + IS+ D +N + + R ++R + + + F++ V +++ Sbjct: 177 LEFLDENKISYHIDYTNLETDYTRNKIRLEI----IPEIEKINPNFKNSLVSLSDIAKSD 232 Query: 235 ---------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 L + I + I L L+R + G I+ Sbjct: 233 YKIIRKVEDEKLEKILIKKDTNHISFDKNEFEEISDALKARLIRRAVEFLYGNINDFSKT 292 Query: 286 SMERVMLFLKSGKRGC 301 ++E + ++S + G Sbjct: 293 NIEDFIK-IRSLENGK 307 >gi|149020169|ref|ZP_01835143.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72] gi|147930847|gb|EDK81828.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72] Length = 425 Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 24/267 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLL 268 + + Q + + + LL Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLL 248 >gi|319945971|ref|ZP_08020220.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641] gi|319747779|gb|EFW00024.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641] Length = 424 Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 23/286 (8%) Query: 9 VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++F + ++ +H +L+A+SGG DSM LL L+ I V+H R A Sbjct: 6 LQFCQKEGLFESHQKVLLALSGGVDSMTLLDWLYHYQHQLG---IDLVLAHVNHHQRVEA 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 E R + ++ + V + + AR+ RY + K + I+TAH Sbjct: 63 DQEERGIRELAEAKHLPLKVAHFSGPFS----ESRARQFRYDFFEKVMKEEACSAIVTAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DDQ ET+ MR R + L G+ + + + RP L +++D I Sbjct: 119 HMDDQAETILMRVIRGSRPR--HLKGIPLKQPFGQGM-LIRPLLHFKKKDFPE------I 169 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED SN + R R+R + + +L +++ L ++ Sbjct: 170 FHYEDKSNRSLDYFRNRIRHRYLPLLEEENPQVISALVNLGEDLSHWHQALKELTKDLNP 229 Query: 247 RSIIAISQDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVM 291 + + + + YLL A Q+S + + R++ Sbjct: 230 QDVTQFQKQ----SPAVQIYLLEEYLAGFPDLQLSRAQFEQLHRIV 271 >gi|291565670|dbj|BAI87942.1| tRNA(Ile)-lysidine synthase [Arthrospira platensis NIES-39] Length = 345 Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 126/330 (38%), Gaps = 26/330 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V +RS L +LVAVSGG DSM L+ L + ++ + + DH R Sbjct: 13 AKVHRSLRSRNLLPCGEALLVAVSGGQDSMCLIRLLLDLQGKWNW---RMAIAHCDHQWR 69 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + Y+ ++ ++ ++ AAARE RY ++ E A+T N ++ Sbjct: 70 RDSVANADYIEELGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180 T HT D+ ET+ R G+ I + RP L R++ F Sbjct: 127 TGHTKSDRAETLLYNLIRGSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEF 186 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIP 239 QR++ ED +NTD + R R+R + + K+++ + V L Sbjct: 187 CQQRDLQIWEDSTNTDVSYARNRIRHQLIPELANKFNPKVEQALAQTAELLRADVEYLEQ 246 Query: 240 KYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + ++ ++ + + + L ++R + + + +E++ Sbjct: 247 EADELYSLAMAPAPCNNSYGVNRHKLKSAPLALQRRVMRRFLEEVLRKGT--NFEQVEKL 304 Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWI 318 +++ + + G + ++W+ Sbjct: 305 TRLIYAPNRSQSDPFPGGAIAQVEGEWIWL 334 >gi|261417161|ref|YP_003250844.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373617|gb|ACX76362.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302328185|gb|ADL27386.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 393 Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 65/269 (24%), Positives = 110/269 (40%), Gaps = 35/269 (13%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M L+ +E++R +L+AVSGG DS+ L + + + + G V H Sbjct: 1 MSLNLVENIRH-----HGFKRLLLAVSGGLDSICLAH--YFIENSAALGIEWLGIAHVHH 53 Query: 61 CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHA-- 114 LRE A + ++V + + + + L AR+ARY + E A Sbjct: 54 GLREGTADRDAKFVEEFAKSHDVPFFLKKLDGEALKNAEGSLEENARDARYKALVEIALN 113 Query: 115 -------------KTINAT-LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160 + T I+TAH DQ ET+YMR +R G+ I D Sbjct: 114 KKWRSRNGVRDDIEEGGVTIAIVTAHHAGDQAETMYMRLKRGTTLAGLRGIQEVRIIQDD 173 Query: 161 LNL--------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +L ++ RPFL R+++ ++ + +SWCED SN D +F R ++R Sbjct: 174 TSLVSRLSSLVFLYRPFLNVTRKELLTYARENGLSWCEDESNADVKFARNKIRHEFLPNL 233 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 +++ + + A A ++ K Sbjct: 234 ERECPGAIQQLCKIAGLADRAYAKVMAKC 262 >gi|194366664|ref|YP_002029274.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3] gi|194349468|gb|ACF52591.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3] Length = 476 Score = 185 bits (471), Expect = 8e-45, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 140/407 (34%), Gaps = 35/407 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +V F + A +LV SGG DS LL L A+ + H L+ Sbjct: 46 LAAVTAFPALVPLDAPVLVGYSGGVDSTVLLHWLWRCAQASGTP---LRAVHIHHGLQAA 102 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 A + V + C L I +V + TGL + + A+ + A Sbjct: 103 ADEWVLHCQQQCIALGIELAVHRVQVES-DTGLGPEGAARQARRAAFAAELREGETLALA 161 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ET +R+ R G L+ M L D + + RP L+ R + Q Sbjct: 162 QHQDDQAETFLLRALRGSGIDG--LAAMSADSLLDGH-RLWRPLLQVPRSTLLDHARQHA 218 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRVKVNNAVAMLI 238 + W EDPSN DD +R +R V + + R ++ A LI Sbjct: 219 LRWIEDPSNGDDHADRNFLRLQVLPLLRQRWPHAAAALAGSALHCRQTRDLLDEEDAELI 278 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG--YRSMERVMLFLKS 296 + + + Q + + +LR + G LP + +L + Sbjct: 279 ---THLEVAPRVLSLQLLRQVSPGRAARVLRAWV-VGHGAAPLPATVLQQALDELLPADN 334 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356 ++ V I + + ++ + +L + WDGR +++ Sbjct: 335 DRQARVRWHDHAIQQWRDHAYLL----PVQLPVLPNDWQAEWDGRAPLPLPDGGQLRL-- 388 Query: 357 QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSR 395 Q + P + + + +P ++ L LAP+ R Sbjct: 389 QGIAAFERPLQVRARVGGERIQ-LPGRQHSHALKDCLQREHLAPWRR 434 >gi|323143578|ref|ZP_08078255.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066] gi|322416641|gb|EFY07298.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066] Length = 449 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 17/320 (5%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + F + + PA I V +SGG+DS L L + + + A H L Sbjct: 10 LNRLAFSLIHKLKPAPITVGLSGGADST--LALLVACKLQETDPRFSVLACHCIHGLDAD 67 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +++ D+C RL++ A+R+ RY + E+ +M Sbjct: 68 DPIWLKHCQDLCQRLKVKLVTPKLNIVYGNGVSPEDASRKERYRALLENLSPNG--YLML 125 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DDQ+E + + +R +G+G T+ D I RP L ++DI + L Sbjct: 126 GHQSDDQVENLLLALKRGSGPRGLGGM---STVTCDNRGTIIRPLLDLSKKDIENILTAL 182 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 W D SNT +FER +R V + L ++ + K K+ L +Y Sbjct: 183 GFDWVFDISNTYLKFERNFIRLKVLPL-LRQRFIGIDKAILKSAKLCAFEHDLASRYAET 241 Query: 245 HMRSIIA---ISQDILNIDSTLL-FYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GK 298 +A D ++I+ L F++LR S P + ++ +K+ + Sbjct: 242 FYTQAVADDIFYIDKIDIEDQALTFFVLRRFLFNF--LSSAPDFNTVAACYDLIKASNDQ 299 Query: 299 RGCVSIGRVVIDRRANFLWI 318 G V I R N L I Sbjct: 300 EGVVEFADKEIRRYLNTLRI 319 >gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571] gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571] Length = 332 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 17/307 (5%) Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86 SGG DS +L+ L + F +VDH LR A DE V +C L + H + Sbjct: 2 SGGPDSTAMLV-LARIWRYGLLDGPSFFVATVDHGLRPEATDEALAVGALCEELGLPHVI 60 Query: 87 VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 + W+ KP++G+ AAR+ R+AL+ A+ + AHT DDQ ETV R R Sbjct: 61 LPWRGPKPRSGIQEAARDERFALLRSFARQNGLDGLALAHTQDDQAETVLFRLCRGSGIG 120 Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR- 205 G+ + L + RPFL + + + L + DPSN D R+ R R+R Sbjct: 121 GLAAM---RPVSRRNGLAVLRPFLSIAKARLVATLAVSGTPFVRDPSNEDTRYARPRLRA 177 Query: 206 -------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 + L L + + D +A L+ ++ Sbjct: 178 ISPLLGAEGLDAARLAVLAQRAARADDALEAATDAAQKLLVHGGWDDEAGTRLDAEGFFR 237 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG----KRGCVSIGRVVIDRRAN 314 + + LL + + + + ER++ L++ R ++ ++ + Sbjct: 238 LPQEIALRLLMRALTLRATEGPV-ELAKAERLLEALRAAVIQPGRLRRTLAGALVTLKQG 296 Query: 315 FLWITRA 321 L I +A Sbjct: 297 SLSIVQA 303 >gi|225857820|ref|YP_002739330.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae 70585] gi|254789049|sp|C1C992|TILS_STRP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225721931|gb|ACO17785.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae 70585] Length = 425 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET++MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|15899960|ref|NP_344564.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae TIGR4] gi|111658620|ref|ZP_01409270.1| hypothetical protein SpneT_02000210 [Streptococcus pneumoniae TIGR4] gi|61217410|sp|Q97TC5|TILS_STRPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14971475|gb|AAK74204.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae TIGR4] gi|301793336|emb|CBW35695.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae INV104] Length = 425 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET++MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|225853622|ref|YP_002735134.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae JJA] gi|254789051|sp|C1CH91|TILS_STRZJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|225724064|gb|ACO19917.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus pneumoniae JJA] gi|332199078|gb|EGJ13159.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47901] Length = 425 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|167619503|ref|ZP_02388134.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis Bt4] gi|257138682|ref|ZP_05586944.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264] Length = 482 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 113/322 (35%), Gaps = 21/322 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + + A I +A SGG DS LL + R G + A+ V H L Sbjct: 2 LDAIGVALSAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++ L + + G+ A+AR+ RY + A + Sbjct: 57 ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 116 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 117 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241 + W +D SN D R+ R +R V L AL F+D + A L+ Sbjct: 176 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 231 Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 + +R++ +L+ +D LLR G S M + + Sbjct: 232 AAIDLRAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 291 Query: 295 KSGKRGCVSIGRVVIDRRANFL 316 + V + + + Sbjct: 292 RDAYALRVDHAGWRLRLYRDDI 313 >gi|149013373|ref|ZP_01834082.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75] gi|182682980|ref|YP_001834727.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14] gi|194398531|ref|YP_002036732.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54] gi|303254912|ref|ZP_07340997.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455] gi|303259737|ref|ZP_07345713.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293] gi|303262204|ref|ZP_07348149.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292] gi|303265400|ref|ZP_07351307.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397] gi|303266052|ref|ZP_07351946.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457] gi|303268460|ref|ZP_07354254.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458] gi|226695547|sp|B5E578|TILS_STRP4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695549|sp|B2IQZ8|TILS_STRPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|147762896|gb|EDK69844.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75] gi|182628314|gb|ACB89262.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14] gi|194358198|gb|ACF56646.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54] gi|301800984|emb|CBW33645.1| putative ATP-binding PP-loop family protein [Streptococcus pneumoniae INV200] gi|302598183|gb|EFL65244.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455] gi|302636844|gb|EFL67334.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292] gi|302639289|gb|EFL69748.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293] gi|302641961|gb|EFL72314.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458] gi|302644356|gb|EFL74609.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457] gi|302645077|gb|EFL75317.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397] Length = 425 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNIDVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|317968353|ref|ZP_07969743.1| MesJ-like protein [Synechococcus sp. CB0205] Length = 327 Score = 185 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 26/312 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+AVSGG DSM L+ L+ + + +H R A+ + R + Sbjct: 28 PLLLAVSGGQDSMALVGLLNDL---KRLHHWPLQLWHGNHGWRPEAEQQARELQAWAQDQ 84 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V W++ K A+AR+ RY + HA+ + ++T HT D+ ETV ++ Sbjct: 85 GLPIQVDDWESPKRD---EASARDWRYGQLQTHAQRLGCRRVVTGHTASDRSETVLLQLA 141 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G LS + + + RP L R D Q + DPSN+D RF Sbjct: 142 RGSHRRG--LSSLRQRRTLSGTIELVRPLLGFSRSDTVQLCEQLGLPIWLDPSNSDPRFS 199 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R R+R V L L + +++ +A + ++ ++ + Sbjct: 200 RNRIRHEV----LPVLEALHPGASERISQLSERLAQEQDGSEQLVDLALGSLQTETAQAQ 255 Query: 261 STLLFYLLRVSA----------AICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRV 307 L L + +SL +E+++ L + +S GR Sbjct: 256 PALKRRPLSSLTLSNQRLLLHHWLTRQGLSLGNAEQLEQLLHRLPPHCGPGQWDLSRGRS 315 Query: 308 VIDRRANFLWIT 319 + +W+ Sbjct: 316 -LRWNRELIWLE 326 >gi|227512322|ref|ZP_03942371.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577] gi|227084497|gb|EEI19809.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577] Length = 478 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 8/218 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++VAVS G DSM LL L L RS + VDHCLRE +K E ++ CS Sbjct: 30 DQPVVVAVSTGIDSMTLLYLL-EHLDQRS---PQIIVAYVDHCLREQSKRETVFIQQYCS 85 Query: 79 RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + W + PQ G+ AAARE RY K T+++TAH DD ET+ M Sbjct: 86 DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQVTVLLTAHHGDDLAETMLM 145 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R + L G+ + + RP L +++I F +I W ED +N D Sbjct: 146 KLVRGGQVE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNRDL 202 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +R R R + ++ F D ++ + Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLRHFVDYSKQLKTLIE 240 >gi|307729282|ref|YP_003906506.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003] gi|307583817|gb|ADN57215.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003] Length = 482 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 84/410 (20%), Positives = 136/410 (33%), Gaps = 36/410 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+V +L A + VA SGG DS LL A V G + A+ V H L Sbjct: 14 LEAVGVAFAALPVHARVAVAFSGGVDSGVLLDAAVRVA-----GASRCMALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + + + + AAAR+ARY + T + Sbjct: 69 ADAWLTHCEAFARERGVEFAARHVEVLRDAGISVEAAARDARYQALDALCATHGIQWLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + RP L R I + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-TEFAPAGAAAVRVRPLLHLLRAQIEQYANAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML------- 237 ++ W +D SN D R+ R +R V AL + F+D + + A Sbjct: 188 HLRWIDDESNADTRYARNALRHEVTP----ALAIHFPGFRDALARTASHAASAQRLLDEL 243 Query: 238 --IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 I L ++ +D LLR + G + + L+ Sbjct: 244 ARIDLELASRDEGRALSHHALIALDDERALNLLRYWMRLQG--FVPASSARLGDALRQLR 301 Query: 296 S------GKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDG--RYQ 343 G R V + ++ R + L W G ++ Sbjct: 302 EVGTSGDGHRLRVDHAGQALRCYRGLVYWEAGDSRDPADETALAAREVSELAWSGEATWR 361 Query: 344 FQNLSDSLI--QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + + R A + +P + QRAL S S+ GG+ + Sbjct: 362 VPQWRGTFVFEALDASHARTAASEAAVPVSVLQRALLSARSRRGGERMRT 411 >gi|167957510|ref|ZP_02544584.1| putative cell-cycle protein [candidate division TM7 single-cell isolate TM7c] Length = 275 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 34/282 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ A+SGG DS+ LL L + + V+H +R + ++ +V + ++ Sbjct: 2 LIAAISGGVDSIVLLDLLS-----KRYKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + AR+ RY + + +K NA I+TAH DD +ET+ + R Sbjct: 57 MRYRQIDLNLGLHAS--EEVARDQRYTFLRKLSKEFNA-KIVTAHHADDIIETIAINLVR 113 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + D I RP + D+ + + + W ED +N+ D + R Sbjct: 114 GTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDLYLR 164 Query: 202 VRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R+R+ ++ ++ L + + +N A + L Sbjct: 165 NRLRKRIKTLNPSIKQNLIQLWRNQTKIARDINKETAKFSKNSRYFY-----------LM 213 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 I + + +LR G + P + +++ +K+ K G Sbjct: 214 ISNDVAVEILRNFLLNKGIAQTRP---QLNDILISIKTAKAG 252 >gi|313899743|ref|ZP_07833246.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2] gi|312955358|gb|EFR37023.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2] Length = 406 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 16/256 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + ++ VSGG DSM LL + +++ R+TA ++ V Sbjct: 7 LEKGTYIIGVSGGPDSMALLDMCRK-------EGFQLVVAHMNYKKRDTADRDMELVRSY 59 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C+R I + A ARE RY + E + A ++ AH DD LET Sbjct: 60 CARFHIPFEA-RLQTKPCVGNFQAFAREERYRMYRELLQKYQAAAVLLAHHLDDHLETYL 118 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M +R ++ +G+ + I RP + + ++ ++ + + + D SN Sbjct: 119 MAKERGSMKEYLGIQEEACI----MGCTIIRPLMAYSKRELEAYCRENAVPFGIDESNLT 174 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 D + R R+R + + + K K+ + N + + S + + Sbjct: 175 DHYARNRIRHEI----VDRMSEKEKEALMEIISRENMRMQQLRADCRAFLNSWDGSLKKL 230 Query: 257 LNIDSTLLFYLLRVSA 272 +DS L +L Sbjct: 231 RVLDSYFLEQVLITWI 246 >gi|170733430|ref|YP_001765377.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3] gi|169816672|gb|ACA91255.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3] Length = 473 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 27/396 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L AHI +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVSVALSGLPPDAHIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RY + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYTALDEMGERHGVAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ +++ RP LR R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237 ++W +D SN D R+ R +R V L AL + F+D + L Sbjct: 188 ALTWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 238 IPKYLTVHMRSI-IAISQDIL-NIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 V R A+S+D L D T LLR G S +M R + Sbjct: 244 AELDFAVAARDDGHALSRDALVGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T PE WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGQEVWHLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384 + + + VP + A + + Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399 >gi|237756505|ref|ZP_04585036.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691334|gb|EEP60411.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense SS-5] Length = 452 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 120/312 (38%), Gaps = 24/312 (7%) Query: 4 SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++VR F +L+ ILVA SGG DS+ L L + +I+ ++H L Sbjct: 5 KFLKAVRKF--NLIENQDKILVAFSGGPDSLVLTNLLLKFQKTLNILEIQL--AHLNHAL 60 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTIN 118 R+ + + + S L + V + + + A R RY ++ + N Sbjct: 61 RKESDQDQEFCEKFASSLGLKIHVKKVDVKKVAKELKISVEEAGRLERYKFFNKILQKEN 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + I T H D E++ + + G+ + N I RP +E+I Sbjct: 121 LSKIATGHHLSDLTESIVLWFIQGNKR------GLKGFSPKENN--IIRPLYLITKEEIE 172 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235 + + + + D SN ++ R +VR V I L M + + Sbjct: 173 EYCQKNGLVYLVDQSNFSRKYLRNQVRLDVIPILKKINPDLENSMLNLSQFSYFDESYLD 232 Query: 236 MLIPK-YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 L + Y + ++++ +S + N+ + L + LL I + P Y+ + +M L Sbjct: 233 KLTEEYYSKLDNKNLLDLSF-VNNLPNALKYRLL--IKWIYENTNTYPSYKQILSLMEIL 289 Query: 295 KSGKRGCVSIGR 306 + + I R Sbjct: 290 DKQGQKEIKISR 301 >gi|307705917|ref|ZP_07642755.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597] gi|307620578|gb|EFN99676.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597] Length = 425 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 33/271 (12%) Query: 3 LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + + F++ + H +++A+SGG DSM L L + + I+ V+H Sbjct: 1 MREQDFLNHFLKKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R + E + + + + + + + A AR RY E K AT Sbjct: 58 KQRVESDWEEKELRKLAAEAELPIYISDFSGEFS----EARARHFRYDFFQEVMKKTGAT 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++TAH DDQ+ET+ MR R + LSG+ + + + + I RPFL +++D Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGV-IEIIRPFLHFQKKDFPP- 169 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 I ED SN + + R R+R L L + +F+D + + N + Sbjct: 170 -----IFHFEDTSNKKNHYFRNRIRNS----YLPELEKENPRFRDSILSIGNEI------ 214 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + +AI++ NID L LL S Sbjct: 215 -----LDYDLAIAELSKNIDVENLEQLLSYS 240 >gi|61216750|sp|Q9RV23|TILS_DEIRA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 582 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 116/291 (39%), Gaps = 32/291 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV VSGG+DS+GLL AL +V + + +DH LR + D+ +VSD+C+ Sbjct: 38 GRQVLVGVSGGADSVGLLRALLAVGALPA-------VAHLDHALRPESVDDAAWVSDLCA 90 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 RL + V ++ L AAR RY ++S AK A +I+TAHT DQ ET Sbjct: 91 RLGVPCEVTRIDVGAVAARRNWNLE-AARRLRYDVLSRAAKHSGAEVILTAHTRRDQAET 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V M R + + RP+L R +I ++L W ED SN Sbjct: 150 VLMELLRGEGRI---------RGIPPQRGRVRRPWLNVGRAEIETYLRGLGQDWREDASN 200 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D RF R +RR V + L +F + + + + Sbjct: 201 ADPRFTRAWLRREVMPVLLT-------RFPAAETALAQVAELGAEDDAALQALAARLTPH 253 Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 L +L L + GG + + L +G+ +++ Sbjct: 254 TPLDRQPPAVLRRWLA-AELRSGGLDFTA--EQLRDLAGALNAGQTRHLTL 301 >gi|306826197|ref|ZP_07459532.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431673|gb|EFM34654.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 425 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 23/257 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + + +++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLQKEYFKKH----SKVVLALSGGLDSMFLFQLLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + S+ A ARE RY + K AT Sbjct: 59 QRSESDWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEAGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + L+G+ ++ + D + I RP ++D L Sbjct: 115 LVTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIEIIRPLFHFHKKDFPPIL 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMK--KFQDLRVKVNNAVAMLI 238 ED +N ++ + R R+R ++ +++ LK F A+ L Sbjct: 172 ------HFEDQTNQENTYFRNRIRNRYLPELEKENPRLKSALLDFGREISDYQVAITELS 225 Query: 239 PKYLTVHMRSIIAISQD 255 + + + + SQ Sbjct: 226 KQIDVEDLNELFSYSQQ 242 >gi|332071333|gb|EGI81828.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17545] Length = 412 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|256852015|ref|ZP_05557402.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 27-2-CHN] gi|260661416|ref|ZP_05862329.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 115-3-CHN] gi|282933687|ref|ZP_06339045.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|297205113|ref|ZP_06922509.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16] gi|256615427|gb|EEU20617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 27-2-CHN] gi|260547871|gb|EEX23848.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii 115-3-CHN] gi|281302177|gb|EFA94421.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|297149691|gb|EFH29988.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16] Length = 412 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 15/220 (6%) Query: 6 IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ ++ F+ I+VA S G DS+ L+ L + ++ DH + Sbjct: 1 MDKLKQFLTDYNLDFKNKTIIVACSAGPDSLALVDMLKNW-------PLRLIVAHFDHQI 53 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R+ + E + C + + V W+N++ +T AAAR+ARY+ + AK A + Sbjct: 54 RQDSYLETELLEQYCKQNELPLYVKKWENNQNKT--EAAARKARYSFLLALAKEKQADYL 111 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH DD LE + ++ R M + + + RP L + ++ +LL Sbjct: 112 LTAHHGDDYLENIILKLIRSGDPAEMSSLQAVGQM---EGVKLVRPLLYYSKSELTKYLL 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 +++++ D +N + R R+R + + +K Sbjct: 169 DKHLAFITDETNLTNENLRNRIRHQLIPLLKEENPTILKN 208 >gi|57233795|ref|YP_182129.1| PP-loop family protein [Dehalococcoides ethenogenes 195] gi|57224243|gb|AAW39300.1| PP-loop family protein [Dehalococcoides ethenogenes 195] Length = 470 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 129/319 (40%), Gaps = 28/319 (8%) Query: 7 ESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V +++ IL+AVSGG DS+ +L +H + + F ++H LR Sbjct: 3 ERVSRYIKQQGMVSDGDEILLAVSGGPDSVCMLYIMHKLSCEMGF---SLRLAHLNHSLR 59 Query: 64 -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 E ++ + YV+++ + L + V ++ AARE RYA + A Sbjct: 60 GEESERDAAYVAELAAALGVPLCQQKVSVKAYQAEHHLSTEEAAREMRYAFLCRTAAEYG 119 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSG-MCDTILYDLNLWISRPFLRCRRED 176 + + HT DD +ETV + R +G+ GL + T+ + L + RP L R + Sbjct: 120 SAAVAVGHTTDDNIETVMLHLVRGSGTRGLQGLRPVLNRTVAGEGCLRVIRPLLGLSRAE 179 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234 +++ + +S +D +N R R+R V L L F++ LR Sbjct: 180 TQNYCCEAGLSPVQDVTNQSTDLLRNRIRLEV----LPMLRGINPAFEETILRTAFIAGE 235 Query: 235 AMLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGYR 285 M + +T M++ + I QD + + L LLR G + R Sbjct: 236 EMALLDEVTSQMKAELVIRQDNVLMIEKIEMQRLHPALKRNLLRQMLEELLGGLKDIEAR 295 Query: 286 SMERVMLFLKSGKRGCVSI 304 +E ++ L + + Sbjct: 296 HIESIIQTLDKPAGRRIDL 314 >gi|116515015|ref|YP_802644.1| hypothetical protein BCc_073 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256869|gb|ABJ90551.1| tRNA(Ile)-lysidine synthetase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 435 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 156/368 (42%), Gaps = 37/368 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF+ + + L+A+SGG DS L L ++ + F +I F I ++H Sbjct: 1 MFIKKL------FKKYPTKKKFLLALSGGVDSTVLFYQL--IIWKKKFQEINFRTIHINH 52 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINA 119 L AK ++ ++C + +I + K G+ +R R + + + Sbjct: 53 HLHSHAKLAQKHCINICKKNKIEIKIFDIIIPKKNKYGIEGYSRLERLKIFKK--NILPE 110 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +++T H +D E +++ +R G +SGM YD N+ I RP + ++E+I Sbjct: 111 EILLTGHNMNDLCENIFLSLKRKSGING--ISGMNFYSKYD-NIKIIRPLINIKKENILF 167 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AM 236 + ++ I W ED SN +++++R +R + L +YLK F +K N + Sbjct: 168 WAKKKKIKWIEDQSNKNNQYDRNFIRNKI----LSKIYLKWPYFLKNSIKSINLLKKDKK 223 Query: 237 LIPKYLTVHMRSIIAISQ--DILNIDSTLL---FYLLRVSAAICGGQISLPGYRSMERVM 291 ++ +L+ ++ I + + ++N D+ +L F +L++ I P Y ++R+ Sbjct: 224 ILNYFLSKFLKKNIYLDKTLSLINFDNLILEAKFSILKMWLYNNSQII--PTYYIIKRIY 281 Query: 292 LFLKSGK---RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348 L + + + I R ++ + ++LY W +Q L Sbjct: 282 NELIDNENYFNKKILFQKKEIRRYKKNIYYINPEKKEKKIVLY------WKNIFQKIKLP 335 Query: 349 DSLIQIGP 356 + L + Sbjct: 336 NKLGYLIA 343 >gi|160916165|ref|ZP_02078372.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991] gi|158431889|gb|EDP10178.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991] Length = 404 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 20/252 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL + V++ RE+A +++ V D C + I Sbjct: 11 IIGVSGGPDSMALLDMCRR-------HGVSMVVAHVNYQKRESAARDMQIVQDYCKQYGI 63 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--SQ 140 A V +N + A AR+ RYA + +A ++ AH DD +ET M+ ++ Sbjct: 64 ACEVY-MQNKQCTYNFQAFARDVRYAFYRSLCEIYHAQGVLLAHQMDDHIETYLMQKETK 122 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + G+ G+ L + + RP L ++ + + Q + + D SN D + Sbjct: 123 RLGSYYGIRKKGIV------LGVKVYRPLLTKSKKQLEEYCAQHGVEYGIDESNLSDDYA 176 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R R+R V D + + K A+ + +L+ SI ++ +++ Sbjct: 177 RNRMRHHVVDKMTTKEKQALCDTIEQENKAWQALCLKCQSFLSTWNGSIASLQ----DLE 232 Query: 261 STLLFYLLRVSA 272 +L +L Sbjct: 233 EEMLMQVLAQFI 244 >gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8] gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8] Length = 507 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 30/321 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + R + L +++AVSGG DS+ L + + + +DH LR Sbjct: 3 VPAFRERLLRLAPKDPLVLAVSGGGDSVALALLVKEAGR-------QAVVAHLDHGLRPE 55 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121 + + +V + RL + ++ L A ARE RYA + A+ + A Sbjct: 56 SPLDQAFVRALAERLGFPFFTERVEVARIAQARGENLEAVAREVRYAFLHRVAREVGARA 115 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TAHT DDQ ETV ++ + A T + + + RP L RE++R++L Sbjct: 116 ILTAHTLDDQAETVLLQLLQGTA---------RATGIREREGIVVRPLLAHTREELRAYL 166 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238 R +W EDP+N D +R +R FV + A + +F + R + + Sbjct: 167 RARGEAWREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRALARFAEARAEEEGVLERQA 226 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG- 297 L R + + +++ L + + G R R++L L+ Sbjct: 227 EARLLPDPRFFVPAFRAAPLLEAPLAVRRRALRR-----LLEKLGLRPEARLVLLLEEAL 281 Query: 298 -KRGCVSIGRVVIDRRANFLW 317 R G V+ R+ L+ Sbjct: 282 RGRPQTLPGGVLARRKGGTLF 302 >gi|85713119|ref|ZP_01044153.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] gi|85693067|gb|EAQ31031.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] Length = 447 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 123/320 (38%), Gaps = 26/320 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 LV ++VA+ GG+DS +L L+ + ++ AI +DH + + + Sbjct: 18 HLVPGQQLVVALGGGADSQTVLDCLNRFRQAN--PQYEYLAIHLDHHFHPQSPAWAKTIK 75 Query: 75 DVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +A H K + A RE RY ++E T + +I+ +DQ+E Sbjct: 76 GSVESYGMASHFEDLIFIEKNRVSKEAMGRERRYQRLAEL--TADNAIILLGQHRNDQIE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ +R +G L+ M + + + RP L ++ I + + ++W ED + Sbjct: 134 TFLLQLKRGSGPRG--LASMAEVQPFVGQRKLVRPLLEVSKQAILKYAHEHQLTWIEDNT 191 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250 N D R ER +R V + L + +F ++ A L+ + L + + Sbjct: 192 NYDTRIERNYLRHKV----IPQLEQRWPQFGQSVLRSAALCAEQDALLDELLADKLNNAW 247 Query: 251 AISQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGK 298 ++ + L +R G +P + ++ L + Sbjct: 248 CSHAWLNIGLSLTELAHFSEPLQRAAIRYWLTHQTGCERMPSQAQLHQICQQALSAANDA 307 Query: 299 RGCVSIGRVVIDRRANFLWI 318 + V++ + R AN LW Sbjct: 308 KVAVNLASGCVYRFANALWW 327 >gi|284051178|ref|ZP_06381388.1| tRNA(Ile)-lysidine synthetase [Arthrospira platensis str. Paraca] Length = 348 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 126/330 (38%), Gaps = 26/330 (7%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V +RS L +LVAVSGG DSM L+ L + ++ + + DH R Sbjct: 16 AKVHRSLRSRNLLPCGEALLVAVSGGQDSMCLIRLLLDLQGKWNW---RMAIAHCDHQWR 72 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + Y+ ++ ++ ++ AAARE RY ++ E A+T N ++ Sbjct: 73 RDSVANADYIEELGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 129 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180 T HT D+ ET+ R G+ I + RP L R++ F Sbjct: 130 TGHTKSDRAETLLYNLIRGSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEF 189 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIP 239 QR++ ED +NTD + R R+R + + K+++ + V L Sbjct: 190 CQQRDLQIWEDSTNTDVSYARNRIRHQLIPELANKFNPKVEQALAQTAELLRADVEYLEQ 249 Query: 240 KYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + ++ ++ + + + L ++R + + + +E++ Sbjct: 250 EADELYSLAMAPAPCNNSYGVNRHKLKSAPLALQRRVMRRFLEEVLRKGT--NFEQVEKL 307 Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWI 318 +++ + + G + ++W+ Sbjct: 308 TRLIYAPNRSQSDPFPGGAIAQVEGEWIWL 337 >gi|296158958|ref|ZP_06841786.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1] gi|295890833|gb|EFG70623.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1] Length = 476 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 77/411 (18%), Positives = 136/411 (33%), Gaps = 28/411 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE+V F + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 IEAVGFSLSRLSATARIAIAFSGGVDSSVLLDAAVRVA-----GASRCVALHVHHGLSAH 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + S+ + AAAR+ARY ++ + + Sbjct: 69 ADAWLAHCDAFARERGVEFAAERVVVSRDTGVSVEAAARDARYRVLEGMCASRGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + + RP L R + + +R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYLPAKASATRVRPLLHLLRAQLEQYASER 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SN D R+ R +R V L + + + L+ + + Sbjct: 188 ALRWIDDESNADTRYARNALRHDVMP-ALAVHFPGFRDALARTAAHAASAQRLLDELARI 246 Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 M + L+ D+ L+ Y +R + L R + Sbjct: 247 DMEATSRDEGRALSHDALLALDDDRALNLMRYWMRTLGLAAASSVRLGDALRQLREIGAA 306 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 G V + ++ + L W G ++ Sbjct: 307 GEGHALRVDHAGHALRSYRGLVYWESGDSSEPADETALAPRAVSELAWQGESVWRLPQWR 366 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 + + + P +P + + A+ S S+ GG+ + +R Sbjct: 367 GTFVFADAAAGE----PDAMPISLLRGAVLSARSRSGGERMRTGAARNAPG 413 >gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis K5] gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis K5] Length = 535 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 121/320 (37%), Gaps = 27/320 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I +A SGG DS+ L + + + V+H L+ + +V++ Sbjct: 38 LQGRRIWLACSGGRDSLALAALCVQLYQQGRLPFLP-QLLHVNHGLQADSAIWAAHVANW 96 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +I +++ + AAR+ARY ++ A+ +++ AH DDQ ETV Sbjct: 97 AKAQKIPCTILQAHVNGHD---EQAARQARYDVMR--AQLNQDDVLLLAHHADDQAETVL 151 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR + G+ D + I RP+L +R I S+ + + + +DP+N Sbjct: 152 MRLIQGAGVNGLSGMHPWRVQTQDAHRIIVWRPWLIVQRASISSYAKRLKLPYIDDPTND 211 Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 R +RR + + + + + D ++ V A + + + ++ Sbjct: 212 GGDNVRSGLRRDIMPVLAKYNPNVIDNIARSAQLLSDAQLTVKAQAAEDLKQTEVISLQL 271 Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYRSMER--VMLFLKSGKRGCVS 303 A Q +LNID L R + G LP + + + L + Sbjct: 272 PSA--QRVLNIDELQKLPLYRQRQLLHYWLGQDEPLPPAKQLVDDVLSLSQRHDHDHQTE 329 Query: 304 I---GRVV---IDRRANFLW 317 + GR I R L+ Sbjct: 330 LFWQGRKQSYTIRRYRQQLY 349 >gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] Length = 507 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 30/321 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + R + L +++AVSGG DS+ L + + + +DH LR Sbjct: 3 VPAFRERLLRLAPKDPLVLAVSGGGDSVALALLVKEAGR-------QAVVAHLDHGLRPE 55 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121 + + +V + RL + ++ L A ARE RYA + A+ + A Sbjct: 56 SPLDQAFVRALAERLGFPFFTERVEVARIAQARGENLEAVAREVRYAFLHRVAREVGARA 115 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TAHT DDQ ETV ++ + A T + + + RP L RE++R++L Sbjct: 116 ILTAHTLDDQAETVLLQLLQGTA---------RATGIREREGIVVRPLLAHTREELRAYL 166 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238 R +W EDP+N D +R +R FV + A + +F + R + + Sbjct: 167 RARGEAWREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRALARFAEARAEEEGVLERQA 226 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG- 297 L R + + +++ L + + G R R++L L+ Sbjct: 227 EARLLPDPRFFVPAFRAAPLLEAPLAVRRRALRR-----LLEKLGLRPEARLVLLLEEAL 281 Query: 298 -KRGCVSIGRVVIDRRANFLW 317 R G V+ R+ L+ Sbjct: 282 RGRPQTLPGGVLARRKGGTLF 302 >gi|126640676|ref|YP_001083660.1| cell cycle protein [Acinetobacter baumannii ATCC 17978] gi|126386560|gb|ABO11058.1| cell cycle protein [Acinetobacter baumannii ATCC 17978] Length = 427 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 132/324 (40%), Gaps = 27/324 (8%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90 DSM LL + + + AI +DH L++ + + V+ + L I + + + Sbjct: 2 DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55 Query: 91 NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150 + L A AR+ARY +H + +++ AH DQ ETV +R G+ Sbjct: 56 IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111 Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 D Y ++ I RPFL RE I + Q + + +DP N D ++RV R + Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP 168 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT---VHMRSIIAISQDIL-NIDSTLLFY 266 L + + KM++ + + ++ + L + S + L + Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLYELSFARQRQ 227 Query: 267 LLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW-ITRA- 321 LL SA + G P + +ER+ ++ KS + + + R N L+ ++R Sbjct: 228 LL--SAWMKGQGQYRPAFEMVERLRTEVIESKSDAQAALHWNQFYYVRYQNILYRLSREV 285 Query: 322 --VRNLPTLILYPEETTVWDGRYQ 343 L ++ E + + R+Q Sbjct: 286 YLAETLNPVVAELEHSFKLEERWQ 309 >gi|169351463|ref|ZP_02868401.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552] gi|169291685|gb|EDS73818.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552] Length = 414 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 16/242 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V VSGG DSM LL + + V++ LR + + + V D C I Sbjct: 15 VVGVSGGCDSMALLDIMQK-------KGYRMVVCHVNYHLRNDSDLDQKTVEDYCKMHDI 67 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A V + + ARE RY E A N ++ AH DD +E + M+ QR Sbjct: 68 ACFVKEIDSKLYSKENFQMQARELRYQFYREIANKYNTNEVVLAHHLDDVIENIVMQLQR 127 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + +G+ + D + + RPFL R++ +R++ N+ + +D +N + F R Sbjct: 128 NNTKGYLGIKDVSDVF----GVVVIRPFLEVRKQALRNYCHDYNVFYRDDYTNFETDFTR 183 Query: 202 VRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 VR + + L ++ K + +K V + I +Y M I ++L Sbjct: 184 DFVRNVTLKKYSEKQIEELLIQAKHHNERYLKNLELVQVYIHQYHQKEMIDYHLIPDNLL 243 Query: 258 NI 259 Sbjct: 244 EC 245 >gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216] gi|167659086|gb|EDS03216.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216] Length = 448 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 125/327 (38%), Gaps = 33/327 (10%) Query: 3 LSPIESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ +++ + ++R L P IL+ VSGG DSM +L + + Sbjct: 1 MNLLDNFQRYIRRNELAAPEDFILLTVSGGVDSMVMLSLFVR-------SGYRVGVAHCN 53 Query: 60 HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHA 114 LR ++++ V + + + + AAR RYA E + Sbjct: 54 FQLRGVESEEDEELVRREAEKYGVPWYNKRFDTKGEMERTGESMEMAARRLRYAWFDELS 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + T++ AH DD +ET ++ R +G+ T + + RP + R Sbjct: 114 REHGYTVVAIAHHIDDSIETFFINLLRGTGLRGL-------TGITTHAGKLIRPLMFASR 166 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLR 227 +DI + + ++I + ED SN ++ R ++R + + + + + D + Sbjct: 167 KDILEYAVAQHIPYREDSSNRSTKYLRNKIRLGLVPRIKEISPKFTDLMRQNIGRLTDAQ 226 Query: 228 VKVNNAVAMLIPKYLTVHMR-SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + +N+ + + + +T I I + + + L S G +S R+ Sbjct: 227 LFINHGIQRIREEVITTENGIDTIHIDRIDRAFPLNFVIFELLNSTYSFKGDVSDALVRA 286 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRA 313 +E+ +GKR IDR Sbjct: 287 LEQ---NSGTGKRFYSKSHVAYIDRGR 310 >gi|332198875|gb|EGJ12957.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47368] Length = 412 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + A ++A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + + + ++ A AR RY E K AT Sbjct: 59 QRIESDWEEKELRKLAAETELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + LSG+ + + + I RPFL +++D S Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN ++ + R R+R L L + +F+D + + N + Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + Q + + + LL+ ++ + +++++ + Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281 Query: 301 CVSIGRVVIDRRANFLW 317 + ++ + + + Sbjct: 282 IKNGYELIKEYQQFQIC 298 >gi|193212239|ref|YP_001998192.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327] gi|193085716|gb|ACF10992.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327] Length = 334 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 63/298 (21%), Positives = 110/298 (36%), Gaps = 28/298 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +LVAVSGG DSM LH +++ ++ + LR E + + +V C+ L Sbjct: 24 VLVAVSGGPDSM---ALLHLLVAAAPVLHLRLGVAHCNFGLRGEESDGDEAFVRYECAGL 80 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V + + + AR RY E + LI T H D ET+ Sbjct: 81 GLDFHVRRFDTKAVATTWKKSIEETARLLRYDFFEELCREKGYELIATGHHSGDNAETML 140 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R A G+ + + RP + R++I S+L +++I+W D +N Sbjct: 141 FNLFRGTAASGL-------RGIRMRQGRLIRPLIPFSRQEIVSYLDEKSIAWRTDRTNAG 193 Query: 197 DRFERVRVRRFVRDIDLHALYLKM--------KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +R +R V + LK+ + +L + + LI + + Sbjct: 194 LEHDRNYIRNRVIPVIEERFSLKLTASLQRVAEHAGELEEFMERHIDRLIEERPGLDPAG 253 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIG 305 +L + L++ + G LP R + R+ L+S V G Sbjct: 254 GKLHVGSLLELSRFERKALIKRVLQMRG----LPVESRVLSRIAGLLESQPGRRVHAG 307 >gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1] gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1] Length = 341 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 135/327 (41%), Gaps = 16/327 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA I++AVSGG DS+ L+ + G S ++VDH L Sbjct: 9 VSATEARGLFGDWKAAPA-IVLAVSGGPDSLALMWLVARWRKALKRGP-SLSVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + + L + H + W+ KP +G+ AAAR+ARY L++E A+ AT I Sbjct: 67 RAEAAREARAVKRLATSLDLPHRTLRWRGDKPASGIQAAARQARYRLLAEAARRAGATHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R G+ ++ + RP L + + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGIAGLAAM---SRQTARDDIVLVRPLLDVPKARLLATLA 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLI 238 + I + DPSN D RF R R+R + + ++ + Sbjct: 184 KARIDFATDPSNADPRFARPRLRELMPLLAAEGCDARSLARLASRAARADAALERMTDGA 243 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS--LPGYRSMERVMLFLKS 296 +YL + D + +R+ + Q P +E ++ L+S Sbjct: 244 ERYLELLNAEPRRRGVDAAAFTALPAEIRIRLLMRVLSSQGYEGPPQLGKVETLVTALES 303 Query: 297 GKRGCV-----SIGRVVIDRRANFLWI 318 V ++ V+ L I Sbjct: 304 AMSEAVPRLKQTLAGAVVTLGGERLVI 330 >gi|196230473|ref|ZP_03129335.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428] gi|196225403|gb|EDY19911.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428] Length = 311 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 127/313 (40%), Gaps = 15/313 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 L+ VSGG DS+ LL LH+ G + +DH LR + + ++V + Sbjct: 7 PEERCLIGVSGGRDSVALLHQLHAA------GFRELIVCHLDHALRAESVADAQFVEKLA 60 Query: 78 SRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L A V+ + + L AREAR + + A+ + + AH DDQ+E Sbjct: 61 RKLDYAFVLQREDVATLAKQRKKSLETTAREARISFFTHVAREHDCPRLFLAHHADDQVE 120 Query: 134 TVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ R G+ +S + + + L ISRPFL RE+I +++L+ +S+ ED Sbjct: 121 TLLFNLFRGAGAAGLAGMSALSTRTIDGVTLQISRPFLGTWREEIEAYILRHKLSFVEDA 180 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN+D +F R R+R + + A +++ ++ A L L + Sbjct: 181 SNSDRKFTRNRLRHDIIPVLEQAFGRDIRRSIWRSAEILRAEDDLFADLLGNTPPELSV- 239 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 + + LR + G G+ +E V LK G RR Sbjct: 240 -PALAAEPIAIQRRRLRAWLKLHGVAD--IGFEEVEAVRALLKGGTAKANLPRGWHARRR 296 Query: 313 ANFLWITRAVRNL 325 A L++ L Sbjct: 297 AKRLFLEPPRNGL 309 >gi|256370688|ref|YP_003108513.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri SMDSEM] gi|256009480|gb|ACU52840.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri SMDSEM] Length = 438 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 18/212 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 ++ I VAVS G DSM +L L + I + LR + + + ++ Sbjct: 16 ILKNKKIYVAVSSGLDSMVMLDLLLKSCNH------PIGVIHCNFNLRGDDSDKDEFFIQ 69 Query: 75 DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + C + + ++K K + + AR+ RY I H DD Sbjct: 70 EFCLKNNLNFKSKNFKTPTIRRKTKFSIQMIARKLRYDWFKFLLNNSYCDYIALGHHLDD 129 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET ++ R G G+ G+ + N I RP +++IRS+ + NI W E Sbjct: 130 SIETFFINIIR-----GTGIKGLIGINNFKKN--IIRPLFLFSKKEIRSYAKENNIHWRE 182 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 D SN D ++ R ++R F++ I + Y KK Sbjct: 183 DISNNDLKYLRNKIRFFLKPILNYKFYNGFKK 214 >gi|237735418|ref|ZP_04565899.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381163|gb|EEO31254.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 590 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL ++ + V++ LRE + + + V C R + Sbjct: 6 ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 58 Query: 83 AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V AR RY E ++ AH +D +E + M+ QR Sbjct: 59 PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 118 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +G+ + + + + RP L R++ +R + N+ + +D +N F R Sbjct: 119 HNTKGYLGIQEISEVF----GVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 174 Query: 202 VRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 VR ++D D + +K Q+ + + + L H ++ I + + Sbjct: 175 DYVRNVTLKDYDEEKIEKLLKWAQEHNQRYASKLKQLQIYLDLYHQKNKIDYTCIPKELL 234 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 ++ +L+ L ++ ++ +KS K Sbjct: 235 DGFIYEILKEVVY-----PPLISNALIKEIIKQIKSNKP 268 >gi|167754850|ref|ZP_02426977.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402] gi|167704900|gb|EDS19479.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402] Length = 599 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL ++ + V++ LRE + + + V C R + Sbjct: 15 ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 67 Query: 83 AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V AR RY E ++ AH +D +E + M+ QR Sbjct: 68 PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 127 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + +G+ + + + + RP L R++ +R + N+ + +D +N F R Sbjct: 128 HNTKGYLGIQEISEVF----GVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 183 Query: 202 VRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 VR ++D D + +K Q+ + + + L H ++ I + + Sbjct: 184 DYVRNVTLKDYDEEKIEKLLKWAQEHNQRYASKLKQLQIYLDLYHQKNKIDYTCIPKELL 243 Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 ++ +L+ L ++ ++ +KS K Sbjct: 244 DGFIYEILKEVVY-----PPLISNALIKEIIKQIKSNKP 277 >gi|260889219|ref|ZP_05900482.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254] gi|260861279|gb|EEX75779.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254] Length = 450 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 17/223 (7%) Query: 6 IESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE +R + + IL+A SGG DS+ L L + ++ ++ S ++H LR Sbjct: 5 IEKIRGSHKKKLISEKDKILIAFSGGPDSVFLYHLLDLM---KNMISLEISIAYINHNLR 61 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 +++++++++ S+ + H + V ++ + + AARE RY I K I Sbjct: 62 YDVENDLKFINEFASKNNVNHYIESINVKKYAAENKKSVELAARELRYETIENIRKKIGY 121 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I T H DD +ET R R + GL G+ I RP L + +I S Sbjct: 122 NKIATGHNLDDNVETFIFRLLRGTSV--TGLKGIPRVRE-----NIVRPILDFEKSEILS 174 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 FL +N + D +N ++ + R +R + D + +K Sbjct: 175 FLRSKNYQYLVDYTNNENDYTRNFIRNKIFP-DFEKINPAFRK 216 >gi|145220203|ref|YP_001130912.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris vibrioformis DSM 265] gi|145206367|gb|ABP37410.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeovibrioides DSM 265] Length = 329 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 126/330 (38%), Gaps = 31/330 (9%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 +E +R VR LV +LVAVSGG DSM LL +V + + LR Sbjct: 9 LEQIR--VRRLVMDGEPLLVAVSGGPDSMALLSLFLAVQP---VLHCRLGVAHCNFGLRG 63 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINA 119 + + +V + C RL + V + + + + +AR RY K+ Sbjct: 64 PDSLADEAFVREACRRLGLECFVARFDTELYCREHRLSIEESARTLRYDYFGRLMKSEGF 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + T H D ET+ R ++ + + + I RP L + DI Sbjct: 124 TKVATGHHVADNAETILFNLFRGTSQPSL-------RGIRSRHGSIIRPMLLLHKADILG 176 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM--------KKFQDLRVKVN 231 +L ++ + + D SN D +R +R V + L K+ ++ +L + Sbjct: 177 YLREKGMRYRIDRSNESDSHDRNFIRNRVIPLLLERFPDKLMPSLQRLSEQSGELEEFLE 236 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 +A+ LI + + + + +L+ + G + ++R++ Sbjct: 237 SAMDGLIEREPGLQPAQGWLDVAALKTLTVFEQKEVLKRALREHGYSVDA---VLLQRLV 293 Query: 292 LFL--KSGKRGCVSIGRVVIDRRANFLWIT 319 L + G+R + G V+ + +++ Sbjct: 294 DLLTTQPGRRVMLEGGGEVVWKDRRLCFLS 323 >gi|114320993|ref|YP_742676.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|122311407|sp|Q0A7K1|TILS_ALHEH RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|114227387|gb|ABI57186.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 445 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 17/317 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ + L + VA SGG DS LL + ++ + R + A+ + H L+ A Sbjct: 10 ETLARHLAVLGPASGYCVAYSGGLDSTVLLHLMAALSAARE---LPLRAVHIHHGLQPQA 66 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + L + V+ + + GL AAAR+ARYA ++ H ++ ++TA Sbjct: 67 DAWAEHCRQQAAALGVDCLVLPVEVRRDSGEGLEAAARQARYAALASHLQS--GEALLTA 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ ETV + R +G L+GM + RP L RE +R++ Sbjct: 125 HHADDQAETVLLHLLRGSGPRG--LAGMRAQRPLGRG-RLLRPLLPWPRERLRAYGDTHA 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYL 242 + W EDPSN +R +R + + ++ + A + L + L Sbjct: 182 LCWVEDPSNAHVAHDRNWLRHTLWPVLTQRWPDASRRVGRAAGEQAEAEALLRELAGEDL 241 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKSG--KR 299 H + + L+R + G + P +E+ + +++G ++ Sbjct: 242 ARHPPGPGLAVSVLARLSPARARNLVRHWLLMSG--LRPPPRARLEQGLADLIRAGRDRQ 299 Query: 300 GCVSIGRVVIDRRANFL 316 ++ + R + + Sbjct: 300 PVLTWPEGELRRYRDRI 316 >gi|219685944|ref|ZP_03540742.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04] gi|219672518|gb|EED29559.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04] Length = 440 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 24/270 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R + Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRSDNEQN 67 Query: 69 -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA V + ++ + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NIS+ D +N D + R RVR + K + + V Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268 + S D+ LN L+F L+ Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270 >gi|119504829|ref|ZP_01626907.1| cell cycle protein [marine gamma proteobacterium HTCC2080] gi|119459434|gb|EAW40531.1| cell cycle protein [marine gamma proteobacterium HTCC2080] Length = 426 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 25/331 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 + +SGG DS+ LL H+ L + A+ + H L A V DVC +L I Sbjct: 2 LGLSGGCDSIALLHLAHAWLDHVGPERRPALRAVHIHHGLAPEADAWVEVCHDVCQQLSI 61 Query: 83 AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 A SV + G+ AAAR ARY++ + K+ +++ AH DDQ+ETV R R Sbjct: 62 ALSVYRVTPVTDEGKGIEAAARTARYSVYRQELKS--GEVLLLAHHADDQVETVLQRLLR 119 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 KG +GM + +SRP L R I+ + R +++ D SN D RF+R Sbjct: 120 GTGPKG--FAGMPRRRELGQGV-LSRPLLGVARSVIKRWADNRELAYVIDASNQDMRFDR 176 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----- 256 +R + L L + +++ + + L+ ++ + + + Sbjct: 177 GFLRTEI----LPKLEQRWPGYRESIRRATELQSGLLRQHNAQPLALTANVMGEPAMAYH 232 Query: 257 LNIDSTLLFYLLRVSA--AICGGQISLPGYRSMERVMLF---LKSGKRGCVSIGRVVIDR 311 L + +L S + + +P + + ++ + V +GR ++ Sbjct: 233 LKDSAQDSRGVLAYSLHRWLSELLLDVPAAARLTEFVRQCYEARTDRCPEVDVGRGMLRA 292 Query: 312 RANFL----WITRAVRNLPTLILYPEETTVW 338 + + + TL+ W Sbjct: 293 WRGLICFTPYFVEEAQLSATLVAGQVYEGSW 323 >gi|222152147|ref|YP_002561307.1| hypothetical protein MCCL_1904 [Macrococcus caseolyticus JCSC5402] gi|222121276|dbj|BAH18611.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 403 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 16/223 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +I VAVSGG DSM LL RS + + V+H LR+ +++E + C+ Sbjct: 10 NIGVAVSGGVDSMVLLD-----KIRRSGCFKQLYVLHVNHQLRDVSREEQEMIQRYCTSY 64 Query: 81 RIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I V + + AR+ RY AK + + ++TAH DDQ+ET++ R Sbjct: 65 GIELIVYTIPKGTFDLSKSIQHKARKLRYDFFESVAKEKDLSWVLTAHHKDDQMETIFFR 124 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + GM ++ + +P L + ++ + + + + ED SN + + Sbjct: 125 LLSNRFT--FQPPGMQ--MIVKGAVTYGKPLLNYSKSELYQYAERERVPFMEDESNEEVK 180 Query: 199 FERVRVRRF-VRDIDLHAL----YLKMKKFQDLRVKVNNAVAM 236 + R +R + +D L L + + D + AM Sbjct: 181 YTRNYIRNEIIAKLDEAKLSKENLLHVAHYIDTAQSLVRQCAM 223 >gi|255066803|ref|ZP_05318658.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256] gi|255048878|gb|EET44342.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256] Length = 399 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 13/283 (4%) Query: 42 VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101 + R + A+ V H L A D + + + +C + V + K G+ AA Sbjct: 2 LACLREELGLNVHALHVHHGLSRNADDWLGFCTRLCQEWNVPFRSVKVEVKKDGLGIEAA 61 Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 AR+ARY S + +I AH DDQ+ET + + R K L+ M D Sbjct: 62 ARKARYQAFS----DDPSGIIALAHHQDDQIETFMLAAVRGGGIK--ALAAMPQWRKLDE 115 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 I RP L R+++ S+ N+ ED SN D F R +R + + + Sbjct: 116 ETQIWRPLLTFSRKELESYAAACNLPNIEDESNADTAFLRNWMRYEALPVWRERIPNFDR 175 Query: 222 KFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 + +A+L Y V +S+ +L Sbjct: 176 HVCANIRSLQTDLAILDEVVEADYQAVCQSGRFQVSRW-QTFSEARRSRIL--WRFFKEN 232 Query: 278 QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 +I R + L + G + +FL+I + Sbjct: 233 EIVESSPRKLADFARILLEAETAQWQFGETSVCLYRDFLFILK 275 >gi|187928104|ref|YP_001898591.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J] gi|187724994|gb|ACD26159.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J] Length = 472 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 138/391 (35%), Gaps = 21/391 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F V + + +A+SGG DS LL A + +++ A+ + H L+ A Sbjct: 30 FVVSGEIETPTVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLQADADVWE 87 Query: 71 RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +A G+ AAREARYA + A++++TAH D Sbjct: 88 CACQRMAQAAGVAFHARRVYVEIDAGQGVEEAAREARYAALEALCAQTGASILLTAHHQD 147 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV ++ R G+ M + + RP++ R +I + + W Sbjct: 148 DQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHAHALCWV 203 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 EDPSNTD R+ R +R + + H A + + + + LT Sbjct: 204 EDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQADLTRIAS 263 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGR 306 + ++ + + +LR G + + ++ + + + Sbjct: 264 ANGLDVAALIALSAPRQRAVLRAWLTKAGMRALSSRRLEDLHTQLIDARDDGALRIELPT 323 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-- 364 + R WI + P + V G F+ + ++ ++ A + Sbjct: 324 GQVRRYRGVAWIDTGAND------RPGQAAVAIGAQLFEPAHPAEQRVTVDAWGGALLFA 377 Query: 365 ---PSGIPPIIAQRALSSMPSKEGGKPLLAP 392 G+ Q L P + G + L P Sbjct: 378 PVASDGVATQTLQAPLVLSPRRGGERIALRP 408 >gi|219684916|ref|ZP_03539857.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr] gi|219671654|gb|EED28710.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr] Length = 440 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 24/270 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R + Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRSDNEQN 67 Query: 69 -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA V + ++ + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGISIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NIS+ D +N D + R RVR + K + + V Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268 + S D+ LN L+F L+ Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270 >gi|288940435|ref|YP_003442675.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180] gi|288895807|gb|ADC61643.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180] Length = 477 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 16/301 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +A SGG DS LL A + + + A+ VDH L+ + D R+ + C+ LR Sbjct: 25 IAYSGGLDSSVLLAAAAVIRARLPGEDSSGRLRAVHVDHGLQTASADWARHCAARCAALR 84 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + S+ P L A AREARYA+ L++TA DDQ ET+ + Sbjct: 85 LPLSIERPTSTPGPGESLEAWAREARYAIFRRLLAP--GDLLLTAQHRDDQAETLLLALL 142 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ + + + RP L R+ + + ++ + W +DPSN F+ Sbjct: 143 RGSGPHGLAAMPVVAPL---GAGRLVRPLLDFGRQSLADYACRQGLDWLQDPSNDHTAFD 199 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R +R V + L A + + A L+ +Y + + + L++ Sbjct: 200 RNYLRHRVLPL-LRARWPSASATLARSARHCAEAAELVDQYAERALAEVRGVQPGALSLA 258 Query: 261 ST-LLFYLLRVSA---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313 + L LR + + P R ++R++ ++ V + R Sbjct: 259 ALGRLDRPLRKAVVRHWLVQRGFRPPDTRHLDRLLDELPAARADANPVVVWEGCQVRRYR 318 Query: 314 N 314 Sbjct: 319 G 319 >gi|282901699|ref|ZP_06309615.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505] gi|281193462|gb|EFA68443.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505] Length = 335 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 106/295 (35%), Gaps = 18/295 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L P H+LVA+SGG DS+ L+ L + K K + DH RE ++ + Sbjct: 17 RHLFAPHEHLLVALSGGQDSLCLIKLLVDLQVK---WKWKLAIAHCDHRWREDSQANADH 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V ++ + + + + A AR RY + E A+ I+T HT D+ Sbjct: 74 VKNLATSWDLPFH---LQIATDPVNSEADARNWRYRVFREIAEDYGYKYIVTGHTSSDRA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R G L + + RP L RE F ++ D Sbjct: 131 ETLIYNLIRGTGADG--LQSLNWERSLGEKTMLVRPLLEITREQTGKFCQDLDLPVWVDS 188 Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +N + ++ R R+R+ + L + + + L + LT Sbjct: 189 TNQNLQYPRNRIRQQLLPYLAANFNPQVESHLSHTAELLRAEVEYLEQIAHQLRLQALTK 248 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + +++ +L L + + P + +E++ + + R Sbjct: 249 CENGDLRLNRHLLKQQPLALQRRVIRQI-LHEALPQTPNFDHIEKITDLINAPNR 302 >gi|254421293|ref|ZP_05035011.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335] gi|196188782|gb|EDX83746.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335] Length = 232 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L +HIL+AVSGG DS+ L L + S I DH R + + +V Sbjct: 26 RLLPKDSHILIAVSGGQDSLCLARLLSDLSSK---WYWSLGWIHCDHGWRTDSTENAAHV 82 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +I V + +K AAAR RY + A+ + ++T HT D+ E Sbjct: 83 VKLAEAWQIP---VRIELAKGLAKTEAAARGWRYEVFERVAREQGYSHVVTGHTKSDRAE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYD--------------LNLWISRPFLRCRREDIRS 179 TV R G+G + + + RP L R + Sbjct: 140 TVLYNLIRGAGTDGLGTLRWTRPLSLAACLAQGDNLDIKQSQAITLVRPLLDFTRAETAH 199 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 F ++I D SN D F R R+R + Sbjct: 200 FCQDQHIPVWIDSSNQDLNFRRNRIRLELMP 230 >gi|323126272|gb|ADX23569.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 428 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 20/250 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVSGG DSM LL LH D +I ++H R ++ E Y+ + Sbjct: 20 HRRVLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + ++ AAR+ RY + + + ++TAH DDQ ET+ MR Sbjct: 77 NHSVPIYISHFEGIFS----EKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL + D+ NI ED SN + Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLSFSKGDLP------NIFHFEDTSNEETT 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R RVR L L + + ++ +L + + + I + Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLSQLAIENQLLFQAFTELTTKITITHLAEFRA 239 Query: 259 IDSTLLFYLL 268 +++ ++LL Sbjct: 240 QTASVQYFLL 249 >gi|291287206|ref|YP_003504022.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290884366|gb|ADD68066.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 417 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 18/258 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LVA SGG DS+ LL L + SA ++H R+T+ + ++ +D C Sbjct: 18 GRRLLVAFSGGKDSVALLHFLKR---NEGIQGYSVSACHINHLFRKTSLWDEKFCADFCE 74 Query: 79 RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L I + + AR RY + K +A L++TAHT +D +ET Sbjct: 75 KLSIPFISYRADVPRYCEVKKMSFEHGARIVRYRALYNAMKHFDAELLLTAHTKNDVVET 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ A +G + + D + + RP L E+I ++ + I D +N Sbjct: 135 FFIH-----AVQGASVFSLKGITERDRD--LFRPMLDISTEEILEYINRYKIKHAVDETN 187 Query: 195 TDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKV--NNAVAMLIPKYLTVHMRSIIA 251 DD + R +R + + + + + V ++ + + + V S++A Sbjct: 188 NDDSYLRNFIRNHITATLSEYRPGFENNILGIMHDAVKYDSYLEERLKPLINVSDGSVLA 247 Query: 252 ISQDILN-IDSTLLFYLL 268 + + + + + YLL Sbjct: 248 VERQVFDSLHEVEQDYLL 265 >gi|301344692|ref|ZP_07225433.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB056] gi|301510194|ref|ZP_07235431.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB058] gi|301595522|ref|ZP_07240530.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB059] gi|332856879|ref|ZP_08436288.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150] gi|332867219|ref|ZP_08437484.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113] gi|332726933|gb|EGJ58438.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150] gi|332734158|gb|EGJ65290.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113] Length = 427 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 19/292 (6%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90 DSM LL + + + AI +DH L++ + + V+ + L I + + + Sbjct: 2 DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55 Query: 91 NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150 + L A AR+ARY +H + +++ AH DQ ETV +R G+ Sbjct: 56 IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111 Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 D Y ++ I RPFL RE I + Q + + +DP N D+ ++RV R + Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWP 168 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR- 269 L + + KM++ + + ++ + L + + L S L F R Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQ 227 Query: 270 -VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 +SA + G P + +ER+ ++ KS + + + R N L+ Sbjct: 228 LLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQFYYVRYQNILY 279 >gi|282895983|ref|ZP_06304014.1| PP-loop protein [Raphidiopsis brookii D9] gi|281199093|gb|EFA73963.1| PP-loop protein [Raphidiopsis brookii D9] Length = 335 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 107/296 (36%), Gaps = 20/296 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L P H+LVA+SGG DS+ L+ L + K K + DH RE ++ + Sbjct: 17 RHLFAPHEHLLVALSGGQDSLCLIKLLVDLQVK---WKWKLAIAHCDHRWREDSQANADH 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V ++ + + + + AR RY + E A+ I+T HT D+ Sbjct: 74 VKNLATSWDLPFH---LQIAIDPVNSEGDARNWRYRVFREIAEDYGYKYIVTGHTSSDRA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R G L + + RP L RE F ++ D Sbjct: 131 ETLIYNLIRGTGADG--LQSLTWQRSLGEKTMLVRPLLEITREQTGKFCQDLDLPVWVDS 188 Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +N + ++ R R+R+ + L + + + L + T Sbjct: 189 TNQNLQYPRNRIRQQLLPYLAANFNPQVESHLSHTAELLRAEVEYLEQIAHQLRLQASTK 248 Query: 245 HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + +++D+L + ++R Q P + +E++ + + R Sbjct: 249 CEDGDLRLNRDLLKQQPLAIQRRVIRQILQEALPQT--PNFDHIEKIRDLINAPNR 302 >gi|251781481|ref|YP_002995782.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390109|dbj|BAH80568.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 428 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 20/250 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+AVSGG DSM LL LH D +I ++H R ++ E Y+ + Sbjct: 20 HRRVLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + ++ AAR+ RY + + + ++TAH DDQ ETV MR Sbjct: 77 NHSVPIYISHFEGIFS----EKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETVLMR 132 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LSG+ + N + RPFL + D+ NI ED SN + Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLSFSKGDLP------NIFHFEDTSNEETT 183 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R RVR L L + + ++ +L + + + I + Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLSQLAIENQLLFQAFTELTTKITITHLAEFRA 239 Query: 259 IDSTLLFYLL 268 +++ ++LL Sbjct: 240 QTASVQYFLL 249 >gi|330959215|gb|EGH59475.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 445 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 113/309 (36%), Gaps = 20/309 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS LL L + + + A+ V H L+ A + VC L +A Sbjct: 30 IGFSGGLDSTVLLHLLADLSRRETLPALN--AVHVHHGLQAAADAWPEHCRQVCQALGVA 87 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + +P + AAR+ARYA ++ + +++T DDQ ET+ R R Sbjct: 88 FERVRVQV-EPGASIEQAARQARYAAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+GM + + RP L R ++ + LQR ++W EDPSN D +F R Sbjct: 145 GVRG--LAGMPVQRILGRG-HLVRPLLAVSRTELEDYALQRGLTWVEDPSNDDQQFSRNF 201 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R V + V + A +L + L + Sbjct: 202 LRGQVLPLLTSRWPQASASLARTAVHLGEAQQLLDELAAQDIANAQAITPYAWLGLPVLS 261 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L L+ +S A + + R+ + + + R Sbjct: 262 LEPLVGLSVARQRNALRY-WLAPLTRLPDTDHWVGWETLRDAAPDALPLWRLTEGALYRA 320 Query: 313 ANFLWITRA 321 + LW A Sbjct: 321 QSLLWWLPA 329 >gi|162448219|ref|YP_001621351.1| PP-loop superfamily ATPase [Acholeplasma laidlawii PG-8A] gi|161986326|gb|ABX81975.1| ATPase of the PP-loop superfamily [Acholeplasma laidlawii PG-8A] Length = 406 Score = 183 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 28/280 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM L + F + +H R + + V +C+ I Sbjct: 14 VLAVSGGVDSMVLFDLFVK-------HNLNFVVVHFNHQKRAESILDHELVESMCTLHHI 66 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + K +R ARY + A+ + I+TAH DD ET+ M+ R Sbjct: 67 PYHYIKLKIKN--GNFQEVSRNARYKNLEFIAEQYHTPYIVTAHHLDDLAETIMMKLIRG 124 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G + M + D +++ +P L +E+I + I + ED +N +D + R Sbjct: 125 SNL--LGYAAMQEVTHIDKFIYL-KPLLNYSKEEISLYQQTHQIKFYEDHTNLEDTYSRN 181 Query: 203 RVRRFVRDI--DLHALYLKMKKFQD----LRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 RVR + + + + + +K F + + K L+ H+ S A+ + Sbjct: 182 RVRHHLIPLLKEENDVLTHLKNFSKQSYLAASYIRKESNNFLSKDLSFHLSSFDALHDAV 241 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 +L+F L++ ++ +E ++ LKS Sbjct: 242 KMDVISLIFESLKIDK----------TFKKIETILAQLKS 271 >gi|107028745|ref|YP_625840.1| tRNA(Ile)-lysidine synthetase-like [Burkholderia cenocepacia AU 1054] gi|116690096|ref|YP_835719.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424] gi|105897909|gb|ABF80867.1| tRNA(Ile)-lysidine synthetase-like protein [Burkholderia cenocepacia AU 1054] gi|116648185|gb|ABK08826.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424] Length = 473 Score = 183 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 27/396 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ +++ RP LR R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237 ++W +D SN D R+ R +R V L AL + F+D + L Sbjct: 188 ALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 238 IPKYLTVHMRSII-AISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 V R A+S+D L D T LLR G S +M R + Sbjct: 244 AELDFAVAARDDGHALSRDALAGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T PE WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGQEVWHLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384 + + + VP + A + + Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399 >gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii] gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii] Length = 1167 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 133/306 (43%), Gaps = 22/306 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + +AVSGG+DSM L + +S ++VDH R + +EV V + Sbjct: 47 DRVAIAVSGGADSMALCLLALEWTESKSL----VFGLTVDHGFRRESAEEVVQVREWLRT 102 Query: 80 LRIAHSVV--SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + ++ SW+ P G L +AR+ARY L+ E + A +++TAH DDQ E Sbjct: 103 LGMECEILKCSWQGGFPSPGHLQESARKARYELLQEACQRNGAGVLLTAHHADDQAELFA 162 Query: 137 MRSQRDYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +R R + G+ L + +I+ L + RP L +++D+ + + SW Sbjct: 163 LRLSRCSGDNGLACMALASELFPIMPSIIEASRLLLVRPLLDLQKKDLYNVCHVADQSWI 222 Query: 190 EDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 EDP+N + R ++R+ + + + + ++ R +++ ML+ ++ + + Sbjct: 223 EDPTNCKTIYARNKIRKELVSLSDSMRSEVQDLIATYRKKRSEIHVQTKMLMTTFVHIDL 282 Query: 247 R-SIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGC 301 + + L D+T+L LL + ++ ++ K G G Sbjct: 283 DYGYAVVDAEGLLAETNDTTVLETLLASVLRFVSQRPKPAKGTAVRGARAWITKRGTEGR 342 Query: 302 VSIGRV 307 +++ Sbjct: 343 LTVAGC 348 >gi|303326966|ref|ZP_07357408.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3] gi|302862954|gb|EFL85886.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3] Length = 366 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 126/334 (37%), Gaps = 22/334 (6%) Query: 6 IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + RF++R L P A +++A+SGG+DS L LH + K+ A++V+H LR Sbjct: 19 LAVERFYLRRLEIPRGARLVLALSGGADSTALACILHILSPRL---KLDLFALTVNHGLR 75 Query: 64 ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 A + R D+C+ L I H+ V+ S GL A R ARYAL+ E + A Sbjct: 76 PEADADARCARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQA 135 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ H +D E V +R R +G D + RP L R + +R Sbjct: 136 DFVVLGHHNEDLSEDVLLRLTRGTGWPALG-----GMAARDDTRRLLRPLLFTRPQALRE 190 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 L Q I W ED SN F R R+R V L L + + Sbjct: 191 LLRQCGIVWREDASNDSPAFTRNRLRHNV----LPLLRAENPSLDRSMAALWQLAQWDAD 246 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + ++ A D L R L Y + R++L +G Sbjct: 247 YWEKTLSEALAAHPWQEEEHDGRPCLILPRALLTALHPAARLRLYLKVVRLLLGRANGDS 306 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 G + R ++D A R R L Sbjct: 307 GGQARSRTLLDLDAAL----REGRGNTRFQLPGG 336 >gi|160943996|ref|ZP_02091226.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii M21/2] gi|158444672|gb|EDP21676.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii M21/2] Length = 478 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 32/331 (9%) Query: 1 MFLSPIESVRFFV--RSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 M + + V F L+ P H+ AVSGG+DSM L + + SA Sbjct: 1 MDTAILARVEDFCIREGLLQPGASQHLAAAVSGGADSMA---LLLLLRQLQPRFGYTLSA 57 Query: 56 ISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISE 112 V+H LR + D + +V C+RL + V S P AR RY ++ Sbjct: 58 CHVNHGLRGQSADRDEAFVRAECARLGVPLRVFHAAELASPPAHAGEDWARRLRYTAFAQ 117 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + I TAHT +DQ ET+ +R R G G + RP L Sbjct: 118 L-QGQGIDAIATAHTANDQAETLLLRLARGTGLHGAG-------GIRPRRGCYLRPLLCL 169 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R + + W D +N D + R R+R L AL + Sbjct: 170 SRAETEAVCRAAGQPWVTDETNDTDAYARNRLRHN----ALPALESTNAAAVQNLARFCE 225 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 A + R + A + + L + AA L ++ ++ Sbjct: 226 KAARADVYFAAEAARLLAAARL----PGAETAWQLAPLQAA-----DPLLLETALHSLVA 276 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323 ++ + V + V+ + + + +T VR Sbjct: 277 PVRDAEEKYVQLLCAVVRQGSGAVQLTGQVR 307 >gi|184156933|ref|YP_001845272.1| ATPase [Acinetobacter baumannii ACICU] gi|332873990|ref|ZP_08441925.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059] gi|183208527|gb|ACC55925.1| predicted ATPase of the PP-loop superfamily [Acinetobacter baumannii ACICU] gi|332737731|gb|EGJ68623.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059] Length = 427 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 19/292 (6%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90 DSM LL + + + AI +DH L++ + + V+ + L I + + + Sbjct: 2 DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55 Query: 91 NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150 + L A AR+ARY +H + +++ AH DQ ETV +R G+ Sbjct: 56 IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111 Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 D Y ++ I RPFL RE I + Q + + +DP N D ++RV R + Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP 168 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR- 269 L + + KM++ + + ++ + L + + L S L F R Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEVLEEVLKDDWQYSGSADYLDLTKLSELSFARQRQ 227 Query: 270 -VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 +SA + G P + +ER+ ++ KS + + + R N L+ Sbjct: 228 LLSAWMKGQGQYRPAFEMVERLRTEVIESKSDAQAALHWNQFYYVRYQNILY 279 >gi|325278075|ref|ZP_08143594.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51] gi|324096782|gb|EGB95109.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51] Length = 247 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 8/216 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L RS A+ V H L+ A + VC+ L IA Sbjct: 15 IAFSGGLDSTVLLHLLADYA--RSHAVPPLRAVHVHHGLQAAADAWPAHCQAVCANLGIA 72 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + S P L AAR+ARYA + ++ T DDQ ET+ + Sbjct: 73 LEVIHVQVS-PGASLEQAARDARYAAFQQTL--GPGDILFTGQHCDDQAETL--LLRLLR 127 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 GL+ M + RP L C R+ ++++ R ++W +DPSN D RF R Sbjct: 128 GAGLRGLAAMPGQRPLGQGS-LVRPLLGCARQLLQAYAQARGLAWIDDPSNADTRFARNF 186 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +RR V + F + A+ +L Sbjct: 187 LRRKVMPQLQQRWPQVSQNFARAAEHLGEALGLLDE 222 >gi|206560511|ref|YP_002231275.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315] gi|198036552|emb|CAR52449.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315] Length = 473 Score = 183 bits (465), Expect = 4e-44, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 134/378 (35%), Gaps = 27/378 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RYA + + + Sbjct: 69 ADAWVAHAEAEAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDAMGERHGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ +++ RP LR R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK-------VNNAVAML 237 ++W +D SN D R+ R +R V L AL + F+D + + L Sbjct: 188 ALTWIDDESNGDTRYARNALRLDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 238 IPKYLTVHMRSII-AISQDIL-NIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 V R A+S+D L D T LLR G S +M R + Sbjct: 244 AELDFAVAARDDGRALSRDALVGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T +PE WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPHPEAALAWDGQEVWHLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPS 366 + + + VP Sbjct: 364 GTFVFAPADAGSADAVPE 381 >gi|218509292|ref|ZP_03507170.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli Brasil 5] Length = 312 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 10/256 (3%) Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R SG+ D +L+D WI RP L R DIRSFL +R ++W +DPSN D Sbjct: 1 MRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRERRVAWIDDPSNED 56 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 ++ERVRVRR + A ++ R+ +++A A + ++ + + + D Sbjct: 57 VKYERVRVRRQLS--ADPATETDIRAAWKERLALSSAAAEWLDRHFRLQGGLLGQVLPDG 114 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L D +L Y L A+ GGQ PG MER++LF + +++GRVV D R + L Sbjct: 115 LRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMTVGRVVFDLRRDGL 174 Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP----SGIPPII 372 ++ R R + L L P E VWDGR++ N S + I+I Q R + +P PP + Sbjct: 175 YLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSPIPVLVTGIQPPRV 234 Query: 373 AQRALSSMPSKEGGKP 388 S++P + + Sbjct: 235 GAVNDSTVPDESAARK 250 >gi|309781266|ref|ZP_07676003.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp. 5_7_47FAA] gi|308920087|gb|EFP65747.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp. 5_7_47FAA] Length = 472 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 139/391 (35%), Gaps = 21/391 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F V P + +A+SGG DS LL A + +++ A+ + H L A Sbjct: 30 FVVSGDAEPPTVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLHADADVWE 87 Query: 71 RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + G+ AAREARYA + A++++TAH D Sbjct: 88 CACRRMAQAVGVTFHARRVNVAVDAGRGVEEAAREARYAALEALCTETGASILLTAHHQD 147 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV ++ R G+ M + + RP++ R +I + + W Sbjct: 148 DQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHAHALCWV 203 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 EDPSNTD R+ R +R + + H A + + + + L+ Sbjct: 204 EDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQADLSQVAS 263 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGR 306 + + + + +LR A G + + ++ + + + Sbjct: 264 ANELNVAALSALSAPRQRAVLRAWLAKAGMRALSSRRLEDLHTQLVDARDDGALRIELPT 323 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-- 364 + R WI + P + V G F+ + ++ ++ A + Sbjct: 324 GQVRRYRGIAWIDTGTND------RPGQAAVAIGAQLFEPAHPAEQRVAVDAWGGALLFA 377 Query: 365 ---PSGIPPIIAQRALSSMPSKEGGKPLLAP 392 G+ Q L P + G + +L P Sbjct: 378 PVASDGVATQTLQAPLVLSPRRGGERIVLRP 408 >gi|291518254|emb|CBK73475.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Butyrivibrio fibrisolvens 16/4] Length = 415 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 60/283 (21%), Positives = 105/283 (37%), Gaps = 32/283 (11%) Query: 42 VLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQT 96 +L R + A+ V+HC+R E A ++ YV +C ++ VV + Sbjct: 6 LLGLREEYNLDIHALHVNHCIRGEDADEDQAYVESICRDYQVPLKVVRVDIPALVKETGR 65 Query: 97 GLMAAAREARYALISEHAKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150 AR ARY +A + + I AH DD ETV R G GL Sbjct: 66 SEEEEARMARYEAFEAYADELSKESQADNVKIAIAHNADDNAETVIFHMAR-----GTGL 120 Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 GMC I RP L + +I F+ + IS+C D +N+ ++R R+R + Sbjct: 121 DGMCGIAP--TRGRIIRPLLEVPKAEIMEFIQENEISYCVDETNSMVCYDRNRIRHNILP 178 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 ++ D+ ++ + Y+++ ++ IS++ N F Sbjct: 179 ELSEINSKALEHIADMCNRLTE-----VADYISIEAHGLLEISREDGNKLRKRAFVTAPK 233 Query: 271 SAAICGGQISLPGYRS---------MERVMLFLKSGKRGCVSI 304 A + L + +E ++ L+ V + Sbjct: 234 VIASQALKEYLSSFMPNQKDVSAVHIESILGLLQEDGERQVQL 276 >gi|257066129|ref|YP_003152385.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548] gi|256798009|gb|ACV28664.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548] Length = 456 Score = 183 bits (465), Expect = 5e-44, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 25/285 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ I VR +R+ + I+V SGG DS L+ AL + + F ++ Sbjct: 1 MTIINKVRETIRANGLIEEGDTIIVGASGGPDSQFLIYALMELRKEMDF---TIILAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115 H R+ A + V + + ++ + K A R RY E K Sbjct: 58 HLHRKEANFDESLVEETAEKFALSFRKKAASMDAYAKKYGISSEDAGRRLRYEFFREIQK 117 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I AH DDQ ETV MR R +G+ + N I RP L ++ Sbjct: 118 EYPKSKIAIAHNLDDQAETVLMRIIRGTGVEGL-------RAMDYRNGDIIRPILDIKKA 170 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228 I +L I + D +N + R ++R + +L + D Sbjct: 171 MILDYLNSEQIPYAIDKTNFTTDYTRNKLRLDIIPKIEKINPNFKESLVKLSEIATDEIS 230 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSA 272 ++ + + + ++ ++ D + L+R + Sbjct: 231 ISDSYIKNIYEDIIIQRKIDFVSFDKEAFESQDKAIQSRLIRCAI 275 >gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter xylanophilus DSM 9941] gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter xylanophilus DSM 9941] Length = 444 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 124/323 (38%), Gaps = 25/323 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64 +E+VR + L P + VSGG DS+ LL AL + + + + VDH LR E Sbjct: 11 LETVRRYGMDLSRPLAL---VSGGPDSVALLRALVGLGYEPA-------VLHVDHGLRGE 60 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ + +V ++C L + V S + + + GL AR RY + E A + A+ + Sbjct: 61 ESRGDAEFVRELCRGLGLRCEVRSLRL-EGRAGLQERARRERYRIAGEVAGRLGASAVAV 119 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ET+ + R +G+ + + + + RP + R +I +L Sbjct: 120 GHNADDVAETLLLNLARGSGLRGL-------SGIPPVRGRVCRPLIERTRAEILGYLEAL 172 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKY 241 + D +N ++ R RVR V + ++ + A+ L Sbjct: 173 GQGYRVDSTNLLPKYARNRVRLEVMPVLEELHPGAVRNMARAAALLREDLAALEELAAGV 232 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + ++ + L Y +R + A + R +E V+ + G Sbjct: 233 VREEGGEAGMSVAELDGLPPALRRYAVRRAYAAVAPEAPPLPRRLVEAVLELARGGGGTR 292 Query: 302 ---VSIGRVVIDRRANFLWITRA 321 + G V R L + R Sbjct: 293 LLDLPGGVVAAARFGERLVLYRR 315 >gi|241662709|ref|YP_002981069.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D] gi|240864736|gb|ACS62397.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D] Length = 472 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 22/397 (5%) Query: 6 IESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 + + FV S I+ +A+SGG DS LL A + +++ A+ + H L Sbjct: 24 VAACAAFVASSGAETPIVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLHA 81 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 A + + + + G+ AAREARYA + A++++ Sbjct: 82 DADVWECACRRMAQAVGVTFHARRVNVAVDGGRGVEEAAREARYAALEALCTETGASILL 141 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQ ETV ++ R G+ M + + RP++ R +I + Sbjct: 142 TAHHQDDQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHA 197 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + W EDPSNTD R+ R +R + + H A + + + + Sbjct: 198 HALCWVEDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQAD 257 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRG 300 L+ + + + + +LR A G + + ++ + Sbjct: 258 LSQVASANELNVAALSALSAPRQRAVLRAWLAKAGMRALSSRRLEDLHTQLVDARDDGAL 317 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 + + + R WI + P + V G F+ + ++ ++ Sbjct: 318 RIELPTGQVRRYRGIAWIDTGTND------RPGQAAVAIGAQLFEPAHPAEQRVAVDAWG 371 Query: 361 KADV-----PSGIPPIIAQRALSSMPSKEGGKPLLAP 392 A + G+ Q L P + G + +L P Sbjct: 372 GALLFAPVASDGVATQTLQAQLVLSPRRGGERIVLRP 408 >gi|257470195|ref|ZP_05634286.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] gi|317064411|ref|ZP_07928896.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] gi|313690087|gb|EFS26922.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185] Length = 444 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 29/318 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 I+V SGG DS+ L+ L + + +F + ++H LR E + + ++ + Sbjct: 19 KNDKIVVGFSGGPDSVFLVEMLMKLRENINF---DMVLVHINHLLRGENSDGDEKFSIEY 75 Query: 77 CSR--LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + L++ ++ GL A R+ARY L E + I A I AH DDQL Sbjct: 76 GKKKGLQVFSRKINITALGKDMGLTLEEAGRKARYDLFKEVFEKIGANKIALAHNKDDQL 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET R R +G+ + I+ +++I RP ++DI +L + +I + D Sbjct: 136 ETFMFRLTRGAGLEGL------EGIVAKRDVYI-RPISEIYKKDIVEYLNKNSIPYRIDE 188 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNNAVAMLIPKYLTVHMRS 248 +N ++ F R +R + K K + +VN + + + +Y+ + S Sbjct: 189 TNFENEFTRNSIRLDLIPFIEKRYNPKFKDKLYSLIEEIREVNKVLEIRLEEYVVNNKLS 248 Query: 249 IIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GR 306 I + + + S +L YL + + ++ + L G +S+ G Sbjct: 249 IEKLKKLDKYLLSKVLIQYLYSYGIEV--------SRKKIQLIEDILDKGGSKDISLNGE 300 Query: 307 VVIDRRANFLWITRAVRN 324 V+ + +FL I + + Sbjct: 301 FVLKKEYDFLAIEKNTKK 318 >gi|33862341|ref|NP_893901.1| hypothetical protein PMT0068 [Prochlorococcus marinus str. MIT 9313] gi|61216599|sp|Q7V987|TILS_PROMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33640454|emb|CAE20243.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313] Length = 343 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 74/302 (24%), Positives = 117/302 (38%), Gaps = 28/302 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +L+AVSGG DSM LL L + + DH + + + + Sbjct: 29 LPAKASLLIAVSGGQDSMALLGLLIDLQRKHGW---SLEVWHGDHNWHKQSATIATELKN 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-------INATLIMTAHTF 128 C ++ S + QT A AR RY ++ HA+ ++T HT Sbjct: 86 WCESHNLSFC--SDQAKPGQTNNEATARHWRYEQLTLHAERLSSNNPNHPCRYVLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRN 185 D+ ET+ + R G+ C I D N+ + RP L RED + Sbjct: 144 SDRAETLLLNLARGTDLAGLSSMRQCRPISKDHPHKNVQLIRPLLGFSREDTALICSELG 203 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN------NAVAMLIP 239 + DP+N++ F R RVR+ V + + L ++N A+AML Sbjct: 204 LPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRMAALAERLNHHHADQQAIAMLAL 263 Query: 240 KYLTVHMR-SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 L+ ++Q + +TLL Y L+ G SLP +E++ + GK Sbjct: 264 NNLSKQNGLCRKDLAQLPITARTTLLAYWLKR-----SGAPSLPA-VQLEQISQSIAPGK 317 Query: 299 RG 300 Sbjct: 318 PP 319 >gi|51599039|ref|YP_073227.1| hypothetical protein BG0813 [Borrelia garinii PBi] gi|61216476|sp|Q65ZY6|TILS_BORGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|51573610|gb|AAU07635.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 440 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 24/270 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRTDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA V + ++ + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNKNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NIS+ D +N D + R RVR + K + + V Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268 + S D+ LN L+F L+ Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270 >gi|328948674|ref|YP_004366011.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489] gi|328448998|gb|AEB14714.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489] Length = 454 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 122/325 (37%), Gaps = 38/325 (11%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81 VAVSGG+DS+ LL+AL + I+ A++V+H +R + + D+ YV VC L Sbjct: 34 VAVSGGADSVSLLVAL------KKNLNIQLKAVTVNHNIRSSKESSDDADYVESVCRSLG 87 Query: 82 IAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + K +T + AAR+ RY S+ KT + + AH +DQ+ET Sbjct: 88 VKCVRYDVAPGEIFSLAKKLKTSVEDAARKIRYEKFSDFIKTEGISFVCLAHNKNDQIET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + MR + L G+ T RP L R +I +L + I++ D +N Sbjct: 148 LAMRFLQGS----ANLCGIPMTREK-----FVRPLLNISRSEIEKYLQLQKINFRTDRTN 198 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D++ R R+R + + L + +Q+ + ++ I Sbjct: 199 FDNQIFRNRIRNKL----VPFLDNEFSGWQNAVFSLAEKSRAENEALSFFTENELLKIDC 254 Query: 255 DI----LNIDSTLLFYL---LRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSI 304 + D+ L ++V G R + L SG GC Sbjct: 255 KFENEKFSFDAEKFSSLPLAIKVRIIFKGIDFVKASERIPYAFVSCLASGCFENAGCSEC 314 Query: 305 GRVVIDRRANFLWITRAVRNLPTLI 329 G + I + + + Sbjct: 315 GGLEFSFCNGRFLIQKKRKVATESV 339 >gi|296875509|ref|ZP_06899581.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 15912] gi|296433433|gb|EFH19208.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC 15912] Length = 424 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 100/298 (33%), Gaps = 26/298 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL E F +LVA+SGG DSM L L+ ++ KI V+H Sbjct: 5 FLEFCEKQDLFT----PHRRVLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + R V + A AR RY + + + T Sbjct: 58 QRPESDLEESELRTLADRRETRIHVAHYSGDFT----EAKARTFRYDFFKQIMEKEDCTA 113 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H +DQ ET +MR R + LSG+ + + RP L ++++ Sbjct: 114 LVTGHHANDQAETTFMRLIRGTKLR--HLSGIPVRQPFGKG-ELIRPLLTFTKDELME-- 168 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I ED SN + R RVR L + + Q + V Sbjct: 169 ----IPHFEDSSNDSQDYFRNRVRHQ----YLPEFEKENPQMQVSLRYLAEEVTHWHQAL 220 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + I ++ +LL A G + ++ L+ + Sbjct: 221 KELTSELTIQDLSSFRTYSHSVQSFLLEEYLAQF--PDLQLGRVQFQELLDLLRKKRN 276 >gi|154483317|ref|ZP_02025765.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC 27560] gi|149735827|gb|EDM51713.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC 27560] Length = 502 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 114/320 (35%), Gaps = 66/320 (20%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74 L Y +++ VSGG+DS+ +L L + S+ + + + ++H +R A+ + YV Sbjct: 15 LQYGDSVILGVSGGADSICMLYLLKDISSEMN---LTLYVVHINHHIRGKQAQHDADYVK 71 Query: 75 DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT-------------- 116 DVC +L + + + A R+ARY E A Sbjct: 72 DVCRKLNVDFKQIDADVPLMVKQTGMTEEEAGRQARYKAFFERAIEVKIKEKKQAKNQTK 131 Query: 117 ----------------------------------INATLIMTAHTFDDQLETVYMRSQRD 142 N I AH +D ETV R Sbjct: 132 KPDESRKLSLKENKENSAKEDGIKKNDPKERKNSYNNIKIAVAHNLNDNSETVLFNLFRG 191 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG+ T + I RP L C R++I +L +NIS+C D +N + + R Sbjct: 192 TGIKGL-------TGIPVRRDMIVRPLLCCTRQEIEHYLKSKNISYCSDATNKETEYSRN 244 Query: 203 RVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA--ISQDILNI 259 ++R + + + K + + +N L + + R + + + N+ Sbjct: 245 KIRLELLPYIKNNINKKAEYNIVNAAENLNEIWDYLNRQAAEEYNRYVKDEVLDEKAFNL 304 Query: 260 DSTLLFYLLRVSAAICGGQI 279 +L ++R G++ Sbjct: 305 HPAVLNQVVRKMIENGAGKL 324 >gi|306828586|ref|ZP_07461780.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249] gi|304429194|gb|EFM32280.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249] Length = 425 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 24/237 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +F + + +L+A+SGG DSM L L + + I+ V+H Sbjct: 6 FLNHFLQKEYFKKH----SKVLLALSGGLDSMFLFQLLSTYQKELG---IELILAHVNHK 58 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + E + + + + S+ ARE RY + K AT Sbjct: 59 QRSESDWEENELRKLADAAELPIYITSFSGDFS----EVRAREFRYDFFRKIMKEAGATA 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAH DDQ+ET+ MR R + L+G+ ++ + D + + RP L + D Sbjct: 115 LVTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIELIRPLLPFHKTDFPP-- 169 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 I ED +N ++ + R R+R L L + + + + + ++ Sbjct: 170 ----IFHFEDQTNRENSYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQ 218 >gi|213585404|ref|ZP_03367230.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 168 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 7/175 (4%) Query: 29 GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88 G DS LL L + AI + H L A VR+ VC R ++ V Sbjct: 1 GLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVER 58 Query: 89 WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 + G+ A AREARY ++ + ++ TA DDQ ET + +R G+ Sbjct: 59 VTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGL 116 Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G + RP LR R+ + + ++ + W ED SN DD ++R Sbjct: 117 SAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNF 168 >gi|329119473|ref|ZP_08248158.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200] gi|327464406|gb|EGF10706.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200] Length = 441 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 137/404 (33%), Gaps = 30/404 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M P +R + I A+SGG DS+ LL L + + + SA+ V H Sbjct: 1 MHPVPAAVLRALPDPVRRARRIEAALSGGLDSVVLLHTLAQLQDSLNA---ELSAVHVHH 57 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L A + + D C L I V G+ AAAR+ARY + +A Sbjct: 58 GLHAQADCWLDFCRDYCEHLGIPLRVEKVTVRPAGQGIEAAARQARYQAFA----RSSAD 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH DDQ ET ++ + R + + + + + I RP L R ++ ++ Sbjct: 114 ILAAAHHADDQTETFFLAALRGGGLRALAAMPELRPLAENPAVHIWRPLLPHTRAELAAY 173 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP- 239 + + + DP+N D + R R+R + + + +A+L Sbjct: 174 AAEHRLDYITDPANADPAYLRNRLRHDGLPRLRRIQPQLDAHIRAAVALLQDELAVLQET 233 Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLK 295 + TVH + D + R GG + + RV+ + Sbjct: 234 VDADWQTVHDAHGFN-TVDWRQLTPARRRQTARRLLLELGGSLKNQAFLTDFCRVLDQIG 292 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355 + + R +I + + + T W Sbjct: 293 TSEAQWPLGARTLIASQNRLYCLPNDWQRQYTPADQTGSLKDW----------------Q 336 Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 ++ P G+PP R L P+ + G L P R K Sbjct: 337 AAGWQLRPAPHGLPPATLARPLRIRPAAK-GDLLATPVGRKPPK 379 >gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1] gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1] Length = 476 Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 22/316 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +++ VSGG+DS+ LL LH +H LR A+ E +V Sbjct: 19 PESPLVLGVSGGADSLCLLDVLHR-------AGFNLIVAHFNHRLRPEAESEADWVCAQA 71 Query: 78 SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + V + + AAREARY+ + A + A + AHT DQ+E Sbjct: 72 QQRGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAVAHTASDQVE 131 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 TV M R KG+ G+ + + RP L RE++ ++ +R ++W EDP Sbjct: 132 TVLMHLIRGTGHKGLTGMPYRGFLNQFSTTTPLVRPMLSIWREEVLAYCHERGLTWLEDP 191 Query: 193 SNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 SN D RF R R+R V + A++ + NA + + Sbjct: 192 SNRDVRFTRNRLRNEVLPLLKQVNPRVEEAIWRLSTLLAEEDDVFENAFQQAWNQCVLEQ 251 Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC--V 302 I +S++ + + L +LR S ++ + + ++ R M F++ + Sbjct: 252 SSKQIVLSRERVQSLSPALQREVLRWSLSLLRPALRDLDFDTVNRAMQFVQQPTQSRHIH 311 Query: 303 SIGRVVIDRRANFLWI 318 + + + L + Sbjct: 312 LVAGLGLRLEGEHLIV 327 >gi|171058356|ref|YP_001790705.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6] gi|170775801|gb|ACB33940.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6] Length = 457 Score = 183 bits (464), Expect = 7e-44, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 121/331 (36%), Gaps = 28/331 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I VA SGG DS LL A + + R + A+ V H L A D + + Sbjct: 9 LGGKTRIAVAYSGGRDSSALLHATVACAAAR----VDVHALHVQHGLSAFAPDWLAHCER 64 Query: 76 VCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C L + H+ + A AR RY ++ A+ ++ AH D Sbjct: 65 RCRALSLQGARLWLHTRSLALQPARGESIEALARRERYRALASMAREAGCDTVLLAHHRD 124 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+ET +++ R G+ +I + L +RP+L R I+S++ + + Sbjct: 125 DQVETFLLQALRGAGAAGLSAM---PSIAWREGLTWARPWLDRPRSAIQSYVDAHALEFV 181 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ED SN R R R+R V AL ++ QD + + + Sbjct: 182 EDDSNASPRHARNRLRLTVMPALRQAFGDADVALTAAVQHAQDAQACMQALAEADLQAVS 241 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 +I +L + + + LLR GQ P + R+ L G Sbjct: 242 RADGLAI----DPMLALGAPRVRNLLRHWLRQSAGQ--PPAATLLRRLADELPHAPDGAW 295 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 V+ L R V LP ++ P+ Sbjct: 296 RHAAGVVAAYRGRLSWRRDV--LPPIVADPD 324 >gi|17228427|ref|NP_484975.1| hypothetical protein all0932 [Nostoc sp. PCC 7120] gi|61216693|sp|Q8YYB8|TILS_ANASP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|17130278|dbj|BAB72889.1| all0932 [Nostoc sp. PCC 7120] Length = 342 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 102/281 (36%), Gaps = 9/281 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +LVAVSGG DS+ + +L + + DH R ++ +V ++ Sbjct: 24 KRLLVAVSGGQDSL---CLIKLLLDLQPKWGWELGIAHCDHRWRADSQANADHVKNLAEN 80 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ + + A ARE RY +S A+ N I+T HT D+ ET+ Sbjct: 81 WGVSFY---LETATKPVNSEATAREWRYQALSAIAQAHNYQYIVTGHTASDRAETLLYNL 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G L + N+ + RP L R+ F + + ED +N D ++ Sbjct: 138 MRGTGADG--LQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKY 195 Query: 200 ERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R R+R+ + + + + V L + ++ + Sbjct: 196 ARNRIRQELIPYLQANFNPQAELAIAQTAELLQADVEYLERTAQQLKEEAMEWEVGEEFL 255 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 S+ LLR++ + R M +++ + + Sbjct: 256 SSSSPSSLLLRLNRQVLQKAPLALQRRVMRQILQEILADAP 296 >gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB5] gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisB5] Length = 347 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 122/287 (42%), Gaps = 13/287 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA I++AVSGG DS+ LL G ++VDH L Sbjct: 9 ISAREASHLFADWKAVPA-IVLAVSGGPDSLALLWLAARWRKALKRGP-ALGVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + L + H + W KP TGL AAAR ARY L+++ AK AT I Sbjct: 67 RPEAAREARAVKQLARTLDLPHRTLRWTGEKPTTGLPAAARAARYRLLAKAAKRFGATHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M D + + RP L ++ + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMARETERDGAV-LVRPLLDVSKQRLIATLS 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234 + I + DPSN D RF R R R + + +L ++ + + + Sbjct: 184 KAQIEYTTDPSNLDPRFTRPRWRELMPRLAAEGCDSRNLARFAARVARADAALELLVDGA 243 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281 + + + + + LL + A GG+ Sbjct: 244 ERFLALRGGGSHPGRGYDAPAFSALAAEIRIRLLLRTLARVGGEGRP 290 >gi|238855042|ref|ZP_04645370.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3] gi|260664826|ref|ZP_05865677.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii SJ-7A-US] gi|282934828|ref|ZP_06340062.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] gi|238832286|gb|EEQ24595.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3] gi|260561309|gb|EEX27282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Lactobacillus jensenii SJ-7A-US] gi|281301100|gb|EFA93410.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1] Length = 412 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 15/239 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA S G DS+ L+ L +K DH +RE + E + + C + + Sbjct: 20 VIVACSAGPDSLALVDMLKDW-------PLKLIVAHFDHQIREDSYLETKLLQQYCQKNK 72 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + V W +T AAAREARY + E AK+ +A ++TAH DD LE + ++ R Sbjct: 73 LMLCVEKWSKHVNKT--EAAAREARYNFLLELAKSWHADYLLTAHHGDDYLENILLKLIR 130 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 M + + ++RP L + ++ +LL +++++ D +N + R Sbjct: 131 SGDPAEMSSLQAVGQM---AGVKLARPLLYYSKAELTKYLLDKHLAFITDETNLTNENLR 187 Query: 202 VRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R V + + A+ + F + + + I + +L Sbjct: 188 NRIRHQVVPLLKKENPAILKNGRVFGQKMLAYQGVAQKAFSDLELEPVAGSLRIKKKLL 246 >gi|237743038|ref|ZP_04573519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 7_1] gi|229433598|gb|EEO43810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 7_1] Length = 448 Score = 182 bits (463), Expect = 7e-44, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + +F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY SE K I A I TAH DDQ+ET Sbjct: 80 NLEIFIKKIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKIGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI ++L + I + D +N + Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILNYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NDFTRNSIRLDLIPFIEKRYNIKFK 217 >gi|78066850|ref|YP_369619.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383] gi|77967595|gb|ABB08975.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383] Length = 473 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 135/378 (35%), Gaps = 27/378 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGMAPDARISIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEASAARLGVAFESMHVDVPRDSGLGVEATARERRYAALDEMCERHGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ +++ RP LR R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSVERVRPLLRLLRAQLERYATQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 +++W +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 DLAWIDDESNHDTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + + L+ D+ + F LLR G S +M R + Sbjct: 244 AELDFAAAARDDGQALSRDALVAFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAT 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T +PE WDG+ + Sbjct: 304 NVAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGRPHPESMLAWDGQEIWHLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPS 366 + + + VP Sbjct: 364 GTFVFAPADAGSADAVPE 381 >gi|331703058|ref|YP_004399745.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801613|emb|CBW53766.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 401 Score = 182 bits (463), Expect = 8e-44, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 105/245 (42%), Gaps = 15/245 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+AVSGG DS+ LL + ++ + A V++ R + ++ V+++C + Sbjct: 10 KKYLIAVSGGPDSVFLLCNVVKLVEPNN-----LVACHVNYNFRSDSNNDQMIVTNLCKQ 64 Query: 80 LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + +++ + + AR RY + A ++ AH +D +ET + Sbjct: 65 LNLKLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLL 124 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + QR+ GL + + +L + RP L ++ I S+L IS+ D +N+D Sbjct: 125 QLQRNNLVDYYGL----RPVSHYKDLVVYRPLLDIKKSQILSYLDTNKISYAIDSTNSDT 180 Query: 198 RFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 +++R ++R + + + L + ++ V+N + I + + + Sbjct: 181 KYQRNKIRATLNENNFTKILDQINKANNNLNSIKKIVDNYLKNNIINNELNLTKELFLLD 240 Query: 254 QDILN 258 Q + Sbjct: 241 QTYIQ 245 >gi|224532919|ref|ZP_03673530.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23] gi|224512157|gb|EEF82547.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23] Length = 440 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++++ + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI + D +N + + R RVR + L A+ K ++ +++ + Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236 >gi|195942001|ref|ZP_03087383.1| hypothetical protein Bbur8_03899 [Borrelia burgdorferi 80a] gi|221217597|ref|ZP_03589066.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a] gi|224533444|ref|ZP_03674037.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a] gi|221192543|gb|EEE18761.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a] gi|224513406|gb|EEF83764.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a] Length = 440 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++++ + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI + D +N + + R RVR + L A+ K ++ +++ + Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236 >gi|225550286|ref|ZP_03771245.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a] gi|225369154|gb|EEG98608.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a] Length = 440 Score = 182 bits (463), Expect = 9e-44, Method: Composition-based stats. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++++ + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI + D +N + + R RVR + L A+ K ++ +++ + Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236 >gi|307294669|ref|ZP_07574511.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1] gi|306879143|gb|EFN10361.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1] Length = 314 Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats. Identities = 83/317 (26%), Positives = 133/317 (41%), Gaps = 29/317 (9%) Query: 7 ESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +R V +L A VAVSGG DSM LL S R A +VDH LR Sbjct: 8 ARLRQAVEALAENAASARFGVAVSGGPDSMALLDLAARAFSGR------VEAATVDHGLR 61 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 E + DE V+D C IAH+ + K + + + + AR RYAL+ E ++ Sbjct: 62 EASADEAAMVADWCGNAGIAHATLHPKGA-VRGNVQSWARSQRYALLEEWRTAQGLDWLL 120 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DDQLET+ MR R + + RP L R+ ++ ++ L+ Sbjct: 121 TAHHADDQLETLLMRLNRGAGVG-------GLAGVRARQGVVLRPLLGMRKAELLAYALE 173 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 +++ + +DPSN+D RF+R +R + +D + + Sbjct: 174 QDLPYIDDPSNSDPRFDRAALRSALAGVDW-----IDAAAAGRSAAALAEAEEALDWMVA 228 Query: 244 VHMRSIIAISQDILNIDST---LLFYLLRVSAAICGGQISLP--GYRSMERVMLFLKSGK 298 + D L +D T V I Q P +++R++ + G+ Sbjct: 229 GIEADHVRPDGDGLALDRTDLPRELLRRLVLRMIGRLQPDAPPQRGEALDRLIAAARKGE 288 Query: 299 RGCVSIGRVVIDRRANF 315 + +SIGR+V+ A++ Sbjct: 289 K--MSIGRLVLKGGAHW 303 >gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris BisA53] gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53] Length = 343 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 85/331 (25%), Positives = 140/331 (42%), Gaps = 20/331 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S ++ F PA I++AVSGG DS+ L++ + G + A+++DH L Sbjct: 9 ISVQQAKLLFADWAKIPA-IVLAVSGGPDSLALMVLAARWRAALKRGP-ELIAVTIDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 RE + E R V + L + H + W+ KP +G+ AAAR ARYAL+++ A++ AT I Sbjct: 67 REASAREARDVKKLAGNLGLPHKTLRWRGDKPTSGIPAAARAARYALLAKAARSTGATHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 TAHT DDQ ETV MR R G+ L ++RP L + + + L Sbjct: 127 FTAHTRDDQAETVLMRLSRGSGLAGLAAMARQSERC---GLQLARPLLGIAKSQLIATLA 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---- 238 + I + DPSN+D RF R R+RR + + R++ N ++ Sbjct: 184 KARIEFAVDPSNSDPRFTRPRLRRLMAAFAEEGCDSRNLARLAARLRRANEALEILVDSA 243 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---- 294 + L ++ + + + LL G + +E ++ L Sbjct: 244 ERSLASDGGGAGWVAGSFAALPAEIRLRLLLRGIDRLGHEG-PAELGKVEALLQELDDAI 302 Query: 295 ------KSGKRGCVSIGRVVIDRRANFLWIT 319 + R ++ +I L I Sbjct: 303 AKTATKRGENRLKRTLAGALITLAGGRLRIE 333 >gi|302835227|ref|XP_002949175.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f. nagariensis] gi|300265477|gb|EFJ49668.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f. nagariensis] Length = 409 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 121/367 (32%), Gaps = 56/367 (15%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +LVAVSGG DS+ LL AL + R + + DH R + +V + Sbjct: 19 LGAAESVLVAVSGGQDSVCLLHALVDL---RPIWGWRLGVVHCDHGWRVDSAVNADFVRE 75 Query: 76 VCSR-LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + ++ L + V + + AARE RY + ++ A +++T HT D+ ET Sbjct: 76 LAAQHLDLPCYVRA--APQGAVPSERAAREWRYRVFADVAFAHGYDVVVTGHTATDRAET 133 Query: 135 VYMRSQRDYAEKGMGLSGMCD--------------------TILYDLNLWISRPFLRCRR 174 + + R G+ ++ + RP L R Sbjct: 134 MLLNLLRGSGPDGLVALARSRPLGSYSPADPTCAPGGELDIPRARSRSVRLVRPLLEFSR 193 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + F+ Q + + D +N + R R+R V ++ + ++V +A Sbjct: 194 SQTQEFVEQLALPYFHDTTNDCNDLRRNRLRNEVLPALRAGFNPRLDQALFRFLEVLDAD 253 Query: 235 AMLI--------------------PKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRV 270 + + +V + ++ + + ++R Sbjct: 254 LEYLTRVTEDLYDNVVSYEYRASSGDHSSVPAQGSSDERMLKLHELRRLPLAMQRRVVRK 313 Query: 271 SAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 + A G S Y + R + L + G +V R L + Sbjct: 314 AGARAGNAPSRVRYEDVARCLALLHAPNRSNSDSLCGGMVASVRDGHLVLW----TPKAA 369 Query: 329 ILYPEET 335 + P + Sbjct: 370 AVEPGWS 376 >gi|53723754|ref|YP_103279.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344] gi|67642950|ref|ZP_00441700.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4] gi|121601180|ref|YP_993468.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1] gi|124383414|ref|YP_001029100.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229] gi|126448974|ref|YP_001080976.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247] gi|167001800|ref|ZP_02267592.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20] gi|254177526|ref|ZP_04884181.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399] gi|254200231|ref|ZP_04906597.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH] gi|254209311|ref|ZP_04915657.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU] gi|254358020|ref|ZP_04974293.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280] gi|61216458|sp|Q62J40|TILS_BURMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52427177|gb|AAU47770.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344] gi|121229990|gb|ABM52508.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1] gi|124291434|gb|ABN00703.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229] gi|126241844|gb|ABO04937.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247] gi|147749827|gb|EDK56901.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH] gi|147750084|gb|EDK57155.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU] gi|148027147|gb|EDK85168.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280] gi|160698565|gb|EDP88535.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399] gi|238524177|gb|EEP87611.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4] gi|243062485|gb|EES44671.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20] Length = 489 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ +D LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|225551664|ref|ZP_03772608.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1] gi|225371691|gb|EEH01117.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1] Length = 440 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++++ + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI + D +N + + R RVR + L A+ K ++ +++ + Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSREFADYF 236 Query: 242 LT 243 Sbjct: 237 EK 238 >gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72] Length = 451 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R I F + + +D +NTD + R R+R+ + L ++ ++ A Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIVRSAGLLSMA 234 Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283 M+ + T+ H + + Q D LN+ + +L +LP Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291 Query: 284 YRSMERVML 292 + + ++ Sbjct: 292 SHQLTQQVI 300 >gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC 6260] Length = 471 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 76/372 (20%), Positives = 142/372 (38%), Gaps = 46/372 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + +A+SGG DSM L L ++ +I++DH R ++ E + V+ V Sbjct: 22 APRRLAIALSGGVDSMCLAYLLSQYKQVYE-PSLELHSITIDHGYRSDSEIEAQKVAQVV 80 Query: 78 SRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I SV K N + AR RYA + N ++ AH DDQ+ET Sbjct: 81 QNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIET 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISW 188 R +++ + G+ T+ N + + RP L+ + ++ S + I W Sbjct: 141 FIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQW 200 Query: 189 CEDPSNTD-DRFERVRVRRFVRDIDLHALYLK---MKKFQDLRVKVNNAVAMLIPKYLTV 244 ED +N D + ER R ++ D ++ + ++ F ++ VN + L V Sbjct: 201 FEDSTNQDANLTERNFWRSELKKPDDESVINRDQFLQTFSEVETVVNELRKKVKALKLHV 260 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERVMLFLKSGKR- 299 +++ + + + +L +A+ QI P S + ++ K + Sbjct: 261 FGTEECEYARNG-TLSFQIQYSVLSNLSAMVFSRFLFQILHPISASRDYHWMYAKLERHA 319 Query: 300 -GCVSIGRVV-----------------IDRRANFLWITRAVRNLP--------TLILYPE 333 + VV I+R + L + +P T I Sbjct: 320 VPRIMKHFVVSQNRVALRLTYLNILWNIERIEDTLHFHFERQPIPQNEYAHISTSINPDG 379 Query: 334 ETTVWDGRYQFQ 345 ++T++D R+ + Sbjct: 380 KSTLFDNRFWIR 391 >gi|167739278|ref|ZP_02412052.1| putative cell cycle protein [Burkholderia pseudomallei 14] Length = 489 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ +++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALVDVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ +D LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|254247829|ref|ZP_04941150.1| PP-loop [Burkholderia cenocepacia PC184] gi|124872605|gb|EAY64321.1| PP-loop [Burkholderia cenocepacia PC184] Length = 473 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 136/396 (34%), Gaps = 27/396 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + G+ A ARE RYA + E + + Sbjct: 69 ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ +++ RP LR R + + Q Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237 ++W +D SN D R+ R +R V L AL + F+D + L Sbjct: 188 ALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 238 IPKYLTVHMRSII-AISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294 V R A+S+D L D T LLR G S +M R + Sbjct: 244 AELDFAVAARDDGHALSRDALAGFDDTRGANLLRFWMRRLGLPGASATRLANMMRQLRAA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T PE WDG + Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGEEVWHLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384 + + + VP + A + + Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399 >gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211] gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211] Length = 529 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 80/319 (25%), Positives = 126/319 (39%), Gaps = 30/319 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DS+ LL+ H + + A + DH LR + +V +V DVC+RL Sbjct: 19 VLVAVSGGADSVALLLGAHEAGA-------RVVAATFDHQLRADSAQDVAFVQDVCARLG 71 Query: 82 IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V V+ + AAAR RYA ++ AK +I+TAHT D ET M Sbjct: 72 VPCEVGGADVARVARARGWSVEAAARTLRYAFLTRAAKARRVDVILTAHTARDDAETYLM 131 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + R A T + + N + RP+LR R D+ ++L R +W EDPSN D Sbjct: 132 EALRGEA---------HPTGIPEANGHVRRPWLRAARADVEAYLQARAQAWREDPSNADT 182 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 F R VR V + L + +D + + R + + L Sbjct: 183 YFTRNWVRHAVMPV----LTAREAGAEDRLARTARLAREDDAALEALAARVTPHMPKGAL 238 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANFL 316 + + + ++ + L +G V++ + L Sbjct: 239 --PRAVRRRYVTRALRSARAAYHA---EHVDALADALANGGTTHVTLPGARTVTVTDGEL 293 Query: 317 WITRAVRNLPTLILYPEET 335 +T P + P T Sbjct: 294 HLTPPATPTPEFPIPPGWT 312 >gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC 6260] Length = 471 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 76/372 (20%), Positives = 140/372 (37%), Gaps = 46/372 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + +A+SGG DSM L L ++ +I++DH R ++ E + V+ V Sbjct: 22 APRRLAIALSGGVDSMCLAYLLSQYKQVYE-PSLELHSITIDHGYRSDSEIEAQKVAQVV 80 Query: 78 SRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I SV K N + AR RYA + N ++ AH DDQ+ET Sbjct: 81 QNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIET 140 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISW 188 R +++ + G+ T+ N + + RP L+ + ++ S + I W Sbjct: 141 FIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQW 200 Query: 189 CEDPSNTD-DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 ED +N D + ER R ++ D ++ + +F ++V V L K + + Sbjct: 201 FEDSTNQDANLTERNFWRSELKKPDDESVINR-DQFLQTFLEVETVVNELRKKVKALKLH 259 Query: 248 SIIAISQDILN---IDSTLLFYLLRVSAAICGG----QISLPGYRSMERVMLFLKSGKR- 299 + + + + +L +A+ QI P S + ++ K + Sbjct: 260 VFGTEECEYARNGTLSFQIQYSVLSNLSAMVFSRFLFQILHPISASRDYHWMYAKLERHA 319 Query: 300 -GCVSIGRVV-----------------IDRRANFLWITRAVRNLP--------TLILYPE 333 + VV I+R + L + +P T I Sbjct: 320 VPRIMKHFVVSQNRVALRLTYLNILWNIERIEDTLHFHFERQPIPQNEYAHISTSINPDG 379 Query: 334 ETTVWDGRYQFQ 345 ++T++D R+ + Sbjct: 380 KSTLFDNRFWIR 391 >gi|134277776|ref|ZP_01764491.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305] gi|254297086|ref|ZP_04964539.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e] gi|134251426|gb|EBA51505.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305] gi|157807057|gb|EDO84227.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e] Length = 489 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114] gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114] Length = 333 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 15/320 (4%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 + F+ + ++ VSGG DSM L DR+ F + +DH +R+ + E Sbjct: 23 KNFLDKNLKEKKFVIGVSGGPDSMALAYLSKVYSIDRNK---TFECVIIDHGVRKNSGKE 79 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + V + +I ++ K + + + AR RY I E K I+ H D Sbjct: 80 AKKVKSALLKHKIKSNIFKIKF-ENSSNFHSEARVKRYDKIIEFCKRKKVKKILLGHHLD 138 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ+E Y+R R GLS + Y N++ RPFL ++ ++ + Sbjct: 139 DQVENFYIRLSRGSGL--TGLSPIKKVSKY-KNIYFLRPFLNTKKNELVKIAKKNFSFSV 195 Query: 190 EDPSNTDDRFERVRV---RRFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 DPSN D++ R RV R F+ L L + + + KY+T Sbjct: 196 NDPSNFKDKYLRSRVRKLRNFMEKEGLGDQRLLKTLTNLDKASEALEFYSNQAVKKYITK 255 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 +I IS+ + + ++F + + + P + ++R++ L V++ Sbjct: 256 -KGNISNISKKLFKEPNEVIFRSISFF--LTKKKSYPPRAKGIDRLITDLSKNNTNKVTL 312 Query: 305 GRVVIDRRANFLWITRAVRN 324 G V + N + + + R Sbjct: 313 GGYVFENGLNLVKVKKENRK 332 >gi|332662835|ref|YP_004445623.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100] gi|332331649|gb|AEE48750.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100] Length = 449 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 73/349 (20%), Positives = 123/349 (35%), Gaps = 36/349 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M E + + L L+AVSGG DS+ L + I F+ ++ Sbjct: 1 MLKEFQEYLTKLIGDLPSNYQFLLAVSGGKDSVVLADLFYC-------SGIPFAIAHINF 53 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115 LR E + + R+V + R + ++ + AAR RY + + Sbjct: 54 QLRGEESDGDERFVKALAKRCEVECFTMLADTKAYGAEHKLSTQMAARTIRYTWLEQTRA 113 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 T N I+TAH +D +ET+ + KG + + +N + RP L R+ Sbjct: 114 THNLDYIVTAHHLNDTVETILYNLAKGSGIKG-------NLGIPAINGRVIRPLLFATRK 166 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLR 227 I ++ Q ++ ED SN + R +R V L L ++ +Q + Sbjct: 167 SIDAYYTQEQLAHREDASNAQVGYARNWIRHQVVP-GLQKLNPSLELTIGRNMVYWQQIY 225 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRS 286 A L K+ T H + + D L LL G G + G Sbjct: 226 AWFEQEAAQL--KHHTWHSDAHRHTIELDSIQDHPALHTLLFHWLQTFGFGAEQIAG--- 280 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335 + +L K GK + ++ + I +L+PE Sbjct: 281 ISAAVLAQKQGKLFLSKTHKALL--HQGKIIIEAQSTQGQEAVLWPEGE 327 >gi|296113823|ref|YP_003627761.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4] gi|295921517|gb|ADG61868.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4] Length = 451 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 28/310 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAIS 57 M + S+ L PAH + +A SGG DS+ L A + R I+ + + Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLL--HRQGKIIRLPTILH 58 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 V H + ++ V ++ +K AR+ARY Sbjct: 59 VHHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ- 114 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRC 172 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 -GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKI 173 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R I F + + +D +NTD + R R+R+ + L ++ ++ Sbjct: 174 SRNQISQFAKAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIVRSAGLLSM 233 Query: 233 AVAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLP 282 A M+ + T+ H + + Q D LN+ + +L +LP Sbjct: 234 ASTMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALP 290 Query: 283 GYRSMERVML 292 + + ++ Sbjct: 291 PSHQLTQQVI 300 >gi|262066540|ref|ZP_06026152.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC 33693] gi|291379774|gb|EFE87292.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC 33693] Length = 452 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 26/314 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79 I+V SGG DS+ L+ L + F K K + ++H LR E A + + D + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---DFFKFKIYLVHINHLLRGEDADADENFSYDYARKN 79 Query: 80 -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L I + K +TG L RE RY SE + A I TAH DDQLET Sbjct: 80 SLEIFAKRIPVKEIAKETGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQLETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGTSLQGL-------EGIKLKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + F R +R + +K K F + N L+ + + + + Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFKDKLFSLIEEIRENNKKNLLDLDEYTDKENRLTLEK 252 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDR 311 I + LF + + ++ + ++S + + RVV D Sbjct: 253 ----IKALSLFERKNLLVLFLNKKNIKINRNKIDEINSLIRSNGTKKIDLDLNHRVVKDY 308 Query: 312 RANFLWITRAVRNL 325 L+I + + Sbjct: 309 H--HLYIEKKEEKI 320 >gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1] gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1] Length = 451 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R I F + + +D +NTD + R R+R+ + L ++ ++ A Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234 Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283 M+ + T+ H + + Q D LN+ + +L +LP Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291 Query: 284 YRSMERVML 292 + + ++ Sbjct: 292 SHQLTQQVI 300 >gi|237812903|ref|YP_002897354.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346] gi|237506736|gb|ACQ99054.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346] Length = 489 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ +D LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|257456705|ref|ZP_05621895.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Treponema vincentii ATCC 35580] gi|257445898|gb|EEV20951.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Treponema vincentii ATCC 35580] Length = 485 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%) Query: 6 IESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++V ++ +V + H L+A SGG+DS LL+A + S + SA++V+H +R Sbjct: 7 VDAVFHNLKPIVGNSSCHFLLACSGGADSTALLLAFRQLQPVLS---CRLSAVTVNHNIR 63 Query: 64 --ETAKDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 E + + +V+ +CS I + V+ + G AAR RY L + Sbjct: 64 SAEESAADSAFVAGLCSGFEPAIPCIIEEIPAGEVARYAKERGRGTEDAARTLRYRLFEK 123 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A +++A I+TAH D ETV MR + + + + RP + Sbjct: 124 TADSVSADFIVTAHNLSDVYETVLMRLFQGGGTASLSIMPV-------RRGRYLRPLITV 176 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R I FL Q+ I W ED +N + + R R+R ++ L AL ++ K Sbjct: 177 ERNSIEEFLRQQGIVWREDATNAGNTYLRNRIRHYL----LPALSQAFGGWRAGLDKTLQ 232 Query: 233 AVAM 236 +A+ Sbjct: 233 RIAL 236 >gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5] gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5] Length = 338 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 19/328 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ + F PA +++AVSGG DS+ LL G A++VDH L Sbjct: 11 ISAQEARQLFAGWKNLPA-LVLAVSGGPDSVALLWLAARWRRSLKKGP-DLLAVTVDHGL 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + S L IAH ++W+ +KP+TG+ AAREARY L++ A++ +A I Sbjct: 69 RAAAAHEAREVKRLASALGIAHRTLTWRGTKPKTGVPEAAREARYELLARAARSASAVAI 128 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 TAHT DDQ ET+ MR R GL+GM + + RP L + + + L Sbjct: 129 ATAHTQDDQAETILMRLTRGSGL--TGLAGMAAQSERH-GVALLRPLLDVPKARLVATLN 185 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----- 237 + I++ DP+N D + R R+R + + F L ++++ A A L Sbjct: 186 RAKIAYANDPTNHDPAYTRSRLRAMMPVLASEG--ADAHTFARLAMRLSRADAALERMTD 243 Query: 238 -IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVML--- 292 +YL + + + + LLR + A + P +E ++ Sbjct: 244 GAERYLRLRGGGGEGFDAALFATLTEEIQVRLLRRALAAH-VSVHAPELGQIEALLRGMA 302 Query: 293 -FLKSGKRGCVSIGRVVIDRRANFLWIT 319 + G+R S+G + + L + Sbjct: 303 EAEREGRRFKRSLGGMTVGVEKGRLVVR 330 >gi|161504644|ref|YP_001571756.1| hypothetical protein SARI_02765 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865991|gb|ABX22614.1| hypothetical protein SARI_02765 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 365 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 116/326 (35%), Gaps = 29/326 (8%) Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C R ++ V + G+ A AREARY ++ + ++ TA DDQ ET Sbjct: 2 CERWQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFL 59 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R G+ G + RP L R+ + + ++ + W ED SN D Sbjct: 60 LALKRGSGPAGLSAMGERSPFA---GTQLLRPLLEETRKTLELWAVRHGLCWIEDESNQD 116 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIAIS 253 D ++R +R L L + F + A L+ + LT + I + Sbjct: 117 DAYDRNFLRLR----ALPLLQRRWPHFSAAVARSAALCAEQERLLDELLTSDLTDCI-TA 171 Query: 254 QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306 + L + + +R +A + +P ++ER+ + C+ G Sbjct: 172 RGTLRLSPLMSMSDVRRAAILRRWLATRNAPMPSRDALERIWREVALARDDASPCLRFGD 231 Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366 I R + LW + ++ E T W L L + + +P Sbjct: 232 HEIRRYQSQLWW------IKSIAGQSETTIAWPVWQTPLALPAGLGSVQLVPGGELRLPR 285 Query: 367 GIPPIIAQ---RALSSMPSKEGGKPL 389 + + L + + GG+ L Sbjct: 286 EEESVSIRFKASGLLHIVGRHGGRKL 311 >gi|307720468|ref|YP_003891608.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294] gi|306978561|gb|ADN08596.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294] Length = 330 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + + L+A S G DS LL L I F VD+ RE +K+EV Y Sbjct: 7 KEDLRKSKNLLAFSAGGDSTALLFMLLE-------NNIPFDIAIVDYGTREQSKEEVAYA 59 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + + ++ A AR+ RY + + ++TAH D+ E Sbjct: 60 KALAKQYNFTCNVH--QAKEIESNFEANARKIRYDFFETLIQEHDYDTLLTAHHLGDRFE 117 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + M+ + L+GM + L + RP L ++++ +L NI + ED S Sbjct: 118 WMLMQFCKGAGC--AELAGMQEKALR-NGYILYRPLLHVDKQELLEYLHGNNIKYFEDKS 174 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK 222 N+D+++ R R L +KK Sbjct: 175 NSDEKYTRNTFRHNYTKPLLEKYLQGIKK 203 >gi|53719849|ref|YP_108835.1| putative cell cycle protein [Burkholderia pseudomallei K96243] gi|254184420|ref|ZP_04891010.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655] gi|61216466|sp|Q63ST1|TILS_BURPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|52210263|emb|CAH36242.1| putative cell cycle protein [Burkholderia pseudomallei K96243] gi|184214951|gb|EDU11994.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655] Length = 489 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|126454111|ref|YP_001066846.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a] gi|242315465|ref|ZP_04814481.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b] gi|126227753|gb|ABN91293.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a] gi|242138704|gb|EES25106.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b] Length = 492 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|76811958|ref|YP_334064.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b] gi|167916722|ref|ZP_02503813.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 112] gi|217420494|ref|ZP_03451999.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576] gi|226199017|ref|ZP_03794580.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan 9] gi|254191453|ref|ZP_04897957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254197535|ref|ZP_04903957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13] gi|254258079|ref|ZP_04949133.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a] gi|76581411|gb|ABA50886.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b] gi|157939125|gb|EDO94795.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur 52237] gi|169654276|gb|EDS86969.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13] gi|217395906|gb|EEC35923.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576] gi|225929117|gb|EEH25141.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan 9] gi|254216768|gb|EET06152.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a] Length = 492 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|134296080|ref|YP_001119815.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4] gi|134139237|gb|ABO54980.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4] Length = 468 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 132/380 (34%), Gaps = 27/380 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + L A I +A SGG DS LL + R G + A+ V H L Sbjct: 14 LDAVGAALSGLPADARIAIAYSGGLDSTVLLD-----AAVRVAGAARCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V Y RL + + G+ A ARE RYA + + + Sbjct: 69 ADAWVAYAQATAERLGVTFESERVDVPRDSGLGIEATARERRYAALDAMCERHGVAALWI 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP LR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 ++W +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 ELAWIDDESNADTRYARNALRLDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + L+ D+ + F LLR G S +M R + Sbjct: 244 AELDFAGAARDDGRALSRDALIAFDDTRGANLLRYWMRKLGLPGASAGRLANMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT----LILYPEETTVWDGR--YQFQNLS 348 V + + ++ A P +P+ + VW+G + Sbjct: 304 HDAHALRVDHAGQCLRLYRDAVYWELADSAEPPDDGTGTPHPDSSLVWNGDEVWHLPAWR 363 Query: 349 DSLIQIGPQSYRKADVPSGI 368 + + ++ VP + Sbjct: 364 GTFVFAAAEAGSDGAVPEAL 383 >gi|294783791|ref|ZP_06749115.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA] gi|294480669|gb|EFG28446.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA] Length = 452 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 118/311 (37%), Gaps = 30/311 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + +F K K + ++H LR E A + + D R Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---NFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V V K L RE RY SE + A I TAH DDQ+ET Sbjct: 80 NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ L N I RP ++DI +L + I + D +N + Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYSN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + F R +R + +K K F + N + V + + + + Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFKDKLFSLIEEIRENNKKNFLDLDEYVDEENRLTLEK 252 Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVI 309 + + L+ +L + + I ++ + +KS + + I Sbjct: 253 IKTLSLFERKNLLVHFLNKKNIKI--------NRNKIDEINSLIKSDGTKKIDLDLNFRI 304 Query: 310 DRRANFLWITR 320 + + L+I + Sbjct: 305 VKDYHHLYIEK 315 >gi|15595133|ref|NP_212922.1| hypothetical protein BB0788 [Borrelia burgdorferi B31] gi|216264898|ref|ZP_03436890.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a] gi|218249437|ref|YP_002375287.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7] gi|223889299|ref|ZP_03623886.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b] gi|225549361|ref|ZP_03770333.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a] gi|226321219|ref|ZP_03796753.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805] gi|226321253|ref|ZP_03796781.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26] gi|6136576|sp|O51728|TILS_BORBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695536|sp|B7J0N4|TILS_BORBZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2688713|gb|AAC67121.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|215981371|gb|EEC22178.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a] gi|218164625|gb|ACK74686.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7] gi|223885220|gb|EEF56323.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b] gi|225369989|gb|EEG99430.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a] gi|226233285|gb|EEH32036.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26] gi|226233373|gb|EEH32120.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805] gi|312147795|gb|ADQ30454.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi JD1] gi|312149540|gb|ADQ29611.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi N40] Length = 440 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 25/240 (10%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R Sbjct: 14 KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67 Query: 68 DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++++ + AR+ RY + K A Sbjct: 68 QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G LSG+ +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDG--LSGIPS-----VNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI + D +N + + R RVR + L A+ K ++ +++ + Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236 >gi|167903369|ref|ZP_02490574.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei NCTC 13177] Length = 492 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGACFGAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ +D LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|329943107|ref|ZP_08291881.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10] gi|332287689|ref|YP_004422590.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC] gi|325506432|gb|ADZ18070.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC] gi|328814654|gb|EGF84644.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10] Length = 317 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/262 (24%), Positives = 100/262 (38%), Gaps = 19/262 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F +L L+A+SGGSDS+ LL L S + F+A+ VD+ RE++ Sbjct: 10 KRLEVFFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESS 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 E + C + V + K AAR RY L + + N I A Sbjct: 63 YREAEELKLRCQEEGVPLIVNHVPSKDKTSKDPENAARRYRYELFYKICREENLAGIFLA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV R L GM Y + + RP L ++ + L N Sbjct: 123 HHANDQAETVLKRVLEGAHLG--NLKGMTSEASY-NGIPLLRPLLHIPKQILIHTLDAEN 179 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAML 237 I + D +NTD+R+ R R+R + L + ++L + Sbjct: 180 IPYVHDVTNTDERYLRARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPF 239 Query: 238 IPKYLTVHMRSIIAISQDILNI 259 + H I I + ++ Sbjct: 240 LENIRQEHTTWSIEIPKSLIEQ 261 >gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060] gi|254789037|sp|B8IP16|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060] Length = 339 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 23/330 (6%) Query: 7 ESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 E R R L A +++AVSGG DS L+ + R + +VDH LR Sbjct: 12 EFARRLDRWLGPGAAGGVVLAVSGGPDSTALM-----GGAARLPPLVPVMVATVDHGLRP 66 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A E V+ + RL + H +++W KP+T L AAR ARY L+ + A+ A ++T Sbjct: 67 EAAAEAEAVARLAGRLGLPHRILAWTGPKPRTRLQEAARAARYRLLLDLAREQGAAALLT 126 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV MR G+G + + + L + RPFL + + + Sbjct: 127 AHTLDDQAETVLMRLCAGSGPAGLGG---IEPVRHLGGLALVRPFLDLPKARLVATCAAE 183 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT- 243 + DP N D RF R R+RR + + L R++ N A Sbjct: 184 GWPFVVDPGNADARFARGRLRRVMPHLAAEGLTAARLARLAERLRRNEAALAAAADAALD 243 Query: 244 ------VHMRSIIAISQDILNIDSTLLFYLLRVSAA-ICGGQISLPGYRSME-----RVM 291 ++ ++ + + + +L + A + GG +E R++ Sbjct: 244 ALARPGARPGGMMLDARGLAVLPEAVALRVLARAIATVVGGNARPARLERLEDVLFGRLL 303 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + +G R ++G ++ L ++ Sbjct: 304 PAIAAGGRLRCTLGGALLHLSGGSLSLSPE 333 >gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp. IMCC9063] gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp. IMCC9063] Length = 346 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 135/312 (43%), Gaps = 13/312 (4%) Query: 24 VAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VA SGG DS+ L A + S+++ + F I VDH +R + E + V ++ Sbjct: 41 VACISGGPDSLALA-ACSKIYSEKNHTNV-FYLI-VDHNIRANSALEAKRVQKNLLKISA 97 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++ K + + AR+ RY ++S+ K + ++TAH DDQ+E Y+R R Sbjct: 98 KAKILTIKKIISR-SIQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQIENFYIRLSRG 156 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G+ + + + I RPFL ++ + + ++ +DPSNT+DRF R Sbjct: 157 SGLQGLSSMKIAEKN--KEKITIVRPFLSSSKKILIQVAKKIFTTFIKDPSNTNDRFLRS 214 Query: 203 RVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R+ +++ L + + ++ V KY+ + + I I + Sbjct: 215 RIRKLKSNLEKEGLDQTRILKTIDNLNTAKEAIDFYVCYSEKKYIQTKLNNKIQIDLKLF 274 Query: 258 N-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 S + + ++ + P + + +M ++ V++G + + + Sbjct: 275 QEQPSEISYRVIASLIKKKSKKDYPPRAKGILNLMDSVQKKNFKRVTLGGFMFNLSGKKI 334 Query: 317 WITRAVRNLPTL 328 +T+ RN + Sbjct: 335 IMTKENRNNKEI 346 >gi|225011777|ref|ZP_03702215.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A] gi|225004280|gb|EEG42252.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A] Length = 434 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 142/401 (35%), Gaps = 54/401 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 IL+A SGG DS + L ++ FS + LR E + + V C Sbjct: 18 GKQILLAHSGGLDSSVMADLLVK-------AQVPFSVAHCNFQLRGEESNSDAGLVKAWC 70 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I V + + + AAR+ RY+ E ++TAH +DQLE Sbjct: 71 FDNSIPFFSVEFATLEYKKYHKKSTQLAARDLRYSWFDEIMDGYAFDFLVTAHHLNDQLE 130 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + + R GL G+ + + RP ++++ + + + W ED S Sbjct: 131 TFLINTTRGTGV--SGLLGIQER------EHLLRPLRSIPKKELIQYAKEHGVIWNEDSS 182 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D + R VR V I + + FQ + I L + + I Sbjct: 183 NASDDYLRNEVRHHVIPIIEDIVPNALHNFQSTLDHLL-LTNDFIQTSLETLKQKLFIIE 241 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERV-MLFLKSGKRGCVSIGRVVIDR 311 ++ + I + L S C + P G+ S E V +L +SGK R++ R Sbjct: 242 KEHIKI--EIKGLLKLPSLLFCVHHLFSPYGFNSKEVVKLLNSESGKILYSETHRLI--R 297 Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD---------SLIQIGPQSYRK- 361 +FL + +IL + N S L+ I +S+R Sbjct: 298 DRSFLILIEKRLEEEQIIL-----------FDPNNPSSNLPINLKCEHLVNIDSRSWRPN 346 Query: 362 --ADVPSGIPPIIAQRALSS----MPSKEGGKPLLAPFSRF 396 A I + R P+ GK LL+ F + Sbjct: 347 QAALDQKLIKKHLFLRKFKKGDYFYPAGMKGKKLLSKFFKD 387 >gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110] gi|61216753|sp|Q9XBG6|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum] gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 5/213 (2%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ + F PA +++AVSGG DS+ L+ + G + + ++VDH L Sbjct: 9 ISAREAKQLFAELKSAPA-LVLAVSGGPDSIALMWLAARWQRSLARGP-RLTVVTVDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V + + L + H + W+ +KP+TGL AAAREARY L+ + A++ A+ + Sbjct: 67 RAEAAREAREVKRLATELGLPHRTLRWRGAKPKTGLPAAAREARYRLLMQAARSAGASHV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ET+ MR R G+ + + ++RP L + + + L Sbjct: 127 LTAHTRDDQAETLLMRLVRGSGLAGLSAM---ARLTERDGIVLARPLLDVPKAQLIATLK 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + I + +DP+N D F R R+R + + Sbjct: 184 RAKIGFADDPTNRDTAFTRPRLRALLPQLAAEG 216 >gi|75906734|ref|YP_321030.1| PP-loop [Anabaena variabilis ATCC 29413] gi|75700459|gb|ABA20135.1| PP-loop [Anabaena variabilis ATCC 29413] Length = 342 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 109/297 (36%), Gaps = 13/297 (4%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I S F R+ +LVAVSGG DS+ + +L + + DH R Sbjct: 12 RTIRSRHLFERN----QRLLVAVSGGQDSL---CLIKLLLDLQLKWGWELGIAHCDHRWR 64 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ +V ++ ++ + + A ARE RY +S A+ N I+ Sbjct: 65 VDSQANADHVKNLSETWGVSFY---LETASKPINSEATAREWRYETLSAIAQAYNYEYIV 121 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT D+ ET+ R G L + N+ + RP L R+ F + Sbjct: 122 TGHTASDRAETLLYNLMRGTGADG--LQALTWQRPLTENILLVRPLLEITRKQTEQFCQE 179 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYL 242 + ED +N D ++ R R+R+ + + + + V L Sbjct: 180 FQLPIWEDSTNQDLKYARNRIRQELIPYLQANFNPQAELAIAQTAELLQADVEYLERTAQ 239 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + +++ + S+ +LLR++ + R M +V+ + + Sbjct: 240 QLKEKAMEWEVGEEFLSPSSPSPFLLRLNRQVLQKAPLALQRRVMRQVLQEILADAP 296 >gi|288819201|ref|YP_003433549.1| cell cycle protein [Hydrogenobacter thermophilus TK-6] gi|288788601|dbj|BAI70348.1| cell cycle protein [Hydrogenobacter thermophilus TK-6] gi|308752783|gb|ADO46266.1| tRNA(Ile)-lysidine synthetase [Hydrogenobacter thermophilus TK-6] Length = 316 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 134/328 (40%), Gaps = 28/328 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDH 60 L + +++ + + A +LVA SGG DS+ + ++L + F K+ + + ++H Sbjct: 5 LLRKVITLQRRKKLIPEHASVLVAFSGGIDSV---ALVLALLELKDFFKLKRVALAHINH 61 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116 +R + + + + R R+ V + K L A ARE RY + + Sbjct: 62 GIRAQSDRDEDFAVEFARRKRLEIFVERFHVKKMAEEEGENLEALAREVRYKALRSIKQK 121 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +I TAH +D +ETV + R +G+ T + I RP +E+ Sbjct: 122 EGFDIIATAHHLNDLVETVILWLVRGAGLEGL-------TGFDEKTEDIVRPLYLVTKEE 174 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233 I+ F++ R +W ED +N D + R R+R V +L + + +D+ K Sbjct: 175 IKDFVISRGEAWVEDATNYDINYARNRIRHRVLPELKKINASLEDSVLRLRDILKKEGEF 234 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + K L + + ++ L ++ + I R +++V+ Sbjct: 235 INEQALKALKECTQGQALRRDVLTSLHPALQRRVIYLWLGIR-------DLRKIDQVLSL 287 Query: 294 LKSGKRGCVSIG-RVVIDRRANFLWITR 320 K G G + +G + ++L++ R Sbjct: 288 AKKG--GIMELGDGKRLKAEGDYLYLQR 313 >gi|238927155|ref|ZP_04658915.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531] gi|238884937|gb|EEQ48575.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531] Length = 463 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 115/306 (37%), Gaps = 20/306 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 + +L A SGG+DS+ LL L + R+ G +H +R +++ + V+ Sbjct: 17 PNSSVLCACSGGTDSLALLDVLMRL---RAEGGPHVMCAHYEHGIRGGSSRADADAVAAY 73 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C+ I + V + + + AAR RY + I AH DD Sbjct: 74 CAEHHIPCVIEAGDVPYYARAHKCSIETAARVCRYDFLHRVHIREQCDGIALAHHADDLA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R G+ + D + RPFL R +I ++ + N+ C D Sbjct: 134 ETVLMRILRGTGPAGLAAMRVWDGVH-------LRPFLFTARAEIEVYIREHNLRPCHDV 186 Query: 193 SNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +N +R R+R +R A+ + + L + ++ +A L + L + Sbjct: 187 TNDQQDIQRNRIRHALLPELRTYGNPAVDDALVRLSILSAEEDDYLAQLAAEELRRAVCR 246 Query: 249 IIAISQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + + + + +LR+ A+ Q R +L + + + G Sbjct: 247 DGLSAAAVRALHPAMQRRVLRLFWASTTKEQDFSYHQEERMRALLASRGTAQCSLPHGWT 306 Query: 308 VIDRRA 313 + R Sbjct: 307 AVLRYD 312 >gi|330817518|ref|YP_004361223.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3] gi|327369911|gb|AEA61267.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3] Length = 477 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 126/326 (38%), Gaps = 26/326 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++VR + L A I +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVRVALGELPEHATIAIAYSGGLDSSVLLEA-----AARVAGAERCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + L + V + + G+ A+ARE RY + + A + Sbjct: 69 ADAWLAHAEAAAAALGVRFDVERVEVPRGTGLGVEASAREVRYRALDAMGERHGAQALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + ++ RP L R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGIAAMA-PRYLPAEASMVRVRPLLHLLRAQLERYAEAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SN D R+ R +R V L AL + F+D + A + Sbjct: 188 RLRWIDDESNADTRYTRNALRIEV----LPALSVHFPGFRDALARTAQHAAAAQRLLDAL 243 Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + I++D +L +D LLR G LPG S R+ +K Sbjct: 244 AAGDLAEIARDEGRALSRERLLALDDERGANLLRHWMRTLG----LPG-ASAARLAEMIK 298 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRA 321 + VS + ID L + R Sbjct: 299 QLRATQVS-HALRIDHAGQCLRLYRE 323 >gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1] gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8] Length = 457 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 7 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 65 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 66 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 120 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 121 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 180 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228 R I F + + +D +NTD + R R+R+ + ++ A+ ++ L + Sbjct: 181 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 240 Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 +V +A L + + ++ I D LN+ + +L +LP Sbjct: 241 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 296 Query: 283 GYRSMERVML 292 + + ++ Sbjct: 297 PSHQLTQQVI 306 >gi|307546377|ref|YP_003898856.1| cell cycle protein [Halomonas elongata DSM 2581] gi|307218401|emb|CBV43671.1| cell cycle protein [Halomonas elongata DSM 2581] Length = 426 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 115/331 (34%), Gaps = 20/331 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + VA+SGG DS LL A+ + H L+ A D R+ ++ Sbjct: 20 PPGRAVWVALSGGLDSSLLLTLAVEASRRHPRP---LRALHIHHGLQAAADDFERHCREL 76 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C RL ++ V GL AAR ARYA + + A DDQ ET Sbjct: 77 CERLGVSLCVERVDVDVSGGQGLEGAARHARYAAFRRCLEA--GDTLWLAQHRDDQAETF 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + R +G+ + ++RP+L R + + +R ++W EDPSN Sbjct: 135 LLAALRGAGPRGLAAMPVERGQ---AGFRLARPWLGVSRAALEAEAARRGLTWVEDPSNA 191 Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + +R +R V + + +L + + + + L + Sbjct: 192 ETVQDRNFLRHRVMPALQARWPGAGAALARSAELAGEADGLLDEFAAEDLERLGGDPGRL 251 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVID 310 D L + S LL G S P R ++ ++ L + + Sbjct: 252 VVDSLMVMSAARRRLLIRHCLSRLGLSSPPARR-LDSLLGQLEARHDAEVRIVWEGAEAR 310 Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGR 341 L++ + L P WDGR Sbjct: 311 VWRKALYLM-----ATPVPLPPAWRAEWDGR 336 >gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1] Length = 451 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228 R I F + + +D +NTD + R R+R+ + ++ A+ ++ L + Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234 Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 +V +A L + + ++ I D LN+ + +L +LP Sbjct: 235 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 290 Query: 283 GYRSMERVML 292 + + ++ Sbjct: 291 PSHQLTQQVI 300 >gi|237739225|ref|ZP_04569706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 2_1_31] gi|229422833|gb|EEO37880.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 2_1_31] Length = 452 Score = 181 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 117/311 (37%), Gaps = 30/311 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + F K K + ++H LR E A + + D R Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---DFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V V K L RE RY SE + A I TAH DDQ+ET Sbjct: 80 NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYDKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R G L G+ L N I RP ++DI +L + I + D +N + Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + F R +R + +K K F + N + V + + + + Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFKDKLFSLIEEIRENNKKNFLDLDEYVDEENRLTLEK 252 Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVI 309 + + L+ +L + + I ++ + +KS + + I Sbjct: 253 IKTLSLFERKNLLVHFLNKKNIKI--------NRNKIDEINSLIKSDGTKKIDLDLNFRI 304 Query: 310 DRRANFLWITR 320 + + L+I + Sbjct: 305 VKDYHHLYIEK 315 >gi|315185670|gb|EFU19438.1| tRNA(Ile)-lysidine synthetase [Spirochaeta thermophila DSM 6578] Length = 472 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 99/260 (38%), Gaps = 25/260 (9%) Query: 6 IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E V F + V A +LVA SGG DS LL +L + R + + +DH +R Sbjct: 2 LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALLHSLFLL---RQRLNLTLKVVYLDHGIR 58 Query: 64 E--TAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114 E R+V + + + + + + ARE RYA E Sbjct: 59 PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + HT DDQ+ETV R R + L GM RP L C R Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDP--LALRGMSPVR-----DRYLRPLLSCSR 171 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ SFL ++ +S+ ED SN D ++R +R V L L + + V ++ Sbjct: 172 SEVLSFLQEQGLSYLEDSSNEKDSYDRNFLRIHV----LPLLEKRFPGWTKAVVALSEKA 227 Query: 235 AMLIPKYLTVHMRSIIAISQ 254 + I I + Sbjct: 228 ELYHRYLERRVPVGEIPIEE 247 >gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] Length = 514 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 73/317 (23%), Positives = 126/317 (39%), Gaps = 30/317 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+ + + L +++AVSGG DS+ L + + +DH LR + Sbjct: 11 EAFQKRLARLAPRGPLVLAVSGGGDSVALAHLVKRAGREG-------VVAHLDHALRPES 63 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLI 122 ++ +V + RL + ++ + L A ARE RYA + A+ + A I Sbjct: 64 GGDLLFVKALAERLGYPFYAERVEVARVAREWRENLEAVAREIRYAFLHRVAREVKAKAI 123 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ETV ++ + A +G+G+ + + RP L RRE++R++L Sbjct: 124 LTAHTLDDQAETVLLKLLQGTA-RGLGI--------REKEGLVVRPLLAFRREELRAYLK 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239 +W EDPSN D +R +R V + + +F +R++ + Sbjct: 175 ALGEAWREDPSNQDLSRDRNYLRLKVLPLVEERFPGAKEALSRFAQVRMEEEAHLEREAR 234 Query: 240 KYLTVHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 L R + + +L L LR I P + ++ G Sbjct: 235 ARLLPDPRFFVPAYRAAPLLEAPGVLRRRALR---WILEALDLRP-EARLIALLEEALGG 290 Query: 298 KRGCVSIGRVVIDRRAN 314 K + G R+ Sbjct: 291 KVATLP-GGYTARRKGG 306 >gi|269302798|gb|ACZ32898.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pneumoniae LPCoLN] Length = 319 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 21/263 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+A+SGGSDS+ L L + F+A+ +DH R T+ Sbjct: 12 KQLDLFFASLDVKKRYLLALSGGSDSLFLFYLLKE-------RGVSFTAVHIDHGWRSTS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTA 125 E + + ++C+R + + + + L AR+ RYA + E + ++A I A Sbjct: 65 AQEAKELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLA 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV R L M + Y ++ + RP L + ++ L R Sbjct: 125 HHANDQAETVLKRLLESAHL--TNLKAMAE-RSYVEDVLLLRPLLHIPKSSLKEALDARG 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFV---------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 IS+ +DPSN D+R+ R R+R+ + ++I L L ++ +L + Sbjct: 182 ISYVQDPSNEDERYLRARMRKKLFPWLEEVFGKNITFPLLTLG-EESAELSEYLEKQAQP 240 Query: 237 LIPKYLTVHMRSIIAISQDILNI 259 + + ++ Sbjct: 241 FFSAATHQDSQGELPCPDCLIQQ 263 >gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1] gi|189035964|sp|A5ERG8|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1] Length = 358 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 32/345 (9%) Query: 3 LSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +S E+ R F + + +L +AVSGG DSM L+ + R+ G + A++VDH Sbjct: 12 ISAAEAERLF--APFADSGVLTLAVSGGPDSMALMWLAARWRATRA-GGPRLLAVTVDHG 68 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR ++ E V + +L + H + W KP G+ AAR ARY L++ A+ A+ Sbjct: 69 LRPESRREALMVKQLARQLGLTHRTLRWSGEKPAAGIPEAARIARYRLLARAAEQAGASH 128 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++TAHT DDQ ETV MR R G+ + L ++RP L + + + L Sbjct: 129 VVTAHTRDDQAETVLMRLLRGSGIAGLAAM---APVSRRDGLLLARPLLSLSKARLLATL 185 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAML 237 I++ +DP+N D F R R+R + + + +A Sbjct: 186 RSAGIAFADDPTNRDPAFTRPRLRALMPTLAAEGADPRTLATLANRARRANAAIELMADG 245 Query: 238 IPKYLTVHMR----------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS- 286 +YL + + + + + + LL + G + + ++ Sbjct: 246 AERYLALLAAGRSSKRRGGEGEMFDPRAFAALPAEIRLRLLMRAIDRVGTEGPVELGKAE 305 Query: 287 --MERVMLFLK------SGKRGCV--SIGRVVIDRRANFLWITRA 321 +ER+ L + +RG + ++ ++ + + I+ A Sbjct: 306 ALLERLDRTLAGITDGGTAERGTLKQTLAGALVSLAKDAIRISPA 350 >gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 344 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 119/307 (38%), Gaps = 19/307 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +L SGG DS L++A+H + + K A +DH LR A +++ V D Sbjct: 32 LKGKKVLAGFSGGPDSAALVLAMHYLAPSLNM---KLEAAYLDHGLRREAGEDLALVQDT 88 Query: 77 CS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 CS +L + S VS + + G+ AR RY + A+ A ++T H +D Sbjct: 89 CSQLSMKLHLGRSNVSRLAGRGRGGIEETARRLRYRYLHGVARKTGADYVLTGHHLNDLA 148 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E + MR QR G G G+ Y I RP L R+ I FL + D Sbjct: 149 EDILMRLQR-----GTGWPGLSGMRAYVPERRILRPLLMIPRKCIMDFLETAGQGYVLDA 203 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL---TVHMRSI 249 +N D F R RVR + + A+ K ++ A L ++ Sbjct: 204 TNKDKTFLRNRVRMSLVP-EFEAINPGFLKSIANIWRLGRVDADYWDHILEEARQDVQEE 262 Query: 250 IAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSI-GR 306 + D+L+ + L + + G GQ + ++ + K+G R Sbjct: 263 DLVPGDLLSGMHQAARMRLYKKTLDSLGPGQALVENIFKLDELWQSRKTGARVQFPGDKE 322 Query: 307 VVIDRRA 313 +I R Sbjct: 323 ALISREG 329 >gi|15639364|ref|NP_218813.1| hypothetical protein TP0373 [Treponema pallidum subsp. pallidum str. Nichols] gi|189025606|ref|YP_001933378.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum SS14] gi|6136519|sp|O83388|TILS_TREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226695552|sp|B2S2X0|TILS_TREPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3322651|gb|AAC65358.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189018181|gb|ACD70799.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum SS14] Length = 477 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 40/340 (11%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + R F LV P+ +LVAVSGG+DS+ LL A H + D + A++VDH LR Sbjct: 13 VHVARSFGHFLVPRKPSCLLVAVSGGADSLALLYAAHELAPD---FGVCACAVTVDHSLR 69 Query: 64 ETA-KDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 + R+V +C+R + V V G+ AAR RY + Sbjct: 70 AQEGALDARFVRALCARFSPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHV 129 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A A +++TAHT DDQ ET+ MR + A + + RP L+ Sbjct: 130 AARCGAQVVLTAHTRDDQYETLLMRLFQGAAASAL-------QGIRAARGRYVRPLLKVS 182 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R + FL R + W ED SNT ++ R R+R + L ++ Sbjct: 183 RTCVEDFLQTRGVRWREDASNTCRKYVRNRIRHELIPALDAVLAGWRSGLDKTFAGISAE 242 Query: 234 VAMLIPKYLTVHMRSIIAISQ--------------DILNIDSTLLFYLLRVSAAICGGQI 279 + + A D L + L F+LL+ + G Sbjct: 243 HSFCVAALTRWREGCSHAWEPVPRALGTRLRMPRSDFLAAEFILRFFLLQEACVRLGVSH 302 Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 +P +ER F + + + ++R ++ + Sbjct: 303 RVPRGA-LERCARF---DGVRRIHVSGLQLERAGAYVLFS 338 >gi|300691851|ref|YP_003752846.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07] gi|299078911|emb|CBJ51572.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07] Length = 474 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 132/340 (38%), Gaps = 14/340 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS L+ + D + ++ A+ V H L+ Sbjct: 24 VAACAAFVVSGGAPT-VAVALSGGRDSAA-LLHAAAAWRDVAGAPVRLVALHVHHGLQAD 81 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + V + S G+ AAREARYA + ATL++T Sbjct: 82 ADAWEVACARMAAAVGAEFHVRRVRVSADAGRGIEEAAREARYAALDALCAEAGATLLLT 141 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M + + RP+L R DI ++ Sbjct: 142 AHHLDDQAETVLLQLLRGAGLDGLSAMPMA----RQRRVTLLRPWLDVPRSDIDAYARAH 197 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++W EDPSN D R+ R +R + + H A + + + + + L Sbjct: 198 ALAWVEDPSNDDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIEEVAQADL 257 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299 + D+ + +LR A G + R +E + +L ++ Sbjct: 258 ARIAPAGALALADLATLSGPRQRAVLRAWLAGAG--LRAASSRRLEDLRTQLLSARADGA 315 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339 CV + + R WI A + P +D Sbjct: 316 LCVRLSGAHVRRYRGQAWIEVAGQPEAGPAACPIAVAQFD 355 >gi|169824693|ref|YP_001692304.1| cell cycle protein [Finegoldia magna ATCC 29328] gi|167831498|dbj|BAG08414.1| cell cycle protein [Finegoldia magna ATCC 29328] Length = 451 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 99/272 (36%), Gaps = 22/272 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+ +SGG+DS+ LL L + D F + ++H R+TA + + + Sbjct: 19 KHDKILIGLSGGADSVFLLNILIKLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + L + R RY +E K+ + I AH DDQ+E Sbjct: 76 EENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDFNKIAVAHHLDDQVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ R G L G+ N I RP L + +I ++L + +I + D + Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YQNKNIIRPLLDVSKSEILNYLDENDIDYVTDET 188 Query: 194 NTDDRFERVRVRRFVRDIDL--------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N +R ++R + ++Y + +D + +++ K + Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISDSIYRTINILKDSKEIIDDVTNFKYKKLVNQE 248 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 + ++ ++R G Sbjct: 249 NGEYFIDVNLFVREKKSVRRNIIRKLLIELNG 280 >gi|285019212|ref|YP_003376923.1| cell cycle protein [Xanthomonas albilineans GPE PC73] gi|283474430|emb|CBA16931.1| putative cell cycle protein [Xanthomonas albilineans] Length = 445 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 22/357 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 PA +L+ SGG DS LL AL R G A+ V H L A + + Sbjct: 20 PAPAPVLLGFSGGLDSTVLLHALAQQPHYRQRG---LRAVHVHHGLHPDADAWAMHCQQM 76 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + V+ + + + GL AAAR+AR A ++ + + A DDQ ET Sbjct: 77 SVALAVPLQVLRVQVPRDRGDGLEAAARQARRAAFAQVLA--HGEWLALAQHRDDQAETF 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R+ R G+ + + + RP L R + ++ Q + W +DPSN Sbjct: 135 LLRALRASGPDGLAAM---QPLSGFADGKLWRPLLTLPRSALHAYAQQHALRWIDDPSNA 191 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI------ 249 D F+R + R L + ++ A L+ + + Sbjct: 192 DPGFDRNFL-RLRVLPLLRQRWPHADAALARSAQLCAEAATLLDADDQATLNAWQYAPGT 250 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + + S +LR + G + G ++ER +L+ ++ + Sbjct: 251 ALPLPPLRALPSARRARVLRRWISDAGLPPLPAAGLAAIERTLLYPRADAAAEFAWHGAH 310 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 + L+ + T WDG + +++ + D P Sbjct: 311 VRSWREALY-----AECDPPSWPADWQTHWDGCAPLRLPDGRQLRLQATTPLGFDTP 362 >gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42] gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42] Length = 335 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 122/330 (36%), Gaps = 33/330 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S +V F L + VA+SGG+DS LL+A + + A V H Sbjct: 1 MTQSFDAAVAAFRPRLP----LAVALSGGADSTALLLACAARWPG------QVVAFHVHH 50 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119 L+ A ++ +C RL I V AAR+ARY A A Sbjct: 51 GLQAAADGFEQHCVALCERLGIPLWVRRVDARHAAGQSPEDAARQARYKAFEALALDCQA 110 Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I A DDQ+ET+ + R G+ + RP LR Sbjct: 111 QAAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWQRAGMDWCRPLLRVAGA 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 D+R++L+ R W EDP+N D+RF R R+RR + L AL +F+D + A Sbjct: 168 DVRAWLVARGERWVEDPTNADERFTRNRIRRQL----LPALQQAFPQFRDTFARSCEHAA 223 Query: 236 MLIPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + AI Q + + +LR + + P + + Sbjct: 224 QASELLQELAAADAAAIGQPPRIAALRALGRARQANVLRHWLRV--HHATTPTAAQLNEL 281 Query: 291 MLFLKS----GKRGCVSIGRVVIDRRANFL 316 + L + G R + +G + R A L Sbjct: 282 LDQLAACATRGHRIHLKVGGGYVVREAEVL 311 >gi|296328516|ref|ZP_06871035.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154325|gb|EFG95124.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 448 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQY---FFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY SE + + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNIIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLNLIPFIEERYNIKFK 217 >gi|19705273|ref|NP_602768.1| cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|61216676|sp|Q8RHN5|TILS_FUSNN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|19713236|gb|AAL94067.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 448 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQY---FFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY SE + + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNIIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLNLIPFIEERYNIKFK 217 >gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54] gi|61216493|sp|Q6AJ19|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila LSv54] Length = 471 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 36/325 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVS 74 L I+V VSGG+DS+ LL L + D ++ AI +DH LR E+ +V Sbjct: 25 LKSGDKIIVGVSGGADSIALLHILTELNLD-----LQLIAIYIDHGLRPDEIPQEISFVK 79 Query: 75 DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +S + AAR RY +E + A IM AH DD Sbjct: 80 GQAGAVGAEFESISVDVLALKNCDKLSTEDAARRLRYQAFAEARERYGAKYIMVAHNADD 139 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q+E ++R R +G LSGM N + RP L + D+ +L +R I CE Sbjct: 140 QVEEFFIRLLRGSGRRG--LSGMP-----YQNGLLLRPLLSLTKADLLLYLQERGIDHCE 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN + + R R+R + L +++ + + + K Sbjct: 193 DSSNREPCYLRNRIRLDLLPR-LEEYNPSLRRTILNTSSILESEEDFLEKSARELFNRST 251 Query: 251 AISQDILNIDSTLLFYLL---------RVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300 I+++ + L RV IC + P + +E + G Sbjct: 252 RINREGKLPKTELDCRSFSGGHQALQRRVIELICWQMDAQPSFTHIENICRLATEGTSAK 311 Query: 301 CVSIGRVVIDRRANFLWITRAVRNL 325 + +G + L + + + + Sbjct: 312 TLQLG--------SGLRVKKEISQV 328 >gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169] Length = 451 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 58/309 (18%), Positives = 111/309 (35%), Gaps = 26/309 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R+ I F + + +D +NTD + R R+R+ + L ++ ++ A Sbjct: 175 RDKISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAIENIVRSAGLLSMA 234 Query: 234 VAMLIPKYLTVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPG 283 M+ + T+ +Q D LN+ + +L +LP Sbjct: 235 STMVDQQVGTLLASLDYPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291 Query: 284 YRSMERVML 292 + + ++ Sbjct: 292 SHQLTQQVI 300 >gi|326566220|gb|EGE16372.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1] Length = 451 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHCWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228 R I F + + +D +NTD + R R+R+ + ++ A+ ++ L + Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234 Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 +V +A L + + ++ I D LN+ + +L +LP Sbjct: 235 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 290 Query: 283 GYRSMERVML 292 + + ++ Sbjct: 291 PSHQLTQQVI 300 >gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Alistipes shahii WAL 8301] Length = 447 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 29/254 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 + IL+ VSGG DSM +L + + LR + ++ V D Sbjct: 19 HDDRILLTVSGGVDSMVMLSLFTRC-------GYRVGVAHCNFQLRGAESDEDEVLVEDE 71 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + A ++ + + AAR RYA ++ T I AH DD + Sbjct: 72 AKKHGAAFYNRRFETRAEMERTGESMEMAARRLRYAWFDALSREHGYTAIAIAHHADDSI 131 Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ET ++ R +G+ G+S + RP L R++I + +Q I + ED Sbjct: 132 ETFFINLLRGTGLRGLTGISTQVGK--------VIRPLLFASRKEILEYAVQNRIPFRED 183 Query: 192 PSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 SN ++ R ++R R + + + + D ++ +N+ + + + +T Sbjct: 184 SSNRSTKYLRNKIRLGLIPRIREINPKFTSLMSRNLARLTDAQLFINHGIERIRSEAVTS 243 Query: 245 HMRSIIAISQDILN 258 I I D L+ Sbjct: 244 DT-GIDTIHLDRLD 256 >gi|83748220|ref|ZP_00945246.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551] gi|83725061|gb|EAP72213.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551] Length = 475 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 127/327 (38%), Gaps = 12/327 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS LL A + ++ A+ V H L+ Sbjct: 24 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHVHHGLQVD 81 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + + V S G+ AAREARYA + ATL++T Sbjct: 82 ADAWEVACARMAAAVDVECHVRRVCVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 141 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M + + RP+L R DI ++ Sbjct: 142 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYARTH 197 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++W +DPSN D R+ R +R + + H A + + + + + L Sbjct: 198 ALAWVDDPSNHDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 257 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301 + + D+ + +LR A G + + +L ++ C Sbjct: 258 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 317 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328 V + + R WI V P + Sbjct: 318 VRLPGAQVRRYRAQAWI--EVAGQPEV 342 >gi|300088508|ref|YP_003759030.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528241|gb|ADJ26709.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 479 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 67/373 (17%), Positives = 136/373 (36%), Gaps = 38/373 (10%) Query: 30 SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSV-- 86 +DS+ LL LH S I+F ++H LR A + +V + RL + ++ Sbjct: 36 ADSVCLLHILHKYQSALG---IEFHVAHLNHGLRGGDADADAEFVRALAERLGLEATIEK 92 Query: 87 --VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V+ ++ L AARE RY ++E A + AHT +D +ETV + R Sbjct: 93 RDVAGYRARHGLTLEEAAREVRYRFLAETA---GGDTVAVAHTRNDHVETVMLHLLRGTG 149 Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ T+ + +L I RP + R ++ ++ + + +D +N R Sbjct: 150 LSGLVGLKEASTLSHKRITSLKIIRPLICLTRAEVEAYCRASGLEYRDDATNESLTPTRN 209 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNN--------AVAMLIPKYLTVHMRSIIAISQ 254 R+R + ++ + + ++ A + + Sbjct: 210 RIRLQLLPEIRREYNPRVDEALERLSRLAGDDADFIEIRAAEAADLVVRTEGELTVIDRA 269 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRA 313 + + L +LR + A G +E ++ G + + +V Sbjct: 270 GLAGLHPALRRAVLRAALAGALGSAKDIEAGHVEDMLDIATGGAGRMIDLPQGLVFRAGY 329 Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373 ++ + +L P + V +GRY+ ++L+ +R ++ Sbjct: 330 GQAYLGKVSASL------PGTSPVIEGRYRLTVPGETLLP----GWRVIA------ELLP 373 Query: 374 QRALSSMPSKEGG 386 + A+ PS + G Sbjct: 374 RSAVGEFPSTDDG 386 >gi|307718728|ref|YP_003874260.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192] gi|306532453|gb|ADN01987.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192] Length = 472 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 25/242 (10%) Query: 6 IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E V F + V A +LVA SGG DS LL +L + R + + +DH +R Sbjct: 2 LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALLHSLFLL---RQRLNLTLKVVYLDHGIR 58 Query: 64 E--TAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114 E R+V + + + + + + ARE RYA E Sbjct: 59 PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + HT DDQ+ETV R R + L GM RP L C R Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDP--LALRGMSPVR-----DRYLRPLLSCSR 171 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ SFL ++ +S+ ED SN D ++R +R V L L + + V ++ Sbjct: 172 SEVLSFLQEQGLSYLEDSSNEKDAYDRNFLRIHV----LPVLEKRFPGWTKAVVALSEKA 227 Query: 235 AM 236 + Sbjct: 228 EL 229 >gi|167894984|ref|ZP_02482386.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 7894] gi|167919622|ref|ZP_02506713.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei BCC215] Length = 492 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNT+ R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTNTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|126439105|ref|YP_001059568.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668] gi|126218598|gb|ABN82104.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668] Length = 489 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNT+ R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTNTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|113476777|ref|YP_722838.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101] gi|110167825|gb|ABG52365.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101] Length = 344 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 21/286 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L IL+AVSGG DS+ +L +S + DH R ++ YV Sbjct: 26 KLLPKNQRILIAVSGGQDSL---CLTKLLLDLQSKWGWYLAVAHCDHKWRSDSEANANYV 82 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + ++ V + A AR+ RY ++S+ A N I+T HT D+ E Sbjct: 83 KKIAINWQLPSYVETADKIYKS---EAEARKWRYQVLSKIALEFNFQYIVTGHTASDRAE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ R +G+ ++ + + RP L R +F ++ I ED + Sbjct: 140 TLLYNLIRGSGTEGLQALTWQRPLIENFLPLLVRPLLEITRTQTSNFCQEQKIRIWEDST 199 Query: 194 NTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 N D + R R+R + I AL + N L+ + + Sbjct: 200 NQDLHYARNRIRLELFPILRQFNPQVELALAKTAEILSAEVKYFENETEQLLERVTKIDT 259 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 + ++ +S + Y + + Q+ L R + R +L Sbjct: 260 NNF-----NLSQFESQPVKYFINRLVLL---QVPLALQRRVMRHIL 297 >gi|284036229|ref|YP_003386159.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74] gi|283815522|gb|ADB37360.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74] Length = 446 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 115/318 (36%), Gaps = 34/318 (10%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 L P +L+AVSGG DSM + + FS V+ +R + + + Sbjct: 14 QLFKPTDRVLLAVSGGIDSMVMAELFYR-------SGQPFSIAHVNFSMRGAASGADAVF 66 Query: 73 VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V + + + + + + + AARE RYA S+ + T + TAH Sbjct: 67 VENKANGYGVPFHSIRFDTKAVAYERGISIQMAARELRYAWFSQLLSEFSYTCLATAHHK 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D LET+ + R G+ + + RP L R+ + ++ + ++ + Sbjct: 127 NDVLETLLLNLTRGTGLAGLH-------GILANQNQVVRPLLFATRDQVVAYAIANSLEY 179 Query: 189 CEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 ED SN D ++ R R+R V + L +++ + + + + Sbjct: 180 REDSSNADVKYARNRIRHHVVPVLAELNPGLWQTLPRTVERLRAAETLMRAELDRSWQEV 239 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 V RSI+ + D L S LLF L A S+ ++ L Sbjct: 240 AEVGGRSIL-LPHDKLLAQSELLFRL----AEWVKPFGFTSDQASL--LVACLTQPVGQI 292 Query: 302 VSIGRVVIDRRANFLWIT 319 I N L I Sbjct: 293 FRSATHRITHERNGLLIE 310 >gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 326 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 124/332 (37%), Gaps = 33/332 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S +++R F +L + VA SGG+DS LL+A + AI V+H Sbjct: 1 MTQSFDQAMRAFEPALP----LGVAYSGGADSSALLVACARQWPG------QVVAIHVNH 50 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119 L+ A D + VCSRL I V + P AAR ARY A+ A Sbjct: 51 GLQAAAADFEAHCRSVCSRLGIPLHVEAVHAHAVPGQSPEDAARIARYKAFDALAQMECA 110 Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I A DDQ+ET+ + R GLSGM + RP L+ + Sbjct: 111 GVAIKSIAIAQHADDQVETMLLALGRGAGL--AGLSGMPA-QWQRGKVHFFRPLLQVAGD 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 ++ +L+ N W DP+N D R+ R +R + L AL +F + + A Sbjct: 168 ALKRWLVANNEPWVSDPTNADHRYTRNHIRSEL----LPALQRVFPQFLETFARSARHAA 223 Query: 236 MLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGY-- 284 + A+ ++ + +LR + G I Sbjct: 224 EAEALLAEMADEDWRAVEREAPGRPNIRSLQALSPARQSNVLRRWLKLGHGVIPQASQLL 283 Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 ++V G R + +G + RR L Sbjct: 284 ELRKQVQACTTRGHRIHLKVGNGFVTRRGATL 315 >gi|207743488|ref|YP_002259880.1| hypothetical protein RSIPO_01666 [Ralstonia solanacearum IPO1609] gi|206594886|emb|CAQ61813.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 462 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 127/327 (38%), Gaps = 12/327 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS LL A + ++ A+ V H L+ Sbjct: 11 VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHVHHGLQVD 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + + V S G+ AAREARYA + ATL++T Sbjct: 69 ADAWEVACARMAAAVDVECHVRRVCVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M + + RP+L R DI ++ Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYARTH 184 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++W +DPSN D R+ R +R + + H A + + + + + L Sbjct: 185 ALAWVDDPSNHDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 244 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301 + + D+ + +LR A G + + +L ++ C Sbjct: 245 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 304 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328 V + + R WI V P + Sbjct: 305 VRLPGAQVRRYRAQAWI--EVAGQPEV 329 >gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius LAA1] gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius LAA1] Length = 277 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 3/202 (1%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + FF + + AH ++ VSGG DSM LL + FS + V H LRETA Sbjct: 12 ISFFQQHRLETAHAVIGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + +V C I + K + + AA +I+ AH Sbjct: 72 DAEFVEQYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALAERARAKGGVILVAHHA 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+LET MR R G+G + + ++RP + + +I + + Sbjct: 132 QDELETFIMRLLRGAGPGGLGAMRPEAEM---NGVRVARPLIAVEKGEIDRYAEAHGVPH 188 Query: 189 CEDPSNTDDRFERVRVRRFVRD 210 ED +N D RF R RVR+ V Sbjct: 189 VEDETNEDPRFFRNRVRQVVIP 210 >gi|219849533|ref|YP_002463966.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485] gi|219543792|gb|ACL25530.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485] Length = 474 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 80/377 (21%), Positives = 140/377 (37%), Gaps = 58/377 (15%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78 A +LVAVSGGSDS+ + G + A +DH LR + + +V+ + + Sbjct: 19 ARLLVAVSGGSDSLA--LLHMLAALYAEGGPVPIVA-HLDHGLRGAESAADAAFVTSLAA 75 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + + T A AR RY ++ A ++ AH DDQ ETV M Sbjct: 76 EWGLRAVIEQAHLPPGTTS--ATARIVRYTFLARTAIAEGVDAVLVAHQADDQAETVLMH 133 Query: 139 SQRDYAEKGMGLSGMCDTILYDL--------------NLWISRPFLRCRREDIRSFLLQR 184 R +GL GM + +++ + RP L RR + + Sbjct: 134 LLRGAGP--VGLRGMRERVVWSEWAAPAIAAGVVPSSGPPLLRPLLTIRRTTLADYCKMH 191 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVK----VNNAVAML 237 ++ +DP+N + + R R+R + + +Y + + + + + +A+ Sbjct: 192 ALTPRDDPTNRNLHYLRARIRHQLLPQLATENPQIYAALNRTARICAEDYDYIQQMLAVQ 251 Query: 238 IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 PK + R +IA + L + L Y LR + A G + P ++ + LK Sbjct: 252 WPKLIAERRRGLIAFDRAALRVLHPALQRYALRRAVAELGAEE--PSLAQIDAALQMLKG 309 Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356 R +R P L+L ++ TV L D+ + P Sbjct: 310 QAG--------------------RQMRLTPQLVLTCDQLTV------TVALPDAEPPVAP 343 Query: 357 QSYRKADVPSGIPPIIA 373 Q Y +P+ + Sbjct: 344 QVYEPVSLPTSGKVSLP 360 >gi|111115622|ref|YP_710240.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo] gi|123046902|sp|Q0SM64|TILS_BORAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|110890896|gb|ABH02064.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo] Length = 440 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 114/293 (38%), Gaps = 25/293 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R + Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIIAFYFAHFIRPDNEQN 67 Query: 69 -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++ + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLA-------GIPSVNKNIIRPLLEVSRPEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI D +N+ + + R +VR + K + + V Sbjct: 181 SLNNIRVFIDSTNSQNLYLRNKVRNNLLPSIEKIFKGYEKCLKRISEFSKEFVNYFEKDE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + S D+ L+ L+F L+ G ++ Y+++ + Sbjct: 241 FFPVEKGKYYYSFDLKAFLDFPKYLVFRLI-FKILNSEGIVAKISYKALNELF 292 >gi|303234983|ref|ZP_07321607.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4] gi|302493838|gb|EFL53620.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4] Length = 451 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 22/290 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+ +SGG+DS+ LL L + D F + ++H R+TA + + + Sbjct: 19 KHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + L + R RY +E K+ + I AH DDQ+E Sbjct: 76 EENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDLNKIAVAHHLDDQVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ R G L G+ N I RP L + +I ++L + +I + D + Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YQNKNIIRPLLDVSKSEILNYLDENDIDYVTDET 188 Query: 194 NTDDRFERVRVRRFVRDIDL--------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N +R ++R + ++Y + +D + +++ K + Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISDSIYRTINILKDSKEIIDDVTNFKYKKLVNQE 248 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 ++ ++R G ++ ++ L Sbjct: 249 NGEYFIDVNLFEREKKSVKRNIIRKLLIELNGSNQDIRMVYIDDIIELLD 298 >gi|302342198|ref|YP_003806727.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075] gi|301638811|gb|ADK84133.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075] Length = 466 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 145/375 (38%), Gaps = 28/375 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + P ++ AVSGG+DS+ +L L S+R + + VDH LR + + + Sbjct: 2 AKPWPGPGTLVAAVSGGADSVAMLRLLAEQASERGW---RLVVGHVDHGLRADSAVDAAF 58 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V+D+ L + VV + AAR AR + A+ ++A + AHT DDQ Sbjct: 59 VADLAGALGLECRVVRVVARQAGLSPEDAARRARRQALLALAEELDAVAVALAHTIDDQA 118 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV R G+ + + RP L R ++R +L W EDP Sbjct: 119 ETVLARLLTGAGPGGLAAM-------RPRSGPLWRPLLAVRGRELRDYLAALGQPWREDP 171 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM----LIPKYLTVHMRS 248 SN D ++R R+R V + + + + + L+ L H R Sbjct: 172 SNADRAYQRNRLRHAVLPLCRQLINPRADEALARLAGLLADEEDYWRGLLDDALAAHGRR 231 Query: 249 IIAISQ----DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSMERVMLFLKSGKRGCV 302 A +L L ++R A + GGQ L + + +L + +GK + Sbjct: 232 EGASLCLSLGWLLAQPPFLRRRMMRHIAGRLLGGGQHLLFDHVAGLERLLTMAAGKSLTL 291 Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI--QIGPQSYR 360 G + R L + V + P L + + + D L +L+ ++ P + Sbjct: 292 PFG-LRAWREHEHLRLAPDV-DPPPLRVRLDGPGLVD----LPALGTALLAREVAPGATL 345 Query: 361 KADVPSGIPPIIAQR 375 +A P+ R Sbjct: 346 RARGGRAWLPLEDVR 360 >gi|71064744|ref|YP_263471.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4] gi|71037729|gb|AAZ18037.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4] Length = 525 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 120/321 (37%), Gaps = 29/321 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 ++ I +A SGG DS+ L + + + V+H L+ + ++V++ Sbjct: 38 LHGRRIWLACSGGRDSLALAALCVQLYQQSRLPFLP-QLLHVNHGLQADSDIWAQHVAEW 96 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R +I +++ + + AAR+ARY ++ + +++ AH DDQ ETV Sbjct: 97 AKRQKIPCTILQAQVNGHD---EQAARQARYDVMRT--QLNQDDVLLLAHHADDQAETVL 151 Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR + G+ G+ + + RP+L +R I ++ + +S+ +DP+N Sbjct: 152 MRLVQGAGLNGLTGMQPWRVQTQGVHRIVLWRPWLTIQRASISTYAQRLKLSYIDDPTND 211 Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY----LTV 244 R +RR + + + + + D ++ V+ + + + L + Sbjct: 212 GGDNVRSGLRRDIMPVLAKYNPNVIDNIARSAQLLSDAQLIVSAQASQDMQQTAIASLQL 271 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME----RVMLFLKSGKRG 300 + ++ + LL A LP + + R+ + Sbjct: 272 SSAQRVLDINEVKQLPLYRQRQLLHYWLA---QDEPLPPAKQLVDDVWRLSQRHDHDHQT 328 Query: 301 CVSIGR----VVIDRRANFLW 317 + I R L+ Sbjct: 329 ALFWQGRKQSYTIRRYREQLY 349 >gi|282600859|ref|ZP_06257767.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176] gi|282571163|gb|EFB76698.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176] Length = 464 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 126/324 (38%), Gaps = 36/324 (11%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E++ + R ++ A SGG+DSM L +L R +I+ A V+H +R Sbjct: 14 ETLLAYCRQQGLFKSGDRVIAACSGGADSMA---LLLFLLRRRRDLEIEVLATHVNHGIR 70 Query: 64 E-TAKDEVRYVSDVCSRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 A + +V+ C + + + V PQ AR RY + A A Sbjct: 71 GVNAIADANFVTAFCRKNGVELFLYDAVKEGVQIPQQPSEEWARGLRYGWFDQLAVQEEA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I TAHT DQ+ET+ R R G G+ GM + + RP L R + + Sbjct: 131 -FIATAHTMSDQVETILFRMAR-----GTGVHGMAG--IPPRRGYYIRPCLCLTRGETEA 182 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + ++ +D +N D + R R+R + AL + ++ + L Sbjct: 183 YCTALGQNYVQDETNAQDTYARNRIRHD----AIPALQYANPAAEVAIARLCRQMRDL-D 237 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGK 298 ++LT +++ ++ +LR + P ++ ++ ++ + Sbjct: 238 QWLTGEAAALL----QAATVEKGYDISVLRKA--------EGPVLDAALHSLISPVRDAE 285 Query: 299 RGCVSIGRVVIDRRANFLWITRAV 322 +++ R ++ R L +T V Sbjct: 286 EKYITLLRFLLQRGEGALQLTPEV 309 >gi|284043133|ref|YP_003393473.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684] gi|283947354|gb|ADB50098.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684] Length = 455 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 24/287 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++V +SGG DS+ LL + G SA+ V++ LR+ A D+ R+ + Sbjct: 16 LAAGGPVVVLLSGGRDSVCLLDVAVRIA-----GAPAVSAVHVNYGLRDDADDDERHCAQ 70 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLET 134 +C RL +A +V L A AR+ RYA ++ A T+ I T HT DQ+ET Sbjct: 71 LCERLGVALAVERPSRPAGSGNLQAWARDVRYAAAAQRALTLGPGAAIATGHTASDQVET 130 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + R + L GM + + RP L RE+ ++ R + W +D +N Sbjct: 131 ILYRLA--SSPSRRALLGM-----RPRDGRLVRPLLGLTREETTAYCEARGLPWRDDATN 183 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + ++ R R+R AL +++ +A L+ V + +++A Sbjct: 184 EEGKYARNRLR--------LALIPALREAHPAAEANVLRLAELLRDEADV-LDALVAEQL 234 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 D R + + Q P R + V+ L G G Sbjct: 235 DGRGAPGAGAEREARATIPLARLQALAPALRRL--VVQRLADGAAGR 279 >gi|216263345|ref|ZP_03435340.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1] gi|215980189|gb|EEC21010.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1] Length = 440 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 114/293 (38%), Gaps = 25/293 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +F+ ++ + ++VA SGG+DS LL+ L LS+ A H +R + Sbjct: 14 KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIIAFYFAHFIRPDNEQN 67 Query: 69 -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C IA + + ++ + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + +N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------VGIPSVNKNIIRPLLEVSRPEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NI D +N+ + + R +VR + K + + V Sbjct: 181 SLNNIRVFIDSTNSQNLYLRNKVRNNLLPSIEKIFKGYEKCLKRISEFSKEFVNYFEKDE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + S D+ L+ L+F L+ G ++ Y+++ + Sbjct: 241 FFPVEKGKYYYSFDLKAFLDFPKYLVFRLI-FKILNSEGIVAKISYKALNELF 292 >gi|92112713|ref|YP_572641.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter salexigens DSM 3043] gi|91795803|gb|ABE57942.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter salexigens DSM 3043] Length = 430 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 126/333 (37%), Gaps = 22/333 (6%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++ P + VA+SGG DS LL + A+ V+H L++ A D + Sbjct: 20 AMTSPGRCVWVALSGGLDSSLLLTLAVAACRRHPRP---LYAVHVNHGLQDAAADFEAHA 76 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C RL + V + + GL A AR+AR A + + ++ A DDQ E Sbjct: 77 RWLCGRLGVPLFVERARVERGARGLEAHARDARLAAFA--RRVAPGETLLLAQHADDQAE 134 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R +GM + M + + + RP+L R + R + W +DPS Sbjct: 135 TLLLAGLRGSGLRGM--AAMPERREWQGRVM-VRPWLSVTRAALAREAEARGLRWIDDPS 191 Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D+RF+R +RR V + + + + + + L + L Sbjct: 192 NADERFDRNYLRRSVMPALASRWPEAATSLSRTAEQLGESDALLEELAGETLQALGGDAA 251 Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRV 307 + D+L + L+R + + P +E ++ L + + V Sbjct: 252 CLPVADLLALSRPRQRLLVRHACRQLS--LPTPPRARLESLLEQLEARGDAQIHVDWPGG 309 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340 R L + P + + VWDG Sbjct: 310 EARRWQGHLHLL-----APREPVDVDWQAVWDG 337 >gi|257093683|ref|YP_003167324.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046207|gb|ACV35395.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 468 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 124/335 (37%), Gaps = 17/335 (5%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + V +SGG DS+ LL AL + G +AI VDH L A Sbjct: 28 FLAARLAPGERLCVGLSGGRDSVVLLHALDGLRVRGLVGA--LAAIHVDHGLSANAGTWA 85 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + ++ C +L + +V + + G+ AAAR AR+ + + A + AH D Sbjct: 86 GFCTEFCRQLGVPLDIVHVEVPRDDGEGIEAAARRARHRVFAGCC----ADWLALAHHQD 141 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV R R G +GM + RP L R I + + ++ W Sbjct: 142 DQAETVLFRLLRGAGVAGA--AGMPAERSQAGGPRLIRPLLDVPRTLIAGYAAENSLVWV 199 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-----IPKYLTV 244 ED SN D R+ R +R+ V A + A A+L + V Sbjct: 200 EDESNADCRYRRSHLRQAVLPRIEEAFPAAARTLARAAGHFAEAAALLDELAQADRATVV 259 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVS 303 I + + + LLR + G + + R + + S + C++ Sbjct: 260 AAGGRIDLLR-FNALPPARARNLLRNELSAAGWRAPEARWLDEALRQLATVGSDSQTCIA 318 Query: 304 IGRVVIDRRANFLWITRAVRNLPT-LILYPEETTV 337 ++ L++ LP I + E + Sbjct: 319 TPDGEVNVYRRQLYVCARRPPLPAGAIFWLGEARL 353 >gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A] gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A] Length = 337 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 6/275 (2%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +S E+ F A +++AVSGG DSM L+ S + G A++VDH Sbjct: 1 MPISAAEAKLLFADWKGERA-LVLAVSGGPDSMALMWLAARWRSAMTRGP-DLIAVTVDH 58 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E R V ++ + L + H + W +KP++GL AAAR ARY L++ A+ A+ Sbjct: 59 GLRRGSAREARDVKNLATSLGVTHRTLRWSGAKPESGLPAAARAARYRLLARTARANGAS 118 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+TAHT DDQ ETV MR R GLS M + D ++RPFL + + + Sbjct: 119 HILTAHTRDDQAETVLMRISRGSGI--AGLSAMARETMRD-GFILARPFLNVPKSRLIAT 175 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP 239 L + I + EDP+N D F R R+R + + + + + + N A+ +L+ Sbjct: 176 LKKAKIDYVEDPTNRDLNFTRPRLRALMPALAEEGCDARNLARLASRLARANIALELLVD 235 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 A L ++V + Sbjct: 236 GAERYLAVQDGAERPGFRTEAFAALSEEIKVRLLL 270 >gi|289450034|ref|YP_003475216.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184581|gb|ADC91006.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 483 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 34/324 (10%) Query: 1 MFLSPIESVRFFVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 + LSP+ + + R L +++VA SGG+DS+ LL LH + + K K Sbjct: 8 LVLSPL-AYSLYKRGLAENWWALMDNLVVACSGGADSLALLYVLHEIST---VVKFKLEV 63 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---PQTGL----------MAAA 102 I +H LR A +E V + L++ ++ W P + A+ Sbjct: 64 IHFNHGLRLEAAEEAAAVETIARSLQLPFTLGVWDRGNCATPSNSVGSNDFFDGISENAS 123 Query: 103 REARYALISEHAKTINAT---LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 R+ARYA + A+ I AH DDQ ETV+ R R G G++G+ + Sbjct: 124 RQARYAFFKHYLAENCASERSYIALAHHLDDQAETVFFRLMR-----GCGINGLQGMRNF 178 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + RPFL+ + ++S+L+ NI+W ED SN+D++F R +R + + Sbjct: 179 --SGRYFRPFLQTPQAKLKSYLISHNIAWSEDASNSDEKFTRNYLRHSLLPLLSDKFGKN 236 Query: 220 MK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 K ++ A L + + +L + L + + Sbjct: 237 TKVHLANIAAAAAEAEDFLEDSAQSYLPNYGEPLDCHLLKDKAPALIKTVIRLFYVKNHP 296 Query: 279 ISLP-GYRSMERVMLFLKSGKRGC 301 L Y + ++ F+ G+ Sbjct: 297 TGLDINYAQLTKLADFILQGENNR 320 >gi|325849662|ref|ZP_08170865.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480003|gb|EGC83081.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 463 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 28/303 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +E R + I+V SGG DS L+ L+ + + F KI ++H Sbjct: 11 FKNTVEKHRLIEEN----DTIIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHM 63 Query: 62 LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R+ A D+ V + +L ++H + + + A R RY + K Sbjct: 64 HRQDAIDDENLVIETGKKLSLKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKNY 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I AH DDQ ETV MR R G+ N I RP + ++ I Sbjct: 124 KNAKIAVAHNMDDQAETVLMRIIRGSGLDGLKAMDYK-------NGHIIRPIMDFKKSQI 176 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 FL I + D +N + R ++R + + + KK +V+ + + Sbjct: 177 LKFLDYNKIDYHIDYTNLQRDYTRNKIRLDIIP-QIEKINPNFKKSLVNLSEVSKSDYEI 235 Query: 238 IPKYLTVHMRSII------AISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + I+ +S D + N+ L L+R + + G I ++E Sbjct: 236 LKDIEDDIFEKILVKKVKNKLSFDKIRFENLSDPLKMRLIRRAIFVLYGNIKDFSKINIE 295 Query: 289 RVM 291 ++ Sbjct: 296 ELL 298 >gi|167816493|ref|ZP_02448173.1| putative cell cycle protein [Burkholderia pseudomallei 91] Length = 417 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|237742841|ref|ZP_04573322.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13] gi|229430489|gb|EEO40701.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13] Length = 446 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + L RE RY SE K I A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKIEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217 >gi|42560602|ref|NP_975053.1| hypothetical protein MSC_0042 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|61216536|sp|Q6MUI9|TILS_MYCMS RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|42492098|emb|CAE76695.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320504|gb|ADK69147.1| tRNA(Ile)-lysidine synthetase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 401 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 111/251 (44%), Gaps = 14/251 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+AVSGG DS+ LL + ++ V++ R + ++ V+++C + Sbjct: 10 KKYLIAVSGGPDSVFLLCNIVKLVDPN-----DLVVCHVNYNFRSDSNNDQMIVTNLCKQ 64 Query: 80 LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 L + +++ + + AR RY + A ++ AH +D +ET + Sbjct: 65 LNLKLEILNINKDYSLLKQNFESWARAQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLL 124 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + QR+ GL + + +L + RP L ++ I ++L IS+ D +N+D Sbjct: 125 QLQRNNLVDYYGL----KPVSHYKDLVVYRPLLDIKKSQILNYLNTNKISYAVDSTNSDI 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 +++R ++R + + + + ++ K + + V + + + + +++++ Sbjct: 181 KYQRNKIRATLNENNFTKILDQINKANNNLNSIKKIVDNYLKNNIINN---ELNLTKELF 237 Query: 258 NIDSTLLFYLL 268 +D T + ++ Sbjct: 238 LLDQTCIQRII 248 >gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4] gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4] Length = 307 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 117/314 (37%), Gaps = 19/314 (6%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 P+ + + SL P +L +SGG DS+ LL +L + H R+ Sbjct: 7 PLNPFKEALESL--PDAVLCGISGGVDSIVLLHSLVETGKRP-------IVLHFQHGWRQ 57 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + V + L + + K+ + A AR RY A+ N ++ Sbjct: 58 DEESDAKLVEETAKELGVEF--LKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVL 115 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ+ET M+ R +G G+ D I L + RP L + DI F QR Sbjct: 116 AHHADDQVETFLMQLIRGTGSRGWGM----DRITTLGKLVVYRPLLDFWKSDIIRFAQQR 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 N W ED +N + R R+R+ + +K+ +V + + Sbjct: 172 NFRWREDETNENTHLLRNRIRKELIPFLESRFSRSIKRSLWKCCEVLREEKKWLATLVQE 231 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGC-V 302 S D+ N ++ + G + +E + L K GK+ C + Sbjct: 232 FSCSPSLRLADLENTPIGKQRLIISLWLKKRGVAD--ISFEDIESIRSLLEKPGKKKCNL 289 Query: 303 SIGRVVIDRRANFL 316 S VI R L Sbjct: 290 SKKSAVILRNGEVL 303 >gi|326568391|gb|EGE18471.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7] Length = 451 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 26/309 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R+ I F + + +D +NTD + R R+R+ + L ++ ++ A Sbjct: 175 RDKISQFAKAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAVENIVRSAGLLSMA 234 Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283 M+ + T+ H + + Q D LN+ + +L +LP Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291 Query: 284 YRSMERVML 292 + + ++ Sbjct: 292 SHQLTQQVI 300 >gi|224534142|ref|ZP_03674722.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S] gi|224514567|gb|EEF84881.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S] Length = 440 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 62/292 (21%), Positives = 112/292 (38%), Gaps = 25/292 (8%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKD 68 F+ ++ + + ++VA SGG+DS LL+ L L + A H +R Sbjct: 15 FYKKNSLNKSRVIVAFSGGTDSTTLLLNLKYYLRN------NIVAFYFAHFIRADNEQNQ 68 Query: 69 EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E+ +V + C IA + + + + + AR+ RY + K +A I Sbjct: 69 EIEHVKEFCDFYNIALQIKKCDIDIKSEAIRLGVSIEELARKCRYNALENALKENDANYI 128 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ+ET+ MR + G+ + +N I RP L R +I +FL Sbjct: 129 ALAHNENDQIETIIMRFFQGSFLDGLA-------GIPSVNGNIIRPLLEVSRLEIENFLS 181 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239 NI D +N+ + + R RVR + +K+ + + N Sbjct: 182 LNNIRVFVDSTNSQNLYLRNRVRNNLLPSIGKVFKGYEKCLKRISEFSKEFANYFEKDEF 241 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + L+ L+F L+ G ++ Y+++ V Sbjct: 242 FPVEKGKYYYSFDIKTFLDFPKYLVFRLI-FKILNSEGIVTKISYKALNEVF 292 >gi|167830049|ref|ZP_02461520.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 9] Length = 424 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DDQ ETV ++ R G+ ++ RP L R + + Q Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242 + W +D SNTD R+ R +R V L AL F+D + A L+ Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244 Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295 + +R++ +L+ D+ + LLR G S M + + + Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304 Query: 296 SGKRGCVSIGRVVIDRRAN 314 V + + Sbjct: 305 DAHALRVDHAGWRLRLYRD 323 >gi|186685996|ref|YP_001869192.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] gi|186468448|gb|ACC84249.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102] Length = 331 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 117/331 (35%), Gaps = 28/331 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I S F R+ +L+AVSGG DS+ + +L +S DH R Sbjct: 12 RTIRSRHLFERN----QRLLIAVSGGQDSL---CLIKLLLDLKSKWGWDLGIAHCDHRWR 64 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ +V ++ I+ + + AAAR+ RY +S A+ N I+ Sbjct: 65 SDSQANANHVENLAETWGISFY---LETANEPINSEAAARDWRYQALSAIAQANNYQYIV 121 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T HT D+ ET+ R G L + + + RP L R F + Sbjct: 122 TGHTASDRAETLLYNLIRGTGADG--LQALTWQRPLTTGIMLVRPLLEVTRIQTEQFCQE 179 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVA 235 + ED +N D ++ R R+R+ + AL + Q + A Sbjct: 180 FKLPIWEDSTNQDLQYARNRIRQELIPYLRENFNPQVESALAQTAELLQAEVEYLEKAAQ 239 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL----FYLLRVSAAICGGQI--SLPGYRSMER 289 L K L + I L ++ +L L R QI + +E+ Sbjct: 240 QLREKALGIGDEEDSLIPLLPLRLNRRVLQKAPLALQRRVMRQVLQQILTDAASFEHIEK 299 Query: 290 VMLFLKSGKRGCV--SIGRVVIDRRANFLWI 318 + + + R G + +++++ Sbjct: 300 LTALITAPNRSQTDPFPGGAIAQVEGDWIYL 330 >gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1] gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1] Length = 342 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 15/314 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F+ PA L+AVSGG DS L+ A D F +VDH LR + Sbjct: 15 ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDL------FRVATVDHALRPGSA 66 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 DE R V + + L + H++++W + + + A+AR ARY L+++HA I A LI+TAHT Sbjct: 67 DEARAVGRLATELGLIHTILTWDAPRHGSRIQASARGARYRLLTDHAARIGAGLILTAHT 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV MR GL+GM + + + + RPFL + D+ ++ + Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184 Query: 188 WCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + DPSNTD+RF R R+RR + ++ L + + +++ + Sbjct: 185 FLRDPSNTDERFTRARLRRLLPLLAEEGLNAARLARLAVRAGRDDAALRRQAEVVLAEIT 244 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 + Q + ++ ++ + P + +ER+ + + Sbjct: 245 RTDEGGLRLDGQGLRREPCAIVLRVVDAALDTVAPTHEAPVPKRLERLEALVLDALLPAL 304 Query: 303 SIGRVVIDRRANFL 316 + GR + L Sbjct: 305 AEGRALRRTLRGVL 318 >gi|221068471|ref|ZP_03544576.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1] gi|220713494|gb|EED68862.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1] Length = 334 Score = 179 bits (455), Expect = 7e-43, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 123/323 (38%), Gaps = 29/323 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 V V + + VA SGG+DS LL+A H+ + AI V H L+ A Sbjct: 16 RVDVAVAAFNPALPLAVAFSGGADSSALLLACHARWPG------QVRAIHVHHGLQSAAD 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----- 121 ++ +C+R IA V + Q AAR+ RYA + + A Sbjct: 70 GFQQHCEQLCARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAAGQPWLAADGAPL 129 Query: 122 -----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A DDQ+ET+ + R G+ L RP L + Sbjct: 130 DAVRSMALAQHADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLQWFRPLLAVPGQA 186 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 +R +L R +SW EDP+NTD + R R+R + + L ++ + + + Sbjct: 187 LRDWLRLRGLSWVEDPTNTDQGYTRNRIRAQLLPV-LEQVFPQFRSTFARSCAHCAQASE 245 Query: 237 LIPKYLTVHMR--SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 L+ + ++ + + + + L +LR + + P + ++M + Sbjct: 246 LLDEQAAADLQMVGLPPAIKALQRLSEARLGNVLRYWLRVA--HDTTPTAAQLAQLMAQV 303 Query: 295 ----KSGKRGCVSIGRVVIDRRA 313 G + +GR ++R+ Sbjct: 304 GVCTTRGHHIHIKVGRGFVERQG 326 >gi|225181433|ref|ZP_03734876.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1] gi|225167831|gb|EEG76639.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1] Length = 474 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 29/353 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I+ + F+ ++VAVSGG DS+ LL L + + I + H L Sbjct: 6 LRTIQKNQLFL----PGQKVVVAVSGGPDSLMLLHVLWELSAKLG---ITLHVAHIHHGL 58 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTIN 118 R + E V + L + SV + K T L A AR+ RY + A + Sbjct: 59 RAESDQEAVAVKKMALGLGLPVSVSRVNVGNRRQKTGTSLQATARQVRYGALERIAHRVG 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A I TAH DD +ET+ + GL G + L + RP R++I Sbjct: 119 AACIATAHHRDDLVETL--LLRLLSGSGLDGLKGFPMQRVLPSGLSVVRPLYDVTRKEIE 176 Query: 179 SFLLQRNISWCEDPSNTDDRFERV--------RVRRFVRDIDLHALYLKMKKFQDLRVKV 230 ++ + DP+N + R + R +L + Sbjct: 177 AYCRTYKLKPLHDPTNRKADYLRNRVRLRLLPFLEREFGSHVRQSLARVAALLGQDSTLL 236 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + + R+ + ++ + L+ + L ++R + G + PG +E+ Sbjct: 237 TEVTSDAFARVCETAGRNSVVLNINKLHALPPALQARVVRSALWQSG--VKRPGRLHVEQ 294 Query: 290 VM-LFLKSGKRGCVSIGRVVID-RRANFLWITRAVRNLP---TLILYPEETTV 337 V+ L K +++ V R+ + L I R ++ P +T + Sbjct: 295 VVALTKKESPSAQLTLPDEVRAWRQYHRLCIGRPEAEPQIEGIEVVVPGQTCL 347 >gi|320528645|ref|ZP_08029798.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204] gi|320131011|gb|EFW23588.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204] Length = 401 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 20/225 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 LVAVS G DSM LL I + V++ R A +E Y+ C + Sbjct: 6 GKWLVAVSSGPDSMALLQMCID-------AGIDCAVAHVNYHHRPEADEEENYIRSFCVK 58 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I V + + AAAR+ RY E + ++ H DD LET M+ Sbjct: 59 KGIPIFVHNEPFTYTG-NFEAAARDLRYRFFVEIVRYEGFQGVLIGHHQDDLLETYIMQE 117 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 ++ + GL + + RP L +E++ + + + + D +N D + Sbjct: 118 SKNIVPEYYGL----REEMLMHGVLFKRPLLHVAKEELVRYCKEHQLHYYIDATNLSDEY 173 Query: 200 ERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 R ++R + R+ L + + Q+ R +V + Sbjct: 174 TRNQIRHQIVEPMTSFERNAYLREIKQRNAVLQERRCRVKTYIRQ 218 >gi|295104817|emb|CBL02361.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 478 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 110/318 (34%), Gaps = 27/318 (8%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R + P + AVSGG+DSM L + + SA V+H LR + D Sbjct: 14 IREGLLQPGTPLQLAAAVSGGADSMA---LLLLLRQLQPRFGYTLSACHVNHGLRGQSAD 70 Query: 69 -EVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +V C+RL + V P AR RY + + I TA Sbjct: 71 RDEAFVRAECARLGVPLRVFHAAELTPPPAHAGEDWARRLRYTAFVQL-QGQGIDAIATA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT +DQ ET+ +R R G G + RP L R + + Sbjct: 130 HTANDQAETLLLRLARGTGLHGAG-------GIRPRRGCYLRPLLCLSRAETEAVCRAAG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 +W D +N D + R R+R L AL + A Sbjct: 183 QTWVTDETNDTDAYARNRLRHS----ALPALKSTNAAAVQNLARFCEKAARADAYLAAGA 238 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 + + A + + LL + AA L ++ ++ ++ + V + Sbjct: 239 AKLLAAARL----PGAEPAWQLLPLQAA-----DPLLLETALHSLVAPVRDAEEKYVQLL 289 Query: 306 RVVIDRRANFLWITRAVR 323 V+ + + + +T VR Sbjct: 290 CAVVRQGSGAVQLTGQVR 307 >gi|261749297|ref|YP_003256982.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497389|gb|ACX83839.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 440 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 119/330 (36%), Gaps = 37/330 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I ++ F SLV I VAVSGG DSM + + + Sbjct: 10 FLEKI--IKSF--SLVEKKKICVAVSGGLDSM------VLLNLLLLVPNLTLGVAHCNFT 59 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116 LR+ + ++ +V + C++ I V + + + + AAR+ RY + Sbjct: 60 LRDKESNEDENFVKNFCAKKHILCHVKRFNTFDFSKRNKFSIQMAARKLRYDWFENLLEK 119 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H D +ET ++ R KG+ + N RP +E+ Sbjct: 120 HSYDHMALGHHLSDSVETFFINIMRGTGLKGL-------LGIPRENRKFIRPLSSFTKEE 172 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNN 232 I + + ++W D SN ++++ R ++R + + Y KK + + + Sbjct: 173 ILHYAKMKKVNWRLDHSNQENKYLRNKIR-LITSTFSDSFYKGFKKSIKYLHQENLVIES 231 Query: 233 AVAMLIPKYLTVHMRS--IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 V + K + I + L FYL ++ G+ ++E + Sbjct: 232 EVTKINKKITLEKKENPFFWKIECKKIKELQPLSFYLFKLF--------FPYGFSNIEDL 283 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 L + + + I + N + + Sbjct: 284 KNLLYAQSGKQLFSKKYRIIKNRNHWILVK 313 >gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E] Length = 451 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 26/309 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 M + S+ L PAH + +A SGG DS+ L A + ++ + + V Sbjct: 1 MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 H + ++ V ++ +K AR+ARY Sbjct: 60 HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173 ++M AH +DQ ETV MR +G+ + + + + RP+L+ Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R+ I F + + +D +NTD + R R+R+ + L ++ ++ A Sbjct: 175 RDKISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAVENIVRSAGLLSMA 234 Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283 M+ + T+ H + + Q D LN+ + +L +LP Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291 Query: 284 YRSMERVML 292 + + ++ Sbjct: 292 SHQLTQQVI 300 >gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 469 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 69/279 (24%), Positives = 109/279 (39%), Gaps = 29/279 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VAVSGG DS+ L + L VDH +RET+ + +VS + Sbjct: 32 KMVVAVSGGGDSVALALLLKRFWPGEQVWG------HVDHGIRETSGRDADFVSALAESW 85 Query: 81 RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V + + AAR R+A + + A + A I TAHT DDQ ETV + Sbjct: 86 GIRCHVGRFHVPTDRIKGESMEMAARRVRHAFLEDLASRLGAGFIATAHTVDDQAETVML 145 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G GL G+ + RP + RR ++R +L + ++SW ED +N Sbjct: 146 NLLR-----GTGLWGLAG--IPQRRGPWVRPVIAMRRWELRRYLEESSVSWVEDETNLCC 198 Query: 198 RFERVRVRRFVRDIDLHA---------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R +VR + A +L ++ R A+L +H Sbjct: 199 DYRRNQVRLELIPQVERAFNPRFSERLFFLSLESAARRRQVEERRGAILPWLKRRLHPAP 258 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + L LR G ++ LP + Sbjct: 259 VCWDRKRASAVRGDDLLEALRAQ----GEELGLPSLDRI 293 >gi|226945924|ref|YP_002800997.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ] gi|226720851|gb|ACO80022.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ] Length = 435 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 60/306 (19%), Positives = 98/306 (32%), Gaps = 20/306 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS LL L + + +A+ V H L+ A D + VC++L + Sbjct: 22 LAFSGGLDSSVLLHLLAGLARHHALPP--LTALHVHHGLQSVADDWPEHCRQVCAQLGVP 79 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + + + AA A +++TA DDQ ET+ R R Sbjct: 80 LVIRRVRVAAGASLERAAREARYRAFAEALGAD---EVLLTAQHLDDQAETLLFRLLRGA 136 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G L+ M W+ RP L R ++ + + R + W EDPSN D RF R Sbjct: 137 GVRG--LAAMPGMRPLGRG-WLVRPLLEVSRGELEHYAVSRALHWIEDPSNRDLRFSRNF 193 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSIIAI 252 +R V + + A +L + Sbjct: 194 LRHRVLPSLAERWPQAVGNMARSAAHMAEARELLDDLAQLDLAAAGGEGGLPWLGLPSLA 253 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 +L + LR A + E + + + R Sbjct: 254 LAPLLGLSPARQRNALRHWLAPFTALPDSAHWAGWEALRD-AAPDAAPLWRLAGGELRRG 312 Query: 313 ANFLWI 318 +W Sbjct: 313 TGRIWW 318 >gi|152988564|ref|YP_001346885.1| hypothetical protein PSPA7_1501 [Pseudomonas aeruginosa PA7] gi|150963722|gb|ABR85747.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 439 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 77/373 (20%), Positives = 115/373 (30%), Gaps = 31/373 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS + RS SA+ V H L+ A + VC L I Sbjct: 25 VAFSGGLDSTV--LLHLLARLARSEALPALSALHVHHGLQTAADAWPAHCQAVCRSLGIP 82 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + + + AAR ARY A +++TA DDQ ET+ R R Sbjct: 83 LRVERVQVA-VTGSIEQAARAARYRAFQ--ASLGEGQVLLTAQHLDDQAETLLFRLLRGA 139 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 +G+ + + RP L R ++ ++ + W EDPSN D RF R Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFARNY 196 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R+ V + A +L D L++ Sbjct: 197 LRQEVMPRLASHWPQAAAGMARCAAHLREAEELLGELAAIDLRACRAPSDPDWLDLPRIA 256 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312 L LR A + + R+ + + + R Sbjct: 257 L-EPLRRLGAARQRNLLRAWLAPLTRLPDSDHWAGWESLRDAGEDADPIWRLESGELRRG 315 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSG 367 A LW LP VW+ L + L ++ P R G Sbjct: 316 AGCLWW------LPAAWRAAAGPFVWEHPAHPLALPGNGRLALLGELPPGPLRVDYRRGG 369 Query: 368 IPPIIAQRALSSM 380 +A R + Sbjct: 370 EVLALAGRGRRDL 382 >gi|294784705|ref|ZP_06749993.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27] gi|294486419|gb|EFG33781.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27] Length = 446 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217 >gi|256846174|ref|ZP_05551632.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2] gi|256719733|gb|EEU33288.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2] Length = 446 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217 >gi|34763208|ref|ZP_00144172.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887118|gb|EAA24225.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 446 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + ++F K + ++H LR E A + ++ + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79 Query: 81 RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217 >gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23] gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23] Length = 509 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 24/326 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+ R + L +++AVSGG DS+ L + + +DH LR + Sbjct: 6 EAFRERLLRLAPQDPLVLAVSGGGDSVALAHLVRRAGR-------RAVVAYLDHALRPDS 58 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLI 122 +++ +V D+ RL + + L A ARE RYA + AK + A I Sbjct: 59 GEDLLFVRDLAFRLGFPFYGERVEVGRIAKERGENLEALAREVRYAFLHRVAKEVGAKAI 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT DDQ ETV ++ + A +G+G+ + + RP L RE +R++LL Sbjct: 119 LTAHTLDDQAETVLLKLLQGTA-RGLGI--------REKEGMVVRPLLPFTREALRAYLL 169 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +W EDP+N D +R +R V + L + A L Sbjct: 170 GLGEAWREDPTNRDLSLDRNYLRLSVLPLILERFPRAREALARFAQAREEEEAFLEGVAE 229 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC- 301 + + LL V + R R++ L+ +G Sbjct: 230 VRLLPDPRFFVPAFRALP--LLRAPEAVRRRALRRVLEALDLRPEARLIALLEEALKGRA 287 Query: 302 -VSIGRVVIDRRANFLWITRAVRNLP 326 G + R L++ +P Sbjct: 288 GTLPGGYLARRYLGTLFLIPPSPQIP 313 >gi|15618905|ref|NP_225191.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|15836528|ref|NP_301052.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|16752030|ref|NP_445396.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39] gi|33242366|ref|NP_877307.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] gi|61216756|sp|Q9Z6R2|TILS_CHLPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4377326|gb|AAD19134.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189770|gb|AAF38647.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39] gi|8979370|dbj|BAA99204.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236877|gb|AAP98964.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] Length = 319 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 21/263 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+A+SGGSDS+ L L + F+A+ +DH R T+ Sbjct: 12 KQLDLFFASLDVKKRYLLALSGGSDSLFLFYLLKE-------RGVSFTAVHIDHGWRSTS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTA 125 E + + ++C+R + + + + L AR+ RYA + E + ++A I A Sbjct: 65 AQEAKELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLA 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV R L M + Y ++ + RP L + ++ L R Sbjct: 125 HHANDQAETVLKRLLESAHL--TNLKAMAE-RSYVEDVLLLRPLLHIPKSSLKEALDARG 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFV---------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236 IS+ +DPSN D+R+ R R+R+ + ++I L L ++ +L + Sbjct: 182 ISYLQDPSNEDERYLRARMRKKLFPWLEEVFGKNITFPLLTLG-EESAELSEYLEKQAQP 240 Query: 237 LIPKYLTVHMRSIIAISQDILNI 259 + + ++ Sbjct: 241 FFSAATHQDSQGELPCPDCLIQQ 263 >gi|296101358|ref|YP_003611504.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055817|gb|ADF60555.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 68/344 (19%), Positives = 120/344 (34%), Gaps = 35/344 (10%) Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 CS I + G+ A AR+ARYA A ++TA DDQ ET Sbjct: 2 CSAWAIPLEIKRVVLRDEGLGIEAHARKARYAAF--TAALQPGEALVTAQHLDDQCETFL 59 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + +R GLS M + + + RP L R + ++ Q +SW ED SN D Sbjct: 60 LALKRGSGP--AGLSAMPERSDFA-GTQLLRPLLGESRASLEAWAQQYQLSWIEDESNQD 116 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--Q 254 D ++R +R V L L + F D + A + + + Sbjct: 117 DGYDRNFLRLRV----LPLLTARWPHFADATARSALLCAEQESLLDELLSEELAELISVN 172 Query: 255 DILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRV 307 L I +R +A + + ++P + R+ + CV + Sbjct: 173 GALAIAPLEAMSPVRRAALLRRWLASHRATMPSRAMLGRIWDEVAQAREDATPCVHLNGF 232 Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367 + R LW ++ +L ++L W + L + + ++ +P Sbjct: 233 DVRRYKGQLWWVKSTPSLADVVLG------WPSPAKPLLLPWDMGSLSLETPGHVRLPKA 286 Query: 368 IPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 P+ + + + + GG+ L + P+ R T Sbjct: 287 EEPVTVRFKASGMLHIVGRNGGRKLKKIWQECNVPPWLRDTTPL 330 >gi|302380148|ref|ZP_07268620.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3] gi|302311931|gb|EFK93940.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3] Length = 451 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 14/237 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+ +SGG+DS+ LL L + D F + ++H R+TA + + + Sbjct: 19 KHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + L + R RY +E K+ + I AH DDQ+E Sbjct: 76 DENNIQFFSKKVDMKQYSIDNSISLEDSGRILRYKCFNEILKSEDFNKIAVAHHLDDQVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ R G+ G+C ++ N I RP L + +I ++L + +I + D + Sbjct: 136 TFFLHLFRGS-----GIDGLCGIQYHNKN--IIRPLLDVSKSEILNYLDENDIDYVTDET 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N +R ++R + + + V + +I + ++ Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISESIYRTVNILKDSKEIIDDVTNFKYKKLV 245 >gi|225620287|ref|YP_002721544.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1] gi|225215106|gb|ACN83840.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1] Length = 450 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 15/259 (5%) Query: 7 ESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 E+ F + ++ + + VA SGG DS LL + + + SF I V++ LR Sbjct: 4 ETYNFLLSNIDDIKNKTLAVAYSGGIDSQVLLNIAYRLKDELSF---DLIIIHVNYNLRG 60 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLI 122 E + ++ + D+ + I V K NS + AR RY E + Sbjct: 61 EDSTNDELFARDMAKKYNIEIYVKEIKPNSYNGKNIQLEARNDRYNFFEELHNKKIYDYL 120 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH DD ET+ R + L D +I RP L R+DI + Sbjct: 121 LIAHNKDDLAETIIYRMIKGAGTN-------VYKSLRDKKGYILRPILNFYRKDIEKYAK 173 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 N+ ED SN + + R ++R + + L + K K + ++ K + Sbjct: 174 NNNLEHREDVSNKKNYYSRNKIRNLIIPM-LEEINTNAKNNIIRFAKRSYEETYILRKKI 232 Query: 243 TVHMRSIIAISQDILNIDS 261 + I+ LNI+ Sbjct: 233 NKLYKKNISEKNTKLNIEK 251 >gi|256384073|gb|ACU78643.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384905|gb|ACU79474.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455764|gb|ADH21999.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 401 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 134/317 (42%), Gaps = 18/317 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+AVSGG DS+ LL + ++ + V++ R + ++ V+++C + Sbjct: 10 KKYLIAVSGGPDSVFLLCNVVKLVDPNN-----LVVCHVNYNFRSDSNNDQMIVTNLCKQ 64 Query: 80 LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +++ + + AR RY + A ++ AH F+D +ET + Sbjct: 65 FNLKLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNFNDLIETYLL 124 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + QR+ GL + + +L + RP L ++ I ++L IS+ D +N+D Sbjct: 125 QLQRNNLVDYYGL----KPVSHYKDLVVYRPLLDIKKSQILNYLNTNKISYAIDSTNSDT 180 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 +++R ++R + + + + ++ K + + V + + + + + +++++ Sbjct: 181 KYQRNKIRTTLNENNFTKILDQINKANNNLNSIKKIVDNYLKDNI---INNELNLTKELF 237 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRS---MERVMLFLKSGKR-GCVSIGRVVIDRRA 313 D + ++ + + L + +E V + S K +++ + + Sbjct: 238 LFDQNSIQRIIYTYFKLINKESLLLNRSNKTIIEIVKRLVNSNKNHWKINLNDHSLIKDY 297 Query: 314 NFLWITRAVRNLPTLIL 330 N L++ + P I+ Sbjct: 298 NKLFVIKNSLLEPKTII 314 >gi|297570853|ref|YP_003696627.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931200|gb|ADH92008.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 361 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 114/296 (38%), Gaps = 27/296 (9%) Query: 4 SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + R ++ + +LV VSGGSDSM L L V I A+ VDH Sbjct: 6 RFVNATRRALKEALEHCSDRVVLVGVSGGSDSMALAATLAFVAPKLG---ILVHAVCVDH 62 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 +R + E +V D+ + + V +G AREARY I+ +A+++ Sbjct: 63 GIRPESVQEAAFVRDILRKRGVPVEVCRVDV-DGSSGPEGNAREARYDAIATYARSLGNA 121 Query: 121 ----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 ++ HT +DQ ETV M R K + + ++ + RPFL R++ Sbjct: 122 AGPAVVFLGHTQNDQAETVLMGFARGSGAKSIAGMPAVGHLPLHRDVPMQRPFLEFTRDE 181 Query: 177 IRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +R+ + ++ W +DPSN D R VR + L Sbjct: 182 LRTVCSELDVPWVDDPSNDLDGPWTCSDGSPLRRSAVRHRILPELQDVLGSGTIGAIART 241 Query: 228 VKVNNAVAMLIPKYLTVHM------RSIIAISQDIL-NIDSTLLFYLLRVSAAICG 276 + A + Y + + R+ I + + L ++ + L+ + G Sbjct: 242 ASMLQADNAALEHYARIELERVCTSRNPITLDCESLKDVPEAVRRRTLKYAVEESG 297 >gi|146281928|ref|YP_001172081.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501] gi|145570133|gb|ABP79239.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501] Length = 382 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 58/277 (20%), Positives = 89/277 (32%), Gaps = 18/277 (6%) Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 AI V H L+ D + VC +L + +V + P L AAR+ARY S Sbjct: 2 IRAIHVHHGLQAAGDDWPAHCQRVCDQLGVTLEIVRVRVV-PGASLERAARDARYQAFS- 59 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A L++T DDQ ET+ R R +G+ ++ + RP L Sbjct: 60 -ACVGEGELLLTGQHRDDQAETLLFRLLRGAGVRGLVAMPDARSM---GRGSLVRPLLEV 115 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R D+ + ++W EDPSN + R +RR V + + Sbjct: 116 SRADLEDYARANGLAWVEDPSNQQLEYSRNFLRREVLPLLQQRWPRAASSLARTAALMAE 175 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLL-----------FYLLRVSAAICGGQISL 281 A +L + LN+ S L LR A Sbjct: 176 AQHLLDELAQQDLAAAQTGSDCRWLNLPSLALAPLRELTSARQRNALRHWLAGLTLAPDE 235 Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 + E + K + + R +W Sbjct: 236 NHWAGWE-CLRDAKPDATPRWRLAGGELQRSGERVWW 271 >gi|171911398|ref|ZP_02926868.1| tRNA(Ile)-lysidine synthetase [Verrucomicrobium spinosum DSM 4136] Length = 332 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 26/316 (8%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 LV VSGG DS+ + G K ++H LR + + ++V D+ Sbjct: 26 LVGVSGGRDSVA------LLHFLLLLGYRKLIVCHLNHQLRDAESNTDAQFVRDLAIAHG 79 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + H ++ ++ +T L A R+AR A + A + + AH DD +ET+ Sbjct: 80 LGHEEITVDITAEAARTKTSLETAGRDARRAFFEQAAARHDCRNVFLAHHADDDVETILH 139 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R +G + GM L I+RPFL RE+I +++ +++ ED +N Sbjct: 140 HLFRGSGLRG--IRGMDPISNSPGGLLITRPFLEITREEIDTYITTHGLAFREDSTNAGS 197 Query: 198 RF---ERVRVRR----FVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246 R R+R F++++ + +++F L + + +A + + + + Sbjct: 198 SLGAPTRNRIRHRVLPFLKEMFQREVAGTLQRFARLAGRDEDFLQSATSAFLTDHQLLQA 257 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305 + ++ + L +LR + G +E + L S + V++ Sbjct: 258 DRSLTVNSALKTAHPALQSRILRWWLREV-HAVPNIGNAEIESALELLSSPRVSRVNLPS 316 Query: 306 RVVIDRRANFLWITRA 321 ++ + R+A L++ +A Sbjct: 317 QLRLRRKAGRLFLEKA 332 >gi|33241260|ref|NP_876202.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|61216600|sp|Q7V9L9|TILS_PROMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33238790|gb|AAQ00855.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 336 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 113/294 (38%), Gaps = 17/294 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L Y + +L++VSGG DSM LL + + + K DH ++ + + Sbjct: 29 LPYGSSLLISVSGGQDSMALLKLILDLQ---RIYEWKVHVWHGDHGWHNQSRQIAEELEE 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128 C +++ + +K + AR RY + + AK ++ ++T HT Sbjct: 86 WCKCQKLSFFC--NRTNKQKVSTEEDARNWRYKSLIQQAKTLSKESPSLPCERVLTGHTA 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D+ ET M R KG LS + + + + + RP LR R++ + ++ Sbjct: 144 NDRTETFIMNLARGAHLKG--LSSLREDRTLETKIQLIRPILRFSRQETIQICDEMDLPI 201 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 DPSN++ + R ++R + + + +L ++ + Sbjct: 202 WIDPSNSNIAYSRNKIRAEIIPVLESLHPQSTIRISNLAERLTSLQKDQHQLAHLALGAL 261 Query: 249 IIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + +S+ + S + ++ + + L + +E + + K Sbjct: 262 LTSTGLSRSKMTKLSKTVRAIILAQ-WLEDNKAPLLSSKQLEELSQKIGKNKGP 314 >gi|167933096|ref|ZP_02520183.1| putative cell-cycle protein [candidate division TM7 single-cell isolate TM7b] Length = 228 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 20/240 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ A+SGG DS+ LL L + + V+H +R + ++ +V + ++ Sbjct: 2 LIAAISGGVDSIVLLDLLS-----KRYKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + + AR+ RY + + +K NA I+TAH DD +ET+ + R Sbjct: 57 MRYRQIDLNLGLHAS--EEVARDQRYTFLRKLSKEFNA-KIVTAHHADDIIETIAINLVR 113 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ + D I RP + D+ + + + W ED +N+ D + R Sbjct: 114 GTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDLYLR 164 Query: 202 VRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R+R+ ++ ++ L + + +N A ++ ++ +IL Sbjct: 165 NRLRKRIKTLNPSIKQNLIQLWRNQTKIARDINKETAKFSKNSRYFYLMISNDVAVEILR 224 >gi|205356113|ref|ZP_03222880.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345956|gb|EDZ32592.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp. jejuni CG8421] Length = 321 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|300769992|ref|ZP_07079871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Sphingobacterium spiritivorum ATCC 33861] gi|300762468|gb|EFK59285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Sphingobacterium spiritivorum ATCC 33861] Length = 443 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 84/435 (19%), Positives = 142/435 (32%), Gaps = 43/435 (9%) Query: 3 LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ +E +V R I++AVSGG DSM + + Sbjct: 1 MNVLERFHRYVSQNRLFGPDDKIVLAVSGGKDSMLMARLFLE-------SNYPVIIAHCN 53 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 LR E + + + V + I V + + + + AARE RY E Sbjct: 54 FSLRGEESDLDQQLVEAFGEKYGIPVFVKRFDTQAYAEENKISIQMAARELRYQWFEELR 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 I A +D +ETV + R G GL+G+ I RP L Sbjct: 114 IAQGCAYISVAQHRNDHIETVLLNMIR-----GTGLAGLQGIQPKRE--RIIRPLLFLLA 166 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 +I + I + +D SN ++ R ++R + + ++ F K A Sbjct: 167 AEIAEAVRLLQIPYRDDQSNFSVKYARNKIRLNIVPLMEEINPEFVQSFTSSIDKFAGAY 226 Query: 235 AMLIP--KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 +L + + ++ ++L +L YL + Q +E ++ Sbjct: 227 QLLQDFVHPVRQSLFKENKVTTEVLIEKKSLEPYLTNTALLYELFQPYHFQKNVLEDLVA 286 Query: 293 FLKSGKRGCVS--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-RYQFQNLSD 349 ++G R+++DR L T I +E W G R+ + S Sbjct: 287 TWENGTGRIFESYTHRLLVDRTHLILHPTGPEVEAKVCIEESDEQAEWKGFRFNIEKSSS 346 Query: 350 SLIQ----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVA 405 + I I + K P I Q P GK ++ + Sbjct: 347 ADIVKEKHIAKIDWDKLQFPLQIRS--WQEGDIFYPLGMEGKKKVSDY----------FI 394 Query: 406 YAFSISFGKVFIPRL 420 SF K IP L Sbjct: 395 QQKINSFAKARIPIL 409 >gi|313681435|ref|YP_004059173.1| tRNA(ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994] gi|313154295|gb|ADR32973.1| tRNA(Ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994] Length = 338 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 16/192 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + +L+A SGG DS L L I F V++ RET+ E + + Sbjct: 10 LREGRVLLAFSGGVDSTALFHLLLE-------NNIAFDIAHVNYHTRETSDAEEKNAERL 62 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +R + S + ARE RY K T ++TAH +D+LE + Sbjct: 63 AARHSLQCYAHSCRLG--GINFEHRAREERYRFFGYLMKKHGYTYLLTAHQLNDRLEWLM 120 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ R GL M +D + I RP L R+ I ++L +R I D SN Sbjct: 121 MQICRGS-----GLPEMLGIRSHDSRDGIEILRPLLEWDRDSIEAYLHERKIPHHIDESN 175 Query: 195 TDDRFERVRVRR 206 D+R+ R R Sbjct: 176 ADERYTRNFFRH 187 >gi|17545889|ref|NP_519291.1| cell cycle protein [Ralstonia solanacearum GMI1000] gi|61216686|sp|Q8Y074|TILS_RALSO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|17428184|emb|CAD14872.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 462 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 9/302 (2%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG DS LL A+ + ++ A+ + H L+ A + + + + Sbjct: 26 VAVALSGGRDSAALLHAVAAWRDAAGVP-VRLVALHIHHGLQADADAWEAACARMAAAVG 84 Query: 82 IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 A V + S G+ AAREARYA + ATL++TAH DDQ ETV ++ Sbjct: 85 AAFRVRRVRVSTDAGRGIEEAAREARYAALDALCAETGATLLLTAHHLDDQAETVLLQLL 144 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R G+ M + + + RP+L R DI ++ ++W EDPSN D R+ Sbjct: 145 RGAGLDGLSAMPMA----RERRVTLLRPWLDVPRGDIEAYARAHALAWVEDPSNGDARYA 200 Query: 201 RVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R +R + + H A + + + + + L + + Sbjct: 201 RNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIEEVAQTDLARIAPAGTLAVAGLAA 260 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 + LR A G + + +L ++ CV + + R W Sbjct: 261 LSGPRQRAALRAWLAGAGLRAVSSRRLEDLRAQLLGARADGAPCVRLPGAQVRRYRGQAW 320 Query: 318 IT 319 I Sbjct: 321 IE 322 >gi|305432244|ref|ZP_07401407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter coli JV20] gi|304444592|gb|EFM37242.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter coli JV20] Length = 321 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + SL+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILSLLKKGRNLLAFSYGSDSSALFHFLVQ-------KKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E + ++ + S K AR+ RY + N + ++ AH Sbjct: 55 LEEQKAKELALEFHKKIFIKSAPVIK--GNFEKEARDFRYDFFEKICLEQNYSNLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQLE M+ R + C+ N + RP L +++I S+L + +I Sbjct: 113 LNDQLEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFMSKDEILSYLKENDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + +D SN ++++ R +R+ + + + +K+ Sbjct: 170 YFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR 204 >gi|237736633|ref|ZP_04567114.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium mortiferum ATCC 9817] gi|229420495|gb|EEO35542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium mortiferum ATCC 9817] Length = 441 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 29/295 (9%) Query: 3 LSPIESV--RFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 +S E V R SLV I+V SGG DS+ L+ L + R + ++ Sbjct: 1 MSLFERVASRNKKESLVENGDRIVVGFSGGPDSVFLVEMLLKL---REKIDFDIVLVHIN 57 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 H LR E A+ + + + + + L A REARY+ E Sbjct: 58 HLLRGEEAQRDEDFSINYGKSKGLKVFARKINITSLGKEKGLSLEEAGREARYSFYKEVL 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + N I AH DDQ+ET R R G GLSG+ RP + Sbjct: 118 EKTNGNKIALAHNKDDQIETFMFRLTR-----GTGLSGLEGIATKRDRY--IRPISEIYK 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDL 226 +I ++L + NIS+C D +N ++ F R +R + ++ +++ +D+ Sbjct: 171 SEIVNYLDENNISYCIDSTNLENEFTRNSIRIDLIPFIEKRYNPKFKDKIFSLIEEIRDI 230 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281 + + + T+++ SI+ + I L YL + + +ISL Sbjct: 231 NIFIEKEIEQF-SYNETINIESILKFPKSIR--GKILSKYLYKYGLEVNRKKISL 282 >gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY] gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY] Length = 335 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 122/330 (36%), Gaps = 33/330 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S +V F L + VA+SGG+DS LL+A + + A V H Sbjct: 1 MTQSFDAAVAAFRPRLP----LAVALSGGADSTALLLACAARWPG------QVVAFHVHH 50 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119 L+ A ++ +C RL I V AAR+ RY A A Sbjct: 51 GLQAAADGFEQHCVALCERLGIPLWVRRVDARHAAGQSPEDAARQVRYKAFEALALDCQA 110 Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I A DDQ+ET+ + R G+ + RP LR Sbjct: 111 QAAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWQRAGMDWCRPLLRVAGA 167 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 D+R++L+ R+ W EDP+N D+RF R R+RR + L AL +F+D + A Sbjct: 168 DVRAWLVARDERWVEDPTNADERFTRNRIRRQL----LPALQQAFPQFRDTFARSCEHAA 223 Query: 236 MLIPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + AI Q + + +LR + + P + + Sbjct: 224 QASELLQELAAADAAAIGQPPRIAALRALGRARQANVLRHWLRV--HHATTPTAAQLNEL 281 Query: 291 MLFLKS----GKRGCVSIGRVVIDRRANFL 316 + L + G R + +G + R A L Sbjct: 282 LDQLAACATRGHRIHLKVGGGYVVREAEVL 311 >gi|71906484|ref|YP_284071.1| PP-loop [Dechloromonas aromatica RCB] gi|71846105|gb|AAZ45601.1| PP-loop [Dechloromonas aromatica RCB] Length = 323 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 113/325 (34%), Gaps = 26/325 (8%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 V F+ + + P+ + V +SGG DS+ LL L + + AI V H L Sbjct: 14 ARVGAFLAARLAPSERLAVGLSGGCDSVVLLHLLTRLGFAG-----RLDAIHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + +D C+ L + ++ ++ GL AAAR+ARY++ +E A ++ Sbjct: 69 ADAWGTFCADYCTGLGVPLTIRHVSVDTASGLGLEAAARKARYSVFAEVA----TDCLLL 124 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DQ ETV R G +GM + RP L R +I ++ + Sbjct: 125 GHHRSDQAETVLFNLLRGTGV--TGAAGMPAERQFGRLRL-LRPLLASSRNEIEAYAMSA 181 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 ++W +D SN D R +R L AL + + + + Sbjct: 182 GLAWIDDESNADVSLTRNFLRHE----ALAALAQRFPAAEASLAQAAANFGEAAALLDEL 237 Query: 245 HMRSIIAI-SQDILNIDSTLLFYL------LRVSAAICGGQISLP-GYRSMERVMLFLKS 296 + I + + + L LR G Q+ + R + Sbjct: 238 AEQDWQQIGDGEAARLSEMRMLSLPRLKNLLRHRLRRLGWQVPVATRLDEFARQLQSAGP 297 Query: 297 GKRGCVSIGRVVIDRRANFLWITRA 321 + + + + L Sbjct: 298 DRHPELVLPDGKMRAGRGLLHWMPE 322 >gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Magnetospirillum magnetotacticum MS-1] Length = 343 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 129/318 (40%), Gaps = 12/318 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ + R+ ++DH LR + E R V + + + Sbjct: 28 LLAVSGGPDSTALMHV-----AVRAGTGAHLRVATIDHGLRPGSAGEARAVGHLAGEMGL 82 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H++++W++ + + + AR+ARY L+++HA ++ A L++TAHT DDQ ETV MR Sbjct: 83 THAILAWESPRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQAETVLMRLMAG 142 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD----- 197 GL+GM + ++RPFL + D+ ++ + + DPSNTD+ Sbjct: 143 SGP--AGLAGMRHERPLAPGIRLARPFLAVPKADLVAYCEAHRLPFVRDPSNTDERFARA 200 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R R+ + L ++ + A ++ + ++ + Sbjct: 201 RLRRLLPLLAAEGLSAARLGRLAERVGRDEAALEQHSAAVLAQVADTVDGGLLLDGDRLR 260 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 ++ +L + R +ER+ + ++ GR + L Sbjct: 261 QEPPAIVLRVLDAAIDAVAPACPQVAPRRLERLENLVIEALLPALAEGRALRRTLRGVLV 320 Query: 318 ITRAVRNLPTLILYPEET 335 R L P Sbjct: 321 EADRTRKLRLGAAPPRRR 338 >gi|124267639|ref|YP_001021643.1| putative cell cycle protein [Methylibium petroleiphilum PM1] gi|171769838|sp|A2SIL9|TILS_METPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|124260414|gb|ABM95408.1| putative cell cycle protein [Methylibium petroleiphilum PM1] Length = 452 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 138/375 (36%), Gaps = 31/375 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 RS P + VA SGG DS LL A ++++ R G + A+ V H L A + + Sbjct: 14 RSAEPPRGLAVAYSGGRDSTALLHA--TLIAARDSG-LTVHALHVHHGLSARADAWLAHC 70 Query: 74 SDVCSRL---RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 C R + + + + L A AR ARYA + A L++ AH Sbjct: 71 ESQCRRWARRGLPVCFRAMRVQLACRSGDSLEAVARAARYAALRTLAVEQGVALVLLAHH 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DQ ET+ +++ R GL+GM +I D + +RP+L RE I +++ + +S Sbjct: 131 QRDQAETLLLQALRGAGV--AGLAGMPRSIERD-GITWARPWLARPREAIEAYVRRYRLS 187 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + +D SN D RF R R+R V A D A A + Sbjct: 188 YIDDDSNDDPRFARNRLRLQVWPALQAAFPQAEGTLADAARWAQQAAACVADLAALDLAA 247 Query: 248 SIIAISQDIL----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 L + + LR G ++ P +ER+M L +G Sbjct: 248 CAATNDVLPLTAWRQLAPHRAVHALRRWLQQAG--VTAPTAADLERLMAELPAGAPARWP 305 Query: 304 IGRVVIDRRANFLWI------TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 + + R L TR + L GRY+ L + + Sbjct: 306 LKGGELRRYRGELRFVPTPDATREPPAVRETTLALRRG----GRYR---LPGWGGVLVAE 358 Query: 358 SYRKADVPSGIPPII 372 R VP+ ++ Sbjct: 359 RVRAGGVPAAQLAVL 373 >gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594] gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594] Length = 319 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 119/297 (40%), Gaps = 23/297 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG DS L +L + + A ++DH LR A DE V +C RL Sbjct: 15 RLGVAVSGGPDS------LALLLLANTALPGRVVAATIDHGLRPEAADEAAMVGGLCERL 68 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + H V AR+ARY + A TAH DDQ ET+ MR Sbjct: 69 GVLHHTVEVALEP--GNTQDRARKARYEALCRCFGEQGADTFATAHHADDQAETLLMRFN 126 Query: 141 RDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R G+ +L + RP L RRE++ + ++ +DPSN D Sbjct: 127 RGSGLSGLAGIRARTVLLSPEPLGEYLVVRPLLEWRREELAGIVADAGLAPVQDPSNVDT 186 Query: 198 RFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 R++RV+VRR + D +D A+ + Q+ V + A + + ++ Sbjct: 187 RYDRVQVRRALADLPWLDPLAMARSARHLQEAEDAVRRSSADVYNRCTYREGETVWFHWG 246 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 ++ + +L A S+ R++ L S G S+G VV R Sbjct: 247 HARTVEIEAVRLILLEFGADV-------PRSSIARLIDQLMSEGAG--SLGGVVARR 294 >gi|289208652|ref|YP_003460718.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix] gi|288944283|gb|ADC71982.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix] Length = 418 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 84/405 (20%), Positives = 150/405 (37%), Gaps = 36/405 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +VR F++ + VA SGG DS LL AL + A V+H LR Sbjct: 9 MAAVRAFLQDHPGATSLRVAFSGGRDSSVLLHALAQLRPQ------GLEAWHVNHGLRPD 62 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 A+ + + V L + +V + G AAAR ARY + E LI+T Sbjct: 63 AEAQAAFCVRVAEALEVPLTVRNVIVLDDASEGPEAAARRARYTALREGLGER--DLILT 120 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ET + + R +G+ + + + W+ RP L E I + Sbjct: 121 AQHADDQAETFLLAALRGSGPEGLQGM---RVLRREGDTWLGRPLLAVPGESIAGYARVA 177 Query: 185 NISWCEDPSNTDDRFERVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + W DPSN D RF+R +RR + R + +Y + + + + + +A L K+L Sbjct: 178 ALDWYHDPSNDDTRFDRNFLRREIFPRLAERFPVYGSLARCARWQREAVDRLASLEDKHL 237 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKR 299 +A ++ L R+ A + + PG+ +E R + + + Sbjct: 238 PGEASLEVASLAEL-----DLPARRARLRAWLRAQGLRPPGHARLEEFCRQLEVHGADRN 292 Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW-DGRYQFQNLSDSLIQIGPQS 358 + + ++ P + W G + +++ Sbjct: 293 PELRWADGWMGVYRGTIY----AEAPDGKPAAPGDVMPWPPGHARLTLPDGRVLERAALE 348 Query: 359 YRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSR 395 D + +R ++ + G +PL + P++R Sbjct: 349 ALGVDAQEALEVGF-RRGGETVVTPAGRRPLKKRLQERGVPPWAR 392 >gi|299771517|ref|YP_003733543.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1] gi|298701605|gb|ADI92170.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1] Length = 418 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 17/273 (6%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L+ + + + V++ +RL I + + + L A AR+ARY Sbjct: 8 KIRAIYIDHQLQSQSAEWGKLVAEQATRLDIPFIIQKVQVTD--GNLEAQARQARYQAYR 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +H + ++ AH DQ ETV +R G+ ++ Y +++ I RPFL Sbjct: 66 QHLQPN--ETLVLAHHQQDQAETVILRLLSGAGVDGLAAM---QSVDYRVDMTIWRPFLD 120 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 RE I + Q I + DP+N D ++R R + L + KM++ + Sbjct: 121 LSREQIADWTTQLEIEYVNDPTNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLM 179 Query: 232 NAVAMLIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + ++ + L ++ +L++ LL S + G P + + Sbjct: 180 QDASEILEEVLKADLKHCGTAECLDLTKLLDLSVARQRQLL--SVWMKGDGQYRPAFEMV 237 Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 ER+ ++ KS + + + R + L+ Sbjct: 238 ERLKNEVIDSKSDAQAALHWNQFYYVRYQHHLY 270 >gi|313848263|emb|CBY17264.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|328914942|gb|AEB55775.1| MesJ/Ycf62 family protein, putative [Chlamydophila psittaci 6BC] Length = 297 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 95/246 (38%), Gaps = 19/246 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A+SGGSDS+ LL L S + F+A+ VD+ RE++ E + C + Sbjct: 6 LLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAEELKLRCQEEGV 58 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + K AAR RY L + + N I AH +DQ ETV R Sbjct: 59 PLIVNHVPSKDKTSKDPENAARRYRYELFYKICREENLAGIFLAHHANDQAETVLKRVLE 118 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 L GM Y + + RP L ++ + L NI + D +NTD+R+ R Sbjct: 119 GAHLG--NLKGMTSEASY-NGIPLLRPLLHIPKQILIHTLDAENIPYVHDVTNTDERYLR 175 Query: 202 VRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R+R + L + ++L + + H I I Sbjct: 176 ARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPFLENIRQEHTTWSIEIP 235 Query: 254 QDILNI 259 + ++ Sbjct: 236 KSLIEQ 241 >gi|86152849|ref|ZP_01071054.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843734|gb|EAQ60944.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter jejuni subsp. jejuni HB93-13] Length = 321 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 108/282 (38%), Gaps = 24/282 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ R + K Q+ AR+ RY + + ++ AH Sbjct: 55 LEELKAKELALRFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 I Q +L L+ + + G +S + + R Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKELLR 259 >gi|57238476|ref|YP_179607.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|61216392|sp|Q5HSX8|TILS_CAMJR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|57167280|gb|AAW36059.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|284926661|gb|ADC29013.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni IA3902] gi|315058908|gb|ADT73237.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 321 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 107/280 (38%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|291059764|gb|ADD72499.1| tRNA(Ile)-lysidine synthase [Treponema pallidum subsp. pallidum str. Chicago] Length = 447 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 121/321 (37%), Gaps = 38/321 (11%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLR 81 LVAVSGG+DS+ LL A H + D + A++VDH LR + R+V +C+R Sbjct: 2 LVAVSGGADSLALLYAAHELAPD---FGVCACAVTVDHSLRAQEGALDARFVRALCARFS 58 Query: 82 --IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + V V G+ AAR RY + A A +++TAHT DDQ Sbjct: 59 PPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTRDDQY 118 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ MR + A + + RP L+ R + FL R + W ED Sbjct: 119 ETLLMRLFQGAAASAL-------QGIRAARGRYVRPLLKVSRTCVEDFLQTRGVRWREDA 171 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SNT ++ R R+R + L ++ + + A Sbjct: 172 SNTCRKYVRNRIRHELIPALDAVLAGWRSGLDKTFAGISAEHSFCVAALTRWREGCSHAW 231 Query: 253 SQ--------------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 D L + L F+LL+ + G +P +ER F Sbjct: 232 EPVPRALGTRLRMPRSDFLAAEFILRFFLLQEACVRLGVSHRVPRGA-LERCARF---DG 287 Query: 299 RGCVSIGRVVIDRRANFLWIT 319 + + + ++R ++ + Sbjct: 288 VRRIHVSGLQLERAGAYVLFS 308 >gi|254302226|ref|ZP_04969584.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322418|gb|EDK87668.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 448 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + F K + ++H LR E A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---HFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY SE + + AT I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEIGKTLEEVGREERYKFFSEIYEKVRATKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N + RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNVIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217 >gi|255659245|ref|ZP_05404654.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544] gi|260848699|gb|EEX68706.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544] Length = 466 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 25/307 (8%) Query: 7 ESVRFF-VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 E+VR+ + L++P H+LVA SGG DS+ L +L R ++ + +H +R Sbjct: 4 EAVRYARAQDLLHPGMHVLVACSGGPDSL---ALLDMLLQLRRRFRLVLTVAHYEHGIRG 60 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ ++ R+V C + + V + AARE RY + + + A Sbjct: 61 ASSAEDARFVDAFCREREVPCFIGHGDVPAFAKAQGKSVELAARELRYVFLWQTLERCGA 120 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ TAH DDQ ETV MR R G+ RP L RREDI Sbjct: 121 DVLATAHHADDQAETVLMRILRGTGLDGLAAM-------KPREGKKIRPLLFARREDILD 173 Query: 180 FLLQRNISWCEDPSNTDDRFERV--------RVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 + +R ++ D +N R +R+ HAL + + + Sbjct: 174 YCRERGLTPRHDATNDIPNCTRNLLRLKVLPYLRQSCNPEVAHALCQLAELARVDCDYLE 233 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + P + L LR G + +E + Sbjct: 234 QQLEESWPYLTREEDGRCSIVLTTFQRRHPALQRRALRRLYTGIAGMGRDLSFSHVEELR 293 Query: 292 LFLKSGK 298 L SG+ Sbjct: 294 LLALSGQ 300 >gi|86149480|ref|ZP_01067711.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596817|ref|ZP_01100054.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|218563056|ref|YP_002344835.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|61216748|sp|Q9PMK7|TILS_CAMJE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|85840262|gb|EAQ57520.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88191658|gb|EAQ95630.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360762|emb|CAL35561.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930835|gb|EFV09827.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 305] Length = 321 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + SL+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|124021791|ref|YP_001016098.1| ATPase [Prochlorococcus marinus str. MIT 9303] gi|123962077|gb|ABM76833.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9303] Length = 343 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 110/298 (36%), Gaps = 20/298 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +L+AVSGG DSM LL L + + DH + + + D Sbjct: 29 LPAEASLLIAVSGGQDSMALLGLLIDLQRKHGW---SLEVWHGDHNWHQQSATIATELKD 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-------INATLIMTAHTF 128 C ++ S + QT A AR RY ++ H + ++T HT Sbjct: 86 WCEAHNLSF--WSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRN 185 D+ ET+ + R G+ C I D N+ + RP L RED + + Sbjct: 144 SDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSELS 203 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK---YL 242 + DP+N++ F R RVR+ V + + L ++N+ A L Sbjct: 204 LPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRIAALAERLNHHHADQQAIAMLAL 263 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + QD+ + T LL G SLP +E++ + GK Sbjct: 264 NNLSKQNGLCRQDLAQLPITARTTLLAYWLKR-SGAPSLPA-VQLEQISQSIGPGKPP 319 >gi|15834848|ref|NP_296607.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] gi|270285014|ref|ZP_06194408.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] gi|301336412|ref|ZP_07224614.1| tRNA(Ile)-lysidine synthase [Chlamydia muridarum MopnTet14] gi|61216745|sp|Q9PL79|TILS_CHLMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|7190268|gb|AAF39100.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg] Length = 321 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 20/262 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ Sbjct: 10 KQLEVFFSSLDKKKKYLLALSGGSDSLLLMYLLRS-------RGISFTAVHVDYGWRETS 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMT 124 E ++ +C R +I + + + P + + AR+ RY L K + Sbjct: 63 YQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRYELFYRLCKERLFAGVFL 122 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DDQ ET+ R L GM Y + + RP L + I L Sbjct: 123 GHHADDQAETILKRVFEGAHLG--NLKGMARYGTY-KGITLLRPLLHITKRQIVEALDNY 179 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 I + +D +N D+RF R R+R + L + +LR ++ A Sbjct: 180 RIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFLAEDSAELREYLDQQAAP 239 Query: 237 LIPKYLTVHMRSIIAISQDILN 258 + + + + + + Q++L Sbjct: 240 FLSQVIDNEIGQFLPVGQELLQ 261 >gi|213156069|ref|YP_002318114.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057] gi|215484603|ref|YP_002326838.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294] gi|213055229|gb|ACJ40131.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057] gi|213986972|gb|ACJ57271.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294] Length = 424 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 19/290 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL + + + AI +DH L++ + + V+ + L I + + + + Sbjct: 1 MLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIA 54 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 L A AR+ARY +H + +++ AH DQ ETV +R G+ Sbjct: 55 N--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQ 110 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 D Y ++ I RPFL RE I + Q + + +DP N D+ ++RV R + Sbjct: 111 AID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWP-F 166 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--V 270 L + + KM++ + + ++ + L + + L S L F R + Sbjct: 167 LTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLL 226 Query: 271 SAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 SA + G P + +ER+ ++ KS + + + R N L+ Sbjct: 227 SAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQFYYVRYQNILY 276 >gi|313902544|ref|ZP_07835945.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM 13965] gi|313467230|gb|EFR62743.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM 13965] Length = 632 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 98/278 (35%), Gaps = 17/278 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L +LVAVSGG DSM LL L + VDH LR + + R+V Sbjct: 31 RLLEAGQRVLVAVSGGRDSMVLLDVLDRLRPVLGLAA--LGVAHVDHGLRPDSAGDARWV 88 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + + L AR ARY ++ A+ A + AH DQ E Sbjct: 89 EEQAAARGLPFLCRRVHIRPGRRSLEEGARLARYRALAAMARQFGAQRVALAHHAGDQAE 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV MR +G+ RP L + ++ R + W +DPS Sbjct: 149 TVLMRLLAGAGVRGLAGMPW-------RRGPFVRPLLATEPALLAAYAAARGLGWRDDPS 201 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D F R R+R + + L+ + + + A+L + + R+ Sbjct: 202 NQDLTFLRNRIRHRLLPL------LEAEFNPRVVTALGRVAAVLAAEGALLRRRTRRLEG 255 Query: 254 QDILNIDSTLLFYL--LRVSAAICGGQISLPGYRSMER 289 + + + L ++ Y + R Sbjct: 256 RLGYRLGPRWACRVDDLARLPVADQRRLLQAAYHRLAR 293 >gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054] Length = 375 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG+DSM L A ++ A++VDH L++ + + V+ L Sbjct: 77 VLVAVSGGADSMALATATAFEAPKLG---LRVGAVTVDHGLQDGSAERAEQVAVRLRELG 133 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 134 LDPVEAVAVRVGREGGPENAARDARYAALDLAAERHGALAVLLGHTRDDQAETVLLGLAR 193 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + RP L R R ++I +DP NTD + R Sbjct: 194 GSGARSLAGMPAQK-------GRYRRPLLELDRAATRQACSAQSIPVWDDPHNTDPAYTR 246 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 RVR V + L + + ++ A + ++ + R + Sbjct: 247 SRVRHEVLPVLEKHLGGGVVEALARTARLFRDDADALDQWAALAERDL 294 >gi|62185345|ref|YP_220130.1| hypothetical protein CAB732 [Chlamydophila abortus S26/3] gi|81312504|sp|Q5L5B2|TILS_CHLAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|62148412|emb|CAH64179.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 317 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 19/262 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F +L L+A+SGGSDS+ LL L S + F+A+ VD+ RE++ Sbjct: 10 KRLEVFFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESS 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 E + C + V + AR RYAL + + N I A Sbjct: 63 YREAEELKLRCQEEGVPLIVDHVPSKYTTSKDPENTARRYRYALFCKICREDNLAGIFLA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV R + L GM Y+ + + RP L ++ + L N Sbjct: 123 HHANDQAETVLKRVLEGASLG--NLKGMTSGASYNR-IPLLRPLLHIPKQVLMQTLDAEN 179 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAML 237 I++ D +NTD+R+ R R+R + L + ++L + Sbjct: 180 IAYVHDVTNTDERYLRARMRNKIFPWLEEIFAKNITQPLLTLAQDSEELSCYMKQQAQPF 239 Query: 238 IPKYLTVHMRSIIAISQDILNI 259 + H I I + ++ Sbjct: 240 LENIRQEHTTWSIEIPKPLIEQ 261 >gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2] gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2] Length = 377 Score = 177 bits (449), Expect = 4e-42, Method: Composition-based stats. Identities = 71/310 (22%), Positives = 120/310 (38%), Gaps = 15/310 (4%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK---FSAISVDHCLRETAKD 68 +R IL+AVSGG DS+ L++ R + +VDH LR + Sbjct: 41 LLRPWEEAQKILLAVSGGPDSIALMLLASRWARAREERGLAAPLLHVSTVDHGLRTGSGA 100 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 E V+ + H + W KP+T + AREARY L+ A + A +I TAH Sbjct: 101 EAEAVAAWAKAAGLPHETLIWNGGKPKTRIQERAREARYDLLCACAARLGADVIATAHHA 160 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ET+ R R G+ + L SRP L C + + ++ R + Sbjct: 161 DDQAETILFRLTRGSGPGGLAGM---SARFFRHGLIHSRPLLSCDKAALIAYCEARRHDF 217 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 DPSN + F R R+R ++ + L L++ + + A A + +T+ Sbjct: 218 FADPSNCNPAFARTRMRALLKLLADEGLDRAALLRLGRRAARAEEALAARARAVAADVTL 277 Query: 245 HMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKR 299 I + +L ++ + +E + + L+ G+ Sbjct: 278 QSGGGAVIDMAQLAREPQEILIRVVAAQILEASAKSGPLRLERLETLAISLRQACLDGRP 337 Query: 300 GCVSIGRVVI 309 ++G + Sbjct: 338 YAATLGGAAL 347 >gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36] gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36] Length = 479 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 137/394 (34%), Gaps = 69/394 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P + VA+SGG DSM L L + AI++DH R + E V + Sbjct: 21 PKKVAVALSGGPDSMLLTWLLSQCQ-------FEIYAITIDHKYRTESSREALAVHERVK 73 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + S + ARE RY +++ ++ H DDQLE Sbjct: 74 NWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIPVLFLGHHRDDQLE 133 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNL-------------WISRPFLRCRREDIRSF 180 T R Q + + G+ + + +L I RPF ++DI Sbjct: 134 TFIQRLQGNSSIFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILRPFWDYDKQDILET 193 Query: 181 LLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA--------LYLKMKKFQDLRVKVN 231 NI++ DP+N D R +R + D+ L ++ + D K Sbjct: 194 CQLNNIAYVTDPTNKDVSLTRRNYLRHLINDVIPAKNNQSRSPYLLIRKSELIDSHRKCL 253 Query: 232 NAVAMLIPKYLT----VHMRSIIAISQDI----LNIDSTLL---------FYLLRVSAAI 274 ML K + + +I + + + L +L R+ Sbjct: 254 EFATMLENKAMALSNSLQRNGLIREYPGLGSLWVKLPRQCLDHTNGIVTSRFLYRILHPY 313 Query: 275 CGGQISLPGYRSMERVML-----FLKSGKRGCVSIG--RVVIDRRANF------LWITR- 320 + Y +ER ++ FL G+ G + +V + N + I R Sbjct: 314 STLKHYHWAYAKLERQLIPRITSFLDQGESGTFKLTMMNLVFEVTNNTSSEYVPIHIYRC 373 Query: 321 --AVRNLPTL--ILYPEETTVWDGRYQFQNLSDS 350 ++ P + +L E ++D R+ + S++ Sbjct: 374 PITTKDWPAVQEVLTMGEWKLFDSRFWLRATSNT 407 >gi|283955056|ref|ZP_06372559.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp. jejuni 414] gi|283793423|gb|EFC32189.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp. jejuni 414] Length = 321 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 12/215 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + SL+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIK--YAPKFQSNFEKKARDFRYDFFEKICFEQDYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGSGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + D SN ++++ R +R+ + + + +K+ Sbjct: 170 YFHDESNENEKYFRNYIRKKFSNAFVSEFHQGLKR 204 >gi|170078528|ref|YP_001735166.1| metallothionein [Synechococcus sp. PCC 7002] gi|169886197|gb|ACA99910.1| metallothionein [Synechococcus sp. PCC 7002] Length = 342 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 124/320 (38%), Gaps = 16/320 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +++AVSGG DS+ L + + + + H ++ +V Sbjct: 20 LPAGAKLIMAVSGGQDSVCLSRLMLDLQ---RHWQWSLAIAHCHHGW-PGDEEIAAHVQT 75 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++ ++ + +S P+T AAR RY ++ A+ ++ ++T HT D+ ET+ Sbjct: 76 LGAQWQLPFYLCRAVSSLPET--ENAARRWRYETLTHLAEQLDQAYVVTGHTQSDRAETL 133 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G+G + + + + RP L R++ F Q N+ C DP N Sbjct: 134 IYNLVRGAGTAGLGS--LTERRSLSNKVKLVRPLLTITRQETGEFCRQFNLLVCFDPFNQ 191 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAI 252 RF+R ++R+ + K + + N+ + + +YL + + Sbjct: 192 QMRFKRNQIRQQILPHLRTLNTQADKHLAQTALILQDENDYLEAIAQQYLQQALTPQQHL 251 Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVSIGRVVI 309 + +L + L ++R +P + + + + +G R G++ + Sbjct: 252 HRLVLQPLHIALQRRIIRQYLQQV--LPKMPTFAQISATVELIHGCNGDRLSTLPGKIQL 309 Query: 310 DRRANFLWITRAVRNLPTLI 329 +L NLP Sbjct: 310 QVMGEWLVPEALKSNLPKST 329 >gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1] Length = 483 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 125/353 (35%), Gaps = 60/353 (16%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F ++ R F + P + VA+SGG DSM L L K + AI++DH Sbjct: 7 LFRKSLD--RLF--NGNAPKKVAVALSGGPDSMLLTWLLSQC-------KFEIYAITIDH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115 R A E V + + H + S + ARE RY +++ Sbjct: 56 KYRPEASREALSVYERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCY 115 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-------------YDLN 162 + ++ H DDQLET R Q + + G+ + + Sbjct: 116 DKDIPVLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQ 175 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDL------HA 215 + I RPF ++DI NI++ DP+N D R +R + DI H+ Sbjct: 176 VRILRPFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHS 235 Query: 216 LYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHM---------------RSIIAISQDILN 258 YL + K Q D K M + + + + + L+ Sbjct: 236 PYLLIDKSQLIDSHTKCLEFATMFENRAMALSESLQSSGLIKEFPALGSLQVKFPRQCLD 295 Query: 259 IDSTL--LFYLLRVSAAICGGQISLPGYRSMERVML-----FLKSGKRGCVSI 304 + + +L R+ + Y +ER ++ FL+ G+ G + Sbjct: 296 QTNGIVTSRFLYRILHPYSTLKHYHWAYAKLERQLIPRITKFLEQGQSGTFKL 348 >gi|289548617|ref|YP_003473605.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484] gi|289182234|gb|ADC89478.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484] Length = 298 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 126/305 (41%), Gaps = 26/305 (8%) Query: 3 LSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISV 58 +S + V F R L + +LVA SGG+DS+ + ++L + F + + V Sbjct: 1 MSLLRKVVFLQRKLQLIPPGSSLLVAFSGGADSV---ALVLALLELKGFIGWKRILLMHV 57 Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113 +H +R A+ + + + R ++ V K + L + ARE RY L+ E Sbjct: 58 NHMIRGGEAERDELFCREFAQRHQLPLLVERIDIPSIAEKKKENLESIAREERYRLLREV 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 LI+TAH +D +ETV + R +G+ + + RP + Sbjct: 118 KDREGLDLIVTAHHLNDLVETVLLWLVRGCGTEGL-------MGFDEREGDVVRPLFLVK 170 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 +E+I +F+ + SW ED +N D + R R+R V + L F++ +++ Sbjct: 171 KEEIVAFVKGKGESWVEDSTNMDVGYARNRIRHRV----IPELKKINPSFEENFLRLRAL 226 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 + ++ + Q+ L L R G + +R +E+++ Sbjct: 227 LKDEDSYLREKTKEALALVQQEGRKAFLKLHPALQRRVVMEIYGVRN---FRLVEQIINS 283 Query: 294 LKSGK 298 +K G+ Sbjct: 284 IKKGE 288 >gi|123969392|ref|YP_001010250.1| ATPase [Prochlorococcus marinus str. AS9601] gi|123199502|gb|ABM71143.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. AS9601] Length = 336 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 18/253 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++IL++VSGG DSM LL ++ + + S DH E + + D Sbjct: 29 IPKGSNILISVSGGQDSMALLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALELKD 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128 C I+ S + +K ARE RY + E AK + ++T HT Sbjct: 86 YCEDKNISFSFD--QANKEDISSEEKAREWRYKKLCERAKTLLSTNQEKHNIYLLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L + +++ RP L RED + F + I Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLIENQIYLIRPILIFSREDTKQFCNEMKIPV 201 Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N+D + +R VR+ + I ++ F K NN L + + Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPILEVIYPGCSERINNFSQKMSKYNNERNDL-SELAYFY 260 Query: 246 MRSIIAISQDILN 258 + I I +++LN Sbjct: 261 CKDIKGIDRNLLN 273 >gi|317052478|ref|YP_004113594.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5] gi|316947562|gb|ADU67038.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5] Length = 442 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 101/281 (35%), Gaps = 38/281 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 +VAVSGG DSM LL L + + K+ ++H LR E ++ + R V C RL Sbjct: 26 VVAVSGGVDSMVLLHLLAKIQPEL---KLNLVVAHLEHGLRGEESRADARLVIQTCERLG 82 Query: 82 IAHSVVSWKN---SKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQLETV 135 I + AR RY + A I TA T DD LE + Sbjct: 83 IPCYARFVDEHFWQRQAGNFQDKARALRYTFFRQVGTDFFSGRAFAIATAMTQDDCLEKI 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +M R + G DT RP +E + ++ + ISW ED SN Sbjct: 143 FMDILRGRSLLGSLSHQQPDT---------LRPLRTISKEALIAYATGQQISWREDTSNH 193 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D + R RVR + + + + +++T + +S+ Sbjct: 194 QDSYLRNRVRNQLIPLLREEF---------------DFQKSIQSRFITDMEEGMTFLSEQ 238 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + L LLR + L + + + FL+ Sbjct: 239 L----DALFASLLREGSLRVSDLRQLASFPQRQICLRFLQH 275 >gi|83319710|ref|YP_424013.1| hypothetical protein MCAP_0014 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283596|gb|ABC01528.1| conserved hypothetical protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 401 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 123/257 (47%), Gaps = 16/257 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ L+A+SGG DS+ LL + ++ ++ V++ R + ++ + V Sbjct: 5 NIDTNKKYLLAISGGPDSVFLLCNIVKIIDSKN-----LVVCHVNYNFRSDSINDQKIVI 59 Query: 75 DVCSRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++C + + +++ + + AR RY ++ AK ++ AH F+D + Sbjct: 60 NLCKKFDLKLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYQIYNLLVAHNFNDLI 119 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET ++ QR+ GL T+ + +L + RP L ++ +I +L IS+ D Sbjct: 120 ETYLLQLQRNNLVDYYGL----KTVSHYKDLVVYRPLLDIKKSEILDYLKTNQISYAIDS 175 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251 +NTD +++R ++R I ++++ +K D+ K + ++ YL ++ + Sbjct: 176 TNTDIKYQRNKIR----SIIDESIFIDIKNQIDIDNKKLETIKKIVNNYLEHNLTNKELI 231 Query: 252 ISQDILNIDSTLLFYLL 268 +++++ ++S ++ ++ Sbjct: 232 LNKELFLLESNIIKRII 248 >gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001] gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001] Length = 342 Score = 177 bits (448), Expect = 5e-42, Method: Composition-based stats. Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 13/299 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ A G+ +VDH LR + +E V + +RL + Sbjct: 28 LLAVSGGPDSTALMHAAAR------SGRAGLRVATVDHALRPDSAEEAAEVGRLAARLGL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H+ ++W + + + A AR ARY L+++HA I A L++TAHT DDQ ETV MR Sbjct: 82 PHATLTWDVPRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQAETVLMRLIAG 141 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+GM + + RPFL + D+ ++ + + DPSN D+RF R Sbjct: 142 SGP--SGLAGMPVERPLAPGIRLVRPFLDLPKADLVAYCEAHRLPFLRDPSNADERFARS 199 Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+RR + + L + + A+++ + + + + Sbjct: 200 RLRRLLPLLAEEGLSAARLGRLAARTARDDAALTQRAAIVLSEISEPDGDRLRLDGRRLY 259 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 ++ +L + + P +ER+ ++ GR + L Sbjct: 260 REPEAIVLRVLGTALDRIVSGFAEPVPERLERLEALAFEALLPALAEGRALRRTLRGVL 318 >gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614] gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614] Length = 321 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 76/267 (28%), Positives = 112/267 (41%), Gaps = 16/267 (5%) Query: 1 MFLSP-IESVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 M L P I +VR VR + ++VA SGG+DS+ LL A +V R G + Sbjct: 1 MSLHPAIAAVRLAVRRALAHVDPGRTVVVACSGGADSLALLAA--TVFEGRRAG-WRVVG 57 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISEHA 114 +VDH L+ + D +V + L +V + G AAAR+ARYA++ + A Sbjct: 58 ATVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEAAGQGPEAAARQARYAVLDQLA 117 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + +A ++ HT DDQ ETV + R G L+GM + RP L R Sbjct: 118 ERFDADAVLLGHTRDDQAETVLLGLARGSG--GRSLAGMRRSF-----DRFVRPLLDLSR 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 D + I + DP N D F RVRVRR V + L + + A Sbjct: 171 ADTATACQVAGIEFWSDPHNEDPAFTRVRVRRSVLPVLEDQLGPGVAEALARTADQLRAD 230 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDS 261 L+ + + + D L + Sbjct: 231 MDLLDDAAEAAYQRLRDLPVDGLLAEP 257 >gi|220909149|ref|YP_002484460.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425] gi|219865760|gb|ACL46099.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425] Length = 336 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 122/314 (38%), Gaps = 18/314 (5%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L P +LVAVSGG DS+ + +L R + + DH R + + Sbjct: 27 RHLFTPGQRLLVAVSGGQDSL---CLIKLLLDLRPHWHWELAIGHCDHRWRSDSAANAAH 83 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + + ++ + P+T A +R RY +++E A+T N T ++T HT D+ Sbjct: 84 VQTLAEQWQLPFW-LQIAAEIPRT--EAQSRTWRYEVLTEIAQTQNYTAVVTGHTASDRA 140 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R G L + ++ + RP L R F ++N+ ED Sbjct: 141 ETLLFNLLRGSGTDG--LQALVWQRSLATDIQLVRPLLGLTRTQTGDFCREQNLPIWEDS 198 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF-QDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D ++ R R+R+ + ++++ + V L + + + Sbjct: 199 TNQDYQYRRNRIRQELIPYLQTHFNPQVEQAIAQTAELLQAEVDYLEAQAQALLAQVSTM 258 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQ-----ISLPGYRSMERVMLFLKSGKRGCV--SI 304 + + LN S L L + + G P + +E+V+ + + Sbjct: 259 LPERGLNRSS-LQAVPLALQRRVVKGFLQTHLPHAPNFDQVEKVVALITAANGSRTDPFP 317 Query: 305 GRVVIDRRANFLWI 318 G + ++++ Sbjct: 318 GGAIATVSDAWIYL 331 >gi|33862207|ref|NP_893768.1| hypothetical protein PMM1651 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61216598|sp|Q7UZL1|TILS_PROMP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33634425|emb|CAE20110.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 336 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 16/252 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + A++L+AVSGG DSM LL ++ + + ++ + DH + + + Sbjct: 29 IPDGANLLIAVSGGQDSMALLNLINDMKTQHNWF---VNVWHGDHQWHKKSAKYALELKS 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTF 128 C++ I+ + +K AR+ RY +SE A + ++T HT Sbjct: 86 YCNKKNISFFFD--QANKNNISSEEKARDWRYKKLSERANQLLIENQKEIDIYLLTGHTN 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L ++++ RP L RED + F +NI Sbjct: 144 TDNAETFLLNLARGS--NYAGLSNINKKRLLKHHIFLIRPLLIFSREDTKKFCQLQNIPI 201 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHM 246 EDP+N D +R VR+ + I K+ K++N + K +++ Sbjct: 202 WEDPTNCDLTIKRNIVRKEIIPILETMYPGCSKRINSFAEKMSNYKNEQNDLSKLASLYC 261 Query: 247 RSIIAISQDILN 258 I + +++LN Sbjct: 262 EDAIGVKRELLN 273 >gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC] gi|61216617|sp|Q822B9|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC] Length = 317 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 19/260 (7%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 + F SL L+A+SGGSDS+ LL L S + F+A+ VDH RE++ Sbjct: 12 LEVFFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVAFTAVHVDHGWRESSYR 64 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E + C I + + AAR RY L + K N I AH Sbjct: 65 EAEELKIRCEEEGIPILIDHVPPEYRTSRDPENAARRYRYTLFHKVCKEQNLAGIFLAHH 124 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ ETV R + L GM Y+ ++ + RP L ++ I + L N+ Sbjct: 125 ANDQAETVLKRLLEGASL--SNLKGMSPKTSYE-DIPLFRPLLHIPKQIIINVLDAENVP 181 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +D +NTD+R+ R R+R+ + L + ++L + + Sbjct: 182 CVQDITNTDERYLRARMRKKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAEPFLE 241 Query: 240 KYLTVHMRSIIAISQDILNI 259 + I I Q ++ Sbjct: 242 NMRKENTTWSIEIPQVLIEQ 261 >gi|307748319|gb|ADN91589.1| tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni M1] gi|315930961|gb|EFV09936.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 327] Length = 321 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDKDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|21909546|ref|NP_663814.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315] gi|21903726|gb|AAM78617.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315] Length = 395 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 24/269 (8%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL L+ KI+ V+H R + E Y+ + I V +++ Sbjct: 1 MNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAKKHDIPIYVSNFEGI 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 AAR+ RYA N + ++TAH DDQ ET+ MR R + LSG Sbjct: 58 FS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMRLIRGSRLR--HLSG 111 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N + RPFL ++D+ I ED SN + F R RVR Sbjct: 112 IKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELSFLRNRVRNN----Y 160 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 L L + +F ++ ++L + + + ++ ++LL+ Sbjct: 161 LPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNEQSKSIQYFLLQ--- 217 Query: 273 AICGGQISL-PGYRSMERVMLFLKSGKRG 300 G L +++ +++ K+G Sbjct: 218 DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 246 >gi|121613548|ref|YP_001001102.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|148925625|ref|ZP_01809313.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp. jejuni CG8486] gi|157415678|ref|YP_001482934.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni 81116] gi|167005997|ref|ZP_02271755.1| hypothetical protein Cjejjejuni_07600 [Campylobacter jejuni subsp. jejuni 81-176] gi|87249823|gb|EAQ72782.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|145845635|gb|EDK22726.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp. jejuni CG8486] gi|157386642|gb|ABV52957.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni 81116] Length = 321 Score = 176 bits (447), Expect = 6e-42, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|153951323|ref|YP_001398742.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei 269.97] gi|152938769|gb|ABS43510.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei 269.97] Length = 321 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 16/217 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + SL+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + + Q+ AR+ RY + + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIK--YAPEFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRN 185 +DQ E M+ R G GL+ + Y+ N + RP L +++I SFL +++ Sbjct: 113 LNDQFEWFLMQLSR-----GAGLAEILGMQEYEQRSNYTLLRPLLFISKDEISSFLKEKD 167 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 I + D SN ++++ R +R+ + + + +K+ Sbjct: 168 IFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR 204 >gi|255530408|ref|YP_003090780.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366] gi|255343392|gb|ACU02718.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366] Length = 465 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 125/342 (36%), Gaps = 41/342 (11%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71 +L P IL+AVSGG DS+ + F + LR ++ + Sbjct: 14 HALFQPGDKILLAVSGGKDSVLMAHLFK-------LSGFNFGIAHCNFNLRGAESQRDEA 66 Query: 72 YVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +V + + + + +V + ++ + AAR RY E I A Sbjct: 67 FVKMLAASMDVPFHLVHFHTKAYAARHKVSTQMAARTLRYQWFEEVRLAQGYKAIALAQH 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +D +ETV + R G G++GM + W+ RP L DI + + + Sbjct: 127 QNDAIETVLLNLVR-----GTGIAGMHGILPKR--GWLIRPLLFLSGGDIAALVKSFELD 179 Query: 188 WCEDPSNTDDRFERVRVRRFV------RDIDLHALYL-KMKKFQDLRVKVNNAVAMLIPK 240 + ED SN + R ++R V + +L + M++F + + + VA L K Sbjct: 180 YVEDSSNKSTDYVRNKLRLKVIPYLKEMNPNLELTFENNMQRFAETELVLQTTVAALKKK 239 Query: 241 YLTVHMRS--IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 + L LLF LLR L L +SG Sbjct: 240 LFAEKEGKYYLAMTKVKELKPQRLLLFELLRPFNFTESVVDELIAS-------LNKQSGT 292 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTL---ILYPEETTV 337 + R+V+DR L ++ P L +++P++ V Sbjct: 293 SFYSNSHRIVVDR--ASLILSSRSGGQPGLSHQLIHPQDELV 332 >gi|283768240|ref|ZP_06341153.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219] gi|283105117|gb|EFC06488.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219] Length = 400 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 23/253 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 LVAVS G DSM L+ + + V++ R+ A +E ++ Sbjct: 6 GKWLVAVSTGPDSMYLVHQCLEL-------GMDIQIAHVNYHHRKQAAEEEAFIRFFAEE 58 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +I V + KP+ A ARE RY ++ + ++ AH +D LET M+ Sbjct: 59 NQIPLHVRN-DAFKPKGNFEAEAREWRYTFFAKIVRKEQLKGVLVAHQQEDLLETFLMQE 117 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 ++ GL + + RP L R+ +I +L + + D +N +D++ Sbjct: 118 EKRLEPDYFGLKERTMM----QGISVVRPLLTMRKAEILRYLDEHQYRYFIDHTNLEDKY 173 Query: 200 ERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRS 248 R ++R F+R+ L + + Q+ R +V + + + Y + Sbjct: 174 RRNQIRHSQVETMTDFMREALLQEINRRNSILQERRHRVAKYIQKGKVSLKLYRNLEKED 233 Query: 249 IIAISQDILNIDS 261 ++ + +L+ Sbjct: 234 RLSTLRQLLDQKK 246 >gi|269115197|ref|YP_003302960.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis] gi|268322822|emb|CAX37557.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis ATCC 23114] Length = 311 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 17/252 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ VSGG DSM LL L S+ V++ R + + VS C+ Sbjct: 26 KKFLIGVSGGPDSMWLLNLLKSL---------NIVVAHVNYNKRYDSNYDESLVSRFCAD 76 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I ++S N A AR+ RY E +K I+ AH DD LE+ M+ Sbjct: 77 NNIPLEILSLHNKYSSGNFQAIARKERYDFYFEISKKYQCDYILLAHQKDDFLESSIMQE 136 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDR 198 + G+ + + + N+ I RP L +++I F + +I + D +N + Sbjct: 137 NSNRKPLFWGIKQLS---ILNNNV-IFRPMLNLWTKQEIIDFCNEYSILFATDYTNAETH 192 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI--IAISQDI 256 + R ++R ++ +D K + F + ++ + ++ + + ++ Sbjct: 193 YTRNKIRSNLKKLDPEQKQNKYQFFVNKNIENEHIEKQVLESFENWKNNQFNVDKLDKNF 252 Query: 257 LNIDSTLLFYLL 268 + ID LLFY L Sbjct: 253 VYID-QLLFYTL 263 >gi|110834021|ref|YP_692880.1| cell cycle protein MesJ [Alcanivorax borkumensis SK2] gi|110647132|emb|CAL16608.1| cell cycle protein MesJ, putative [Alcanivorax borkumensis SK2] Length = 433 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 27/355 (7%) Query: 7 ESVRFFVR--SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 ++ RF R +L+A+SGG +L L ++ + A+ +DH L+ Sbjct: 3 DAARFSQRLVEQAPDGPLLLALSGGL-----DSSLLLHLLVQAGLAPRLCAVHIDHQLQA 57 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ R+ + + IA ++ S + GL A AR+ARY ++ A+ ATL++ Sbjct: 58 DSRAWSRFCGALADKYDIALTIEPVTVSMAE-GLEAGARDARYQVLLPLARAKGATLVL- 115 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH +DQ ETV R R +G+ G + + RP L + + + + Sbjct: 116 AHHRNDQAETVLFRLLRGAGVQGLSAMGQHSQQ---QGVTLWRPLLGLGQHVLEKWGAEL 172 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP--KYL 242 +++W EDPSN D R +R + L AL + + +A + Sbjct: 173 SLNWLEDPSNQDQSLRRNYLRHTI----LPALRERWPGADATLARAAEHMAEANQLLTEV 228 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLR----VSAAICGGQISLPGYRSMERV--MLFLKS 296 V + I +S +L + L R + + + S P +E++ + Sbjct: 229 AVQDAASIGVSGAVLPLPRLAELSLARQRNVLRWWLQKNRASAPSAAVLEQIRVLHLAAE 288 Query: 297 GKRGCVSIGRVVIDRRANFLWITR--AVRNLPTLILYPEETTVWD-GRYQFQNLS 348 + V G + L R A + IL+PE D R+++ + Sbjct: 289 DSQARVEWGEYAVRVHQGALHFARREAFQPWQGDILWPEGEAPPDLPRWRWTQHA 343 >gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted) [Schizosaccharomyces pombe 972h-] gi|1723551|sp|Q10441|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted) [Schizosaccharomyces pombe] Length = 456 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 147/362 (40%), Gaps = 31/362 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +R V + +AVSGG DSM LL +F A VDH +R+ + +E Sbjct: 16 IRRRVGHRRLGIAVSGGVDSM-LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQ 74 Query: 73 VSDVCSRLRIA--HSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +R+ I + ++W N T L ARE RY +++ T N I TAH Sbjct: 75 TIWNLNRMLIPNVYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHA 134 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSF 180 +DQ ET++MR R GL M D+I N+ + RP L + I + Sbjct: 135 NDQAETIFMRLLRRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNT 194 Query: 181 LLQRNISWCEDPSNTDDRFE-RVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAM 236 Q I+W EDP+N D R +RRF+ + + A L FQ L+V ++N V Sbjct: 195 AKQHGIAWEEDPTNADINLTPRNAIRRFLNQHAALTVEATKLATA-FQSLQVNIDNKVDE 253 Query: 237 LIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 ++ + + + + S++ L S L L + S+ + Sbjct: 254 ILKDNIVSYHQPSGTLSLCFSKNELKKHSNLTKEELLLRCLTLTTSCRQIKRSSVVSLCN 313 Query: 293 FLKSGKR----GCVSIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQ 343 + GK+ C+ + D L I+R A T+ + P+ +WD R+ Sbjct: 314 SVFDGKKLTIAKCLLTSSSIKDDTKLQLQISRQPFSKAELKKKTITINPDRYVLWDHRFW 373 Query: 344 FQ 345 + Sbjct: 374 IK 375 >gi|86151954|ref|ZP_01070167.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315124890|ref|YP_004066894.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841062|gb|EAQ58311.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315018612|gb|ADT66705.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 321 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|329896365|ref|ZP_08271464.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088] gi|328921785|gb|EGG29156.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088] Length = 448 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 27/328 (8%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V F+ + L+ VSGG+DS+ L+ + ++ + I +DH L + + Sbjct: 10 VEQFLLRYIDAPRWLLGVSGGADSVALMAFVRALGDAHDIPP--VTVIYIDHGLHPDSAN 67 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V V +L A S + GL AAR ARY + ++MTAH Sbjct: 68 WGVLVERVSKQLSFAFEARSVVVVESGGGLEEAARAARYRAFEDLICEQ--DVLMTAHHQ 125 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLET MR+ R +G L M + L + RP L R D+ + Sbjct: 126 DDQLETFLMRAFRGAGPEG--LRSMLPERSLGVGL-LIRPLLGVARNDLVQIATAIAPDY 182 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---PKYLTVH 245 DPSN D R++R +R+ + + ++ V V ++ +L K T+ Sbjct: 183 VLDPSNLDTRYDRGFLRQELVPLIR-------ARWPQAAVSVGRSIELLQAMWDKQNTLQ 235 Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSG 297 + +I A++ + L ++++ L +L+R A + P ++ R + +K+ Sbjct: 236 VPTIRALTGEPILEVPLGLNASALAHLVRAWLAELS--LYRPSKAQLDEFVRQLEGVKND 293 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNL 325 + + G + A ++ + N+ Sbjct: 294 QGPILQTGHYALRFYAGSIYCCSDIANV 321 >gi|163841946|ref|YP_001626351.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC 33209] gi|162955422|gb|ABY24937.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC 33209] Length = 363 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 18/320 (5%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + +R + L +LVA SGG DS+ + + AI VDH L+ Sbjct: 29 KARKILREALPELEATDLVLVACSGGPDSL---ALAAVAAFFNNRKSFRVGAIIVDHGLQ 85 Query: 64 ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + + + + G +AR ARY + A A + Sbjct: 86 DGSAAVAQQTAAKLRAFGLAPVEIRTVDVVAGPGGPEDSARVARYGALEAAAVEHGAVAV 145 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ E V + R + LSGM + + + RPFL RE+ + Sbjct: 146 LLGHTLDDQAEQVMLGLARGSGTR--SLSGMPARREFPGGVHL-RPFLPLSREETEAICA 202 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAV 234 ++ DPSN+D F R R+R V L + + ++ Sbjct: 203 VESLEPWRDPSNSDPGFTRSRIRHDVLPYLEVELGPGIAESFYRSASILAQDADFLDQLA 262 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG-QISLPGYRSMERVMLF 293 + + ++ ++ + L +L ++ GG Q S R+ E ++ Sbjct: 263 QAEFDRIAELAPEQVLLSEAELNQLAPALRHRVLALAVVHLGGTQPSFERLRAAEALLR- 321 Query: 294 LKSGKRGCVSIGRVVIDRRA 313 + G G V + V R Sbjct: 322 -RHGSAGPVQLAGKVSAYRQ 340 >gi|50365488|ref|YP_053913.1| lysidine synthetase [Mesoplasma florum L1] gi|61216500|sp|Q6F0E4|TILS_MESFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50364044|gb|AAT76029.1| lysidine synthetase [Mesoplasma florum L1] Length = 398 Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 134/322 (41%), Gaps = 21/322 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVAVSGG DSM +L L + + V++ RE + + + V D C + + Sbjct: 13 LVAVSGGPDSMFMLNELIKMNIK------EIVVCHVNYNFREDSWKDQKLVEDFCLKNNL 66 Query: 83 AHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +++ SK + + AR RY E +K N ++ AH +D +ET ++ Sbjct: 67 KLEKLIINQDYSKLKENFESWARNIRYDFFVEISKKYNIQNVLIAHNRNDLVETFLLQQD 126 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R K GL+ T Y + I RP L + +I L + NI++ D +N D +++ Sbjct: 127 RKGYVKHYGLN---KTSTYKE-ITIVRPMLNILKSEILKSLKEENIAFVIDSTNEDKKYK 182 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIAISQDILNI 259 R ++R + + + +KK K + + + Y+ +M + I++++ + Sbjct: 183 RNKIRANLSESTFNDFEETIKKLN----KKLEIINLEVNWYVNNNMSADELKINKNLQDQ 238 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYR--SMERVMLFLKSGKR--GCVSIGRVVIDRRANF 315 D + + + + R ++ + +K ++ ++IG I + Sbjct: 239 DLEFIQRTIYKWLEVIKKDFVIQNRRNKTIFEIAKNIKVSEKVFWEINIGEYSIIKDYEN 298 Query: 316 LWITRAVRNLPTLILYPEETTV 337 L+I P IL + + Sbjct: 299 LFIIETKAIQPKTILIKSKEDL 320 >gi|261855736|ref|YP_003263019.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2] gi|261836205|gb|ACX95972.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2] Length = 444 Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 39/339 (11%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL P +++A SGG+DS+G L+ LH+ + + +S+DH + + + Sbjct: 9 SLPKPLKVVLASSGGADSLGALVWLHNQYQQGVID--EITVVSIDHQIHPDSAEWSARAC 66 Query: 75 DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHA----KTINATLIMTAH 126 S I + Q L + AR ARY + + + +++TAH Sbjct: 67 QQASFFSIESHCIKIDVPTRGIHGQHSLESRARWARYEALRSWLYRRYQPEDEPVLVTAH 126 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DQ+ET + + R GLS M + W RPFL+ R+D+R F + Sbjct: 127 HLEDQVETFLLAALRGSGA--AGLSAMPALTRFGAG-WHWRPFLQMPRDDLRQFAASLPL 183 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +DPSN D ++R +R + + + + + +A+L Sbjct: 184 IPVDDPSNQDLSYDRNYLRAEILPRIQSRWPQALVSLGEAARQSGDDLALL--------- 234 Query: 247 RSIIAISQDILNIDSTLLFYLLRVS---------AAICGGQISLPGYRSMERVMLFLKS- 296 S+ AI ++ +++ L LL ++ I +P + + LK+ Sbjct: 235 ESLAAIDGNLESLERLPLSQLLALAPSRQANVLRTWIKRHGALMPPKARLIEFLRQLKTA 294 Query: 297 --GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333 + ++ G +I R + LW +P + PE Sbjct: 295 EPDQHPELAWGDWLISRYRDELWW-----RIPPDLQAPE 328 >gi|254564206|ref|YP_003071301.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens DM4] gi|254271484|emb|CAX27499.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens DM4] Length = 342 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 91/317 (28%), Positives = 138/317 (43%), Gaps = 21/317 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F+ PA L+AVSGG DS L+ A DR F +VDH LR + Sbjct: 15 ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDR------FRVATVDHALRPGSA 66 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 DE V + + L + H++++W + + + A+AR ARY L+++HA I LI+TAHT Sbjct: 67 DEALGVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAGRIGTGLILTAHT 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV MR GL+GM D + + RPFL + D+ ++ + Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + DPSNTD+RF R R L L + L V+ A L + V Sbjct: 185 FLRDPSNTDERFTRAR--LRRLLPLLAEEGLNAARLARLAVRAGRDDAALRQRAEAVR-S 241 Query: 248 SIIAISQDILNIDSTLLFY-----LLRV---SAAICGGQISLPGYRSMERVMLFLKSGKR 299 I+ + L +D L +LRV + P + +ER+ + Sbjct: 242 EIMRTDKGGLRLDGQRLRREPCAIVLRVVDAALDTVAPVHEAPVPKRLERLEALVLDALL 301 Query: 300 GCVSIGRVVIDRRANFL 316 ++ GR + L Sbjct: 302 PALAEGRALRRTLRGVL 318 >gi|260495550|ref|ZP_05815675.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_33] gi|260196892|gb|EEW94414.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Fusobacterium sp. 3_1_33] Length = 448 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + +F K + ++H LR A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGKDAVSDENFSFEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY SE K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILDYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFK 217 >gi|256028355|ref|ZP_05442189.1| cell cycle protein MesJ [Fusobacterium sp. D11] gi|289766281|ref|ZP_06525659.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11] gi|289717836|gb|EFD81848.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11] Length = 448 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 I+V SGG DS+ L+ L + +F K + ++H LR A + + + + Sbjct: 23 IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGKDAVSDENFSFEYAKKN 79 Query: 81 RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + V + L RE RY S+ K + A I TAH DDQ+ET Sbjct: 80 NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSKIYKKVGANKIATAHNKDDQIETFL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R R + +G+ + N I RP ++DI +L + I + D +N + Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILDYLNKNEIQYKIDKTNFE 192 Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221 + F R +R + +K K Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFK 217 >gi|325124579|gb|ADY84102.1| cell cycle protein [Acinetobacter calcoaceticus PHEA-2] Length = 417 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 17/273 (6%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K I +DH L+ + + V+ + L I +++ + + L A AR+ARY Sbjct: 8 KIRIIYIDHQLQSKSAEWGELVAKQATHLNIPYTIQKVQVTD--GNLEAQARQARYQAYL 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +H + +++ AH DQ ETV +R G+ +I + +++ I RPFL Sbjct: 66 QHLQAN--EILVLAHHQQDQAETVILRLLSGTGVDGLAAM---QSIDHRVDMTIWRPFLD 120 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 RE I + Q I + DP+N D ++R R + L + KM++ + Sbjct: 121 LTREQIAEWTTQLEIEYVVDPTNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLM 179 Query: 232 NAVAMLIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + ++ + L +++ +L + S LL S + G P + + Sbjct: 180 QDASEILEEVLKADLQNCGTDECLDLTQLLKLSSARQRQLL--SVWMKGDGQYRPAFEMV 237 Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 ER+ ++ KS + + + R + L+ Sbjct: 238 ERLKNEVIDSKSDAQAALHWNQFYYVRYQHHLY 270 >gi|207722907|ref|YP_002253341.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] gi|206588091|emb|CAQ18671.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 462 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 12/327 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS L+ + D + ++ A+ V H L+ Sbjct: 11 VAACAAFVVSGGRPT-VAVALSGGRDSAA-LLHAAAAWRDAAGAPVRLVALHVHHGLQAD 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + + V + S G+ AAREARYA + ATL++T Sbjct: 69 ADAWEAACARMAAAVDVECHVRRVRVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M + + RP+L R DI +++ Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYVRTH 184 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++W EDPSN D R+ R +R + + H A M + + + + L Sbjct: 185 ALAWVEDPSNHDARYARNALRPLLAGMAGHFPAYRASMARSAAHLAEAAALIDEIAQADL 244 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301 + + D+ + +LR A G + + +L ++ C Sbjct: 245 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 304 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328 V + + R WI V P + Sbjct: 305 VRLPGAQVRRYRAQAWI--EVAGQPEV 329 >gi|283956826|ref|ZP_06374300.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336] gi|283791687|gb|EFC30482.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336] Length = 321 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 107/280 (38%), Gaps = 24/280 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + +L+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILALLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E ++ + + K Q+ AR+ RY + + ++ AH Sbjct: 55 LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQ E M+ R + C+ N + RP L +++I SFL +++I Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + D SN ++++ R +R+ + + + +K+ + + L ++ Sbjct: 170 YFYDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR----------SFSYLNEDRKKLYDF 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 I Q +L L+ + + G +S + + Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257 >gi|77457345|ref|YP_346850.1| hypothetical protein Pfl01_1118 [Pseudomonas fluorescens Pf0-1] gi|123605783|sp|Q3KH95|TILS_PSEPF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|77381348|gb|ABA72861.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens Pf0-1] Length = 442 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 20/317 (6%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++ + +H +A SGG DS + ++ SAI V H L+ A + Sbjct: 16 LKPWLGASHWRIAFSGGLDSTV--LLHLLAKLAKNQSIPALSAIHVHHGLQAAADAWPAH 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 VC L + V + +P + AAR+ARYA S A T +++T DDQ Sbjct: 74 CQAVCEELAVPLQVQRVQV-QPGASVERAARDARYAAFS--AATQANDVLLTGQHRDDQA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ R R +G LSGM T + RP L R ++ ++ + W EDP Sbjct: 131 ETLLFRLLRGAGVRG--LSGMPATRALGQGS-LVRPLLDVTRAELEAYARDHGLRWIEDP 187 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D +F R +R + + + + A +L ++ + Sbjct: 188 SNQDRQFSRNYLRHQIMPLLIGRWPQAHASMARSAAHLREAQGLLDELAQIDLTQASLPS 247 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGC 301 + + S + ++S A +S + R+ + + Sbjct: 248 EFEWSGLPSLEFAAIAKLSDARQRNALS-HWLEPLTRLPDTDHWSGWVDVRDAGNDASPI 306 Query: 302 VSIGRVVIDRRANFLWI 318 + + R A LW Sbjct: 307 WRLADGELHRSAGRLWW 323 >gi|297588663|ref|ZP_06947306.1| PP-loop family protein [Finegoldia magna ATCC 53516] gi|297574036|gb|EFH92757.1| PP-loop family protein [Finegoldia magna ATCC 53516] Length = 451 Score = 175 bits (445), Expect = 1e-41, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 14/237 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 IL+ +SGG+DS+ L L+ + D F + ++H R+TA + + ++ Sbjct: 19 KNDKILIGLSGGADSVFLFNVLYQLKDDLDF---EIKTCHINHSYRDTAIRDENFSREIS 75 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + L + R RY +E ++ I AH DDQ+E Sbjct: 76 EEKNIQFFSKKVDMKQFSLDNSISLEDSGRILRYNCFNEILESEKLNKIAVAHHLDDQVE 135 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T ++ R G L G+ N I RP L + +I ++L + NI + D + Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YRNKDIIRPLLDVSKSEILTYLDENNIEYVTDET 188 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N +R ++R + + + + + +I + ++ Sbjct: 189 NFVADVQRNKIRLEMLPYIQENFNCSINESIYRTINILKDSKEIIDDVTILKYEKLV 245 >gi|187918640|ref|YP_001884206.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH] gi|119861488|gb|AAX17283.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH] Length = 439 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 29/318 (9%) Query: 1 MF----LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 MF ++ IES F+ ++ + +VA SGG+DS LL+ L L++ A Sbjct: 2 MFWNDIVTKIES--FYFKNSLPKGKSIVAFSGGADSTTLLLGLKEYLNN------NIVAF 53 Query: 57 SVDHCLRETAKD--EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYA 108 H +R + E+ ++ C+ I + + ++S+ + AR+ RY Sbjct: 54 YFAHYIRPEFEQNLEIEHIKKFCNFHNITFQIKRCSVDIKRESSQLGMSVEELARKYRYN 113 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + E K A I AH +DQ ET+ MR + G + + +N I RP Sbjct: 114 ALLEALKENEARYIALAHNKNDQFETLVMRFFQGSFLDGF-------SGIPIINGNIIRP 166 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L RE+I FL NI + D +N +D + R R+R + + + + + Sbjct: 167 LLEVSREEIEQFLSLNNIVYFVDSTNHEDLYLRNRIRNNLMPVIGKIFKGYERGLERISD 226 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRS 286 ++ V K + + S D + S + + R G +S Y + Sbjct: 227 FSSDLVDYFDKKDFLPYSKGNYYYSFDAMTFFSLPKYLVFRSIFKILNLEGIVSNLSYGA 286 Query: 287 MERVMLFLKSGKRGCVSI 304 + + + KR + + Sbjct: 287 LNEIFRVNPANKRSKILL 304 >gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17] gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17] Length = 330 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 11/306 (3%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 PA +L+AVSGG DS + ++ + + + +VDH LR A +E+R V++ C Sbjct: 28 PAPLLLAVSGGPDS------MAMLMLAAAAFPGRIAVATVDHGLRPEAAEELRMVAEHCR 81 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + H + L A AREARYAL+++ A+ I A I+TAH DDQ ET MR Sbjct: 82 ILGVPHHGLRPATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQAETFLMR 141 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + R G+ + + RP L RR ++R + + + +DP+N D R Sbjct: 142 AARGAGLSGLSG---VRVRTEINGVPVLRPLLDWRRAELRQIVRRAEAPFVDDPANHDPR 198 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 +R R R+ + + + + L + A + + + + Sbjct: 199 HDRTRFRQLLGANEWLGVAQMARAAAQLAEADADLRATVDWLWQERAQIDDDNVRIAAAD 258 Query: 259 IDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 + L L R + ++ P + + L + G + VI + + Sbjct: 259 LPRELGRRLARRAIGTVRQVATIENPAWSEGGNIEKLLDALAAGSRATQAGVIASVRSGV 318 Query: 317 WITRAV 322 W R Sbjct: 319 WRFRPA 324 >gi|210629984|ref|ZP_03296207.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279] gi|210160735|gb|EEA91706.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279] Length = 353 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 33/304 (10%) Query: 20 AHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKD-EVR 71 A +++ VSGG+DS LL+ + R +I + + V+H LR A D + Sbjct: 12 APVVLMVSGGADSTALLLMACTGALDIADGRGPARIARERLHVLHVNHHLRGEASDGDEA 71 Query: 72 YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTI--------NATLI 122 +V ++C+R + V L AAAR+ RYA + + + +A I Sbjct: 72 FVRELCAREGLPLCVEHASFADLGGQNLEAAARDVRYAAARRYVRELCAQTGAPRSAARI 131 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT D+ ET +M + + G+ + + I RP L D+ +L Sbjct: 132 LTAHTASDRAETFFMNAIKGSGAAGL-------SSIPRRRNIIVRPLLDMTHADLIRYLQ 184 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-------FQDLRVKVNNAVA 235 SW ED SN D + R VR + + + D ++ + Sbjct: 185 VAGQSWREDESNQDTGYLRNFVRHRLMPVAGERNANVARNVSAACDILGDEDAFMSQLAS 244 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + + +I + L + ++R++ G+ L R +E V+ + Sbjct: 245 TALRSCVRRRASGLIVLDVSRLAAAEVAIARRMVRLAVRELDGEARL-EMRHVEAVLSCV 303 Query: 295 KSGK 298 G+ Sbjct: 304 AMGE 307 >gi|57168991|ref|ZP_00368120.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|57019657|gb|EAL56346.1| conserved hypothetical protein [Campylobacter coli RM2228] Length = 321 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ + SL+ L+A S GSDS L L KI F + +++ R+ + Sbjct: 2 QIKDEILSLLKKGRNLLAFSYGSDSSALFHFLVQ-------KKIDFDLVMINYKTRKNSD 54 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 E + ++ + S K AR+ RY + N + ++ AH Sbjct: 55 LEEQKSKELALEFHKKIFIKSAPVIK--GNFEKEARDFRYDFFEKICLEQNYSNLILAHH 112 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DQLE M+ R + C+ N + RP L +++I S+L + +I Sbjct: 113 LNDQLEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFMSKDEILSYLKENDIF 169 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + +D SN ++++ R +R+ + + + +K+ Sbjct: 170 YFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR 204 >gi|115378573|ref|ZP_01465727.1| PP-loop family [Stigmatella aurantiaca DW4/3-1] gi|115364401|gb|EAU63482.1| PP-loop family [Stigmatella aurantiaca DW4/3-1] Length = 468 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%) Query: 4 SPIESVRFFVRSL--------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 P + R R+L + +L+AVSGG DS LL+ V R I Sbjct: 19 RPRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALLLGTALV---RERLGILVEV 75 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 ++DH LR A +EVR V + +R ++ V S K GL AREARYA +S+ Sbjct: 76 ATLDHGLRPEAMEEVRAVERLAARQKMICHVRSLHV-KEGPGLEVRAREARYAALSQLCS 134 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I TAHT DQ ET+ MR R + +G T + + RP L RE Sbjct: 135 ERKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTRE 187 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRV 228 + +FL ++ + DP N D RF R R+R V A+ + Sbjct: 188 QVEAFLGEQEEGFAVDPMNADPRFLRARIRHHVLPALTQAVGYPVTERLASFARLAAEDE 247 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + ++A L + A+ L + ++ A + ++E Sbjct: 248 ALLQSLAGAAWDRLRGSGEGLDAVGVRALELPLRRRVLARLLAEARA-----VVDAATLE 302 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 RV+ ++ G+ +S + + + R Sbjct: 303 RVLAAVEGGRSATLS-HGLQLRASGGLVRCVR 333 >gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens AM1] gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase, tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein [Methylobacterium extorquens AM1] Length = 342 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 13/299 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DS L+ A DR F +VDH LR + DE V + + L + Sbjct: 28 LLAVSGGPDSTALMHAAARAGRDR------FRVATVDHALRPGSADEALGVGRLATELGL 81 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 H++++W + + + A+AR ARY L+++HA I A LI+TAHT DDQ ETV MR Sbjct: 82 VHTILTWDAPRHGSRIQASARGARYRLLTDHAAGIGAGLILTAHTLDDQAETVLMRLIAG 141 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+GM + + + + RPFL + D+ ++ + + DPSNTD+RF R Sbjct: 142 SGP--SGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLRDPSNTDERFTRA 199 Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+RR + ++ L + + ++ + ++ + Sbjct: 200 RLRRLLPLLAEEGLNAARLARLAVRAGRDDAALRQRAEAVLSEITRTDEAALRLDGLRLR 259 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 ++ ++ + P + +ER+ + ++ GR + L Sbjct: 260 REPCAIVLRVVDAALDTVAPAHEAPVPKRLERLEALVLDALLPALAEGRALRRTLRGVL 318 >gi|209518042|ref|ZP_03266873.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. H160] gi|209501546|gb|EEA01571.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. H160] Length = 475 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 40/413 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE++ + +L I +A SGG DS LL A V G + A+ V H L Sbjct: 2 IEALGAALSALDPNDRIAIAFSGGVDSSVLLDAAVRVA-----GASRCIALHVHHGLSPN 56 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + S+ P + AAAR+ARY + + + Sbjct: 57 ADAWLAHCEAFARERGVEFDARRVDVSRAPGVSIEAAARDARYRALDAMCAMHDVRTLWL 116 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ + RP L R + + R Sbjct: 117 AQHADDQAETVLLQLLRGAGLAGLAAMA-PGSLPAGASTTRVRPLLHLLRAQLEHYASVR 175 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SN D R+ R +R V + AL + F+D + A T+ Sbjct: 176 KLRWIDDESNADTRYARNALRHQV----MPALAVHFPGFRDALARTAAHAAAAQRLLDTL 231 Query: 245 HMRSIIAISQD-------------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + S+D + LL Y +R + + R + Sbjct: 232 ARADMEGASRDEGRALAHDALLALDDDRALNLLRYWMRTLGFVAASSARVADALRQLREV 291 Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT-----------LILYPEETT---- 336 + G R + + ++ + P +++ + Sbjct: 292 GVGQDGHRLRIDHAGHALRSYRGLVYWEAGESSEPADETALVERELSELVWQGQEVWHLP 351 Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 W G + F + D+ + + + IP + QRA S+ ++ GG+ + Sbjct: 352 QWRGTFVFAVV-DATTALDVAETSREEAFETIPVSVLQRASLSVRARRGGERM 403 >gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404] gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404] Length = 503 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 105/281 (37%), Gaps = 26/281 (9%) Query: 11 FFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 F +SL P+ + VA+SGG DSM L L + R + AI++DH R Sbjct: 7 LFKKSLSKLFRAGMPSKVAVALSGGPDSMLLTWLLQN--QKRQMKNLDIYAITIDHKYRS 64 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINA 119 + +E + V + H + S + + K T ARE RY ++S+ + Sbjct: 65 GSHEEAKKVHQWIKDWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESI 124 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----------YDLNLWISRP 168 ++ H DDQLET R Q + + G+ + + L + I+RP Sbjct: 125 PVLFMGHHRDDQLETFIQRLQGNSSIFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARP 184 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKF-QDL 226 FL ++DI I + D +N D R +R + ++ H Sbjct: 185 FLEFDKKDILETCNANGIHYVTDLTNGDVGLTRRNYLRYLIGEVIPHKSGNHQGDISASE 244 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 N+ +++ L S + N L YL Sbjct: 245 TTARNDPYSLIQKTELIKSHASCHDFASLFENKAQKLSAYL 285 >gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 347 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + ++V SGG DSM LL AL ++ + F A+ VDH LR E +++E + Sbjct: 16 RLIAAGELVVVGTSGGPDSMALLYALKTLSAAMHF---NLLAVYVDHGLRPEESREEEQL 72 Query: 73 VSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ V + L I V + L AARE RY ++ A A I AHT Sbjct: 73 MAAVAAALEIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVAHTA 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ +G G+ I RP L + ++ ++L QRNI++ Sbjct: 133 DDQA-----EELLLRLLRGTARGGLSGMAPLARG-RIIRPLLAVSKAEVLAYLAQRNIAF 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-----FQDLRVKVNNAVAMLIPKYLT 243 D SN D RF R RVR + ++++ L+ + AM Y Sbjct: 187 ARDSSNQDLRFVRNRVRLELVPWLKQRFNPRLRETLCHTATVLQDEEELLAAMADEAYRQ 246 Query: 244 VHMRSIIAISQDILNID--STLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300 + A + L++ + L R + ++ L P R +E+++ G +G Sbjct: 247 ARVAGEPAKAALTLSLPFFAAQPRALQRRLLEMALLELQLKPAGRQIEQLLHGADRGGKG 306 Query: 301 CV--SIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 + G V + + A L R ++T Sbjct: 307 VIGHLAGGVTVYKDAKSLRFHREAPGPRRRPPASGKST 344 >gi|307128621|ref|YP_003880651.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri CARI] gi|306483083|gb|ADM89953.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri CARI] Length = 432 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 16/204 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80 I V+VS G DSM LL L + I I + LR ++ + ++ + C + Sbjct: 22 IYVSVSSGLDSMVLLDVLMKIC------NIPICVIHCNFNLRGNDSEKDELFIQEFCLKN 75 Query: 81 RIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +I + NS + AR+ RY I H DD +ET ++ Sbjct: 76 KIFFKSKKFNTINSNSNFSIQMMARKFRYDWFKYLLNNSYCDYIALGHNLDDSIETFFIN 135 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G G+ G+ + I RP +++I S+ + I W ED SN D + Sbjct: 136 LIR-----GTGIKGLIGINNFKNQ--IIRPLSFFLKKEIISYANENKIKWREDISNYDHK 188 Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222 + R R+R F++ I + Y KK Sbjct: 189 YLRNRIRFFLKPILDYKFYNGFKK 212 >gi|218885398|ref|YP_002434719.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756352|gb|ACL07251.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 433 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 92/235 (39%), Gaps = 15/235 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++ VSGG+DS L L + ++ A +DH LR + DE R V+ +C RL Sbjct: 80 RLVIGVSGGADS---LCLLLVLRWLAPRLGLRLHAAVLDHGLRPESADEARAVAALCRRL 136 Query: 81 RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V ++ GL A R ARYA + A TAH DD E V Sbjct: 137 GVPCRVQRADVSDLAARECCGLEDAGRRARYAFFEAERQRTGADWTCTAHQADDLCEDVL 196 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 +R R G+G D I RP L R DI +FL + DPSN D Sbjct: 197 LRLVRGTGWPGLGGMAAMDPARR-----ILRPLLTTERRDIDAFLADLGVQPVRDPSNAD 251 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R R+R V + + AL + +L + + + H Sbjct: 252 PAYRRNRLRHQVLPLLRAENPALGEAVCSLWELARCDADYWSRHLAHAQAGHADG 306 >gi|110003919|emb|CAK98259.1| hypothetical protein mesj of the pp-loop superfamily [Spiroplasma citri] Length = 434 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 16/253 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ++ VSGG DSM LL ++ + F V++ R+ + + V Sbjct: 4 KLLKQNTKYVIGVSGGPDSMFLLDNIY----NSELDINNFIVCLVNYQKRKDSDYDEEIV 59 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127 + C + I V S + A ARE RY + ++ + ++ AH Sbjct: 60 VEYCQKRNIKICVKKVTASDYEQYQVNSHNFQAVARELRYDFFLQISEKYHCQGVLIAHN 119 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSG--MCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 D +ET ++ QR+ + GL+ + L D L I R L+ RE+I +L + Sbjct: 120 LTDHIETYILQKQRNGIVEYYGLNKTSYYYSQLLDKKLKIFRIMLKISREEIIEYLFHKQ 179 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 I++ D +N + R +R ++ I+L + L++++ R K N + ++ YL + Sbjct: 180 INYAIDSTNILAIYNRNIIRNEIQHINLQDMLLEIEQ----RNKENEQLKLIAKNYLIEN 235 Query: 246 MRSIIAISQDILN 258 I S + LN Sbjct: 236 FGQINVTSFNALN 248 >gi|283852225|ref|ZP_06369498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B] gi|283572451|gb|EFC20438.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B] Length = 606 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 16/227 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + A LVA SGG DS L+ L +L + A +DH LR + E V Sbjct: 52 LRGATWLVACSGGPDS---LVLLQILLLLAPRLGFRLEAAHLDHGLRPGSGAEAARVRAF 108 Query: 77 CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + + GL A R ARY ++ + H +D Sbjct: 109 CRDRDVPCHLRRVDVADVSRTRKLGLEDAGRAARYGFFADLLAERPGAFVALGHQLNDLA 168 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E MR R +G D + RP L R DI +F + DP Sbjct: 169 EDQLMRLTRGTGWPALGGMAAVDPARR-----LVRPLLLTPRRDIEAFAAALGLPVVHDP 223 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +N D F R R+R+ L L + ++ + ++ + Sbjct: 224 TNDDPAFLRNRLRQ----GALPMLCAENARYLEAAARLWRQARLDAD 266 >gi|229495229|ref|ZP_04388964.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406] gi|229317672|gb|EEN83570.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406] Length = 473 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 29/316 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L A +LVA+SGG+DS+ ++L + AI + LR E + + ++ Sbjct: 26 LEPHASVLVALSGGADSV-------ALLLALQLANYRPIAIHCNFHLRGEESLRDEQFCR 78 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 D+ +L I V + + + + AARE RY + + A I AH D Sbjct: 79 DLTDQLGIELEVHHFDTRAYAATHRLSVEMAARELRYQVFEQEASKRGIEAIAVAHHLQD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ R G+ + I RP L ++I FL +C Sbjct: 139 NVETLLGNLSRGTGLTGL-------RGILPKRGSIIRPLLDVHPKEIHDFLHLLGQPFCN 191 Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D +N D +R +R + + +L+ +L + ++ + + L R Sbjct: 192 DSTNQDTTIKRNAIRHSIIPLFQELNPQFLTTSRSTLAHLRDAETIYQKGIEALLTEARV 251 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA------ICGGQISLPGYRSMERVMLFLKSGKRGCV 302 I + + LLR A I G+ ++E+ L S + Sbjct: 252 PQVFPFSYTTILTYKVESLLRSGVAPTLLHYITKGKGF--SADAIEQFAAQLSSPHPVSI 309 Query: 303 SIGRVVIDRRANFLWI 318 + ++ R L + Sbjct: 310 TANSHTLECRQGLLHL 325 >gi|160897951|ref|YP_001563533.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1] gi|160363535|gb|ABX35148.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1] Length = 319 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 117/332 (35%), Gaps = 41/332 (12%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++ F L + VA SGG+DS LL+A + AI V H L+ A Sbjct: 3 AAIHRFAPQLP----LAVAFSGGADSTALLLACAERWPG------QVVAIHVHHGLQSAA 52 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTI-------- 117 V VC++ + + P AAR+ RYA + E A+ Sbjct: 53 DAFVGQCEKVCAQHAVPLKIRRVDARHAPGQSPEDAARQLRYATLIEAAREPWPVQGASG 112 Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + A DDQ+ET+ + R G+ + +L RP L Sbjct: 113 DPLPPVRSMALAQHADDQVETLLLALSRGAGVAGLAAMPAQWS---RADLEWHRPLLDLP 169 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 + +R +L R +W EDP+N D R+ R R+R + A F A Sbjct: 170 GQALRDWLAARGQAWVEDPTNADARYTRNRIRAQLLPALQQAFPQFRATFARSSRHCAEA 229 Query: 234 VAMLIPKYLTVHMR-----SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 +L I A+ + +L + LR AI P ++ Sbjct: 230 AELLQEMAQADLAAIGTPPGITALQALSPARQANVLRHWLRSVHAIT------PSAAQLD 283 Query: 289 RVMLFL----KSGKRGCVSIGRVVIDRRANFL 316 +++ + G R + +GR + R + L Sbjct: 284 QLLAQIGVCRTRGHRIHLKMGRGFVRRLGSVL 315 >gi|301167026|emb|CBW26605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Bacteriovorax marinus SJ] Length = 430 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 116/316 (36%), Gaps = 24/316 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + I VA+SGG DS+ LL L + +++F + SA ++H R E + ++ Sbjct: 29 LEGESICVALSGGVDSVTLLYCLKWI--EQNFNGPRISAHHINHGTRRENIREEDFCREL 86 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C L++ V T ARE RYA + + DD E Sbjct: 87 CRELKVPLKVSKVSLDLLSTNFEMKARELRYAEFKNELAPH--SFMALGQHIDDSYEWSL 144 Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M+S R +G+ N RPF+ ++ I++ + ++W ED SN Sbjct: 145 MQSFRSATPSTSLGIPVC--------NGSFIRPFMCLTKDQIKTLAKKLELTWYEDHSND 196 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---------AMLIPKYLTVHM 246 + RF+R +R+ + +K + + + + + + Sbjct: 197 NVRFDRNYIRKNITTSIADRYPKYLKHYVNRSNSLAKTLGLSVFKPKKSSKKILKKSWKG 256 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 R + I+ D + +L+ ++ + +++ + K+GK G + Sbjct: 257 RGVCFINTDFKSSFEVDRSEILKAIYSLSKNS-RGSLHDQVDKFLALGKNGKSGPLIFSG 315 Query: 307 VVIDRRANF-LWITRA 321 V + L++ Sbjct: 316 GVRGYSSKGCLFLLGE 331 >gi|121998224|ref|YP_001003011.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1] gi|121589629|gb|ABM62209.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1] Length = 440 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 109/301 (36%), Gaps = 14/301 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS LL AL V R +A+ +DH L + VC RL + Sbjct: 23 VAFSGGRDSTALLHALAEV---RDRLPAPLAAVHIDHGLHPESARWAEACESVCERLGVG 79 Query: 84 HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 GL AAAREARY E ++ AH DDQ ET +R+ R Sbjct: 80 LECRRVVVPPSAGQGLEAAAREARYRAFGELLAA--GDCLVLAHHADDQAETFLLRALRG 137 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G L M + RP L R + ++L R++ W EDP+N D +RV Sbjct: 138 GGLHG--LCAMPAWRPLGRG-RLVRPLLEVPRTALTAYLQSRSLDWIEDPANRDPAHDRV 194 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQDILNI 259 +R V + Q + A+L + + L + + L Sbjct: 195 YLRERVLPVLAARWPDATGHLQSAVASLQADQALLGGYLDRDLATARAADGRPAVAELRR 254 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANFLW 317 + +C G PG R V ++SG + + I R L+ Sbjct: 255 LMPYQRQAVVRHWLVCSGYRPPPGRRLAAGVQALIESGPDAQPELRWTDGCIRRYRGRLY 314 Query: 318 I 318 + Sbjct: 315 L 315 >gi|61217183|sp|Q5N517|TILS_SYNP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 325 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 21/295 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +L+AVSGG DS+ L+ L + + DH R + ++ Sbjct: 23 LPTRSRLLLAVSGGQDSLALVQLLRGLQP---HWHWSLAIAHCDHGWRSDSTANAEHLRQ 79 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + ++ AAAR RY ++ A I+A L++T HT D+ ET+ Sbjct: 80 LADQWQLPFYCQRSPEPPRS---EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETL 136 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R +G L+ + L + RPFL R + + Q + ED +N Sbjct: 137 LYNLTRGSHLQG--LASLRWQRSLSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNR 194 Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D RF R R+R R + L + D + + + L+ Sbjct: 195 DRRFARNRLRLEVLPQLRQINPQCDRHLANTAELLADEADWLAELTEQVYQQSLSERGLC 254 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 ++Q + + +L L+ P +E + + + + C S Sbjct: 255 RSQLAQQPIALQRRVLHAFLQDQLQRS------PSTVQVEELRQLITAPQGSCSS 303 >gi|332283467|ref|YP_004415378.1| cell cycle protein MesJ [Pusillimonas sp. T7-7] gi|330427420|gb|AEC18754.1| cell cycle protein MesJ [Pusillimonas sp. T7-7] Length = 342 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 125/331 (37%), Gaps = 26/331 (7%) Query: 6 IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 ++++ V +L + I + +SGG+DS +L ++ R+ ++ V H L+ Sbjct: 16 LKAIAAAVNALPKASRRIGIGLSGGADS-AMLAVHAALYGRRT--GVELHCFHVHHGLQA 72 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123 A +V D+ L+I+ + G+ +AAR+ RY + E A N I+ Sbjct: 73 PADGWQTHVHDLAQMLQISCHTRFVQVDVSGGDGMESAARDMRYDALQELAVQANLHHIL 132 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS---- 179 AH +DQ ETV +R R G+ ++ L RP+L R I Sbjct: 133 LAHHQNDQAETVLLRLLRGAGPIGLAAM---APVMQRQGLSYVRPWLEVDRALILQQAEL 189 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 F DPSN DD++ R +R + +L+ + + + + A + Sbjct: 190 FASLTGWVPVSDPSNADDQYTRAALRERLAP-ELNERWPGWQGILARHARQSAEAAEALH 248 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL------LRVSAAICGGQISLPGYRSMERVMLF 293 + + S D + L L + + + +P ++ +M Sbjct: 249 ELAEQDFAGL-EPSADTCSFSLAAWRELSPSRQALVLRYWLAQQGLRMPTDARLQDLMRQ 307 Query: 294 LK------SGKRGCVSIGRVVIDRRANFLWI 318 L+ + + G+V I ++I Sbjct: 308 LRGLHALGHDRHMQLKHGQVWIRCAKGRVFI 338 >gi|229816588|ref|ZP_04446887.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM 13280] gi|229807923|gb|EEP43726.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM 13280] Length = 535 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 137/396 (34%), Gaps = 39/396 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETA 66 R A +++ VSGG+DS L + + R +I + + V+H LR A Sbjct: 36 RGQALAAPVVLMVSGGADSTALALMACTGELDIDDGRGCARIARERLHVLHVNHHLRGEA 95 Query: 67 KD-EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN------ 118 D + +V D+C L + V L AAAR+ RYA + + ++ Sbjct: 96 SDGDEAFVRDLCECLGLPLCVEHAHFADLDGRNLEAAARDVRYAAARRYVRELSRQSGTP 155 Query: 119 --ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 A I+TAHT D+ ET +M + + G+ + + I RP + + Sbjct: 156 RTAARILTAHTASDRAETFFMNAIKGSGAAGL-------SSIPRRRNIIVRPLMDRTHGE 208 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVK 229 + +L W ED SN D + R VR + + ++ D Sbjct: 209 LVRYLQVAGQPWREDESNRDTSYLRNFVRHRLMPLAAERNPGVARSVGAACDILGDEDAF 268 Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 ++ A + ++ + + + + ++R++ + L R +E Sbjct: 269 MSQLAATALRSCTRREGAGLVVLDAARLAAAEVAIARRMVRLAVKRVAPEARL-EMRHVE 327 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQ-- 343 V+ + +G+ V L T R + P V GR Sbjct: 328 AVLACVAAGEGSVALPEGVDARIEFGTLSFRTPTERERAATGWLPVPGSMVVAGGRVLES 387 Query: 344 -FQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALS 378 F + + + A+ G +I AL Sbjct: 388 AFVRVPEGHDAVSLARGLSAEAGGGTVAVIDAAALG 423 >gi|257438697|ref|ZP_05614452.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165] gi|257198832|gb|EEU97116.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165] Length = 300 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 103/309 (33%), Gaps = 27/309 (8%) Query: 4 SPIESVRFFVRS--LVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 I V F R L PA H+ AVSGG+DSM L +L R +A Sbjct: 7 KLIAKVERFARQEQLFAPAEPGRALHLCAAVSGGADSMA---LLRVLLELREAFGYPLTA 63 Query: 56 ISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALIS 111 V+H LR A D + +V C+RL + +V + P AR RYA + Sbjct: 64 CHVNHGLRGEAADRDEAFVRAECARLGVPLTVFRPADVGMTVPPHAGEDWARRLRYACFA 123 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + I TAHT DQ ET+ R R G G + RP L Sbjct: 124 QLLA-GGIDCIATAHTATDQAETLLFRLARGTGLHGAG-------GIRPRRPGYCRPLLG 175 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 R + + W D +N D + R R+R + K Sbjct: 176 LTRAETEALCAAFGQGWVTDETNESDAYARNRLRHGAVPALRSVNDAAEENLARFCEKAA 235 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 A A + + + + +Q + L+ G L ++ ++ Sbjct: 236 RADAYFSRRAEQLLSIARLDAAQTACKAPKAREAWRLKPL----QGADPLILEAALHSLV 291 Query: 292 LFLKSGKRG 300 ++ + Sbjct: 292 APVRDAEEK 300 >gi|304321216|ref|YP_003854859.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis HTCC2503] gi|303300118|gb|ADM09717.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis HTCC2503] Length = 393 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 81/353 (22%), Positives = 139/353 (39%), Gaps = 35/353 (9%) Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118 R ++++E V+ C + H+ ++W S P L AAAR+ARY L+ + + Sbjct: 2 RPSSREEADLVAAWCRARGLRHTTLTWARSDPARKGGGTLTAAARQARYKLLCQACEQHG 61 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRR 174 + TAHT DDQ ETV+MR +R G G++GM L + + RP L RR Sbjct: 62 LDRVATAHTADDQAETVFMRLRRGG---GQGMAGMPRERLIAAGPGPAIRLLRPLLGVRR 118 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY--------LKMKKFQDL 226 +R++ ++ + +DPSN D R+ERVRVR + ++ L + D Sbjct: 119 ARLRAYAKTHDLPFVDDPSNADPRYERVRVRALLGALEEQGLLTVAALCEVAEATALADR 178 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 R + V + +H + + + + L L A G P + Sbjct: 179 RGDGRDLVQAYL-TAEGLHSDGSVYLPLHLPADGTALGVAPLARVIAALGSA--PPRWAD 235 Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA----------VRNLPTLILYPEETT 336 + + +S ++ D LW+ R R L L + Sbjct: 236 VPPPASIV---APLTLSGVQIEPDPNGKGLWVFREPAALLGRRDGSRPLVPQPLKAGQHV 292 Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 ++D R+ D+ + PS A+R L+++P G+ + Sbjct: 293 LFDRRFIVTAPPDTPPGASLCPLGQLVPPSIALSTSARRRLATLPVICVGERV 345 >gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum CM4] gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum CM4] Length = 347 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 20/319 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F+ PA L+AVSGG DS L+ A D +VDH LR + Sbjct: 15 ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDL------LHVATVDHALRPGSA 66 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 DE V + + L + H++++W + + + A+AR ARY L+++HA I A LI+TAHT Sbjct: 67 DEALGVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAARIGAGLILTAHT 126 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV MR GL+GM D + + RPFL + D+ ++ + Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM---------KKFQDLRVKVNNAVAMLI 238 + DPSNTD+RF R R+RR + + L + LR + +A + Sbjct: 185 FLRDPSNTDERFTRARLRRLLPLLAEEGLNAARLTRLAVRAGRDDAALRQRAEAVLAEIT 244 Query: 239 PKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + + + L + ++ ++ + P + +ER+ + Sbjct: 245 RTDEASTDAARLRLDGQRLRREPCAIVLRVVDAALDRVAPPHEAPVPKRLERLEALVLDA 304 Query: 298 KRGCVSIGRVVIDRRANFL 316 + GR + L Sbjct: 305 LLPALGEGRALRRTLRGVL 323 >gi|81299947|ref|YP_400155.1| hypothetical protein Synpcc7942_1138 [Synechococcus elongatus PCC 7942] gi|81168828|gb|ABB57168.1| conserved hypothetical protein YCF62 [Synechococcus elongatus PCC 7942] Length = 336 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 21/295 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +L+AVSGG DS+ L+ L + + DH R + ++ Sbjct: 34 LPTRSRLLLAVSGGQDSLALVQLLRGLQP---HWHWSLAIAHCDHGWRSDSTANAEHLRQ 90 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + ++ AAAR RY ++ A I+A L++T HT D+ ET+ Sbjct: 91 LADQWQLPFYCQRSPEPPRS---EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETL 147 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R +G L+ + L + RPFL R + + Q + ED +N Sbjct: 148 LYNLTRGSHLQG--LASLRWQRSLSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNR 205 Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 D RF R R+R R + L + D + + + L+ Sbjct: 206 DRRFARNRLRLEVLPQLRQINPQCDRHLANTAELLADEADWLAELTEQVYQQSLSEKGLC 265 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 ++Q + + +L L+ P +E + + + + C S Sbjct: 266 RSQLAQQPIALQRRVLHAFLQDQLQRS------PSTVQVEELRQLITAPQGSCSS 314 >gi|213965144|ref|ZP_03393342.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46] gi|213952258|gb|EEB63642.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46] Length = 334 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 132/329 (40%), Gaps = 30/329 (9%) Query: 22 ILVAVSGGSDSMGLLIALHS--VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG+DS+ L + + + K A+ VDH L++ + + + + Sbjct: 12 VVIGLSGGADSLALTAGACAEALGPKGALAGRKVHAVVVDHQLQQGSAEVAERAAHMARE 71 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V++ N+ G AR AR+ ++ E A++ A +M AHT DDQ ETV +R Sbjct: 72 MGATAEVIAVDINNNSDRGPEYEARLARHTVLREVAQSRGA-ALMLAHTLDDQAETVVLR 130 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + LS + D + + I RP L RR D + + + DP N DD Sbjct: 131 LARGGGPQ--ALSAIRDNLTWSDGTRILRPLLGVRRTDTQLCCEELGLKVWHDPHNHDDH 188 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS----- 253 + RVRVR+ + + L + + + + + + +++ Sbjct: 189 YARVRVRKTILPLLEKELGPGVAENLAKTAAIAAVDNDFLDAHADSALHALLGEEVTSAS 248 Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-----------SG 297 + + +D + +L G + P + ++ VM + G Sbjct: 249 GSLSVRGVAELDDAIAVRVLARWLRQAGAE---PSSKQIDMVMALVHRYHGQGEVPVTRG 305 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLP 326 + G R+V++R+ L + +P Sbjct: 306 RDGADRNARLVVERKDGTLQLVMNRPAVP 334 >gi|189425578|ref|YP_001952755.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ] gi|189421837|gb|ACD96235.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ] Length = 476 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 28/311 (9%) Query: 4 SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++++R F +L P ++V VSGG+DS+ LL L ++ + ++HCL Sbjct: 15 KLLDAIRRF--NLCRPGDCLIVGVSGGADSVALLDLLATL----PGFPLTLVVAHLNHCL 68 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R + + ++V + R ++ +S + + L A R ARYA E Sbjct: 69 RGAESDGDQQFVQQLADRYQLPCELRCADISQLARQQRLSLEEAGRTARYAFFDELRTRH 128 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A I AH DDQ ET +G G +G+ + + I RP L R+++ Sbjct: 129 HAAAIAVAHHSDDQAET-----LLLRLLRGAGTTGLSAMAPLNRDG-IIRPLLGISRQEL 182 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R +L R + + ED SNTD + R RVR + + ++ + +L Sbjct: 183 REYLTARGLVFREDSSNTDQAYLRNRVRHELLPLLQEYNPAIAERLSATASLLGEDETLL 242 Query: 238 IPKYLTVHMR------SIIAIS-QDILNIDSTLLFYLLRVSAAICGG---QISLPGYRSM 287 + T + A++ + L L R++ A G + L Y+ + Sbjct: 243 LHCTETAFRQLACSGTGWNALALAGLRQQPHALRLRLYRMAIASLRGHQQRFELRHYQLL 302 Query: 288 ERVMLFLKSGK 298 +R++L +G Sbjct: 303 DRLLLEGSTGA 313 >gi|89898057|ref|YP_515167.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56] gi|123483693|sp|Q255L6|TILS_CHLFF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|89331429|dbj|BAE81022.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56] Length = 317 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 23/312 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + F SL L+A+SGGSDS+ LL L S + F A+ VD+ RE++ Sbjct: 10 KRLEVFFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFIAVHVDYGWRESS 62 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 E + C + V + AAR RYAL + + N + I A Sbjct: 63 YREAEELELRCQAEGVPIIVDHVPPEYRTSRDQENAARRYRYALFHKVCQKKNLSGIFLA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +DQ ETV R L GM + Y+ + I RP L + + L N Sbjct: 123 HHANDQAETVLKRVLEGAHL--SNLKGMRGEVYYE-GIPILRPLLHIPKIVLSRTLDAAN 179 Query: 186 ISWCEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 I + D +NTD+R+ R R+R + +I + + +++ + + Sbjct: 180 IHYVHDITNTDERYLRARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPF 239 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVMLFLKSG 297 L + +S L I TL+ + ++ +C + ++ V L G Sbjct: 240 LEKIRKENTTLS---LEIPKTLIEQVF-LTKWVCKEFFYSAGIVASRHFLQTVYDHLNRG 295 Query: 298 KRGCVSIGRVVI 309 + + + Sbjct: 296 LPAQMRLRNKRV 307 >gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032] gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032] Length = 329 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 14/317 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L A V ++VDH L+ + Sbjct: 14 AVRRVLAELPADGPVLVACSGGADSLALAAAAAFVAPRSGRVA---GLVTVDHGLQTGSA 70 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + V+ + + VV + + G AAAREARY + E A A ++T H Sbjct: 71 ERAEAVARWAEQAGLSPVEVVRVEVAGRPGGPEAAAREARYQALVEAAGRHRAAALLTGH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R +G+ + + + + RP L RE R+ + Sbjct: 131 TRDDQAETVLLALARGAGPRGLAGMPVRRDL---GGVPLVRPLLEISREQTRAACAALRL 187 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAMLIPKYL 242 + +DP N D + R RVR + + L + + L N + L L Sbjct: 188 TPWQDPHNLDPAYARSRVRAQLVPALVETLGPGVVDNLARTARLVAADNAVLDELAGGAL 247 Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299 ++ L ++ + +LR A G + +R + + + + G+ Sbjct: 248 LAARHPDGGLATKTLADLAGAVRGRVLRAWAHELGSPPAALSHRHIAALDALVTAWRGQG 307 Query: 300 GCVSIGRVVIDRRANFL 316 G + + R+A+ L Sbjct: 308 AAYLPGGLRVVRQADRL 324 >gi|121611837|ref|YP_999644.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2] gi|121556477|gb|ABM60626.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2] Length = 308 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 118/315 (37%), Gaps = 23/315 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +++ + V +SGG+DS LL+A + A+ V H L+ A ++ Sbjct: 1 MQAFAPALPLAVGLSGGADSSALLLACARRWPG------QVQALHVHHGLQAAADGFEQH 54 Query: 73 VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN----ATLIMTAHT 127 + +C RL++ V + S P AAR+ARY ++ A+ I+ Sbjct: 55 CAALCQRLQVPLMVQHLRASPAPGQSPEDAARQARYQALAALAQANQTHDAIKSIVIGQH 114 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R G+ + L RP L+ D+R +L + + Sbjct: 115 ADDQAETVLLALLRGAGVAGLAAMPARWEMA---GLTWHRPLLQVTAADVRQWLRAQGQT 171 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 W EDPSN D R R R+R + L A + + A L+ Sbjct: 172 WVEDPSNADQRLTRNRIRAQLMP-ALDAAFPTFRDTFARSAANAAQAAQLLETLAQQDQA 230 Query: 248 SIIAISQ--DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGC 301 + Q + + +LR + + P + ++ +++ G R Sbjct: 231 QVGRPPQIGPLQGLSRARQANVLRHW--LRNAHHTTPAAAQLHELLDQIEACTTRGHRIH 288 Query: 302 VSIGRVVIDRRANFL 316 + +GR + R L Sbjct: 289 IKVGRGFVVRCGPQL 303 >gi|172037514|ref|YP_001804015.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece sp. ATCC 51142] gi|171698968|gb|ACB51949.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece sp. ATCC 51142] Length = 323 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 134/328 (40%), Gaps = 24/328 (7%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M+ S V ++ L ++L+AVSGG DS+ LL + + + + Sbjct: 1 MWTSLHARVHQTLKDSLILPRKNNLLIAVSGGQDSLCLLKLMIDLQKKWGW---NLAIGH 57 Query: 58 VDHCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 DH + +V ++ + +I K ++ AAARE RY + E AK Sbjct: 58 CDHGW--ASDLGIADHVRELANDWQIPFY---LKVAEAMEETEAAAREWRYHSLIEIAKE 112 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 T ++T HT D+ ET+ R G+G + + + RP L+ R + Sbjct: 113 HQFTEVLTGHTLSDRAETLLYNLIRGAGSNGLG--ALTWKRPLTNKINLVRPLLKVSRSE 170 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNN 232 F Q ++ ED N + + R R+R+ +++ + + + + ++ +N Sbjct: 171 TLEFCKQFSLPIWEDAVNANLDYARNRIRQQLLPYLKENFNPNVEITLSQTSEVLKAESN 230 Query: 233 AVAMLIPKYL-TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + K L + ++++IL ++ L ++R A ++ P + +E Sbjct: 231 YLEAEANKILQEAFNHNNYTLNREILKDLPLALQRRVVRQFLAEIM--VTRPNFEQIEET 288 Query: 291 MLFLKSGKRGCVSI--GRVVIDRRANFL 316 + + + +R S G ++++ N + Sbjct: 289 VKLIDAPRRSRTSSFPGNLILEVEENCI 316 >gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354] Length = 288 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 21/268 (7%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + A +VDH LR + DE +V+ VC L I H+ + S L A AR RY + Sbjct: 10 RVRAATVDHGLRPESADEAAFVARVCEGLGIPHATLRVDVSP--GNLQANARAVRYEALG 67 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-----S 166 H + + A++ TAH DDQ ET+ MR R GL+G+ ++ I Sbjct: 68 CHFEQVGASVFATAHHADDQAETLLMRLNRGSGL--AGLAGVRPWSVFFPEGIIEEMVMV 125 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKF 223 RP L RR ++ + + I +DPSN+DD F+R R+R+ + D +D A+ + Sbjct: 126 RPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAEWLDPLAMARSARHL 185 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 + + + V+ + + + + L + + ++ + GG++ Sbjct: 186 AEAEEAIGDYVSSVANQLIWRDGACYFCMGYPRL----VEIGVVEKILDRLGGGEV---R 238 Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + R++ L++ + S+G V+ R Sbjct: 239 RSEVARMVDRLRARENA--SLGGVLAKR 264 >gi|332530123|ref|ZP_08406072.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624] gi|332040393|gb|EGI76770.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624] Length = 313 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 117/317 (36%), Gaps = 31/317 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A SGG+DS LL+A + A+ V H L+ A V C L I Sbjct: 2 ACSGGADSTALLLACAERWPG------QVQALHVHHGLQAAADGFEAQVRATCEPLNIPL 55 Query: 85 SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 P AAR ARYA ++E A + A DDQ+ET+ + R Sbjct: 56 HTWRVDARHAPGQSPEDAARGARYAALTEAALMAGVRDVALAQHADDQVETLLLALSRGA 115 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS----WCEDPSNTDDRF 199 G+ L RP L ++R +L R + W +DPSN D+R+ Sbjct: 116 GLPGLASMPQA---WERGGLRWHRPLLDVPGAELRVWLEARGLRAGAGWVDDPSNADERY 172 Query: 200 ERVRVRRFVRDI------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----HMRS 248 R R+R + + A + + ++ N +A+ V H Sbjct: 173 TRNRIRARLLPVLDVVFPQFRATFARSAAHAAQAQRLLNELAVQDAAATGVGIDPGHGPR 232 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKS----GKRGCV 302 I + + + LL + LR + A+ G + +E ++ + + G R + Sbjct: 233 IAELRALSRDRQANLLRHWLRQAHAMADPHGGSANASSAQLEELLDQVAACATRGHRIEL 292 Query: 303 SIGRVVIDRRANFLWIT 319 +G ++RR + L Sbjct: 293 KVGAGRVERRGDILAWY 309 >gi|89068037|ref|ZP_01155454.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516] gi|89046276|gb|EAR52333.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516] Length = 377 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 22/365 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M +L + I+ + ++VDH LR A DE V+ L + H V+ W + Sbjct: 1 MAMLHLAAAWA---RVFGIRLAVVTVDHGLRPEAADEAALVAAEAELLGLPHDVLRW-HW 56 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 Q L AAR AR LI + I + AHT DDQ ET+ +R +R +G LSG Sbjct: 57 DGQGNLQDAARRARARLIGDWRGEI--AHVAFAHTRDDQAETLLLRLRRGSGVEG--LSG 112 Query: 153 MCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 M + D+ W I RP L R+++R + I + +DPSN D ++RVR+RR + D+ Sbjct: 113 MAER--RDMGGWQIVRPLLDAGRDELRHYCRVLRIPYADDPSNADPTYDRVRIRRLLSDL 170 Query: 212 DLHALYLKMKKFQDLRVKVNNAVA-----MLIPKYLTVHMRSIIAISQDILNIDSTLLFY 266 + L R++ + + + ++ I++ Sbjct: 171 EAEGLGAGTLAATAARLRRARTALARRAYDVAERVASTEAGDVLFERDGFAGIETDTQLR 230 Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326 LL + P ++E ++ +G G + RV++ R TR R Sbjct: 231 LLAAALQYVASAEYRPRAAALEALLERALAGGGGTLHGCRVLVGRTH-----TRIAREYE 285 Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386 + +E VWD R++ + + +P + AL + P+ G Sbjct: 286 AVRALRDEAGVWDRRWRVVYEPREGLAVRALGEVGLAQAPELPDA-PRVALHAAPALFDG 344 Query: 387 KPLLA 391 L+A Sbjct: 345 DRLVA 349 >gi|254525679|ref|ZP_05137731.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202] gi|221537103|gb|EEE39556.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202] Length = 338 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 18/253 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++IL++VSGG DSM LL ++ + + S DH E + + Sbjct: 29 IPKGSNILISVSGGQDSMALLNLINDL---KKLHNWTISVWHGDHQWHEKSSLYALELKS 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128 C I+ S + +K ARE RY + E AK + ++T HT Sbjct: 86 YCEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTVLNKNQQKHNIYLLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLLENQIFLIRPILIFSREDTKKFCNHMKIPV 201 Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N+D + +R VR+ + ++ ++ F K NN L + ++ Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSKYNNERNDL-SELAYLY 260 Query: 246 MRSIIAISQDILN 258 + I I++++LN Sbjct: 261 CKDIKGINRNLLN 273 >gi|87301619|ref|ZP_01084459.1| possible MesJ-like protein [Synechococcus sp. WH 5701] gi|87283836|gb|EAQ75790.1| possible MesJ-like protein [Synechococcus sp. WH 5701] Length = 365 Score = 173 bits (440), Expect = 4e-41, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 126/352 (35%), Gaps = 28/352 (7%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DSM L L + R + +H R+ A D+ ++ L + Sbjct: 34 AISGGQDSMALTALLLEL---RRLHGWELHLWHGNHGWRKEAADQAGELAAWAGGLGLPI 90 Query: 85 SVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + + + G A R RY +++ A ++ T ++T HT D+ ET+ R Sbjct: 91 RVENAPAAPASSASGREEAGRRWRYERLNQQALSLGCTRVVTGHTGSDRAETLLFNLARG 150 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G LS + + + RP L R + SF Q+ + DP NTD RF R Sbjct: 151 CGLRG--LSSLRARRPLSGRIELVRPLLGFSRAETASFCKQQQLPLWLDPGNTDPRFSRN 208 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDILN 258 R+R+ V + ++ L ++ + L M ++ Sbjct: 209 RLRQEVLPVLEELHPGAWRRLGALAERLEGTQNLTQELALLALMALETPPAAPLAAGRPE 268 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 L L A S + ++L L + V +G ++ L + Sbjct: 269 QGPELQRQPLSELTA------------SSQELLLDLWLERSAGVRLGARSLEALRRRLPL 316 Query: 319 TRAVRNLPTLILYPEETTVWDGR--YQFQNLSDSLIQIGPQSYRKADVPSGI 368 + + +L L + WD + + SD GP A PS Sbjct: 317 S---QGPGSLALPGGRSLHWDRQSLWLQPEPSDHAGPSGPPEPGAASAPSNR 365 >gi|296126844|ref|YP_003634096.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563] gi|296018660|gb|ADG71897.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563] Length = 450 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 15/258 (5%) Query: 7 ESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63 E+ +F + ++ + + VA SGG DS +L + + D SF I V++ LR Sbjct: 4 ETSQFLLSNIDDIKNKTLAVAYSGGIDSQVMLNIAYRLKDDLSF---NLIIIHVNYNLRG 60 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E + ++ + ++ + I V +NS + AR RYA E + Sbjct: 61 EDSTNDELFAREMAKKYNIDIYVKEIPQNSYIGKNIQLEARNDRYAFFEELYNKKIYDYL 120 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + AH DD ET+ R + L +I RP L R+DI + Sbjct: 121 LIAHNKDDLAETIIYRMIKGAGTN-------VYKSLRGKKGYILRPILNFYRKDIEIYAQ 173 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 +++ ED SN + + R ++R + + L + K K + ++ K + Sbjct: 174 VNSLTHREDYSNKKNYYARNKIRNLIIPM-LEEINTNAKTNIIRFAKRSYEETYILRKKI 232 Query: 243 TVHMRSIIAISQDILNID 260 + I+ LNI+ Sbjct: 233 NKLYKKNISEKNKKLNIE 250 >gi|325109969|ref|YP_004271037.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305] gi|324970237|gb|ADY61015.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305] Length = 332 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 112/309 (36%), Gaps = 14/309 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78 ++VAVSGG+DS+ LL + + ++ +H R + ++ ++ +C+ Sbjct: 22 RQLMVAVSGGADSIALLRGCVFLAEECE---LRLVVAHFNHRTRPGENERDLEWLQALCT 78 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +L + + + R+AR + A++ + AH DDQ ETV R Sbjct: 79 QLAVPFVAGERDSQASTSSSENELRQARRRFFIDTARSREIGTVCFAHHADDQAETVLHR 138 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G++GM + + RP L + +R FL + + ED SN + Sbjct: 139 LCRGTGL--AGMTGMQEVSSLAEGIVAFRPLLGLPGQALRDFLSEIDQPHREDASNASSQ 196 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPKYLTVHMRSIIA 251 + R R+R+ + + ++ ++ + L+ L + Sbjct: 197 YTRNRIRQQLTPLLEQIHPGAAANIARSAEQLRESLELQQRLASALLNLVLIDAGPQYVR 256 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIGRVVID 310 + + L L+ V +R++ + C GR+ + Sbjct: 257 LRRQPLACAEPLIARDALVQLWTEQNWPRQAMTRAHWQRLLAAAQPAGAACELPGRIRAE 316 Query: 311 RRANFLWIT 319 RR L + Sbjct: 317 RRGEMLVLE 325 >gi|310821984|ref|YP_003954342.1| tRNA(ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1] gi|309395056|gb|ADO72515.1| tRNA(Ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1] Length = 452 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%) Query: 4 SPIESVRFFVRSL--------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 P + R R+L + +L+AVSGG DS LL+ V R I Sbjct: 3 RPRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALLLGTALV---RERLGILVEV 59 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 ++DH LR A +EVR V + +R ++ V S K GL AREARYA +S+ Sbjct: 60 ATLDHGLRPEAMEEVRAVERLAARQKMICHVRSLHV-KEGPGLEVRAREARYAALSQLCS 118 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I TAHT DQ ET+ MR R + +G T + + RP L RE Sbjct: 119 ERKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTRE 171 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRV 228 + +FL ++ + DP N D RF R R+R V A+ + Sbjct: 172 QVEAFLGEQEEGFAVDPMNADPRFLRARIRHHVLPALTQAVGYPVTERLASFARLAAEDE 231 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + ++A L + A+ L + ++ A + ++E Sbjct: 232 ALLQSLAGAAWDRLRGSGEGLDAVGVRALELPLRRRVLARLLAEARA-----VVDAATLE 286 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 RV+ ++ G+ +S + + + R Sbjct: 287 RVLAAVEGGRSATLS-HGLQLRASGGLVRCVR 317 >gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris HaA2] gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris HaA2] Length = 346 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 87/286 (30%), Positives = 122/286 (42%), Gaps = 12/286 (4%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S E+ F PA I++AVSGG DS+ L+ R G +++DH L Sbjct: 9 ISAREASSLFADWKAVPA-IVLAVSGGPDSLALMWLAARWRKARKRGP-ALFVVTIDHGL 66 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R A E R V L + H + W KP TGL AAAR ARY L+++ AK + A I Sbjct: 67 RPEAAREARSVKQFARTLGLPHRTLRWTGDKPATGLPAAARAARYRLLAKAAKAVGAAHI 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 MTAHT DDQ ETV MR R GL+ M D + RP L ++ + + L Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMPRETARD-GAVLVRPLLDVSKQRLVATLD 183 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----I 238 + I + DPSN D RF R R+R + + + R A L Sbjct: 184 RAKIGFAVDPSNADPRFTRPRLRELMPLLAAEGCDSRNLARLAARAARAEAALELLVDGA 243 Query: 239 PKYLTVHMRSIIAISQD---ILNIDSTLLFYLLRVSAAICGGQISL 281 ++L V S D +++ + LL + G + Sbjct: 244 ERFLAVRSAGHPPQSFDASVFYALNAEIRIRLLLRAIGRVGREGRP 289 >gi|332298400|ref|YP_004440322.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168] gi|332181503|gb|AEE17191.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168] Length = 489 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 126/336 (37%), Gaps = 37/336 (11%) Query: 15 SLVYPAHILV-AVSGGSDSMGLLIALHSVLS----------DRSFGKIKFSAISVDHCLR 63 L P I+ VSGG+DSM LL A + + +F I+VDH +R Sbjct: 30 ELFRPGSIVAFGVSGGADSMALLCASVRIRESLYSASCTPGENDTASARFRVITVDHNIR 89 Query: 64 --ETAKDEVRYVSDVCSRL-----RIAHS---VVSWKNSKPQTGLMAAAREARYALISEH 113 E + + +V + C L R+A V + + GL AAR RY + Sbjct: 90 PPEESGGDAAFVRNFCETLPSTDCRVAVFERGAVERLARERRRGLEEAARSLRYGIFESD 149 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ A +I AH +DQLET+ +R + + + + RP L Sbjct: 150 ARQTGAAVICLAHNRNDQLETLLLRFLQGSS---------AASGIPRCREPFVRPLLDIG 200 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R DI +L + D +N D+R+ R + R + + L++L + Sbjct: 201 RADILRYLEILAVPHRTDATNFDNRYLRNKCRNELVPV-LNSLVPGWDTAVLSGAEKAAE 259 Query: 234 VAMLIPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 A+ I S+ ++ + + L+ + + + +P Y + Sbjct: 260 DAVFIDAAADSCSWRSDGDSLCMDARTFRLQAAAIKRRLIYRAFDVLETETRIP-YAFVR 318 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 R+ R VS G + +D L + + ++ Sbjct: 319 RICRAGGGEHRFSVSAGGITVDSDGVVLCLRKTEKD 354 >gi|303290410|ref|XP_003064492.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454090|gb|EEH51397.1| predicted protein [Micromonas pusilla CCMP1545] Length = 203 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 11/199 (5%) Query: 14 RSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +V ++VA VSGG DS+ LL L + + + + + +H R +++E + Sbjct: 12 HDIVRRGDVVVACVSGGPDSVALLHLLRELSDEWN---LAVHVLHCNHGKRSASEEEETF 68 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V ++C RL + V + + ARE R A+ ++A +I+ AH +DDQ+ Sbjct: 69 VVEMCERLGVDVHVRRPEAPWGSSHFQERAREWRRKEARALARDVDARVILQAHHWDDQV 128 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ ++ R G LS + + +N + RP L CR++++ +L R + D Sbjct: 129 ETILLKILR-----GCHLSNIKGMM--YVNGDVGRPLLDCRKDELVRYLRARGVDSRVDE 181 Query: 193 SNTDDRFERVRVRRFVRDI 211 SN D F R ++R + + Sbjct: 182 SNDDATFSRNKIRHELVPL 200 >gi|119953563|ref|YP_945773.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135] gi|119862334|gb|AAX18102.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135] Length = 439 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 27/223 (12%) Query: 1 MF----LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 MF L+ IES F+ ++ + ++VA SGG+DS LL++L L++ A+ Sbjct: 2 MFWNNILTKIES--FYFKNSLTKEKVIVAFSGGADSTTLLLSLKEYLNN------NIVAL 53 Query: 57 SVDHCLRETAKD--EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYA 108 H +R + E+ ++ C+ I + + K+ + + AR+ RY Sbjct: 54 YFAHYIRSDFEQNLEIEHIKKFCNFYSITFQIKRCSVDIKRKSRQLGMSVEELARKYRYD 113 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + E A+ I AH +DQ ET+ MR + G LSG+ N I RP Sbjct: 114 ALLESFIENGASYIALAHNQNDQFETLVMRFFQGSFLDG--LSGIPVI-----NGNIIRP 166 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + REDI FL NI + D +N +D + R R+R + + Sbjct: 167 LIEVSREDIEKFLSLNNIVYSVDSTNREDLYLRNRIRNNLMPV 209 >gi|296122267|ref|YP_003630045.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776] gi|296014607|gb|ADG67846.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776] Length = 375 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 126/342 (36%), Gaps = 34/342 (9%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLI------ALHSVLSDRSFG-KIKFSAISVDHC 61 V+ V S + +++AVSGG DS+ LL L D F K + +H Sbjct: 28 VKSCVSSKRESSRLVMAVSGGIDSLALLHGFLWVSQLDEWRRDHGFPEKSDWLIAHFNHQ 87 Query: 62 LRE-TAKDEVRYVSDVC--SRLRIAHSVVSWKNSKPQTGL------MAAAREARYALISE 112 +R + ++ +V + +L + + + + A R +RY + Sbjct: 88 VRGKASDEDAEWVKQLAVQEQLHVRIGDRQSEAGQGAGEIDHASISEEALRRSRYDFLRR 147 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A A I+ AH DDQ ETV R + GL+GM + + +L + RP L Sbjct: 148 VAGEHQAKCIVLAHHADDQAETVLHHLLRGSSF--SGLAGMRRSQPFKPSLTLERPLLSL 205 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------------DLHALYLK 219 + +R FL++ W ED +N + + R +R+ V +L Sbjct: 206 NKSTLRQFLVEIGQDWREDGTNNETVWTRNALRQLVLPALDDALIKMGIQRTSAQSLLQL 265 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 K Q++ + N L+ + + ++ ++ + Sbjct: 266 AKHSQEVETLLQNLADELLKESVLEGSLGKFQVAPWGKRQPIIQREAFKQIWIRNQWPRK 325 Query: 280 SLPGYRSMERVMLFLKSGKRGCV--SIGRVVIDRRANFLWIT 319 L +ER+ FL K+ G + + RR ++ +T Sbjct: 326 GLAARH-LERLCEFLGEYKQPLSGDFPGGIRMTRRRDWFSLT 366 >gi|225010841|ref|ZP_03701309.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C] gi|225005049|gb|EEG43003.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C] Length = 442 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 20/236 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCS 78 + L+A SGG DS+ L + F+ + LR A + ++V+++ Sbjct: 19 SPFLLACSGGVDSVVLAHLCSQC-------GLTFALAHCNFNLRGAASTADAQFVANLAL 71 Query: 79 RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + S+ K + + AR RY + KT N ++TAH +D LET Sbjct: 72 ELGVPVFQTSFDTNAYIKKHKVSIQMGARTLRYNWFDKLIKTHNYQYLLTAHQREDALET 131 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R +G L G+ + Y I RP + + + +F + +I W ED SN Sbjct: 132 MIINLSRGTGIEG--LLGIPEKRDY-----IRRPLICFAKAALLAFANENHIQWREDSSN 184 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 + R ++R V + ++ + + + L YL + Sbjct: 185 DSTDYLRNKIRHEVLPLMADLHPTALENMIQTQSHLKER-SQLASLYLEQLKKEFF 239 >gi|152991221|ref|YP_001356943.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2] gi|151423082|dbj|BAF70586.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2] Length = 329 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 61/278 (21%), Positives = 98/278 (35%), Gaps = 21/278 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L+ L+A S G DS L L I F VD+ LR +KDEV Y Sbjct: 7 DLLQGKKNLLAFSAGIDSTALFFLLLE-------RNIDFDIAIVDYGLRSQSKDEVAYAV 59 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ + P + AR RY E + ++TAH +DQLE Sbjct: 60 ELAKKYTKKIYTKQVTIKPP--SVEEKARNVRYQFFDEIIQQEGYHNLLTAHQLNDQLEW 117 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ + L GM D + I RP L ++ +++S+L + I + D SN Sbjct: 118 FLMQLGKGAGL--CELVGM-DIVTNRKGYKIVRPLLFVQKSELKSYLETKKIPYYIDESN 174 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D + R +R D + +KK ++ + I + + Sbjct: 175 LQDSYFRNYIRHNFGDPFMKRFGDGIKKSFHYLLEDKKILEEKIQIHSYKELYFATNTHN 234 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 D +N +L L + L E ++ Sbjct: 235 DYMN--KRILDRLFKKLG-------YLLSSAQKEEILR 263 >gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062] Length = 297 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 9/292 (3%) Query: 36 LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ 95 + L S ++ K+KF VDH LR + E V + ++ I V+ WK KP Sbjct: 1 MAYLAKCYSIKNKIKVKFFL--VDHRLRNESTKEATLVKKILQKIGITCKVLIWKGKKPS 58 Query: 96 TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD 155 + + AREARY+L+S+ K N ++ H +D +E +R R G+ +S Sbjct: 59 RNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGL-VSFNKS 117 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-----RD 210 D +L I RP L + D+ + + +DPSN ++ ++R R+R + Sbjct: 118 VKYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEG 177 Query: 211 IDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 +DL L L + +D + V L + + +S + + ++F L Sbjct: 178 LDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSHEVVFRSLT 237 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 G + +S+ ++ + +++G ++R + I+R Sbjct: 238 FVIQKIGKKYYPVRGKSINELINRIILKTFSKITLGGCFVERVNETILISRE 289 >gi|323165890|gb|EFZ51672.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei 53G] Length = 193 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 7/161 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A VR+ Sbjct: 7 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++C + ++ V + ++ G+ A AR+ARY + + +++TA DDQ E Sbjct: 65 ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 T + +R G+ G + RP L R Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTR 160 >gi|295676870|ref|YP_003605394.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1002] gi|295436713|gb|ADG15883.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1002] Length = 490 Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats. Identities = 78/413 (18%), Positives = 133/413 (32%), Gaps = 36/413 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE++ + L A I +A SGG DS LL V G + A+ V H L Sbjct: 14 IEALGVALSGLDPAARIALAFSGGVDSSVLLDVAVRVA-----GPSRCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + S+ P + AAAR+ARY + + + Sbjct: 69 ADAWLAHCEAFARERGVEFDARRVDVSRSPGVSIEAAARDARYRALDAMCAAHGISTLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ + RP L R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PGSLPTGASTTRMRPLLHLLRAQLEDYASAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SNTD R+ R +R V + L + + + L+ Sbjct: 188 KLRWIDDESNTDTRYARNALRHQVIPV-LAVHFPGFRDALARTAAHAASAQRLLDTLARA 246 Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 M L D LL Y +R + + R + Sbjct: 247 DMEGASRDEGRALAHDVLLALDDDRALNLLRYWMRTLGFVAASSARVADALRQLREVGAG 306 Query: 295 KSGKRGCVSIGRVVIDRRANFLW---------------ITRAVRNLPTLILYPEETTVWD 339 + G R + + ++ + R + L W Sbjct: 307 QDGHRLRIDHAGHALRSYRGLVYWEAGDSSEPADETALVEREISELAWQGQEVWHLPQWR 366 Query: 340 GRYQFQNLSDSLIQIGPQSYRKADVPSGI---PPIIAQRALSSMPSKEGGKPL 389 G F + ++ + A + + P + QRA S+ ++ GG+ + Sbjct: 367 GTLVFAVVDAAVPSDVADAAHDAPLDEALDTVPVSVLQRASLSVRARRGGERM 419 >gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21] gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21] Length = 325 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 16/250 (6%) Query: 1 MFLSPIESVRFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54 M L+P E V F + L + +A SGG DS L +L Sbjct: 1 MALAP-ELVERFRQDLARVWTLDEGEKMGIAFSGGPDS------LALLLLAVEALPGSVE 53 Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 A +VDH LR + +E R + +C L + H +S P + A AR ARY ++E A Sbjct: 54 AATVDHGLRAESAEEARNAARICEALGMPHETLSVTI--PHGNVQAEARHARYEALAEWA 111 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + I TAH DDQ ET MR+ R G+ T L + +L + RP L RR Sbjct: 112 ERRSLDYIATAHHADDQAETFLMRANRSSGLSGLAAV-RAATSLGEGDLIVLRPLLPWRR 170 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + DPSN D+ F+RVR+R+ + ++D + + L ++ Sbjct: 171 SALEDIARDSGFPVAADPSNLDESFDRVRMRKGLAEVDFIDVEGLAGSARYLAEMQDDID 230 Query: 235 AMLIPKYLTV 244 M + +++ Sbjct: 231 GMALEEWVRA 240 >gi|269123409|ref|YP_003305986.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM 12112] gi|268314735|gb|ACZ01109.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM 12112] Length = 397 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 50/309 (16%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MF + IE + ++ IL+A S G DS+ LL +L + ++ V+H Sbjct: 1 MFRNFIERNKLIEKN----DKILIAFSAGPDSVFLLE---KLLEIKDEYNLQLHLGYVNH 53 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R+ ++ V + ++ + +S++ K K ARE RY+ +S+ K I T Sbjct: 54 NFRDDVHKDMELVKKIANKYNLEYSILDIKLEKFT---EEKARELRYSALSDLKKRIKFT 110 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I T H D ET+ R R G GL G+ + + I RP L +++I Sbjct: 111 KIATGHNKTDNAETIIFRIIR-----GTGLDGLEGIRIKRDD--IIRPILYISKDEI--- 160 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 L Q + D +N ++ + R ++R V I +A + K Sbjct: 161 LKQVYNEYVIDKTNLENNYSRNKIRNLVFPI----------------------LAEINSK 198 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 Y+ +I+ I ++I+NI+ Y+L + ISL + +E++ L + Sbjct: 199 YID----NIVKIHKNIININDEKYEYILNK---LNEKNISL-NTKKIEQIYNILDKNESK 250 Query: 301 CVSIGRVVI 309 + +G I Sbjct: 251 IIDLGNEYI 259 >gi|194289326|ref|YP_002005233.1| tRNA(ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424] gi|193223161|emb|CAQ69166.1| tRNA(Ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424] Length = 468 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 15/323 (4%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS+ LL A + ++ G + A+ V H L+ A + R+ + +C++ ++ + Sbjct: 32 LSGGRDSVALLHAARAAVAQAGDGA-RVVALHVHHGLQAEADEWDRFCAALCAQWQVGYF 90 Query: 86 VVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V G+ AAAR ARYA ++ A L++ AH DDQ+ETV +R R Sbjct: 91 VRRVSVRPAAGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFRGAG 150 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 GM + + + RP+L R I + + W +DPSN D R+ R + Sbjct: 151 VAGMAGMPAMRPLDPRSGVMLLRPWLDEPRAGIEDYCAANALRWVDDPSNADGRYARNAL 210 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD--------- 255 R+ + L A + + LI + T + +++ +D Sbjct: 211 RQQLP--ALQAAFPALAANVVQAAAHFAQAGALIDQLATTTLATLVRAGRDPDTLSELDL 268 Query: 256 --ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + +LR+ G + + R L +G ++ +V+ R Sbjct: 269 PGLRALPGAQADAVLRLWLRDLGVRAPSTARLAAMREQLVAHAGGEPAIAHEGLVLRRFR 328 Query: 314 NFLWITRAVRNLPTLILYPEETT 336 + + + + Sbjct: 329 DRVLACVPPPAAAPAAVLLDWRG 351 >gi|313664903|ref|YP_004046774.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50] gi|312949767|gb|ADR24363.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50] Length = 401 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 122/254 (48%), Gaps = 16/254 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 L+A+SGG DS+ LL + ++ V++ R + ++ + V+++C Sbjct: 8 KDKKYLLAISGGPDSVFLLCNIVKIIDS-----TNLIVCHVNYNFRYDSINDQKIVTNLC 62 Query: 78 SRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + +++ + + AR RY ++ AK + ++ AH F+D +ET Sbjct: 63 KKFDLKLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYHIYNLLVAHNFNDLIETY 122 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ QR+ GL T+ + +L + RP L ++ +I +L IS+ D +NT Sbjct: 123 LLQLQRNNLVDYYGL----KTVSHYKDLVVYRPLLDIKKSEILDYLKMNQISYAIDSTNT 178 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIAISQ 254 D +++R ++R + + ++++ +K D+ K + ++ YL ++ + +++ Sbjct: 179 DIKYQRNKIRSILDE----SIFINIKNQIDIDNKKLETIKKIVNNYLEHNLINKELILNK 234 Query: 255 DILNIDSTLLFYLL 268 ++ ++S ++ ++ Sbjct: 235 ELFLLESNIIKRII 248 >gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314] gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314] gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314] gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314] Length = 483 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 85/415 (20%), Positives = 149/415 (35%), Gaps = 77/415 (18%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F ++ R F + P + VA+SGG DSM L L K + AI++DH Sbjct: 7 LFRKSLD--RLF--NGNAPKKVAVALSGGPDSMLLTWFLSQC-------KFEIYAITIDH 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115 R + E V + + H + S + AR RY +++ Sbjct: 56 KYRPESSREALSVYERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCY 115 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------------ 163 + ++ H DDQLET R Q + + G+ + + +L Sbjct: 116 DKDIPVLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQ 175 Query: 164 -WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDL------HA 215 I RPF ++DI NI++ DP+N D R +R + DI H+ Sbjct: 176 VRILRPFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHS 235 Query: 216 LYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHM---------------RSIIAISQDILN 258 YL + K Q D K M + + + + + L+ Sbjct: 236 PYLLIDKSQLIDSHTKCLEFATMFENRAMALSESLQSSGLIKEFPALGSLQVKFPRQCLD 295 Query: 259 IDSTL--LFYLLRVSAAICGGQISLPGYRSMERVML-----FLKSGKRGCVSIG--RVVI 309 + + +L R+ + Y +ER ++ FL+ G+ G + +V Sbjct: 296 QTNGIVTSRFLYRILHPYSTLKHYHWAYAKLERQLIPRITKFLEQGQSGTFKLTMMNLVF 355 Query: 310 DRRAN------FLWITR---AVRNLP----TLILYPEET--TVWDGRYQFQNLSD 349 + N + I R ++ P TL + PE + ++D R+ + S+ Sbjct: 356 EVTNNIQSEYVPIHIYRCPITTKDWPSMQETLTVSPEWSEWKLFDSRFWLRARSN 410 >gi|323436099|ref|ZP_01050432.2| PP-loop family protein [Dokdonia donghaensis MED134] gi|321496414|gb|EAQ38831.2| PP-loop family protein [Dokdonia donghaensis MED134] Length = 404 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 34/295 (11%) Query: 35 LLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93 LL+ L + + LR + + +V C I + S+ S Sbjct: 2 LLLLLCRQA------GLTIRVAHCNFNLRGVESDGDQAFVESYCKLHNIPIYIKSFDTSA 55 Query: 94 ----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 +T AARE RY E + T I+TAH +D+LET + R KG+ Sbjct: 56 YAKIEKTSTQIAARELRYQWFKELSATEGLDYILTAHHLNDELETFLINLGRGTGVKGL- 114 Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 T + ++N + RP L R+ I+ + LQ ++W ED SN D + R +R Sbjct: 115 ------TGIPEINERVVRPLLPFSRKRIKEYALQEKLAWREDSSNATDNYVRNHLRHHAI 168 Query: 210 DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR------SIIAISQDILNIDSTL 263 + A ++ Q + + +L +++ + I+ L Sbjct: 169 PSMVAAQPGILQGLQTTQQHLRQTDKLLAIYTVSLRKAYVTTRDGLQVINVPALKKHEEP 228 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFL 316 L ++ + + V +L +SGK+ R+V DR L Sbjct: 229 QAVLYQLL--------HPYNFTAWSDVYELLDAQSGKQIFSETHRLVKDRDVLLL 275 >gi|26553599|ref|NP_757533.1| cell cycle protein MesJ [Mycoplasma penetrans HF-2] gi|61216654|sp|Q8EWQ7|TILS_MYCPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|26453605|dbj|BAC43937.1| predicted cell cycle protein MesJ [Mycoplasma penetrans HF-2] Length = 295 Score = 172 bits (437), Expect = 8e-41, Method: Composition-based stats. Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 29/297 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 L+AVSGG DSM LL ++ V++ RE + ++ + V D C Sbjct: 2 KHKYLIAVSGGPDSMALLNKKRHLVEA---------VCHVNYHDREDSDNDEKIVRDYCK 52 Query: 79 RLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + V L RE RY + ++ + I+ AH +D LE Sbjct: 53 KYNLKLFVFDTHKDDVSKYKDINNLQTWYREIRYDFFEKISQELGIKKILIAHQKNDFLE 112 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + YM ++ +G+ +L + RP L ++ + + +NI + D + Sbjct: 113 SAYMSLNKNKKNLFLGI----RRKSKFRSLILIRPLLNKTKKSLEQYCRSKNIEFVIDYT 168 Query: 194 NTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N DR+ R VR+ + + D YLK+K F + + ++ I Sbjct: 169 NFWDRYSRNVVRKMMAEWDKKTFQKFYLKVKWFNLKNMFFIKLLDSKFNNWIKQDF--DI 226 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 I N L YL I P +E+++ F+ K G V R+ Sbjct: 227 NYFLKIKNNYKESLIYLFLNHIGIK------PNENKIEQIIEFINKNKNGSVKKYRL 277 >gi|239500682|ref|ZP_04659992.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB900] Length = 418 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 115/271 (42%), Gaps = 13/271 (4%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + + + L A AR+ARY Sbjct: 8 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQ 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +H + +++ AH DQ ETV +R G+ D Y ++ I RPFL Sbjct: 66 QHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLD 120 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 RE I + +Q + + +DP N D ++RV R + L + + KM++ + Sbjct: 121 LTREQIALWAVQLEVKYIDDPMNYDTHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLM 179 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMER 289 + ++ + L + + L S L F R +SA + G P + +ER Sbjct: 180 QDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVER 239 Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 + ++ KS + + + R N L+ Sbjct: 240 LRAEVIESKSDAQAALHWNQFYYVRYQNILY 270 >gi|184201576|ref|YP_001855783.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201] gi|183581806|dbj|BAG30277.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201] Length = 359 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 110/306 (35%), Gaps = 23/306 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P +L+ SGG+DS+ + + G + A+ VDH L++ + + + Sbjct: 22 APPLVLLGCSGGADSL---ALAAAAAHLQRRGTCRVGAVVVDHQLQDGSGEVAHRAAQTL 78 Query: 78 SRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + V ++ TG AAR ARY A ++ HT DDQ ETV Sbjct: 79 RGLGLDPVHVERVHVTRRGTGPEMAARLARYEAFRSVVARTGAAAVLLGHTRDDQAETVL 138 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + LSGM + + D + RP L R + + + DPSN D Sbjct: 139 LGLTRGSGTR--SLSGMPERRVED-GVLYLRPLLNVTRAETETVCAAEGLEPWLDPSNAD 195 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL------------TV 244 R R+R V L + + V A A + + Sbjct: 196 TALTRSRIRHEVLPHLEAQLGPGVGRALARTASVLGADADYLEEQAAAAYDAALLAPSRA 255 Query: 245 HMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF-LKSGKRGCV 302 + + +L + L +L + GG+ P + + + F L G+ G V Sbjct: 256 EPEHAVVLDGAVLQATPAALRRRVLARACVAAGGET--PTFERLGALEDFALGHGEAGPV 313 Query: 303 SIGRVV 308 + V Sbjct: 314 QLAGKV 319 >gi|332977368|gb|EGK14150.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Psychrobacter sp. 1501(2011)] Length = 523 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 116/337 (34%), Gaps = 40/337 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + I +A SGG DS+ L + + + V+H +++ V Sbjct: 19 KRQLLGRRIWLACSGGRDSLSLAHLCQQLFEAGKLPFLP-QLLHVNHGMQQANDIWAEQV 77 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 S+ + ++ V+ K AR+ARY + + +++ H DDQ+E Sbjct: 78 SNWAKQNQMPCRVLEIDLVKKT---EQEARQARYEAMMGVM--NHNDVLILGHHQDDQVE 132 Query: 134 TVYMRSQRDYAEKGMGLSG-------MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T+ MR G+ M + ++ + RP L RE I + + Sbjct: 133 TLLMRLFNGAGANGLSGMKEWSTKQSMANDYRCQKSIVLWRPLLSVSREQITEYANHNQL 192 Query: 187 SWCEDPSN---------TDDRF--ERVRVRRFVR-------DIDLHALYLKMKKFQDLRV 228 ++ +DP+N +D+ +R +R + A+ + QD + Sbjct: 193 AYIDDPTNIASPPIDHIVEDKTLNDRAWLRSVLLPHITQRYPKAREAMARTGQLMQDAHI 252 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 +N + + + ++ + ++ A ++ P R + Sbjct: 253 ILNEQSTADLSNVSIATNSWCAILDIAQLNDLSNARQSSVIHSWLAPTAAEL-PPSKRLV 311 Query: 288 ERVMLFL-KSGKRGCVSI------GRVVIDRRANFLW 317 E V+ ++ S+ + I R N L+ Sbjct: 312 EDVLALAQRTDANHQTSLYWDSGVYQYQIRRYQNKLY 348 >gi|203284682|ref|YP_002222422.1| cell cycle protein [Borrelia duttonii Ly] gi|201084125|gb|ACH93716.1| cell cycle protein [Borrelia duttonii Ly] Length = 439 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 24/234 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68 F+ R+L+ ++VA SGG DS +L+ + + A H +R ++ Sbjct: 14 FYKRNLLTKEKVIVAFSGGPDSTV------LLLNLKKYLNNNIVAFYFAHYIRSKSEQDL 67 Query: 69 EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E+ +V C+ I + + K + + AR+ RY + E NA+ + Sbjct: 68 EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENNASYV 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ ET+ MR + G + +N +I RP L RE+I FL Sbjct: 128 ALAHNKNDQFETLIMRFFQGSFLDGF-------VGIPVINNFIIRPLLEVSREEIEKFLS 180 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233 NI + D +N +D + R +VR + + +K+ D ++ N Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVRNNLVPVIKKIFKGYEKGLKRISDFSRELTNY 234 >gi|220904230|ref|YP_002479542.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868529|gb|ACL48864.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 377 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 70/292 (23%), Positives = 113/292 (38%), Gaps = 24/292 (8%) Query: 6 IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E RF + L P + +++A+SGG+DS L L ++ +K +S++H LR Sbjct: 19 LEVERFCLHHLALPRGSSLVLALSGGADSTALAAILSLLVPRL---HLKLRGLSINHGLR 75 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 AK + + CS L + +V ++ + G A R RYAL+ E +T A Sbjct: 76 PEAKADAAHAQKTCSILGMPCAVREADVQGLAARCRMGEEEAGRTLRYALLEEERQTSGA 135 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H +D E + +R R +G D + RP L C ++ Sbjct: 136 HFIALGHHREDLSEDILLRLVRGTGWPALG-----GMPARDDKRRLLRPLLHCAPSALKD 190 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAM 236 L + WCED SN + R R+R + + + AL + L Sbjct: 191 LLRHCGLDWCEDASNQSTIYRRNRLRLQILPLLRTENPALDRSLGHLWQLADMDRTYWQE 250 Query: 237 LIPKYLT---VHMRSIIAISQDILNIDST----LLFYLLRVSAAICGGQISL 281 + L HM +Q LN + L LLR A ++ + Sbjct: 251 TLDAALRDNPWHMEEAAHDAQAGLNGQARTALTLPRALLRSLPAAARLRLYM 302 >gi|268316527|ref|YP_003290246.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252] gi|262334061|gb|ACY47858.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252] Length = 461 Score = 172 bits (436), Expect = 1e-40, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 22/320 (6%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSW 89 DSM LL L + + V++ LR + + V C R R+ V Sbjct: 31 DSMVLLEVLRRL-------GYRPVVAHVNYRLRGADSDADEALVRRFCRRHRLPLRVARI 83 Query: 90 KNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 G + A AR+ RYA A ++ AH DDQ ET+ + R +G Sbjct: 84 DLKVRTGGRAIQATARQVRYAFFRRVALREGIDVVAVAHQHDDQAETLLLNLVRGSGLEG 143 Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207 + L L N+W+ RP L R +I ++ I W ED SN + R +R Sbjct: 144 L-LGMRPKRRLSRENVWLVRPLLPVSRAEIEAWARAEGIPWREDVSNASLHYRRAVIRHE 202 Query: 208 VRDI----DLHALYLKMKKFQDLRVKVNNA--VAMLIPKYLTVHMRSIIAISQDILNIDS 261 V + + ++ +L A + L ++ V A+ + L + Sbjct: 203 VLPLLARHFGPGVAERLAHTAELLRAYYEATFLPDLRRRWQEVANEPDRALRLEPLRMQP 262 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + L + A + +R + + + L++ + + + I R + L Sbjct: 263 PVWQQRLILEALRRWLPGAPQRHRVVAQALCLLQAQPGRRLELPQGTIWRDRDALRFRPR 322 Query: 322 VRNLPTLILYPEETTVWDGR 341 R +P+E + R Sbjct: 323 QRA-----TWPDEGLLEPDR 337 >gi|299067222|emb|CBJ38419.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CMR15] Length = 462 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 12/319 (3%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + + FV S P + VA+SGG DS LL A + ++ A+ + H L+ Sbjct: 11 VAACAAFVVSGGAPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHIHHGLQAE 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + A V + S G+ AAREARYA + ATL++T Sbjct: 69 ADAWETACARMAASAGAAFRVRRVRVSTDAGRGIEEAAREARYAALDALCAETGATLLLT 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DDQ ETV ++ R G+ M ++ + + RP+L R DI ++ Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPMA----HERRVTLLRPWLDVPRGDIEAYARAH 184 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241 ++W EDPSN D R+ R +R + + H + + A + Sbjct: 185 ALAWVEDPSNGDARYARNALRPLLAGMAGHFPAYRAALARSAAHLAEAAALIEEVAQADL 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRG 300 + +A+ + + +LR A G + + +L ++ Sbjct: 245 ARIAPAGTLAVD-GLAALSGPRQRSVLRAWLAGAGLRAVSSRRLEDLRAQLLGARADGAP 303 Query: 301 CVSIGRVVIDRRANFLWIT 319 C+ + + R WI Sbjct: 304 CIRLPGAQVRRYRGQAWIE 322 >gi|90418979|ref|ZP_01226890.1| putative ATPase, PP-loop superfamily implicated in cell cycle control [Aurantimonas manganoxydans SI85-9A1] gi|90337059|gb|EAS50764.1| putative ATPase, PP-loop superfamily implicated in cell cycle control [Aurantimonas manganoxydans SI85-9A1] Length = 410 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 17/375 (4%) Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86 SGG DS+ L++A ++ + + +F +VDH LR+ + E RYV+ V +R RI+H Sbjct: 2 SGGPDSLALVLAAIALQGTAALPQTRFHIATVDHGLRDASAAEARYVAGVAARFRISHET 61 Query: 87 VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 + W + AAAREARYAL+S+ A+ AT+I+TAH DDQ ET M +R Sbjct: 62 LRWDAPARTGNIAAAAREARYALLSDAARRFGATVILTAHHEDDQCETHLMARERGAGV- 120 Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206 +GL+GM +L ++RPFL + +++ + + DP+N D RV++RR Sbjct: 121 -VGLAGMRPVRSLASDLVLARPFLDVAGDRLKASVAAHRLPAVADPTNDDPASRRVQLRR 179 Query: 207 FVR--DIDLHALYLKMKKFQDLRVKV-----NNAVAMLIPKYLTVHMRSIIAISQDIL-N 258 + +D AL ++ + R + + AM L + + IS++ L Sbjct: 180 QIAAGALDRDALRARIAGHRSERDALEAGLGDAIAAMQAAGELRLTDAGTLEISRNALRR 239 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 + F L+ + A GG+ P + R++ L+ ++ V + Sbjct: 240 LGDDAAFTFLQRAVAAVGGRGHGPEGPATIRLLDALRGKSDAARTLAGVRAVPGETITLM 299 Query: 319 TRAVRNLPTLILYPEETTVWDGRYQF------QNLSDSLIQIGPQSYRKADVPSGIPPII 372 R + V+DGR+ + L+ G R V +P ++ Sbjct: 300 REYGRAGIAGLAATAGDLVFDGRFVVDAGAGPSHSGARLVAFGDLG-RGNPVEKTLPVLV 358 Query: 373 AQRALSSMPSKEGGK 387 A +L ++P++ GGK Sbjct: 359 AGDSLVAIPAQLGGK 373 >gi|166154184|ref|YP_001654302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu] gi|166155059|ref|YP_001653314.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335429|ref|ZP_07223673.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2tet1] gi|259533695|sp|B0B969|TILS_CHLT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|259533707|sp|B0BAU8|TILS_CHLTB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|165930172|emb|CAP03656.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu] gi|165931047|emb|CAP06610.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 321 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241 +D +N ++RF R R+R + ++ +LR ++ A + + Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + ++ I Q++L + V + + ++ V L +G Sbjct: 245 VDNERGKLLPIEQELLKTPFLAKW----VCKQFFLNEGLVASKSFLQTVYDHLMTGSTAR 300 Query: 302 VSI 304 + + Sbjct: 301 LRL 303 >gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica] gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica] Length = 426 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 52/363 (14%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + +AVSGGSDSM L +S K +A +VDH +R + E + V ++ SRL Sbjct: 11 RLALAVSGGSDSMALAYM----ISQTPGLSEKTTAYTVDHGVRSESSSEAQNVHEIVSRL 66 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I H ++ + R+ARY+ + + ++TAHT DD +ET +R Sbjct: 67 GINHRILKLDALNDTK--ELSMRQARYSKLIAAMNDDGVSTVVTAHTQDDCIETFVVRML 124 Query: 141 RDYAEKGMGLSGMCDTILYDLNLW--------------------ISRPFLRCRREDIRSF 180 R GL+G+ + ++ W + RP L + +R+ Sbjct: 125 RGSGL--FGLAGIQPRVSFNPYTWGGGGIALKQHSRTELASGWKLMRPLLGLTKSHLRNV 182 Query: 181 LLQRNISWCEDPSNTD-DRFERVRVRR------FVRDIDLHALYL--KMKKFQDLRVKVN 231 L++ NI W EDP+N + + ER VR+ + + A + ++K R+K Sbjct: 183 LVKNNIPWFEDPTNQNVEIAERNLVRKMYYEYPELIPEEFQASNVLRLLEKLNGYRIKCE 242 Query: 232 NAVAMLIPKYLTVHMR--SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGY 284 + + + L I +S++ + + L +LR I LP Sbjct: 243 TEASEVSSRLLAASQSPDGTITLSEEQVKGVLTKLPHDTLQLVLR---NILSPLSPLPDL 299 Query: 285 R-SMERVM-LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT---LILYPEETTVWD 339 + R+ L + ++ V R + ++R V P+ + L P ++WD Sbjct: 300 SLRLHRLRGLTGRFEAGNKFNLAGVDFSLRNDKWQLSREVPRRPSDHVVQLTPGRVSLWD 359 Query: 340 GRY 342 R+ Sbjct: 360 NRF 362 >gi|255073925|ref|XP_002500637.1| predicted protein [Micromonas sp. RCC299] gi|226515900|gb|ACO61895.1| predicted protein [Micromonas sp. RCC299] Length = 204 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ VSGG DS+ LL + + R + + +H R +++E +V D+ ++ Sbjct: 21 DRVVLCVSGGVDSVALLHLMVEL---RQEWALDLHILHFNHGKRAESREEEAFVKDLGAK 77 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + V + +G A AR R + + +I+ H DDQ ETV M+ Sbjct: 78 LGVEVHVRRPTKAFDTSGFQAKARAWRRDEAEKLLDAVAGQVILQGHHADDQTETVLMKM 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G +S + N RP L ++++R +L R + W ED SN D F Sbjct: 138 MR-----GCHVSNIAGMSHRAGNYG--RPLLDVSKDELRRYLTSRALEWREDASNADVAF 190 Query: 200 ERVRVRRFVRDI 211 R RVR + + Sbjct: 191 LRNRVRAELVPV 202 >gi|76789585|ref|YP_328671.1| TilS [Chlamydia trachomatis A/HAR-13] gi|237803272|ref|YP_002888466.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT] gi|237805193|ref|YP_002889347.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311681|ref|ZP_05354251.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276] gi|255317982|ref|ZP_05359228.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276s] gi|255349245|ref|ZP_05381252.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70] gi|255503782|ref|ZP_05382172.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70s] gi|255507463|ref|ZP_05383102.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis D(s)2923] gi|123606544|sp|Q3KKJ9|TILS_CHLTA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|76168115|gb|AAX51123.1| TilS [Chlamydia trachomatis A/HAR-13] gi|231273493|emb|CAX10409.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274506|emb|CAX11302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT] gi|289525886|emb|CBJ15368.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis Sweden2] gi|296435472|gb|ADH17650.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/150] gi|296436396|gb|ADH18570.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9768] gi|296438255|gb|ADH20416.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/11074] gi|296439189|gb|ADH21342.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/11023] gi|297140756|gb|ADH97514.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9301] Length = 321 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241 +D +N ++RF R R+R + ++ +LR ++ A + + Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + ++ I Q++L + V + + ++ V L +G Sbjct: 245 VDNERGKLLPIEQELLKTPFLAKW----VCKQFFLNERLVASKSFLQTVYDHLMTGSTAR 300 Query: 302 VSI 304 + + Sbjct: 301 LRL 303 >gi|117923751|ref|YP_864368.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1] gi|117607507|gb|ABK42962.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1] Length = 349 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 32/330 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 A +LVAVS G DS LL L R A DH LR AK ++ +V Sbjct: 23 QWPLSAPLLVAVSAGVDSSALLHLL------RLCYPGPLQAAHFDHALRPCAKQDLAHVQ 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C++ I V W + L A AR+ARY +++ A + A I AH +DQ Sbjct: 77 QQCAQYAIPLHVGHWLPPAQKANLAAQARQARYRFLAQTAYGLKAPFIGIAHHQEDQA-- 134 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD-------LNLWISRPFLRCRREDIRSFLLQRNIS 187 +G GL G+ + + RP L ++++ S+L I+ Sbjct: 135 --ETLLERLLLRGAGLKGLSGMRPLAPLPMAEFAQVQLLRPLLPFSKKELTSWLQGEQIT 192 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM---KKFQDLRVKVNNAVAMLIPKYLTV 244 W EDPSN D R+ R +R + L+AL + ++ + + + A A L + + Sbjct: 193 WREDPSNQDLRYTRNHIRHRLLP-SLNALGVGEAIPQRLAETALHLQQADAALQWMVVQL 251 Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + I Q+ + + L LL G ++ G R+ E + L Sbjct: 252 AQQLPIEPYQENGLQLPLQPFAELPAELRARLLDHMLHTLVGITAV-GQRAKENLWHHLS 310 Query: 296 -SGKRGCVSIGRVVIDRRANFLWITRAVRN 324 KR + + V + R L + +R Sbjct: 311 LPAKRWQMRMQGVAVTRVEQRLLVQPVLRA 340 >gi|300742497|ref|ZP_07072518.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567] gi|300381682|gb|EFJ78244.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567] Length = 469 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 7/229 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L ++ A+ VDH L+ + + ++ + L Sbjct: 128 VLVACSGGPDSLALACIAAHFARR---SDVRVGAVVVDHGLQADSAEVAASTAETLTNLG 184 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + G AAR ARY A ++ HT DDQ ETV + Sbjct: 185 LHPVLTERVQVPQGSMGPEMAARTARYGAFERAVHNTGARAVLLGHTLDDQAETVLLGLG 244 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + L+GM + + + RPFL RR D+ + ++ DP+NTD Sbjct: 245 RGSGTR--SLAGMPPVRI-ENGVTYLRPFLALRRADMLNICEAEGVAPWNDPTNTDQTLM 301 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 R R+R + L + V A + + Sbjct: 302 RARIRHTILPFLQEHLGGDVALSLARTAAVAGPDAEYLDALAAAEYARL 350 >gi|126697179|ref|YP_001092065.1| ATPase [Prochlorococcus marinus str. MIT 9301] gi|126544222|gb|ABO18464.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9301] Length = 336 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 18/253 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++IL++VSGG DSM LL ++ + + S DH E + + D Sbjct: 29 IPKGSNILISVSGGQDSMTLLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALELKD 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTF 128 C I+ S + +K ARE RY + E AKT+ + ++T HT Sbjct: 86 YCEDKNISFS--YDQANKESISSEEKAREWRYKKLCERAKTLLNTNQQKHNIYLLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLIENQIFLIRPILIFSREDTKQFCNDMKIPV 201 Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N+D + +R VR+ + ++ ++ F NN L + ++ Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSNYNNERNDL-SELAYLY 260 Query: 246 MRSIIAISQDILN 258 R + I +++LN Sbjct: 261 CRDVKGIDRNLLN 273 >gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL YB-4239] gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL YB-4239] Length = 523 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 17/232 (7%) Query: 7 ESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E +R SL P + + +SGG DSM L L + ++K AI++DH R Sbjct: 10 EVLRRVFGSLENVPTKVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLKIHAITIDHSFRAG 69 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL 121 +K E + ++ + I HS+ S + K T AR R+ +++ Sbjct: 70 SKVEAQKLTPTMNNWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPF 129 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWISRPFLR 171 + H DDQ+ET R Q + + G+ + + D +++ RP L Sbjct: 130 LFLGHHKDDQVETFVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLETKDGQVFLVRPLLD 189 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKK 222 ++DI NI + DP+N + + R +R+ V + L + K + Sbjct: 190 FYKDDIVKTCELHNIPYVIDPTNKNPKLTRRNFLRQ-VFGVTLPHMLNKHEN 240 >gi|203288215|ref|YP_002223230.1| cell cycle protein [Borrelia recurrentis A1] gi|201085435|gb|ACH95009.1| cell cycle protein [Borrelia recurrentis A1] Length = 439 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 24/234 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68 F+ R+L+ ++VA SGG DS +L+ + + A H +R ++ Sbjct: 14 FYKRNLLTKEKVIVAFSGGPDSTV------LLLNLKKYLNNNIVAFYFAHYIRSKSEQDL 67 Query: 69 EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E+ +V C+ I + + K + + AR+ RY + E +A+ + Sbjct: 68 EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENHASYV 127 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH +DQ ET+ MR + G + +N +I RP L RE+I FL Sbjct: 128 ALAHNKNDQFETLIMRFFQGSFLDGF-------VGIPVINNFIIRPLLEVSREEIEKFLS 180 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233 NI + D +N +D + R +VR + + +++ D ++ N Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVRNNLVPVIKKIFKGYEKGLRRISDFSRELTNY 234 >gi|224436971|ref|ZP_03657952.1| hypothetical protein HcinC1_03315 [Helicobacter cinaedi CCUG 18818] gi|313143443|ref|ZP_07805636.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818] gi|313128474|gb|EFR46091.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818] Length = 414 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 23/263 (8%) Query: 2 FLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FLSP+ ++R + L + + L+ SGG DS L L KI F V + Sbjct: 4 FLSPL-ALRLKEKILPLADSKNLLGFSGGVDSTALFFLLVEY-------KIPFDIAIVHY 55 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R+ A DE+ + + + + + + AR R++ E ++ Sbjct: 56 HTRKEADDELSHAQHLAKLYKKHCFISH--APQFSQNFESQARAFRFSFFDEIMQSYGYG 113 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ AH +D+ E + M+ R + L G ++ I RP +++I ++ Sbjct: 114 ALILAHQLNDRFEWLLMQLTRGAGLE--NLLGFESWRNAKISYHIVRPLESISKDEIYTY 171 Query: 181 LLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 ++ + + ED SN D F+R R + + ++ + + ++N Sbjct: 172 CKEKGLKYFEDSSNADLGFKRNAFRVRFANELTREYGRGIAKSLEYLKQDKQRLN----- 226 Query: 237 LIPKYLTVHMRSIIAISQDILNI 259 P + + + ++QD + Sbjct: 227 -TPSVKRLRLECVARLTQDSKDC 248 >gi|166363410|ref|YP_001655683.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843] gi|166085783|dbj|BAG00491.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843] Length = 324 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 125/312 (40%), Gaps = 19/312 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +LVA+S G DS+ +L RS + + DH V +V Sbjct: 22 LPKNASLLVALSAGQDSL---CLGQLLLDLRSRWGWQLAIAHCDHRWSSDRGL-VTHVRK 77 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++ + + P A AR+ RY + A+ ++TAHT D+ ET Sbjct: 78 IAEIWQLPVYI---TTAPPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETF 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS + ++++ RP L R + +F R + D +N Sbjct: 135 LYNLTRGAGSDG--LSALTWLTSLTSDIFLVRPLLNVTRGETFAFCQSRELPIWYDRANE 192 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 + R+ R R+R+ + L +++K ++ A + + R +I + Q Sbjct: 193 NLRYARNRIRQELLPYLQTNLNPQIEKHLAQTAEILEAESDYLDSIARDIFRQVIDLDQQ 252 Query: 256 ILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-GRV 307 L+ + + ++R+ A S P + +E V+ + + S+ G++ Sbjct: 253 RLDRSPLQILPLAIQRRVIRLFLAQY--LPSSPNFAEVESVVNLITGVNRDATSSLTGKI 310 Query: 308 VIDRRANFLWIT 319 ++ + N+L+I+ Sbjct: 311 RVEVQQNWLYIS 322 >gi|260943125|ref|XP_002615861.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720] gi|238851151|gb|EEQ40615.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720] Length = 463 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 10/244 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +LVA+SGG DSM L L K++ +++DH R+ + E V + Sbjct: 20 PGKLLVALSGGVDSMCLTHLLLQYKKLYD-PKLEIHTMTIDHGYRKMSSLEAHEVGRIVQ 78 Query: 79 RLRIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 H + +N T AR RY + ++ AH +D++ET Sbjct: 79 SWGAHHYIHRLSYDRNPSSITNFEEVARTMRYNAFERQCDELGIQALLLAHNLNDRIETF 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 R Q + G+G T+ + + RP L+ ++ +R ++ + W ED Sbjct: 139 LQRLQMNSTLYGLGGLKPRATMPISSKSPQQISVFRPLLQFDKQSLRETCVKSGVLWFED 198 Query: 192 PSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 +N D R R V + + L+ L + + ++LTV I Sbjct: 199 HTNADLHLTKRNLFRYMVNEYVPQEI-LRRPDLAVLSKESLLKTLNEVDEFLTVLDDRIK 257 Query: 251 AISQ 254 A+ Sbjct: 258 ALDD 261 >gi|256829531|ref|YP_003158259.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028] gi|256578707|gb|ACU89843.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028] Length = 334 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 112/298 (37%), Gaps = 43/298 (14%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + ++VA S G DS LH + R+ + A H LR + E+ + +V Sbjct: 29 LRGTRLVVAYSAGLDSTA---LLHLLHLLRAPLNLTLIAAHAHHGLRPESDRELEHAREV 85 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 CSRL IA + GL AR+ARYA + + A I TAH DD Sbjct: 86 CSRLSIAFQAAHLDIPSLQAASGRGLEECARQARYAFLESVRQEHQADWITTAHHGDDLA 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E + MR R G+G GM + RP L + +RSFL + WCED Sbjct: 146 EDIVMRLLRGTGWPGLG--GMPGVDPKRG---LLRPLLDWEKNGLRSFLEETGTGWCEDQ 200 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA----------------- 235 SN R RVR + L L + F +++ Sbjct: 201 SNASPDRTRNRVRHDI----LPLLRRENPSFAKTSMQLWTLAQIDEEYWSQALPLLPAPM 256 Query: 236 ---MLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAI----CGGQISLPG 283 +L L VH + + + IL+ L +LLR+ A CG I PG Sbjct: 257 RNFLLASALLDVHQAKRLRLYKTILDSMGPGQVLASHLLRLDTAWMRKNCGRAIQFPG 314 >gi|149280296|ref|ZP_01886418.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39] gi|149228985|gb|EDM34382.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39] Length = 461 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 31/281 (11%) Query: 5 PIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 P++ + F+ IL+AVSGG DS+ + + F + Sbjct: 3 PLQQFKTFITENHLFETGDKILLAVSGGKDSVLMAHLFKA-------SGHPFGIAHCNFN 55 Query: 62 LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR E + + +V + L + V + + AAR RY + Sbjct: 56 LRGEESVRDEHFVKMLGLMLDVPVYVTHFDTKAYAKQHGVSTQMAARTLRYEWFEQLRIE 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +I A DD +ETV + R G G+SG+ N + RP + R++ Sbjct: 116 RGYQVIALAQHQDDAMETVLLNLTR-----GTGISGLHGIFPRRGN--LIRPLMFLSRQE 168 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLK----MKKFQDLRVK 229 I ++ ++ + ED SN + R ++R V + L L +++F D Sbjct: 169 IDDLVVAHHLDFVEDSSNLSSNYIRNKIRLKVIPLLREINPGLALTFSENIRRFSDTEQV 228 Query: 230 VNNAVAMLIPKYLTVHMRSII--AISQDILNIDSTLLFYLL 268 + V + + ++ L+ LLF LL Sbjct: 229 LRQVVQEHHERLFVQRNNAFYLPIVALKKLDPARLLLFELL 269 >gi|15605575|ref|NP_220361.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|61216368|sp|O84847|TILS_CHLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3329312|gb|AAC68437.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|296437327|gb|ADH19497.1| PP-loop superfamily ATPase [Chlamydia trachomatis G/11222] gi|297748968|gb|ADI51514.1| TilS [Chlamydia trachomatis D-EC] gi|297749848|gb|ADI52526.1| TilS [Chlamydia trachomatis D-LC] Length = 321 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F SL L+A+SGGSDS+ L+ L S I F+A+ VD+ RET+ E Sbjct: 15 FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ +C + +I + + + P + AAR RY L K + + H D Sbjct: 68 DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ET+ R L GM ++Y ++ + RP L + I L + + Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241 +D +N ++RF R R+R + ++ +LR ++ A + + Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + ++ I Q++L + V + + ++ V L +G Sbjct: 245 VDNERGKLLPIEQELLKTSFLAKW----VCKQFFLNERLVASKSFLQTVYDHLMTGSTAR 300 Query: 302 VSI 304 + + Sbjct: 301 LRL 303 >gi|228470511|ref|ZP_04055378.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3] gi|228307807|gb|EEK16763.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3] Length = 494 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 110/303 (36%), Gaps = 23/303 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80 +++A+SGG+DS LL L + + A + LR+ + + +V+++C++L Sbjct: 34 VIIALSGGADSTALLWGLSLL-------GYRCVAAHCNFHLRDDESDRDEAFVTELCAQL 86 Query: 81 RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + S+ + + AARE RY E + +A I H +D +E + Sbjct: 87 GVPLERASFDTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQCIALGHHLEDNVEQL 146 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G G+ G+ + RP + I FL + D +N Sbjct: 147 MINLS-----QGAGVRGLRGMLPMREEGKYIRPLIDTPPRLIYDFLQTAEQPFVTDSTNA 201 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R VR +R + L + + + + L Y+ + + + + Sbjct: 202 DTTIRRNFVRHTLRPL-FDQLNPSFDQAVASTIHILRDLEQLQDYYIRSTLPADASQPLE 260 Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 I L L L A+I ++ L + + ++ +I+R Sbjct: 261 IAWLRQQIAPLALLYSHFASIDCDRLVL--QQLLMDCAKPERADSYARYEGRDGIIERYR 318 Query: 314 NFL 316 L Sbjct: 319 GHL 321 >gi|302338330|ref|YP_003803536.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293] gi|301635515|gb|ADK80942.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293] Length = 449 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 84/426 (19%), Positives = 161/426 (37%), Gaps = 45/426 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVS 74 + +LVA SGG DS + SV A+ +DHCLR + ++E + Sbjct: 19 LPGGRLLVAYSGGPDSTA--LLAASVALLSVSADFTLEAVYIDHCLRSQDERREERTIIQ 76 Query: 75 DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 R + ++S + S +G+ AAAR+ RY+ + AHT Sbjct: 77 AATRRWNVPLHLLSVGEGEIVSQASASGSGVEAAARQYRYSCFENLISREKFDYCLLAHT 136 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ+ET+ R A + + RPFL ++ D+ +L +RN S Sbjct: 137 LDDQVETILQRLFEGAALD-------SSLGIPERRGPFFRPFLSVKKSDLLDYLRERNFS 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK--YL 242 + D +N ++ + R R+R + + A ++ F + ++A+ L+P+ + Sbjct: 190 FSTDSTNGENFYLRNRIRNEIIPVVASVFPAYRTAIESFLAKQRMADSALRALLPEIPFR 249 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 S+ ++ + L R+ A I Q LP Y +ER++ + Sbjct: 250 KESPSSVSWDAEPFFSAPEEARRRFLYRIHAEIDSSQRRLP-YPFVERIIRMDDRPE-AL 307 Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361 + I RR + ++ +++ + RY + SL+ + + Sbjct: 308 IEAFDSRISRRGDRIF-------WDGVVVLRGK-----NRYIRRIQDGSLVNLPNIGKVR 355 Query: 362 ADVPSGIPPIIAQ-----RALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416 PP+I + +S+ ++ K L ++ + + + S G Sbjct: 356 LSFSGLTPPVIIRSRMKGDVISTTGGQKRLKKLFQEWA--LPEGLRNMIPVLEDSRGIAA 413 Query: 417 IPRLPF 422 + PF Sbjct: 414 VLGSPF 419 >gi|157414257|ref|YP_001485123.1| ATPase [Prochlorococcus marinus str. MIT 9215] gi|157388832|gb|ABV51537.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9215] Length = 338 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 18/253 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++IL++VSGG DSM LL ++ + + S DH + + + Sbjct: 29 IPKGSNILISVSGGQDSMALLNLINDL---KKIHNWTISVWHGDHQWHKKSSLYALELKS 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTF 128 C I+ S + +K ARE RY + E AKT+ + ++T HT Sbjct: 86 YCEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTLLNKNQQKHNIYLLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L + +++ RP L RED + F I Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIQSKRLLENQIFLIRPILIFSREDTKKFCNHMKIPV 201 Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N+D + +R VR+ + ++ ++ F NN L + ++ Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERIHNFSQKMSNYNNERNDL-SELAYLY 260 Query: 246 MRSIIAISQDILN 258 + + I++++LN Sbjct: 261 CKDVKGINRNLLN 273 >gi|95930473|ref|ZP_01313209.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM 684] gi|95133513|gb|EAT15176.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM 684] Length = 415 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 108/310 (34%), Gaps = 22/310 (7%) Query: 47 SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102 +DH LR+ + D+ +V ++ +RL + + + + GL A Sbjct: 3 GQHHFDVVVAHLDHGLRDESADDALFVQELAARLDLRFFKRRVEVGGLAQRNRWGLEEAG 62 Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 REAR A +SE A + +I AH DDQ ETV M R G+ + Sbjct: 63 REARRAFLSEVADQVGGAVIALAHHRDDQSETVLMHLARGCGVGGLAGMRWQE------- 115 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 RP L R +I +FL + + W ED SN ++RF+R +R V ++ Sbjct: 116 GKYIRPMLSICRNEINAFLQRHRLEWREDDSNRNERFKRNLIRHQVLPALTRYNQQTVRH 175 Query: 223 FQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC 275 +L KV + + + + + L LLR A Sbjct: 176 IAELAEKVAVEEAYWQQQLDDWLGHHACEQQGQWQVACLALCDCHPALRHRLLRELLARV 235 Query: 276 GGQISLPGYRSMERVMLFL-KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 G G + + L + + + RR + L R P + Sbjct: 236 RGTTRGLGGGHVFELDRQLFSPAPQWQMDLPCCWAARRYDHLVFRREA---PVPAATVDM 292 Query: 335 TTVWDGRYQF 344 GRY+ Sbjct: 293 VINGPGRYRV 302 >gi|254385667|ref|ZP_05000990.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptomyces sp. Mg1] gi|194344535|gb|EDX25501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Streptomyces sp. Mg1] Length = 343 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 9/232 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+ + V + LR Sbjct: 38 VLVACSGGADSMALASALAFEAPKLG---IRAGGVTVDHGLQPGSDLRAAEVVTRMTALR 94 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARY + E A + A ++ HT DDQ ETV + R Sbjct: 95 LDPVESVAVRVGREGGPEAAARDARYGALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 154 Query: 142 DYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + LSGM + RPFL+ R+ R + +++ +DP N D Sbjct: 155 GSGIR--SLSGMPEVSAGPGGPGRTNRYRRPFLQVDRQTARKACMVQSLPVWDDPHNLDP 212 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 + R R+R AL + + +++ A + + + Sbjct: 213 AYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDSWAADAEAGV 264 >gi|39938615|ref|NP_950381.1| hypothetical protein PAM_129 [Onion yellows phytoplasma OY-M] gi|61216552|sp|Q6YR87|TILS_ONYPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39721724|dbj|BAD04214.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 436 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL ++AVSGG DSM LL L + KIK + +H R + V Sbjct: 9 SLDANQTYIIAVSGGVDSMALLHCLVA-------QKIKLQVVHFNHLARPNVWKDKELVQ 61 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + + ++ + PQ A AR R + + A I+TAH DD ET Sbjct: 62 SYCLQNSLCFH--YFELNCPQKNFQAQARLLRQQKLMQIATKHQTPFILTAHHLDDLAET 119 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + R +G SGM + + +PFL + I S+ I + ED +N Sbjct: 120 ILQKITRSSTL--LGYSGMQIQTSW-QDFIFLKPFLYVPKAKIISYAAFYQIPFLEDYTN 176 Query: 195 TDDRFERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + ++R ++R V + + K+Q ++ N + +LT H Sbjct: 177 QNFTYQRNQIRHQVIPYLKTQTSFLQNIPKYQQTLLQAYNFIRKQTLLFLTKH 229 >gi|113867244|ref|YP_725733.1| ATPase [Ralstonia eutropha H16] gi|113526020|emb|CAJ92365.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ralstonia eutropha H16] Length = 439 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 11/305 (3%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG DS+ LL A + ++ G + A+ V H L+ A D R+ + +C++ ++ + Sbjct: 2 ALSGGRDSVALLHAARAAAAEWGVGA-RVVALHVHHGLQADADDWDRFCAALCAQWQVGY 60 Query: 85 SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V + G+ AAAR ARYA ++ A L++ AH DDQ+ETV +R R Sbjct: 61 FVRRVSVQPEVGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFRGA 120 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 GM + + + RP+L R +I ++ + W +DPSN D+R+ R Sbjct: 121 GVAGMAGMPGLRPLDERSGVTLLRPWLDVARAEIEAYCAANALQWVDDPSNADERYARNA 180 Query: 204 VRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ---- 254 +R + + L A ++ + + +A L R +++ Sbjct: 181 LRAHLPALVAAFPALSANVVQAAAHFAQAGALIDELAAASLAALARPGRDADTLAELDLA 240 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + + +LR G + + R L +G ++ +V+ R + Sbjct: 241 GLRALPVAHADAVLRFWLRDLGVRAPSTARLAAMREQLVAHAGGEPAIAHEGLVLRRFRD 300 Query: 315 FLWIT 319 + Sbjct: 301 RVLAC 305 >gi|86609808|ref|YP_478570.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123501245|sp|Q2JJ74|TILS_SYNJB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|86558350|gb|ABD03307.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 327 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 112/318 (35%), Gaps = 27/318 (8%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L++P +LVA SGG DS LL L + + + + DH + R+ Sbjct: 18 QQLLHPGQRLLVAFSGGQDSFCLLQILRDLQPRWGW---QIFVLHCDHRWSADETECARF 74 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + H+V + + A AR RY + + A+T + + ++ HT D+ Sbjct: 75 LQGWLQQQGLPHAVETADPIRRD---EAGARAWRYQQLEKWARTWDCSAVVMGHTASDRA 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET R G+ + + + RP L R + F Q + Sbjct: 132 ETFLWNLLRGTGAAGLSSLDWQRHLDDRDPTSAQVVRPLLGLYRWETEQFCQQHQLPVWP 191 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D R R+R V YLK L +N A +L ++ V ++ Sbjct: 192 DRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEHELVVAQAAQ 245 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQ----------ISLPGYRSMERVMLFLKSGKRG 300 Q L LR + Q P + +E + LK+ + Sbjct: 246 LWPQVYEPALPGLRRDPLRAAPLALQRQVMFQFLSLVLPHHPTFEQVEAGIQLLKADRGS 305 Query: 301 CVS--IGRVVIDRRANFL 316 G ++ + + L Sbjct: 306 RSPDYPGGHWLEVKGDHL 323 >gi|144575199|gb|AAZ44022.2| conserved hypothetical protein [Mycoplasma synoviae 53] Length = 291 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 15/192 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+AVSGG+DSM LL + V++ R + + V + C + Sbjct: 4 KYLIAVSGGADSMFLLD---------KYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEKN 54 Query: 81 RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I ++S K + AR+ARY+ + K N ++ AH D LET YM+ Sbjct: 55 NIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQK 114 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + G+ + ++ + RPFL + ++ I F + I + +D SN + + Sbjct: 115 ESNKMNFFYGI----KKRSFIFDMHVYRPFLYKYTKKQICKFCRKNKIPYRDDYSNFESK 170 Query: 199 FERVRVRRFVRD 210 + R VR+ + Sbjct: 171 YTRNIVRKSLLQ 182 >gi|241896603|ref|ZP_04783899.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella paramesenteroides ATCC 33313] gi|241870084|gb|EER73835.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella paramesenteroides ATCC 33313] Length = 324 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +R ++ A H+LVAVSGG DS+ LL L + + + SAI ++H LR A Sbjct: 11 IRHLREQQLFDANDHVLVAVSGGQDSLRLLRWL-TAGDLPKDLQPQVSAIYINHQLRSDA 69 Query: 67 KDEVRYVSD-VCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIM 123 + E V + + + + P + ARE RY ++ A+ + A I+ Sbjct: 70 QQEEALVRKVFAHTPHLQSATIRKLDWSEVPTVSVEEKAREKRYGVMFSVAEQVGANSIV 129 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH +DQ+ET+ + R + L+GM + L + RPFL + +++ + + Sbjct: 130 TAHHRNDQVETILYKLTRGSRLE--QLTGMPEKQTLTNGLKLVRPFLSLSKLELKDLIKE 187 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK---FQDLRVKVNNAVAMLIPK 240 W +D +N D ++ R R+R V H + F D + I + Sbjct: 188 PVQEWIDDYTNDDQQYARNRLRNAVIPDLQHINKQAVAHIIDFADQLTALQALADPQIKQ 247 Query: 241 YLTVHMRSIIA 251 Y+ ++ Sbjct: 248 YVAALEAGVLD 258 >gi|78780128|ref|YP_398240.1| hypothetical protein PMT9312_1743 [Prochlorococcus marinus str. MIT 9312] gi|78713627|gb|ABB50804.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9312] Length = 336 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 23/307 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + ++I+++VSGG DSM LL ++ + + S DH E + + Sbjct: 27 KLIPKGSNIVISVSGGQDSMALLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALEL 83 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAH 126 C I+ + K ARE RY + E AKT+ ++T H Sbjct: 84 KSFCEGKNISFYFD--QAKKENVFTEEKAREWRYKKLCERAKTLLKKDQGGGDIYLLTGH 141 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T D ET + R GLS + L + +++ RP L RED + F I Sbjct: 142 TSSDNAETFILNLSRGS--NFTGLSNIESKRLIENKIFLIRPILIFSREDTKQFCNDMKI 199 Query: 187 SWCEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 EDP+N+D + +R VR+ + ++ ++ F NN L + Sbjct: 200 PVWEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSNYNNERNDL-SELAY 258 Query: 244 VHMRSIIAISQDILN--IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 ++ + + I++++LN L R I Q +++ ++ + +G Sbjct: 259 LYCKDLRGINRNLLNSMCIEARCTILNRFLKEISAKQC---SSKNLTKLATSIYEKNKGQ 315 Query: 302 VSIGRVV 308 +++ + Sbjct: 316 INLQEFL 322 >gi|325971761|ref|YP_004247952.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy] gi|324026999|gb|ADY13758.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy] Length = 484 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 27/296 (9%) Query: 4 SPIESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + + +VR F+ + + I VA SGGSDS+ LLIAL + + SF A+ V H Sbjct: 7 TVLNNVRSFLAMQHIDATKRIGVAFSGGSDSLALLIALRKM-YEPSF----LHAMYVQHH 61 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 LR + + E + C +L ++ + V+ + G+ AAR RY + E Sbjct: 62 LRPSNELEAETALNRENCQKLGVSLHILDLGKGSVAHAMQTRRGGVEEAARYLRYEALYE 121 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLR 171 T + TAH DDQLET MR + + L G+ + D L + RP L Sbjct: 122 ECNRGGCTYLATAHNADDQLETTLMRLFQASSI--AALEGIRPVRIVDGYALTLIRPVLE 179 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL-------HALYLKMKKFQ 224 C + ++ N+ W ED +NT+D + R +R + L ++ + ++F Sbjct: 180 CSHAVLAEYVGLHNLVWSEDSTNTEDAYLRNTIRHTITAPILSTFTSAYDSISVMTRRFS 239 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 + + + ++ ++S L + L +L A + Sbjct: 240 EAGQLLQTLTDQELASVSFFPEGAVFSLS-WFLALAPALRELVLFRIVAQFEQKSR 294 >gi|86607208|ref|YP_475971.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab] gi|123505003|sp|Q2JRN8|TILS_SYNJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|86555750|gb|ABD00708.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab] Length = 336 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 15/296 (5%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L+ P +LVA SGG DS LL L + + + + DH ++ Sbjct: 18 RQLLRPGQRLLVAFSGGQDSFSLLQILRDLQPRWRW---QIFVLHCDHRWSADETACAQF 74 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + H+V + + P A AR RY + + A+T + + T HT D+ Sbjct: 75 LQGWLQQQGLPHAV---ETADPIRWDEAGARAWRYQQLDKWARTWSCEAVATGHTASDRA 131 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET R G+ + + W+ RP L R + F Q + Sbjct: 132 ETFLWNLLRGTGAAGLVSLDWQRRLDERDPTSAWLVRPLLGLSRWETEEFCRQYQLPVWP 191 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-----VAMLIPKYLTVH 245 D SN D R R+R V +++ + + A VA +L V+ Sbjct: 192 DRSNQDLAHGRNRLRLEVMPYLKQHFNPQLEAALNRAATLLQAEHELVVAQAAQLWLQVY 251 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 ++ + +D L L + + P + +E + LK+G+R Sbjct: 252 EPALPGLRRDPLRAAPLALQRQVMFQF-LSLLLPHHPTFEQVEAGIRLLKAGRRSR 306 >gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP] gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP] Length = 529 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 84/379 (22%), Positives = 138/379 (36%), Gaps = 50/379 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V VSGG+DS+ ++L + DH LR + ++ +V + R Sbjct: 15 RQVVVGVSGGADSV-------ALLRALLAAGAEPLVAHFDHRLRPDSAEDAAWVEALAGR 67 Query: 80 LRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + + V L AAR RY+ ++ AK ++TAHT DQ ETV Sbjct: 68 LGVPYVGGGADVGRVAQVRGWNLEDAARRLRYSFLTRTAKDAGIDTVLTAHTRRDQAETV 127 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 MR R A LSG+ + RP L RE++ ++L W ED +N Sbjct: 128 LMRLLRGEAV----LSGIAPRW-----GGVERPLLGVAREELEAYLRALGQDWREDSTNA 178 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R +R V + + L + A+L + + I Sbjct: 179 DTALTRAWLRLEVLPLLRSRFPAAEEALSGLAGRAAEDEAVLSG------LAAAIGPHTP 232 Query: 256 ILNIDSTLLFYLLRVSAAICG-----GQIS--LPGYRSMERVMLFLKSGKRGCVSIGRVV 308 ++ +L LR G GQ+S + E L L G+ V+ GR+V Sbjct: 233 LVGQPPAVLRRWLRAELDRAGLAVRAGQLSALAGALAAGETRHLTLPHGQPASVTGGRLV 292 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL-SDSLIQIGPQSYRKAD-VPS 366 + TR P P+ +Q + I++ + R +D + Sbjct: 293 LPG-------TRPDWAAPDFAFPPD--------WQLRTPQPGDRIRLSGGTRRLSDVLAE 337 Query: 367 GIPPIIAQRALSSMPSKEG 385 P + + + S +G Sbjct: 338 ARVPRAWRPQVPLLASAQG 356 >gi|326803019|ref|YP_004320837.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a] gi|326650784|gb|AEA00967.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a] Length = 472 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 102/295 (34%), Gaps = 18/295 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +AVSGG DSM LL ++ + + F I ++H LR ++ E + Sbjct: 23 LASHKPYALAVSGGVDSMVLLRCFETLQA---IHGLNFFVIHINHRLRLESEAEQEMMVA 79 Query: 76 VCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + V W++ + A AR RY + K + ++TAH DDQ+ET Sbjct: 80 YCQERDLDLKVSIWQHGADLAGNVEAKARAFRYHAFGKILKDKASLRLVTAHHSDDQVET 139 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 MR + I RP L + + I + ED +N Sbjct: 140 GLMRLVHGGHLASFKGMESLSPLYTYPKAQILRPLLEVEKASLYDIARVEGIPYQEDMTN 199 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY------LTVHMRS 248 D F+R R R+ + F+ + + + + P+ L Sbjct: 200 WDKHFQRNRFRQEIIPYLERESGNFKAHFRHFQTDLKALLDLAYPQLNQLLANLFDQEAG 259 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-----GYRSMERVMLFLKSGK 298 I + L S LL + + +P ME ++ FL G Sbjct: 260 CFRIDLEALGQYSQAEQVLL---MEMLFQRCEIPELLVFTRTGMEELVDFLNQGA 311 >gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis] Length = 556 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 13/209 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETA 66 L + VA+SGG DS+ L + DR + A+ VDH LR + Sbjct: 16 LRSSDRVAVALSGGPDSLALASMTVWWQGFVRNQVLRRDRLRSQQTPLALIVDHKLRPES 75 Query: 67 KDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMA-AAREARYALISEHAKTINATLIM 123 +E V+ L + V++ W + G AAREARYA + + T ++ Sbjct: 76 TEEAHAVAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAAREARYAALLRACGEMGRTHLL 135 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH DDQ ET +R G+ + + + + + RP L + ++ ++ Sbjct: 136 LAHHADDQAETFLLRLLHASGVVGLACMPAVAEKRTEFGRIKVVRPLLGFHKAELEAYCQ 195 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + + DP+N++ + R R+R +R + Sbjct: 196 RSRLPYIVDPTNSELSYHRNRIRHVLRQM 224 >gi|322506829|gb|ADX02283.1| ATPase [Acinetobacter baumannii 1656-2] gi|323516698|gb|ADX91079.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii TCDC-AB0715] Length = 418 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 13/271 (4%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 K AI +DH L++ + + V+ + L I + + + + L A AR+ARY Sbjct: 8 KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQ 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +H + +++ AH DQ ETV +R G+ D Y ++ I RPFL Sbjct: 66 QHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLD 120 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 RE I + Q + + +DP N D ++RV R + L + + KM++ + Sbjct: 121 LTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLM 179 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMER 289 + ++ + L + + L S L F R +SA + G P + +ER Sbjct: 180 QDASEVLEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVER 239 Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 + ++ KS + + + R N L+ Sbjct: 240 LRTEVIESKSDAQAALHWNQFYYVRYQNILY 270 >gi|154175317|ref|YP_001408589.1| PP-loop family protein [Campylobacter curvus 525.92] gi|112803929|gb|EAU01273.1| PP-loop family [Campylobacter curvus 525.92] Length = 330 Score = 170 bits (431), Expect = 4e-40, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 109/297 (36%), Gaps = 28/297 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L+ + F VD+ R +KDEV + ++ Sbjct: 19 LLAFSHGVDSTALFYILND-------AGVGFDIAIVDYNERAQSKDEVASARALAAKFDK 71 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 S S+ + AR+ARY +E ++ AH DD+ E M+ + Sbjct: 72 KCFTKSVNLSR--SNFECTARKARYEFFAEICAKNGYKNLILAHQLDDRFEWFLMQLAKG 129 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 L GM D + I RP L+ ++ + +FL +R + + D +N +F R Sbjct: 130 AGLNE--LLGMSD-FERRKDYDILRPLLKFKKSQLEAFLKERGLKYFIDETNFSHKFRRN 186 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R+ + V + +L T+ A + L Sbjct: 187 FMRQNFSE----------PFLARFSNGVIKSFELLQSDAQTLRPSFTSAADKIYLVKKDE 236 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 + I G +S + ER + ++GCV G+V + NF+ +T Sbjct: 237 SAMRGVDKVCKILGVLMSEAQRKECERCL------EKGCVISGKVAVGANENFILVT 287 >gi|224532113|ref|ZP_03672745.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116] gi|224511578|gb|EEF81984.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116] Length = 440 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 62/293 (21%), Positives = 110/293 (37%), Gaps = 25/293 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68 +F+ ++ + ++VA SGG+DS +L+ + + A H +R + Sbjct: 14 KFYKKNFLSKDRVIVAFSGGADSTT------LLLNLKYYLNNNIIAFYFAHFIRSDNEQN 67 Query: 69 -EVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATL 121 E+ +V C I + + + AR+ RY + K +A Sbjct: 68 KEIEHVKGFCDLYNIDLKIKKCDVDIKSESVRLGVSIEELARKFRYNALENALKENDANY 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH +DQ+ET+ MR + G+ + D+N I RP L R +I +FL Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLA-------GIPDVNRNIIRPLLEVSRLEIENFL 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 NIS+ D +N + + R RVR + K + + K Sbjct: 181 SLNNISFFVDSTNAQNLYLRNRVRNNLLPYIEKIFKGYEKCLKRISEFSKEFTDYFEKKE 240 Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + S D+ L+ L+F L+ G ++ Y+S+ + Sbjct: 241 FFPVEKGKYYYSFDLKTFLDFPKYLVFRLI-FKILNSEGIVAKVSYKSLNEIF 292 >gi|148238412|ref|YP_001223799.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803] gi|147846951|emb|CAK22502.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803] Length = 350 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 19/297 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+A+SGG DSM LL L + DH + ++ Sbjct: 37 LPQGTTLLLALSGGQDSMALLGLLRDLQK---HHHWTLQLWHGDHGWHPGSAAVADALAQ 93 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI------NATLIMTAHTFD 129 C + + V + TG AAAR RY+ +S+ A+ + A ++TAHT Sbjct: 94 WCDQQALPLRVSRSTAAI--TGSEAAARAWRYSELSQTAQQLNEAGAAGACTVLTAHTAS 151 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187 D+ ET+ M+ R G+G + + + RP L R++ + ++ Sbjct: 152 DRAETLLMQLSRGTDLAGLGSLRQSRPLQANSSHGPRLVRPLLDFTRDETAAICQDLHLP 211 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAMLIPKYLT 243 DPSN+D R ER R+R+ V + L +L+ +M + +V+++ L+ L Sbjct: 212 VWHDPSNSDLRIERNRIRQEVLPV-LESLHAGCSRRMAWLSERISQVHDSQNALVDLSLR 270 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + + L + LL G L R +E + + + Sbjct: 271 GLQSAGNGLQRPPLQALAADPRRLLLQRWLQQQGVQPLNA-RQLEELSRAIGPQQPP 326 >gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931] gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931] Length = 398 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 7/225 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L ++ A+ VDH L+ + + ++ + L Sbjct: 57 VLVACSGGPDSLALACIAAHFARR---SDVRVGAVVVDHGLQADSAEVAASTAETLTNLG 113 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + G AAR ARY+ A ++ HT DDQ ETV + Sbjct: 114 LYPVRTECVQVPQGSMGPEMAARTARYSAFECAVHNTGARAVLLGHTLDDQAETVLLGLG 173 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + L+GM + + + RPFL RR D+ + + DP+NTD Sbjct: 174 RGSGTR--SLAGMPPARI-ENGVTYLRPFLALRRADMLNICEAEGATPWNDPTNTDQTLM 230 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 R R+R + L + V A + T Sbjct: 231 RARIRHTILPFLQEHLGGDVALSLARTAAVAGPDAEYLDALATAE 275 >gi|292669438|ref|ZP_06602864.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648891|gb|EFF66863.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 465 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 105/304 (34%), Gaps = 20/304 (6%) Query: 13 VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV 70 L YP +LVA SGG+DS+ L ++ + G + +H +R + + Sbjct: 15 AHDLFYPVRKLLVACSGGTDSL---ALLDALDILHTAGGAQLICAHYEHGIRGADSLADA 71 Query: 71 RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 R+V C+ I V + L AAR RY + I+ AH Sbjct: 72 RFVEAFCAMRGIPFVLEAGDVPAYARMHKCSLETAARICRYDFLYRVCDERKCDAIVLAH 131 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV MR R G+ + + RP L R ++ ++ ++R + Sbjct: 132 HADDLAETVLMRILRGTGPAGLAAM-------RERDGLYLRPLLTVMRAEVEAYAVKRGL 184 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D +N R R+R + A+ + + L + ++ +A L Sbjct: 185 MPRHDATNDAMDARRNRIRHELLPELARTYNPAVRDALTRLSALAAEEDDLLAELAEDAY 244 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 T + + + L +LR+ G Y ER+ L + Sbjct: 245 THALCVGGLSIPALRALHPALQRRVLRIFWMWETGAAQDFSYLHEERMRALLAVEGTARI 304 Query: 303 SIGR 306 + Sbjct: 305 EMQG 308 >gi|308235339|ref|ZP_07666076.1| tRNA(Ile)-lysidine synthase [Gardnerella vaginalis ATCC 14018] gi|311114324|ref|YP_003985545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Gardnerella vaginalis ATCC 14019] gi|310945818|gb|ADP38522.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Gardnerella vaginalis ATCC 14019] Length = 363 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 25/286 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + R I+ +AI V+H ++E + + ++ + L Sbjct: 45 VLVACSGGRDSLALTALAVKVCASRG---IRCAAIIVNHNMQEGSAKVAQNAANTVASLG 101 Query: 82 IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V S + + G +AAR+ARYA I AK + A+ ++ AHT DDQ ETV + Sbjct: 102 VDKSLIFVESVQVKDGEKGEESAARDARYAAIINAAKDLGASAVLLAHTADDQAETVIIG 161 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD- 197 + + + I + +RP + RR + + I W +DP+N D Sbjct: 162 LRDSAGLEAVAGM---KNITVRSGIRFARPLINLRRLETTNICKDLGIEWWDDPTNGDLT 218 Query: 198 --------RF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R R+R + Y+ D+ + + ++ + Sbjct: 219 PSDVELPKSYPLRSRIRHTLMP------YISRFFATDMTLLLAKGAKFAQDDLDYINSQV 272 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 I + IL + + ++++ + Q + R + R + Sbjct: 273 DIIERETILKQNYDSCAHEVKIAISPLTKQHTSIRRRIIARALTAA 318 >gi|78777932|ref|YP_394247.1| tRNA(Ile)-lysidine synthetase-like [Sulfurimonas denitrificans DSM 1251] gi|78498472|gb|ABB45012.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfurimonas denitrificans DSM 1251] Length = 329 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 38/310 (12%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + L+A SGG+DS L L I F V++ +RE ++DEV Y Sbjct: 8 SKLRDKKNLLAFSGGADSSALFFLLTQ-------ESIPFDIAIVNYGIREQSRDEVAYAK 60 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ + I + + K + A ARE RY S+ + + ++TAH D+ E Sbjct: 61 ELSAANNITCHI--YNAPKIEQNFEAKAREIRYEFFSKLSLENSYENLLTAHHLGDRFEW 118 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ + ++GM ++ + I RP L + ++ +L + + ED SN Sbjct: 119 FLMQFCKGAGC--AEIAGM-QSVQKRGSYTIIRPLLHLEKRELIEYLHRIKARYFEDESN 175 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D+ +R R H L + + +R A L + ++ I + Sbjct: 176 LDESIKRNYFRHN------HTTPLLERHLEGIRKSF----AYLDEDREALIEKADIKVID 225 Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR-VV 308 LN + +F + + Q+ + ER +L ++ + +GR V Sbjct: 226 KFAYFKRLNTQRSNIFAIDKYL----KSQLYMLSAN--ERDLLR----EQKSLVVGRKFV 275 Query: 309 IDRRANFLWI 318 I++ F++I Sbjct: 276 INQSRKFVFI 285 >gi|72383087|ref|YP_292442.1| aromatic amino acid beta-eliminating lyase/threonine aldolase [Prochlorococcus marinus str. NATL2A] gi|123773751|sp|Q46ID9|TILS_PROMT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|72002937|gb|AAZ58739.1| Aromatic amino acid beta-eliminating lyase/threonine aldolase [Prochlorococcus marinus str. NATL2A] Length = 326 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 27/320 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + IL+A+SGG DSM LL + + + + + +H +++ + Sbjct: 14 LPSNSTILLAISGGQDSMALLKLIIDL---KRLHQWQVEVWHGNHQWHAKSEETEDELKL 70 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128 C + +I+ S K K + AR+ RY + AK T I+T HT Sbjct: 71 WCLKNQISFH--SNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+ ETV M R GL+ + + + N+ ++RP L R + N+ Sbjct: 129 TDRAETVIMNLARGT--DLTGLTTLKEQRTIENNIDLTRPLLIFNRNETLEICKDFNLPI 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 DPSN + R ++R+ + L L K V N + + Sbjct: 187 WIDPSNENINLTRNKIRKEI----LPILNSIYKGADSRIASVANRLESYNEDQKLFAKIA 242 Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYR----SMERVMLFLKSGKRG- 300 I + +N S + + L + ++ R +E + + K Sbjct: 243 IQFCQGEKINSLSRIKLFGLTNSIRQIILSNWLKTMGVKRVTALQIEEINTKVSQRKPPG 302 Query: 301 CVSIGR-VVIDRRANFLWIT 319 + + +I ++I+ Sbjct: 303 SIHLHGDFLIRWNKEAIYIS 322 >gi|227538442|ref|ZP_03968491.1| tRNA(Ile)-lysidine synthetase [Sphingobacterium spiritivorum ATCC 33300] gi|227241724|gb|EEI91739.1| tRNA(Ile)-lysidine synthetase [Sphingobacterium spiritivorum ATCC 33300] Length = 443 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 83/436 (19%), Positives = 144/436 (33%), Gaps = 45/436 (10%) Query: 3 LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ +E +V R I++AVSGG DSM + + Sbjct: 1 MNVLERFHRYVSQNRLFGPDDKIVLAVSGGKDSMLMARLFLD-------SNYPVIIAHCN 53 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114 LR E + + + V I V + + + + AARE RY E Sbjct: 54 FSLRGEESDLDQQLVEAFGEEYGIPVFVKRFDTEAYAEENRISIQMAARELRYQWFEELR 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 I A +D +ETV + R G GL+G+ I RP L R Sbjct: 114 IAQGCAYISVAQHRNDHIETVLLNMIR-----GTGLAGLQGIQPKRE--RIIRPLLFLRA 166 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ + + + +D SN ++ R ++R + + ++ F K A Sbjct: 167 AEVAEAVRVLQVPYRDDQSNFSIKYARNKIRLNIVPLMEEINPEFVQSFASSIDKFAGAY 226 Query: 235 AMLIPKYLTVHMRSIIAISQ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 L+ ++ +S+ S+ ++L +L +L + Q +E ++ Sbjct: 227 -QLLQDFVHPVRQSLFKESKASTEVLIEKKSLEPHLTNAALLYELFQPYHFQKNVLEDLV 285 Query: 292 LFLKSGKRGCVS--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-RYQFQNLS 348 ++G R+++DR L T I +E W G + + S Sbjct: 286 ATWENGTGRIFESDSHRLLVDRTHLILHPTGPEVEARVCIEESDEQAEWKGFHFNIEKSS 345 Query: 349 DSLIQ----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404 + I I + K P I Q P GK ++ + Sbjct: 346 SADIVKEKHIAKIDWDKLQFPLQIRS--WQEGDIFYPLGMEGKKKVSDY----------F 393 Query: 405 AYAFSISFGKVFIPRL 420 SF K IP L Sbjct: 394 IQQKINSFAKARIPIL 409 >gi|91784172|ref|YP_559378.1| PP family ATPase [Burkholderia xenovorans LB400] gi|91688126|gb|ABE31326.1| ATPase, PP-loop superfamily [Burkholderia xenovorans LB400] Length = 476 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 135/402 (33%), Gaps = 30/402 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+V F + L A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LEAVGFSLSRLPANARIAIAFSGGVDSSVLLDAAVRVA-----GASRCVALHVHHGLSAH 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + S+ G+ AAAR+ARY + + + + Sbjct: 69 ADAWLAHCEAFARERGVEFAAERVAVSRDTGVGVEAAARDARYRALDDMCASRGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + RP L R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PKYLPAKASATRVRPLLHLLRAQLEQYASAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SN D R+ R +R V L + + + L+ ++ + Sbjct: 188 ALRWIDDESNADTRYARNALRHDVMP-ALAVHFPGFRDALARTAAHAASAQRLLDEFARI 246 Query: 245 HMRSIIAI------SQDILNIDSTLLFYLLRVS-----AAICGGQISLPGYRSMERVMLF 293 M + +L +D L+R A R + R + Sbjct: 247 DMEAASRDEGRALSHDALLALDDERALNLMRYWMRTLGLAAASSARLGDALRQL-REIGA 305 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNL 347 G V + ++ + L W G ++ Sbjct: 306 AGEGHALRVDHAGHALRSYRGLVYWEAGDSSGPADETALAARAVSELAWQGESVWRLPQW 365 Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 + I + P IP + +RA+SS S+ GG+ + Sbjct: 366 RGTFIFADASAGE----PDAIPVSVLRRAVSSARSRSGGERM 403 >gi|320105913|ref|YP_004181503.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4] gi|319924434|gb|ADV81509.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4] Length = 358 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 20/251 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 SL P I VA S G+DS LL+ALH R I SA+ + H R + + + Sbjct: 15 SLFRPGDRIAVAASAGADSTSLLLALHE---QRVALGIGLSAVHLHHGTRGAESDRDRDF 71 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V +C+RL + + L AAR AR L T++ TAHT Sbjct: 72 VQALCARLDVPLRLAESDIPAAAEADGETLEEAARNARLELFRTLMLGGEVTMVATAHTQ 131 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R +G+ + L + RP L R + +FL R +W Sbjct: 132 DDQAETVLAKLLRGAWTEGLSGIHPILFLGEGERLPVIRPMLHLSRVQVEAFLEARGEAW 191 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 CED SNT + R R+R + M K ++ ++ +A+A R Sbjct: 192 CEDSSNTSTKHMRNRIRHDL-----------MPKMREFNPQIASALATTAELAREEEARW 240 Query: 249 IIAISQDILNI 259 I I + + + Sbjct: 241 AIEIERLLPQL 251 >gi|194476912|ref|YP_002049091.1| possible MesJ-like protein [Paulinella chromatophora] gi|171191919|gb|ACB42881.1| possible MesJ-like protein [Paulinella chromatophora] Length = 343 Score = 170 bits (430), Expect = 6e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 6/218 (2%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +LVA+SGG DSM L+ L+ + + K +H R + +S Sbjct: 34 LPKRSTLLVAISGGQDSMALIKLLNDL---KRIYKWNLHLWHGNHRWRLESDKITCELSR 90 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 S+ + +++P A AR+ RY + + A+ +N I+TAHT D+ ET+ Sbjct: 91 WASQELLPFYT---DSAQPPPNSEAKARQWRYESLKQLAEKLNCHKIVTAHTGSDRAETL 147 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R G+ ++ NL + RP L R D + + + DPSN Sbjct: 148 LLNIARGSNRHGIASLPHIRYLVNSNNLSLVRPLLNFSRLDTAAICQKWKLPIWYDPSNE 207 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 F R R+R + + + L K Sbjct: 208 SLYFSRNRIRHQILPVLEQLHPGASLRISSLASKFQQE 245 >gi|330838705|ref|YP_004413285.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] gi|329746469|gb|AEB99825.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] Length = 513 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 82/406 (20%), Positives = 134/406 (33%), Gaps = 42/406 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + + I+VAVSGG+DSM LL L + R+ + +H +R E ++++ YV+ Sbjct: 28 LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 84 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C +A SV V + + L AARE RYA + + A I AH DD Sbjct: 85 AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV R G GL G+ + + RP L C +E++ + I Sbjct: 145 QAETVLQHILR-----GAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 197 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSI 249 D +N R +R + L L + + A L + + Sbjct: 198 DATNDAAEARRNYLRLEI----LPRLTAHINASAGAALVRLAEAARADDALLDEMAHAAF 253 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + L A L R + R+ + Sbjct: 254 SRVVCGEGRAAGAAHESLALSRTAF--RAEPLALQRRIVRLAARAFVDES---------- 301 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWD----GRYQFQNLSDSLIQIGPQSYRKADVP 365 W R V + +++ WD R+ + ++ + Sbjct: 302 -----HDWGWRQVEQVRRMMVEGRGGLSWDLPGCVRFFLDGKRGVFLVGAIRTAHEEGGA 356 Query: 366 SGIPPIIAQRALS-SMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410 G P + A + G PL AP + + + + F Sbjct: 357 GGRPLSSHRTAGGMAESDLLSGIPLRAPGATRLPALGIALVADFVR 402 >gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Pichia pastoris CBS 7435] Length = 517 Score = 169 bits (429), Expect = 7e-40, Method: Composition-based stats. Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 33/287 (11%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V+ F L P + +++SGG DSM L L + + G ++ A++V+H R+ ++ Sbjct: 14 VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLI 122 E V + + L + H ++ K + AR RY I ++ + + Sbjct: 71 EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----------LNLWISRPFLRC 172 H +DQ+ET +R +++ G+ M D Y + I RP L Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTI--FGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNI 188 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV--------RDIDLHALYLKMKKF 223 R++DI S+ + + W ED +NTD R +R + + + + + Sbjct: 189 RKKDIYSYCRELEVPWFEDHTNTDSSLTFRNLMRSVYQKGDIIIPKTLTQQHILQVISEI 248 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + + +++ L + + I + L +L+ Sbjct: 249 ESFQQSIYSSLEELRHELNRL---GQIWYDPATFRLSLLLSGQILKR 292 >gi|326317608|ref|YP_004235280.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374444|gb|ADX46713.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 349 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 71/341 (20%), Positives = 116/341 (34%), Gaps = 57/341 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA+SGG+DS LL A + + A+ V H L+ A + +C RL Sbjct: 17 PLGVALSGGADSTALLHACAARWPG------QVHALHVHHGLQVAADGFEAHCRALCERL 70 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL------------------ 121 + V AAR RY + A+ Sbjct: 71 DVPLRVARVDARHAAGESPEDAARRHRYEALRTLAEGEGVVAVVERSPDSGSGSDSGQGG 130 Query: 122 --------------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 I A DDQ+ETV + R G+ Sbjct: 131 SRDGKEGGNSMTEVQPALASIALAQHADDQVETVLLALSRGAGVAGLAAM---PAFWRRG 187 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 + RP L DIR++L R W EDP+N D+R+ R R+R + L A + + + Sbjct: 188 GMDWHRPLLDVAAADIRTWLTARGEGWVEDPTNADERYTRNRIRARLLP-ALEAAFPQFR 246 Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRS------IIAISQDILNIDSTLLFYLLRVSAAIC 275 A+L+ + +++ I A+ + L + LR + A Sbjct: 247 DTFARSASHAAEAAVLLRELAEADLQAIGQPPRIAALRALGRERQANALRHWLRTAHATT 306 Query: 276 GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L +++V G R + +GR ++R+ + L Sbjct: 307 PTAAQL--GELLDQVAACATRGHRIRIKVGRGFVERQGDEL 345 >gi|171920688|ref|ZP_02931912.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903424|gb|EDT49713.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 326 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 18/206 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L R+ V++ RE+A + V D Sbjct: 12 ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + A AR RY E K N + AH FDD Sbjct: 63 CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + + RP L R++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNFVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217 +N D +ER RVR+ + + L+ +Y Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204 >gi|212529304|ref|XP_002144809.1| PP-loop family protein [Penicillium marneffei ATCC 18224] gi|210074207|gb|EEA28294.1| PP-loop family protein [Penicillium marneffei ATCC 18224] Length = 633 Score = 169 bits (428), Expect = 9e-40, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 140/456 (30%), Gaps = 97/456 (21%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I +AVSGG DSM L + R + A VDH RE + +E V+ S Sbjct: 42 PRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFVVDHKFREESTEEAHMVTKWLS 101 Query: 79 RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I V++ + K Q AR RY + ++ H DD +E Sbjct: 102 NLDIQSEVLTLDWLPGESPKKQMAFETLARTKRYQALGIACLENRLNTLLIGHHLDDNVE 161 Query: 134 TVYMRSQRDYAEKGMG-------------------------LSGMCDTILYD-------- 160 T +R +G+ + G + +D Sbjct: 162 TGLLRMTPTAQLEGLAGIAPVARIPECHGLWGVSESGSIETIRGRQRSFEFDLKEGKMTH 221 Query: 161 ------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF 207 + + RP L + I + + + DP+N+D R +R Sbjct: 222 FSTVDWKFDMTTGGVLLCRPLLPFYKSSILETCREAKVPYVTDPTNSDPTLTIRNTIRNL 281 Query: 208 VRDIDLHA--LYLKMKKF-QDLRVKVNNAVAM---LIPKYLTV---HMRSIIAISQDILN 258 + L M F + RV + + ++ L+ + S + + L Sbjct: 282 LASDKLPRALRPASMSTFLANNRVSLLDIMSETDKLLRDCQLLKFYPNTSTMEVMFPTLP 341 Query: 259 IDS------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG-----KRGCVSIGRV 307 I S +L LR I + + R+ +R ++ V Sbjct: 342 IHSSDAQNYRILAAALRRIVNIITPRPEV--KNQALRLYERFAHEIFTGQQRNDFTVAGV 399 Query: 308 VIDRRA-----------NFLW-ITR--------AVRNLPTLILYPEETTVWDGRYQFQ-- 345 + + +W I+R + + L +WD RY FQ Sbjct: 400 HFRLQESPNNKDTGVLFDNIWHISRTPFMAGTEPILEIDNLSDEWSTPVLWDNRYWFQFR 459 Query: 346 -NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSM 380 N + P AD P ++ L+S+ Sbjct: 460 FNRESASDPNDPLKAGSADGAE-RPSALSAEELASL 494 >gi|152993772|ref|YP_001359493.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1] gi|151425633|dbj|BAF73136.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1] Length = 323 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 113/294 (38%), Gaps = 26/294 (8%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A S G DS L L I+F VD+ +RE +K+E+ + + ++ Sbjct: 16 AFSAGVDSSALFFLLIE-------NNIRFDIAIVDYNIREQSKNELAHAKALAKEHKLFC 68 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + + T + AR+ RY +T ++TAH +DQLE + MR + Sbjct: 69 HTI--QAPMFDTHFESKARKFRYKFFESLIQTEGYDNLITAHQLNDQLEWLLMRLTKGAG 126 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 L G+ + + + N + RP L ++++ +L + N + D SN D ++ER Sbjct: 127 VSE--LIGL-EPVTHRENYTLVRPLLEYSKDELLIYLKENNHPYFIDESNIDVKYERNLF 183 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 R+ D + +K+ D K ++ T II + + Sbjct: 184 RKQFSDPLIAKYKEGIKRSFDYLRKDKKSLEKDFETIFTEKKLKIIKLH---------TI 234 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 ++ + L + + + ++ V G V++ + + L+I Sbjct: 235 SAKIKAADLSLKELGYLLSAAQRQEI-----AKEQTLVIGGEWVVEIQDDLLYI 283 >gi|124026824|ref|YP_001015939.1| ATPase [Prochlorococcus marinus str. NATL1A] gi|254789040|sp|A2C5B5|TILS_PROM1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|123961892|gb|ABM76675.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. NATL1A] Length = 326 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 64/320 (20%), Positives = 115/320 (35%), Gaps = 27/320 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + IL+A+SGG DSM LL + + + K + +H ++ + Sbjct: 14 LPSNSTILLAISGGQDSMALLKLIIDL---KRLHKWQVEIWHGNHQWHSKSEKTEEELKL 70 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128 C + +I+ S K K + AR+ RY + AK T I+T HT Sbjct: 71 WCLKNQISFH--SNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+ ETV M R GL+ + + + N+ ++RP L R + N+ Sbjct: 129 TDRAETVIMNLARGT--DLTGLTTLKEQRTIESNIDLTRPLLIFNRNETLEICKDFNLPI 186 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 DPSN + R ++R+ + L L K V N + + Sbjct: 187 WIDPSNENINLTRNKIRKEI----LPILNSIYKGADSRIASVANRLESYNEDQKLFAKIA 242 Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYR----SMERVMLFLKSGKRG- 300 I + +N S + + L + ++ R +E + + K Sbjct: 243 IQFCQGEKINSLSRIKLFGLTNSIRQIILSNWLKTMGVKRITALQIEEINTKVSQRKPPG 302 Query: 301 CVSIGR-VVIDRRANFLWIT 319 + + +I ++I+ Sbjct: 303 SIHLHGDFLIRWNKEAIYIS 322 >gi|260887811|ref|ZP_05899074.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] gi|260862487|gb|EEX76987.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185] Length = 500 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 82/406 (20%), Positives = 134/406 (33%), Gaps = 42/406 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74 L + + I+VAVSGG+DSM LL L + R+ + +H +R E ++++ YV+ Sbjct: 15 LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 71 Query: 75 DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C +A SV V + + L AARE RYA + + A I AH DD Sbjct: 72 AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 131 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV R G GL G+ + + RP L C +E++ + I Sbjct: 132 QAETVLQHILR-----GAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 184 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSI 249 D +N R +R + L L + + A L + + Sbjct: 185 DATNDAAEARRNYLRLEI----LPRLTAHINASAGAALVRLAEAARADDALLDEMAHAAF 240 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + L A L R + R+ + Sbjct: 241 SRVVCGEGRAAGAAHESLALSRTAF--RAEPLALQRRIVRLAARAFVDES---------- 288 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWD----GRYQFQNLSDSLIQIGPQSYRKADVP 365 W R V + +++ WD R+ + ++ + Sbjct: 289 -----HDWGWRQVEQVRRMMVEGRGGLSWDLPGCVRFFLDGKRGVFLVGAIRTAHEEGGA 343 Query: 366 SGIPPIIAQRALS-SMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410 G P + A + G PL AP + + + + F Sbjct: 344 GGRPLSSHRTAGGMAESDLLSGIPLRAPGATRLPALGIALVADFVR 389 >gi|120610995|ref|YP_970673.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1] gi|120589459|gb|ABM32899.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1] Length = 347 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 115/339 (33%), Gaps = 55/339 (16%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA+SGG+DS LL A + A+ V H L+ A + +C RL Sbjct: 17 PLGVALSGGADSTALLHACAQRWPG------QVHALHVHHGLQAAADGFETHCRALCGRL 70 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL------------------ 121 + + AAR+ RY + + A Sbjct: 71 GVPLRIARVDARHAGGESPEDAARQRRYEALRDLAGGQQGAHQAGTDGVMPEMEAGQGGP 130 Query: 122 ------------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 + A DDQ+ETV + R G+ + Sbjct: 131 GGDGDPDRPAAGRPVLASVALAQHADDQVETVLLALSRGAGVAGLAAM---PAFWRRGGI 187 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 RP L D+R++L R W EDP+N D+R+ R R+R + L A + + + Sbjct: 188 DWHRPLLDVAGADVRAWLTARGEGWVEDPTNADERYTRNRIRAGLLP-ALQAAFPQFRDT 246 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRS------IIAISQDILNIDSTLLFYLLRVSAAICGG 277 A+L+ + +++ I + + LL + LR + A Sbjct: 247 FARSASHAAEAAVLLRELAGADLQATGLPPRIAVLRALGRERQANLLRHWLRTAHATTPT 306 Query: 278 QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L ++++ G R + +GR + R+ + L Sbjct: 307 AAQL--GELLDQIAACATRGHRIRIKVGRGFVVRQGDEL 343 >gi|294085869|ref|YP_003552629.1| putative ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Candidatus Puniceispirillum marinum IMCC1322] Length = 444 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 25/365 (6%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A+SGG+DS L + + AI VDH +RE A E V+ + I Sbjct: 34 ALSGGADSTALCLLMSRFAVASGKAH---RAIIVDHGIRENAGAEAARVAARMQKFGINV 90 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + + P+TG+ A AR R+ ++ HA+ NA ++ H DQ ET+ MR +D Sbjct: 91 KIEKVSDKAPETGIQAWARRQRFEIMLAHARRDNA-ALLVGHHAGDQAETIAMRLGKDSG 149 Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 +GL+GM T + + I RP L + + + +DPSN D RFER+R+ Sbjct: 150 L--VGLAGMKRT-SWRAGVPIGRPLLDWPADRMADICRIFACEFEDDPSNLDRRFERIRL 206 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSIIAISQ------ 254 R+F+ + A K+ + D + ++ +A + + + + + Sbjct: 207 RQFM--MQDKAYGAKLCRLGDAARQLLAMLDQTLADSLARDIRLDAAGYARLPDYRTDTK 264 Query: 255 -----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 + ++ + GGQ P Y ++ R+ ++ G +S V Sbjct: 265 HDATTYLADMPEIAWHRAMGRLLHQVGGQTYAPSYEALCRLRTRMQRGLSSTLSACLVTP 324 Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-LSDSLIQIGPQSYRKADVPSGI 368 ++L + R L + + ++ G + + + ++ G + + + Sbjct: 325 AGNTDYLVVREVGRTLQEQPVETDLDAIFAGCWHVTSKIPGKVLAFGHTKLAQTPSRAAL 384 Query: 369 PPIIA 373 PP Sbjct: 385 PPEWD 389 >gi|197294532|ref|YP_001799073.1| Cell cycle protein [Candidatus Phytoplasma australiense] gi|171853859|emb|CAM11821.1| Cell cycle protein [Candidatus Phytoplasma australiense] Length = 435 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 18/249 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++AVSGG DSM LL L S K K + +H R A + + C + +I Sbjct: 14 IIAVSGGVDSMVLLDFLWS-------QKYKLKVVHFNHLKRLNAIKDKNLIQSYCDQRKI 66 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ AR R + + AK ++TAH DD ET+ + R Sbjct: 67 PFY--YFELQLNPQNFQTEARLLRQEKLKQIAKKYQTPYVITAHHLDDLAETILQKISRG 124 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G SGM + ++ +++ +PFL + +I ++ + I++ D +N D ++R Sbjct: 125 STL--LGYSGMQPKLFFEEFIFL-KPFLYLAKAEIIAYAQKNKIAYLSDYTNQLDIYQRN 181 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRV--KVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 ++R V + L K Q+++ + + I K ++ A + + Sbjct: 182 QIRNHV----IPYLKEKTNFLQNIKKFSCLLSETQDFIRKQTLFFIQHNKAPKESFFSFQ 237 Query: 261 STLLFYLLR 269 F+L++ Sbjct: 238 KDTNFFLIK 246 >gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892] gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892] Length = 806 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 59/322 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +AVSGGSDSM L +++ ++ +A VDH R + E + V+ L Sbjct: 75 RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYIVDHKYRPESSQEAQSVAKRVENL 134 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V++ + + + G AR RY ++ + ++ H DD +ET Sbjct: 135 GVQSKVLTLQWPEGGILTKKGFETQARMLRYQILGKACVKDGVRALLLGHHQDDNVETAL 194 Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160 MR + + + G+ GL G M TI + Sbjct: 195 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLVTSLQDILKSTNMDGTISHPSFRMP 254 Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 +++ RPF + + + + I + D +N D F R V Sbjct: 255 SRTINFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQEHKIPFVLDSTNEDRTFTIRNTV 314 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261 R+ + +L L+ L K ++ + I + + Sbjct: 315 RQLLNSENLLPRALQRPSILSLVDKSREQTEKFRDLCESILKKVEILSLDTRFGTMVVKM 374 Query: 262 TLLFYLLRVSAAICGGQISLPG 283 ++ L + + LP Sbjct: 375 PIISELPKQQINAVQARTPLPD 396 >gi|325518591|gb|EGC98254.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. TJI49] Length = 303 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 72/302 (23%), Positives = 115/302 (38%), Gaps = 22/302 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGAALSGVPSDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A V + +RL +A + + + G+ A+ARE RYA + + A + Sbjct: 69 ADAWVAHAEATAARLGVAFDAMHVEVPRDSGLGIEASARERRYAALDAMCERHGAAALWI 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + RP LR R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGACVERVRPLLRLLRAQLERYAAGR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 ++W +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 ELAWIDDESNGDTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICGGQISLPGYRSMERVMLFLK 295 + + L+ D+ + F LLR G + + +M L+ Sbjct: 244 AELDFAGVARDDGRALSRDALMAFDDERGANLLRYWMRTLG--LPGASAARLASMMHQLR 301 Query: 296 SG 297 Sbjct: 302 DA 303 >gi|239629122|ref|ZP_04672153.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239519268|gb|EEQ59134.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 514 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 64/362 (17%), Positives = 110/362 (30%), Gaps = 84/362 (23%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR + L ++ AVSGG+DS+ LL L + D +K A+ V H LR Sbjct: 11 QRVRRTIEEYHMLDPGDRVIAAVSGGADSVCLLTLLCGMKKD---WDLKLMAVHVHHGLR 67 Query: 64 -ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTG------------LMAAAR--- 103 + A + +V +C L I V S+ L AR Sbjct: 68 GQEADRDADFVRALCEELEVTCHIIKVDVRKYASENGMSEEEAGRYLRYEALEREARWWE 127 Query: 104 -----------------------------EARYALISEHA----KTINAT---------L 121 R + Sbjct: 128 DSDGCGGEDWDCDGGRQRRDGEGRDCDGGRQRRDGEGRDCDSGRQRCGGETGDCRNKRVK 187 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AH DDQ ET+ R G+ + + I RP L R DI +L Sbjct: 188 IAVAHHSDDQAETILHNLFRGSGLGGL-------KGISYVRGRIIRPLLDIGRRDIVEWL 240 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAV--- 234 + +W +D +N+ + R R+R + + + + L + + + Sbjct: 241 EENGCAWVQDSTNSSGHYTRNRIRSNLLPLIEAEVNQGAAGNILRMGKLASQADEYLRAQ 300 Query: 235 -AMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292 I ++ I D+L + ++ Y++ G G +++V+ Sbjct: 301 GECWIKGHVVRDGPEHFLIPCDLLQAEPEIIRSYVVMELLKRLAGSARDLGLIHVQQVLA 360 Query: 293 FL 294 Sbjct: 361 LA 362 >gi|318043039|ref|ZP_07974995.1| MesJ-like protein [Synechococcus sp. CB0101] Length = 345 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 119/318 (37%), Gaps = 20/318 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +L+AVSGG DSM L+ L + + + DH LR + + + Sbjct: 37 LPNGASLLLAVSGGQDSMALVGLLRDLQ---RLHQWRLQLWHGDHRLRADSSRQASELRQ 93 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + SW +P AAAR RY+ + A+ A ++T HT D+ ET+ Sbjct: 94 WAQHQGLVVQIESWGEPQPS---EAAARAWRYSALEAAARHCGARYVVTGHTASDRAETL 150 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R +G L+ + +L + RP L R + Q + D SN+ Sbjct: 151 LLQLARGSHRRG--LASLQPQRALAADLSLVRPLLLFSRLETEEIREQLGLPLWLDASNS 208 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253 + + R R+R+ V + ++ + ++ + Sbjct: 209 EPCYSRNRLRQEVLPVLEQLHPGASRRISGVAERLAQEQQSHDELLALALAGLLAEQPAP 268 Query: 254 ------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IG 305 +D++ +++ LL+ + G SLP ++ ++ L+ + G Sbjct: 269 EQALRRRDLIALNAANQRQLLQHWLGL-QGVSSLPA-EQLQALLRRLEPSRGPGSHALAG 326 Query: 306 RVVIDRRANFLWITRAVR 323 + LW++ R Sbjct: 327 GFALHWDRQHLWLSHPNR 344 >gi|123967074|ref|YP_001012155.1| ATPase [Prochlorococcus marinus str. MIT 9515] gi|123201440|gb|ABM73048.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9515] Length = 338 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 18/253 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + A +L++VSGG DSM LL ++ + ++ + DH E ++ + + Sbjct: 29 IPDGAKLLISVSGGQDSMALLNLINDMKMQHNWF---VNIWHGDHQWHEKSETYALELKN 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTF 128 C++ I+ +K AR+ RY ++E A + ++T HT Sbjct: 86 YCNQKNISFFFDR--ANKQTISSEEKARDWRYKKLTERANQLFIENQKEIDIYLLTGHTN 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D ET + R GLS + L + ++++ RP L RED + F + I Sbjct: 144 TDNAETFLLNLARGS--NYAGLSYIEKKRLLEPHIFLIRPLLIFSREDTKKFCQLQKIPI 201 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N D + +R +R+ + ++ F + N L K + Sbjct: 202 WEDPTNYDLKIKRNLIRKKIIPTLETMYPGCSTRINNFAEKMRNFKNEQDDL-SKLAFLS 260 Query: 246 MRSIIAISQDILN 258 + + +++LN Sbjct: 261 CKDTNGVKRELLN 273 >gi|71894625|ref|YP_278733.1| hypothetical protein MS53_0615 [Mycoplasma synoviae 53] Length = 286 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG+DSM LL + V++ R + + V + C + I Sbjct: 2 IAVSGGADSMFLLD---------KYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEKNNIK 52 Query: 84 HSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++S K + AR+ARY+ + K N ++ AH D LET YM+ + + Sbjct: 53 LEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQKESN 112 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ + ++ + RPFL + ++ I F + I + +D SN + ++ R Sbjct: 113 KMNFFYGI----KKRSFIFDMHVYRPFLYKYTKKQICKFCRKNKIPYRDDYSNFESKYTR 168 Query: 202 VRVRRFVRD 210 VR+ + Sbjct: 169 NIVRKSLLQ 177 >gi|16330873|ref|NP_441601.1| hypothetical protein slr1278 [Synechocystis sp. PCC 6803] gi|6136631|sp|P74192|TILS_SYNY3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1653367|dbj|BAA18281.1| slr1278 [Synechocystis sp. PCC 6803] Length = 330 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 21/313 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + ILVAVSGG DS+ LH + + + DH T +V + Sbjct: 21 LQGTRILVAVSGGQDSL---CLLHLLNDLTKQWQWHLAVAHCDHRW-PTDAGIADHVQGL 76 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ + ++ PQT AAAR RY ++ AK N ++MT HT D+ ET+ Sbjct: 77 AQGYKLPYFQRDAQDL-PQT--EAAARHWRYHALTAIAKAENFPVVMTGHTQSDRAETLL 133 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDP 192 R G+ + + + + RP L R++ F Q+ +S ED Sbjct: 134 FNLVRGSGSDGLQAMNWVRNLEESGSDKSPIRLIRPLLEISRQETGDFCQQQQLSVWEDV 193 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N + R R+R + +++K V++ A + + +++ Sbjct: 194 LNEKLTYRRNRIRGELIPYLKKHFNPQVEKSLAQTVELLTAEVAYLEQVSGEIYQTLSQT 253 Query: 253 SQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-- 304 Q LN L ++R C Q P + +E+++ + + R S Sbjct: 254 DQKSLNCRLLSQKPLALQRRIIRQFLQSCQSQS--PNFEEIEQIVGLINAPNRSQTSSLP 311 Query: 305 GRVVIDRRANFLW 317 G+ ++ +FL Sbjct: 312 GQGIVRVEGDFLR 324 >gi|226939785|ref|YP_002794858.1| MesJ [Laribacter hongkongensis HLHK9] gi|226714711|gb|ACO73849.1| MesJ [Laribacter hongkongensis HLHK9] Length = 447 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 125/373 (33%), Gaps = 35/373 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS+ LL AL + I A+ V H L A D + SD+C L + Sbjct: 38 VGLSGGVDSVVLLQALSRCATGHG---IALRAVHVHHGLSPHADDWAGFCSDLCRELSVP 94 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + + + A + + ++ AH DD ETV + + R Sbjct: 95 LRIERVSVVRSGGQSLEAEARR---ARYAAYRNGGSRIVALAHHADDLAETVLLAALRGG 151 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+ L + RP L RR ++ S Q+ SW D SN D R+ R Sbjct: 152 GAHGLAAMPAWRV---HDGLTVWRPLLGWRRNELESMARQQGWSWITDESNADPRYRRNA 208 Query: 204 VRRFVRDID-------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +R V L ++ D +++ + ++ ++L V +A+ + Sbjct: 209 LRHAVLPHLARYWPDYPRQLARTAQRAADEACVLDDCLDAVLAQHLRVPHILPVAV---L 265 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 + LL G +S S+ + + R + V+ L Sbjct: 266 ASRPPAWQRLLLVRWLGRFGIVVSPGWLASV--CPDWFEPSVRRESRLAGYVLLAGQGEL 323 Query: 317 WITRAVRNLPTLILYPEETTV--------WDGRYQFQNLSDSLIQIGPQ---SYRKADVP 365 + ++P + + W GR + + + + R Sbjct: 324 RLLP---DVPEPTMCHDWMLAEGEHAWPGWHGRLRVWRETGRGLVLPDGIIMQVRPGQAA 380 Query: 366 SGIPPIIAQRALS 378 I + ++AL Sbjct: 381 ETIRHAVGRKALK 393 >gi|170694951|ref|ZP_02886100.1| tRNA(Ile)-lysidine synthetase [Burkholderia graminis C4D1M] gi|170140049|gb|EDT08228.1| tRNA(Ile)-lysidine synthetase [Burkholderia graminis C4D1M] Length = 490 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 113/323 (34%), Gaps = 19/323 (5%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+VR +L A + VA SGG DS LL A V G + A V H L Sbjct: 14 LEAVRVAFAALPASARVAVAFSGGVDSSVLLDAAVRVA-----GSSRCIAFHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + V S+ + AAAR+ARY + + Sbjct: 69 ADAWLAHCEAFAREREVEFVVRYVDVSRDAGVSVEAAARDARYRALDALCAAHRIGWLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + RP L R I + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEFSPAGAAAARVRPLLHLLRAQIERYASAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKY 241 + W +D SN D R+ R +R V AL + F+D + + A L+ + Sbjct: 188 ELRWIDDESNADTRYARNALRHQVTP----ALAVHFPGFRDALARTASHAASAQRLLDEL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + + ++ L+ D+ + L + + + + L+ Sbjct: 244 ARIDLDAVSRDDGSALSHDALIALDDDRALNLMRYWMRSQGFIAASSARLGDALRQLREV 303 Query: 298 KRGCVSIGRVVIDRRANFLWITR 320 G R+ +D + L R Sbjct: 304 GEGG-DGHRLRVDHAGHALRSYR 325 >gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5] Length = 447 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 101/257 (39%), Gaps = 31/257 (12%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ +E+ R ++ + IL+ VSGG DSM +L + + Sbjct: 1 MALLEAFRKYIADNDLATHDDRILLTVSGGVDSMVMLSLFTR-------SGYRVGVAHCN 53 Query: 60 HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHA 114 LR + ++ V + + + ++ + + AAR RYA + Sbjct: 54 FQLRGAESDEDEVLVEEEARKYGVEFYNKRFETAAEMERTGESMEMAARRLRYAWFDALS 113 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173 + T++ AH DD +ET ++ R +G+ G+S + RP + Sbjct: 114 REHGYTVVAIAHHADDSIETFFINLLRGTGLRGLTGISTQVGK--------VVRPLMFAS 165 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDL 226 R++I + + I + ED SN ++ R ++R R + + + + D Sbjct: 166 RKEILEYAVANRIPFREDSSNRSTKYLRNKIRLGLIPRIREINPKFTSLMRRNIARLTDA 225 Query: 227 RVKVNNAVAMLIPKYLT 243 ++ +N+ + + + +T Sbjct: 226 QLFINHGIERIRGEAVT 242 >gi|256397528|ref|YP_003119092.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928] gi|256363754|gb|ACU77251.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928] Length = 358 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 21/280 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L A V S ++F ++VDH L+E + Sbjct: 13 AVRKTLSGLAPGGLVLVACSGGADSIALACATAFVAPRLS---LRFGGLTVDHNLQEGSA 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V + L + G AAAR ARY + A+ + A ++ HT Sbjct: 70 AQAERVVRFLASLGFDPVESLSVRVEGHGGPEAAARVARYGALDAAAERLGAATVLLGHT 129 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + + +RPFL R + Sbjct: 130 RDDQAETVLLGLARGSGARSLAGMPAQA-------GRYARPFLDLPRATTVAASAAEGFE 182 Query: 188 WCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 +DP N D + R RVR + AL K ++ ++ A Sbjct: 183 PWDDPHNADPAYTRSRVRHAAIPALSAALGPGIPEALARTAKMLREDTEALDAWAAREFD 242 Query: 240 KYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICG 276 + L ++ D+ + + + +LR++A G Sbjct: 243 RLLEPFGDCDLSHYLDVSELSVLPTAVRRRVLRLAALRAG 282 >gi|168005786|ref|XP_001755591.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693298|gb|EDQ79651.1| predicted protein [Physcomitrella patens subsp. patens] Length = 521 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 111/316 (35%), Gaps = 47/316 (14%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L P ILVAVSGG DS+ LL L S+ + + DH +++ + + Sbjct: 172 HNLFRPGEKILVAVSGGQDSICLLHMLASLRDQWGWL---LGVVYCDHRWSSSSRKQGSH 228 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +S V + LRI + + P GL AR RY ++ A T I+TAHT D++ Sbjct: 229 ISQVAASLRINYYQAVTTSPVPSEGL---ARTWRYGILQRIALRHGFTSIVTAHTASDRV 285 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---------------------------- 164 ET+ R G+ + L+L Sbjct: 286 ETLLYNLFRGSGLHGLQSLTWRRVLSPLLSLSQRTAFAPTEIVSSLAAPNGEMVEVGSSE 345 Query: 165 --ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + RP L R ++R + + DPSN +R R+R + + K Sbjct: 346 VALVRPLLGFTRTEVREYCDLLGLPLWPDPSNMSLEIDRNRIRHQLLPYLRENFNDSVDK 405 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--------STLLFYLLRVSAAI 274 ++ +A + ++ D +D L +L+ Sbjct: 406 SLARCAEILHAEQQYLDSICNNILKKAETEDADGRKLDIMIMQSLPVALQRRVLKQFVEN 465 Query: 275 CGGQISLPGYRSMERV 290 G+ G+ +ER+ Sbjct: 466 FTGRS--LGFDHVERL 479 >gi|317120982|ref|YP_004100985.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM 12885] gi|315590962|gb|ADU50258.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM 12885] Length = 668 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 96/243 (39%), Gaps = 10/243 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+ R L +LVAVSGG DS LL LH + VDH LR Sbjct: 11 VEAFARQHRLLRPGHRVLVAVSGGRDSTVLLDLLHRLQERLGLAA--LGVAHVDHGLRPG 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + D+ R+V++ + + + + + L AAR ARY + E A A + A Sbjct: 69 SADDARWVAEQAAARGLPFLLRRVCVERGRRSLEDAARAARYRALREMAGEFGAHRVALA 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DQ ETV MR +G+ RP L + ++ R Sbjct: 129 HHAGDQAETVLMRLVAGAGVRGLAGM-------RPRRGPFVRPLLAVTPARLAAYAAARG 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTV 244 ++W +DP+N D R R RVR + + L+ ++ + + +L + + Sbjct: 182 LTWRDDPTNRDLRILRNRVRHRLLPLLEAEFNLRTVETLARVATLLAAEADLLDRRTRRL 241 Query: 245 HMR 247 R Sbjct: 242 EAR 244 >gi|260905550|ref|ZP_05913872.1| tRNA(Ile)-lysidine synthetase [Brevibacterium linens BL2] Length = 292 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 107/301 (35%), Gaps = 19/301 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL A + G+++ A++VDH L+ T+ + R V + + V S Sbjct: 1 MALLHACAFL---HRRGELRARAVTVDHGLQPTSAEVARRVISIAESWGVPAEVSSVNVE 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 GL AAAREARY + A ++TAHT DQ ETV + R + + Sbjct: 58 AGVDGLEAAAREARYDALEAARSADGADWVLTAHTRSDQAETVLLGLMRGSGTRSLAGMA 117 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + RP L R + +NI DP N DD F RVR R + ++ Sbjct: 118 L-------RTGRVVRPLLDVDRASTLASCRAQNIEVWHDPMNVDDSFARVRARSLLESLE 170 Query: 213 L---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 + + + +L + + L ++ +++ L +LR Sbjct: 171 ADLGQPITANLARTAELCRADADCLDELAEPSAAAVRGRTEVPLSEVADLEDALASRVLR 230 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-----GRVVIDRRANFLWITRAVR 323 G + ++ ++ G +G G + L R + Sbjct: 231 EWLISLDVPAQSFGAARISELLALIRDPGSQGRAHTRLSLPGDTEVIITGQVLRFRREAK 290 Query: 324 N 324 Sbjct: 291 A 291 >gi|221195339|ref|ZP_03568395.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae ATCC 49626] gi|221185242|gb|EEE17633.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae ATCC 49626] Length = 499 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 120/330 (36%), Gaps = 36/330 (10%) Query: 23 LVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLR-ETAKDEVRYVS 74 ++ VSGG+DS LL+ V R KI + + ++H LR A+ + ++V Sbjct: 2 VLMVSGGADSTALLVMAATDVLDVQDGRGRAKIAQDRLCVLHINHQLRGADAEKDEQFVR 61 Query: 75 DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL--------I 122 + ++ I S + + A R RY + ++ A + I Sbjct: 62 TLSAKYGITCVTRSLDIASIAAADHLNVEDAGRRVRYEIANQLANELCEQAGVPRASARI 121 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH +D+ ET M R G+ + I RP L ++ ++L+ Sbjct: 122 VTAHNANDRAETFLMNVTRGTGTSGLA-------SIPRRRNRIVRPLLGFTHLELCNYLV 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVA 235 +R ISW ED +N D + R +R + L A+ D V+ A Sbjct: 175 ERGISWREDLTNADTYYLRSYIRHEILPRLEVKNPQVLSAISGACDIVSDEDAYVSGVAA 234 Query: 236 MLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + K + + L D + ++R++ L +E V++ + Sbjct: 235 RCLRKLTVREYDGYVVLDAARLAATDVVIARRVIRLAVKNLADDPRLEARH-VESVLMAV 293 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 +G+ + L + +A R Sbjct: 294 ANGRGAVNLPQDIQARIEFGTLTLAKAYRK 323 >gi|296274393|ref|YP_003657024.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299] gi|296098567|gb|ADG94517.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299] Length = 324 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS L L + I F V++ RE +KDEV Y ++ ++ Sbjct: 12 LLAFSGGIDSSALFFLLLN-------ENIPFDIAIVNYNQREQSKDEVAYAKELANKYNK 64 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + + AR+ RY + K + ++TAH +D+LE M+ + Sbjct: 65 KCF-LKEAVLTNNSNFEKEARDIRYDFFDKIIKEYDYDTLITAHQLNDKLEWFMMQLSKG 123 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + L G+ + D N I RP L +E+++ FL + N + D SN D++++R Sbjct: 124 AGL--VELIGLEEKTQKD-NYVIYRPLLELSKEELQIFLQKNNHKYFIDESNYDEKYKRN 180 Query: 203 RVR-RFVRDIDLH 214 R FV ++ Sbjct: 181 YFRKNFVNELIKE 193 >gi|153005200|ref|YP_001379525.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5] gi|152028773|gb|ABS26541.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5] Length = 436 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 137/361 (37%), Gaps = 15/361 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E++R R L +LVA+S G DS LL +L + + +A+ VDH LR Sbjct: 13 LETIRRR-RLLAAGDRVLVALSAGPDSTALLASLAELRDAGCLPGMALAALYVDHGLRPG 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 DE VC RL + V + + A AR ARYA + A AT I T Sbjct: 72 GADEAGSAKSVCERLGVTFESVRVRIGP--GNVQAEARRARYAALRTAALRAGATRIATG 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DQ ETV +R R +G+ + I RP + R + +L +R Sbjct: 130 HTRTDQAETVLLRLLRGAGARGLA-------GIPPRRGAIVRPLIDRSRAEGLVYLAERG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + W DP+N RF R R+R V + AL ++ + + + Sbjct: 183 VPWRTDPTNATPRFARNRLRLEVWP-AITALAPAAERAIARAADLAREDERALARIARPL 241 Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + + + L + ++R A G+ ++ ++ ++ + G ++ Sbjct: 242 AGEAASAALEPLRALPVAARRRVVRRLWARASGRRDGLELHHVDAILALVRRDRPGTATL 301 Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 ++ R + A+ + L P E GRY + ++I Sbjct: 302 PEGLVARCRYG-RLQIALPGERSTPLPPMEVAA-PGRYTLPGRGGA-VEIAAAHVGAVPW 358 Query: 365 P 365 P Sbjct: 359 P 359 >gi|121605781|ref|YP_983110.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2] gi|254789039|sp|A1VRB1|TILS_POLNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|120594750|gb|ABM38189.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2] Length = 328 Score = 167 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 22/282 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA SGG+DS LL+A + A + H L+ A D VR VC++ Sbjct: 29 PLGVAYSGGADSTALLLAAAERWPG------QVQAFHIHHGLQAAADDFVRVCESVCAKA 82 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +V AAR ARYA ++ A ++ DDQ+ET+ + Sbjct: 83 GLPLHIVQVDARHASGESPEDAARRARYAALATAATARGMQGVLLGQHADDQVETMLLAL 142 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ + RP L +R +L+++ I + +DP+NTD+R+ Sbjct: 143 SRGAGLPGLSAMPAS---FGRGGMVFYRPLLHIPSAVLREWLVEQPIEFVDDPTNTDERY 199 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-----SQ 254 R R+R + L AL +F + A + V + + + + Sbjct: 200 TRNRIRARL----LPALAQAFPQFHATFARSARHAAQAQAVLVEVAAQDLAVVGNPPAIK 255 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + +LR + Q + P +E+++ + + Sbjct: 256 ALQALSPPRQANVLRHWLLL---QYATPSAAQLEQLLHQVAA 294 >gi|254457083|ref|ZP_05070511.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1] gi|207085875|gb|EDZ63159.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1] Length = 333 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 16/267 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L+ L+A SGG+DS L L IKF V++ R + EV Y Sbjct: 8 ELLKNKKNLLAFSGGADSTALFFLLLK-------QNIKFDIAIVNYNERVQSIKEVEYAK 60 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ S+ + + + K + ARE RY + ++TAH D+ E Sbjct: 61 ELASKYNLECHTLV--SPKISKNFESKAREIRYDFFEKLISEYGYDNLLTAHHLGDRFEW 118 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M+ + + + + RP L ++++ +L + NI + ED +N Sbjct: 119 MLMQFCKGAGCAEIAGMQKVQQREF---YTLVRPLLHLDKQELYEYLGRDNIKYFEDETN 175 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-S 253 ++ +R R L +KK D +++ LIP+ H+ + S Sbjct: 176 LNETIKRNSFRHNYSAPLLDKYLSGIKKSFDY---LDDDRETLIPEVEIRHIDDLSYFKS 232 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQIS 280 D ++ +L+ + Sbjct: 233 MQKQRADIFIIDKILKSKLYMLSANER 259 >gi|83859796|ref|ZP_00953316.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii HTCC2633] gi|83852155|gb|EAP90009.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii HTCC2633] Length = 427 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 158/385 (41%), Gaps = 30/385 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS LL AL + F + A+ VDH LR + +E +D L Sbjct: 5 LALGYSGGGDSTALLHALKAC-----FPDVALHALIVDHSLRPESAEEAADNADYARDLG 59 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++ W + + AR A L++ + + +L+ HT DD++ET+ MR+ R Sbjct: 60 AEPHILRWSSPRKNQAAARQARHA---LLAGACEGLGVSLLCLGHTLDDRIETLRMRANR 116 Query: 142 DYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + GM NL ++RP L RR+++R++L + W +DPSN D + Sbjct: 117 KGGWRTLTGMTALDASPIWPEGRNLTVARPLLEMRRDELRTYLRRIKARWVDDPSNDDAQ 176 Query: 199 FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 FER+R+R+ A L + D + A L + + + + +D Sbjct: 177 FERIRLRQEAYPPGGPAEQSLLSLSDQSLDAERLLRGAAWRLTERAVEITPWGGAVLDRD 236 Query: 256 ILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID---R 311 + + L G+ LP +E + L+ G+ + + + Sbjct: 237 KFALAARPMALRALEAVMMAVSGEARLPTPEGVEACLDALEQGEAHTQAGVLLTAEGLMG 296 Query: 312 RANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQ-----IGPQSYRKADV 364 R + RA L L +T ++DGR++ Q I+ P + +D+ Sbjct: 297 RDPGAVLGRADGGAEALRLELEAGDTALFDGRFEIQAPEACRIEALGDRAAPDGTQLSDI 356 Query: 365 PSGIPPIIAQRALSSMPSKEGGKPL 389 P + +R+L+ + S++G L Sbjct: 357 PPSL-----RRSLTVLVSQQGDDIL 376 >gi|332638692|ref|ZP_08417555.1| tRNA(Ile)-lysidine synthase [Weissella cibaria KACC 11862] Length = 325 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-V 76 H+LVAVSGG DS+ LL L + + + SA V+H LR+ A E V Sbjct: 22 QHDHVLVAVSGGQDSLHLLRWLTE-GTLPADVQPTVSAGYVNHQLRDDAAAEEALVRRTF 80 Query: 77 CSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +A+ ++W+ P + ARE RY + + A+ + A +I+TAH DQ+E Sbjct: 81 AATPHLAYGLIETLTWEAV-PTVAVEEQAREKRYEALIKMAREVGANIIVTAHHQGDQVE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + R + L GM ++ ++RP L + D+ ++Q W ED + Sbjct: 140 TILYKLTRGS--RLTQLVGMAPRQQLRGDIDLARPLLNLTKADLADLVIQPLTEWVEDYT 197 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 N D+ F R R+R+ V L AL ++ + V +A L Sbjct: 198 NADETFARNRMRQTV----LPALTSINEQAAEHVVTFATQLAALQK 239 >gi|195867457|ref|ZP_03079461.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209554128|ref|YP_002284496.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|195660933|gb|EDX54186.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|209541629|gb|ACI59858.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 326 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 18/206 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L R+ V++ RE+A + V D Sbjct: 12 ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + A AR RY E K N + AH FDD Sbjct: 63 CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L R++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217 +N D +ER RVR+ + + L+ +Y Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204 >gi|185178872|ref|ZP_02964645.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024358|ref|ZP_02997027.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518716|ref|ZP_03004137.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524149|ref|ZP_03004218.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|225550464|ref|ZP_03771413.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551442|ref|ZP_03772388.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209509|gb|EDU06552.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018624|gb|EDU56664.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997679|gb|EDU66776.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659937|gb|EDX53317.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|225379257|gb|EEH01622.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379618|gb|EEH01980.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 326 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 18/206 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L R+ V++ RE+A + V D Sbjct: 12 ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + A AR RY E K N + AH FDD Sbjct: 63 CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L R++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217 +N D +ER RVR+ + + L+ +Y Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204 >gi|255020986|ref|ZP_05293041.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756] gi|254969591|gb|EET27098.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756] Length = 465 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 28/333 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +++A SGG DS L ALH++ D F A VDH + + ++ Sbjct: 19 LAPTRPVILAFSGGRDSTALFWALHAIGQD-------FVAAHVDHGWHPRSAEWAARCAE 71 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 V + + + G AR RYA + ++TA DDQ ET Sbjct: 72 VAASAGVPFVLRQLGKDLCGEGPEDVARRGRYAALQSLL--GPGQFLLTAQHRDDQAETF 129 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +++ R G+ + + ++RP L C + ++ +L +R + W EDP+N Sbjct: 130 LLQALRGAGAAGLAAMPWRRPL---GSGVLARPLLDCSGQTLQGYLHRRGLQWIEDPANR 186 Query: 196 DDRFERVRV-RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D RF R RV R+F+ + + + + + + + A + Sbjct: 187 DPRFARSRVRRQFIPALVRCGWSDPATPIARSAANLADTLQVEADWFRRMWRDYCRACPE 246 Query: 255 D---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF-LKSGKRGCVSI 304 L L + ++S P + ++ ++ + ++ Sbjct: 247 KGAEPRLSLAFLRTLPESLHRVFLRQYLRH-RRLSPPNHEDLQTLLARTAQPAHGQRLAW 305 Query: 305 GRVVIDRRANFLWITRAVRNL----PTLILYPE 333 V + +LW+ A + P +P+ Sbjct: 306 PGVEAWVQGGWLWLWPADLHWGEGGPQGTWWPQ 338 >gi|85707586|ref|ZP_01038652.1| ATPase [Erythrobacter sp. NAP1] gi|85689120|gb|EAQ29123.1| ATPase [Erythrobacter sp. NAP1] Length = 292 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 10/264 (3%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + +S+DH +R A EV +V +C L + + S K + L A AREARYA + Sbjct: 11 DIAVMSIDHGIRPEAAREVAFVETICQSLDVPFT--SAKVTLGAGNLQAKAREARYAALV 68 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A + TAH DDQ ET+ MR R G+ T L ++ + RP L Sbjct: 69 QWAAQQKIGHVATAHHIDDQAETLLMRLARGSGLPGLAGVREW-THLPGSDVPLIRPLLG 127 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRV 228 R+ ++ + + I+ DPSN + F+RVRVR+ + + +D AL + Sbjct: 128 FRKAELEAVVASAGITPVSDPSNENPAFDRVRVRQHLAEHDWLDAEALATSAHHLAEGWR 187 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLP-GYRS 286 + + + ++ A + N+ + + + GG++S + Sbjct: 188 ALEWYAQLDWEEMVSREDTPEGAPQYRYYCNVPRAIQIETVSRIVSALGGRVSRSEAGNA 247 Query: 287 MERVMLFLKSGKRGCVSIGRVVID 310 +R+ +GR I+ Sbjct: 248 ADRLWRG--ENASLGGVLGRCEIE 269 >gi|300870722|ref|YP_003785593.1| putative cell cycle protein MesJ [Brachyspira pilosicoli 95/1000] gi|300688421|gb|ADK31092.1| putative Cell cycle protein, MesJ [Brachyspira pilosicoli 95/1000] Length = 455 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 13/202 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 VA SGG DS LL + + ++ AI V++ LR E + + + + Sbjct: 38 AVAYSGGIDSQVLLNIAYKLKDKLNY---NLIAIHVNYNLRGEESIGDEMFARETAKNYN 94 Query: 82 IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I V K S AR+ RY E ++ AH DD ET+ R Sbjct: 95 IDIYVKHIEKGSYNNKNTQLEARKDRYLFFKELYNKKIYDYLLIAHNKDDLTETIIYRMI 154 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 + L ++ RP L R+DI + + ++S ED SN +++ Sbjct: 155 KGSGTN-------IYKALSKKRKYVLRPILNFYRKDIEEYAKENSLSHREDSSNKTNKYS 207 Query: 201 RVRVRRFVRDIDLHALYLKMKK 222 R ++R + + L + L+ K Sbjct: 208 RNKLRNVIIPM-LEEINLQAKN 228 >gi|317482117|ref|ZP_07941141.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA] gi|291516361|emb|CBK69977.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Bifidobacterium longum subsp. longum F8] gi|316916476|gb|EFV37874.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA] Length = 388 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 16/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ + VDH L+E ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM + +RP L R++ + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 D + R RVR + I+ A + + F + L + V ++ A Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279 Query: 252 ISQ 254 + + Sbjct: 280 VDR 282 >gi|239906277|ref|YP_002953017.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1] gi|239796142|dbj|BAH75131.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1] Length = 330 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 15/309 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A +VA SGG DS+ LL + A +DH LR + E V + Sbjct: 13 PAGATWIVACSGGPDSVALLAMAAILRERLGLAG--LLAAHLDHGLRPESGTEAEAVGAL 70 Query: 77 CSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C +L + + V+ + +TG+ A R+AR A ++ + ++T H +D Sbjct: 71 CRKLGLGCLSDRADVAAMARERRTGVEDAGRQARQAFFADCLAGRDNAWVLTGHQLNDLA 130 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E MR R +G D L + P F + +DP Sbjct: 131 EDQLMRVTRGAGWPALGGMAALDPARRLLRPLLLTPRSAVT-----EFTAALGLPTMDDP 185 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVAMLIPKYLTVHMRSII 250 SN D + R RVR + + L + L + +++ A + + Sbjct: 186 SNADPAYLRNRVRHGLLPLVLQENPRALDAAARLWRQARLDAAYFDEVLPVTVPDEGGTV 245 Query: 251 AISQDILNIDSTLLFYLL--RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 +S+ +L+ L L R A+ GQ G ++E +G+ G+ V Sbjct: 246 RLSRTLLSGLHPTLRTRLYARALDALGPGQALADGLAALEAAYARRDTGRVFQFPGGKTV 305 Query: 309 IDRRANFLW 317 R ++ Sbjct: 306 RVAREGLVF 314 >gi|239621577|ref|ZP_04664608.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515452|gb|EEQ55319.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 388 Score = 167 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 16/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ A+ VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM + +RP L R++ + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 D + R RVR + I+ A + + F + L + V ++ A Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279 Query: 252 ISQ 254 + + Sbjct: 280 VDR 282 >gi|213691452|ref|YP_002322038.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296454758|ref|YP_003661901.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum JDM301] gi|254789034|sp|B7GP48|TILS_BIFLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|213522913|gb|ACJ51660.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296184189|gb|ADH01071.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum JDM301] gi|320457524|dbj|BAJ68145.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 388 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ A+ VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM + +RP L R + + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + R RVR + + + ++ + + Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVARHFAESARLARMDKEYLDQR 268 >gi|23336235|ref|ZP_00121460.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Bifidobacterium longum DJO10A] gi|189440708|ref|YP_001955789.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A] gi|226695535|sp|B3DR08|TILS_BIFLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|189429143|gb|ACD99291.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A] Length = 388 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ + VDH L+E ++ ++ C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAANRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM + +RP L R + + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + R RVR + + + ++ + + Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQR 268 >gi|161524379|ref|YP_001579391.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616] gi|189350866|ref|YP_001946494.1| cell cycle protein [Burkholderia multivorans ATCC 17616] gi|160341808|gb|ABX14894.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616] gi|189334888|dbj|BAG43958.1| cell cycle protein [Burkholderia multivorans ATCC 17616] Length = 468 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 82/401 (20%), Positives = 143/401 (35%), Gaps = 31/401 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + +RL +A + + G+ A+ARE RYA + A + Sbjct: 69 ADAWAAHAREQAARLGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP LR R + + + Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAEH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 +SW +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 ALSWIDDESNADTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + + L+ D+ + F LLR G S M R + Sbjct: 244 AELDFAAAARDDGRALSRDALIAFDDVRGANLLRYWMRRLGLPGASAARLADMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ R+ T + + + WDG+ ++ Sbjct: 304 HDAHALRVDHAGQCLRLYRDTVYWEAGDSAEPRDDGTGTPHADASLAWDGQEIWRLPGWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 + + + +P + + A ++ GG+ + Sbjct: 364 GTFVFARADAGS----DDALPETLLRSAPLIARARAGGERM 400 >gi|283781738|ref|YP_003372493.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068] gi|283440191|gb|ADB18633.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068] Length = 306 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 17/276 (6%) Query: 33 MGLLIALHSVLSDRSFG----KIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVV 87 M LL + + + G + + + +H LR A D + +V ++ ++ Sbjct: 1 MALLRGMAELAARCEPGTSRAEPRIVVLHFNHQLRGEAADADEAFVVELARGMQRECCTG 60 Query: 88 S--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 G+ AAAREARY ++ A+ ++T HT +DQLETV R R Sbjct: 61 RPLQPIVATGGGMEAAAREARYHFFTQAAEARGCRYVITGHTENDQLETVLFRMLRGTGI 120 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 G++GM + + RP L R ++ +L + +C+D +N +D F R R+R Sbjct: 121 --AGIAGMPRARTLSPAVTLLRPMLSITRSEVLEYLASLDQPYCDDATNDEDTFTRNRIR 178 Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDST 262 V + H + + L + A ++ + + S++ ++ + + T Sbjct: 179 NLVLPMLEHEMPGCSEALLRLSSQAAQAQ-QIVDRLVLAQFDSLVESRENRVLVSRPNET 237 Query: 263 LLFYLLRVSAAICGGQISLPG----YRSMERVMLFL 294 + YL+ Q + P + +E+++ L Sbjct: 238 IEPYLVAEILVHVWKQQNWPRKDLTQKHLEQLVGLL 273 >gi|323526545|ref|YP_004228698.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1001] gi|323383547|gb|ADX55638.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1001] Length = 493 Score = 166 bits (421), Expect = 6e-39, Method: Composition-based stats. Identities = 87/422 (20%), Positives = 146/422 (34%), Gaps = 49/422 (11%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+V +R+L A I +A+SGG DS LL A + R G + A+ V H L Sbjct: 14 LEAVGAALRALSADARIGIALSGGVDSSVLLDA-----AARVAGASRCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + S+ + AAAR+ARY + + Sbjct: 69 ADAWLVHCEAFARERGVEFAARRVDVSRDAGVSVEAAARDARYRALDALCTERGIHSLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + RP L R I + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PELSPEGAAAKRVRPLLHVLRAQIEHYASAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 ++ W +D SN D R+ R +R V AL + F+D + A + Sbjct: 188 HLRWIDDESNADTRYARNALRHEVTP----ALTVHFPGFRDALARTAAHAAAAQRLLDAL 243 Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + A+S+D ++ +D LLR + + + L+ Sbjct: 244 ARIDLEAVSRDGGRALAHDALIALDDDRALNLLRYW--MRQQGFIAASSARLGDALRQLR 301 Query: 296 S------GKRGCVSIGRVVIDRRANFL---------------WITRAVRNLPTLILYPEE 334 G R + + + + R + L Sbjct: 302 EVGADGDGHRLRIDHAGHALRSYRGLVHWEAGDSRDPADESAFTEREIGELAWQGQAIWR 361 Query: 335 TTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS-----GIPPIIAQRALSSMPSKEGGKPL 389 W G + FQ D+ I + +A+ P+ IP + +RA+ S S+ GG+ + Sbjct: 362 LPQWRGTFIFQ-PVDASITDRANTADRANTPNPAADDAIPASLLRRAVLSARSRRGGERM 420 Query: 390 LA 391 Sbjct: 421 RT 422 >gi|221198379|ref|ZP_03571425.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M] gi|221208944|ref|ZP_03581941.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2] gi|221171227|gb|EEE03677.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2] gi|221182311|gb|EEE14712.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M] Length = 468 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 142/399 (35%), Gaps = 27/399 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + +RL +A + + G+ A+ARE RYA + A + Sbjct: 69 ADAWAAHAREQAARLGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP LR R + + + Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAEH 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 +SW +D SN D R+ R +R V L AL + F+D + A L+ Sbjct: 188 ALSWIDDESNADTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + + L+ D+ + F LLR G S M R + Sbjct: 244 AELDFVAAARDDGRALSRDALIAFDDVRGANLLRYWMRRLGLPGASAARLADMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGRYQFQNLSDS 350 V + + ++ P T + + + WDG+ + +L Sbjct: 304 HDAHALRVDHAGQCLRLYRDTVYWEAGDSAAPRDDGTGTPHADASLAWDGQ-EIWHLPGW 362 Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 + A +P + + A ++ GG+ + Sbjct: 363 RGTF-VFARADAGSDDALPETLLRSAPLIARARAGGERM 400 >gi|223983243|ref|ZP_03633437.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM 12042] gi|223964848|gb|EEF69166.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM 12042] Length = 407 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 102/282 (36%), Gaps = 16/282 (5%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + + +V VSGG DSM LL ++ V++ R TA + + V Sbjct: 4 NQLAEKKWIVGVSGGPDSMALLDLCRR-------HRVSVVCAHVNYHHRPTADRDQQIVE 56 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C I + + A AREARYA + A A ++ A DD LET Sbjct: 57 AYCRNYAIPFYSLD-PVKETSGNFQAWAREARYAFFARLAVQEAAAGVLIAQHLDDFLET 115 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ + + +G+ + + L + ++ + + I++ D SN Sbjct: 116 ALLQQESGRQCEVLGIREEGRVLGVVVVRP----LLSWTKRQLQEYCNRHKIAYGIDESN 171 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 D + R ++R ++ + K + + L+ + ++ ++ I + Sbjct: 172 LSDDYRRNQLRHH--ELAELSEAEKRSEVRKLKARNHDRQKKKEAVEAKLNPADPIISQE 229 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 L + LR A + + P + ++ LK Sbjct: 230 IFLTLSEAEQRIFLR--AWMQEQGVVPPSEAFLIELIKALKQ 269 >gi|157165572|ref|YP_001467030.1| ATP/GTP hydrolase [Campylobacter concisus 13826] gi|112800063|gb|EAT97407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter concisus 13826] Length = 330 Score = 166 bits (420), Expect = 7e-39, Method: Composition-based stats. Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 12/200 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L +KF + VDH +RE +K EV ++ S+ Sbjct: 16 LLAFSHGIDSTALFYILKE-------TGVKFDLVIVDHNVREQSKFEVESAKELASKFGK 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V S + + AREARY SE + ++ AH FDD+ E M+ + Sbjct: 69 KIYVKSVNLA--GSNFEKNAREARYEFFSEICQKFGYENLILAHQFDDKFEWFLMQLGKG 126 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 K L GM + + + W+ RP L R+++++++L +R + + D +N + + +R Sbjct: 127 AGLKE--LFGMSE-LEKREHFWLVRPLLNLRKKELQNYLDERGLRYFVDETNLEGKLKRS 183 Query: 203 RVRRFVRDIDLHALYLKMKK 222 VR + L + +KK Sbjct: 184 FVRLNFSEPFLDEYFSGVKK 203 >gi|254444811|ref|ZP_05058287.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium DG1235] gi|198259119|gb|EDY83427.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium DG1235] Length = 478 Score = 166 bits (420), Expect = 8e-39, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 117/312 (37%), Gaps = 13/312 (4%) Query: 22 ILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79 + VA SGG+DS+ L++ + + G + +H LR A D + + ++C Sbjct: 33 LYVACSGGADSVFALMLVFLYLKNSDRLG--SLRVLHFNHGLRGDASDGDAEFAKELCDG 90 Query: 80 LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLETVY 136 L I A REAR + AT ++T H DD ET+ Sbjct: 91 LSIPFLDAKADWAVALDKVTEAIGREARLGFFRKATGASAATPAWVVTGHHADDVAETML 150 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R +G L+ + + RP L R++I+S L ISW ED +N Sbjct: 151 MRLSRGSGLEG--LTAPREVSKAGGGIHFLRPLLGFTRKEIQSTLEGCGISWREDATNDS 208 Query: 197 DRFERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 DR R R+R+ V DL A R + L V + Sbjct: 209 DRNYRARLRKSVIPSWDLAADRPARLGVSRSRSLLAEDAEALDAWTDRVWESAWDQDLGA 268 Query: 256 ILNID-STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRA 313 + + +T+ L R G + L G +++E + L G R + I V ++ Sbjct: 269 LATTEVATVPVALQRRVLHRLVGGVEL-GAKAIEACLEALAGGTRLKIEISAGVFLEFSE 327 Query: 314 NFLWITRAVRNL 325 + + R + Sbjct: 328 STIQCVRESSGM 339 >gi|332299446|ref|YP_004441367.1| tRNA(Ile)-lysidine synthase [Porphyromonas asaccharolytica DSM 20707] gi|332176509|gb|AEE12199.1| tRNA(Ile)-lysidine synthase [Porphyromonas asaccharolytica DSM 20707] Length = 479 Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 107/303 (35%), Gaps = 23/303 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +++A+SGG+DS +L + A + LR E + + +V+++C +L Sbjct: 19 VIIALSGGADSTA-------LLWGLLLLGYRCVAAHCNFHLRGEESDRDEIFVTELCDQL 71 Query: 81 RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + S+ + + AAR+ RY + + +A I H +D +E + Sbjct: 72 GVPLERASFDTYGYVAAHKGVSVEMAARKLRYDFFDKLYERYDAQSIALGHHLEDNVEQL 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G G+ G+ + RP + I FL + D +N Sbjct: 132 LINLS-----QGAGVRGLRGMLPIREEGKYIRPLIDTPPRLIYDFLQIAEQPFVTDSTNA 186 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R VR +R + L + + + + L Y+ + + + + Sbjct: 187 DTSIRRNFVRHTLRPL-FDELNPSFDQAVASTIHILRDLEQLQDHYIRSTLPADASQPLE 245 Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + L L L AAI ++ L + + + +I+R Sbjct: 246 VAWLRQQIAPLALLYSYFAAIDCDRLVL--QQLLMDCTKSERDNSYARYEGRGGIIERYR 303 Query: 314 NFL 316 +L Sbjct: 304 GYL 306 >gi|291457314|ref|ZP_06596704.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213] gi|291381149|gb|EFE88667.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213] Length = 383 Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 16/244 (6%) Query: 7 ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E R A +LVA SGG DSM L V + ++ A+ VDH L+ Sbjct: 29 EFARHGEHQAAPDAPLVLVACSGGRDSMALAAVCRIVCASLG---LRCGAVIVDHGLQSG 85 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 + ++ C +A V + Q G+ AAAREARY + A+ +NA +++ Sbjct: 86 SDRVATLTAERCRDCGLAPVAVRTASVHVQGEGVEAAAREARYGELCGAARELNAAVVLL 145 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV + R L+GM + D + RP + R + Sbjct: 146 AHTLDDQAETVLIGLLRSGGVD--ALAGMPQVMHRD-GIMFLRPLIGVSRAETTGICEDL 202 Query: 185 NISWCEDPSNTDD-------RF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 NI + +DP+N DD + R R+R + + + ++ Sbjct: 203 NIHYWDDPTNGDDVDGELPRDYPLRSRIRHDLLPAIKRFAGADVTQHIANGARLARLDKE 262 Query: 237 LIPK 240 + + Sbjct: 263 YLDQ 266 >gi|149194101|ref|ZP_01871199.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2] gi|149136054|gb|EDM24532.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2] Length = 323 Score = 165 bits (419), Expect = 9e-39, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 28/297 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A SGG DS L L I F V++ RET+ +EV Y + + Sbjct: 4 LLAFSGGIDSSALFFWLME-------KNIDFDIAIVNYHTRETSDEEVEYAKYLAKKYNK 56 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K AR+ RY E K + ++ H +D+ E M+ + Sbjct: 57 KIFIKDCYLKKFS---EKKARDCRYTFFEEIIKKYGYSTLILGHQLNDRFEWFLMQLSKG 113 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 K + + + I RPF R +I +L + NI + D SN D +++R Sbjct: 114 AGLKELIAMEKWEEREF---YKIYRPFYNLSRREIIEYLHKHNIKYFIDKSNFDIKYKRN 170 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R+ + KF ++ K + + + + +D+ T Sbjct: 171 LIRKEFSN-----------KFIEMFEKGVKKSFEFLEEDKKLLINLNWKKIKDLYIFKKT 219 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 ++ I LP + + + LK+ CV G++ ID ++++ Sbjct: 220 NPKLDIKKVDLILKRLGVLPTKKQKDEI---LKTNFS-CVIQGKIAIDSNNEKIYVS 272 >gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis CGDNIH1] gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis CGDNIH1] Length = 433 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 73/377 (19%), Positives = 133/377 (35%), Gaps = 23/377 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGGSDS+ L + R A+ VDH LR + E + + Sbjct: 40 RVAVAVSGGSDSLALALLAARWQRSRGG---SVLALVVDHGLRPESAFEAQLTLERLKTQ 96 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +I ++ + + + + AR ARY + + ++ H DQ ET+++R Q Sbjct: 97 KIEARLLRLTTLQRGSAIASRARAARYDALIGACRNEGIIDLLLGHHRQDQAETIWIRQQ 156 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 A G+ + ++ + RP L + +R+ + + W EDPSN Sbjct: 157 AGSAVMGLAGMALLRE---AADIRLLRPLLAFNKASLRNVVRDYGLDWVEDPSNHSPAAG 213 Query: 201 RVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R + R V L R +A + ++ +S + L+ Sbjct: 214 RTQAREVVERDGPQQDQLLEMAHHAAMTRRVQEQTIAQELAATVSFLPEGYALVSGNTLS 273 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 S L A G+ P + + F + + RV+ R W+ Sbjct: 274 CPS------LAAVLAAVSGRNYRPRHARLTP---FQHGLRPMTLEGIRVLPAGRLPGDWL 324 Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL----IQIGPQSYRKADVPSGIPPIIAQ 374 + ++ +WD R++ + S + +G S + Sbjct: 325 IVREHAAQQAPIVAKDRGLWDQRFRIHDPSGDAEAKGLSLGALGKDAKLFRS--RDGLPS 382 Query: 375 RALSSMPSKEGGKPLLA 391 L ++PS G+ L+A Sbjct: 383 AILQTLPSWRHGEKLIA 399 >gi|315635636|ref|ZP_07890899.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Arcobacter butzleri JV22] gi|315479933|gb|EFU70603.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Arcobacter butzleri JV22] Length = 326 Score = 165 bits (419), Expect = 1e-38, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 30/314 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + + L+A S G DS L L I F V++ +R +KDEV Y Sbjct: 6 SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + K + AR+ RY E + ++TAH +D+LE Sbjct: 59 KLALKYNKQIYIKDIKLES-TSNFEKTARDIRYKFFEEIIDENSYETLITAHQLNDKLEW 117 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M+ KG GL + ++ N + +P L+ +E++ FL Q NI + D Sbjct: 118 FLMQL-----TKGAGLVELIGFNEFEQKENYKVYKPLLKITKEELEKFLKQENIKYFIDN 172 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 SN D++++R R D L +KK + N++ + I + V I Sbjct: 173 SNFDEKYKRNYFRHNFSDKLLSEYTNGIKKSFEYLQNDINSLNIEIKP-IKVFDELEIYK 231 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDR 311 +Q+ N++ ++ L+ + L E ++ K+ ++I + I Sbjct: 232 NQNDNNLNIRIIDNSLKK-------RGFLLSSAQREEIL------KQKEITISHKINISI 278 Query: 312 RANFLWITRAVRNL 325 + +F+WI + ++ Sbjct: 279 KKDFIWICPNISSI 292 >gi|84495023|ref|ZP_00994142.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649] gi|84384516|gb|EAQ00396.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649] Length = 320 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 69/273 (25%), Positives = 109/273 (39%), Gaps = 15/273 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + + A +LVA SGG DSM L A V + A+ VDH L+ + Sbjct: 14 AVRSSLADIAPDAVVLVACSGGGDSMALAEA---VAHEARRASWSAGAVVVDHGLQAGSA 70 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D + L + V +GL +AAR+ARYA +S A + A +++ H Sbjct: 71 DVAARAAGRLRDLGLGPVVVERVAVVDNGSGLESAARDARYAALSGVADRLGAAVVVVGH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T +DQ E V + R + L+GM RP L R + R L + Sbjct: 131 TLEDQAEQVLLGLVRGSGAR--SLAGMASVR-----GIYRRPLLGVTRAECRESLKAEGV 183 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 W +DP N D F RVR RR V D++ + + + D + + + L + Sbjct: 184 EWWDDPMNDDAAFTRVRARRAVADLEADLGPGIVAALGRSADQLREDADFLDSLADDAVA 243 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 ++Q + + + + R G Sbjct: 244 ALGPGPWEVTQ-LAALPRAVRSRVWRRLLIAAG 275 >gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] gi|68262940|emb|CAI36428.1| cell cycle protein MesJ [Corynebacterium jeikeium K411] Length = 350 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 120/327 (36%), Gaps = 33/327 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 R+ A + +SGG+DS+ L+ L +K A+ VDH L+E + R Sbjct: 32 AARAAQVRAGVAAGLSGGADSLALVHGLLRC-------GVKVHAVVVDHQLQEGSAQVAR 84 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +D L + + P G AR+ARY + A ++ AHT DD Sbjct: 85 QAADTALSLGATAEIRTVDVEGPGEGP---ARQARYEALGAAAA---GRPLLVAHTADDD 138 Query: 132 LETVYMRSQRDYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 E + + R + GM + W+ RP L C R + + ++W Sbjct: 139 AEGMLIGLVRGSGAEAIAGMRSVHTDHAAVAAGAAWLGRPLLNCTRAETEAECRAAGLNW 198 Query: 189 CEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 EDP N+ D + R R+R V D+ + M + + + + L + L Sbjct: 199 WEDPHNSSDAYLRSRIRTHVLPYLEDVLGEHIGANMARTARMLREDVELLDELAGRELQA 258 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 ++ + L +L+ A G ++ +++ +++ K V Sbjct: 259 AEEGASLNCTELQQQPAALRRRVLKQWLADKAGPLTSAHLNAIDALVIAWKGQGGAAVPW 318 Query: 305 -------------GRVVIDRRANFLWI 318 R+V+ RR +L + Sbjct: 319 PQSPPALNEQRRTHRLVVQRRDGYLQL 345 >gi|255320834|ref|ZP_05362008.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82] gi|255302003|gb|EET81246.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82] Length = 405 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 17/273 (6%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 + AI VDH L+ ++D +V C +L + V + L AREARY Sbjct: 8 RIRAIYVDHQLQAQSRDWGIHVQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQAYH 65 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 +H K+ +++ AH DQ ETV +R G+ D + I RP L Sbjct: 66 QHIKS--GEVLVLAHHQQDQAETVLLRLFSGTGISGLSAMKQLDQR---HEMPIWRPMLS 120 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 RE I + Q NIS+ +DPSN + ++R R + + L + + KM++ + Sbjct: 121 LSREQICQWAEQLNISFIDDPSNNNTHYDRAWCRTMLWPL-LASRFSKMQQAVTRTASLM 179 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++ + L +++ Q L + LL SA + G I P + + Sbjct: 180 QDADEILQEVLQEDLKNCGNAQQLDLARLKLLSKPRQRQLL--SAWMKGEGIYRPAFEMV 237 Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317 ER+ ++ K+ + + + R L+ Sbjct: 238 ERIQHEVIAAKADAQAALHWNKYYYVRYHGQLY 270 >gi|322689831|ref|YP_004209565.1| hypothetical protein BLIF_1650 [Bifidobacterium longum subsp. infantis 157F] gi|320461167|dbj|BAJ71787.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 388 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 16/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ + VDH L+E ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V GL AAAR+ARY + A+ A ++ AHT DDQ ETV + Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM +RP L R++ + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGATFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 D + R RVR + I+ A + + F + L + V ++ A Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279 Query: 252 ISQ 254 + + Sbjct: 280 VDR 282 >gi|78183658|ref|YP_376092.1| MesJ-like protein [Synechococcus sp. CC9902] gi|78167952|gb|ABB25049.1| possible MesJ-like [Synechococcus sp. CC9902] Length = 337 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 13/290 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++VAVSGG DSM LL L ++ + + DH + ++ Sbjct: 29 LPQGKTLVVAVSGGQDSMALLGLLRDLMPVHQW---RLVLWHGDHHWHPHSSQIASELNQ 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + + + PQT A AR RY +++ T A + T HT D+ ET+ Sbjct: 86 WCDGQTLPLQIDTAPEDVPQT--EADARSWRYRCLTQLTHTHRADAV-TGHTASDRAETL 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 M+ R G+G + + RP L RR++ + DP Sbjct: 143 LMQMSRGSDLAGLGSLRAVRPLQAHAPEGPQLRRPLLGFRRKETAQICSDLQLPIWNDPG 202 Query: 194 NTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N F R R+R V + ++ F + ++ + L LT Sbjct: 203 NQSPDFARNRIRHEVMPVLEELNPGCSRRLADFAERMSQLRDTQHNLAALALTTLQNKAG 262 Query: 251 AISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSM-ERVMLFLKSGK 298 + + + LL G + P + R+ +G+ Sbjct: 263 LDRKALGRLPQPTRRQLLAQWLNQQGVPGLDAPTLEQLGHRLRQAAPAGE 312 >gi|198273466|ref|ZP_03206002.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|198249986|gb|EDY74766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] Length = 326 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 18/206 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L R+ V++ RE+A + V D Sbjct: 12 ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + A AR RY E K N + AH FDD Sbjct: 63 CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L ++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFICKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217 +N D +ER RVR+ + + L+ +Y Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204 >gi|302690392|ref|XP_003034875.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8] gi|300108571|gb|EFI99972.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8] Length = 392 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 25/221 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++VA SGG DS LL LH + + + SVDH L+ ++ + + + +RL Sbjct: 17 LVVANSGGPDSTCLLFLLHRWARSLPESQSHRILSWSVDHNLQPSSAQWMSHTARFAARL 76 Query: 81 RIAH--SVVSW--------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I H + ++W S + L AARE RYAL+ + ++ A + H DD Sbjct: 77 NIRHLSAQIAWGDGGFPPKPTSGGKGKLELAAREVRYALLYDALRSAGAEVAAFGHHADD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-----------WISRPFLRCRREDIRS 179 Q+ET +R+ + +E +GL+GM + + WI RP L ++ I + Sbjct: 137 QVETAILRALKGSSE--LGLAGMKSCRRFGMGARGELGHEGLRKWIVRPLLPVSKDRILA 194 Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219 + + + D +N R +R V + D+ ++++ Sbjct: 195 TCDEHKLEYVVDSTNFQPELTLRNAIRNAVEERDVGPVFIQ 235 >gi|162146631|ref|YP_001601090.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl 5] gi|161785206|emb|CAP54752.1| putative tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl 5] Length = 430 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 26/379 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS+ L + VDH LR A E L Sbjct: 39 PVGVAVSGGADSLCLAYLAARWRRAVRA-------LIVDHGLRPAAAAEAALTRRRLHAL 91 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ +P GL AR ARYA ++ + ++ H DQ ET+ +R Sbjct: 92 GIPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR-- 149 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R A GL+GM ++ + +L + RP L R+ +R+ L + ++W EDPSN D R E Sbjct: 150 RRAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAE 208 Query: 201 RVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R RVR + L + R+ + A L+ + +T+ +A++ D Sbjct: 209 RARVRAALDDDPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDPTC 268 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRANFL 316 L G LP R++ + + G C+ + R + Sbjct: 269 P------RALAFLMRAVSGSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 322 Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPSGIPPII 372 + R + P ++ P+ VWDGR+ + + +G A P G Sbjct: 323 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 380 Query: 373 AQRALSSMPSKEGGKPLLA 391 RAL ++P+ ++A Sbjct: 381 PARALRTLPALHRAGRVVA 399 >gi|257783916|ref|YP_003179133.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469] gi|257472423|gb|ACV50542.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469] Length = 489 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 64/271 (23%), Positives = 102/271 (37%), Gaps = 31/271 (11%) Query: 33 MGLLIALHSVLSDRSFG-------KIKFSAISVDHCLRET-AKDEVRYVSDVCSRLRIAH 84 M LL + D G K + + V+H LRE A + +V + C L I Sbjct: 1 MALLHMAATESLDLGDGLGLAHVAKERLHVLHVNHLLREDDADADQHFVQETCDSLDIPC 60 Query: 85 SVVSWKNSK----PQTGLMAAAREARYALISEHAKTINAT--------LIMTAHTFDDQL 132 +V+ +K + R RY E A+ + A I+TAHT DD+ Sbjct: 61 TVLRADVAKLARERDGNVEEIGRRVRYDAARELAQKLCAEQGVSRQKAKILTAHTADDRT 120 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M R G+ T + I RP L E ++ +L RN+ W ED Sbjct: 121 ETFMMNVMRGSGMSGL-------TSIPRHRGLIYRPLLNYTHEQLKDWLKARNLDWHEDA 173 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +NTD + RV +R V + L ++ + + + L K + + Sbjct: 174 TNTDTHYLRVYMRHNVLPLLKARNPLLVQTVCKIADLMTDEDDYLEAKAARKLRQITLRK 233 Query: 253 SQDILNIDSTLLFY----LLRVSAAICGGQI 279 + +L +D+ L + R I Q+ Sbjct: 234 GESLLVLDALKLSSTDVVIARRVVRIVARQL 264 >gi|209543377|ref|YP_002275606.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209531054|gb|ACI50991.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 438 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 26/379 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS+ L + VDH LR A E L Sbjct: 47 PVGVAVSGGADSLCLAYLAARWRRAVRA-------LIVDHGLRPAAAAEAALTRRRLHAL 99 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I ++ +P GL AR ARYA ++ + ++ H DQ ET+ +R Sbjct: 100 GIPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR-- 157 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R A GL+GM ++ + +L + RP L R+ +R+ L + ++W EDPSN D R E Sbjct: 158 RRAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAE 216 Query: 201 RVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 R RVR + L + R+ + A L+ + +T+ +A++ D Sbjct: 217 RARVRAALDDDPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDPTC 276 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRANFL 316 L G LP R++ + + G C+ + R + Sbjct: 277 P------RALAFLMRAVSGSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 330 Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPSGIPPII 372 + R + P ++ P+ VWDGR+ + + +G A P G Sbjct: 331 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 388 Query: 373 AQRALSSMPSKEGGKPLLA 391 RAL ++P+ ++A Sbjct: 389 PARALRTLPALHRAGRVVA 407 >gi|224541459|ref|ZP_03681998.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM 15897] gi|224525617|gb|EEF94722.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM 15897] Length = 382 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 18/244 (7%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-N 91 M LL +H V++ LR +++ + V D C I + + Sbjct: 1 MALLDMMHEY---------SICVAHVNYNLRNDTEEDYKVVHDYCKAHNIPFYYKEFTPD 51 Query: 92 SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 + AR+ RYA E KT + H DD +ET+YM +RD +G+ Sbjct: 52 DYVKGNFQTVARDMRYAFYQEVYKTEQCDALCLGHQKDDVIETIYMHLERDSHPDYLGI- 110 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + L + I RP L ++D+R + +I + +D +N F R R+R + + Sbjct: 111 ---QEVSCRLGMTIIRPLLHVTKQDLRDYCDDHHILFHDDYTNFQTEFTRDRIRNTILNQ 167 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 ++ ++ K + + + KYLT + + + +D+L S +L+ LL+ Sbjct: 168 YTNSQKEELLKKAEEYNQKQVLKKEEVSKYLTEPLDYTL-VPEDLL---SDVLYALLKKH 223 Query: 272 AAIC 275 + Sbjct: 224 IEVS 227 >gi|319779353|ref|YP_004130266.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9] gi|317109377|gb|ADU92123.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9] Length = 366 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 111/292 (38%), Gaps = 22/292 (7%) Query: 2 FLSPIESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 F S I+SV ++ L I +A SGG DS+ L ++ R I+ I V Sbjct: 34 FDSNIDSV---IKDLSSKGIRKIGIAFSGGKDSVVLA-IQSKYIATR--YGIEVHLIHVH 87 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN 118 H L A + V+ R ++ G+ AAAR+ARY I++ K + Sbjct: 88 HGLYAEADEWVQRNLKFAERFGFLIHILYVNVPTDTNKGVEAAARQARYKAITDKCKELG 147 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + T H DDQ ET+ +R R +G+ G+ + RP+L Sbjct: 148 IGHVFTGHHIDDQSETILIRLLRGTGI--LGIKGIPPKSEI-YGIKFHRPWLNSTP--TY 202 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + L +DPSN D ++ R VR + D + + + +K +V V L Sbjct: 203 NILELIGHESIKDPSNFDSKYARGAVRN-MFDASIASHFPLWQKNVARFAQVCVEVDELT 261 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + S+ ++ + L++ SLP R + + Sbjct: 262 RDLAILDAESVGLTFNQKDDMGKEVASLDLQLF-------RSLPTRRQINLI 306 >gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818] Length = 774 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 105/322 (32%), Gaps = 59/322 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +AVSGGSDSM L +++ ++ A VDH R + E + V+ L Sbjct: 41 RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNL 100 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V++ + + + G AR RY ++ + ++ H DD +ET Sbjct: 101 GVQSKVLALQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETAL 160 Query: 137 MRSQRDYAEKGM-------------GLSGMC----------------------------- 154 MR + + + G+ GL G+ Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMDGTILHLCSEIP 220 Query: 155 ---------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 + +++ RPF + + + + I + D +N D F R V Sbjct: 221 SCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTNDDLTFTIRNTV 280 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261 R+ + D L+ L K ++ + + + I Sbjct: 281 RQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSLDTRFGTMVIKM 340 Query: 262 TLLFYLLRVSAAICGGQISLPG 283 ++ L + + ISLP Sbjct: 341 PMMSELPKHQSNAVQAHISLPD 362 >gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] Length = 522 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 129/339 (38%), Gaps = 33/339 (9%) Query: 10 RFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F R L ++ AVSGG DS ++ + + +DH LR + Sbjct: 6 RRFERRLAALCGEGRVVAAVSGGGDS-------VALAVLLAAVGREAVVAHLDHALRPGS 58 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLI 122 + + R+V ++ RL + + + L A ARE RYA ++E A+ A + Sbjct: 59 EADARFVCELAGRLGFPCEQRRVDAAAVARRKRENLEAVARELRYAFLAEVARAYGAACV 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAHT +D ETV ++ R + ++RP L R ++R++L Sbjct: 119 LTAHTLEDNAETVLLQLFRGAG---------RALGIRAKRGRVARPLLEISRTELRAYLR 169 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239 +R W EDPSN +R +R V + ++ + + + A+ L Sbjct: 170 ERGERWLEDPSNELVCLDRNYLRHEVWPRVAARFERAGEALLRYAESQQADDAALDPLAQ 229 Query: 240 KYLTVHMR--SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + R + A+ L+ L R + Q P R +E L ++ Sbjct: 230 ARIVPDRRFEPVFALRAAPLSRAPEALRR--RALRVVLERQGLRPERRYLE---LAERAL 284 Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 VS+G V+ A + +L + P T Sbjct: 285 AGESVSLGPFVLRPSAGGVVWVPTQPDLLAVASPPAGLT 323 >gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115] gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115] Length = 533 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 31/280 (11%) Query: 30 SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89 +DS+ LL AL + +DH LR + ++ ++V D+ +L AH+ Sbjct: 24 ADSVALLRALVQAEARP-------VVAHLDHALRPNSAEDAQWVHDLAEQLGAAHTSTRV 76 Query: 90 K----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 ++ + AAR RY ++S A+ A +MTAHT DQ ETV M R A Sbjct: 77 DVAAVAARRGWNVEDAARRVRYEVLSRAARQHGAHTVMTAHTRRDQAETVLMGLLRGEAV 136 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 T + + + RP+L R +I ++L W EDP+N D + R +R Sbjct: 137 L---------TGIPAVRGRVRRPWLDVPRSEIEAYLKALGQEWREDPTNADVTYTRAWLR 187 Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLL 264 V + + +F + + + + + + + + +L Sbjct: 188 TEV-------MPVLAARFPGVEAALGRVAKLAQQDDEALRDLAAALTPHAPRDRVPLAVL 240 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + G Q + ++++ ++G+ V++ Sbjct: 241 RRRVTQELKSAGLQFHV---GQVDQLAEAQRTGETRHVTL 277 >gi|222823298|ref|YP_002574871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter lari RM2100] gi|222538519|gb|ACM63620.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter lari RM2100] Length = 318 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 18/248 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 SL+ L+A S GSDS L L + I F +++ R+ + E + Sbjct: 5 SLLKNKKNLLAFSHGSDSSALFFMLLN-------KNIDFDLALINYKTRKNSDKEEQSAK 57 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ + V +K + A AR RY E K ++ AH +D+ E Sbjct: 58 ELAKKYNKKIFVK--IATKIEKNFEANARAVRYEFFDEICKKYKYENLILAHNLNDKFEW 115 Query: 135 VYMRSQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 M+ + + +G + N I RP + +++I +FL + NI + D S Sbjct: 116 FLMQFSKGAGFVELLGF----KAVEKKENFIIVRPLINTSKDEILNFLKKENIKYFYDES 171 Query: 194 NTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 N D+++ R +R+ + L + + Q ++ + Y + S+ Sbjct: 172 NDDEKYFRNFIRKNFANEFLKLYPDGVKKSFEYLQKDLTFFDDEIKEFGGIYCVLKNESL 231 Query: 250 IAISQDIL 257 I+ L Sbjct: 232 ISKCFKKL 239 >gi|311743365|ref|ZP_07717172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Aeromicrobium marinum DSM 15272] gi|311313433|gb|EFQ83343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Aeromicrobium marinum DSM 15272] Length = 324 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 71/302 (23%), Positives = 122/302 (40%), Gaps = 15/302 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + + +++ VSGG+DS+ L V ++ SA+ VDH L+ + + Sbjct: 20 LHDVGPGSSVVLGVSGGADSLALAAVTAFVARREAW---DVSAVVVDHDLQPGSSEVAAR 76 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ C L + VV + G AAAR AR+ + A A +I AHT DDQ Sbjct: 77 AAEQCRGLGLRAEVVGVEVGSAG-GPEAAARTARHGALRSAALAAGAEVICLAHTLDDQA 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV + R + LSGM ++ + RP L RR D + W +DP Sbjct: 136 ETVLLGLGRGSGAR--SLSGMAG-----VDGLVRRPLLGLRRRDTEQICAAHGLPWWDDP 188 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 N D RVRVR + + L + ++ + +L + Sbjct: 189 HNRDPAHRRVRVRHEALPVLENVLGGGVAEGLARTARQLADDADLLDRLTDEWVVGHPAP 248 Query: 252 ISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 D+ + S L +L +A G G+++ +++R++ + G R + G Sbjct: 249 TVADLAGLPSALRSRVLLRAARSAGCPPGELAAVHVDALDRLVRLGRGGARVNLPGGVTC 308 Query: 309 ID 310 + Sbjct: 309 VR 310 >gi|226324144|ref|ZP_03799662.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758] gi|225207693|gb|EEG90047.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758] Length = 429 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 64/345 (18%), Positives = 122/345 (35%), Gaps = 31/345 (8%) Query: 59 DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113 +H +R E AK + +V +C + I VS + + A R AR + + Sbjct: 2 NHGIRGEEAKADEEFVKTLCEKKEIPCRSVSVDIPKMAVEYRMSEEEAGRTARREIFEQA 61 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ T I AH DD ET ++ R + +Y +N RP L Sbjct: 62 AEEWGGTRIALAHHQDDNAETFFLHLARGSGLR-------GLGGIYPVNGMYIRPLLCVG 114 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK--------MKKFQD 225 R++I +L R + +C D +N +D + R R+R V + K M + ++ Sbjct: 115 RKEIEDYLKGREMPYCIDATNMEDAYMRNRIRNHVIPYFKENINEKTVEHMNRSMDQLRE 174 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + + + I ++ + + +LR + A+ Sbjct: 175 IWDYMERQTESAYQICTAQNGEKICIHAEAYHRQERLIRKMILRKALALVAEHEKDLEQV 234 Query: 286 SMERV--MLFLKSGKR--------GCVSIGRVVIDRRANFLWITRAVRNLP-TLILYPEE 334 +E++ + + GKR C + + + R+ + +NL + Sbjct: 235 HVEKLEGLFEKQVGKRLDLPYAVCACRTYEGIELKRKKKDTELAEEEKNLDLKQVSGKIS 294 Query: 335 TTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379 W+ Y+ + QI ++Y K I +A R + Sbjct: 295 YGKWEISYRIFEKEECRCQIPKKTYTKWFDYGIIKQSVAVRTRRA 339 >gi|322378539|ref|ZP_08052987.1| PP-loop family protein [Helicobacter suis HS1] gi|322379747|ref|ZP_08054057.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5] gi|321147818|gb|EFX42408.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5] gi|321149053|gb|EFX43505.1| PP-loop family protein [Helicobacter suis HS1] Length = 346 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ L+ SGG DS+ L L + F +DH LR +++E+ Y Sbjct: 9 EILLKGRCLLGFSGGGDSVALFFLLKK-------EGVNFDIAILDHGLRAQSQEEIAYAK 61 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + + V + + L A R+ RY+ + N T ++ AH +D+LE Sbjct: 62 HLAEKY--SKRVHIGQVHLSGSNLEARYRKERYSFFERIIQEFNYTHLILAHHLNDKLEW 119 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +M+ + + + +G S + + YD + RP + ++ +R +L + ED + Sbjct: 120 FFMQLAKGSSLQTLLGFSALEKRVGYD----LIRPLIYTQKRTLREYLHTNKYRYFEDET 175 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMK 221 N RF+R R+ V + L ++ Sbjct: 176 NFSPRFKRNIFRQCVSNPFLEGVFPGFN 203 >gi|313885942|ref|ZP_07819680.1| tRNA(Ile)-lysidine synthetase [Porphyromonas asaccharolytica PR426713P-I] gi|312924472|gb|EFR35243.1| tRNA(Ile)-lysidine synthetase [Porphyromonas asaccharolytica PR426713P-I] Length = 494 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 106/303 (34%), Gaps = 23/303 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80 +++A+SGG+DS +L + A + LR E + + +V+++C +L Sbjct: 34 VIIALSGGADSTA-------LLWGLLLLGYRCVAAHCNFHLRGEESDRDEIFVTELCEQL 86 Query: 81 RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + S+ + + AAR+ RY + +A I H +D +E + Sbjct: 87 GVPLERASFDTYGYVAAHKGVSVEMAARKLRYDFFDTLYERYDAQSIALGHHLEDNVEQL 146 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + +G G+ G+ + RP + I FL + D +N Sbjct: 147 LINLS-----QGAGVRGLRGMLPIREEGKYIRPLIDTPPRFIYDFLRIAEQPFVTDSTNA 201 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R VR +R + L + + + + L Y+ + + + + Sbjct: 202 DTSIRRNFVRHTLRPL-FDELNPSFDQAVASTIHILRDLEQLQDYYIRSTLPADASQPLE 260 Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + L L L AAI ++ L + + + +I+R Sbjct: 261 VAWLRQQIAPLALLYSHFAAIDCDRLVL--QQLLMDCTKSERDNSYARYEGRGGIIERYR 318 Query: 314 NFL 316 +L Sbjct: 319 GYL 321 >gi|326328803|ref|ZP_08195139.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1] gi|325953425|gb|EGD45429.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1] Length = 327 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 129/331 (38%), Gaps = 24/331 (7%) Query: 1 MFLSP-IESVRFFVR----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 M L P I +VR VR L ++VA SGG+ + + K+ Sbjct: 1 MSLHPSIAAVRRPVRATLEQLEPGDKVIVACSGGA-----DSLALASAAVFEGHKLGLHV 55 Query: 56 I--SVDHCLRETAKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISE 112 I +VDH ++E + + V + + I +V + + G AAAR+ARYA++ + Sbjct: 56 IGATVDHGMQEGSDAQASKVIAQLAEMGIDETVTATVEVKADGEGPEAAARQARYAVLDQ 115 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++A++I+ HT DDQ ETV + R + LSGM RP L Sbjct: 116 LAERLDASVILLGHTRDDQAETVLLGLTRGSGAR--SLSGMRAAF-----DRYRRPLLGT 168 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVN 231 R D + + +DP N D + R R+R V L + + ++ Sbjct: 169 TRIDTETACQIEGLDVWQDPHNRDFAYTRARIRHRVLPTLEEDLGPGVTEALARTAEQLR 228 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + ++H + + L + + +LR++A G + ++ V Sbjct: 229 EDADFIDDIAESMHRELGGTLPVETLAQYPAAVRTRVLRIAALAAGSPPAELTRDHVKAV 288 Query: 291 MLFLKS--GKRGCVSIGRVVIDRRANFLWIT 319 + G+R G + R + + Sbjct: 289 DELITGWRGQRWIDLPGHIRARRTNSSIVFE 319 >gi|124112132|ref|YP_001019116.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus] gi|124012239|gb|ABM87973.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus] Length = 345 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 65/302 (21%), Positives = 111/302 (36%), Gaps = 21/302 (6%) Query: 1 MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 +F +++R R L P IL+A SGG DS+ L+ L+ + S ++ + D Sbjct: 25 LFYRINQAIRD--RRLFKPNQRILIAASGGQDSICLIKILNQLKSQWNW---QLGIAHCD 79 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H + + +VS + L I + AR RY ++ + A + + Sbjct: 80 HLWQIDSFYAASHVSQLAENLNIDYYQCITTKV---FNNEEKARLWRYKILEQIASSHDY 136 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I+TAHT D+ ET R G L + + I RP L R ++ Sbjct: 137 TAIVTAHTASDRTETFLYNLLRGTGPDG--LQSLSWKRKLKSGIRIIRPLLSTTRFELTV 194 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVN---N 232 Q + D SN D F+R +R+ +R + + + +L Sbjct: 195 LAKQLQMPLWPDKSNQDLFFKRNLIRKQLLPYLRSFFNPQIDKTIAQLAELLHAETVYME 254 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 +A LI +I + IL + L +LR + +ER+ Sbjct: 255 NIAALIRIKAHKKDDTIAELDTSILKTLPLALQRRVLRQFLYHEM--RYRFTFTEIERIR 312 Query: 292 LF 293 + Sbjct: 313 IL 314 >gi|116071731|ref|ZP_01468999.1| possible MesJ-like protein [Synechococcus sp. BL107] gi|116065354|gb|EAU71112.1| possible MesJ-like protein [Synechococcus sp. BL107] Length = 337 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 99/292 (33%), Gaps = 17/292 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++VAVSGG DSM LL L + + DH + + Sbjct: 29 LPQGKTLVVAVSGGQDSMALLGLLRDLTA---VHHWTLVLWHGDHHWHPHSSQIASALKQ 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C +A V + PQT A AR RY +++ A + T HT D+ ET+ Sbjct: 86 WCDDQGLALQVETAPEELPQT--EADARSWRYRCLTQLTNANGADAV-TGHTASDRAETL 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +++ R G+G + + RP L R + + DP Sbjct: 143 LLQASRGSDLAGLGSLRAVRPLQAHAPEEAQLRRPLLGFSRSETVQICSDLQLPIWNDPG 202 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSII 250 N F R R+R V + ++ DL +++ L LT + Sbjct: 203 NQSTDFARNRIRHEVMPVLEELNPGCSRRLADLAERMSQLRDTQQNLAALALTTLQSNEG 262 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRG 300 + + + LL Q +PG + +E++ L+ Sbjct: 263 LDRKALGLLPQPTRRQLLAQWL----NQQGVPGLDAPTLEQLSHRLRQAAPA 310 >gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97] Length = 774 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 104/322 (32%), Gaps = 59/322 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +AVSGGSDSM L +++ ++ A VDH R + E + V+ L Sbjct: 41 RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNL 100 Query: 81 RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V++ + + + G AR RY ++ + ++ H DD +ET Sbjct: 101 GVQSKVLTLQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETAL 160 Query: 137 MRSQRDYAEKGM-------------GLSGMC----------------------------- 154 MR + + + G+ GL G+ Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMDGTILHLCSEIP 220 Query: 155 ---------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 + +++ RPF + + + + I + D +N D F R V Sbjct: 221 SCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTNDDLTFTIRNTV 280 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261 R+ + D L+ L K ++ + + + I Sbjct: 281 RQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSLDTRFGTMVIKM 340 Query: 262 TLLFYLLRVSAAICGGQISLPG 283 ++ L + ISLP Sbjct: 341 PMMSELPKHQRNAVQAHISLPD 362 >gi|319936954|ref|ZP_08011364.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1] gi|319807890|gb|EFW04469.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1] Length = 411 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 12/187 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ VSGG DSM LL L V++ R + + V D C+ + Sbjct: 13 VIGVSGGCDSMYLLDTLRK-------KGYHLLVAHVNYNYRHDSYIDYELVCDYCATHGL 65 Query: 83 AHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + AR RY E K ++ H DD LETVYM+ +R Sbjct: 66 PFYYKQFHEADYHDGNFQDQARTLRYRFYKEIYKLYKCDGLILGHHLDDHLETVYMQLER 125 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 +G+ Y ++ + RP +R +++I +++I + +D +N + FER Sbjct: 126 HNTVHYLGI----KEESYVQDMRVIRPLMRSYKDEILQVCHEQHIEYHDDYTNFEIDFER 181 Query: 202 VRVRRFV 208 R+R + Sbjct: 182 DRIRNTI 188 >gi|315498689|ref|YP_004087493.1| pp-loop domain protein [Asticcacaulis excentricus CB 48] gi|315416701|gb|ADU13342.1| PP-loop domain protein [Asticcacaulis excentricus CB 48] Length = 375 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 73/351 (20%), Positives = 132/351 (37%), Gaps = 30/351 (8%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108 G+ +VDH + + + R V + L + +V+ W+ KP++GL AAAR AR+ Sbjct: 11 GQRPLEVFTVDHGVNPQSAEWARGVEALGRELGLPLTVLRWEGDKPRSGLQAAARRARHH 70 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 LI + A+ + ++ H DD E MR++ L ++ RP Sbjct: 71 LILDAARAKDIRVLCLGHNADDVAEAAAMRAE-GSTVGAPKLWSPAPFWPQGEGMFYLRP 129 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-VRDIDLHALYLKMKKFQDLR 227 L R +R +L +S+ +DP+NT+ + R RVR+ V + H + DL Sbjct: 130 LLGVGRARLRDWLKTVGMSYVDDPANTNPAYLRARVRQQGVTPSETHRR--RAPSSPDLT 187 Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + + + + + +L GG LP + + Sbjct: 188 ESI-----------------KVKQMGAAFFYVPTLPPPEMLSALVVCAGGGDKLPRHAEL 230 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE-TTVWDGRYQF-- 344 + + R ++ I+ I R ++ PE +WDGRY+ Sbjct: 231 AHIRAAASA-GRRRFTLCGARIEAHEGGWLICREPGDMTRNGSRPERIGGIWDGRYRVPT 289 Query: 345 ----QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + + S + G+PP + + AL + E + L A Sbjct: 290 YTIGGEIVPAKGHLNALSREERLRLKGLPPAV-RAALPVLKHNESVRLLAA 339 >gi|61216588|sp|Q7NNL0|TILS_GLOVI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 325 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 16/320 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS +R + L + +LVAVSGG DS+ LL L + +R + +DH Sbjct: 11 LSLRRRLRPALGLLPPGSGLLVAVSGGQDSLCLLKLLVDLAPERG---LHLHVGHLDHRW 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R ++ + + V+ +C+ + + ++ AAAR RY + + A+ + + Sbjct: 68 RPGSERDAQRVAVLCNVWGVPFH---LEIARTPPASEAAARAWRYCWLEQIARGLALERV 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T HT D+ ETV R G+G + + RP L R + ++ L Sbjct: 125 VTGHTLSDRAETVLFNLLRGSGGAGLGSLDW--ERPLGGGVRLVRPLLGITRAETGAYCL 182 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 ++ C D SN + F R R+R + +++ + +A + L+ L Sbjct: 183 AHHLPICIDESNANLTFRRNRIRLELMPYLREHFNPLVEQTLARTGDILHAESELLESLL 242 Query: 243 TVHMRSIIAI----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 H S++ + + L +R ++ G+ P + + V+ L + Sbjct: 243 DEHWHSLVQEGRLHRNTLAALPLALQRRAVRRWLSVGLGRQ--PNFEHIAAVLGCLSAPN 300 Query: 299 RGCVS--IGRVVIDRRANFL 316 R S ++++ + +L Sbjct: 301 RTRTSPLAHSLLVEVQGEWL 320 >gi|330807798|ref|YP_004352260.1| transcription factor, ExsB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375906|gb|AEA67256.1| putative Transcription factor, ExsB family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 442 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 113/305 (37%), Gaps = 18/305 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +A SGG DS + V + SAI V H L+ A+ + VC+ L + Sbjct: 27 IAFSGGLDSTV--LLHLLVTLSQRQPLPALSAIHVHHGLQAVAEAWPDHCRSVCAALGVP 84 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 VV+ + +P + AAREARYA A + +++TA DDQ ET+ R R Sbjct: 85 LDVVTVQV-RPGASVERAAREARYAAF--VAAIHSDEVLLTAQHRDDQAETLLFRLLRGA 141 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 KG+ + + RP L R ++ ++ Q+ +SW EDPSN D R R Sbjct: 142 GVKGLAAMPPQRPL---GQGHLLRPLLDVSRVELEAYARQQGLSWIEDPSNDDHRHARNY 198 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 +R+ V + + A +L R+ D L + S Sbjct: 199 LRQRVFPVLAEQWPQASTTLARSAAHMGEAQTLLDDLARIDLARAATPGVFDWLGLQSLA 258 Query: 264 LFYLLRVSAAICGGQIS--------LPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313 L L +S A +S LP + R + + R A Sbjct: 259 LAPLRALSPARQRNALSHWLAPMTLLPDTDHWSGWDSLRDAADDARPIWRLAGGELHRAA 318 Query: 314 NFLWI 318 +W Sbjct: 319 GRVWW 323 >gi|294012454|ref|YP_003545914.1| cell cycle protein MesJ [Sphingobium japonicum UT26S] gi|292675784|dbj|BAI97302.1| cell cycle protein MesJ [Sphingobium japonicum UT26S] Length = 314 Score = 163 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 14/177 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VAVSGG DSM LL R A +VDH LR+ + E V+D C IA Sbjct: 28 VAVSGGPDSMALLDLAARAFPGR------VEAATVDHGLRDASAVEAAMVADWCRDGGIA 81 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H+ + + + + + + AR RYAL+ E ++TAH DDQLET+ MR R Sbjct: 82 HATLHPQGA-VRGNVQSWARAQRYALLEEWRAARGLDWLLTAHHADDQLETLLMRLNRGA 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 + + RP L R+ D+ ++ L+R + +DPSN D RF+ Sbjct: 141 GVG-------GLAGVRARQGAVLRPLLGMRKADLLAYALERGLPHVDDPSNGDARFD 190 >gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b] gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b] Length = 313 Score = 163 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 14/297 (4%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L++ + + + +VDH LR A +E R V + L H ++ W+ Sbjct: 1 MALMLLAARWSLRETK---RIAVATVDHGLRPEAAEEARRVGEWARALGFEHHILRWEGE 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 KP++ + AR+ARY L+++ A+T+ A+ I+ AH DDQ ET+ R R GL+G Sbjct: 58 KPRSRIQERARDARYRLLADCARTVGASAIVAAHHADDQAETILFRLTRGSGV--AGLAG 115 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 M D RP L R++ + + + DPSN + + RVR+R + Sbjct: 116 MAPASRLDGLAL-LRPLLGLRKQALEALCEAAGQPFFRDPSNENPAYARVRLRSLSALLA 174 Query: 213 LHALYLKM-----KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFY 266 L + + + A A + S ++ + + LL Sbjct: 175 EQGLSVDALLRLSARAARAEEALVEAAAEAAAALPAMRDASTFRVAAAPMAALPRELLRR 234 Query: 267 LLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 ++ GG R+ ER+ L +G ++G V I + L I Sbjct: 235 VVAAEVMRIGGAEPRLERQERACERLHEALAAGASFKTTLGGVTIALATHALTIRPE 291 >gi|144227507|gb|AAZ44292.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J] Length = 297 Score = 163 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + L+ VSGGSDSM LL + +++ LR A E VS Sbjct: 4 KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + + ++S+ + K + L + R RY + K N T ++ H DD LET Sbjct: 55 KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193 V+++ ++ G+ + N+ I RPFL R ++ I Q+ I + +D S Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIQICQQKKIPYLDDQS 170 Query: 194 NTDDRFERVRVRRFVR 209 N +++R ++R + Sbjct: 171 NFTGKYQRNQIRFLLE 186 >gi|88809954|ref|ZP_01125459.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805] gi|88786144|gb|EAR17306.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805] Length = 339 Score = 163 bits (414), Expect = 4e-38, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 24/300 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+A+SGG DSM LL L + R DH + + ++ Sbjct: 25 LPRGTTLLLALSGGQDSMALLGLLRDL---RKHHHWTLQLWHGDHGWHPGSACVSKDLAK 81 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------IMTAHTF 128 C++ + V +++ T AAAR RY+ +S++A+ +N T ++TAHT Sbjct: 82 WCAQEALPLRV--SRSTAEMTSGEAAARAWRYSELSQYAQQLNQTCASSNSCTVVTAHTA 139 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNI 186 D+ ET+ M+ R G+G + + + RP L RE+ + + Sbjct: 140 SDRAETLLMQLSRGTDLAGLGSLRQSRPLQANASNGPRLVRPLLDFTREETAAICQDLQL 199 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN------NAVAMLIPK 240 DPSN+D R ER R+R + + ++ L +++ NA+ L + Sbjct: 200 PVWHDPSNSDLRIERNRIRLELLPVLESLHAGCSRRMALLSERISQVHDTQNALVDLSLQ 259 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + + L D LL+ G + +E + + + Sbjct: 260 SINSPGNGLQRPPLQALAPDPR--RTLLQRWLQQRGVRSLQAR--QLEELSRAIGPQQPP 315 >gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893] gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893] Length = 721 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 100/299 (33%), Gaps = 62/299 (20%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +AVSGGSDSM L+ + S + A VDH R + E V+D +L Sbjct: 41 RIGLAVSGGSDSMALVYLCSQLASQGFIPGLDIKAYIVDHKYRPESSHEAHSVADCVEKL 100 Query: 81 RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V++ + + G AR RY ++ + ++ H DD +ET Sbjct: 101 GVRSKVLTLQWPDGEALTKKGFETQARMLRYQILGKACTKDGVKALLLGHHQDDNVETAL 160 Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160 MR + + + G+ GL G M TI Y Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGSATSLQDILRSATMDGTISYPSSEIP 220 Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 +++ RPF + + + + NI + D +N D F R V Sbjct: 221 PRSFNSNTGEMKVSTGGIYLFRPFRSFSKSRLVATCQENNIPFVSDATNEDHTFTIRNTV 280 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 RR + L L+ L K + + +ILN D+ Sbjct: 281 RRLLESETLLPRALQRPSILSLVDKSREQTEKFRELC------EFLLKNVEILNFDTRF 333 >gi|148906402|gb|ABR16355.1| unknown [Picea sitchensis] Length = 410 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 62/340 (18%), Positives = 116/340 (34%), Gaps = 36/340 (10%) Query: 9 VRFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 V+ R+L ILVAVSGG DS+ LL L + + K + DH Sbjct: 72 VKRLARNLSDRHLVQAGERILVAVSGGQDSICLLWMLSQLQQSWEW---KVGVVHCDHQW 128 Query: 63 RETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + + +V+ V + AR RY ++ A + Sbjct: 129 NPQSSAAQASHVAHVAREMGYDFYQSLPTMDAFG---ETRARTWRYGVLHRIALRHAYDV 185 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-------LNLWISRPFLRCRR 174 ++TAHT D++ET+ R +GM ++ + RP L R Sbjct: 186 VITAHTASDRIETLLHNLFRGTGLQGMQSLTWTREFRVRVPYHKPYKHVRLVRPLLDTTR 245 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDL 226 ++R + DPSN + R R+R + + + Sbjct: 246 TELRKLCETLQLPLWPDPSNFNLEINRNRIRHELLPYLRENFSSGIDRNLARWVEILHGE 305 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYR 285 +++ + K T ++ + I+ + L +L+ G+ + + Sbjct: 306 ESFLHSLCENIRSKAETSMDHGVMKLDVSIVESLPLALQRRVLKQFIESHTGKSAC--FD 363 Query: 286 SMERVMLF----LKSGKRGCVSI-GRVVIDRRANFLWITR 320 ++E++ L KR VS+ G + + + + R Sbjct: 364 TIEKLRLAYGHTSNGNKRVRVSLRGGFEVHLQEKMILLLR 403 >gi|15829251|ref|NP_326611.1| hypothetical protein MYPU_7800 [Mycoplasma pulmonis UAB CTIP] gi|61216719|sp|Q98PE3|TILS_MYCPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|14090195|emb|CAC13953.1| conserved hypothetical protein [Mycoplasma pulmonis] Length = 286 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 110/278 (39%), Gaps = 19/278 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL F V++ R ++K + + V D C + I Sbjct: 3 LIAVSGGPDSMLLLDV---------FKHHDIVVAHVNYNKRNSSKRDQKIVEDYCFKNNI 53 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +++ + + + AR+ R+ + N I+ AH DD +ET ++ + Sbjct: 54 KLEILNLTDYEVKGNFHDWARKKRFDFFKLVYEKYNCDEILLAHHKDDFVETFLIQKNQK 113 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + ++ + I+RPF+ + I L + I + +D +N ++ + R Sbjct: 114 RKPLYWSI----KSKNFNFGMNINRPFIHKYWKNQILKILDNKQIFFGQDETNKENIYLR 169 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 ++R + + + + +K K+ + + + ++ Q+ L S Sbjct: 170 NKIRNNLLNKEFLKRLIYIKILFLNFFKL-RKIKKIEQDFNKWKEQNFDK--QNFLK--S 224 Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 L+ + + +++++ F+ S K Sbjct: 225 KFQENLITIFISEKTNNSINLSRGKIQQIIKFINSEKN 262 >gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82] Length = 487 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 30/225 (13%) Query: 14 RSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDR---SFGKIKFSAISVDHCLRETAK 67 L++P+ + VA SGG DS LL ++ L + S + + +VDH L++ + Sbjct: 13 HHLIWPSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVISFTVDHDLQKKSS 72 Query: 68 DEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 D + + + H V P AR+ARYAL+ + + Sbjct: 73 DMANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADV 132 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---------------W 164 ++ H DDQ+ET MR + G G C + W Sbjct: 133 DVLAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMGAGIDERSLSWAGHKGMSKW 192 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208 I RP L ++ I + Q N+ + DP+N R +RR + Sbjct: 193 IVRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIRRLI 237 >gi|54020383|ref|YP_115689.1| hypothetical protein mhp176 [Mycoplasma hyopneumoniae 232] gi|61216451|sp|Q601M6|TILS_MYCH2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|53987556|gb|AAV27757.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232] Length = 297 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + L+ VSGGSDSM LL + +++ LR A E VS Sbjct: 4 KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + + ++S+ + K + L + R RY + K N T ++ H DD LET Sbjct: 55 KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193 V+++ ++ G+ + N+ I RPFL R ++ I Q+ I + +D S Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKKIPYLDDQS 170 Query: 194 NTDDRFERVRVRRFVR 209 N +++R ++R + Sbjct: 171 NFTGKYQRNQIRFLLE 186 >gi|193217036|ref|YP_002000278.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma arthritidis 158L3-1] gi|193002359|gb|ACF07574.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma arthritidis 158L3-1] Length = 307 Score = 163 bits (413), Expect = 5e-38, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 16/207 (7%) Query: 6 IESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 I+ ++L + L+AVSGG DSM LL V++ RE Sbjct: 2 IDKEELLNKALNDKKSKKLIAVSGGPDSMFLLNLFKEH---------NVVVAHVNYNKRE 52 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIM 123 + + V C I + + S K + AR+ RY + ++ Sbjct: 53 DSNIDETIVRSYCKSHSIPYEIYSIKKGTNIKGNFQDWARKERYHFFKQIYDKYQCDYLL 112 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLL 182 AH DD LET M+ + + G+ + + I RP + +++I+ + Sbjct: 113 LAHHKDDFLETAIMQKEAKRKPEYFGI----RPVNSFDGMQIIRPLIFTFWKDEIQKECI 168 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVR 209 + I + D +N + R +R+ ++ Sbjct: 169 RLKIKFAIDSTNDKGVYARNIIRQKLK 195 >gi|330723804|gb|AEC46174.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis MCLD] Length = 252 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 13/188 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL L A V++ LR + + + V C + +I Sbjct: 11 LLAVSGGPDSMFLLNKLK---------NKNIVAAHVNYHLRADSNVDQQIVEKFCQKHKI 61 Query: 83 AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S K + + AR RY S+ K N ++ AH DD +ETV+++ + Sbjct: 62 KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ LY++N+ F +E+I + L ++NI + D SN+ D ++R Sbjct: 122 KKEVNYWGIK--KKNFLYNMNITRIFLFKYF-KEEIINLLNKKNIHFAIDSSNSKDIYQR 178 Query: 202 VRVRRFVR 209 ++R + Sbjct: 179 NKIRHKLA 186 >gi|304373319|ref|YP_003856528.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1] gi|304309510|gb|ADM21990.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1] Length = 292 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 13/188 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGG DSM LL L A V++ LR + + + V C + +I Sbjct: 11 LLAVSGGPDSMFLLNKLK---------NKNIVAAHVNYHLRADSNVDQQIVEKFCQKHKI 61 Query: 83 AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++S K + + AR RY S+ K N ++ AH DD +ETV+++ + Sbjct: 62 KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+ LY++N+ F +E+I + L ++NI + D SN+ D ++R Sbjct: 122 KKEVNYWGIK--KKNFLYNMNITRIFLFKYF-KEEIINLLNKKNIHFAIDSSNSKDIYQR 178 Query: 202 VRVRRFVR 209 ++R + Sbjct: 179 NKIRHKLA 186 >gi|187924484|ref|YP_001896126.1| tRNA(Ile)-lysidine synthetase [Burkholderia phytofirmans PsJN] gi|187715678|gb|ACD16902.1| tRNA(Ile)-lysidine synthetase [Burkholderia phytofirmans PsJN] Length = 481 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 137/404 (33%), Gaps = 25/404 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+V F + +L A I VA SGG DS LL A+ V G + A+ V H L Sbjct: 14 LEAVGFSLSTLSANARIAVAFSGGVDSSVLLDAVVRVA-----GASRCIALHVHHGLSAH 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + + + + S+ + AAAR+ARY + + + + Sbjct: 69 ADAWLAHCEAFARERGVEFAAERVELSRDAGVSVEAAARDARYRALDDMCASRGVATLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + RP L R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYLPAGALATRVRPLLHLLRAQLEQYASGR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +D SN D R+ R +R V L + + + L+ + Sbjct: 188 ALRWIDDESNADTRYARNALRHEVTP-ALAVHFPGFRDALARTAAHAASAQRLLDALARI 246 Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 M+ L+ D+ LL Y +R + L R Sbjct: 247 DMQEASRDEGRALSHDALLAFDDDRALNLLRYWMRTLGLVAASSARLGDALRQLRETGAA 306 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDS 350 G + + ++ + P V W G ++ Sbjct: 307 GEGHGLRIDHAGQALRSYRGLVYWEAGDSSDPADETALAARAVSELAWQGESIWRLPQWR 366 Query: 351 LIQIGPQSYRKADVPSG---IPPIIAQRALSSMPSKEGGKPLLA 391 + Q++ A G IP + QRA+ S S+ GG+ + Sbjct: 367 GTFVFAQAHADAAFGEGDAMIPVSVLQRAVLSARSRSGGERMRT 410 >gi|85057872|ref|YP_456788.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma AYWB] gi|123518068|sp|Q2NIN4|TILS_AYWBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|84789977|gb|ABC65709.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma AYWB] Length = 436 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 15/242 (6%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +E+++ SL ++AVSGG DSM LL L + KIK + +H Sbjct: 1 MENIKLAC-SLETNQTYIIAVSGGVDSMALLHYLVA-------QKIKLQVVHFNHLTNSN 52 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 V + C + + ++ + PQ A AR R + + A I+TA Sbjct: 53 TWKNKELVKNYCLQNSLGFH--YFELNCPQKNFQAQARLLRQQKLMQIAAKHRTPFILTA 110 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD ET+ + R +G SGM + + +PFL + I S+ Sbjct: 111 HHLDDLAETILQKISRSSTL--LGYSGMQIQTSW-TDFIFLKPFLYIPKAKIISYAAFYK 167 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I + ED +N ++R ++R V + ++K+Q ++ N + +LT Sbjct: 168 IPFLEDYTNQKLTYQRNQIRHQVIPYLKTQTSFLQNIQKYQQTLLQAYNFIRKQTLLFLT 227 Query: 244 VH 245 H Sbjct: 228 KH 229 >gi|319762814|ref|YP_004126751.1| tRNA(ile)-lysidine synthetase [Alicycliphilus denitrificans BC] gi|330824894|ref|YP_004388197.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601] gi|317117375|gb|ADU99863.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans BC] gi|329310266|gb|AEB84681.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601] Length = 335 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 119/332 (35%), Gaps = 26/332 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +S + + + V +SGG+DS LL+A + A V H L+ A Sbjct: 3 QSFDAAMHAFAPRLPLAVGLSGGADSTALLLACA------GRWPGQVHAFHVHHGLQAAA 56 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL---- 121 ++ +C+RL++ SV AAR+ARY A A Sbjct: 57 DGFEQHCVALCARLQVPLSVRRVDARHASGQSPEDAARQARYKAFEALALDNQARAAIGT 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I A DDQ+ET+ + R G+ L SRP LR D+R++L Sbjct: 117 IALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWERGGLHWSRPLLRVAGADVRAWL 173 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 Q+ W EDP+N D+R+ R +R L AL F+D + A Sbjct: 174 QQQGEHWVEDPTNADERYTR----NRIRRRLLPALQQAFPHFRDTFARSCAHAAQASELL 229 Query: 242 LTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294 + + A+ Q + + +LR G ++++ Sbjct: 230 QELARADLAAVGQPPRIAALRLLSRARQANVLRHWLRSAHGTTPASAQLDALLDQIAACA 289 Query: 295 KSGKRGCVSIG-RVVIDRRANFLWITRAVRNL 325 G R + +G V+ W R V +L Sbjct: 290 TRGHRIHLKVGSGHVVREAGALGWYNRPVLDL 321 >gi|159904318|ref|YP_001551662.1| ATPase [Prochlorococcus marinus str. MIT 9211] gi|159889494|gb|ABX09708.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Prochlorococcus marinus str. MIT 9211] Length = 339 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 108/287 (37%), Gaps = 23/287 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +L+++SGG DSM LL + + R + K DH + + + + Sbjct: 29 LPKGSSLLLSISGGQDSMALLKLIVDL---RRLYEWKIFIWHGDHGWHKQSTQIATGLKE 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHTF 128 C+ + VS + +K + AAR RY ++ HA+ ++ ++T HT Sbjct: 86 WCNNQELRF--VSERATKEKIHSEQAARNWRYECLTAHAQLLSQQNQSSPCHYVLTGHTS 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D+ ET+ + R G+G + + + + RP L RED + ++ Sbjct: 144 TDRAETLLLNLSRGTHLSGLGS--LKSSRTLSGQIKLVRPLLIFSREDTAQICKEMDLPV 201 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-----NNAVAMLIPKYLT 243 DPSN++ R R R+R V + ++ L ++ + ++ Sbjct: 202 WLDPSNSNMRISRNRIREEVIPVLETLHPGSTRRIASLAERLGSLKDDQEALTILAIEAI 261 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + Q ++++ + G + +E + Sbjct: 262 KDSEGLSR--QKVISLPRNTRRTVFAKWLKQSG--VPALKASQLEDI 304 >gi|262369825|ref|ZP_06063152.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046] gi|262314864|gb|EEY95904.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046] Length = 448 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 20/282 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 H L+ SGG D ++ + + AI +DH L++ + +V + C L Sbjct: 32 HFLIGCSGGMD------SMLLLHLMSHLFPKRIRAIYIDHQLQDVSPQWGSFVQEQCYVL 85 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + + + AR ARYA +H +++ AH DQ ETV +R Sbjct: 86 DVPCVIQAVDVD--TGNVESQARSARYAAFQKHLLAN--EILVLAHHQQDQAETVLLRLL 141 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ D I RP L R+ I + + + +D +N D ++ Sbjct: 142 SGAGIHGLAAMQSIDI---REQFTIWRPLLALSRQQIELWAAEMQLRNIQDQTNFDTSYD 198 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R R + I L + KM++ + ++ LT S + +LN+ Sbjct: 199 RAWCRAELWPI-LEKRFPKMQQALARTSYLMQDAETILADVLTQDWASCG--NAAVLNLT 255 Query: 261 STLLFYLLR----VSAAICGGQISLPGYRSMERVMLFLKSGK 298 R +SA + G + P + ++R+ + K Sbjct: 256 PFRQLSAPRQRQLLSAWMKGEDLYRPAFDMVQRLFDEVIESK 297 >gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis RB2256] gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis RB2256] Length = 284 Score = 163 bits (412), Expect = 7e-38, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 24/286 (8%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL + S+L + A +VDH LR+ + DE R V+ C+R I HS + Sbjct: 1 MALLWMMVSLLPG------QVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTP 54 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 L AAAR RY L+ + + I+TAH DDQLET+ MR R G+ Sbjct: 55 IRG-SLQAAARTERYRLLEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLA--- 110 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-- 210 + N + RP L RR ++ L ++ + +DPSN+DDRF+R R+R +R Sbjct: 111 ----AIRATNGAVLRPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALRSQT 166 Query: 211 -IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 +D A + ++ V LI + ++I + ++ + LR Sbjct: 167 ALDPVAAAKSAAWLAEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLR 226 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 +A +++ V+ +++G+R +G ++ID Sbjct: 227 ANAPQLA-----LRGAALDGVIAAMRAGRRA--MVGALLIDADRGL 265 >gi|291460211|ref|ZP_06599601.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417158|gb|EFE90877.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str. F0262] Length = 351 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 34/303 (11%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V F+R + IL+A+SGG+DS+ LL+ L + + SF A V H +R Sbjct: 5 EKVERFIRERRLIGAGDTILLALSGGADSVYLLLILEKLRGELSF---SLHAAHVQHGIR 61 Query: 64 E-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI- 117 A+ ++ + ++ R +I V + K GL AR RY + + I Sbjct: 62 GKEAERDLEFSREIAERFKIPFHGIFVNVPEFSRKHHLGLEEGARLLRYRSLRDCLSEIM 121 Query: 118 --------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 I A +DQ ETV R +G+ + I RP Sbjct: 122 DKAPERAGGRGKIAVAQHGNDQAETVLYHLFRGSGLRGL-------RGMEAEKDGIIRPL 174 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKK 222 L +E+I S L ++ I+ ED +N D + R R+R + L + + Sbjct: 175 LPILKEEILSELSEKGIAHREDSTNRDLSYARNRIRERILPEAERLNAGALPHILRTAEL 234 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 + + + K + I + L +LR + + + P Sbjct: 235 IGEAEDLLLERAEEIFRKEGEELLEGGELWGFRISVLSLRPLRPILRRTLLLLMSERLSP 294 Query: 283 GYR 285 G + Sbjct: 295 GRK 297 >gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480] gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480] Length = 717 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 103/322 (31%), Gaps = 59/322 (18%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I +AVSGGSDSM L ++S + A VDH R + E V+D +L Sbjct: 41 RIGLAVSGGSDSMALAYLCSRLVSPDFIPGLDLKAYIVDHKFRPESSREAHLVADRIEKL 100 Query: 81 RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I V++ +T G AR RY + + + ++ H DD +ET Sbjct: 101 GIQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLLGHHQDDNVETAL 160 Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160 MR + + + G+ GL G M T+ Y Sbjct: 161 MRVSKGHRKLGLIGFDEIAPIPECHGLYGVSKSGFTASLQDIVESTNMDGTVPYPSSRII 220 Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 +++ RPF + + + I + D +N D F R V Sbjct: 221 ARNINSTSGQMQISTGGVYLLRPFRSFSKPRLVATCQDNKIPFVSDSTNEDRTFTIRNTV 280 Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNIDS 261 R+ + DL L+ L K +L L L I Sbjct: 281 RQLLESEDLLPRALQRPSILSLVDKSREHTEKFRLLCDSLLKKVEILNFDTHFGTLVIKM 340 Query: 262 TLLFYLLRVSAAICGGQISLPG 283 + L + Q SLP Sbjct: 341 PAMSELPQDQRKAVDKQTSLPD 362 >gi|170761927|ref|YP_001752156.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|183508435|ref|ZP_02957979.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701596|ref|ZP_02971305.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168827504|gb|ACA32766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|182675843|gb|EDT87748.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700826|gb|EDU19108.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 330 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L I+ V++ RE++ + + V D Sbjct: 12 ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + AR RY E K N + AH FDD Sbjct: 63 CRKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L R++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D +ER RVR+ + L+ +Y KKF K +++ A I + + Sbjct: 179 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 236 Query: 252 ISQDILNIDSTLLFYLL 268 + D + +YL+ Sbjct: 237 KYDYFIRQDDMVQYYLI 253 >gi|13357633|ref|NP_077907.1| hypothetical protein UU077 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|61217428|sp|Q9PR68|TILS_UREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|11356774|pir||A82937 conserved hypothetical UU077 [imported] - Ureaplasma urealyticum gi|6899028|gb|AAF30482.1|AE002107_6 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970] Length = 333 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L I+ V++ RE++ + + V D Sbjct: 15 ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 65 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + AR RY E K N + AH FDD Sbjct: 66 CRKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 125 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L R++ ++ + + I + D Sbjct: 126 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 181 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D +ER RVR+ + L+ +Y KKF K +++ A I + + Sbjct: 182 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 239 Query: 252 ISQDILNIDSTLLFYLL 268 + D + +YL+ Sbjct: 240 KYDYFIRQDDMVQYYLI 256 >gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500] gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500] Length = 630 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 73/418 (17%), Positives = 131/418 (31%), Gaps = 93/418 (22%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P I +AVSGG DSM L + R +++ A VDH RE + +E VS S Sbjct: 42 PRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFVVDHKFREESTEEAHKVSSWLS 101 Query: 79 RLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + I V++ K + AR RY + + ++ H DD +E Sbjct: 102 NMDILSEVLTLDWEAGETPKKKMAFETLARTKRYQALGKACFKNQLNTLLIGHHLDDNVE 161 Query: 134 TVYMRSQRDYAEKGM-------------GLSGMCDTILYD-------------------- 160 T +R +G+ GL G+ ++ ++ Sbjct: 162 TGLLRMTPTAKLEGLAGIAPVARIPECHGLWGVSESGSFETIRGRQRSFEFDLDEGKLTH 221 Query: 161 ------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF 207 + + RP L + I + N+ + DP+N+D R +R Sbjct: 222 FSADDWSFTMATGGILLCRPLLPFYKASILETCREANVPYVTDPTNSDPTLTMRNTIRSL 281 Query: 208 VRDIDLH---ALYLKMKKFQDLRVKVNNAVAM---LIPKYLTV---HMRSIIAISQDILN 258 + + RV + + ++ L+ + S + + L Sbjct: 282 LESDKFPRALRPASMSAFLANNRVSLLDIMSETDKLLRDCQLLKFYPNSSTMEVIFPTLP 341 Query: 259 IDS------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG-----KRGCVSIGRV 307 +DS +L LR + + L R+ +R ++ V Sbjct: 342 VDSPDAQNIRILAAALRRITNLITPRPEL--KNQALRLYERFAQDIFTGQQRDDFTVAGV 399 Query: 308 VIDRRA-----------NFLW-ITR--------AVRNLPTLILYPEETTVWDGRYQFQ 345 + + +W I+R V + L +WD R+ Q Sbjct: 400 HFKLQESPNNKEGGVLFDNIWHISRTPFMTGQEPVLEIDNLSDEWSAPVLWDNRFWLQ 457 >gi|144575318|gb|AAZ53579.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448] Length = 297 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + L+ VSGGSDSM LL + +++ LR A E VS Sbjct: 4 KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C + + ++S+ + K + L + R RY + K N T ++ H DD LET Sbjct: 55 KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193 V+++ ++ G+ + N+ I RPFL R ++ I Q+ I + +D S Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKRIPYLDDQS 170 Query: 194 NTDDRFERVRVRRFVR 209 N +++R ++R + Sbjct: 171 NFTGKYQRNQIRFLLE 186 >gi|217967258|ref|YP_002352764.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724] gi|217336357|gb|ACK42150.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724] Length = 455 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 137/336 (40%), Gaps = 33/336 (9%) Query: 3 LSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 L IE V F RS + I+++VSGGSDS+ L L+++ +K + + Sbjct: 8 LDYIEKKVLNFTRSESLISLGDSIILSVSGGSDSIALSEILYNLSP---ILGLKLHIVYI 64 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH +R+ E + D + I +S + P+ R+ RY + + ++ +N Sbjct: 65 DHHVRKNTYKEKELIKDYATSRNIPYSFLDIY---PKDFTEKTLRDERYKALIKFSEELN 121 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I HT DDQ+ET+ M KG G+ G+C + RP + + ++ Sbjct: 122 FNKIALGHTLDDQIETIIMNFF-----KGYGMEGLCGIPVKRD--KFIRPIIILSKSEVI 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + ++++ + +D +N R R+R + + L +++F + + + + Sbjct: 175 EYCERKSLKYIDDFTNLLPITLRNRIRHQI----VPFLKETIQQFPQSVISQSKILYIEN 230 Query: 239 PKYLTVHMRSIIAI----------SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 + + + +D + + +L+ ++S G + Sbjct: 231 DFLKNISLEYFNKLKGSNTMIEIEREDWNTMHDAIKIRVLKEVFKDFNEELSNEGIFYIL 290 Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324 + + +K GK ++IG V I +++ + RN Sbjct: 291 KEVSEIKEGK--TINIGNVEIYIYNKKIYVYKKERN 324 >gi|308233644|ref|ZP_07664381.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae DSM 15829] gi|328944407|ref|ZP_08241869.1| PP-loop family protein [Atopobium vaginae DSM 15829] gi|327490991|gb|EGF22768.1| PP-loop family protein [Atopobium vaginae DSM 15829] Length = 509 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 40/332 (12%) Query: 20 AHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKD-EVR 71 A +L+ VSGG+DS L + + R I + + V+H LR + + Sbjct: 24 APVLLMVSGGADSSALTLLAATSQLDLEDGRGCAPIAKERLHILHVNHGLRGASAQADEE 83 Query: 72 YVSDVCSRLRIAHSVVSWKNSK--------PQTGLMAAAREARYALISEHAKTI------ 117 +V ++ S I V ++ + + R RY + E K + Sbjct: 84 FVLELASHFGIVFHVAHVDVARLAAQKTLSGEKNIENVGRMVRYKVAFELIKKLCQQTHT 143 Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I+TAHT D++ET ++ A KG LSG+C + I RP L E Sbjct: 144 RVQDARILTAHTASDRVETFFLN-----ATKGSALSGLCS--IPRRRSIIVRPLLDTTHE 196 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-------FQDLRV 228 ++ L Q ++WCED +N D + R +R + +++ +D Sbjct: 197 ELCDMLTQHGMTWCEDQTNHDTHYARAYMRHVIVPKLKQKNPHLIERICSTCDILRDENN 256 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 ++N + + S++ + L + D L ++R++ I L + Sbjct: 257 YMDNVARRHLESLIRRKTESVLVLDALRLSSEDVALARRMVRLALMQMACDIRL-DTAHI 315 Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 E ++ + +G + + L+I Sbjct: 316 EAILRCVAAGIGSLSLANSLSVRVEHGMLFIR 347 >gi|227546576|ref|ZP_03976625.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|312133972|ref|YP_004001311.1| mesj [Bifidobacterium longum subsp. longum BBMN68] gi|227212893|gb|EEI80772.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|311773271|gb|ADQ02759.1| MesJ [Bifidobacterium longum subsp. longum BBMN68] Length = 388 Score = 162 bits (411), Expect = 8e-38, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 LGPVILRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM +RP L R + + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 + + R RVR + + + ++ + + M +A Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVA 278 >gi|282852626|ref|ZP_06261968.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1] gi|282556368|gb|EFB61988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1] Length = 238 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 11/222 (4%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L L + L + S + +DHCLR+ + E + + + +I SW + Sbjct: 1 MALFHMLVNFLPNPSK---QLIVAHLDHCLRKDSYLESELLQKLTTAFKIKLIEKSWPVA 57 Query: 93 -KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 PQTG+ A ARE RYA ++ K ++TAH DD +E + ++ R M Sbjct: 58 LHPQTGIEAKAREFRYAFLAHTGKKYQVDYLLTAHHGDDLIENILLKFIRSGDVAEMNSL 117 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + ++ + RP ++ ++ + + + + + ED +N +D R R+R +V + Sbjct: 118 QIVGNL---DSMRLLRPLIKYSKDQLLEYDKRNGLDYIEDETNFEDDTLRNRLRHYVVPL 174 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 L + + + + + A+L + I+ I Sbjct: 175 ----LKKETNHLVENAYRFSESAALLSDCQNSFFESLILPID 212 >gi|87123278|ref|ZP_01079129.1| possible MesJ-like protein [Synechococcus sp. RS9917] gi|86168998|gb|EAQ70254.1| possible MesJ-like protein [Synechococcus sp. RS9917] Length = 350 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 22/251 (8%) Query: 10 RFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R +R L +L+A+SGG DSM LL L + + + DH + + Sbjct: 12 RRLLRQPHWLPQGGRLLLALSGGQDSMALLALLRDLQPLHRW---QLHLWHGDHGWQAGS 68 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINA-- 119 + C + +V ++ P+ A AR RY ++ A+ +NA Sbjct: 69 SRIAADLQAWCCAEGLDLAVERVTVTRAALESPERS-EAGARAWRYGALAAEAERLNALH 127 Query: 120 -----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 ++TAHT D+ ET+ ++ R G+G + D L + RP + R Sbjct: 128 PQSPCCAVITAHTASDRAETLLLQLARGTDLAGLGGQRSQRPLKSDGELPLVRPLVDFSR 187 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231 D + + + +DPSN D + R R+R V + ++ D + Sbjct: 188 TDTATICQELALPVWQDPSNNDPSYGRNRIRAEVLPVLESLHPGCTERLANLADRMAGLQ 247 Query: 232 NAVAMLIPKYL 242 ++ + L+ L Sbjct: 248 DSQSELMDLAL 258 >gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40] Length = 1612 Score = 162 bits (411), Expect = 9e-38, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 46/244 (18%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S +P + +AVSGG+DSM L L I +A VDH RE + E VS Sbjct: 1030 SRPFPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVS 1088 Query: 75 DVCSRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + ++ S K+ T AR R+ + + + ++ H Sbjct: 1089 QWLQDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHHQ 1148 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---------------------------- 160 DD +ET R KG GL+G+ + Sbjct: 1149 DDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQA 1206 Query: 161 --------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211 + I RP L + + + + NI + DP+N D R +R + + Sbjct: 1207 RNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLLAED 1266 Query: 212 DLHA 215 L Sbjct: 1267 KLPK 1270 >gi|315452584|ref|YP_004072854.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179] gi|315131636|emb|CBY82264.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179] Length = 342 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 14/215 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ SGG DS+ L L + F DH LRE + E+ + + + Sbjct: 17 LLGFSGGGDSVALFHLLLE-------HGLNFDLAIFDHGLREQTRAEIAHAKTLGKLYQ- 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V L A R+ARY T N T ++ AH +D+LE + M+ + Sbjct: 69 -KRVHVGGAKLSGANLEAKCRKARYEFFENMMDTFNYTHLILAHHLNDKLEWLLMQLGKG 127 Query: 143 YAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + +G S N + RP + + + +L + + + ED +N+D F+R Sbjct: 128 ASLQTLLGFSA----SEKRKNYHLIRPLIYTPKSALLDYLHRHKLRYFEDSTNSDLHFKR 183 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 +R + L+ + + + A+ Sbjct: 184 NLIRHTLATPFLNLSGVASGLVRSFKALEQEKHAL 218 >gi|113953772|ref|YP_729309.1| MesJ-like protein [Synechococcus sp. CC9311] gi|113881123|gb|ABI46081.1| possible MesJ homolog [Synechococcus sp. CC9311] Length = 331 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 107/299 (35%), Gaps = 15/299 (5%) Query: 10 RFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R +R L +L+A+SGG DSM L +L + F DH + + Sbjct: 16 RQLLRQPNLLPDGETLLIALSGGQDSMA---LLGLLLGLQHLHHWHFQLWHGDHGWHDQS 72 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + C + + +N++ TG A+AR RY ++ ++ ++TAH Sbjct: 73 AATASELKEWCQGQELDLQI--SRNTRDHTGTEASARSWRYQELAALSQQFCCRTVLTAH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQR 184 T D+ ET+ ++ R G+G + + RP L R+D Sbjct: 131 TASDRAETLLLQLARGTDLAGLGSLRPIRPLQNNDPNGTRLVRPLLTFSRDDTTQICQDL 190 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + DPSN + F R R+R V + ++ + + +V ++ L Sbjct: 191 QLPVWLDPSNANPAFSRNRIRNDVLPVLEELHPGCSQRIAQLSERVSQVEDSQRTLATLA 250 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 L + + + LL G + ++ + + + G+ Sbjct: 251 LEQLRYERGLHRKALKVLPDATRRLLLHHWLQQQG--VRTLSASQLDTLSVAIGPGRPP 307 >gi|291298358|ref|YP_003509636.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM 44728] gi|290567578|gb|ADD40543.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM 44728] Length = 344 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 14/233 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM + I+ ++VDH L+ + V+D Sbjct: 39 VLVACSGGPDSM---ALAAATAFVAPRLGIRAGLVTVDHGLQAGSAKRAATVADWARDAG 95 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 V + + G AAR+ARYA ++E A+ + A+ ++ HT DDQ ETV + Sbjct: 96 FEPVEVATVEVDVTAGGPEGAARDARYAALTEAAQRLGASAVLLGHTRDDQAETVLLALA 155 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+ L R D + +DP NTD + Sbjct: 156 RGSGPRGLAAMPRKRRKFRRP-------LLDLPRADTVRACRDLELPVWDDPHNTDPAYA 208 Query: 201 RVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 R R+R + + + + L N+A+ + L + Sbjct: 209 RSRLRAVMPVLAETFGERFVANLARTATLVAADNDALDAYAAEVLAKASHGTL 261 >gi|171920332|ref|ZP_02931673.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902755|gb|EDT49044.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 330 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L AVSGG DSM +L I+ V++ RE++ + + V D Sbjct: 12 ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 62 Query: 77 CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 C + + ++ + AR RY E K N + AH FDD Sbjct: 63 CKKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 122 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET YM+ R G+ + + RP L R++ ++ + + I + D Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 178 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 +N D +ER RVR+ + L+ +Y KKF K +++ A I + + Sbjct: 179 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 236 Query: 252 ISQDILNIDSTLLFYLL 268 + D + +YL+ Sbjct: 237 KYDYFIRQDDMVQYYLI 253 >gi|254252011|ref|ZP_04945329.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158] gi|124894620|gb|EAY68500.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158] Length = 468 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 143/403 (35%), Gaps = 31/403 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALADMPSDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCIALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + +RL +A + + G+ A+ARE+RYA + + A + Sbjct: 69 ANAWAAHAQATATRLGVAFESMRVDVPRDSGLGIEASARESRYAALDAMCEAHGAAALWI 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ ++ RP LR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPGGASVERVRPLLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241 +++W +D SN D R+ R +R V L L + F+D + A L+ Sbjct: 188 DLAWIDDESNGDTRYARNALRIDV----LPTLAVHFPGFRDALGRAAQHAAAAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294 + L+ D+ + F LLR G S +M R + Sbjct: 244 AELDFAGAARDDGRALSRDALIAFDDVRGANLLRFWMRRLGLPGASAARLANMMRQLRDA 303 Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348 V + + ++ + T + P+ WDG+ + Sbjct: 304 HDAHALRVDHAGQCLRLYRDAIYWEAGDSTEPADDDTGMARPDAVLAWDGQQVWHLPAWR 363 Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 + + + VP + + A ++ GG+ + Sbjct: 364 GTFVFAPADAGSDGAVPEA----LLRSARLVARARAGGERMRT 402 >gi|322691770|ref|YP_004221340.1| hypothetical protein BLLJ_1581 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456626|dbj|BAJ67248.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 388 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 15/239 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 LGPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM +RP L R + + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 + + R RVR + + + ++ + + M +A Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVA 278 >gi|159030184|emb|CAO91076.1| tilS [Microcystis aeruginosa PCC 7806] Length = 324 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 124/312 (39%), Gaps = 19/312 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A +LVA+S G L +L RS + + DH + V +V Sbjct: 22 LPKNASLLVALSAGQ---DSLCLSQLLLDLRSRWGWQLAIAHCDHRWSQDRGL-VDHVRK 77 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + ++ + + P A AR+ RY + A+ ++TAHT D+ ET Sbjct: 78 IAEIWQLPVYI---ATAPPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETF 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R G LS + ++++ RP L R + +F R + D +N Sbjct: 135 LYNLTRGAGSDG--LSALTWLTSLTPDIFLVRPLLNVTRGETFAFCQSRELPIWYDRANE 192 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 + R+ R R+R+ + L +++K ++ A + + R +I + Q Sbjct: 193 NLRYARNRIRQELLPYLQTNLNPQIEKHLAQTAEILEAESDYLDSIARNIFRQVIDLDQQ 252 Query: 256 ILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-GRV 307 L+ + + ++R+ A S P + +E V+ + + S+ G++ Sbjct: 253 RLDRSPLQILPLAIQRRVIRLFLAQY--LPSSPNFAEVESVVNLITGVNRDATSSLTGKI 310 Query: 308 VIDRRANFLWIT 319 ++ + N+L+I+ Sbjct: 311 RVEVQQNWLYIS 322 >gi|23466228|ref|NP_696831.1| hypothetical protein BL1680 [Bifidobacterium longum NCC2705] gi|61216664|sp|Q8G3S4|TILS_BIFLO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23326973|gb|AAN25467.1| narrowly conserved hypothetical protein similar to MesJ [Bifidobacterium longum NCC2705] Length = 388 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 16/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DSM L H V + ++ A+ VDH L+ ++ +D C L Sbjct: 46 VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102 Query: 82 IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + ++ GL AAAR+ARY + A A ++ AHT DDQ ETV + Sbjct: 103 LGPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R L+GM +RP L R + + + +DP+N D Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219 Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 + + R RVR + I+ A + + F + L + V ++ A Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVAA 279 Query: 252 ISQ 254 + + Sbjct: 280 VDR 282 >gi|238027917|ref|YP_002912148.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1] gi|237877111|gb|ACR29444.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1] Length = 479 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 121/325 (37%), Gaps = 26/325 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++VR + +L A I +A SGG DS LL + R G + A+ V H L Sbjct: 14 LDAVRGALDALPEAATIAIAYSGGLDSSVLLD-----AAVRVAGAARCVALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124 A + + + + L + + + G+ A+ARE RY + + A + Sbjct: 69 ADAWLAHAAACAAALGVCFDAQRVEVPRESGLGVEASARELRYRALDALGERHGAQALWI 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + RP L R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGIAAMA-PRYLPDGATIVRMRPLLSLLRAQLERYAEAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237 + W +D SN D R+ R +R V L L + F+D + +L Sbjct: 188 ALRWIDDESNADTRYARNALRARV----LPELAVHFPGFRDALARTAQHAAAAQRLLDVL 243 Query: 238 IPKYLTVHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L R + + +L D LLR G LPG S R+ +K Sbjct: 244 AADDLAGATRDDGRVLSRERLLGFDDERGANLLRHWMRTLG----LPG-ASAARLAEMIK 298 Query: 296 SGKRGCVSIGRVVIDRRANFLWITR 320 + VS + ID L + R Sbjct: 299 QLRAAQVS-HALRIDHAGQCLRLYR 322 >gi|213027211|ref|ZP_03341658.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 172 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL A SGG DS LL L + AI + H L A VR+ VC R Sbjct: 14 RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 ++ V + G+ A AREARY ++ + ++ TA DDQ ET + Sbjct: 72 WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 +R G+ G + RP LR R+ + + ++ Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHG 172 >gi|116748705|ref|YP_845392.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB] gi|116697769|gb|ABK16957.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB] Length = 470 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 103/298 (34%), Gaps = 22/298 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76 H+LVAVSGG DS+ LL L + G + S + +H LR + + +V V Sbjct: 21 RGDHVLVAVSGGPDSIALLHLLAHQRESLAIG--RISVLHFNHRLRGAESDADCVFVRSV 78 Query: 77 CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ + V + AARE R+ +A I HT +DQ Sbjct: 79 AEKMGLPVVCGEEDVRRYRQGRTISMEMAARERRHRFFRRSLDQYSAQRIALGHTSNDQA 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E V +R R G+G SGM + RP L R +I +L I + ED Sbjct: 139 EEVLLRLLR-----GVGPSGMEGMRPLGPGG-VIRPLLFAGRAEILEYLHDLKIPFREDS 192 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-------- 244 SN + R +R V + + ++ + ++ + Sbjct: 193 SNLEPVCRRNVLRLQVLPLLEKHFHPRLVRTLSRHARLVAEEESWWSDRMRAMWPEICPS 252 Query: 245 HMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + ++ L + L + R + G + + + + G Sbjct: 253 ETSGRVELDREALRTLHPALQRRVFRHAVERFQGHLMGISTAHVLALCRLAATDASGK 310 >gi|315638363|ref|ZP_07893542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter upsaliensis JV21] gi|315481574|gb|EFU72199.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter upsaliensis JV21] Length = 322 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 92/251 (36%), Gaps = 16/251 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F++ L L+A S GSDS L L I F +++ R+ + E Sbjct: 6 FLQHL-RGRKNLLAFSYGSDSTALFYLL-------ERENIIFDMALINYKTRQNSDLEEE 57 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + R + + + + AR+ RYA + ++ AH +D Sbjct: 58 EARLLAKRFH--KQIFTQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDL 115 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E M+ + M L GM N + RP L + I +FL + + + D Sbjct: 116 FEWFLMQLSKGAGA--MELLGMSA-FEKRENYTLIRPLLNVTKGQILAFLRENKLKYFND 172 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNN--AVAMLIPKYLTVHMRS 248 SN D +F+R +R D L ++K F LR + N + + S Sbjct: 173 ESNKDLKFKRNFIREHFSDEFLRHFSKGVQKSFSFLREDLKNLGEIEEFEGILICAKNAS 232 Query: 249 IIAISQDILNI 259 +IA + L I Sbjct: 233 LIAKACKKLGI 243 >gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae] gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae] Length = 286 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 17/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL + S SD +V++ +R + + V C Sbjct: 2 ILLGVSGGPDSMYLLDLISSQRSD-------IVVATVNYNVRHDSAYDAEIVRKFCEDKD 54 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + ARE R++ + + N + AH DD LE+ +M+ + Sbjct: 55 IIFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDDFLESYFMQKE 114 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+ T Y + + RP + + +I L + I + D +N + Sbjct: 115 SKRQPDFFGI----KTENYIYGMKVVRPLVDKVFKNEILEALHNKKIKYANDYTNDLPIY 170 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILN 258 R R+R +++ + K K F D++ + N + L SQD LN Sbjct: 171 TRNRIRIWLKSLSNS---QKSKIFDDIQKENNELAVLAQDTVLEYEHWKKAQFSQDEFLN 227 Query: 259 IDS 261 + + Sbjct: 228 LSN 230 >gi|254432047|ref|ZP_05045750.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001] gi|197626500|gb|EDY39059.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001] Length = 359 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 16/274 (5%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +LVAVSGG DSM L+ L + R DH R + D+ R + Sbjct: 32 LPAGESLLVAVSGGQDSMALVALLRDL---RRLHGWTLHLWHGDHGWRPASGDQARQLQA 88 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + S+ W+ A+AR RYA + A + AT ++T HT D+ ET Sbjct: 89 WAEAEGLPFSLARWEQPVQD---EASARSWRYASLLARATALGATRVVTGHTASDRAETF 145 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R +G+G + + ++RP L R D + D N+ Sbjct: 146 LFNLARGSHRRGLGS--LRPLRPLGGTVMLARPLLGFGRADTARLCGALQLPVWPDAGNS 203 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D RF R R+R V + L AL+ ++ + + + Sbjct: 204 DPRFSRNRLRGEVLPV-LEALHPGAERRLAALAAGLAEEEEAQTELGDLALSG------- 255 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 +L + + + A ++ L + ++R Sbjct: 256 LLGLPPAIDQSRAGRATARLPDRLPLAALQRLQR 289 >gi|148378008|ref|YP_001256884.1| hypothetical protein MAG_7460 [Mycoplasma agalactiae PG2] gi|148292054|emb|CAL59446.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2] Length = 286 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 17/243 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ +SGG DSM LL + S SD +V++ +R+ + +V V C Sbjct: 2 ILLGISGGPDSMYLLDLISSQRSD-------IVVATVNYNVRQDSAYDVEIVRKFCEDKG 54 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + ARE R+A + + N + AH DD LE+ +M+ + Sbjct: 55 IIFECLEIDQKACFKGNFEKWAREQRFAFFKKIYEKYNCEALYLAHHKDDFLESYFMQKE 114 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199 G+ T Y + + RP + + +I L + I + D +N + Sbjct: 115 SKRQPDFFGI----KTENYIYGMKVVRPLVGKVFKNEILEALHNKKIKYANDYTNDLPIY 170 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILN 258 R R+R +++ + K K F D++ + N + L SQD LN Sbjct: 171 TRNRIRIWLKSLSNS---QKSKIFDDVQKENNELAELEKETVLEYEQWKKTQFSQDEFLN 227 Query: 259 IDS 261 +++ Sbjct: 228 LNN 230 >gi|220911090|ref|YP_002486399.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6] gi|219857968|gb|ACL38310.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6] Length = 351 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 119/313 (38%), Gaps = 16/313 (5%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDE 69 + YPAH+LVA SGG DSM L S + A+ VDH L+E + Sbjct: 5 ALAQAGYPAHVLVACSGGPDSMALAAVASYFARRGSIDSHPVTVGAVVVDHQLQEGSGRV 64 Query: 70 VRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + L + V + + G AAAREAR+A + A A I+ HT Sbjct: 65 AADTAGALRELGLAPVDVHTVTVAGAGMGPEAAAREARHAALEAAAADQGAGAILLGHTL 124 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ E V + R + L+GM T + + RPFL RR D + Sbjct: 125 DDQAEQVLLGLARGSGTR--SLAGMRPTRAGAGSAVLLRPFLGLRRADTEEICEVEELDP 182 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY------- 241 DP+NTD F R R R V L + + + A + Sbjct: 183 WHDPTNTDPAFARSRTRVEVLPHLEEKLGPGVAESLARTASILQLDADYLEDVAESTYTS 242 Query: 242 LTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKR 299 L ++ +D L + + F ++ +AA GGQ P YR + L + G Sbjct: 243 LVQWNGGEASLPEDALRDLAPAIRFRVIAKAAAGVGGQQ--PSYRRLVAAEALLRRQGSA 300 Query: 300 GCVSIGRVVIDRR 312 G V + V R Sbjct: 301 GPVQLPGGVAAYR 313 >gi|71893557|ref|YP_279003.1| hypothetical protein MHJ_0201 [Mycoplasma hyopneumoniae J] Length = 286 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 14/187 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + VSGGSDSM LL + +++ LR A E VS C + + Sbjct: 2 IGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLE 52 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 ++S+ + K + L + R RY + K N T ++ H DD LETV+++ ++ Sbjct: 53 LKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKK 112 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ + N+ I RPFL R ++ I Q+ I + +D SN +++R Sbjct: 113 IVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGKYQRN 168 Query: 203 RVRRFVR 209 ++R + Sbjct: 169 QIRFLLE 175 >gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 334 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 10/232 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR +R L LVA SGG+DS+ L A+ A++VDH L+E + Sbjct: 14 AVRRVLRDLPDDTTALVACSGGADSLALAGAVAFEAPRVGR---TAGAVTVDHGLQEGSD 70 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V+ V + L + +V G A+AR ARY + +++ HT Sbjct: 71 RRAEDVAKVLAGLGLDPVLVRTVRVTGPGGPEASARRARYEALDGAVAERAPAVVLLGHT 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + L+GM + + RP L R +R + + Sbjct: 131 LDDQAETVLLGLARGSGAR--SLAGMAPRVGHR-----LRPLLDLDRATVREACARMGLD 183 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 EDP N D RF R RVR AL + + A A + Sbjct: 184 AWEDPHNLDPRFARSRVRHEALPALERALGPGIAAALARTAGMLRADADTLD 235 >gi|121602616|ref|YP_988505.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583] gi|120614793|gb|ABM45394.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583] Length = 660 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 5/214 (2%) Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207 GL+ + L + + RP L +R+ +R++L + SW +DP+N D +FERVRVR Sbjct: 362 RGLACIPREALLRGKVRLIRPLLGVKRKILRAYLSLQGTSWIDDPTNEDRKFERVRVRHS 421 Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLF 265 + L + K+ R K +A LI + R I L ++ F Sbjct: 422 LHQQKLADIAKKVNHAAVQRRKQAQDIADLILALDICVEYGRCFIRKPAPFLQQHASFPF 481 Query: 266 YLLRVSAAICGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323 + + G LP + ++ R + L+ ++ ++ VI+ + R R Sbjct: 482 VVGLFVVLMGGNPYLLPSRKVAALGRKLS-LQHPEKQRFTLAGSVIEYNHKGIVCWREAR 540 Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 N+ IL+P ++ +WDGRYQ N D I++GP Sbjct: 541 NIKEEILFPGQSLLWDGRYQITNHDDEAIRVGPA 574 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 54/92 (58%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109 + ++VDH LR + E V+ +C I H +V W+ KP+T + AR ARY L Sbjct: 128 PPEIIVVTVDHQLRAESALEAENVAALCRAYHIKHVIVRWEGEKPKTNIAQQARIARYDL 187 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + A+ ATLIMT HT +DQ+ET +MR QR Sbjct: 188 LFKEAEKQGATLIMTGHTLNDQVETYHMRRQR 219 Score = 46.1 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK 50 MF+ ++V F +++AVSGGSDS+ LL L S Sbjct: 1 MFVELAKNV-FKESDFAQCQKLILAVSGGSDSLALLFLLRDYFKTWSAAD 49 >gi|163857761|ref|YP_001632059.1| cell cycle protein MesJ [Bordetella petrii DSM 12804] gi|163261489|emb|CAP43791.1| cell cycle protein MesJ [Bordetella petrii] Length = 367 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 33/325 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VAVSGG+DS +L A + L+ R I V H L+ A D +V + L Sbjct: 55 RLAVAVSGGADS-AMLAAHAAPLARR--LGIDLLIFHVHHGLQAAADDWAAHVQALGRIL 111 Query: 81 RIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +++ H+ + + G+ AAAR+ARYA +++ A+ A I+ AH DQ ETV +R Sbjct: 112 QVSVHTSRAQVRADSGLGIEAAARDARYAALADLARQHEAGHILLAHHQGDQAETVLLRL 171 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR----SFLLQRNISWCEDPSNT 195 R +GM + L RP+L R DI +F Q +DP+N Sbjct: 172 LRGAGVQGMAAM---APSMPRDGLLYLRPWLNQGRADILRAAQAFAAQHGWQPVQDPTNA 228 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 D R+ R VR + + L + +Q +A V + A+ Sbjct: 229 DPRYTRAAVRELLTPV----LDARWPGWQARLADHARHMADAAGILAEVARADLAALQPS 284 Query: 256 I----------LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS------GKR 299 + + +LR + G +P + ++ L+ ++ Sbjct: 285 ADLASFALAPWRELSAARQAQVLRYWLHLHG--ARMPTEARLADLLRQLRQLHSLGHDRQ 342 Query: 300 GCVSIGRVVIDRRANFLWITRAVRN 324 V+ R VI +WI ++ Sbjct: 343 MRVTHARHVIRCHRGRVWIEPRGQD 367 >gi|297243772|ref|ZP_06927702.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD] gi|296888193|gb|EFH26935.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD] Length = 372 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 113/295 (38%), Gaps = 32/295 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L V + R I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I + S G +AAR+ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARKARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLTREDTTGICEDLGISWWDDPTNGDDI 218 Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R RVR + + + F V + + A + L Sbjct: 219 SQNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + S ++ D L+ P R R+++ S S Sbjct: 272 VDEASSQVMEFDKNAKTVRLKADKL----AQYHPSIRR--RIIVRALSELGLRFS 320 >gi|313678897|ref|YP_004056637.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45] gi|312950653|gb|ADR25248.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45] Length = 286 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 13/225 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+ VSGG DSM LL L+S D +V++ +RE + +V V C Sbjct: 2 ILLGVSGGPDSMYLLDLLYSKRKD-------IVVATVNYNVRENSSYDVEVVRKYCQEKE 54 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + + + AR R+ + + N + AH DD +E+ +M+ + Sbjct: 55 IIFEHLEIDKNACFKGNFEQWARNIRFDFFKKLYEKYNCEALYLAHQKDDFIESYFMQKE 114 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199 + G+ + + + RP + + +I +L + I + D +N + Sbjct: 115 SNRKPDFFGIRAQNEIF----GMNVLRPLVNKVFKSEILDYLHKNKIDYAYDYTNDLTIY 170 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 R ++R ++++ + + L + ++ +Y+ Sbjct: 171 TRNKIRDRLKNLSNKEKSKIIDEINKLNQNLQMTENEVLSEYIEW 215 >gi|298252658|ref|ZP_06976452.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1] gi|297533022|gb|EFH71906.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1] Length = 372 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 112/295 (37%), Gaps = 32/295 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L V + R I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I + S G +AAR ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDDI 218 Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R RVR + + + F V + + A + L Sbjct: 219 SKNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + S ++ D L+ P R R+++ S S Sbjct: 272 VDEASSQVMEFDKNAKTVRLKAEKL----AQYHPSIRK--RIIVRALSELGLRFS 320 >gi|72080544|ref|YP_287602.1| hypothetical protein MHP7448_0205 [Mycoplasma hyopneumoniae 7448] Length = 286 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 14/187 (7%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + VSGGSDSM LL + +++ LR A E VS C + + Sbjct: 2 IGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLE 52 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 ++S+ + K + L + R RY + K N T ++ H DD LETV+++ ++ Sbjct: 53 LKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKK 112 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+ + N+ I RPFL R ++ I Q+ I + +D SN +++R Sbjct: 113 IVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKRIPYLDDQSNFTGKYQRN 168 Query: 203 RVRRFVR 209 ++R + Sbjct: 169 QIRFLLE 175 >gi|283783579|ref|YP_003374333.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05] gi|283441060|gb|ADB13526.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05] Length = 372 Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats. Identities = 71/295 (24%), Positives = 112/295 (37%), Gaps = 32/295 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L+A SGG DS+ L V + R I+ + VDH L+ + + + C + Sbjct: 45 VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101 Query: 82 IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I + S G +AAR ARY I E AK A ++ AHT +DQ ETV M Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 + + ++GM + N+ +RP ++ RED ISW +DP+N DD Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDDI 218 Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + R RVR + + + F V + + A + L Sbjct: 219 SKNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 + S ++ D L+ P R R+++ S S Sbjct: 272 VDEASSQVMEFDKNAKTVRLKAEKL----AQYHPSIRK--RIIVRALSELGLRFS 320 >gi|33864611|ref|NP_896170.1| MesJ-like protein [Synechococcus sp. WH 8102] gi|33632134|emb|CAE06590.1| possible MesJ homolog [Synechococcus sp. WH 8102] Length = 349 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 13/281 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 AVSGG DSM LL+ L + + DH + + C + + Sbjct: 50 AVSGGQDSMALLVLLQELQ---RLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 106 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V + + T A+AR RY+ + + A+ + A ++ T HT D+ ET+ ++ R Sbjct: 107 QVD--QAPQGSTASEASARHWRYSQLQQRAEELGADVV-TGHTASDRAETLLLQLARGTD 163 Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+G + D + RP L R D + + DPSN F R Sbjct: 164 LAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFARN 223 Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R+R V + +M + ++ + L L S + + + Sbjct: 224 RIRAEVLPVLEQLHPGCSQRMANLAERTSQLRDTQQELSQLALQPLRTSTGLDRRRLGAL 283 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + LL + A G ++ +E++ L G Sbjct: 284 QPSTRRQLLVIWLAQQG--VTALNAALLEQLTDRLALSAAG 322 >gi|157736476|ref|YP_001489159.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018] gi|157698330|gb|ABV66490.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018] Length = 326 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 15/210 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S + + L+A S G DS L L I F V++ +R +KDEV Y Sbjct: 6 SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ S+ + K + AR+ RY E + +++TAH +D+LE Sbjct: 59 ELASKYNKQIYIKDIKLES-TSNFEKMARDIRYKFFEEIIDENSYEVLITAHQLNDKLEW 117 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 M+ KG GL + ++ N + +P L ++++ +FL Q NI + D Sbjct: 118 FLMQF-----TKGAGLVELIGFNEFEQKENYKVYKPLLEITKKELENFLKQENIKYFIDN 172 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 SN D++++R R D L +KK Sbjct: 173 SNFDEKYKRNYFRHNFSDKLLSEYTNGIKK 202 >gi|254411176|ref|ZP_05024953.1| PP-loop family [Microcoleus chthonoplastes PCC 7420] gi|196181677|gb|EDX76664.1| PP-loop family [Microcoleus chthonoplastes PCC 7420] Length = 336 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 114/304 (37%), Gaps = 25/304 (8%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R L+ P+ +LVAVSGG DS+ + +L + K + + DH K + Sbjct: 21 RQLLAPSRPVLVAVSGGQDSL---CLMKLLLDLQPKWKWQLAIAHCDHRW-PADKGLADH 76 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + V I + T AAR+ RY + + A+T ++TAHT D+ Sbjct: 77 IEQVAQSWAIPFYLEIADQV---TTSEGAARQWRYQALGKIAQTYQYQYVVTAHTQSDRA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV R G L + + + RP L R + F+ Q+++ D Sbjct: 134 ETVLYNLIRGTGVDG--LQSLTWQRPLVAGVQLVRPLLEVTRRETGEFVEQQHLPVWLDA 191 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 N D R+ R R+R+ V +++ + V L ++ +++ + Sbjct: 192 YNQDLRYARNRIRQEVLPYLKTHFNPRVETALGHTAELLRADVEYLETAARSLREQAMGS 251 Query: 252 ISQD------------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 +S++ + D L +R I Q + +E + +++ R Sbjct: 252 MSENEPTTTLKLNRLILRQADLALQRRAIRQFLTIV--QPKATNFEQIEAITALIEAPNR 309 Query: 300 GCVS 303 S Sbjct: 310 SRTS 313 >gi|255323491|ref|ZP_05364622.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277] gi|255299528|gb|EET78814.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277] Length = 328 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 12/206 (5%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A S G DS L L +KF VD+ +R +KDEV D+ Sbjct: 10 LKSGRNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEVASARDL 62 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 ++ V S + ++ AR ARY + + ++ AH FDD+ E Sbjct: 63 AAKFNKQIYVKSVRLG--ESNFEHEARAARYEFFGQICREQGYENLILAHQFDDKFEWFL 120 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R L GM + + + I+RP L R+ ++ FL +RN+ + D +N Sbjct: 121 MQLGRGAGLSE--LLGMQELETRE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLT 177 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK 222 D+F+R VR + L+ + +KK Sbjct: 178 DQFKRGFVRAKFSEPFLNEYFGGVKK 203 >gi|116668717|ref|YP_829650.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24] gi|116608826|gb|ABK01550.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24] Length = 376 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 74/290 (25%), Positives = 111/290 (38%), Gaps = 22/290 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVS 74 YP +LVA SGG DS+ L A+ S R + A+ VDH L+ + + Sbjct: 34 YPERVLVACSGGPDSLALA-AVASYFGRRGHVDGHPVSVGAVVVDHQLQPGSAAVAAQTA 92 Query: 75 DVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 DV L + V + G AAAR+AR+A + E A A +I+ HT DDQ E Sbjct: 93 DVLRDLGLSPVDVRQVDVASTGIGPEAAARDARHAALEEAAAQAGANVILLGHTLDDQAE 152 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V + R + + + + RPFL RR D + DPS Sbjct: 153 QVLLGLARGSGTRSLAGM-------RPVRGLLLRPFLGLRRADTLEICAVEGLDPWRDPS 205 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK-------YLTVHM 246 N D F R R R V + L + + + A + L Sbjct: 206 NADPSFARSRTRVEVLPMLEDKLGPGVAESLARTAAILQLDADYLDDVANSTYEQLAEQS 265 Query: 247 RSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 I++ + L + + F ++ +AA GGQ P Y+ + L+ Sbjct: 266 GGEISLPEAALGELAPAIRFRVIAKAAAAVGGQQ--PSYQRLLAAEALLR 313 >gi|320353156|ref|YP_004194495.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032] gi|320121658|gb|ADW17204.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032] Length = 345 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 132/341 (38%), Gaps = 40/341 (11%) Query: 2 FLSPIE-SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 L P+E ++R +R ILV VSGG+DS+ LH + + R + A Sbjct: 1 MLHPLEQTIRQTLRRESLAGAGDRILVGVSGGADSL---ALLHLLAALRGEISLTLIAAY 57 Query: 58 VDHCLRETA--KDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALIS 111 VDH LR + V + + L I A + V + ++ + L AAREARY + Sbjct: 58 VDHGLRPKETPAEWAC-VQEAAAVLGINSVRAVADVHGRAARQKLSLEHAAREARYQALG 116 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A L+ AHT DDQ E + +R R K + M + RP L Sbjct: 117 ALIRQQGANLLAVAHTADDQAEEILLRLFRGGGRKALSGMRMRA-------GHLIRPLLA 169 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKF 223 R+ + ++L + I +C D SN D RF R R+R AL Sbjct: 170 TRKAMLLAYLRDQGIGYCHDSSNDDRRFLRNRIRLDLLPLLELDYDPGIRQALLKTAANL 229 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGG 277 ++ + +A +T+ A L+ + L L+ G Sbjct: 230 REDEDLLEQLLAARWEAVVTIEQAVEAACPIARLDRSPFRGLHPALQRRLVERLLWTLG- 288 Query: 278 QISLPGYRSMERVMLFLKSGKRGC-VSIG-RVVIDRRANFL 316 ++ Y + V+ + G+ G + +G + + R + L Sbjct: 289 --AVARYDHILAVLEAARHGRTGSELHLGQGLRVRVRRDSL 327 >gi|294338861|emb|CAZ87195.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS [Thiomonas sp. 3As] Length = 350 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 137/322 (42%), Gaps = 16/322 (4%) Query: 5 PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + ++R F I +A SGG+DS LL+A ++ +G + A+ V+H Sbjct: 27 ALAALRRFASQNPGVAQAERIGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHG 81 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINAT 120 L+ +A+ ++ + C+ L +A++ + + L AREARY +++ A+ N Sbjct: 82 LQTSAQLFAQHCAQACAALDVAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCA 141 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ A DDQ+ET+ + R +G+ + +RP L C ++RS+ Sbjct: 142 VVLLAQHGDDQVETLLLALLRGAGPRGLAAM---PAQMQRHGCSFARPLLDCGAAELRSW 198 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAML 237 L + +S+ +DP N D F R R+R + + A + + L + + Sbjct: 199 LKAQAVSFLDDPMNADPAFRRSRIRHELVPVLARLEPAYRQTLGRSAALCAAADAQIQST 258 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKS 296 + L + M+ + + + +LR+ G ++ + R V+ + Sbjct: 259 AAQQLRLCMQPQGLDLAALRALGAVSASEVLRLWLRQNGQRLDRARTDELVRQVLRTGQG 318 Query: 297 GKRGCVSIGRVVIDRRANFLWI 318 R + + ++ R+ L + Sbjct: 319 AHRLELRLPGCILQRQGACLRL 340 >gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801 [Streptomyces scabiei 87.22] gi|260647954|emb|CBG71059.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 388 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 118/305 (38%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ I+VDH L+ + V L Sbjct: 89 VLVACSGGADSMALASALAFEAPKLG---VRAGGITVDHGLQPGSDLRAEEVVLRLRELG 145 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + + A ++ HT DDQ ETV + R Sbjct: 146 LDPAESVAVTVGRDGGPEAAARDARYAALDAALERHGAAAVLLGHTRDDQAETVLLGLAR 205 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + RPFL+ R+ R + +++ +DP NTD + R Sbjct: 206 GSGIR--SLSGMAAVS--GADGRYRRPFLQLDRQTARKACMVQSLPVWDDPHNTDPAYTR 261 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-----VHMRSIIAISQDI 256 R+R AL + + +++ A + + V + + + Sbjct: 262 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEPGVRDAAGLLECAKL 321 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314 + + +LR A G R +E V + G+ GRVV R+ Sbjct: 322 YALPPAVRRRILRRVAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVAQRQGG 381 Query: 315 FLWIT 319 L I Sbjct: 382 RLVIR 386 >gi|255326128|ref|ZP_05367215.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296] gi|255296839|gb|EET76169.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296] Length = 377 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 26/293 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS L G ++ AI VDH L+E + + + L Sbjct: 53 LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTELG 109 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + G AAR ARYA ++ + A ++ HT DDQ ETV + Sbjct: 110 LHPVIIEKVQVPVGNMGPEMAARTARYAAFTKAVEATGARAVLLGHTLDDQAETVLLGLS 169 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + L+GM + + + RPFL RR D+ ++ DP+NTD+ Sbjct: 170 RGSGTR--SLAGMPPVRV-EGGVTYLRPFLGLRRTDMLDICDAETLTPWIDPTNTDETLM 226 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSI 249 R R+R V L + + V A + + +R I Sbjct: 227 RARIRHSVLPYLEEHLGGDVARSLARTAAVAGPDAEYLDEQAHAAYEQALLPAGTAVRGI 286 Query: 250 IAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 +L+ + L +L + GG+ PG+ ++ + F Sbjct: 287 EREDAVLLDRAQVAALHPALRLRVLATACKAAGGEN--PGFERLQALDSFTAE 337 >gi|194246666|ref|YP_002004305.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali] gi|193807023|emb|CAP18459.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali] Length = 415 Score = 159 bits (403), Expect = 8e-37, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +++VSGG DSM LL L I+ + + +H R+ + + V + C + I Sbjct: 16 IISVSGGVDSMVLLNVLF-------HKNIRLAVVHFNHLKRKESFKDKILVENYCLKNNI 68 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ +R R + A I+TAH DD E ++M+ R Sbjct: 69 PFF--YFEIKPLSNNFQNESRLLRQKNLQSVALLYRTYYIITAHHLDDLAENIFMKISRG 126 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + +G SG + + +PFL +++I ++ + NI + +D +NT D ++R Sbjct: 127 SSL--LGYSGGMQVKQKISDFYFLKPFLYVNKKEILNYAKKNNIHYLDDITNTLDIYKRN 184 Query: 203 RVRRFVRDIDLHAL----YLKMKKFQ 224 +R + + ++K+ FQ Sbjct: 185 EIRNQIIPWFKKDINFLKHIKIYHFQ 210 >gi|257459329|ref|ZP_05624442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter gracilis RM3268] gi|257443258|gb|EEV18388.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Campylobacter gracilis RM3268] Length = 333 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 120/305 (39%), Gaps = 26/305 (8%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 +L+ L+A S G DS L L +KF VD+ +R +KDEV Sbjct: 13 ALLRAGKNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEVASAR 65 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + V S + + AR ARY +E + ++ AH FDD+ E Sbjct: 66 YLAVKFNKQIYVKSVRLGA--SNFEHEARAARYDFFAEICRERGYENLILAHQFDDKFEW 123 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ R L GM + + + I+RP L R+ ++ FL +RN+ + D +N Sbjct: 124 FLMQLGRGAGLSE--LLGMQE-LEASEDYVIARPLLGVRKCELERFLRERNLKYFTDETN 180 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 DRF+R +R + L+ + +KK + A+ + ++ I + + Sbjct: 181 LTDRFKRGFIRAKFSEPFLNECFGGVKK----SFEFLATDALSLTPEISNPAPKIYLVKR 236 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 LR + C + L++G CV G+V + N Sbjct: 237 GT---------SELRGVSLTCKRLGLVLSSAQRNECARCLENGAD-CVLGGKVAVGAGEN 286 Query: 315 FLWIT 319 F+++T Sbjct: 287 FIFVT 291 >gi|223038944|ref|ZP_03609236.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter rectus RM3267] gi|222879917|gb|EEF15006.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter rectus RM3267] Length = 332 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 117/311 (37%), Gaps = 26/311 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A S G DS L L +KF VD+ +R +KDE+ + Sbjct: 14 LKSGQNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEITSARQL 66 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V S + AR ARY SE + ++ AH FDD+ E Sbjct: 67 ALKFNKQIYVKSVCLGA--SNFEHEARAARYEFFSEICREHGYENLILAHQFDDKFEWFL 124 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R L GM + + + I+RP L R+ ++ FL +RN+ + D +N Sbjct: 125 MQLGRGAGLSE--LLGMQE-LEAREDYVIARPLLGVRKCELERFLRERNLKYFTDETNLT 181 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +RF+R +R + L + +KK + A A+ + ++ I + + Sbjct: 182 ERFKRGFIRAKFSEPFLDEYFSGVKK----SFEFLAADALNLTPEISNPAAKIYLVKRGP 237 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 LR C + + L++G CV G+V + F+ Sbjct: 238 ---------SELRGVDQACKRLGLVLSSAQRNECVRCLENGAD-CVLGGKVAVGAGEKFI 287 Query: 317 WITRAVRNLPT 327 ++T + Sbjct: 288 FVTPYAKPAME 298 >gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] Length = 556 Score = 159 bits (402), Expect = 8e-37, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 102/271 (37%), Gaps = 18/271 (6%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 R +R +LVAVSGG DS+ AL +L + +DH LR A + Sbjct: 9 RALLRLAPEARRLLVAVSGGGDSV----ALLRLLLALPEPRWGLEVAHLDHALRPDAAEA 64 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTA 125 +V +C +A ++ L AAR RY ++ AK + A ++TA Sbjct: 65 AAFVRALCWEHGVACHTARVDVARIAKDRGWNLEDAARRLRYGFLTRTAKRVGADAVVTA 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV M+ R A L GM + RP L R +R++L Sbjct: 125 HTQDDQAETVLMQLLRGAAH----LQGMPA-----RQGRVLRPLLEVPRSALRAYLRALG 175 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 EDP+N D R VR + L A +K + A + Sbjct: 176 QDCLEDPTNADTSRTRAWVRHVLLP-TLAARAPHVKATLARHAALQRDQAAHFRRLAQGL 234 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 ++ A + +L D + + G Sbjct: 235 IKDAGAEVRALLAQDVAVQRAAVAELLRCAG 265 >gi|296134924|ref|YP_003642166.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12] gi|295795046|gb|ADG29836.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12] Length = 350 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 137/322 (42%), Gaps = 16/322 (4%) Query: 5 PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + ++R F I +A SGG+DS LL+A ++ +G + A+ V+H Sbjct: 27 ALAALRRFASQNPGVAQAERIGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHG 81 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINAT 120 L+ +A+ ++ + C+ L +A++ + + L AREARY +++ A+ N Sbjct: 82 LQTSAQLFAQHCAQACAALDVAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCA 141 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ A DDQ+ET+ + R +G+ + +RP L C ++RS+ Sbjct: 142 VVLLAQHGDDQVETLLLALLRGAGPRGLAAM---PAQMQRHGCSFARPLLDCGAAELRSW 198 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAML 237 L + +S+ +DP N D F R R+R + + A + + L + + Sbjct: 199 LKSQAVSFLDDPMNADPAFRRSRIRHELVPVLARLEPAYRQTLGRSAALCAAADAQIQST 258 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKS 296 + L + ++ + + + +LR+ G ++ + R V+ + Sbjct: 259 AAQQLRLCLQPQGLDLAALRALGAVSASEVLRLWLRQNGQRLDRARTDELVRQVLRTGQG 318 Query: 297 GKRGCVSIGRVVIDRRANFLWI 318 R + + ++ R+ L + Sbjct: 319 AHRLELRLPGCILQRQGACLRL 340 >gi|257063279|ref|YP_003142951.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM 20476] gi|256790932|gb|ACV21602.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM 20476] Length = 361 Score = 159 bits (402), Expect = 9e-37, Method: Composition-based stats. Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 43/360 (11%) Query: 3 LSPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 ++ I+ VR + RS+V + +L+ VSGGSDS L A + + G + + V+ Sbjct: 5 MALIDRVRTLIDDRSMVRTGSPVLLMVSGGSDSTALAYAAAELRDEGRLGTVTM--LHVN 62 Query: 60 HCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYAL----IS 111 H LR A D + + + + L I + A ARE RY + Sbjct: 63 HKLRGEASDGDAAFTRRLSAHLGIPLFDCEIDVPALLANGGNMEATAREERYRAVREALE 122 Query: 112 EHAKTINATL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 L T HT DD++E+ +MR+ G+ + + I R Sbjct: 123 STCSHTGYDLEDASAFTGHTADDRVESYFMRTIVGTGPGGLRAM---SHVSWVNGCRICR 179 Query: 168 PFLRCRREDIRSF--------LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 P L C R+++R + + W ED +N D R VR + + Sbjct: 180 PLLECSRDELREYIRSRPGAIADELGNLWREDATNGDTDHFRSYVRHELVPRAMERNPQL 239 Query: 220 MKKFQDLRVKVNNAVAMLIPKY----------LTVHMRSIIAISQDILNIDSTLLFYLLR 269 + ++ + MLI + L R +S +I + ++ Sbjct: 240 LATLTRTMNQIADEDDMLIARTKDLLVRFGVPLGSSPREGFIMSPEIGMEPKAMQRRVVY 299 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT-----RAVRN 324 ++ + S+E + + + G + + + L + RA RN Sbjct: 300 RLLSLMLPPTARIESASVEACVEAIGNHGYVANIQGDIAVSFNKHGLRLEPMAAFRARRN 359 >gi|149921066|ref|ZP_01909525.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1] gi|149818070|gb|EDM77527.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1] Length = 362 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 119/320 (37%), Gaps = 24/320 (7%) Query: 9 VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 VR + +L + +LVA SGG+DS+ L L + +RS G + S VDH LR + Sbjct: 28 VRGALSALAEGSGRSLLVACSGGADSVATLGLLVLL--ERSEG-LTLSVGHVDHGLRPES 84 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 DE V + L + V + ++ GL A AR AR + A+ A I+ AH Sbjct: 85 ADEAELVRALAEGLGLPCFVERAELAR-GPGLPARARAARRGALEAMAEQAGADAIVLAH 143 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DQ ET+ M + R G+ + D RP L R R + Sbjct: 144 TATDQAETMLMHATRGAGLVGLAAMPVLD-------GPWLRPVLDLTRMQTRELAELLEL 196 Query: 187 SWCEDPSNTDDRFERVRVRRFV-RDIDL--HALYLKMKKFQDLRVKVNNAVAMLI----- 238 + +DP+N D R +R V R + + + M AV + Sbjct: 197 PFVDDPTNEDREQLRTWLRHEVLRPLRATNPRVEVLMAGLAREARDAQEAVEVWAMREVD 256 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLFLK 295 + ++ S + + + ++R + G +S R +ME+ + + Sbjct: 257 SRRTSLEPGSESWTLDEFDALPRAIRMRVMRRLCELAGADLSRLHRRTVAAMEQACVDVS 316 Query: 296 SGKRGCVSIGRVVIDRRANF 315 R R R Sbjct: 317 EATRAGRGAPRPAPRRWQLH 336 >gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] gi|258603457|gb|EEW16720.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734] Length = 351 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 118/319 (36%), Gaps = 33/319 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + V +SGG+DS+ L+ L +K A+ VDH L+E + R ++ Sbjct: 41 AGVAVGLSGGADSLALVHGLLRC-------GVKVHAVVVDHQLQEASAQVARQAAETAMS 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + + G AR+ARY + A ++ AHT DD E + + Sbjct: 94 LGASAEIRTVEVEGLGEGP---ARQARYQALGTAAA---GRPLLVAHTADDDAEGLLIGL 147 Query: 140 QRDYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 R + GM + W+ RP L C R + + ++W EDP N+ Sbjct: 148 VRGSGAEAIAGMRSVHTDHAAVDAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHNSS 207 Query: 197 DRFERVRVRRFVRDIDLHALYLK----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 D + R R+R V AL M + + + + L + L Sbjct: 208 DAYLRSRIRTRVLPYLQDALGEHIGANMARTARMLREDVELLDELARRELQAAEEGASLN 267 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-------- 304 ++ + L + + A G ++ +++ +++ K V Sbjct: 268 CTELQQQPAALRRRVFKQWLADKTGPLTSAHLNAIDALVIAWKGQGGAAVPWPQSPPTPG 327 Query: 305 -----GRVVIDRRANFLWI 318 R+V+ RR +L + Sbjct: 328 QQRRTHRLVVQRRDGYLQL 346 >gi|61217331|sp|Q7UA26|TILS_SYNPX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 337 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 13/281 (4%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 AVSGG DSM LL+ L + + DH + + C + + Sbjct: 38 AVSGGQDSMALLVLLQELQ---RLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 94 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 V + + T A+AR RY+ + + A+ + A ++ T HT D+ ET+ ++ R Sbjct: 95 QVD--QAPQGSTASEASARHWRYSQLQQRAEELGADVV-TGHTASDRAETLLLQLARGTD 151 Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 G+G + D + RP L R D + + DPSN F R Sbjct: 152 LAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFARN 211 Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R+R V + +M + ++ + L L S + + + Sbjct: 212 RIRAEVLPVLEQLHPGCSQRMANLAERTSQLRDTQQELSQLALQPLRTSTGLDRRRLGAL 271 Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + LL + A G ++ +E++ L G Sbjct: 272 QPSTRRQLLVIWLAQQG--VTALNAALLEQLTDRLALSAAG 310 >gi|158334883|ref|YP_001516055.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017] gi|158305124|gb|ABW26741.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017] Length = 338 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 116/320 (36%), Gaps = 37/320 (11%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I VR L IL+A+SGG DS LL L + + + + DH Sbjct: 14 LHHILKVRQL---LPIQQRILIALSGGQDSFCLLQLLVDLQPKWGW---QLAIAHGDHRW 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +V+ + + ++ + + + + AA R+ RY +++E A+ L+ Sbjct: 68 PLDSDANAHHVTQIARQYQLPYF---LRQATTELRSEAAGRQWRYQILTEIAEQEAYPLV 124 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 ++AHT D+ ET+ R G L + + + RP L R F Sbjct: 125 VSAHTASDRAETLLYNLIRGSGTDG--LQALSWQRPLSDRVQLVRPLLDVARAQTGDFCR 182 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------------KFQDLRV 228 RN+ +D N + + R R+R V +++ F + Sbjct: 183 HRNLPIWQDAMNQNLVYRRNRIRLEVLPHLKTHFNPQVETTLAHTAEILQGDVDFLEAET 242 Query: 229 KVNNAVAMLIPKYLTVHMRSII------AISQDILNIDSTLLFYLLRVSAAICGGQISLP 282 + A+A+ P + A+ L + L + LR + + Sbjct: 243 QKLLAIALPSPPPVLSETEQYWGYINRDALQSAPLALQRRALRHFLRQAIDVSAN----- 297 Query: 283 GYRSMERVMLFLKSGKRGCV 302 ++ +E++M +K+ Sbjct: 298 -FQQIEKLMALVKAPNHSRT 316 >gi|110597047|ref|ZP_01385336.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM 13031] gi|110341238|gb|EAT59703.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM 13031] Length = 337 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 23/248 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FLS I++ R + ILVA+SGG DSM +L ++ R ++ + + Sbjct: 8 FLSQIKARRLVEQ----GDRILVALSGGPDSMAMLSLFTAL---RPVLHLQLAVAHCNFL 60 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 LR + + +V + RL + V + S+ + L AR RY + + Sbjct: 61 LRGRESDGDEDFVREAALRLGMECFVERFDTRHHASQLKKSLEETARILRYGFFDKVLEE 120 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + TAH D ET+ R + + + N I RP L + + Sbjct: 121 QGFSKVATAHHVSDNAETILFNLFRGASLPAL-------KGIRARNDRIIRPMLLLHKAE 173 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNN 232 I+ +L ++ I+ D SN+ D ++R +R V + H L +++ + ++ Sbjct: 174 IKGYLKEKGIASRIDSSNSSDDYDRNFIRNRVIPLIEERFAHKLMPSLQRVSEQAGELEE 233 Query: 233 AVAMLIPK 240 + + Sbjct: 234 FLELYFEN 241 >gi|317153245|ref|YP_004121293.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316943496|gb|ADU62547.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 336 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 61/287 (21%), Positives = 100/287 (34%), Gaps = 18/287 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS LL+ LH + + A ++H LR A D+ R+ + +C L Sbjct: 43 LAVGLSGGADSTALLLCLHWLAVKNGG---RVVAAHLNHRLRPEADDDARWAASLCESLG 99 Query: 82 IAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + V+ + GL A REARY L ++ A I H Sbjct: 100 VPCVAREADVAALAASRGMGLEEAGREARYTLFADVLAQHEAHFIALGHHL-----DDLG 154 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 +G G+ + D + RP L + + L +SW ED +N+D Sbjct: 155 EDLLLRLSRGTAWPGLSGMVGRDDGRRLLRPLLLTPKSTLTGLLTALGVSWREDATNSDP 214 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-VAMLIPKYLTVHMRSIIAISQDI 256 R+ R R+R V + L + F D ++ A + + Sbjct: 215 RWARNRIRSTVMPL----LLQENPNFLDAVARLWRVGSADRDYWDAQTATAGTTLLDATL 270 Query: 257 LNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCV 302 L L + + G GQ ++R + G Sbjct: 271 AGAHRALRLRLYKAALDSLGPGQALADTLFGLDRAWQDRRIGATFQF 317 >gi|57241883|ref|ZP_00369823.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57017075|gb|EAL53856.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 322 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 13/211 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ L L+A S GSDS L L + F +++ R+ + E Sbjct: 6 FLEHL-RERKNLLAFSYGSDSTALFYLL-------ERENVIFDMALINYKTRQNSDLEEE 57 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + R + + + AR+ RYA + ++ AH +D Sbjct: 58 EARLLAKRFH--KQIFIQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDL 115 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E M+ + M L GM N + RP L +E I +FL + + + +D Sbjct: 116 FEWFLMQLSKGAGA--MELLGMSA-FEKRENYTLIRPLLNVTKEQILAFLRENKLKYFDD 172 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 SN D +F+R +R D L ++K Sbjct: 173 ESNKDLKFKRNFIREHFSDEFLRHFSKGVQK 203 >gi|224418853|ref|ZP_03656859.1| hypothetical protein HcanM9_06215 [Helicobacter canadensis MIT 98-5491] gi|253828158|ref|ZP_04871043.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313142371|ref|ZP_07804564.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253511564|gb|EES90223.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313131402|gb|EFR49019.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 329 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 31/310 (10%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ L A L+A SGG DS L L S I F VD+ +R+ + E+ Sbjct: 8 FLEEL-KGAKNLLAFSGGLDSTALYFLLKSY-------GIAFDIAIVDYGIRQQSHLEIS 59 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +C + K K A AR RY + + ++ AH +D Sbjct: 60 RAKTLCFWDNKQCYTL--KAPKINKNFEANARAIRYDFFTSLVSQNSYQNLILAHQLNDN 117 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISW 188 LE M+ + + + M + ++ + N +I RP + R ++ +L I + Sbjct: 118 LEWFLMQFCKGTSIENMQIP--PKSLFWKQNQKTCYILRPMIFLPRITLQMYLQTHKIFY 175 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ED SN D ++R R++ + ++ FQ +A K + Sbjct: 176 FEDSSNADTAYKRNYFRKYFAN-------PLIQNFQGGIQFSLELLAKEHSKTDLEDLGG 228 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + L+ L+Y+ + S + ++ L + V G++ Sbjct: 229 FFVFKHNALS-----LYYIDKASKKLG----YCLSKIQKQQCQTHLTQQEFSIVLGGKIA 279 Query: 309 IDRRANFLWI 318 +++ N + I Sbjct: 280 LEKSQNQICI 289 >gi|224373408|ref|YP_002607780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia profundicola AmH] gi|223589428|gb|ACM93164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia profundicola AmH] Length = 317 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 13/183 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+A S G DS L L I F V++ R+T+ +EV Y ++ Sbjct: 8 LLAFSAGVDSTALFFWLIE-------NNIPFDIAIVNYHTRKTSNEEVEYAKELAETYNK 60 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + K AR RY E K ++TAH +D+ E M+ + Sbjct: 61 KIYIKDCVLPKFS---EKEARICRYVFFEEIIKKHGYHTLITAHQLNDRFEWFLMQFSKG 117 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 K + G + + I RPF R +I +FL +R I + D SN D +++R Sbjct: 118 AGLKELIAMGEWEEREF---YKIYRPFYNISRNEIVTFLNERGIKYYTDESNFDKKYKRN 174 Query: 203 RVR 205 +R Sbjct: 175 FIR 177 >gi|261338173|ref|ZP_05966057.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093] gi|270276810|gb|EFA22664.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093] Length = 287 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 10/185 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILVA SGG DS+ L A +V + ++ A+ VDH +++ + + + C+ L Sbjct: 47 ILVACSGGRDSLALAAAARTVCTSWG---LRCGAVIVDHSMQQGSAEVAARAAKQCADLG 103 Query: 82 IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +V PQT G AAAR+ RY I+ A A ++ AHT +DQ ETV + Sbjct: 104 LEPVIVERIVLDPQTMRQRGSEAAARQMRYETITRVAGRTGAEAVLLAHTRNDQAETVLI 163 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 GM I ++ + RP L R D + + +DP+N + Sbjct: 164 NLLTSGGLDGMAGMPERTQIA---DVALLRPLLDLTRADTTQICESLGLEFWDDPTNGEF 220 Query: 198 RFERV 202 R Sbjct: 221 LSARN 225 >gi|108758860|ref|YP_632533.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622] gi|108462740|gb|ABF87925.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622] Length = 451 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 22/332 (6%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 + R + +L+AVSGG+DS LL+ V ++ S+DH LR A +E Sbjct: 18 AYTRLGLEGGSVLLAVSGGADSTALLMGTVLVAERLR---LRVEVASLDHGLRPEAAEEA 74 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 R VS + + + V + + P G+ A AREARYA + ++ TAHT D Sbjct: 75 RQVSVLAAARGLPCHVQALRL-HPGVGIEARAREARYAALEALRLERGLDVVATAHTATD 133 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET+ MR R A +G +++ + RP L C RE++ +FL ++ +++ Sbjct: 134 QAETLLMRLARGTALRGA-------VGIHEARPGLVRPLLSCTREEVVAFLAEQGVAYVT 186 Query: 191 DPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 DP NTD R RVR V A+ + F + + + +A + Sbjct: 187 DPMNTDPVHFRTRVRLGVLPALSRAAGFAVEGHLAAFARVVAEDESLLASMADAAFDRLR 246 Query: 247 RSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 A+ + ++ L +L A + ++R + + G ++G Sbjct: 247 LEDGALDAVGVRALEPALRRRVLARLVAGTEAAVDEATLARVQRAVA-----QGGTATLG 301 Query: 306 R-VVIDRRANFLWITRAVRNLPTLILYPEETT 336 R V+ + + R V + P L E Sbjct: 302 RGYVLRATSGRVRCVRQVPSTPPAELRLEHAG 333 >gi|303232429|ref|ZP_07319121.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4] gi|302481513|gb|EFL44581.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4] Length = 482 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 42/291 (14%) Query: 26 VSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKDEVR-YVSDVC 77 VSGG+DS+ L + + R +I + + + V+H LR +A DE YV + Sbjct: 2 VSGGADSVALTVLACSRPLDLRDGRGPVRINPARLAILHVNHGLRGSAADEDESYVRLLA 61 Query: 78 SRLRIAHSVVSWKNSKP-----------QTGLMAAAREARYALISEHAKT--------IN 118 I V ++ + + A R+ RY ++ A+ Sbjct: 62 GHFHIPCYVEHVNVAQLAKKQAAAHRGASSNIEAVGRQVRYDCATKLARQLCTQTHTRYA 121 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I+TAHT +D+ ET + + + G+ + + I RP L E++ Sbjct: 122 DARIVTAHTANDRAETFLINATQGSGLAGL-------SSIPRKRQIIVRPLLDFTHEELC 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231 L +++I W ED +N D + R +R V + + D + Sbjct: 175 DILSKQDIPWHEDETNKDTWYMRAYMRHAVLPRLQTKNINVVRNIAASCDILADEHAFLE 234 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISL 281 + + V R IA+ L +D L ++R++ G + L Sbjct: 235 RLAHEELTRLTRVKTRYTIALCAGRLVRLDIALARRVVRLACLELFGDLRL 285 >gi|148241171|ref|YP_001226328.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307] gi|147849481|emb|CAK26975.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307] Length = 337 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 22/271 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +L+A+SGG DS+ +L R + +H R+ A +++ V Sbjct: 32 QGSGLLIAISGGQDSL---ALTRLLLDLREQHHWQLQLWHGNHNWRQDAAANAQHLQQVA 88 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + +V ++P AAAR+ RY + A+T + L++T HT D+ ET+ Sbjct: 89 AQWGLPLTV---DCAEPAPKSEAAARQWRYERLQRQAETSSCPLVLTGHTATDRAETLLF 145 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R GLS + T + + RP L R D ++ Q + D +N D Sbjct: 146 NLIRGA--DLTGLSSLRQTRPLGAGITVVRPLLAFSRADTQACCEQLGLLVWHDITNADR 203 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 +F R R+R V + L + + L ++ + ++ AI + Sbjct: 204 QFSRNRLRLDV----IPELEALNPGATQHLARAAQLLEELEGQHSALEALALEAIRSEPG 259 Query: 258 NIDSTLLF----------YLLRVSAAICGGQ 278 D LL Q Sbjct: 260 RADLNRQRWQEQPIKLQKRLLHRWVQQTSQQ 290 >gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704] gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704] Length = 775 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 59/374 (15%), Positives = 119/374 (31%), Gaps = 72/374 (19%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +P+ + +AVSGG DSM L + + +K A+ VDH R+ + DE V Sbjct: 26 RKDGFPSRVALAVSGGPDSMALAHLCRKLTVEGYIPDLKVIALIVDHKSRKGSADEALRV 85 Query: 74 SDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + +++ K + AR+ RY + + N ++ H Sbjct: 86 AGWIQEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHH 145 Query: 128 FDDQLETVYMRSQRDYAEKGM-------------GLSGMCDT------------------ 156 DD +ET +R + + G+ GL G+ + Sbjct: 146 RDDNIETGLLRLSQGHRRFGLAGFDCISPIPECHGLWGVSHSGDISSLETILTSRTPESK 205 Query: 157 -----------------------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +++ RPF + + + + + DP+ Sbjct: 206 AKPSNLAEHLDITGVSPQLNIAHFTASGGVYLLRPFRAFPKARLEATCRNAMVPFVVDPT 265 Query: 194 NTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHMRSII 250 N D R VR+ + DL D ++ + L+ + + Sbjct: 266 NADHTLTVRNTVRKLLASDDLPRALQSPPILALMDRTQRIKERLQELVDGLVKLIKVVNF 325 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLP-------GYRSMERVMLFLKSGKRGCVS 303 L + L + +A P +++ ++ + +G +S Sbjct: 326 DFRTGTLLLRLPSAKDLKGLESAYNDDSRGYPYVDSLEVRLKALRALIELVAAGSNVQIS 385 Query: 304 IGRVVIDRRANFLW 317 ++ R A +W Sbjct: 386 QDGLL--RAAQMIW 397 >gi|254419185|ref|ZP_05032909.1| PP-loop family [Brevundimonas sp. BAL3] gi|196185362|gb|EDX80338.1| PP-loop family [Brevundimonas sp. BAL3] Length = 449 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 145/368 (39%), Gaps = 36/368 (9%) Query: 10 RFFVR-----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 R F R S P + +A+SGG DS+ L + +A+SVDH L Sbjct: 17 RVFARLDRRLSSDAPQPVALALSGGGDSI---ALLRLAAAWARARGRPLTALSVDHRLNP 73 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + D R+ + + W KP TGL AAAR AR+ LI+E A+ I A +++ Sbjct: 74 ASADWTRFAGEAARAAGADWRGLVWDGDKPATGLTAAARAARHRLIAEAARAIGARVVLF 133 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DD E MR++ + S L + RP L RRE +R++L + Sbjct: 134 AHTADDIAEADLMRAEGSTLGRVREWSP-SPVWPEGRGLMLLRPLLDERRETLRAWLAGQ 192 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 W EDP+N D RF R R RR + Sbjct: 193 GAEWIEDPANADPRFGRSRARRALAGTVPDG---------------------AAAGRDRP 231 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 I A + I + L + GG + P ++R+M L+ G+ ++ Sbjct: 232 SSEGITANHDGTVRIARDVRARGLAAALVCVGGGATPPRGDRLDRLMQRLQVGEDFAAAL 291 Query: 305 GRVVIDRRANFLWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359 ++ + + R R P L+L+P VWDGR+ F+ S + + P Sbjct: 292 CGARVEADGETILLMREAGELARRAPPPLLLHPGVEAVWDGRFAFR-ASGAGWSVAPARG 350 Query: 360 RKADVPSG 367 R + + + Sbjct: 351 RLSALSAA 358 >gi|154149315|ref|YP_001406091.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381] gi|153805324|gb|ABS52331.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381] Length = 331 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 11/184 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++A S GSDS L L + +KF V++ RE + E+ ++C + + Sbjct: 22 ILAFSHGSDSTALFHTLLDL-------NLKFDVAFVNYKTRENSDLEMVCARELCEKNNL 74 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + AR+ R++ + +++TAH +D+ E M+ + Sbjct: 75 KFHCLISPLKFNLNGNFENEARKIRWSFFEKLCVQNGYNVVITAHQLNDKFEWFLMQLSK 134 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + + N + RP L +++I +FL N+ + D SN + +F+R Sbjct: 135 GSGLVNLLS---PEMVEKRENFTVLRPLLNTGKDEILNFLRINNLKFFNDISNQNLKFKR 191 Query: 202 VRVR 205 +R Sbjct: 192 NFIR 195 >gi|159471209|ref|XP_001693749.1| predicted protein [Chlamydomonas reinhardtii] gi|158283252|gb|EDP09003.1| predicted protein [Chlamydomonas reinhardtii] Length = 329 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 11/252 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC-SRL 80 +LVAVSGG DS+ LL L + S+ + + DH R + +V ++ RL Sbjct: 24 VLVAVSGGQDSVCLLQLLADLRHLYSWR--RLGVVHCDHRWRTDSAANAAFVVELATQRL 81 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + +ARE RY + S A ++TAHT D+ T+ + Sbjct: 82 GLEAEDVHVEAR-----CERSAREWRYHVFSRVAAECGYGAVVTAHTSTDRR-TMLLNLL 135 Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R G+ LS + + RP L+ RE+ +F+ Q + D +N + Sbjct: 136 RGAGPSGLVALSRNRPLPPPPGPVRLVRPLLQFAREETLAFVQQAGLPHFHDSTNDHNEH 195 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R R+R V ++ ++V + + + +S + + Sbjct: 196 RRNRLRNEVMPQLRAGFNPRLDLALTRFMEVLEPEVEFVEDMAELAYGRALKLSA-LRKL 254 Query: 260 DSTLLFYLLRVS 271 L +L Sbjct: 255 PLALQRRVLHSW 266 >gi|329939449|ref|ZP_08288785.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045] gi|329301678|gb|EGG45572.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045] Length = 392 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 122/305 (40%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+ + V++ L Sbjct: 93 VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHGLQAGSDQRAEEVAERLRALG 149 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + A AT ++ HT DDQ ETV + R Sbjct: 150 LHPVESIAVSVGRDGGPEAAARDARYAALDAAADRHGATAVLLGHTRDDQAETVLLGLAR 209 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFLR R+ R+ + +++ +DP N D + R Sbjct: 210 GSGIR--SLSGMAAVS--GAAGRYRRPFLRLDRQTARTACMAQSLPVWDDPHNADPAYTR 265 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN--- 258 R+R AL + + +++ A + + R + S + Sbjct: 266 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAREAERGVRDESGRLECAKL 325 Query: 259 --IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314 + + +LR + G R +E + + + G+ GRVV+ R+ Sbjct: 326 DVLPPAVRRRILRRAVLDAGAPGGSLFARHIEEIDRLVTAWRGQGAINLPGRVVVRRQGG 385 Query: 315 FLWIT 319 L I Sbjct: 386 RLVIR 390 >gi|240047433|ref|YP_002960821.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae HRC/581] gi|239985005|emb|CAT04998.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae] Length = 295 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 14/194 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG+DSM LL F K V++ LR+ + E V C + Sbjct: 8 RFLLAISGGADSMYLLD---------RFKKFDIIVAHVNYNLRKQSILEQDLVEKYCQKN 58 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 I + ++ KN + ++ + AR RY S+ + + ++ AH DD LET+ M+ Sbjct: 59 NITYQILELKNIEYKSNFQSEARNLRYKFFSQVYQKYHCDYLVIAHHSDDFLETILMQKL 118 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199 ++ G+ + + I RP + + + I + + NI++ +D SN + Sbjct: 119 KNKIVNFWGIKAKINNF----GMQIWRPLIYKVDKNKIIKYNKKNNIAYFDDQSNFKPIY 174 Query: 200 ERVRVRRFVRDIDL 213 +R ++R ++ Sbjct: 175 KRNQIRMDIQKWSW 188 >gi|31544871|ref|NP_853449.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)] gi|61216586|sp|Q7NAI9|TILS_MYCGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|31541717|gb|AAP57017.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)] gi|284930947|gb|ADC30886.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(high)] Length = 287 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 115/295 (38%), Gaps = 26/295 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 L+ VSGG DS+ LL DR +IK A +++ R TA + VSD C Sbjct: 6 KKQYLIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALRDQLIVSDYCL 56 Query: 79 RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +I ++S S + AR+ RY + AH DD LET M Sbjct: 57 KNKIPLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIM 116 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + ++ GL +L I RP L +++I S+L Q I + D SN Sbjct: 117 QYDKNQELLFYGLHQESSY----QSLKIFRPLLNLWKDEILSYLEQDKIVYGVDESNFLS 172 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ++R ++R + + ++ F +L K + + + + L Sbjct: 173 TYQRNKIRTNLSKLSQEQKQARLDFFLELNKKNQVRYQSVKDFFSSW--------DCNYL 224 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVID 310 ++ ++L +Y + + E ++ FL K+ KR + G +I Sbjct: 225 DLINSLEYY--NLLYLWFSKNNIKYSKQKAENILSFLQKKNNKRFRLKAGVYLIK 277 >gi|298246393|ref|ZP_06970199.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963] gi|297553874|gb|EFH87739.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963] Length = 487 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 37/326 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVL------SDRSFGKIKFSAISVDHCLRE-TAKDE 69 ++VAVSGG+D L S + + ++ ++H LRE + + Sbjct: 17 ASGGRLVVAVSGGAD-----SLCLLHLLRSLCGSGKRYPTLQLHVAHLNHRLREPVSSQD 71 Query: 70 VRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 V+++ + + + L AAREARY + A I A Sbjct: 72 AAAVAELARTWGLPVTLGEEDIQVLAKRDHLSLEEAAREARYRFLRRVAA---GDPIAVA 128 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DDQ+ET+ + R G++ M + I RP L R D ++ Q Sbjct: 129 HHQDDQVETLVLHWIRGG-----GIASMSGLQPRQQD--IIRPLLIFTRADTLAYCAQHG 181 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLI 238 ++ ED SN D R++R RVR + + L + Q + V Sbjct: 182 LTPLEDASNADLRYQRNRVRHELLPLLEQLNPNICATLLRNSEVMQVDVAWIEVQVDQHW 241 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLL--RVSAAICGGQ-ISLPGYRSMERVMLFLK 295 ++ IA+ + L L L R SA +C GQ + ++ L + Sbjct: 242 SAVISHEETETIALRRSALLALPLSLQRHLWRRASANLCAGQSPFELRHYTLIEQALSQE 301 Query: 296 SGKRGCVSI-GRVVIDRRANFLWITR 320 +G+ + + G++ R+ + + R Sbjct: 302 TGEALTLHLPGQLHFWRQGEQVLLKR 327 >gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] gi|256587394|gb|ACU98527.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017] Length = 324 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 133/330 (40%), Gaps = 25/330 (7%) Query: 2 FLSPIESVRFF-----VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 L+ +VR F V + + + VAVSGG+DS+ L A V R + A+ Sbjct: 1 MLTVRRAVRLFLSEPEVSAWLGSGQVFVAVSGGADSLALAEAAAHVGRRRG---LTVGAL 57 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 VDH L+ + + + + RL + + V G AAAR ARYA + EHA Sbjct: 58 VVDHGLQAGSAEVAEWAAQTALRLGVDTAKVLPVTVSGGGGPEAAARRARYAALREHA-- 115 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + L++ HT DDQ ETV + R + + L+ RP L R Sbjct: 116 GDDALVLFGHTRDDQAETVLLGLGRGSGPRSLAGM-------RPLDPPWGRPLLDVPRSV 168 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVN 231 + + +S DP NTD RF RVRVR V + L + + LR + Sbjct: 169 TAAACEELGVSPWHDPHNTDPRFRRVRVRHEVLPLLEDVLAGGVAEALARTARQLREDCD 228 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERV 290 AM S + + ++ + ++ +LR G +++ RS++ + Sbjct: 229 ALDAMAAEVAEQARDGSELRVDV-LVRVPPSVRRRVLRTWLLEGGVRELTDAHLRSVDDL 287 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + + G+ G G V R L + R Sbjct: 288 VGRWR-GQGGVFLPGDVEARRGHEKLVLNR 316 >gi|288921152|ref|ZP_06415440.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f] gi|288347461|gb|EFC81750.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f] Length = 591 Score = 156 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 13/232 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR V L A +LVA SGG+DS+ L A+ V R+ ++ ++VDH + ++ Sbjct: 13 VRDAVADLPPGALVLVACSGGADSLALAAAVAFVAPRRA---LRAGLLTVDHAWDDNSRA 69 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V+ L ++ + + P AAR+ R + A+ ++A ++ HT Sbjct: 70 RAEDVAAQGRALGLSLVEI---LAAPSPRSEGAARDERRKALLAAARRLDAQAVLLGHTL 126 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV +R R + LSGM L+ I RP L RR+ R + + Sbjct: 127 DDQAETVLLRLARGSGAR--SLSGMPA-----LDGLIRRPLLGLRRDQTRQACQFLGLPY 179 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 EDP+N D F R R R V + L + + + A A + + Sbjct: 180 WEDPTNADPAFARARTRSRVLPVLEAELGPGIAQALARTADLLRADAEALDE 231 >gi|332706450|ref|ZP_08426511.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L] gi|332354334|gb|EGJ33813.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L] Length = 337 Score = 156 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 98/301 (32%), Gaps = 31/301 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VR 71 + L +LVAVSGG L +L + K + DH DE Sbjct: 22 KLLPKNQQVLVAVSGGQ---DSLCLSKLLLDLQPKWKWQLGIAHCDHRW---TYDEGISL 75 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +V + + + K +AAR+ RY + + A+T ++T HT D+ Sbjct: 76 HVQQIAQSWGLPFHLRIAPEVKKS---ESAARQWRYQALIDIAQTQGYATVVTGHTKSDR 132 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV R G L + + + RP L R + F Q+ +S D Sbjct: 133 AETVLYNLIRGSGTDG--LQALTWERPLAPGVRLVRPLLDTSRSETLQFCEQQQLSIWVD 190 Query: 192 PSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 N D + R R+R+ + AL + + + N + + + Sbjct: 191 AYNQDLNYARNRIRQELIPYLKTHFNPQVETALSQIAEILRADVEYLENTAEQIQKQAMA 250 Query: 244 VHMRSIIAISQDILNIDS--------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 V S ++ L ++R Q + +E V + Sbjct: 251 VPTVEEDPASNSPPRLNRLVLQQAPLALQRRVIRKFLQ--ENQTKALSFEQIEAVTGLIA 308 Query: 296 S 296 + Sbjct: 309 A 309 >gi|295098771|emb|CBK87860.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain [Eubacterium cylindroides T2-87] Length = 380 Score = 156 bits (396), Expect = 5e-36, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 22/288 (7%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL L+ V++ R+TA + + V D C I V Sbjct: 1 MALLDKLYK-------QGHTIIVAHVNYHKRDTANRDEKIVRDYCQERSIEVEV-QEPTF 52 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 ++ + AR+ RY E A + I AH DD LET + R+ GL Sbjct: 53 DNKSNFQSWARKVRYDFFFELATKNDTDQIYVAHHLDDHLETYLFQKSRNMLCDHYGLKS 112 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + I RP L + + + Q NI + D SN + + R ++R I+ Sbjct: 113 ENIM----KGMKIIRPLLEETKAQLIEYCDQNNIEYGIDESNLGNDYTRNKIRH--SQIE 166 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272 +L K++ ++++ N + ++ +L + +++L Sbjct: 167 KMSLLEKLRLNEEIQK--ENIKLKDKREKAASFLKGWNRSIDTLLKQEDA--WFILEYYL 222 Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + G + M+ ++ L+S + I ++ L+ + Sbjct: 223 HLEIGNHY--SKKHMKSLIEQLQS--NCLLEIDGYYLESYEGMLYFKK 266 >gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] gi|126237526|gb|ABO00927.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS] Length = 320 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 59/276 (21%), Positives = 95/276 (34%), Gaps = 22/276 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E RF R L VA+SGG+DS+ L +L +A+ VDH L+ + Sbjct: 13 EVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPT--------TALIVDHGLQPDS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 RL + V + G AAAR ARY + ++ H Sbjct: 65 AAVAETARAEALRLGCPDAHVLRVDVGTSGGPEAAARTARYGALRAA---HGGAPVLLGH 121 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + +CD Y RP L RR + + + Sbjct: 122 TLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELGL 174 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 DP N+D R+ R R+R V + L + + + Sbjct: 175 HPWVDPHNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLDAQAGAAL 234 Query: 247 RSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQ 278 + + + + + + ++R G + Sbjct: 235 AEVTTGAGLDTARLAELPAAIRRRVIRSWLLAGGAR 270 >gi|317123757|ref|YP_004097869.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043] gi|315587845|gb|ADU47142.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043] Length = 333 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 121/328 (36%), Gaps = 21/328 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + +LVA SGG+DS L ++ + ++ A+ VDH L+E + Sbjct: 14 AVRQHFADVPEGGLVLVACSGGTDS---LALAAALAFEAPRSGLRGGAVVVDHGLQEGSG 70 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C L + V+ + +GL A AR ARY I A + A+ ++ H Sbjct: 71 AVAEQAAQTCRELGLSPVEVMVAEVRITGSGLEADARAARYKAIDAVADRVGASQVLLGH 130 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ E V + R + + + RP L R + + Sbjct: 131 TRDDQAEQVLLGLSRGSGARSLSGMPL-------RRGRFVRPLLALPRATTTAACEALGV 183 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAML---IPK 240 DP N D F RVR RR + ++ + + DL + + + L + Sbjct: 184 QPWHDPHNEDPSFRRVRARRLLGALEGDLGPGFAAALARSADLLREDADYLESLAIRARE 243 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GK 298 L Q + + + + R+ AA G IS +E + L S G+ Sbjct: 244 ELPATAGDPGVDLQALAALPRAIRTRVWRILAAEAGAPISDVTAAHVESLDALLTSWHGQ 303 Query: 299 RGCVSIGRVVIDRRANFLWIT--RAVRN 324 G + + R + + + R + Sbjct: 304 GPLHVPGGIAVARTGDAIRFSPIRETAD 331 >gi|283457230|ref|YP_003361800.1| putative ATPase [Rothia mucilaginosa DY-18] gi|283133215|dbj|BAI63980.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Rothia mucilaginosa DY-18] Length = 377 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 26/293 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS L G ++ AI VDH L+E + + + L Sbjct: 53 LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTDLG 109 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + G AAR ARY ++ + A ++ HT DDQ ETV + Sbjct: 110 LHPVITEKVQVPVGNMGPEMAARTARYTAFTKAVEATGARAVLLGHTLDDQAETVLLGLS 169 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + L+GM + + + RPFL RR D+ + ++ DP+NTD+ Sbjct: 170 RGSGTR--SLAGMPPVRV-EEGVTYLRPFLGLRRTDMLNICDAETLTPWIDPTNTDETLM 226 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSI 249 R R+R V L + + V A + + V +R I Sbjct: 227 RARIRHSVLPYLEEHLGGDVARSLARTASVAGPDAEYLDEQAQVAYEQALLPGGTAVRGI 286 Query: 250 IAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 +L+ + L +L + GG+ PG+ ++ + F Sbjct: 287 EREDAVLLDRAQVAALHPALRLRVLAAACKAAGGEN--PGFERLQALDSFTAE 337 >gi|297201398|ref|ZP_06918795.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083] gi|197713806|gb|EDY57840.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083] Length = 350 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 119/306 (38%), Gaps = 12/306 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ ++VDH L+ + V L Sbjct: 48 VLVACSGGADSMALASALAFEAPKLG---LRAGGVTVDHGLQPGSDLRAEEVVLRLRELG 104 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 105 LDPVESTAVTVGREGGPEAAARDARYAALDAAAERQGAIAVLLGHTRDDQAETVLLGLAR 164 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + RPFL R+ R + +++ +DP NTD + R Sbjct: 165 GSGIRSLSGMAAVSGGPGAAR-RYRRPFLGLDRQTARKACMVQSLPVWDDPHNTDPAYTR 223 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQDI 256 R+R AL + + +++ A + + S+ + + Sbjct: 224 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEASVRDAAGLLECAKL 283 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRAN 314 + + +LR AAI G + + + L +G +G +++ V+ +R Sbjct: 284 YALPPAVRRRILR-QAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVAQRQG 342 Query: 315 FLWITR 320 + R Sbjct: 343 GRLVIR 348 >gi|11466394|ref|NP_038397.1| hypothetical chloroplast RF62 [Mesostigma viride] gi|12230820|sp|Q9MUR3|TILS_MESVI RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|7259537|gb|AAF43838.1|AF166114_50 hypothetical chloroplast RF62 [Mesostigma viride] Length = 310 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L IL+A SGG DS+ L+ L + ++ ++ DH ++++ ++ Sbjct: 18 LKKNDRILIAASGGQDSISLIKILVELQPQWNW---DLGIVNCDHSWNQSSRKGSSQIAQ 74 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L I + + Q ARE RY I + A + +I+TAH D++ET Sbjct: 75 IAQLLNIDFYQI---VTCHQLINEEKAREWRYQKIEDIAFSNKYNVIVTAHNASDRIETF 131 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + R + G+ + T + I RP L R ++++F+ + ++ D SN Sbjct: 132 FFNLLRGTSI--TGVQSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHLPLWPDTSNQ 189 Query: 196 DDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 F+R R+R+ +R + + +F ++ + + + Sbjct: 190 SLFFKRNRIRKQLLPYLRKYFNPKVDKVIAQFAEIIHDESFYMENVTQIIEKQLFFGSKN 249 Query: 252 ISQDIL-NIDSTLLFYLLRVSA 272 I Q+ + N+ + +++ Sbjct: 250 IQQEFIENLPIAIERRIIKKMI 271 >gi|119962110|ref|YP_945961.1| tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1] gi|119948969|gb|ABM07880.1| putative tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1] Length = 356 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 20/295 (6%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDE 69 + S YP+ +LVA SGG DS+ L S + VDH L+ + + Sbjct: 4 ALASAGYPSRVLVACSGGPDSLALAAVAAYFARRGHVDGHPVSVAGVVVDHQLQAGSAEV 63 Query: 70 VRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + V L + V + + + G AAAR+AR+A + A + I+ HT Sbjct: 64 AARTASVLRELGLSPVEVRTVEVASTGFGPEAAARDARHAALESAADHLGCDAILLGHTL 123 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ E V + R + + + RPFL RRE+ + Sbjct: 124 DDQAEQVLLGLARGSGTRSLAGM-------RPARGRLLRPFLGLRREETLEICEVEELDP 176 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 DPSN D F R R R V + L + + + A + S Sbjct: 177 WHDPSNADPAFARSRTRVEVMPVLEEKLGPGVAESLARTAAILQQDADFLEDLANETYLS 236 Query: 249 II-------AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 ++ + +D + + + L F ++ +AA GGQ PGY ++ L+ Sbjct: 237 LVQRVDDGAWLPEDAVRELPAALRFRVIAKAAADVGGQQ--PGYGRLQAAEALLR 289 >gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum] gi|122211731|sp|Q32RJ9|TILS_ZYGCR RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61393739|gb|AAX45881.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum] Length = 420 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 124/329 (37%), Gaps = 57/329 (17%) Query: 14 RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +S+++P IL+AVSGG DS+ LL L+ + RS K + DH + + + Sbjct: 49 KSILHPYQRILIAVSGGQDSICLLNILNKL---RSTWHWKLGIVHCDHKWYLDSALQAIH 105 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 VS + + ++I + AR RY LI A N ++I+T HT D++ Sbjct: 106 VSRLAANMQIDLY---QALTTQSVNNEQLARNWRYELIRHVAICHNFSVIVTGHTASDRV 162 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI----------------------------------L 158 ET+ R G+ + Sbjct: 163 ETLIYNLIRGSGISGLQSISWKRKLNSMLTIRMRSVEEQIILYSKHVKCYQNRENLLEDK 222 Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218 ++++++ RP L R +++ + +S D SN + R R+R + + Sbjct: 223 KNVDIYLIRPLLNVSRMELKHLVQNWKLSIWSDCSNQNISICRNRIRHQLLPYLRQYFHP 282 Query: 219 KM--------KKFQDLRVKVNNAVAMLIPKYLT-----VHMRSIIAISQDILN-IDSTLL 264 K+ + + +++ ++ K L+ ++ ++ + + ++L + + Sbjct: 283 KIDYVLNSCTEVMYTETLYLDSIARYVLSKALSFISMPLNDQTCVKLDFELLRAVPLAIQ 342 Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLF 293 +L+ + ++ +E+V + Sbjct: 343 RRILKYFLDVITHTSV--SFKHVEQVRIA 369 >gi|260435057|ref|ZP_05789027.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109] gi|260412931|gb|EEX06227.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109] Length = 326 Score = 156 bits (395), Expect = 6e-36, Method: Composition-based stats. Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 10/287 (3%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +L+AVSGG DSM L + S DH + + +S Sbjct: 21 LPQGSSLLLAVSGGQDSM---ALLALLQDLAPLHGWGLSLWHGDHGWHDNSSRITAELSS 77 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + ++ V + + Q A AR+ RY +++ + A ++ T HT D+ ET+ Sbjct: 78 WCQQRQLPLQVD--QAAPGQVPSEAKARQWRYERLAQQGRQAGADVV-TGHTASDRAETM 134 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R + + + W+ RP L +R D + + EDPSN Sbjct: 135 LLQLARGSDLACLAALPSVRPLSPE-GPWLRRPLLHLQRHDTLQICQELALPIWEDPSNQ 193 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVHMRSIIAIS 253 F R R+R+ V + ++ DL +V+ + + +++ + Sbjct: 194 SPEFARNRIRQEVLPVLEALHPGSTQRMSDLAERVSQVRDSQKELSQMALNLLQTAAGLD 253 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 + L S+ LL G +LP R ++ + L++ G Sbjct: 254 RRGLGALSSASRRLLLAQWLQQQGVPTLPA-RQLDELSRRLENDGPG 299 >gi|328953064|ref|YP_004370398.1| tRNA(Ile)-lysidine synthase [Desulfobacca acetoxidans DSM 11109] gi|328453388|gb|AEB09217.1| tRNA(Ile)-lysidine synthase [Desulfobacca acetoxidans DSM 11109] Length = 470 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 116/322 (36%), Gaps = 23/322 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 R + +LV VSGG DS LH + I DH LR ++D+ + Sbjct: 17 RLIQPHDRVLVGVSGGPDST---ALLHLLHRLAPGWPISLGVAHFDHKLRGADSQDDAAW 73 Query: 73 VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 V+ + L++ V + + + AAR+ R + + + HT Sbjct: 74 VAKLAEALKLPFFHGEGDVRRHAQQEKISVQMAARQLRLKFFHTIRQRHHYHKLALGHTA 133 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQLE ++R R +G L GM I RP L + I ++L + + Sbjct: 134 DDQLELFFLRLLRGSGPEG--LKGMWPQSPTG----IIRPLLGTPKTRILAWLASCQLPF 187 Query: 189 CEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 ED SN + R ++R + A+ Q+ ++ A+ + + Sbjct: 188 REDASNLSRHYRRNQLRLDLLPQLLSYNPRLPAAVEHLQALLQEQEEYLSQEAAINLDRL 247 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 T +L + + +LR++ A G ++ + +E + + Sbjct: 248 KTAAAACPSLPVDGLLALPPAIQRRVLRLALAQAGVDLNRLTFDHVEAARKLAQRPQPAG 307 Query: 302 --VSIGRVVIDRRANFLWITRA 321 G + R+ + L T+ Sbjct: 308 EISLPGGWRLVRQYSELQFTKE 329 >gi|300780433|ref|ZP_07090289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium genitalium ATCC 33030] gi|300534543|gb|EFK55602.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium genitalium ATCC 33030] Length = 289 Score = 156 bits (394), Expect = 8e-36, Method: Composition-based stats. Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 18/260 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DS ++++ + A+ VDH L+E + L + Sbjct: 12 VIGLSGGPDS-------LALVAAAAAEGCDMRAVVVDHGLQEGSASVAEQARAAAETLGV 64 Query: 83 AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 ++V + P + AAAREARY + A+ + + AHT DDQ ET+ + + R Sbjct: 65 TATIVRVEVETAPGESVEAAAREARYQALFAEAEADGSD-VWVAHTLDDQAETLLLGALR 123 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G+S + +T + + RPFL+ RR + + + DP N D + R Sbjct: 124 G---NPAGMSPVTETA----SGRLVRPFLQIRRAETVGACEELGLQPWHDPMNDDTAYRR 176 Query: 202 VRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 V VR+ + + ++ A++ Y ++ D I Sbjct: 177 VAVRKSIIPALGDLIGGDAAAPLAKTAERIAADNALIDEAYDLSPTNDCAELAADPAPIR 236 Query: 261 STLLFYLLR-VSAAICGGQI 279 + LR + GGQ+ Sbjct: 237 QRRIRAWLRTYGVELGGGQV 256 >gi|268679075|ref|YP_003303506.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268617106|gb|ACZ11471.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 331 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 16/208 (7%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A SGG DS L LH I F V++ R +++E Y ++ Sbjct: 15 LQHTKNLLAFSGGGDSTALFFLLH-------VKGISFDIAHVNYQTRPQSQEEEAYAKEL 67 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 R + + + AR RY ++ AH DQLE Sbjct: 68 SLRFNKNLFT--FTCNLKERNFEHHARHVRYEFFESLIHEHGYETLIMAHHLGDQLEWFL 125 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ KG GL M ++ I RP L + ++ FL + I + ED SN Sbjct: 126 MQLC-----KGAGLVEMIGMREWEKREAYTIVRPLLHVSKAHLKDFLEKEKIHFFEDESN 180 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKK 222 R R L A + K Sbjct: 181 ASFSHLRNTFRYRFATPLLEAYEAGIAK 208 >gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] gi|259533748|sp|C0ZNS6|TILS_RHOE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226183224|dbj|BAH31328.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4] Length = 325 Score = 155 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 107/279 (38%), Gaps = 21/279 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ ++VR + + ++VA+SGG+DS+ L A + A+ VDH Sbjct: 9 LLALRQAVRAWTVAFEPRRRVVVALSGGADSLALTAAAVAETD-------SVDALIVDHR 61 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L+ + R +D L + V + L AAAREARY+ + + + Sbjct: 62 LQPGSDAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP--- 118 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM + RP L RR R+ Sbjct: 119 VLLGHTLDDQAETVLLGLSRGSG--GRSIQGMAA-----FDAPWGRPLLGIRRSVTRAAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPK 240 + I+ EDP N + F RVR+R + L + ++ L Sbjct: 172 VDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILGGGVAEALARTATQLREDGEALDEY 231 Query: 241 YLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICG 276 + +R+++ + + + LR G Sbjct: 232 AEALLLRAVVDGEVEVDTLAEAPTAIRRRALRAWLLQGG 270 >gi|159040239|ref|YP_001539492.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205] gi|189035970|sp|A8M8I3|TILS_SALAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|157919074|gb|ABW00502.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205] Length = 333 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 119/312 (38%), Gaps = 14/312 (4%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +L +LVA SGG+ L + ++VDH L+E + Sbjct: 19 LTTLPDAGPVLVACSGGA---DSLALAAATAFVAPRLGRPAGLVTVDHGLQEGSARRATA 75 Query: 73 VSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 V D + + S+ G AAAREARY ++E A + A ++T HT DDQ Sbjct: 76 VVDWAHTAGLAPVEAIRVDVSERPGGPEAAAREARYQALTEAAGRLGAAALLTGHTRDDQ 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R +G+ T + + RP L RE R+ ++ D Sbjct: 136 AETVLLALARGAGPRGLAGM---PTRRWLGEALLLRPLLEVSREQTRAACTALGLAPWTD 192 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 P NTD + R RVR V + AL + ++ A + + TV + + Sbjct: 193 PHNTDPAYARARVRSEVLPALVRALGPGVLDNLARTARLVAADTAALDEQATVALDGVRH 252 Query: 252 ISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSI 304 + + + +L V A G + +R ++ + + G+ Sbjct: 253 PDGGLCVGGLAGLAPAVRGRVLHVWARELGARPGALSHRHVDALEALVTGWRGQGAAYLP 312 Query: 305 GRVVIDRRANFL 316 G + + RRA L Sbjct: 313 GGLRVFRRAGRL 324 >gi|225350936|ref|ZP_03741959.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158392|gb|EEG71634.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 364 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 31/278 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L + ++ I +DH L++ + + +D C L Sbjct: 45 IMVACSGGRDSMALAAVAAKTCASLG---LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101 Query: 82 IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V + G+ AAAREARY I + +A+ ++ AHT +DQ ETV + Sbjct: 102 LDPVRVRAIDVPDSRGIGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIGL 159 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-- 197 R + GM + + D + RP+L RE+ ++W +DP+N D Sbjct: 160 LRSSGLD--AVCGMNGSFIRD-GVRFLRPWLNMTREETTGICEDLRLAWWDDPTNGPDVG 216 Query: 198 ----------RF-ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238 + R R+R + + L L + +D R ++ + Sbjct: 217 NSGGNEPLPANYPLRSRIRHDLMPYLESFAGSDVVSKLALGARLAEDDRAYLDGVAQRVC 276 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + +TV+ II ++ + + D + ++ S A G Sbjct: 277 EQGVTVNNGEIIIDARALQSQDIAIRRRVIVRSLAEAG 314 >gi|312212468|emb|CBX92551.1| hypothetical protein [Leptosphaeria maculans] Length = 758 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 37/264 (14%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIA 83 A+SGG DSM L+ L+ R G A VDH R + +E +V++ +L + Sbjct: 108 AISGGVDSMALMT-LYYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVAEQLRQKLDVP 166 Query: 84 HSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 +V+ + + AR RY + E ++ N + ++ AH DDQ ETV MR Sbjct: 167 STVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHADDQAETVLMR 226 Query: 139 SQRDYAEKGM-------------GLSGMCDT---------------ILYDLNLWISRPFL 170 + G+ G+ G+ + ++ + I RP L Sbjct: 227 LANNRLRSGLQGIQGSEWIPECEGIYGLYHSGSPYTKIRPDNPSSLVVEQGGIQILRPLL 286 Query: 171 RCRREDIRSFLLQRNISWCEDPSNT-DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + + + + + W ED +N R +R + L L K + + Sbjct: 287 GFEKARLVATCKKACMPWVEDKTNQIRTLTARNAIRHIFQKHRLPK-ALSPKNLVKVSLH 345 Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS 253 + V + + + I+ Sbjct: 346 MQKRVEAHKAHAEQLFKKCNLLIN 369 >gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi] gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi] Length = 598 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 74/345 (21%), Positives = 138/345 (40%), Gaps = 25/345 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VAVSGG DSMG I + L + ++ A+ VDH +RE ++ E+ YV +V Sbjct: 121 KVGVAVSGGGDSMGTAILVKKWADYLKQKKGIDMEVVALIVDHQIREESEHEMLYVHEVL 180 Query: 78 SR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ + W +++ + AR R ++S + L+++ H D +E Sbjct: 181 TKTVGYKNVFCFQCLWPDNQKKQ--QRIARLKRQLIMSSECVSQKIDLLISGHHKQDNIE 238 Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ R G+ G+ + + D + ++RP L ++++ Q NI W EDP Sbjct: 239 TMIHRVAFSSGINGLNGIPLIYSYCVADATIMLARPGLVFDCNELKAVCTQYNIKWVEDP 298 Query: 193 SNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 N+D+R R +R + + Y + +R + +Y+ Sbjct: 299 KNSDEREFRSIIRSRLGLLYQSGVSPSNFYNFLLTLGAIRHIMLRESLNFYNRYVRFDDE 358 Query: 248 -SIIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 I L + + L + S++ V+ +L S KR S+G Sbjct: 359 LGFAGIYFYSLEKTAEFVASNALNSLIQYVTNREFPVTLGSIKNVVRYLPSTKR---SLG 415 Query: 306 RVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQ 345 ++ L++ R + T I + ++ VWD R+ Q Sbjct: 416 GCLLVPDKKVLYVIRDTGPLRRKKNHTTIRFTDKGIVWDNRFFIQ 460 >gi|284931702|gb|ADC31640.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. F] Length = 287 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 116/295 (39%), Gaps = 26/295 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 L+ VSGG DS+ LL DR +IK A +++ R TA + VSD C Sbjct: 6 KKQYLIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALHDQLIVSDYCL 56 Query: 79 RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +I ++S S + AR+ RY + AH DD LET M Sbjct: 57 KNKIPLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIM 116 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 + ++ + GL +L I RP L +++I S+L + I + D SN Sbjct: 117 QYDKNQEQLFYGLHQDSSY----QSLKIFRPLLNLWKDEILSYLEKDKIVYGVDESNFLL 172 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 ++R ++R + + ++ F +L K + + + + L Sbjct: 173 TYQRNKIRTNLSKLTQEQKQAQLDFFLELNKKNQVRYQSVKDFFSSW--------DCNYL 224 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVID 310 ++ ++L +Y + + E ++ FL K+ KR + G +I Sbjct: 225 DLINSLEYY--NLLYLWFSKNNIKYSKQKAENILSFLQKKNNKRFRLKAGVFLIK 277 >gi|42523405|ref|NP_968785.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100] gi|61216531|sp|Q6MLS8|TILS_BDEBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|39575611|emb|CAE79778.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100] Length = 316 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 28/309 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYV 73 + ILVA+SGG+DS+ LL +L V K A H +E K+ + Sbjct: 23 LQDKKILVALSGGTDSVALLRSLTKV-----HKKNLLGACYFHHGEDSNQEYRKEAQEFC 77 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +C +L I + A RE RY + K L+ T H DD LE Sbjct: 78 EKLCKKLEIEFYPLRASQLAKS---EAEYRELRYEALDRLKKEQGFELVATGHHRDDLLE 134 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T +R R +G + L + RP L +++++ +L + + EDP+ Sbjct: 135 TRLIRLIRGTGAQGFAAMHV-------LRDGLFRPLLEISKKELKKYLREERLRSFEDPT 187 Query: 194 NTDDRFERVRVRRF-VRDIDLHALYLKMKKFQDLRVKVNNAVA----MLIPKYLTVHMRS 248 N R +R ++ ++ A + L L+ + + Sbjct: 188 NKALDPLRNWLREEWLKSLERRARGSTAALARSLETIAQEIENRPWGDLLGQNEAYKTQG 247 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGCVSIGRV 307 + L + LL G + +E + L KS K + Sbjct: 248 LRRSF--YLTLSPFEQKRLLAQYLFSLGKRDF--SQSHLEEIQKRLDKSQKVITFKVAGC 303 Query: 308 VIDRRANFL 316 + A + Sbjct: 304 QWEVNAEQI 312 >gi|284034335|ref|YP_003384266.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836] gi|283813628|gb|ADB35467.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836] Length = 349 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 117/328 (35%), Gaps = 24/328 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRE 64 E+VR +R L +LVA SGG+ + K++ A + VDH L+ Sbjct: 32 EAVRAALRELPADTTVLVACSGGA-----DSLALAAAIAFEAPKLRLRAGAVIVDHGLQA 86 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +D C L + V + G AAR ARY + A A +++ Sbjct: 87 DSAHAAAIAADQCRSLGLDPVEVRAVEVGSEGGPEGAARAARYDALRAAADQFGADVVLL 146 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV + R + L+GM + RP L R + + Sbjct: 147 AHTRDDQAETVLLGLARGSGAR--SLAGMAPVA-----GLLRRPLLEVPRASTAAACIAS 199 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLT 243 + DP N D ++ RVRVR V + AL + + + L Sbjct: 200 GLRPWHDPHNDDPQYRRVRVRHEVLPVLEEALGPGVTEALARTAGLLRADADALDALAAD 259 Query: 244 VHMRSIIAISQDILN-------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + ++ ++L + LR +A G + + + F+ Sbjct: 260 LAETAVRRTDDEVLCDIGMLEAEPEAIRTRALRQAALEAGCHATDLTAGHVAAIDAFVTG 319 Query: 297 --GKRGCVSIGRVVIDRRANFLWITRAV 322 G+R V RR F+ + V Sbjct: 320 WRGQRWIDLPQGVRAMRRGGFIHLKPRV 347 >gi|206901988|ref|YP_002250586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus thermophilum H-6-12] gi|206741091|gb|ACI20149.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus thermophilum H-6-12] Length = 455 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 75/372 (20%), Positives = 139/372 (37%), Gaps = 72/372 (19%) Query: 3 LSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 L IE V F++S + I+++VSGGSDS+ L L+++ S + + + Sbjct: 8 LDYIEKKVLDFIKSESLISQGDSIILSVSGGSDSIALSEILYNLSS---ILNLNLYIVYI 64 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH +R E + D + I +S + + RE RY + + ++ I Sbjct: 65 DHHVRSNTYIEKEIIKDYATSRSIPYSFLDIYTTDFT---EKTLREERYKALIKFSEKIK 121 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I HT DDQ+ET+ M KG G+ G+C N RP + +E+I Sbjct: 122 FNKIALGHTLDDQIETIIM-----SFFKGYGIEGLCGIPTKRDN--FIRPIIILSKEEIL 174 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---------------------IDLHALY 217 + ++N+ + +D +N R R+R + I+ L Sbjct: 175 EYCKRKNLKYVDDFTNLLPITLRNRIRYQLIPFLKENIPQFPQSIISQSVILSIENDLLE 234 Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSA 272 KK+ D + NN + + + +H I + ++I + + +FY+LR + Sbjct: 235 KLSKKYFDGLKRSNNVIEIENEGWKLLHDAIKIRVLKEIFKNFNEELSNEAIFYILREMS 294 Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN-------L 325 + G + IG I ++I + ++ + Sbjct: 295 IMEG----------------------SKTLEIGNTEIYLYNQKIYIYKKEKHEFIIILPI 332 Query: 326 PTLILYPEETTV 337 P + P + Sbjct: 333 PGEVKLPTGEIL 344 >gi|212716399|ref|ZP_03324527.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM 16992] gi|212660652|gb|EEB21227.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM 16992] Length = 364 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 31/278 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L + ++ I +DH L++ + + +D C L Sbjct: 45 IMVACSGGRDSMALAAVAAKTCASLG---LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101 Query: 82 IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + V + G+ AAAREARY I + +A+ ++ AHT +DQ ETV + Sbjct: 102 LDPVRVRAIDVPDSRGIGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIGL 159 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-- 197 R + GM + + D + RP+L RE+ ++W +DP+N D Sbjct: 160 LRSSGLD--AVCGMNGSFIRD-GVRFLRPWLNMTREETTGICEDLRLAWWDDPTNGPDVG 216 Query: 198 ----------RF-ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238 + R R+R + + L L + +D R ++ + Sbjct: 217 NSGGNEPLPANYPLRSRIRHDLMPYLESFAGSDVVSKLALGARLAEDDRAYLDGVAQRVC 276 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + +TV+ II ++ + + D + ++ S A G Sbjct: 277 EQGVTVNNGEIIIDARALQSQDIAIRRRVIVRSLAEAG 314 >gi|318061598|ref|ZP_07980319.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actG] Length = 304 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 16/306 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+E + V+ + LR Sbjct: 5 VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 61 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAREARYA + A+ A I+ HT DDQ ETV + R Sbjct: 62 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEKHGAAAILLGHTRDDQAETVLLGLAR 121 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + + RPFLR R+ R + +++ +DP NTD + R Sbjct: 122 GSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDPAYTR 177 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-----TVHMRSIIAISQDI 256 R+R +L + + +++ A + + TV + Sbjct: 178 SRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADALDAWAARAAGTVRDEHGALDCAGL 237 Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + + +LR + GG + ++R++ + G+R G+V R Sbjct: 238 YALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDRLITAWR-GQRALNLPGKVEARRLG 296 Query: 314 NFLWIT 319 L I Sbjct: 297 GRLVIR 302 >gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46] gi|226695542|sp|B0UGN1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46] Length = 344 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 21/311 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG DS L+ ++ ++ +VDH LR + +E V+ + RL + Sbjct: 32 LAVSGGPDSTALMGCAAAL-----PPRVPVLVATVDHGLRPESGEEAAGVAALAGRLGLP 86 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 H +++W+ KP+T L AAR ARY L+ A+ A I+TAHT DDQ ETV MR Sbjct: 87 HRILTWRGEKPRTRLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAETVLMRLCAGS 146 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 G+ + L PFL + + + + DP N RF R R Sbjct: 147 GPAGLAGIAPARRLGGLLLGR---PFLDLPKARLVATCAAAGWPFAVDPGNAAARFARAR 203 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM--------RSIIAISQD 255 +RR + + L R++ N A + + R + + Sbjct: 204 LRRVMPLLAAEGLTPARLARLAARLRRNEAALAAAAEAARPSLAAAPAGPGRLALDAAGL 263 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSME-----RVMLFLKSGKRGCVSIGRVVID 310 ++ L L AA+ G+ +E R++ + +G +++G ++D Sbjct: 264 AALPEAVALRVLADAIAALRAGERRPERLERLEEALFGRILPAIAAGTPLRLTLGGALLD 323 Query: 311 RRANFLWITRA 321 L + Sbjct: 324 LAGGRLLLAPE 334 >gi|302553169|ref|ZP_07305511.1| hypoxanthine phosphoribosyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302470787|gb|EFL33880.1| hypoxanthine phosphoribosyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 358 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 13/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+ + V L Sbjct: 59 VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHGLQAGSDVRAAEVVLRLRELG 115 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + G AAAR+ARYA + A+ AT ++ HT DDQ ETV + R Sbjct: 116 LDPVDSVTVTVGRSGGPEAAARDARYAALDTAAERHGATAVLLGHTRDDQAETVLLGLAR 175 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + RPFL R+ R + +++ +DP N D + R Sbjct: 176 GSGIR--SLSGMAAVS--GADGRYRRPFLELDRQTARKACMVQSLPVWDDPHNADPAYTR 231 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQDI 256 R+R AL + + +++ A + + + + + Sbjct: 232 SRLRHEGLPALEKALGKGVVEALARTARLSRDDADALDSWADQAEAGVRDAAGLLECAKL 291 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSIGRVVIDRRANF 315 + + +LR +A G R +E V + +G +++ V+ RR Sbjct: 292 YALPPAVRRRVLRRAAIAAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVARRQGG 351 Query: 316 LWITR 320 + R Sbjct: 352 RLVIR 356 >gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] gi|299800072|gb|ADJ50447.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32] Length = 319 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 119/312 (38%), Gaps = 22/312 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ +L P + VAVSGG+DS+ L A V R A+ VDH L+E + Sbjct: 16 FLETLEAPPELCVAVSGGADSLALAEAAAYVGHHRGHV---VRALVVDHGLQEGSAKIAA 72 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + L + + V + G AAAR+ARY +++ H L++ HT DDQ Sbjct: 73 DAAAAAKALGVDEAEVRRADVTGAGGPEAAARKARYRVLAGH------DLVLLGHTLDDQ 126 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R + + + RP L R R+ + + +D Sbjct: 127 AETVLLGLGRGSGPRSVAGM-------RPHDPPWGRPLLAVGRATTRAACAELGVEPWDD 179 Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + RF RVR+R V + L+ +++ +N + + + Sbjct: 180 PHNAEPRFTRVRLRTEVLPLLEDVLNGGVAAALARTAAQLRDDNEALDTLAEEIFTRAGG 239 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGR 306 + L + + + + + L R+++ ++ + G+ G G Sbjct: 240 PDGLDVATLAPEPSAVRRRVLRRWLLASDVRELTDAHLRAVDALVARWR-GQGGVWLPGN 298 Query: 307 VVIDRRANFLWI 318 + R L + Sbjct: 299 LEARRAHGRLCV 310 >gi|319409313|emb|CBI82957.1| tRNA(Ile)-lysidine synthase [Bartonella schoenbuchensis R1] Length = 518 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 5/214 (2%) Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207 GLS + L + + RP L +R+ +R++L R I W +DP+N D RFERVRVR Sbjct: 202 RGLSCIAREALLRRKVRLIRPLLGIKRDSLRAYLRLRGIEWIDDPTNDDLRFERVRVRHS 261 Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLF 265 + D + K+ + R + +A LI + + R I + L F Sbjct: 262 IHFKDFSEVAQKVNEAALKRRQYAQMIADLILALDIVVEYGRCFIKRPEPFLCRHPGFPF 321 Query: 266 YLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323 ++ + A + GG L + + + L L S ++ ++ +I+ + R R Sbjct: 322 -VVGLFAVLMGGSPYLLASQKLSALNQKLCLHSLEKKRFTLAGSLIEYGQKGIAFWREAR 380 Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 N+ I+ P +T +WDGRYQ N +++ Sbjct: 381 NIQEAIILPGQTFLWDGRYQITNHERDALKVRAA 414 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 A SGG DS+ LL L + ++VDH LRE + E + V+++C +I H Sbjct: 2 AASGGGDSLALLFLLKDYFKTL-LSPPEIIVVTVDHQLREESACEAQKVAEICRAYQIKH 60 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +V W+ +KP+T + AR ARY L+ + A+ ATLIMT HT +DQ+ET YMR QR Sbjct: 61 VIVRWEGTKPKTDISQKARVARYDLLFQEAEKQGATLIMTGHTLNDQVETYYMRCQR 117 >gi|206896469|ref|YP_002247248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter proteolyticus DSM 5265] gi|206739086|gb|ACI18164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter proteolyticus DSM 5265] Length = 314 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 20/244 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I++AVSGG DSM LL +++H +R A ++V+ V L Sbjct: 22 IVLAVSGGKDSMVLLHLAKRF---EHHLPNNVVVATLNHGIRRDALEDVKLVVQCAQNLE 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V+ S R R A + + + A I TAH DD +ET+ +R R Sbjct: 79 FP--VIVGSLSPKSFCDENTLRSHRRAFLLDVMDQVKADRIWTAHHADDAVETMVLRLGR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 G GL G LYD ++P L EDI F + + + ED +N +ER Sbjct: 137 -----GAGLMGATSPKLYDD--PWAKPLLTVFSEDIEEFRRRFGVPFREDSTNLLTDYER 189 Query: 202 VRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++R + L ++K R V L+ + + ++ + Sbjct: 190 NKIRLELIPFWSELLGYDVRKTLFSSLTSMSVFREFVEEQGLCLLDQLTVERVPKMLKLR 249 Query: 254 QDIL 257 + Sbjct: 250 RKAF 253 >gi|294055282|ref|YP_003548940.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM 45221] gi|293614615|gb|ADE54770.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM 45221] Length = 483 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 104/301 (34%), Gaps = 15/301 (4%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79 +LVA SGG+DS+ LL L ++ ++ +H R + ++ R+V + Sbjct: 38 RVLVACSGGADSVFLLGIL---WANAELLGVELVVAHYNHRWRGSESDEDARFVEVMAKT 94 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L + + + K AR R + A N I H D LET R Sbjct: 95 LGCTYLTET-RPEKEAAFTETTARALRLDFLRRAATEANCDCIALGHQQGDILETQLQRI 153 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R +G L+ ++ RP L R D+R + + WCED SN D Sbjct: 154 ARGSGSEG--LAAPRPIHRFERYPPHVRPLLNMRSGDVRMAVAACGLPWCEDSSNDDLSI 211 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII----AISQD 255 R +RR + A+ + ++ A + +++ + +S+ Sbjct: 212 PRNALRRKWIPGLVDAVGRDVSTAAARTRQLLEEDADALEQFMRASFSREVLAADRLSRT 271 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 L L R +A G + +++ ++ + S + R Sbjct: 272 RLRASPRALSR--RALSAWLGNHGLMDSLSAAALDNLLDTVYSAQSESRQSAGEQFIRIR 329 Query: 314 N 314 Sbjct: 330 E 330 >gi|32266754|ref|NP_860786.1| hypothetical protein HH1255 [Helicobacter hepaticus ATCC 51449] gi|61216602|sp|Q7VGR5|TILS_HELHP RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|32262806|gb|AAP77852.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 423 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 84/241 (34%), Gaps = 13/241 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+ S G DS L L +I F V + R A DEV Y ++ + Sbjct: 39 LLGFSSGVDSTALFFLLLEC-------EIPFDIAIVHYHTRLQADDEVAYAKELAATYNK 91 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V + AR R+ + T ++ AH +D+LE + M+ + Sbjct: 92 LCFVAH--APHFNANFESNARSFRFDFFQSLIIKHHYTHLLLAHQLNDRLEWLLMQLTKG 149 Query: 143 YAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G L + YD N I RP + ++ F +R I + ED SN D F Sbjct: 150 AGL-GNLLGFADERYNYDKSLNNYTIVRPLESIPKNELYRFCKERGIKYFEDSSNQDKTF 208 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 R R D ++ + + + ++ ++ + I + I NI Sbjct: 209 RRNYFRYEFCDKLVNEFSAGIARSLSYLQRDRQSLENMLYADTLELESLKMQILRQIHNI 268 Query: 260 D 260 Sbjct: 269 S 269 >gi|288925835|ref|ZP_06419766.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae D17] gi|288337490|gb|EFC75845.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae D17] Length = 430 Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 19/207 (9%) Query: 50 KIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAARE 104 A + LR E +K + + +C+ I + + + + AAR Sbjct: 7 GYSVEAAHCNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARN 66 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 RY + I A I AH +D +ET+ + R +G L+GM N + Sbjct: 67 LRYHYFDQLRLAIGAKGICVAHHLNDNVETLLLNLIRGTGIQG--LTGMAS-----RNGF 119 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALY 217 + RP L R E+IR +L N ++ D +N +D R ++R V + + Sbjct: 120 VLRPLLDVRHEEIREYLHSINQAFVIDSTNLEDDVLRNKIRLNVIPMLEGLNPAVVDNIA 179 Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + D +V +++ + + V Sbjct: 180 KTIHNLVDAKVVLDDVTKQFMSHGVAV 206 >gi|11465849|ref|NP_053993.1| hypothetical protein PopuCp198 [Porphyra purpurea] gi|1723412|sp|P51383|TILS_PORPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1276849|gb|AAC08269.1| ORF327 [Porphyra purpurea] Length = 327 Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 18/293 (6%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG DS+ L+ L+ + F + + + I DH R + + V Sbjct: 29 VAFSGGQDSLTLVKLLYDL---NPFYRWRITLIHFDHRWRWDSMLASKQVFSFARYYNFP 85 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + A+R+ RY + + A N T I+ AHT D ET+ R Sbjct: 86 LYYFECPDY---LNTEEASRKWRYTTLIDLAVKNNFTKILLAHTATDSSETLLSNLFRGT 142 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + G+ G + +++I RP L R + F + + D SN D R R Sbjct: 143 SLDGLASIGW--SCQLAQSVYIVRPLLNFYRFETSWFCRKYYLPIWVDRSNYDYIMFRNR 200 Query: 204 VRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R+ + + ++ L V L + L ++ I I QD++ I+ T Sbjct: 201 LRQELVPYIKSYFQPNLEERCYSLSSLVKYDTDFLEQEALRIY---FILIHQDLIAINHT 257 Query: 263 LLFYL-LRVSAAI-----CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309 L L L V + I P R +E V++F+K +++ ++ Sbjct: 258 ALRLLHLSVQSRIFKIFFIANLNFNPNSRQIEDVIIFIKQNILSQINMNNYIL 310 >gi|187479043|ref|YP_787067.1| tRNAIle-lysidine synthetase ( cell cycle protein) [Bordetella avium 197N] gi|115423629|emb|CAJ50169.1| tRNAIle-lysidine synthetase (putative cell cycle protein) [Bordetella avium 197N] Length = 341 Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 121/334 (36%), Gaps = 32/334 (9%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 VR + L A + +A+S G+DS L +A + R A+ V H L+ A + Sbjct: 18 VRATLARLPSQAPVALALSAGADSAMLAVAARLLAPQR-----PLLALHVHHGLQAQADE 72 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + L + + K +G+ AAAR ARYA ++ A+ A ++ AH Sbjct: 73 WAQRAQALGGLLELPVRIAHVKVPADGSGIEAAARTARYAALAAMAREAGAGHVLLAHHR 132 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSFLLQR 184 DDQ ETV +R R +GM L RP+L R I ++F Sbjct: 133 DDQAETVLLRLLRGAGVEGMAAM---REASPRDGLLYLRPWLDLGRAAIVQAAQAFAALT 189 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 +DPSN D R+ R VR + + L + +Q + + + + V Sbjct: 190 GWQAVQDPSNVDPRYTRAAVRATLAPL----LNARWPGWQAIVSRHARQMGEAVEILREV 245 Query: 245 HMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + D + +LR G + +P + +M L+ Sbjct: 246 AREDYARLEPDEAGFALAPWRELSPPRQAQVLRYWLGAQG--LRMPSEARLRDLMRQLRQ 303 Query: 297 ------GKRGCVSIGRVVIDRRANFLWITRAVRN 324 ++ V+ I +W+ A Sbjct: 304 LHALGHDRQLRVAHEGHEIRCHRGRVWLAPAGAR 337 >gi|257463149|ref|ZP_05627550.1| cell cycle protein MesJ [Fusobacterium sp. D12] Length = 409 Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 103/299 (34%), Gaps = 28/299 (9%) Query: 38 ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLRIAHS----VVSWKNS 92 L + SF + + + H +R+ A +E + D + + V Sbjct: 3 MLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLFCLDYAKKKNLEIIARKMDVPSYAK 59 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 K L A R RY + K I TAH DD LET + R R + +G L+G Sbjct: 60 KEGQSLEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETFFFRLLRGSSMEG--LAG 117 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + RP + +I S+L + I++C+D +N + + R R+R + Sbjct: 118 ISRKQADK-----IRPLRDFEKAEILSYLERHQIAYCKDKTNEETEYSRNRIRLEL---- 168 Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLR 269 L L K+++ + + + ++ IS L + + Sbjct: 169 LPQLKSYNPKWKEKVASFMEELEERKEEEEGIDWKAYWKEGFISVTKLQKEKPYFRKKIL 228 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANFLWIT---RAVRN 324 + + + ++ L+ G + + + +W+ + RN Sbjct: 229 YKYLLSKQI--PINRKQIHQIFTLLEKGGSLSYDLKNFWKFKKEYDRIWVESLQKEERN 285 >gi|319442401|ref|ZP_07991557.1| hypoxanthine phosphoribosyltransferase [Corynebacterium variabile DSM 44702] Length = 538 Score = 153 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 98/271 (36%), Gaps = 22/271 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ++ VSGG DS+ L A + + ++VDH L++ + + Sbjct: 26 LHRGDAVVCGVSGGGDSLALAAACV-------HAGLAVTTVTVDHRLQDGSDRVAARAAQ 78 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L +VV+ P G AR ARY + E A + ++ AHT DD E + Sbjct: 79 QCRDLGATATVVTVDVDGPGEGP---ARAARYRALGEAA---DGRPVLVAHTADDDAEGL 132 Query: 136 YMRSQRDYAEKGM-GLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + R + GL + ++ ++ RP L R R + + +DP Sbjct: 133 LLSLTRGSGTGSLAGLREITGDHPVVDAGASFLGRPLLAATRRQTRGSCAELGLGIWDDP 192 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 N R RVR + + L ++ ++ A L+ + S + Sbjct: 193 HNEHPEILRSRVRHELLPVMREILGPRVDAALTRSARMLREDADLLDDQAAGALESAGVV 252 Query: 253 SQDIL------NIDSTLLFYLLRVSAAICGG 277 D L + + L +LR A G Sbjct: 253 PGDQLPVTVLADRPAPLRRRMLRDWLAGVAG 283 >gi|302559297|ref|ZP_07311639.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000] gi|302476915|gb|EFL40008.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000] Length = 341 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 13/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ ++VDH L+ + V + L Sbjct: 42 VLVACSGGADSMALASALAFEAPRLG---VRAGGVTVDHGLQAGSDLRAAEVVLRLTELG 98 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 99 LEPVESVAVTVGRDGGPEAAARDARYAALDAVAERHGACAVLLGHTRDDQAETVLLGLAR 158 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + RPFL+ R+ R + +++ +DP NTD + R Sbjct: 159 GSGIR--SLSGMAAVS--GADGRYRRPFLQVDRQTARKACMAQSLPVWDDPHNTDPAYTR 214 Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R + + + + L +A+ + + + L Sbjct: 215 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAGRAEAGVRDADGRLECAKL 274 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANF 315 + + AAI G + + + L +G +G +++ V+ RR Sbjct: 275 YELPPAVRRRVLRRAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVARRQGG 334 Query: 316 LWITR 320 + R Sbjct: 335 RLVIR 339 >gi|320101607|ref|YP_004177198.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644] gi|319748889|gb|ADV60649.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644] Length = 517 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 108/327 (33%), Gaps = 30/327 (9%) Query: 34 GLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 LL L + + + H LR A E V + L V W + Sbjct: 75 ALLRLLDAAIRA-GALDWSLTVAHFHHGLRGSQADAEADAVERLAHALGWPVVVERWSDP 133 Query: 93 KPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 A R AR ++ A A ++ AHT DDQ ETV R R +G+G Sbjct: 134 PQGIAPAEAPLRAARLEFLARVASHHQARAVVLAHTRDDQAETVLQRVLRGCGPRGLG-- 191 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR----- 206 G+ + + RP L R +R +L W +DP+NTD R +R Sbjct: 192 GIPPRRRLTQGVDLLRPLLEVPRACLRDWLTAIGQPWHDDPTNTDQHRTRAWIRHDLLPR 251 Query: 207 ---FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 V L + + L ++ + A L+ H+ + + +++D Sbjct: 252 ARRHVNPQADAHLARLARHARILCRRLEHDGARLLRTCWRDHLDESTSSEEARVSLDRIR 311 Query: 264 LFYLLRVS-------AAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 L R G + + R++ + G V R Sbjct: 312 LAAAPRWLRVEALRGLWRARGWPEADMTQRHWHKLARLVET-PQERSDHFPGGLRVRINR 370 Query: 313 ANFLWITRAVRNLPTLILYPEETTVWD 339 +F+ + + L L P E+ WD Sbjct: 371 NDFV-----ISHPCKLTLSPIESRAWD 392 >gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119870890|ref|YP_940842.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] gi|108772158|gb|ABG10880.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS] gi|119696979|gb|ABL94052.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS] Length = 320 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 61/276 (22%), Positives = 97/276 (35%), Gaps = 22/276 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E RF R L VA+SGG+DS+ L +L +A+ VDH L+ + Sbjct: 13 EVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPT--------TALIVDHGLQPDS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 RL A + V + G AAAR ARY + ++ H Sbjct: 65 AAVAETARAEALRLGCADAHVLRVDVGTSGGPEAAARTARYGALRAA---HGGAPVLLGH 121 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + +CD Y RP L RR + + + Sbjct: 122 TLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELGL 174 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 DP N+D R+ R R+R V + L + + + Sbjct: 175 HPWVDPHNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLDAQADAAL 234 Query: 247 RSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQ 278 + A + + + + + ++R G + Sbjct: 235 AEVTAGAGLDTARLAELPAAIRRRVIRSWLLAGGAR 270 >gi|297159327|gb|ADI09039.1| tRNA(Ile)-lysidine synthase [Streptomyces bingchenggensis BCW-1] Length = 375 Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 7/211 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ ++VDH L++ ++ V++ L Sbjct: 38 VLVACSGGADSMALASALAFEAPKLG---VRAGGVTVDHGLQDGSEVRAAEVAERLRLLG 94 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 95 LEPVECIGVSVGRDGGPEAAARDARYAALDTAAERHGAVAVLLGHTRDDQAETVLLGLAR 154 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFLR R+ +R L +++ +DP N D + R Sbjct: 155 GSGIR--SLSGMAQVS--GAGGRYRRPFLRLDRQTVRRACLAQSLPVWDDPHNVDPAYTR 210 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 RVR I AL + + +++ Sbjct: 211 SRVRHEALPILEKALGKGVVEALARTAQLSR 241 >gi|29831207|ref|NP_825841.1| cell cycle protein [Streptomyces avermitilis MA-4680] gi|61217336|sp|Q82EF1|TILS_STRAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|29608321|dbj|BAC72376.1| putative cell cycle protein [Streptomyces avermitilis MA-4680] Length = 345 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 74/319 (23%), Positives = 126/319 (39%), Gaps = 17/319 (5%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 R L P +LVA SGG+DSM L AL I+ I+VDH L+ + Sbjct: 34 RDVPHDLPPPPLVLVACSGGADSMALASALAFEAPKLG---IRAGGITVDHGLQSGSDLR 90 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V L + + G AAAR+ARYA + A+ A ++ HT D Sbjct: 91 ADEVVGRLVDLGLTPTESIAVTVGRDGGPEAAARDARYAALDAAARRHGACAVLLGHTRD 150 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 DQ ETV + R + LSGM RPFL+ R+ R + +++ Sbjct: 151 DQAETVLLGLARGSGIR--SLSGMAAVS--GTGGRYRRPFLQLDRQTARKACMAQSLPVW 206 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-----LTV 244 +DP N D + R R+R AL + + +++ A + + +V Sbjct: 207 DDPHNADPAYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDVWAGQAEASV 266 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGC 301 + + + + + +LR +A G G + ++R++ + +G Sbjct: 267 RDAAGLLECAKLYALPPAVRRRILRRAAIEAGAPAGSLFARHIEEVDRLITGWRG--QGA 324 Query: 302 VSIGRVVIDRRANFLWITR 320 +++ V+ +R + R Sbjct: 325 INLPGKVVAQRQGGRLVIR 343 >gi|11467837|ref|NP_050888.1| hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|11467908|ref|NP_050959.1| hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|61216751|sp|Q9T390|TILS_NEPOL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|5880766|gb|AAD54859.1|AF137379_82 hypothetical chloroplast RF62 [Nephroselmis olivacea] gi|5880837|gb|AAD54930.1|AF137379_153 hypothetical chloroplast RF62 [Nephroselmis olivacea] Length = 367 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 109/277 (39%), Gaps = 17/277 (6%) Query: 2 FLSPIESVRFF-----VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 +LS E +R F ++ LV P+ +L++ SGG DS+ LL L + ++ ++ + Sbjct: 33 YLSMREILREFEEACLLQGLVSPSTRLLISCSGGQDSVTLLFLLCQLQTNWTW---RLGV 89 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + +H R + + ++ +C ++ S+ S + R R ++ + Sbjct: 90 VYCNHMWRYGSIETPAKLARICLLFGVSC---SFSVSGSRLQKEEEGRSWRLRVLCRMSS 146 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-----CDTILYDLNLWISRPFL 170 + I T HT D++ET+ R + GM +++ I RP L Sbjct: 147 IHSWFYISTGHTASDRIETLLSNVLRGSSSSGMRSINWYTSLDTQVGHRRISIPIIRPLL 206 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 R ++R++ + + C DPSN D R R R+R + H ++ + +V Sbjct: 207 GISRLELRNYANRWKLPLCYDPSNQDQRIRRNRIRHELLPYLRHWWNPQIDRLLAQTAEV 266 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + + T + I + + + Sbjct: 267 TSWESSYYDLICTQICQQYEWIGDGGVRFPWRIFHSI 303 >gi|90994574|ref|YP_537064.1| hypothetical protein 327 [Porphyra yezoensis] gi|122194644|sp|Q1XDA4|TILS_PORYE RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|90819138|dbj|BAE92507.1| unnamed protein product [Porphyra yezoensis] Length = 329 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+S IE L Y + +LV+ SGG DS+ L+ L+ ++ K S I DH Sbjct: 11 FISTIEKNNL----LPYNSSLLVSFSGGQDSLALVKILYDF---KNIYNWKISLIHFDHR 63 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 R + + V ++ V + +R+ RY + A N Sbjct: 64 WRSDSMLVSKQVIKYAKMCNLS---VYYFECPKYLNTEETSRKWRYLTLINTAYVNNFNT 120 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+ AHT D+ ET+ R + G LS + + + + RP L C R + F Sbjct: 121 IVLAHTATDKAETMLSNLFRGTSLDG--LSSIHWSSQLSNAVHLVRPLLNCYRSETSWFC 178 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + D SN ++ R R+R+ + ++++ Y Sbjct: 179 RKYFLPVWIDQSNYNNSLSRNRLRQELIPYIKSYFQPQIEQ----------------KCY 222 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277 L + S+I++ D L ++ ++ L++ + Sbjct: 223 L---LSSLISLDVDFLEQEALRIYSLIQHEELLAMN 255 >gi|116074359|ref|ZP_01471621.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916] gi|116069664|gb|EAU75416.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916] Length = 342 Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 101/292 (34%), Gaps = 10/292 (3%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+AVSGG DSM L L + + DH + + Sbjct: 31 LPAGEPLLLAVSGGQDSMALTALLLGLS---RLHHWELHLWHGDHSWHPGSAAIASELQA 87 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + +V ++ A AR RYA ++ A + + ++ HT D+ ET+ Sbjct: 88 WSLGQGLPITVDRNAKNEATGRTEAEARRWRYAQLATCATALGSRVVC-GHTATDKAETL 146 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ R G+G + + + + + RP L R+D + N+ DPS Sbjct: 147 LLQLTRGTDLAGLGSLRRQRLLDAEQHPAVHLVRPLLGFNRDDTAAICRDLNLPLWLDPS 206 Query: 194 NTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 NT+ RF R R+R+ V + +M + +V + L+ L Sbjct: 207 NTNLRFSRNRIRQEVMPVLNDLYPGCEQRMAALSERLSQVQDTQQTLLALSLESLKAGEG 266 Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 A + + + L + A + P + + + Sbjct: 267 AENVLQRKRLGALPLPLRRDLLAHWLQSCGAPPLKAPLLEELARATAAGSPA 318 >gi|332295572|ref|YP_004437495.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796] gi|332178675|gb|AEE14364.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796] Length = 438 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 15/253 (5%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLRI 82 +A+SGG+DS+ L L + S K F + DH R+ E + + + Sbjct: 30 IAISGGADSVFLTYILSRLKS-----KDDFILLHFDHGWRKKDLILERNLIINYAEKYN- 83 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 ++ + + AR+ R+A IN+ ++ T H +D+ ET R Sbjct: 84 -FRIIFGSSGNTGSLNEEDARKRRFAFFCNIMDKINSNVLFTGHNLNDRFETFLWNICRG 142 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G + + + + + I P + +R+ IR+F + + D N D R++RV Sbjct: 143 TGIRG--ILSLKEIRQFGK-INIISPLIHLKRDKIRTFCEYLKLDYISDFYNDDIRYKRV 199 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 +R+ + + ++ F + L +T + + +S NI Sbjct: 200 FIRKEITPRIENVWQNSLEHFDSFIKLAEDEDCYLEK--ITNEIYGKVVLSMPWANI--I 255 Query: 263 LLFYLLRVSAAIC 275 LL LL+ A+ Sbjct: 256 LLKELLKFDIALI 268 >gi|13507961|ref|NP_109910.1| PP-loop superfamily protein ATPase [Mycoplasma pneumoniae M129] gi|2496288|sp|P75549|TILS_MYCPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|1674311|gb|AAB96257.1| PP-loop superfamily ATPase/cell cycle protein MESJ-like protein [Mycoplasma pneumoniae M129] gi|301633532|gb|ADK87086.1| tRNA(Ile)-lysidine synthetase [Mycoplasma pneumoniae FH] Length = 289 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 14/199 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VSGG DSM LL H ++ + V++ R TA + + V + C Sbjct: 2 PKTQYIAGVSGGPDSMLLLKLYHKKIA---------CVVHVNYNKRTTALRDQKMVEEYC 52 Query: 78 SRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 +L++ V + + A AR+ R+ + A ++ AH DD +E Sbjct: 53 KQLKVPLIVHTVPEDTVWKKNFQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAK 112 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ G+ T + + RPF++ + +I + + + + D +N Sbjct: 113 MQLDARKRAMYYGI----KTRGELYGMKVYRPFIKYWKNEILALCEEHKVPYGIDETNAQ 168 Query: 197 DRFERVRVRRFVRDIDLHA 215 ++R +VR+ + + Sbjct: 169 PIYKRNQVRQEIANWSKEE 187 >gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181] gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181] Length = 638 Score = 152 bits (385), Expect = 9e-35, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 55/258 (21%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+++ +AVSGG+DSM L + + +A VDH RE + E R V+ S Sbjct: 45 PSNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARNVATWLS 104 Query: 79 RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + ++ W + AR R+ + + + ++ H DD +ET Sbjct: 105 DMGLQAQILELEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLMGHHQDDNVETTL 164 Query: 137 MRS---QRDYAEKGM----------GLSGMCDT------ILYD----------------- 160 R R G+ GL G+ ++ D Sbjct: 165 WRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSLAILRPRDDRAGAPSALSGNTTTSQ 224 Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203 + + RP L + + + Q I + DP+N D R Sbjct: 225 VQGKDEGKQPGFSMATGGILLCRPLLAFPKASLLATCHQHRIPYVSDPTNFDPTLTPRNA 284 Query: 204 VRRFVRDIDLHALYLKMK 221 +R V L ++ Sbjct: 285 IRSLVSPSSPPLLPRALQ 302 >gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces sp. AA4] gi|302439687|gb|EFL11503.1| predicted protein [Streptomyces sp. AA4] Length = 348 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 122/316 (38%), Gaps = 17/316 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR F+ ++ P + VAVSGG+DS+ L A VL R ++ A+ VDH L+ + Sbjct: 35 AVRDFLATVAVPGEVCVAVSGGADSLALAEATAYVLRHR---DVRTRALVVDHGLQADSA 91 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V L + V + + G AAAR ARY + E A L++ HT Sbjct: 92 AVASEAATVVKGLGVDAVEVHAVHVVGKGGPEAAARAARYHALRE-ALPNGEGLVLLGHT 150 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + + + RP L R + + + Sbjct: 151 QDDQAETVLLGLGRGSGPRSLAGM-------RPHDPPWGRPLLGITRAQTVAACTELGLE 203 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHAL-YLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 +DP N D RF RVR+R + L ++ L VH Sbjct: 204 PWQDPHNADPRFTRVRLRTEALPLLEDVLSGGVAPALARTAAQLREDTEALDTLAARVHE 263 Query: 247 RSIIAISQD--ILNIDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCV 302 R++ D +L + L + + G L RS++ ++ + G+ G Sbjct: 264 RAVREDDLDVAVLAAEPAALRRRVLRRWLLDSGVRELTDAHLRSVDALVARWR-GQGGVW 322 Query: 303 SIGRVVIDRRANFLWI 318 G + RR L + Sbjct: 323 LPGNLEARRRRGRLSL 338 >gi|333025315|ref|ZP_08453379.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071] gi|332745167|gb|EGJ75608.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071] Length = 386 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 16/306 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+E + V+ + LR Sbjct: 87 VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 143 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAREARYA + A+ A I+ HT DDQ ETV + R Sbjct: 144 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEEHGAAAILLGHTRDDQAETVLLGLAR 203 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + + RPFLR R+ R + +++ +DP NTD + R Sbjct: 204 GSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDPAYTR 259 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-----TVHMRSIIAISQDI 256 R+R +L + + +++ A + + TV + Sbjct: 260 SRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADALDAWAARAAGTVRDEHGALDCAGL 319 Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + + +LR + GG + ++R++ + G+R G+V R Sbjct: 320 YALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDRLITAWR-GQRALNLPGKVEARRLG 378 Query: 314 NFLWIT 319 L I Sbjct: 379 GRLVIR 384 >gi|238499739|ref|XP_002381104.1| PP-loop family protein [Aspergillus flavus NRRL3357] gi|220692857|gb|EED49203.1| PP-loop family protein [Aspergillus flavus NRRL3357] Length = 637 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 84/265 (31%), Gaps = 67/265 (25%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S +P + +AVSGG+DSM L L I +A VDH RE + E VS Sbjct: 34 SRPFPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVS 92 Query: 75 DVC---------------------SRLRIAHSVV------SWKNSKPQTGLMAAAREARY 107 +L + ++ S K+ T AR R+ Sbjct: 93 QWLQDIGIYASPYTLAFNTKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRLRF 152 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------- 160 + + + ++ H DD +ET R KG GL+G+ + Sbjct: 153 QALGKACRDRQIEALLMGHHQDDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYG 210 Query: 161 -----------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + I RP L + + + + NI + D Sbjct: 211 VSESGSSYTIPSRPQRSSAQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSD 270 Query: 192 PSNTDDRFE-RVRVRRFVRDIDLHA 215 P+N D R +R + + L Sbjct: 271 PTNFDPTLTPRNAIRSLLAEDKLPK 295 >gi|78211629|ref|YP_380408.1| MesJ-like protein [Synechococcus sp. CC9605] gi|78196088|gb|ABB33853.1| possible MesJ [Synechococcus sp. CC9605] Length = 334 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 12/287 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + +L+AVSGG DSM L + + DH + + +S Sbjct: 29 LPKGSSLLLAVSGGQDSM---ALLALLQDLAPLHGWGLNLWHGDHGWHDNSSRIAAELSS 85 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + +++ V + + + A AR+ RY +++ A ++ T HT D+ ET+ Sbjct: 86 WCKQRQLSLQVD--QAAPGEVPSEAKARQWRYERLAQRGNQAGADVV-TGHTASDRAETM 142 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ R G+ + + + RP L +R D + EDPSN Sbjct: 143 LLQLARGSDLAGLAALPSVRPLSPE-GPRLRRPLLHLQRRDTLQICRDLALPIWEDPSNQ 201 Query: 196 DDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 F R R+R+ V + ++ + +V ++ L L + + Sbjct: 202 SPEFARNRIRQEVLPVLEELHPGCSQRISDLAERVSQVRDSQTELSQMALELLQTAAGLD 261 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + + + S LL G + P + + L+SG Sbjct: 262 RRGLGALSSATRRLLLAQWLQQQG--VPAPPASQLNELSRRLESGAP 306 >gi|126728389|ref|ZP_01744205.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata E-37] gi|126711354|gb|EBA10404.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata E-37] Length = 475 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 87/431 (20%), Positives = 146/431 (33%), Gaps = 73/431 (16%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +P+ I +AVSGG DSM +L H ++ ++V+H RE A E V+ C Sbjct: 24 FPSEIGLAVSGGGDSMAMLALAHGWA---RVFGVRLWVVTVNHGFREEAAAEAEMVAAEC 80 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + L H+ + W + M AAREAR LI+ + ++ AHT DD ET M Sbjct: 81 AVLGWPHASLHW-SWDGHGNAMEAAREARVRLIAGWRGRL--RHVLMAHTQDDVAETFLM 137 Query: 138 RSQRDYAEKGM-----------------GLSGMCDTILYDLNLW---------------- 164 R R G+ L+ M Sbjct: 138 RLARGSGVDGLSKMQARRVVDQPRLGVGALAPMLGEAPAAEGCRYPVIVTADGTAGRDAG 197 Query: 165 -----------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR---- 209 I RP L RR D+R ++ + + +DPSN + + R R+R + Sbjct: 198 VDWWVEGETFEILRPCLAMRRADLRHYVRVLQVPFVDDPSNENPAYARARIRAALPGLSG 257 Query: 210 -DIDLHALYLKMKKFQDLRVKVNNAVAMLIP------KYLTVHMRSIIAISQDILNIDST 262 +D+ L ++ R + A ++ ++ + Sbjct: 258 LGLDVPTLAATAERMARARNALRLQAADAWERIGHEARHRGAATGDLLLERDGFAGLPRE 317 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 + LL + G + P +E V+ + SG G + I + + R Sbjct: 318 VQLRLLAAAIGFVSGTVRRPRAARLEEVLDRVLSGGGGTLGG--CEILAERTHIRVFREY 375 Query: 323 RNLPTLILYPEETTVWDGRYQFQN------LSDSLIQIGPQSYRKADVPSGIPPIIAQRA 376 L + + +WDGR+ L +G ++ + + RA Sbjct: 376 AALEAMAGNDDP--LWDGRWLLTPEARQKMGPVRLRPLGDAGWQS--LSREEREGLTYRA 431 Query: 377 LSSMPSKEGGK 387 S+P G Sbjct: 432 ARSLPMVATGA 442 >gi|307327055|ref|ZP_07606245.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113] gi|306887353|gb|EFN18349.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113] Length = 367 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG+DSM L AL + ++ ++VDH L++ + V+D L Sbjct: 59 VLAACSGGADSMALASALAF---EAPRAGLRAGGVTVDHGLQQGSDARAAEVADRMRALG 115 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +A + G AAAR+ARYA + A+ AT ++ HT DDQ ETV + R Sbjct: 116 LAPVEAIAVSVGRGGGPEAAARDARYAALDGAAERHGATAVLLGHTRDDQAETVLLGLAR 175 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + RPFL+ R +R L +++ +DP N D + R Sbjct: 176 GSGTR--SLSGMAWVS--GADGRYRRPFLQLDRHTVREACLAQSLPVWDDPHNVDPSYTR 231 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 RVR I AL + + +++ Sbjct: 232 SRVRHEALPILEKALGKGVVEALARTAQLSR 262 >gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium nitrogenifigens DSM 19370] Length = 322 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 124/311 (39%), Gaps = 18/311 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + +AVSGG DS +L+ F+ +VDH LR + E V Sbjct: 21 RIFPEGTPVGLAVSGGPDS-----LALLLLAHAVLPAQGFAVATVDHGLRAESAGEAAMV 75 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + +C+ IAH + + P + + AR ARY + + T ++TAH DDQ E Sbjct: 76 AHLCAERGIAHDTLRISLA-PGSAIQERARAARYRALEDWRVGRGLTALVTAHHADDQAE 134 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ MR R +G+ + + + RP L R D+ + L R I+ +DPS Sbjct: 135 TLVMRLNRGAGLRGLAAMRARVPVPGGEGV-LLRPLLGWARADLAALLGDRGIAAVDDPS 193 Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N D RFERVRVR + ID L + + L + I Sbjct: 194 NRDVRFERVRVRMGLGGADWIDPAGLAQAADHLAEADAALEWVADRLAAGFGG--DEGEI 251 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310 A+ ++L TL A GG+ P R + R L G+ ++ + D Sbjct: 252 ALPDEVLPRTLTLRLL--ERVIARLGGKT--PRGRDLARWHDRLAQGEVA--TLAGIRGD 305 Query: 311 RRANFLWITRA 321 R TRA Sbjct: 306 GRTRPWRFTRA 316 >gi|72163296|ref|YP_290953.1| helix-turn-helix, Fis-type [Thermobifida fusca YX] gi|123628619|sp|Q47KU2|TILS_THEFY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|71917028|gb|AAZ56930.1| helix-turn-helix, Fis-type [Thermobifida fusca YX] Length = 324 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 67/274 (24%), Positives = 101/274 (36%), Gaps = 15/274 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR +R L + +LVA SGG DS+ L A V ++ ++VDH L+E + Sbjct: 14 AVRRALRDLPAGSLVLVACSGGPDSLALAGATAFVAPRLG---LRAGGVTVDHGLQEGSA 70 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V+ + L G AAAR ARYA + + A A ++ HT Sbjct: 71 ERADTVAALLRNLGFDPVERVSVTVGTAGGPEAAARSARYAALEKTADVHQAAAVLLGHT 130 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + + RPFL R + Sbjct: 131 RDDQAETVLLRLARGSGARSLAAMAT-------RTGRYLRPFLDVDRRTVHEAASLMGFE 183 Query: 188 WCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 DP NTD + R RVR + + + + + L +A+ + Sbjct: 184 PWSDPHNTDPAYTRSRVRHEALPVLERVLGPGITEALARTATLLRDDADALDAWADQAQQ 243 Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG 276 R A+ L + + LLR A G Sbjct: 244 QVGRGPTALDAAGLAGLPRAIRTRLLRRIALAAG 277 >gi|332526282|ref|ZP_08402411.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2] gi|332110116|gb|EGJ10744.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2] Length = 429 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 112/302 (37%), Gaps = 22/302 (7%) Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL---RIA 83 SGG DS LL A + ++ A+ V H L +A + + C+R + Sbjct: 10 SGGRDSTALLHATARAARELG---LEVHALHVHHGLVASADIWLAQLRAQCARWARSGLP 66 Query: 84 HSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + + + A AR RYA ++ A+ L++ A DQ ET+ +++ Sbjct: 67 LHFHATRLAGAPARGESVEAWARRERYAALAAMAQAAGCDLVLLAQHRRDQAETLLLQAL 126 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + L+ M D +W +RP+L RE+I ++L + + W +D SN D+ F Sbjct: 127 RGGGAE--ALAAMPRRAERDGLVW-ARPWLDRPREEIEAYLRRHRLRWLDDESNDDEAFA 183 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-- 258 R R+RR V L A ++ + A A L K L S +A L+ Sbjct: 184 RNRLRRQVWPALLAAFPEAEQQLAASARRAAEAAAAL--KVLADIELSALAEDDGPLDVA 241 Query: 259 ----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314 + T +LR + R+ L + + Sbjct: 242 GWRGLPETHRAPVLRRWLQSVLARPVPESLVR--RLADELPAAASARWPAPGGELRLHDA 299 Query: 315 FL 316 L Sbjct: 300 RL 301 >gi|227489338|ref|ZP_03919654.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090711|gb|EEI26023.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51867] Length = 270 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 32/298 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 V +SGG DS+ L AL + + +A+ +DH L++ +++ + + Sbjct: 2 AVGLSGGPDSLALTAALVA-------EGVHVTALCIDHGLQDGSREVSEEAARIARSWGA 54 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V+ P +AAR+ARY +E + AHT DD ET + R Sbjct: 55 EARVIPINVDPPT---ESAARQARYRAFAEW-----GGPVCVAHTMDDLAETFLIAGLRG 106 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GM +T + I RP L RR D + + ++ DP N D F RV Sbjct: 107 MT------CGMRETAEVE-GAQIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADPAFTRV 159 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 RVRR V + + D + A + + + ++ Sbjct: 160 RVRREVLPLLGDIVG------GDAVPALAQAARRTQAEATRMTAT---TVPLATKDLPEA 210 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 ++ + G ++S P +++++ G+ G +V R ++ + I Sbjct: 211 TRQDIIAGALRAAGAKVSKPHVEGVDKLLTEWH-GQGPRDVGGGLVALRVSDAIKIEE 267 >gi|237654058|ref|YP_002890372.1| tRNA(Ile)-lysidine synthetase [Thauera sp. MZ1T] gi|237625305|gb|ACR01995.1| tRNA(Ile)-lysidine synthetase [Thauera sp. MZ1T] Length = 451 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 104/323 (32%), Gaps = 16/323 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + + A+SGG DS+ L L + F A VDH L A R ++ C Sbjct: 26 SRVCCALSGGVDSVVLFELLRRLQPRFGF---SLRAAHVDHGLSPNAAAWARACAERCLA 82 Query: 80 LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 + V + + GL AAAR A ++ + H DDQ ET+ R Sbjct: 83 AGVPLQVFRVEVERAHADGLEAAARAA----RHAALAQVDCDWLAFGHHQDDQAETLLFR 138 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R G + + R + + + W ED SN + R Sbjct: 139 LLRGTGVHGAAAMRAVEPGGAGRAGRLRPLLGLRR-AQLLEWAGAHGLGWVEDESNAELR 197 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDI 256 F R +R + + + A A+L + + + D+ Sbjct: 198 FTRNALRHRLLPVAEGLFPAAVPNLARAAAHFAEADALLGELAAIDAAACGAPVLCRADL 257 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVIDRRA 313 L + LLR G LPG + + L++ + +G V Sbjct: 258 LALTPARQANLLRWLLL--GSGAPLPGAAPLGEALRQLRACEPAHPLRLPLGAWVCCAYR 315 Query: 314 NFLWITRAVRNLPTLILYPEETT 336 + +W+ A P + + E Sbjct: 316 DRVWLEPAQPPAPQALHWQGEAA 338 >gi|118475434|ref|YP_892513.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. fetus 82-40] gi|118414660|gb|ABK83080.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. fetus 82-40] Length = 336 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 ++ L+A S G+DS L L+ I+F +++ R + +E ++ Sbjct: 9 LHHKKCLLAFSYGTDSTALFHILNE-------KNIEFDCAFINYKTRVQSDEEEVSAKEL 61 Query: 77 CSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C + + ++ N + + AR+ R+ E N ++ AH +D LE + Sbjct: 62 CLKFNKNIYIKIAPLNLENGSNFEKKARDIRHKFFDEICIKFNYDTLILAHQLNDCLEWL 121 Query: 136 YMRSQRDYA-EKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCE 190 +M+ + + GL I N+ + RP + R +I S+L Q+NI++ Sbjct: 122 FMQLSKGSGTVQLCGLEPTNTKIAEFENIKKQISVIRPLINVSRNEIISYLKQKNINYFT 181 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKY 241 D SN D +F+R +R D + +K F+ LR + I + Sbjct: 182 DISNFDFKFKRNFIRANFSDAFIEKFEKGVIKSFEFLRADRTALLGEFIYED 233 >gi|329723928|gb|EGG60453.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU144] Length = 166 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQLET Sbjct: 67 QQHHIDIYIKRLDLSDIVAAGNSIQQEARQCRYEWFGDIIAQLRADVLLTAHHLDDQLET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRR 174 + R + + +G++ Y + RP L ++ Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKK 163 >gi|86157919|ref|YP_464704.1| tRNA(Ile)-lysidine synthetase-like [Anaeromyxobacter dehalogenans 2CP-C] gi|85774430|gb|ABC81267.1| tRNA(Ile)-lysidine synthetase-like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 451 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 121/331 (36%), Gaps = 16/331 (4%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E+ R R L PA +LVA+SGG+DS + + + A+ +DH LR Sbjct: 14 LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRT 69 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ E C+RL + + A AR RYA + E A +T I T Sbjct: 70 GSEPEAASARGACARLGVPLEERRLAVKA--GNVQAEARRVRYAALREAAARAGSTRIAT 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DQ ETV +R R +G+ + + RP + RE+ ++L Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGEVIRPLIDRTREEGNAYLRAL 180 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +DP+N R+ R R+R + + L A+ + + + + Sbjct: 181 GLGWGDDPTNAAPRYARNRLRLELWPL-LRAVAPAADRALARAADLAREDERALDRRARA 239 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303 A+ L + + + G R + V+ L+ G+ G + Sbjct: 240 VAGDGAAVDLAALRGEPIAVRRRVVRRLWRAATGSGRALEARHVAAVLALLRRGRPGETA 299 Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 + R A P + P E Sbjct: 300 LPGGRRARCRYGRLELLAGPGAPAPEVAPVE 330 >gi|12044936|ref|NP_072746.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37] gi|1351480|sp|P47330|TILS_MYCGE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3844671|gb|AAC71302.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37] gi|166078989|gb|ABY79607.1| tRNA(Ile)-lysidine synthetase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 290 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 32/298 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + VSGGSDSM +L + K + V++ R T+ + + V Sbjct: 1 MASEKQYIAGVSGGSDSMLMLKL---------YQKKIACVVHVNYNTRSTSLRDQKLVEQ 51 Query: 76 VCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 C +L I V + + AR+ R+ + AK ++ AH DD +E Sbjct: 52 YCQKLNIPLVVHTVDPDLVWKKNFQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQ 111 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ G+ C+ L I RP ++ +++I + Q +I + D +N Sbjct: 112 AKMQLDAKKRAVYYGIKTRCELY----GLKIYRPLMKYWKDEIIALCRQDHIPYEIDETN 167 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253 ++R VR + ++ ++F +N +A + + + ++ Sbjct: 168 KLPIYKRNEVRLEIEKWSK----IEKEQFYIAICAMNKTIAQKLFVLMKKAKKWLLQPDV 223 Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 I++ + YL+ + G ++ ++ F++ ++ + Sbjct: 224 RELKRFSIIDQKQLIYSYLIYHKINVNG--------EKIDAILDFIQPSQQKQYRLQN 273 >gi|300859211|ref|YP_003784194.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41] gi|300686665|gb|ADK29587.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41] Length = 290 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 115/313 (36%), Gaps = 34/313 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V ++V +SGG DS+ L+ AL + K + A+ VDH L+ + Sbjct: 12 ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVA-------EKYQVLAVCVDHDLQPGSN 63 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +D RL +VV + L A AR ARY + + K ++ HT Sbjct: 64 RVAEHAADTVRRLGAQATVVRVDVDRNG-SLEANARRARYEALRKFGKP-----VVVGHT 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD ET+ + + R A + + + RPFL RR D + + Sbjct: 118 ADDHAETLLLGALRGKAAGML------------VQGTVWRPFLTVRRADTVGACEELGLE 165 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 DP N F RV +R+ V + + D + A + +H+ Sbjct: 166 PWNDPHNNQKEFRRVAIRQQVLPLLADIIG------GDPVPALARAATNIAHDDEALHVS 219 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 A +++ L G ++ ++ER++ V G Sbjct: 220 D--ATLEELEAAHPAFRRRYLTAFLHKNGAPVTGANIDAIERLVTDWHGQGGIAVGNGLE 277 Query: 308 VIDRRANFLWITR 320 VI + L R Sbjct: 278 VIRKDGKLLSKER 290 >gi|296271399|ref|YP_003654031.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833] gi|296094186|gb|ADG90138.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833] Length = 325 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 17/318 (5%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L + +L A SGG+DS L ++ ++ ++VDH L+E + Sbjct: 13 AVRLSLAGLRPGSLVLAACSGGADS---LALAAALGFCAPRLGLRAGLLTVDHGLQEGSD 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 R V+ + L + + V G AAAR+ARYA +S A+ + A ++ HT Sbjct: 70 QRAREVAALAPELGLEPAEVLTVVVGRAGGPEAAARDARYAALSAAARRLGAVAVLLGHT 129 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + L+GM ++ RPFL R R + Sbjct: 130 RDDQAETVLLRLARGSGSR--SLAGMA-----PVSGIYRRPFLGLSRARTREACAALGLR 182 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 EDP N+D + RVRVR+ V + AL + + ++ A + ++ Sbjct: 183 PWEDPHNSDPAYARVRVRKRVIPVLEEALGPGVVEALARTARLCRDDADALDEWADAVYA 242 Query: 248 SIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRG 300 ++ ++ + + ++ +A G S G +E + G++G Sbjct: 243 KARGPEGELAVDVLESVPAAVRRRVIHRAALAAGVPASALGAVHIEEAERLVTGWHGQKG 302 Query: 301 CVSIGRVVIDRRANFLWI 318 V G+ + RR L+ Sbjct: 303 VVLPGKKRVVRRYGTLYF 320 >gi|302206900|gb|ADL11242.1| tRNA(Ile)-lysidine synthase MesJ [Corynebacterium pseudotuberculosis C231] gi|302331467|gb|ADL21661.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis 1002] gi|308277154|gb|ADO27053.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis I19] Length = 280 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 115/313 (36%), Gaps = 34/313 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V ++V +SGG DS+ L+ AL + K + A+ VDH L+ + Sbjct: 2 ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVA-------EKYQVLAVCVDHDLQPGSN 53 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + +D RL +VV + L A AR ARY + + K ++ HT Sbjct: 54 RVAEHAADTVRRLGAQATVVRVDVDRNG-SLEANARRARYEALRKFGKP-----VVVGHT 107 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD ET+ + + R A + + + RPFL RR D + + Sbjct: 108 ADDHAETLLLGALRGKAAGML------------VQGTVWRPFLTVRRADTVGACEELGLE 155 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 DP N F RV +R+ V + + D + A + +H+ Sbjct: 156 PWNDPHNNQKEFRRVAIRQQVLPLLADIIG------GDPVPALARAATNIAHDDEALHVS 209 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 A +++ L G ++ ++ER++ V G Sbjct: 210 D--ATLEELEAAHPAFRRRYLTAFLHKNGAPVTGANIDAIERLVTDWHGQGGIAVGNGLE 267 Query: 308 VIDRRANFLWITR 320 VI + L R Sbjct: 268 VIRKDGKLLSKER 280 >gi|294786616|ref|ZP_06751870.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305] gi|315226203|ref|ZP_07867991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Parascardovia denticolens DSM 10105] gi|294485449|gb|EFG33083.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305] gi|315120335|gb|EFT83467.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Parascardovia denticolens DSM 10105] Length = 408 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 17/196 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + I+ A +DH L+ + ++ C +L Sbjct: 45 VLVACSGGRDSLALAYVARIVCASWG---IRCGAAIIDHQLQADSGQVADQTAEQCRKLG 101 Query: 82 IAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +A VV K G+ AAAR+ RY +++ A+ + ++ AHTF DQ ETV + Sbjct: 102 LAPVVVRKVQVKDPHGQGMEAAARQTRYQALTDLARHEGSRCLLLAHTFTDQAETVALGL 161 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDD- 197 R L+G+ D ++ I RPFL+ R+D + ++W +DP+N + Sbjct: 162 LR--HPDLRALAGIPARTEKD-SVLILRPFLKAISRQDTEAICRAAGLAWWDDPANGEAS 218 Query: 198 ------RF-ERVRVRR 206 + R R+R+ Sbjct: 219 LGPLPGDYPLRSRIRQ 234 >gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4] gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4] Length = 665 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 132/335 (39%), Gaps = 40/335 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVL----SDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 + +++ VSGGSDSM LL L + S K+K + I++DH + +++ Y+S Sbjct: 170 KSTLVIGVSGGSDSMVLLYLLKNWCIGENSANVNRKLKITVITIDHKMTNPVAEDIPYIS 229 Query: 75 DVCSRL----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + ++L +I H VV + + + R R ++ + LI Sbjct: 230 KIINQLINNDNNSNFIKIKHKVVEIDEQRCKQ--QVSLRNQRIEILMSESVGNGNNLIFY 287 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 +DQ+ET R ++ G+ I ++ + RP L + +I F +R Sbjct: 288 GTNLNDQMETFIQRINKNSGLDGLAAMTKITKISNTHSVLLVRPLLDFSKLEILDFCSER 347 Query: 185 NISWCEDPSNTDD-RFERVRVRRFVRD-------------IDLHALYLKMKKFQDLRVKV 230 +I + DP+N D + R + R +RD I+L + + ++ + Sbjct: 348 SIQYFNDPTNDDPVSYSRNKTRHQLRDFKEFSIESPLSTTINLKQFLSGLTPIRMIKDQT 407 Query: 231 NNAVAMLIPKYLTVHMRS---------IIAISQDILN-IDSTLLFYLLRVSAAICGGQIS 280 + + ++ L ++ +I + N + T+ LL + I + S Sbjct: 408 DKVLQKMLNDILELNEHKNNIRDLRLPLIRVPLKYYNSLPPTIQSRLLHRLSCIISNEFS 467 Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315 + +++ LK +S ++ I NF Sbjct: 468 FFQQKKYNQIVNSLKQKPNIPISSHKLFIYNEKNF 502 >gi|254994427|ref|ZP_05276617.1| hypothetical protein LmonocytoFSL_16702 [Listeria monocytogenes FSL J2-064] Length = 153 Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS+ LL L + K S ++H LRE A +E V C Sbjct: 20 SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANEQNVVEAFC 76 Query: 78 SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + Q G+ AR RY + + AH DDQ+E Sbjct: 77 ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136 Query: 134 TVYMRSQRDYAEKGM 148 T+ MR R A G Sbjct: 137 TILMRLVRGSASIGW 151 >gi|282875439|ref|ZP_06284311.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135] gi|281295796|gb|EFA88318.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135] Length = 166 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 AHI+VAVS G DSM LL S+L+D K + + V+H LRE + +E ++ + C Sbjct: 10 KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66 Query: 78 SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I + S + AR+ RY + + A +++TAH DDQLET Sbjct: 67 HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQLET 126 Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRR 174 + R + + +G++ Y + RP L ++ Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKK 163 >gi|61216540|sp|Q6NF90|TILS_CORDI RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase Length = 292 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 118/312 (37%), Gaps = 33/312 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V P I V +SGG+DS+ L+ AL + A+ VDH L+ + Sbjct: 14 ACRVAVRT-VQPRDITVGLSGGADSLALVAALCA-------EDYNVHALCVDHGLQPGSH 65 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + ++S + L A AR ARY + ++ HT Sbjct: 66 EVAQQAAHHARTFGAHAEIISVTVAP--GNLEANARTARYQALHS-----RNLPVVVGHT 118 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R A ++ NLW RP L RR + + I Sbjct: 119 ADDQAETLLLGALRGKA---------TGMQIHTDNLW--RPLLGVRRATTLAACTELGIE 167 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 DP N + F RV +R V + + D ++ A ++ +H+ Sbjct: 168 PWHDPHNANTDFLRVALRTQVVPLLSDIIG------GDAVPALSQAATLIAEDTHALHVD 221 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + + + L L G ++S R+++ ++ G++ + Sbjct: 222 TPDDRIAQLAGMPPALRRRHLVALLQAYGARVSAAHLRAVDALITNWH-GQKAVPVGNGL 280 Query: 308 VIDRRANFLWIT 319 + R+ L ++ Sbjct: 281 EVTRKDGRLSVS 292 >gi|282866364|ref|ZP_06275409.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE] gi|282558760|gb|EFB64317.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE] Length = 359 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL + ++ I+VDH L+ + V + +R Sbjct: 60 VLVACSGGADSMALASALAF---ESRKLPVRAGGITVDHNLQPGSGLRAAEVVARLTEMR 116 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + + A+ A ++ HT DDQ ETV + R Sbjct: 117 LDPVEAVAVHVGRDGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLLGLAR 176 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R + +++ +DP N D + R Sbjct: 177 GSGIR--SLSGMASASGPAGRYR--RPFLQLDRQTARKACMVQSLPVWDDPHNIDPAYTR 232 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDIL 257 R+R AL + + +++ A + + RS+ + L Sbjct: 233 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAARSVRDDDGRLECAGL 292 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 I + + A I G + + + L +G RG +I GRV + R+ Sbjct: 293 AILPPAVRRRVVRRAVIDAGSPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEVRRQGG 352 Query: 315 FLWIT 319 L I Sbjct: 353 RLVIR 357 >gi|319777782|ref|YP_004137433.1| tRNA(ile)-lysidine synthase [Mycoplasma fermentans M64] gi|318038857|gb|ADV35056.1| tRNA(Ile)-lysidine synthase [Mycoplasma fermentans M64] Length = 296 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DSM LL + ++ K + +++ R + +V V + C + I Sbjct: 3 ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 55 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ +TG AR+ R + ++ NA+ I+ AH DD LE+ +M+ Sbjct: 56 DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 115 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ T +Y I RPF+ +++I + + + D +N + Sbjct: 116 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 171 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R + R ++ + + + + ++ + + + I ++D Sbjct: 172 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 229 Query: 261 STLLFYLLRVSA 272 + L+R Sbjct: 230 YEIQEQLIRKFI 241 >gi|308190379|ref|YP_003923310.1| cell cycle protein [Mycoplasma fermentans JER] gi|307625121|gb|ADN69426.1| cell cycle protein [Mycoplasma fermentans JER] Length = 304 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DSM LL + ++ K + +++ R + +V V + C + I Sbjct: 11 ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 63 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ +TG AR+ R + ++ NA+ I+ AH DD LE+ +M+ Sbjct: 64 DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 123 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ T +Y I RPF+ +++I + + + D +N + Sbjct: 124 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 179 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R + R ++ + + + + ++ + + + I ++D Sbjct: 180 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 237 Query: 261 STLLFYLLRVSA 272 + L+R Sbjct: 238 YEIQEQLIRKFI 249 >gi|238810161|dbj|BAH69951.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 307 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ +SGG DSM LL + ++ K + +++ R + +V V + C + I Sbjct: 14 ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 66 Query: 83 AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + ++ +TG AR+ R + ++ NA+ I+ AH DD LE+ +M+ Sbjct: 67 DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 126 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200 G+ T +Y I RPF+ +++I + + + D +N + Sbjct: 127 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 182 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 R + R ++ + + + + ++ + + + I ++D Sbjct: 183 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 240 Query: 261 STLLFYLLRVSA 272 + L+R Sbjct: 241 YEIQEQLIRKFI 252 >gi|38234568|ref|NP_940335.1| hypothetical protein DIP2004 [Corynebacterium diphtheriae NCTC 13129] gi|38200831|emb|CAE50535.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length = 280 Score = 150 bits (379), Expect = 4e-34, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 118/312 (37%), Gaps = 33/312 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ V P I V +SGG+DS+ L+ AL + A+ VDH L+ + Sbjct: 2 ACRVAVRT-VQPRDITVGLSGGADSLALVAALCA-------EDYNVHALCVDHGLQPGSH 53 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + ++S + L A AR ARY + ++ HT Sbjct: 54 EVAQQAAHHARTFGAHAEIISVTVAP--GNLEANARTARYQALHS-----RNLPVVVGHT 106 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R A ++ NLW RP L RR + + I Sbjct: 107 ADDQAETLLLGALRGKA---------TGMQIHTDNLW--RPLLGVRRATTLAACTELGIE 155 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 DP N + F RV +R V + + D ++ A ++ +H+ Sbjct: 156 PWHDPHNANTDFLRVALRTQVVPLLSDIIG------GDAVPALSQAATLIAEDTHALHVD 209 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307 + + + L L G ++S R+++ ++ G++ + Sbjct: 210 TPDDRIAQLAGMPPALRRRHLVALLQAYGARVSAAHLRAVDALITNWH-GQKAVPVGNGL 268 Query: 308 VIDRRANFLWIT 319 + R+ L ++ Sbjct: 269 EVTRKDGRLSVS 280 >gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10] gi|150843338|gb|EDN18531.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10] Length = 627 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 84/473 (17%), Positives = 151/473 (31%), Gaps = 125/473 (26%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDR----------SFGKIKFSAISVDHCLRETAKDEVR 71 + +AVSGG DSM L + + GKI F A+ V+H +R+ + +E + Sbjct: 36 VGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKIDFRAVIVNHGVRDGSLEEAQ 95 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINATLIMTA 125 V V L + +++ + + AR+ R+ I ++ + + + I+ Sbjct: 96 KVMGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISSILLG 155 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--------------------------- 158 H DDQ ETV MR + +G+GL G+ + Sbjct: 156 HHADDQAETVLMRLAKGA--RGVGLLGIKSSSPIPECEGIYGVHESGNPITLALPIKSKQ 213 Query: 159 ---------------YDLNLWISRPFLRC--------------RREDIRSFLLQRNISWC 189 + P L +E + + + W Sbjct: 214 GTKWTNIIEKDDGDQPASGVLKIMPQLEVESGGITLYRPLLEFPKERLIATCKALGVEWF 273 Query: 190 EDPSNTDDR-FERVRVRRFVRDIDLHALYLKMK------KFQDLRVKVNNAVAMLIPKY- 241 ED +N+D +R +R L + K + + Q+ V LI + Sbjct: 274 EDNTNSDPTLTDRNAIRHLYDHSGLPMVLPKSRVLDFSAQLQNAENIRQQKVDQLIKQCK 333 Query: 242 ----------LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 L + SI +++ + S L LLR I+ S+ +V Sbjct: 334 VLSFDTRRGTLIMEFPSIPSVTPQDITNRSILAAMLLRRVIMT----ITPNSIVSLNQVS 389 Query: 292 LFLKS--------GKRGCVSIGRVVI--------DRRANFLWITRAVR---NLPTLI--- 329 + + ++ ++ D N I R R +L + Sbjct: 390 AAVPEIFPLPDVTTQPKTINTAGIMFQPFNVDRKDAGKNEWHIFRQPRYRSSLDETVVPE 449 Query: 330 LYPEETTVW---DGRYQFQNL---SDSLIQIGPQSYRKADVPSGIPPIIAQRA 376 L P W D RY Q S + + + K D+P + + +R Sbjct: 450 LLPGTQPQWFLFDNRYWLQIHNEMSSKAGNLVVRFFNKEDIPK-LELSLDKRG 501 >gi|237786216|ref|YP_002906921.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385] gi|237759128|gb|ACR18378.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385] Length = 381 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 114/331 (34%), Gaps = 48/331 (14%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 ++ SGG+DS+ L+ + A+ +DH L+ + ++VC L Sbjct: 62 IIGCSGGADSLSLVGCAIK-------QGWRVHAVVIDHGLQAGSAGVATRAANVCQALGA 114 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + VV P+ AARE RY + + A+ ++ AHT DDQ E++ + R Sbjct: 115 SSQVVKV---SPREATETAAREERYRALGQVAQERGGLPVLVAHTGDDQAESLLLGLARG 171 Query: 143 YAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 ++GM + + + RP L RR++ + I+ DP+NT Sbjct: 172 AGLG--SIAGMPPVLFHHPVVDAGATALGRPLLSIRRDNTIGACAELGITPWHDPTNTSG 229 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA------ 251 R RVR + L + + + T ++ Sbjct: 230 DNLRSRVRTQLIPQIRSVLGEGTVDNAIATAAMTRTDDDYLAQRATDALKECECHGSSVD 289 Query: 252 ----------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV----------- 290 L L +++ G ++ +++ + Sbjct: 290 NSGSPESSGLDIATYLRQPQALRGRIIKQWLHHRAGPLTRAHVTAIDALATQWHGQGGVA 349 Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321 + + ++ GR+++ RR + L +T Sbjct: 350 IPWARTPAPP----GRLLVVRRHDELQLTAE 376 >gi|94985096|ref|YP_604460.1| tRNA(Ile)-lysidine synthetase-like protein [Deinococcus geothermalis DSM 11300] gi|94555377|gb|ABF45291.1| tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase [Deinococcus geothermalis DSM 11300] Length = 539 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 87/252 (34%), Gaps = 28/252 (11%) Query: 30 SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89 +DS+ LL AL V + +DH LR + + +V + L + Sbjct: 30 ADSVALLRALVLVGAQP-------VTAHLDHALRPDSAQDAAWVQTLAEELGVPFEAARV 82 Query: 90 KNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 + L AAR RY + A+ A I+TAHT DQ ETV + R A Sbjct: 83 DVAAVAARRGWNLEDAARRVRYEFLGRVARQHRAEAILTAHTRRDQAETVLLGLLRGEAV 142 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 T + + + RP+L R D+ ++L W ED +N D R +R Sbjct: 143 L---------TGIPPIRGRVRRPWLDVSRADVEAWLRSLGQDWREDSTNADPAQTRAWLR 193 Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLL 264 V L L +F ++ + + + + +L Sbjct: 194 TVV-------LPLLATRFPEVEASLVRVARLAQEDDAALRALAARLTPHAPRAAQPPAIL 246 Query: 265 FYLLRVSAAICG 276 + + A G Sbjct: 247 RRHVAQALADAG 258 >gi|227540926|ref|ZP_03970975.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183186|gb|EEI64158.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 270 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 32/298 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 V +SGG DS+ L AL + + +A+ +DH L++ +++ + + Sbjct: 2 AVGLSGGPDSLALTAALVA-------EGVHVTALCIDHGLQDGSREVSEEAARIARSWGA 54 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 V+ P +AAR+ARY +E + AHT DD ET + R Sbjct: 55 EARVIPINVDPPT---ESAARQARYRAFAEW-----GGPVCVAHTMDDLAETFLIAGLRG 106 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GM +T + I RP L RR D + + ++ DP N D F RV Sbjct: 107 MT------CGMRETAEVE-GAHIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADRAFTRV 159 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 RVRR V + + D + A + + + ++ Sbjct: 160 RVRREVLPLLGDIVG------GDAVPALAQAARRTQAEATRMTAT---TVPLATKDLPEA 210 Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 ++ + G ++S P +++++ G+ G +V R ++ + I Sbjct: 211 TRQDIIAGALRAAGAKVSKPHVEGVDKLLTEWH-GQGPRDVGGGLVALRVSDAIKIEE 267 >gi|310287911|ref|YP_003939169.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17] gi|309251847|gb|ADO53595.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17] Length = 372 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 136/342 (39%), Gaps = 39/342 (11%) Query: 5 PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 P + RF PA +LVA SGG DSM L V + I+ A+ VDH Sbjct: 24 PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80 Query: 61 CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 L+E + + + + C L + +VV + S + AAAR+ARY +++ A+ +A Sbjct: 81 RLQEHSDEVAQSAARRCCGLGLDPVTVVPVEVSGDGHSVEAAARDARYRALADTARRESA 140 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AHT DDQ ETV M R L+GM + D + +RPFLR R D Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTG 197 Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225 I+W +DP+N D D F R RVR + ++ A + +F D Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257 Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271 + ++ + +T S ++ D + + ++ + Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDAKALAREPRAIRLRVIAHA 317 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 A G + +++R++ + G R+ Sbjct: 318 LAAVGIEAGFHHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359 >gi|297192940|ref|ZP_06910338.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC 25486] gi|197722655|gb|EDY66563.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC 25486] Length = 370 Score = 150 bits (378), Expect = 6e-34, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 118/305 (38%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL S ++ I+VDH L++ + V + + Sbjct: 71 VLVACSGGADSMALASALAFEARKLS---VRAGGITVDHGLQDGSGMRAAEVVARLTAMH 127 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + + A+ A ++ HT DDQ ETV + R Sbjct: 128 LDPVEAIAVRVGREGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLLGLAR 187 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL R+ R + +++ +DP N D + R Sbjct: 188 GSGIR--SLSGMAAVS--GTAGRYRRPFLHIDRQTARKACMVQSLPVWDDPHNADPAYTR 243 Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R + + + + L +A+ + + L Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDSWAADVESSVRDESGRLECAKL 303 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + + A I G + + + L +G RG +I GRV R+ Sbjct: 304 YVLPPAVRRRVLRRAVIEAGAPAGSLFARHVEEVDRLITGWRGQGAINLPGRVEARRQGG 363 Query: 315 FLWIT 319 L I Sbjct: 364 RLVIR 368 >gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] gi|229323338|gb|EEN89102.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121] Length = 325 Score = 149 bits (377), Expect = 7e-34, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 21/279 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L+ ++VR + + +VA+SGG+DS+ L A + A+ VDH Sbjct: 9 LLALRQAVRAWTVAFEPRRRAVVALSGGADSLALTAAAVAETD-------SVDALIVDHR 61 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L++ + R +D L + V + L AAAREARY+ + + + Sbjct: 62 LQDGSDAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP--- 118 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM + RP L RR R+ Sbjct: 119 VLLGHTLDDQAETVLLGLSRGSG--GRSIQGMAA-----FDAPWGRPLLGIRRSVTRAAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + I+ EDP N + F RVR+R + +I + + + + A+ Sbjct: 172 VDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILGGGVPEALARTATQLREDGEALDEY 231 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 L + + + + LR G Sbjct: 232 AEALLLPVVVDGEVEVDTLAEAPTAIRRRALRAWLLQGG 270 >gi|21221833|ref|NP_627612.1| hypothetical protein SCO3406 [Streptomyces coelicolor A3(2)] gi|256786987|ref|ZP_05525418.1| hypothetical protein SlivT_21069 [Streptomyces lividans TK24] gi|289770880|ref|ZP_06530258.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24] gi|61217439|sp|Q9X8I6|TILS_STRCO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4808345|emb|CAB42759.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] gi|289701079|gb|EFD68508.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24] Length = 352 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 17/307 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ ++VDH L+ + V L Sbjct: 53 VLVACSGGADSMALASALAFEAPRLG---VRAGGVTVDHGLQSGSDLRAEEVVLRLRELG 109 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + A A ++ HT DDQ ETV + R Sbjct: 110 LDPVEATAVTVGRAGGPEAAARDARYAALDAAAARHGAAAVLLGHTRDDQAETVLLGLAR 169 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R + +++ +DP N D + R Sbjct: 170 GSGIR--SLSGMAAVS--GAGGRYRRPFLQVDRQTARKACMVQSLPVWDDPHNADPAYTR 225 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDI 256 R+R AL + + +++ A + + + + Sbjct: 226 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEAGVRDATGGLECAKL 285 Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + +LR +A GG + ++R++ + +G +++ V+ RR Sbjct: 286 YALPPAVRRRILRRAALEAGAPGGALFARHIEEVDRLITGWRG--QGAINLPGKVVARRQ 343 Query: 314 NFLWITR 320 + R Sbjct: 344 GGRLVIR 350 >gi|271970343|ref|YP_003344539.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium roseum DSM 43021] gi|270513518|gb|ACZ91796.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium roseum DSM 43021] Length = 337 Score = 149 bits (376), Expect = 9e-34, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 11/248 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+DS+ L L V + ++VDH L+E + Sbjct: 13 AVRHALDDLEPGDLVLVACSGGADSLALAAGLGFVAPR---AGLSAGLLTVDHGLQEGSP 69 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 D V + + + + G AAAREARYA +SE A + A ++ HT Sbjct: 70 DRAAGVVRLAPAFGLDPAEALSVSVGTSGGPEAAAREARYAALSEAAVRLGAAAVLLGHT 129 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + L+GM RP L R + +S Sbjct: 130 RDDQAETVLLRLARGSGTR--SLAGMPARA-----GLYRRPLLELGRRTTVAACAALGLS 182 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHM 246 +DP N D R+ RVRVR + L + + + A + + V+ Sbjct: 183 PWDDPHNLDPRYTRVRVRERLLPAFEDELGPGVAEALARTADLCRDDADALDGWADAVYA 242 Query: 247 RSIIAISQ 254 R++++ S Sbjct: 243 RAVVSDSA 250 >gi|325187233|emb|CCA21772.1| tRNA(Ile)lysidine synthase putative [Albugo laibachii Nc14] Length = 660 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 13/211 (6%) Query: 7 ESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +S++ F+ ++ + + V++SGG DSM L LH V + I AI +D+ R Sbjct: 207 KSIKRFLVNKNALSDTPVAVSLSGGVDSMVLAYLLHKVRLSSHYYGI--VAIHIDYGNRP 264 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120 + E YV C RL I + + AR+ RY+ + + Sbjct: 265 ESAAECSYVKYWCDRLDIQFYARRIDEVTRGETKRDEYEKIARDIRYSTYRSILEKHSIP 324 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H D E V + + + L+GM +T + I RP L + I F Sbjct: 325 GICFGHHRGDVQENVVSNMMKGLSL--LSLNGMSETST-ANGVVIWRPMLEFDKSTIFDF 381 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + I + +D + R ++R + + Sbjct: 382 AHRYGIPYFKDTTPAWS--TRGKLRNQLMPL 410 >gi|296118975|ref|ZP_06837548.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM 20306] gi|295968073|gb|EFG81325.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM 20306] Length = 340 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 13/211 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ +VR + L +P + V +SGG+DS+ L+ AL ++ A+ +DH Sbjct: 14 FLAVRGAVRESLEQLGWPEQVYVGLSGGADSLALVAAL---CAEVRVATTSVHALCIDHG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINAT 120 +++ + D + + R SV+ + + G+ A AR RY +E A + T Sbjct: 71 VQDGSGDIAKQAAAHAERWGATASVIPVEVVRDSAGGMEAEARRVRYQAFAEVAGEM--T 128 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + AHT +DQ ET+ + S R + + + I RP L RR D Sbjct: 129 PVFVAHTAEDQAETLLLSSLRGHISTMAFATEI-------EGAKIYRPLLGIRRADTLGA 181 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + DP N + F RV +R+ V + Sbjct: 182 CAELGVQAWHDPQNEREDFRRVAIRKTVVPM 212 >gi|297181792|gb|ADI17972.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [uncultured Chloroflexi bacterium HF0200_09I09] Length = 351 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 111/296 (37%), Gaps = 31/296 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVC 77 + ++VA SGG DS LIA+ V G + A + DH LR ++ +V + Sbjct: 28 SPLIVACSGGPDSSAALIAVVRVRERAGGG--EVVAATFDHGLRPQVENDADIEFVQTLA 85 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + V K ++ AAAR+ARY + A ++A ++ HT +DQ ETV + Sbjct: 86 GKMGV--RSVVGKATEGFGTSEAAARKARYIWLGRVALEMSARACVSGHTLNDQAETVLL 143 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNL----------WISRPFLRCRREDIRSF-----LL 182 R R G + L+ + RP L RR++I + L Sbjct: 144 RLARGTGLTGASSMTNDAPWPFTLSGSTAGCDLPSLRLLRPLLNLRRQEIEEYLDALGLD 203 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVA 235 ++ D SN F R RVR V AL ++ + + + Sbjct: 204 AEGLNPRLDLSNETLEFSRNRVRHRVLPELRRLNPRVEEALAGFARRARRDDLALEAWAE 263 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + V ++ + + + +LR + G + +E + Sbjct: 264 AEWERLVYVGRSEVVIDRHSLYELPQAVAMRILRRAGKQLGLAL---DSSQLEALW 316 >gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1] gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1] Length = 644 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 33/242 (13%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIA 83 A+SGG DSM L AL+ K A VDH +R + +E +V+ +L + Sbjct: 14 AISGGVDSMALA-ALYKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVAQELRSKLGME 72 Query: 84 HSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 +++ +W++ AR RY + + + T +M H DDQ ETV MR Sbjct: 73 STILPLTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMRLSN 132 Query: 142 DYAEKGMGLSGMCDTIL---------------------------YDLNLWISRPFLRCRR 174 G+ + I + + RP L + Sbjct: 133 HRLRSGLQAMQRVEWIPECEGIYGVYHSGRVQKPNPDLDMPFPVEQGGIQVLRPLLGFEK 192 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 + + ++ + W ED +N R +R ++ L L + +L V++ Sbjct: 193 ARLIATCEEKKVGWAEDQTNQIQSLTSRNAIRHLYKNYKLPE-ALSVPSLVELSVRMQER 251 Query: 234 VA 235 + Sbjct: 252 IK 253 >gi|323142054|ref|ZP_08076902.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] gi|322413441|gb|EFY04312.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] Length = 328 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 25/326 (7%) Query: 8 SVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ET 65 +R +++L+ P AH L+AVSGG+DS+ H+ + + G +S V+H LR E Sbjct: 10 KLRKTIKNLLQPEAHYLLAVSGGADSL---ALAHACAALAAQGWGSYSVCHVEHGLRGEE 66 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATL 121 A +++ V C + + + + + AAR RYA + A+ A Sbjct: 67 ALRDMQAVQRACKDWGLPCFTEHVQAASYAAQNRLSTEDAARRLRYAALRRIAEQQGAAA 126 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+TAH DQ ET+ +R R +G+ I RP L + + + Sbjct: 127 IVTAHHEGDQAETLLLRLLRGAGLQGLAGM-------RAQQDDIIRPLLTLPKSLLEEYC 179 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNA 233 I+ C D +N D + R RVR + + L + Sbjct: 180 SAEGIAVCYDSTNADTAYTRNRVRLELVPYLERSFNHNVVPTLARTAALLAQDAECLEQM 239 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG-QISLPGYRSMERVML 292 + + ++ + + S + +LR + GG ++S ++++ +++ Sbjct: 240 ADDAYRQLVRRQENAVSLPVTQLTALHSAVRLRVLRRAYFELGGEELSFERSQAIDSLLI 299 Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWI 318 GK + G V+ + +++ Sbjct: 300 RRSGGKFIQLPQGINVVYKNKQLIFV 325 >gi|117927411|ref|YP_871962.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B] gi|117647874|gb|ABK51976.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B] Length = 398 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 5/212 (2%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L A +L A SGG DS+ L A + + R ++ A+++DH L+ + Sbjct: 22 AVRTCLADLPAGALVLAACSGGPDSLA-LAAALAFEAPRRRPALRAGAVTIDHQLQPGSA 80 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + R ++ L + + G AAAR ARYA + E A A ++ AHT Sbjct: 81 ERARQLARFLGELGLDPVEIRAVQVGRDGGPEAAARAARYAALDEVAAQCGAAAVLLAHT 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + ++GM + + RP L R R + Sbjct: 141 LDDQAETVLLGLTRGSGLR--SIAGMPER--FGPADRYRRPLLGIPRSVTRRACRDAGLP 196 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + +DP N D F R R+R V + L + Sbjct: 197 FWDDPQNHDPAFTRSRLRHRVLPVLRAELGPQ 228 >gi|291277350|ref|YP_003517122.1| putative tRNA(Ile)-lysidine synthase TilS [Helicobacter mustelae 12198] gi|290964544|emb|CBG40397.1| putative tRNA(Ile)-lysidine synthase, TilS [Helicobacter mustelae 12198] Length = 331 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 15/204 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F++ L L+ SGG DS L L D G VD+ LRE + EV Sbjct: 3 FLQDL-EGKKNLLGFSGGPDSTALFFCLLEEGIDFDMG-------IVDYGLREQSIKEVA 54 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 Y ++ + + + AR RY K ++ AH +D+ Sbjct: 55 YAKELAACYQKRLFIHQALGIVRD--FEHQARVQRYGFFERIIKEEGYENLLLAHHLNDR 112 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LE M+ + L G + I RP L ++ I + +R + ED Sbjct: 113 LEWFIMQLCKGSGLN--NLLGFRRREERE-GYVIVRPLLEISKDQILEMVRKR--VYFED 167 Query: 192 PSNTDDRFERVRVRRFVRDIDLHA 215 SN + R R ++R+ + + Sbjct: 168 SSNENTRIWRNKIRKNYANSLIQE 191 >gi|224283823|ref|ZP_03647145.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313140977|ref|ZP_07803170.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171] gi|313133487|gb|EFR51104.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171] Length = 372 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 39/342 (11%) Query: 5 PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 P + RF PA +LVA SGG DSM L V + I+ A+ VDH Sbjct: 24 PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80 Query: 61 CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 L+E + + + + C L + +VV + S G+ AAAR+ARY +++ A+ +A Sbjct: 81 RLQEHSDEVAQSAARRCCGLGLDPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESA 140 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AHT DDQ ETV M R L+GM + D + +RPFLR R D Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTG 197 Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225 I+W +DP+N D D F R RVR + ++ A + +F D Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257 Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271 + ++ + +T S ++ D + + ++ + Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDAKALAREPRAIRLRVIAHA 317 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 A G + +++R++ + G R+ Sbjct: 318 LAAVGIEAGFRHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359 >gi|226294081|gb|EEH49501.1| PP-loop family protein [Paracoccidioides brasiliensis Pb18] Length = 690 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 103/299 (34%), Gaps = 76/299 (25%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+ I +AVSGG DSM L ++S+R + VDH RE + +E V+ Sbjct: 38 KPSRIALAVSGGPDSMALAFLCKQLISERLIPDLNVKPFIVDHKAREGSTEEAHNVASWL 97 Query: 78 SRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L S+++ + + + +AR+ RY ++ K N + H DD + Sbjct: 98 KDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTV 157 Query: 133 ETVYMRSQR--------------DYAEKGMGLSGMCDTILY------------------- 159 ETV R R + + G+ G+ ++ + Sbjct: 158 ETVLSRLVRGQRQASGFTGVASVGHIPECHGIYGLAESGSFIKLKNVKSRIDPAGRHPVH 217 Query: 160 -------------------------------DLNLWISRPFLRCRREDIRSFLLQRNISW 188 D +++ RPF + + S LQ NI + Sbjct: 218 DRERPDESQLKQAWGINSNTPHSNDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIKF 277 Query: 189 CEDPSNTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 D +N D R +R + R + ++ ++ + + ++N + + K Sbjct: 278 AIDKTNFDPTVTSRNTLRYLLSNDMLPRALRAPSILQLIENSKQVSEELNRQSNIFLRK 336 >gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818] Length = 666 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 9/205 (4%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L+ + L G + A+ VDH LR + +E V+ +A V Sbjct: 1 MALVSLVKHAL-----GADRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAWR 55 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 AR RY + A T IMT H DD ET+ +R R + G+ Sbjct: 56 VNDKHTQEMARHKRYHALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMR 115 Query: 153 MCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFV 208 + Y L ++RP L + ++ + I W EDP+N D ++ R +R + Sbjct: 116 EVQPLYYAHAFEPLLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRDATKYTRNSIRHAL 175 Query: 209 RDIDLHALYLKMKKFQDLRVKVNNA 233 + + + R V A Sbjct: 176 AALQEDEQQEHGDRQEGNRECVGEA 200 >gi|294790630|ref|ZP_06755788.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304] gi|294458527|gb|EFG26880.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304] Length = 474 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 8/178 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG DS+ L V + ++ A+ VDH L+ + + ++ C+ Sbjct: 45 VLVACSGGRDSLALAYTAKIVCASLG---VRCGAVIVDHHLQTGSGLVAQKAAEQCTAYG 101 Query: 82 IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 +A + + + + GL + AR+AR+ + A A++ + AHT DQ ET+ R Sbjct: 102 LAPVLIRRAQVHRTRAGLESDARDARFLQLISAAHDEAASVTLLAHTMSDQAETILFRFL 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ + L+GM T + + +RPFL R++ LQ I W +DP+N D+ Sbjct: 162 RNPSI--TALAGM-QTFIRREGVLFARPFLQGLTRQETTDLCLQAGIQWWDDPTNADN 216 >gi|86742988|ref|YP_483388.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3] gi|86569850|gb|ABD13659.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3] Length = 595 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 66/272 (24%), Positives = 105/272 (38%), Gaps = 13/272 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR V L +LVA SGG DS+ L AL V R+ ++ ++VDH + Sbjct: 43 AVRRAVTDLPPGGLVLVACSGGPDSLALAAALAFVAPRRA---LRAGMVTVDHGWDTGST 99 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + V+ L + V +++ G+ AR A I+ A + A ++ HT Sbjct: 100 ERAERVARQGRALGLDPVEVLTEHTARSEGIARQARRA---AIAAAADRLGARAVLLGHT 156 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + +G + +SRP L RR D R+ L + Sbjct: 157 LDDQAETVLLRLARGAGARSLGGMS-------ADDGLLSRPLLGIRRADTRAACLAEGLE 209 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 +DP+N D F R RVR V + L + + + A A + Sbjct: 210 VWDDPTNRDPAFTRSRVRHTVLPVMETELGPGIAESLARSADLLRADADALDAMAAEVYG 269 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 ++ + L A G++ Sbjct: 270 KVVRARGRPCTGEVAFDVAALAGLTAAVRGRL 301 >gi|311064792|ref|YP_003971517.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum PRL2010] gi|310867111|gb|ADP36480.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum PRL2010] Length = 372 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 39/342 (11%) Query: 5 PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 P + RF PA +LVA SGG DSM L V + I+ A+ VDH Sbjct: 24 PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80 Query: 61 CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 L+E + + + + C L + +VV + S G+ AAAR+ARY +++ A+ +A Sbjct: 81 RLQEHSAEVAQSAARRCCGLGLAPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESA 140 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AHT DDQ ETV M R L+GM + D + +RPFLR R D Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--ALAGMPRIVERD-GVRFARPFLRLTRADTTG 197 Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225 I+W +DP+N D D F R RVR + ++ A + +F D Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257 Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271 + ++ + +T S ++ D + + ++ + Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDTKALAREPRAIRLRVIAHA 317 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 A G + +++R++ + G R+ Sbjct: 318 LAAVGIEAGFRHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359 >gi|304437099|ref|ZP_07397062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370050|gb|EFM23712.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 474 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 111/321 (34%), Gaps = 30/321 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +L A SGG+DS+ LL L + + G + +H +R A Sbjct: 26 FAPDRRVLAACSGGTDSLVLLDILRDL---HAAGGPQIICAHYEHGIRGAASRADADAVA 82 Query: 76 VCSR-LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I + V + L AAR RY + + + +I AH DD Sbjct: 83 AYCAARDIPCIIEAGDVPRYARTHKLSLETAARVCRYDFLHRLQEQEHCDVIALAHHADD 142 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV MR R G+ D + RP L R +I ++ + C Sbjct: 143 LAETVLMRILRGTGPAGLAAMREWDGVH-------LRPLLHTARTEIERYIRTHELHPCH 195 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D +N +R R+R + L L + + + +A +LT + + + Sbjct: 196 DLTNDQQDAQRNRIRHTL----LPTLCTYGNRNIRDALVRLSVLAGEEDDFLTQYAAAEL 251 Query: 251 A-------ISQDILN-IDSTLLFYLLRV-SAAICGGQISLPGYRSMERVMLFLK-SGKRG 300 +S +LN + + ++ +LR+ + GQ L Y ER+ L G Sbjct: 252 ERASSGGGLSVGVLNTLHTAMVRRVLRLFWERVTAGQQDL-SYEHEERMRRLLMLVGTAQ 310 Query: 301 CVSIGRVVIDRRANFLWITRA 321 C R L + R Sbjct: 311 CELPHGWRARLRYGVLRLQRE 331 >gi|148652148|ref|YP_001279241.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1] gi|172048461|sp|A5WCA0|TILS_PSYWF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|148571232|gb|ABQ93291.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1] Length = 525 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 114/339 (33%), Gaps = 41/339 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + + +A SGG DS+GL + ++ + I V+H ++ + + V Sbjct: 19 HAQLLGKRVWLACSGGRDSLGLALLCRTLFDQGRLPFLP-QLIHVNHGMQAANDEWAQQV 77 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +A ++ + AAR+ RY + + +++ H DDQ+E Sbjct: 78 AQWAQQHDMACQIIGLNLTHKS---EQAARDGRYQAMMQLMNQ--DDVLILGHHQDDQVE 132 Query: 134 TVYMRSQRDYAEKGMGLSGM------------CDTILYDLNLWISRPFLRCRREDIRSFL 181 T+ MR G+G D +++ RP+L R+ I + Sbjct: 133 TLLMRLFNGAGVTGLGAMREWTSKQAHTAQSPPDVNKPRQRIFLWRPWLEISRDQITEYA 192 Query: 182 LQRNISWCEDPSN---------TDDRFERVRVRRFVR-------DIDLHALYLKMKKFQD 225 + N+ + +DP+N +R +R + A+ + Q Sbjct: 193 QRHNLKYIDDPTNVAQSPSKLALQTLNDRAWLRSVLLPHITERYPQASEAMARTAQLMQQ 252 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY 284 ++ V + + I+ D L + + L+ A Q+ Sbjct: 253 ASDSIDEQVTQDLAQVALAATEQQSVIALDKLAGLSAPRQAALIHHWLAPYPNQLPPSKR 312 Query: 285 RSMERVMLFLKSGKRGCVSIG------RVVIDRRANFLW 317 E + L + + + + R N L+ Sbjct: 313 LVDEVLALSFRQDSNHQTCLYFDAGSEQYQVRRYQNKLY 351 >gi|242310195|ref|ZP_04809350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523492|gb|EEQ63358.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 327 Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 15/198 (7%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 F+ L A L+A S G+DS L L +I F VD+ R+ +K EV Sbjct: 5 FLDEL-KNAKNLLAFSSGTDSTALYFLLKEY-------EISFDIAIVDYGTRKQSKLEVS 56 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +C ++ K A AR+ RY + ++ AH +D Sbjct: 57 RAKSLCFWDNKKCYTLTTKPITK--NFEAEARKIRYDFFYTLTLQESYQNLILAHQLNDN 114 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISW 188 E M+ + + + M + ++ ++ I RP + + I+S+L +RNI + Sbjct: 115 FEWFLMQFCKGSSVENMQIP--KKSLFWEESQRKCHILRPMISISKNQIKSYLQKRNIFY 172 Query: 189 CEDPSNTDDRFERVRVRR 206 ED SN D F R R+ Sbjct: 173 FEDSSNLDIVFTRNYFRK 190 >gi|308175886|ref|YP_003915292.1| tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117] gi|307743349|emb|CBT74321.1| putative tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117] Length = 308 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 17/258 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P L+ +SGG ++ + +F A+ VDH L+ + + C Sbjct: 18 PGLNLIGISGG-------ADSLALAIAAATLPGRFGAVIVDHSLQAGSAQAAQRAGQQCR 70 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 L + ++S + P A+AR+ARY + +A +M AHT DDQ E V + Sbjct: 71 ELGLNPVLISEVETSPD---EASARDARYQAFDQALAQFDADTLMLAHTRDDQAEQVLLG 127 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+GM RP L R I + +DPSN D Sbjct: 128 LVRGSGTR--SLAGMPAQR-----GAYRRPLLELSRAQTEEICRHAGIEYWDDPSNADTG 180 Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 ++R +R + L +++ + A A + + ++ Sbjct: 181 YKRNLIRHRILPFLEQELGTHLRQALARTANLAAADAQALDHWAQKAKDEHGLQLPELRK 240 Query: 259 IDSTLLFYLLRVSAAICG 276 + + +LR+ A G Sbjct: 241 LPVAVSSRVLRLGAMEAG 258 >gi|300934617|ref|ZP_07149873.1| cell cycle protein MesJ [Corynebacterium resistens DSM 45100] Length = 344 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 57/262 (21%), Positives = 97/262 (37%), Gaps = 16/262 (6%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V +SGG+DS+ LLI ++ A+ VDH L++ ++ L Sbjct: 2 VVGLSGGADSLALLIVAIRF-------GMEVHAVIVDHGLQDGSEQVAETARQQAEDLGA 54 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 A + + + A AR ARY + + AK ++ AHT D E V + R Sbjct: 55 ASA--RVIAVQCRADDEAQARAARYEALGQIAK---GKPVLVAHTASDDAEGVLLSLARG 109 Query: 143 YAEKGMGLSGMC---DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + +++ W+ RP L C R + N+SW EDP N R+ Sbjct: 110 SGLDALAGMRAATRDHPVVHAGAGWLGRPLLMCDRAATELVCREANVSWWEDPHNRSSRY 169 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-ISQDILN 258 R VR + L + A + + ++++ + S++ + Sbjct: 170 LRSCVRHKLMPQVTDVLGEHAPDALARSARQFRADSDALWAIAKKELQAVASGASKNRNS 229 Query: 259 IDSTLLFYLLRVSAAICGGQIS 280 S L L A G+I Sbjct: 230 KKSNLNCAKLAELPAAVRGRIY 251 >gi|56750421|ref|YP_171122.1| hypothetical protein syc0412_c [Synechococcus elongatus PCC 6301] gi|56685380|dbj|BAD78602.1| hypothetical protein YCF62 [Synechococcus elongatus PCC 6301] Length = 283 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 93/272 (34%), Gaps = 18/272 (6%) Query: 39 LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98 + + + + DH R + ++ + + ++ Sbjct: 1 MQLLRGLQPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQLPFYCQRSPEPPRS--- 57 Query: 99 MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 AAAR RY ++ A I+A L++T HT D+ ET+ R +G L+ + Sbjct: 58 EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTRGSHLQG--LASLRWQRS 115 Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDI 211 L + RPFL R + + Q + ED +N D RF R R+R R + Sbjct: 116 LSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFARNRLRLEVLPQLRQINPQ 175 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 L + D + + + L+ ++Q + + +L L+ Sbjct: 176 CDRHLANTAELLADEADWLAELTEQVYQQSLSERGLCRSQLAQQPIALQRRVLHAFLQDQ 235 Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303 P +E + + + + C S Sbjct: 236 LQRS------PSTVQVEELRQLITAPQGSCSS 261 >gi|328883305|emb|CCA56544.1| tRNA(Ile)-lysidine synthetase [Streptomyces venezuelae ATCC 10712] Length = 335 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 77/305 (25%), Positives = 123/305 (40%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ I+VDH L++ + V + L Sbjct: 36 VLVACSGGADSMALASALAFEARKL---PVRAGGITVDHGLQDGSDTRAGEVVGRMTALG 92 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + S + G AAAR+ARYA + A+ A I+ HT DDQ ETV + R Sbjct: 93 LTPSEAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAILLGHTRDDQAETVLLGLAR 152 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM + + RPFL+ R+ +R + + ++ +DP N+D + R Sbjct: 153 GSGIR--SLSGMAA--ISGASGRYRRPFLQLDRQTVRKACVAQELAVWDDPHNSDPAYTR 208 Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R + + + + L +A+ T A+ L Sbjct: 209 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAADAETSVRDEAGALECAKL 268 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + + A I G + + + L +G RG +I GRV R+ Sbjct: 269 HGLPPAVRRRVLRRAVIAEGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEARRQGG 328 Query: 315 FLWIT 319 L I Sbjct: 329 RLVIR 333 >gi|283797945|ref|ZP_06347098.1| PP-loop family protein [Clostridium sp. M62/1] gi|291074411|gb|EFE11775.1| PP-loop family protein [Clostridium sp. M62/1] gi|295091863|emb|CBK77970.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Clostridium cf. saccharolyticum K10] Length = 241 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 14/215 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V +SGG DS+ LL AL + AI+VD E + C Sbjct: 22 SGDKIAVGLSGGKDSLALLYALKHIQKFYP-KSFDLCAITVDLGF-GNFNLEAA--QEFC 77 Query: 78 SRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 S L + +++V + S + ++ A + R +++ AK + I AH DD Sbjct: 78 SSLCVPYTIVPTEISQVVFETRKESNPCALCAKMRKGALNQAAKNLGCNKIAYAHHRDDL 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T+ + +G S T L ++L++ RPFL DI F + ++ C++ Sbjct: 138 IDTMLLSLI----YEGRFHSFSPKTYLDRMDLFVIRPFLYIPEADIIGFKNRYSLPVCKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 P D + +R V++ ++ I++ A +K + F + Sbjct: 194 PCPVDGKTKREYVKQLIKTINMEASGVKDRLFHAI 228 >gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] gi|118171008|gb|ABK71904.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2 155] Length = 322 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 26/269 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 V VA+SGG DS+ L + +A+ VDH L+ ++ Sbjct: 21 VDGERWCVALSGGPDSLALTAVAAAERPT--------TALIVDHGLQTGSRAVAETARAQ 72 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + + + G AAAR+ARY + + ++ HT DDQ ETV Sbjct: 73 ALSVGCVGAEIIPVVVGRSGGPEAAARKARYTALQAAR---DGAPVLLGHTLDDQAETVL 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + + D + RP L RR + + + DP N + Sbjct: 130 LGLARGSGPRSIAGMRPHDPPWH-------RPLLGIRRTVTHAACEELGLKPWHDPHNFE 182 Query: 197 DRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 RF R R+R V + AL ++ ++ + T Sbjct: 183 PRFTRTRLRLDVMPLLEEVLGGGVAEALARTATALREDTETLDEIARQALETSQTSARTP 242 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGG 277 ++ + + + ++R GG Sbjct: 243 PGLDTEVLAGLPGAVRRRVIRAWLLTNGG 271 >gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|291006247|ref|ZP_06564220.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] gi|133909630|emb|CAL99742.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338] Length = 330 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 108/309 (34%), Gaps = 16/309 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG+DS+ L A V R I + VDH L+E + D ++ L Sbjct: 32 VAVACSGGADSLALAAATTHVARRR---DIAVHGLVVDHGLQEGSADVASRAAEQLEELG 88 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + G AAAR A + A ++ HT DDQ ETV + R Sbjct: 89 CDVVRVLPVEIGREGGPEAAARRA--RYAALDAARPAGAPVLLGHTRDDQAETVLLGLGR 146 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + ++L RPFL R+ + + +DP N+D +F R Sbjct: 147 GSGARSIAGM-------RPVDLPWLRPFLDVTRDTTLAACEALGLRPWQDPHNSDAKFTR 199 Query: 202 VRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDIL 257 VR+R V + L + V++ L V R + + Sbjct: 200 VRLRAEVLPLLEEVLQGGVASALARTAVQLREDADALDEVAADVRKRVEDGDALDAAALS 259 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317 + +LR G + + ++ G+ G V+ R L Sbjct: 260 AGPPAVRRRVLRGWLLDQGVREVSDAHLRAADALVGHWKGQGPHALPGGFVLRRTHGTLR 319 Query: 318 ITRAVRNLP 326 + AV+ P Sbjct: 320 VEVAVKQPP 328 >gi|256826669|ref|YP_003150628.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641] gi|256582812|gb|ACU93946.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641] Length = 378 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 102/301 (33%), Gaps = 51/301 (16%) Query: 14 RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71 R+LV P +L+ VSGGSDS L + + G + + V+HCLR A D + Sbjct: 18 RALVLPDQPVLLMVSGGSDSTALAYLTSDLSAAGRVGPLAL--VHVNHCLRGDASDGDAA 75 Query: 72 YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL------ 121 +V + L + + + L A AR RYA E A L Sbjct: 76 FVRHLAEALELPYFQYDIDIAALVEQTGENLEAVARSERYAAAQEALSNFCAQLNFPTSS 135 Query: 122 --IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I AHT +D++E YMRS G + +N I RP L R+D+R Sbjct: 136 GRIFVAHTRNDRVENFYMRSIVGCGPGGF-------RSMRYINGCIVRPLLDVSRDDLRD 188 Query: 180 FLLQRNIS-----------------WCEDPSNTDDRFERVRVRRFV-------RDIDLHA 215 +L +R + W ED +N R VR + L Sbjct: 189 YLRRRALDAQNDASVVLVRDKDGSLWREDATNAHTDRFRAYVRTTMVPAALERNPRVLEV 248 Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYLLRVS 271 L M D + ++ + I I + F +L+ Sbjct: 249 LCRTMNLIADEDDMLAEMAEHIMTSDVQWRDDETCLIKPSFAQHQQPIQRRVAFQILQRL 308 Query: 272 A 272 Sbjct: 309 L 309 >gi|270289038|ref|ZP_06195340.1| MesJ/Ycf62 family protein [Chlamydia muridarum Weiss] Length = 283 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 13/219 (5%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARY 107 I F+A+ VD+ RET+ E ++ +C R +I + + + P + + AR+ RY Sbjct: 8 GISFTAVHVDYGWRETSYQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRY 67 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 L K + H DDQ ET+ R L GM Y + + R Sbjct: 68 ELFYRLCKERLFAGVFLGHHADDQAETILKRVFEGAHLG--NLKGMARYGTY-KGITLLR 124 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLK 219 P L + I L I + +D +N D+RF R R+R + L Sbjct: 125 PLLHITKRQIVEALDNYRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFL 184 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258 + +LR ++ A + + + + + + Q++L Sbjct: 185 AEDSAELREYLDQQAAPFLSQVIDNEIGQFLPVGQELLQ 223 >gi|226226797|ref|YP_002760903.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27] gi|259533720|sp|C1A873|TILS_GEMAT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226089988|dbj|BAH38433.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27] Length = 468 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 27/301 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +++AVSGGSDSM LL A+ DR + DH A D V+ RL Sbjct: 30 PLVLAVSGGSDSMALLFAMERWAPDRIAA-----VATFDHGTGSYATDAASLVAAHGRRL 84 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V+ + +P AA R+AR++ + A+ +A + TAHT DDQ ETV MR Sbjct: 85 GL--TVIRERARRPGVN-EAAWRDARWSFLQRVARGFHAR-VATAHTRDDQAETVVMRLL 140 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R +G+ + RP+L RE++ +L + + EDP N F Sbjct: 141 RGSGARGLAALAAPSP--------VVRPWLGVSREELTRWLASEGLPFLEDPMNASRYFL 192 Query: 201 RVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R RVR + A+ L ++ R +V + + H ++ Sbjct: 193 RARVRHELLPACEAASPGFRDAMLLIGERAARWRREVEQYLDQA--GLVVEHAGRSASLP 250 Query: 254 QDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 ++L + +L +A G + G R+ R + G V+ G ++ R Sbjct: 251 VEVLEQTTPEGQAVLWAALSARAGVTLDAHGTRAAVRFTSSRRRGAYITVAGGAAIMRTR 310 Query: 313 A 313 Sbjct: 311 R 311 >gi|34558077|ref|NP_907892.1| hypothetical protein WS1770 [Wolinella succinogenes DSM 1740] gi|61217316|sp|Q7MR31|TILS_WOLSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|34483795|emb|CAE10792.1| conserved hypothetical protein-Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Wolinella succinogenes] Length = 326 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 15/214 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DS L L +I F V++ R AK+E Y ++ R Sbjct: 16 GKNLLGFSGGVDSTALFFLLLE-------REIPFDIALVNYHQRAQAKEEESYAKELAHR 68 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +S + AR RY ++ AH D+LE + MR Sbjct: 69 HQKRCFTLSCPLGP--SNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRL 126 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + + L G + L + RP +E + +L Q I + ED SN D + Sbjct: 127 AQGSSL--STLLGFSSREIR-LGYELIRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183 Query: 200 ERVRVR---RFVRDIDLHALYLKMKKFQDLRVKV 230 R R R + L + Q+ R + Sbjct: 184 LRNRFRPLSETLLKEHAQGLLQSFRFLQEEREIL 217 >gi|254388634|ref|ZP_05003867.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294813246|ref|ZP_06771889.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC 27064] gi|326441644|ref|ZP_08216378.1| tRNA(Ile)-lysidine synthase [Streptomyces clavuligerus ATCC 27064] gi|197702354|gb|EDY48166.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus ATCC 27064] gi|294325845|gb|EFG07488.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC 27064] Length = 371 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 120/305 (39%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL S ++ I+VDH L++ + V+ + + Sbjct: 72 VLVACSGGADSMALASALAFEARKLS---VRAGGITVDHGLQDGSALRAAEVAARLTAMG 128 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + E A + A ++ HT DDQ ETV + R Sbjct: 129 LDPVEATAVCVGRDGGPEAAARDARYAALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 188 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R + +++ +DP NTD + R Sbjct: 189 GSGIR--SLSGMAAVS--GTRGRYRRPFLQIDRQTARKACMVQSLPVWDDPHNTDPAYTR 244 Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R + + + + L +A+ + L Sbjct: 245 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAADAADAVRDETGQLECAKL 304 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + A I G + + + L +G RG +I GRV R++ Sbjct: 305 YALPPAVRRRVLRRAVIEAGAPAGSLFARHVEEVDRLITGWRGQGAINLPGRVEALRQSG 364 Query: 315 FLWIT 319 L I Sbjct: 365 RLVIR 369 >gi|302381981|ref|YP_003817804.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302192609|gb|ADL00181.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 409 Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 144/375 (38%), Gaps = 23/375 (6%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL + AI+VDH L A R ++ + W+ Sbjct: 1 MALLHI---AAGWARAAGRRLLAITVDHGLNPDAAAWSRRCAEAARAVGADWVERRWEGD 57 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 KP TGL AAAR AR+ALI+E A+ A +++ AHT +D E+ +MR R G+ Sbjct: 58 KPATGLPAAARHARHALIAEAARDAGAKVVLIAHTANDIAESDWMR-ARGTMLGGLREWS 116 Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 L + RP + RRED+R +L W EDP N F R + RR + + Sbjct: 117 PSPAWPEGRGLMLLRPMVNERREDLRGWLRSAGEGWIEDPGNE--GFGRGKARRALLPLP 174 Query: 213 LHALYLKMKK--FQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 +++ ++ RV+ + + P L H ++ A S L Sbjct: 175 EGEGLSVLERSDWERERVRGLALAGSHRNPSPFRLKAHRSALRASSALPLGEGFIWAGEA 234 Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP- 326 L ++ G LP + + L G ++ I+ + + I R L Sbjct: 235 LAMNLLCAAGHDRLPRSERLAALADRLAGGDPFTATLAGARIEASPDRMIIGREAGELKR 294 Query: 327 ----TLILYPEETTVWDGRYQFQNLS------DSLIQIGPQSYRKADVPSGIPPIIAQRA 376 L L + VWDGRY+ + +L ++ S + +PP + A Sbjct: 295 RPPGPLALDTDTPAVWDGRYEITACAAGWSVVPALGRLNRLSKADRALADTVPP-WGRGA 353 Query: 377 LSSMPSKEGGKPLLA 391 L + P+LA Sbjct: 354 LPVLIRDGSDAPVLA 368 >gi|325961732|ref|YP_004239638.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323467819|gb|ADX71504.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 402 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 68/299 (22%), Positives = 115/299 (38%), Gaps = 22/299 (7%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRET 65 +R + YP ++VA SGG DS+ L A+ + + R ++ A+ VDH L+E Sbjct: 52 LRDALAQAGYPGRLIVACSGGPDSLA-LAAVAAYFARRGHVDGHPVRVGAVVVDHQLQEG 110 Query: 66 AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + V L + + + + G AAAREAR+ + A A ++ Sbjct: 111 SAEVAAETARVLQELGLAPVEIRTVTVAGEGMGPEAAAREARHEALEAAAAGQGADAVLL 170 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DDQ E V + R + + + RPFL RR D Sbjct: 171 GHTLDDQAEQVLLGLARGSGTRSLAGM-------RPARGKLLRPFLELRRADTEEICAVE 223 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY--- 241 + DP+N D F R R R V L + + + A + + Sbjct: 224 ELDPWHDPTNADPAFARSRTRMEVLPHLEEKLGPGVAESLARTAAILQLDADYLEEVAET 283 Query: 242 ----LTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L +++ ++ L + + F ++ +AA GGQ P Y+ + L+ Sbjct: 284 TFLSLAQRNGPEVSLPEEALRALAPAIRFRVIAKAAADVGGQQ--PSYQRLLAAEALLR 340 >gi|124514863|gb|EAY56374.1| TRNA(Ile)-lysidine synthetase [Leptospirillum rubarum] Length = 504 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 21/219 (9%) Query: 2 FLSP-IESVRFFVR-------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53 FLSP + + F+R + P H VA+SGG+DS+ L +L + Sbjct: 14 FLSPYLSRLESFLRDNGIHPDNHPSPPHFHVAISGGADSV----FLAFLLHLFLEDRHSL 69 Query: 54 SAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112 + + +H R +++ ++ + + + P R+ RYA Sbjct: 70 TLVHFNHRTRGKENEEDEIFLRNFARHIGRPLRIGILSEPLPDNVPEDFLRKKRYAFFDT 129 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLR 171 ++ AH DDQ+ET+ M R KG +G+ D ++ RP L Sbjct: 130 LLTENRKNILFLAHHQDDQVETILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLE 182 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 ++IR+ L I + D SN + R RVR + Sbjct: 183 TGADEIRNVLSDHRIPYRIDSSNLQHDYLRNRVRMELVP 221 >gi|227494492|ref|ZP_03924808.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436] gi|226832226|gb|EEH64609.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436] Length = 366 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 24/298 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 H +VA SGG+DS+ L +A + F+A+ VDH LR + E V+ Sbjct: 37 DHWVVACSGGADSLALTVATADWCHRLNK---DFTAVIVDHQLRSESAAEAASVAADLIA 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMR 138 +I VV + Q G+ A AREARY + + T+N T ++ HT DDQ ETV ++ Sbjct: 94 NKIPAVVVKAQVRAGQ-GIEAQAREARYQALVDFCNTLNQPTAVLVGHTQDDQAETVLLK 152 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197 R K L+GM + RPFL RR F + + +DP+N D Sbjct: 153 LARGAGMK--ALAGMPQQWRNPQGIKFHRPFLAEIRRRQTEEFCNCLGLEYVQDPTNFLD 210 Query: 198 ---------RFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 RV +R V + + + R + + ++ + Sbjct: 211 GPWKTQAGQALPRVALRHQVLPQLKTALGQDPIPALNRVASQAREDEDFIFNFALKRWES 270 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 ++ + D L ++ + +R+ I + + + L + +G Sbjct: 271 GELQDQWGVRVDALEKEAKAVR--MRIWKLIFAQHSHIQLTSRQLQELDRLITDWQGQ 326 >gi|302535220|ref|ZP_07287562.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C] gi|302444115|gb|EFL15931.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C] Length = 342 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 4/211 (1%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ I+VDH L+ + V + LR Sbjct: 40 VLVACSGGADSMALASALAFEAPKLG---IRAGGITVDHGLQVGSDLRAAEVVTRMTALR 96 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + E A + A ++ HT DDQ ETV + R Sbjct: 97 LDPVESVAVRVGREGGPEAAARDARYAALDEAADRLGACAVLLGHTRDDQAETVLLGLAR 156 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + N RPFL+ R+ R + +++ +DP N D + R Sbjct: 157 GSGIRSLSGMAEVSGGPGRTN-RYRRPFLQVDRQTARKACMVQSLPVWDDPHNIDPAYTR 215 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R+R AL + + +++ Sbjct: 216 SRLRHEGLPALEKALGKGVVEALARTAQLSR 246 >gi|182414547|ref|YP_001819613.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1] gi|177841761|gb|ACB76013.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1] Length = 353 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 10/233 (4%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCSRLRI 82 VA SGG+DS+ L + + + + SA +H LR A + R+ + VC+ L + Sbjct: 44 VAFSGGADSL---ALLLLLWAHWPEHRRRLSAAHFNHRLRGRAALQDERFCARVCAALHV 100 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 +V W++ +P A AR AR+A + A ++ H DD ET+ MR R Sbjct: 101 PLAVDHWED-RPAKPSEAEARTARHAFFDRQLRKRRARVLWFGHQQDDIAETLLMRLARG 159 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GL+ RP L ++ ++ + L + SWCED +N + + R Sbjct: 160 SGL--AGLAAPRPVQAMPAGKVHLRPLLGLKKAELAAALRRCGASWCEDQTNAGEHYLRS 217 Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 R+R+ V A+ + ++ + L + + + +D Sbjct: 218 RIRQRVLPAWRAAVGERDALAG---AALSRELMEEDDTALQAWLARLAPLRED 267 >gi|317488918|ref|ZP_07947448.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA] gi|316911992|gb|EFV33571.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA] Length = 371 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 112/318 (35%), Gaps = 44/318 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 L+ VSGGSDS L + + G++ + V+H LR E A ++ R+V+ + L Sbjct: 30 LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 87 Query: 82 IAHS----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFD 129 + ++ + + + A AR RY + A + I+TAHT D Sbjct: 88 VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 147 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF--------- 180 D++E+ YMRS G + N + RP L RE++R++ Sbjct: 148 DRVESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 200 Query: 181 ---LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230 W ED +N R VR + L L M D + Sbjct: 201 PVACDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDML 260 Query: 231 NNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 + V L+ ++ A ++ L + + + G+ + S+ Sbjct: 261 EDMVDGLMAGHVEALGDEYDAGCVLAPAFGAEPLPLRRRAVMRALQLMLGRDARVETASV 320 Query: 288 ERVMLFLKSGKRGCVSIG 305 E V+ G G Sbjct: 321 EAVLAAFDDEAGGKPRSG 338 >gi|291563476|emb|CBL42292.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SS3/4] Length = 261 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 18/215 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVC 77 HI V VSGG DS+ LL ALH + A +VD +++ + + C Sbjct: 24 DHIAVGVSGGKDSLALLYALHELQRFYP-KHFTLHAFTVDLGFGIQDFSG-----IKAFC 77 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ +++ + K ++ A + R ++ AK I AH DD Sbjct: 78 DGFQVPLTIIPTEIGKIVFETRKESNPCALCAKMRKGALNLEAKAAGCNKIAYAHHKDDI 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ + +G + T L L + RP + D+ F + N+ C++ Sbjct: 138 IETMLLSLM----FEGRFYTFPPKTFLDRTELTVIRPLMYVSEADVIGFKNKYNLPVCKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 P D +R V+ ++ +K + F + Sbjct: 194 PCPADGHTKREYVKNLTSQLNKENPGIKERLFHAV 228 >gi|320010033|gb|ADW04883.1| tRNA(Ile)-lysidine synthetase [Streptomyces flavogriseus ATCC 33331] Length = 357 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 124/305 (40%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL + ++ I+VDH L+ + V + +R Sbjct: 58 VLVACSGGADSMALASALAF---ESRKLPVRAGGITVDHNLQPGSGLRAGEVVARLAEMR 114 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 115 LDPVEAVAVRVGRDGGPEAAARDARYAALDAAAERHGAFAVLLGHTRDDQAETVLLGLAR 174 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R L ++I +DP N D + R Sbjct: 175 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 230 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII----AISQDIL 257 R+R AL + + +++ A + + RS++ + L Sbjct: 231 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAARSVLDDAGRLECVKL 290 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 ++ + + A I G + + + L +G RG +I GRV + R+ Sbjct: 291 SVLPPAVRRRVLRRAVIDAGSPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEVRRQGG 350 Query: 315 FLWIT 319 L I Sbjct: 351 RLVIR 355 >gi|167586804|ref|ZP_02379192.1| tRNA(Ile)-lysidine synthetase [Burkholderia ubonensis Bu] Length = 370 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 118/325 (36%), Gaps = 26/325 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + A I +A SGG DS LL A V G + A+ V H L Sbjct: 14 LDAVGVALADAPSGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCIALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 A + + ++L +A + + G+ A+ARE+RYA + + A ++ Sbjct: 69 ADAWAAHAAASAAKLGVAFDSMRVDVPRNSGAGIEASARESRYAALDAMCERHGAAVLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R + + RP LR R + + QR Sbjct: 129 AQHADDQAETVLLQLLRGAGIA-GIAAMAPRYRPAAARVERVRPLLRLLRAQLERYAAQR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKY 241 ++W +D SN D RF R +R V L AL + F+D + A L+ Sbjct: 188 ELAWIDDESNQDTRFARNALRVDV----LPALAVHFPGFRDALGRAAQHAASAQRLLDDL 243 Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + L+ +D LLR G + + +M L+ Sbjct: 244 AELDFAGAARDDGRALSRSALVALDDARGANLLRFWMRRLG--LPGASAARLADMMRQLR 301 Query: 296 SGKRGCVSIGRVVIDRRANFLWITR 320 + +D L + R Sbjct: 302 DAHDA----HALRVDHAGQCLRLYR 322 >gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] gi|284062456|gb|ADB73394.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160] Length = 341 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 13/273 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR +R+ P +L A SGG+DS+ ++ + ++ I+VDH L+ + Sbjct: 14 AVRPGLRASDRP--VLAACSGGADSV---ALAAALAFEARHAGVRAGGITVDHGLQPGSA 68 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + L + +V G AAR ARY A + HT Sbjct: 69 ERAERTAQLLRGLGLDPVLVRRVAVAAGGGPEGAARTARYEA-LAAAAAQLGARVALGHT 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV + R + ++GM D W RP L RR R + + Sbjct: 128 LDDQAETVLLGLGRGSGPR--SVAGMVPERTADGTTW-WRPLLGVRRATTREACADQGLP 184 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLT 243 +DP N D + R R+R V + L + + DL + +A+ L L Sbjct: 185 VWDDPWNADPAYTRARLRGEVLPLLEDVLGGGVAPALARTADLLREDLDALDELAAAELA 244 Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + ++++ + + L +LR G Sbjct: 245 RLAGADELAARELGALPAALRRRVLRGWLRAAG 277 >gi|323486908|ref|ZP_08092224.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum WAL-14163] gi|323691956|ref|ZP_08106205.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] gi|323399771|gb|EGA92153.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum WAL-14163] gi|323503965|gb|EGB19778.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] Length = 246 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V +SGG DS+ LL ALH + + + SAI+VD ++ V +C Sbjct: 22 SGDKIAVGISGGKDSLTLLYALHGLKRFYP-NEFELSAITVDLGF---ENFDLSPVRSLC 77 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 S L + +VV K ++ A + R ++E AK + I AH DD Sbjct: 78 SELSVPFTVVPTDIGKILFETRKESNPCALCAKMRKGALNETAKQMGCNKIAYAHHRDDL 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ + +G + T L L + RP + D+ F + ++ C++ Sbjct: 138 IETMLLSLI----YEGRFYAFSPKTFLDRTELTVIRPMIYVSEADVIGFKNRFSLPVCKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 P D + +R V++ + ++L A +K + F + Sbjct: 194 PCPVDGKTKREYVKQLTKQLNLQAPGVKERLFHAI 228 >gi|225022109|ref|ZP_03711301.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii ATCC 33806] gi|224945042|gb|EEG26251.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii ATCC 33806] Length = 301 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 22/204 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +R VR+L +L+ +SGG+DS+GL+ A + D A+ VDH L+ + Sbjct: 18 KLRRAVRALASEDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSA 70 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + L V + + A AREARY + A + + AHT Sbjct: 71 TVADRAVAMARSLGAEARSVKVQVKP--GNIEAQAREARYKALMTAAAAES-RSVWVAHT 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET + S R A GM +SG + RPFL RR D + + + Sbjct: 128 MDDQAETYLLGSLRGRAV-GMPVSG-----------TVIRPFLSVRRADTVAACAELGLE 175 Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211 DP N D RF RVRVR V + Sbjct: 176 VWHDPMNADPRFRRVRVRTEVLPL 199 >gi|108563137|ref|YP_627453.1| hypothetical protein HPAG1_0712 [Helicobacter pylori HPAG1] gi|107836910|gb|ABF84779.1| hypothetical protein HPAG1_0712 [Helicobacter pylori HPAG1] Length = 338 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------KNIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K + AR+ RY + + ++ A Sbjct: 55 RLEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLMREYSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAKD 167 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + + ED SN+ +F+R R+ + + Sbjct: 168 QK--FFEDDSNSSLKFKRNFFRKHYANALMQ 196 >gi|257792629|ref|YP_003183235.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243] gi|257476526|gb|ACV56846.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243] Length = 371 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 110/315 (34%), Gaps = 44/315 (13%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAH 84 VSGGSDS L + + G++ + V+H LR E A ++ R+V+ + L + Sbjct: 33 VSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLDVPL 90 Query: 85 S----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFDDQL 132 ++ + + + A AR RY + A + I+TAHT DD++ Sbjct: 91 FSCEIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTADDRV 150 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF------------ 180 E+ YMRS G + N + RP L RE++R++ Sbjct: 151 ESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGAPVA 203 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNA 233 W ED +N R VR + L L M D + + Sbjct: 204 CDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDMLEDM 263 Query: 234 VAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 V L+ ++ A ++ L + + + G+ + S+E V Sbjct: 264 VDGLMAGHVEALGDEYDAGCVLAPAFGAEPLPLRRRAVMRALQLMLGRDARVETASVEAV 323 Query: 291 MLFLKSGKRGCVSIG 305 + G G Sbjct: 324 LAAFDDEAGGKPRSG 338 >gi|50955662|ref|YP_062950.1| hypothetical protein Lxx21520 [Leifsonia xyli subsp. xyli str. CTCB07] gi|61216490|sp|Q6ACP8|TILS_LEIXX RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50952144|gb|AAT89845.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 332 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 110/314 (35%), Gaps = 18/314 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L A +L+ +SGG+ L + + + AI VDH L+ + + Sbjct: 26 HPLAPGALVLIGLSGGA---DSLALAAAAAFEAPRAGFRSGAIVVDHGLQPGSAEVAAGA 82 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + L + +V + G AAR AR+ A+ A I+ AHT DDQ E Sbjct: 83 ACQARALGLGPVLVERVRVEAAGGPEGAARAARHTAFDSAARATAAARILLAHTLDDQAE 142 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 TV + R + + RPFL RR R+F + +DP Sbjct: 143 TVLLGLARGSGPSSLQGM-------LPDTGRLLRPFLGLRRATTRAFCADSGLEPWDDPH 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYL--------KMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N D + RVRVR V + L ++ ++ +++ + ++ Sbjct: 196 NDDPAYTRVRVRSAVLPVLEQELGPGVAEALARTAEQLREDDQALDSLALEGAQELVSQA 255 Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305 +A+ L L + +SL ++ L +G +S+ Sbjct: 256 DDGSVALEVRGLAAGPPALRQRIIRLVVSAEFGVSLSRSHTLAVAALIADWHGQGPLSLP 315 Query: 306 RVVIDRRANFLWIT 319 V + R+ L Sbjct: 316 GVRVVRQNGLLTFH 329 >gi|311107714|ref|YP_003980567.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8] gi|310762403|gb|ADP17852.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8] Length = 354 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 28/335 (8%) Query: 4 SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I ++R + +L P I VA+SGG+DS L + +++ + + V H L Sbjct: 26 ELITALRRALLALPERPPRIAVALSGGADSAMLAVHAAALVRELGM---ELMLFHVHHGL 82 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATL 121 ++ A ++V + L + SV + ++ G+ AAAR+ARYA +++ A+ T Sbjct: 83 QDAADAWTQHVRTLADLLALPLSVARVEVAQAAGKGIEAAARDARYAALAQLAREQGVTH 142 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I+ AH +DQ ETV +R R GM + L RP+L R+ I Sbjct: 143 ILLAHHRNDQAETVLLRLLRGTGLAGMAAM---APVSRRDGLLYLRPWLEVDRDAILHAA 199 Query: 182 LQR----NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +DP+N D + R +R + + L A + + + A + Sbjct: 200 DAVAAATGWRPVQDPTNADPHYTRAALRELLAPV-LDARWPGWRGIVARHARHMGEAAEI 258 Query: 238 IPKYLTVHMR-------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 + + Q + ++LR G +P M + Sbjct: 259 LDEVAREDFATLDPSGDGASFSLQAWRGLSEARQAHVLRHWLERNG--ARMPTDARMRDL 316 Query: 291 MLFLK------SGKRGCVSIGRVVIDRRANFLWIT 319 + L+ ++ V VI +W+ Sbjct: 317 LRQLRGLHSLGHDRQLRVEQAGHVIRCHRGRVWVE 351 >gi|197106556|ref|YP_002131933.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Phenylobacterium zucineum HLK1] gi|196479976|gb|ACG79504.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Phenylobacterium zucineum HLK1] Length = 411 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 86/411 (20%), Positives = 144/411 (35%), Gaps = 31/411 (7%) Query: 14 RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 R L+ + + VAVSGG DS+ L + + + H L + Sbjct: 14 RHLLKGSRRPLAVAVSGGGDSVALALIAEGWARRSRRDLLLLTLD---HGLNPDSAAWTG 70 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + RL ++W KP +GL AAAR AR+ L++E A+ A +I+ HT DD Sbjct: 71 RCEALAQRLGRPFRALAWTGPKPASGLPAAARAARHRLLAEAAREAGARVILMGHTADDV 130 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E MR+ + + +++ RP L RR ++R +L R +W ED Sbjct: 131 AEAQVMRAAGATTPEPR-VWAPSPAWPEGRGVFVLRPLLDVRRAELRDWLSARGETWIED 189 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 P+N D RF + L + A+ + L V + A Sbjct: 190 PANADPRF------------ARARARRALPADTPLERQEPAPAAIPFEERLGVLDVARAA 237 Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 + L L ++ GG P R+ L+ ++ I+ Sbjct: 238 FRAS----PAGLAERWLAMACVCAGGGSRRPPGVRAARLSAALRGDGPVLATLAGGRIEA 293 Query: 312 RANFLWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSD--SLIQIGPQSYRKADV 364 + I R L L L + VWDGR++ + ++ + R D Sbjct: 294 DTTAIRIFREAGEAARGGLAALSLPRSQAVVWDGRFELLAPRPGLEVRRLAGLASRLPDA 353 Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP--VAYAFSISFG 413 + A ++P+ G+ + P + VA + G Sbjct: 354 ERRRLQAVPAAARGALPTILDGERVSCPLLSDTPAVQVRGLVADRLRAAAG 404 >gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88] gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger] Length = 645 Score = 143 bits (362), Expect = 4e-32, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 65/266 (24%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISVDHCLRETA 66 R V L P + +A+SGG+DSM L + S K +A VDH RE + Sbjct: 38 RHHVSHL--PRRLGLAISGGADSMALAYLCKQWERTQTQTSDEKTSVTAFVVDHKAREES 95 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125 E V+ + + ++ AR R+ + + + + ++ Sbjct: 96 TREANMVAGWLDDMGLQTQILPLTWPSHHISAFETHARRLRFQALGQACRAHSIETLLMG 155 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC------------DTILYDLNLWISRP----- 168 H DD +ET R +G GL+G+ ++ + +P Sbjct: 156 HHQDDNVETTLWRLC--TGARGAGLAGIPAVTRIPECHGLFGVAESGSSITLLKPGNSDY 213 Query: 169 ---------------------------------------FLRCRREDIRSFLLQRNISWC 189 L ++++ + NI + Sbjct: 214 RIKTTNTNELKLTGSSSNTTQHQQTKYKIATGGISIARPLLAFPKQNLLATCKANNIPYV 273 Query: 190 EDPSNTDDRFE-RVRVRRFVRDIDLH 214 EDP+N D R +R + + L Sbjct: 274 EDPTNFDPTLTPRNAIRSLLAERKLP 299 >gi|325832756|ref|ZP_08165519.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1] gi|325485895|gb|EGC88356.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1] Length = 372 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 111/318 (34%), Gaps = 44/318 (13%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81 L+ VSGGSDS L + + G++ + V+H LR E A ++ R+V+ + L Sbjct: 31 LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 88 Query: 82 IAHS----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFD 129 + ++ + + + A AR RY + A + I+TAHT D Sbjct: 89 VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 148 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF--------- 180 D++E+ YMRS G + N + RP L RE++R++ Sbjct: 149 DRVESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 201 Query: 181 ---LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230 W ED +N R VR + L L M D + Sbjct: 202 PVACDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDML 261 Query: 231 NNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 V L+ ++ A ++ L + + + G+ + S+ Sbjct: 262 ERMVDGLMAGHVEALGDEYDAGCVLALAFGAEPLPLRRRAVMRALQLMLGRDARVETASV 321 Query: 288 ERVMLFLKSGKRGCVSIG 305 E V+ G G Sbjct: 322 EAVLAAFDDEAGGKPRSG 339 >gi|257068456|ref|YP_003154711.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810] gi|256559274|gb|ACU85121.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810] Length = 364 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 27/236 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +LV +SGG+DS+ LL V + ++ A VDH L++ + RL Sbjct: 38 RLLVGLSGGADSLALLATAVWVGTRMG---LETEAAIVDHGLQDGSAQVAERALVQAERL 94 Query: 81 RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 A V+ + GL +AR AR+ + + A ++ AHT DDQ E V M Sbjct: 95 GAAAHVLPVEVDLAAPGGLENSARAARHDALETLRRERGALALLMAHTLDDQAEQVLMGL 154 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--------CRREDIRSFLLQRNISWCED 191 R + LSG+ T + RPFL RR D ++ W ED Sbjct: 155 ARGGGPR--ALSGIPRTR-----GALLRPFLGTGRDERTALRRADTEEICRLHDLEWWED 207 Query: 192 PSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDL----RVKVNNAVAMLIP 239 P N D+ R RVR +R+I L + + DL ++ A L+ Sbjct: 208 PMNADETLLRSRVRHRALPLLREILGEHLDENLARTADLVGPDAEHLDAEAAALLE 263 >gi|51210035|ref|YP_063699.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata var. liui] gi|61216496|sp|Q6B8L1|TILS_GRATL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50657789|gb|AAT79774.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata var. liui] Length = 320 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 63/278 (22%), Positives = 111/278 (39%), Gaps = 22/278 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FLS I ++L+ P IL+A+SGG DS+ L+ + + + + I +DH Sbjct: 10 FLSIIPKY----KNLIKPLSILIALSGGKDSLCLVKLIEDFNNTYNHFS-RIEYIYIDHQ 64 Query: 62 LRETAKDEVRYVSDVCSRLRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 R +K ++++ + I+ + ++ +K + A R RY I HA + Sbjct: 65 WRSDSKQNIKHLLNY-----ISITNNNTYIYQINKMEIS-EANMRNIRYQAIVRHAIQNS 118 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 +I+T H DQ+ET + R +G+ I + + RP + D+ Sbjct: 119 HDIIVTGHNQTDQVETFLLNLMRGTGLEGLSSLPYIRKIT--DQIQVIRPLIHINTGDVL 176 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAV 234 F + N+ D +N R R+R + + K++ F L N + Sbjct: 177 WFCRKFNLPIWSDKTNFYYTNFRNRIRYELLPYLKEYFHPKIESNIINFLSLSSIENEYI 236 Query: 235 AM-LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRV 270 I YL IAI+ I+ N L +L + Sbjct: 237 KQNSIKLYLASRHSHYIAINYKIIKNQHLALQKRVLNI 274 >gi|331091115|ref|ZP_08339957.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405337|gb|EGG84873.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium 2_1_46FAA] Length = 244 Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + HI V +SGG DS+ LL ALH + K + SAI+VD + ++ V + Sbjct: 20 IQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLG---YSDFDLTPVEN 75 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + +V + ++ + + R ++E K + + AH D Sbjct: 76 LCRELDVPYKIVKTDIGRILFEERKESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ + +G S T L ++L + RP + D+ F + N+ Sbjct: 136 DIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEADVIGFKNKYNLPVV 191 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ++ + D +R + V+ ++ K + F + Sbjct: 192 KNKCSVDGHTKRQYAKELVKQLNTEHNGAKERMFTAI 228 >gi|227502055|ref|ZP_03932104.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725] gi|227077210|gb|EEI15173.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725] Length = 297 Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 29/263 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V +SGG+DS+ L A+ + D A+ VDH L++ ++++ + L Sbjct: 5 VGVGLSGGADSLALCAAMIAEGHD-------VIALCVDHGLQDGSREQAEKAAWQAESLG 57 Query: 82 IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATL-------IMTAHTFDDQLE 133 V+ + + L A AR+ARY +S A+ A+ I AHT DDQ E Sbjct: 58 ARARVLVVRVPEEAGNSLEAVARQARYQAMSAAAREDGASRRGGGPLEIAVAHTADDQAE 117 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + + R ++GM + + + + RPFL+ RR D + + +DP Sbjct: 118 TLLLGALRGR------VAGMPERAVVE-GARVVRPFLQVRRADTEGACAELGLDVWQDPQ 170 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 N D F RV +RR + + D + A + + A Sbjct: 171 NADTDFRRVALRREIIPELSRVIG------GDAVPALAQAAMDTARDEEYLATAAT-ADC 223 Query: 254 QDILNIDSTLLFYLLRVSAAICG 276 ++ + + G Sbjct: 224 AELAALPEPRRRRAIAAWLIERG 246 >gi|317180489|dbj|BAJ58275.1| hypothetical protein HPF32_0693 [Helicobacter pylori F32] Length = 343 Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 VR F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 VRDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ + R Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKTLVKDR 173 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 174 --EFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|303286641|ref|XP_003062610.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456127|gb|EEH53429.1| predicted protein [Micromonas pusilla CCMP1545] Length = 758 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 9/194 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +++SGG DSM L + L + D S+G A+ +D+ R + E +V C R+ Sbjct: 279 VGISLSGGVDSMALAVILKRLSRDASYGGFDVVAMHIDYDNRPESGVEADFVRGWCDRMG 338 Query: 82 IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I V + P+ A +R RY + AKT + H D E + Sbjct: 339 IECVVRKIAEVTRGVTPREQYEAESRAIRYGFYKDVAKTHAFPAVFVGHHEGDVQENIIA 398 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + ++GM +T + + + I RP L + + F + + + D + T Sbjct: 399 NLMRGANL--LAVNGMEETGVVE-GVAIWRPMLPHSKAVVLDFAHKYGVPYFLDSTPTWS 455 Query: 198 RFERVRVRRFVRDI 211 R ++R + + Sbjct: 456 --TRGKLRNQLVPL 467 >gi|239929771|ref|ZP_04686724.1| cell cycle protein [Streptomyces ghanaensis ATCC 14672] gi|291438097|ref|ZP_06577487.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672] gi|291340992|gb|EFE67948.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672] Length = 341 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 116/305 (38%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +L A SGG+DSM L AL ++ ++VDH L+ + V L Sbjct: 42 VLAACSGGADSMALASALAFEAPRLG---LRAGGVTVDHGLQAGSDQRAADVVLRLRELG 98 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 99 LDPVESVAVSVGRDGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 158 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R + +++S +DP N D + R Sbjct: 159 GSGIR--SLSGMAAVS--GAGGRYRRPFLQLDRQTARKACMVQSLSVWDDPHNADPAYTR 214 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDI 256 R+R AL + +++ A + + + + Sbjct: 215 SRLRHEGLPALEKALGKGVVGALARTAQLSRDDADALDAWAGRAAAGVRDADGNLECAGL 274 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314 + + +LR++A G R +E V + G+ GRVV R+ Sbjct: 275 RALPPAVRRRVLRLAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVARRQGG 334 Query: 315 FLWIT 319 L I Sbjct: 335 RLVIR 339 >gi|3929907|emb|CAA10333.1| hypothetical protein [Wolinella succinogenes] Length = 210 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 74/205 (36%), Gaps = 12/205 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 L+ SGG DS L L +I F V++ R AK+E Y ++ R Sbjct: 16 GKNLLGFSGGVDSTALFFLLLE-------REIPFDIALVNYHQRAQAKEEESYAKELAHR 68 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + +S + AR RY ++ AH D+LE + MR Sbjct: 69 HQKRCFTLSCPLGP--SNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRL 126 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + + L G + L + RP +E + +L Q I + ED SN D + Sbjct: 127 AQGSSL--STLLGFSSREIR-LGYELIRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ 224 R R R + ++ F+ Sbjct: 184 LRNRFRPLSETLLQEHAQGLLQSFR 208 >gi|308063486|gb|ADO05373.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Sat464] Length = 338 Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + V K + AR+ RY K + ++ AH Sbjct: 56 LEIIQHAQKLAQAHHKKCYVH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L +E +++ Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKETLKTLAK-- 166 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 167 DWEFFEDSSNSSLKFKRNFFRKNYANSLMQH 197 >gi|308182889|ref|YP_003927016.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori PeCan4] gi|308065074|gb|ADO06966.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori PeCan4] Length = 338 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQKLAKTHHKKCYIH--YAPKIACNFEMQARKIRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK- 166 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 ++ + ED SN+ +F+R R+ + + Sbjct: 167 -DLKFFEDSSNSSLKFKRNFFRKHYANALMQH 197 >gi|301106300|ref|XP_002902233.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans T30-4] gi|262098853|gb|EEY56905.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans T30-4] Length = 665 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 18/287 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +H+ V++SGG DSM + +H + G A+ +D+ R + E YV C R Sbjct: 225 SHMAVSLSGGVDSMVVAYLMHKLKEK--HGDFTIVAVHLDYGNRPESGAECDYVRRWCER 282 Query: 80 LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I V K T +RE RY+ +E + + + H D E V Sbjct: 283 FGIVFHVRRIDEVKRATTRRDDYEKISREIRYSTYAEVMQKYHIPGMCFGHHRGDVQENV 342 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + + + L+GM + + + I RP L ++ I F + + + +D + Sbjct: 343 ISNMMKGLSL--LNLNGMQASSVV-NGVRIWRPLLDLEKDVIFEFAHRYGVPYFKDTTPK 399 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-----RSII 250 R ++R + + + A L+ + + +S + Sbjct: 400 WS--TRGKLRNHLVPLLRDMYGDGFLNNLSALGAESTQCAELVDSRVLAPIMKTVGQSDV 457 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGG--QISLPGYRSMERVMLFLK 295 A+ D + F V IC S+ + + ++ L+ Sbjct: 458 AVWVDCGLLKDQSFFVWKEVFRQICHSIMGNSMVREKPLHELIQKLQ 504 >gi|237752872|ref|ZP_04583352.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430] gi|229375139|gb|EEO25230.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430] Length = 334 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 12/206 (5%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 +R + L+A S G DS L L I F VD+ +R+ ++ Sbjct: 2 LRLEFLEFLRDKRNLLAFSAGVDSSALYFLLREC-------GISFDIAIVDYGIRKQSRL 54 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 EV +C V + + AR+ RYA E + N ++ AH Sbjct: 55 EVDRAKTLCF-WDKRQCFVKVEEPILKD-FEHTARKVRYAFFEEIIQAQNYHNLILAHQL 112 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D E M+ + + M I+ + + RP L+ R++I +L +R I + Sbjct: 113 NDAFEWFLMQFCKGSSLLKMQGCYKRQGIV---DYRVVRPLLKTSRQEILEYLNKRKIFY 169 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214 ED SN D +F R R+ + L Sbjct: 170 FEDFSNLDSKFLRNAFRKKFSNPLLE 195 >gi|159126807|gb|EDP51923.1| PP-loop family protein [Aspergillus fumigatus A1163] Length = 661 Score = 142 bits (359), Expect = 8e-32, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 82/278 (29%), Gaps = 72/278 (25%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +AVSGG+DSM L + + +A VDH RE + E R V+ S Sbjct: 45 PRNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLS 104 Query: 79 RLRIA-------------------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + + W + AR R+ + + Sbjct: 105 DMGKPDDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRI 164 Query: 120 TLIMTAHTFDDQLETVYMRS---QRDYAEKGM----------GLSGMCDT------ILYD 160 + ++ H DD +ET R R G+ GL G+ ++ D Sbjct: 165 SALLMGHHQDDNVETTLWRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSMVILRPRD 224 Query: 161 ---------------------------------LNLWISRPFLRCRREDIRSFLLQRNIS 187 + + RP L + + + Q I Sbjct: 225 NSAGAPCARSGSTTTSQVQGKDEGKQPGFPMATGGILLCRPLLAFPKASLLATCHQHRIP 284 Query: 188 WCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ 224 + DP+N D R +R V L ++ Sbjct: 285 YVSDPTNFDPTLTPRNAIRSLVSPTFPPRLPRALQAAS 322 >gi|256833319|ref|YP_003162046.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603] gi|256686850|gb|ACV09743.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603] Length = 339 Score = 142 bits (359), Expect = 9e-32, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 111/323 (34%), Gaps = 30/323 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + VA SGG+DS+ + L V R + + SA VDH L + + Sbjct: 23 PPGTRVAVACSGGADSLAVAATLAHVGPRRGW---QISAFIVDHDLHPDSAQVSVVAARQ 79 Query: 77 CSRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L H V+ + G AAAR ARYA + +I+ HT DDQ E Sbjct: 80 LIDLGFPHVTITRVTVAHGPGHGGPEAAARTARYAALDRLRTQHGVDVILLGHTRDDQAE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 +V + R + + + + RPFL R ++ DP+ Sbjct: 140 SVLLGLARGSGARSL-------SGIRPRTGHYVRPFLSLTRAATEEICSLHEVNVWHDPT 192 Query: 194 NTDDR---FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH----- 245 NTD R +VR V + + L + + +A A + ++ Sbjct: 193 NTDITPQGPLRSQVRGVVIPLMENVLGPGVADALARTADLLHADAEALEQWARTAQADVT 252 Query: 246 ------MRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-- 296 + + L + + + +LR +A G S R + + + Sbjct: 253 ITTTNTAEGQVHLDLTALAALPTAIRHRVLRATALAVGAPASAVSLRHIHALDHLITQWH 312 Query: 297 GKRGCVSIGRVVIDRRANFLWIT 319 G+ G + + R++ L Sbjct: 313 GQGPTYLPGAISVRRQSGTLVFE 335 >gi|37519970|ref|NP_923347.1| hypothetical protein gvip035 [Gloeobacter violaceus PCC 7421] gi|35210962|dbj|BAC88342.1| ycf62 [Gloeobacter violaceus PCC 7421] Length = 278 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 105/273 (38%), Gaps = 13/273 (4%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109 + +DH R ++ + + V+ +C+ + + ++ AAAR RY Sbjct: 8 GLHLHVGHLDHRWRPGSERDAQRVAVLCNVWGVPFH---LEIARTPPASEAAARAWRYCW 64 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + + A+ + ++T HT D+ ETV R G+G + + RP Sbjct: 65 LEQIARGLALERVVTGHTLSDRAETVLFNLLRGSGGAGLGSLDW--ERPLGGGVRLVRPL 122 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 L R + ++ L ++ C D SN + F R R+R + +++ Sbjct: 123 LGITRAETGAYCLAHHLPICIDESNANLTFRRNRIRLELMPYLREHFNPLVEQTLARTGD 182 Query: 230 VNNAVAMLIPKYLTVHMRSIIAI----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + +A + L+ L H S++ + + L +R ++ G+ P + Sbjct: 183 ILHAESELLESLLDEHWHSLVQEGRLHRNTLAALPLALQRRAVRRWLSVGLGRQ--PNFE 240 Query: 286 SMERVMLFLKSGKRGCVS--IGRVVIDRRANFL 316 + V+ L + R S ++++ + +L Sbjct: 241 HIAAVLGCLSAPNRTRTSPLAHSLLVEVQGEWL 273 >gi|210612743|ref|ZP_03289458.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787] gi|210151436|gb|EEA82444.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787] Length = 244 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + HI V +SGG DS+ LL ALH + K + SAI+VD E + V Sbjct: 18 QMIQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-NKFELSAITVDLGY-EEFDLDP--V 73 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++C L + + VV + ++ + + R +++ K + + AH Sbjct: 74 HELCQELGVPYKVVKTDIAHILFEERKESNPCSLCAKMRKGALNDAVKEMGCNKVAYAHH 133 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + +G S T L ++L + RP + D+ F + N+ Sbjct: 134 KDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPIMFVDEADVIGFKNKYNLP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R + VR ++ K + F + Sbjct: 190 VVKSKCPVDGYTKRQYAKELVRQLNTEHPGAKNRMFTAI 228 >gi|319957784|ref|YP_004169047.1| tRNA(ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511] gi|319420188|gb|ADV47298.1| tRNA(Ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511] Length = 344 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 108/309 (34%), Gaps = 28/309 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V L+ + L+A S G DS L L I F V++ +R A++E Sbjct: 14 VTRLLINKNNLLAFSHGLDSTALYHLLKE-------SDIPFDIALVNYGVRPEAEEEEAA 66 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 R + ++ A AR RY ++TAH +D+L Sbjct: 67 --ARELARRDKRRIFVAHAPGFRSNFEAEARRFRYDFFESLIDEHGYENLLTAHQLNDRL 124 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCE 190 E + MR R + + RP L + ++ +L R + W E Sbjct: 125 EWMMMRLIRGAGTVELAGMEAVAKRFTASGTPYRLIRPLLETPKYELEHYLRSRGVEWFE 184 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 D SN D +ER R+R + + + F + A L Y ++ ++ Sbjct: 185 DSSNASDTYERNRLRPLLEPLVRRHASGIARSF----DYLAEDAAYLRRGYRELYREKLL 240 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-I 309 I + ++ + +A LP Y+ E + + +GR + Sbjct: 241 RI------LQVSVPSLIPLATAETLKKLSYLPSYKERELLRQHSS------LVLGRRWAV 288 Query: 310 DRRANFLWI 318 +RR + L+I Sbjct: 289 ERRGDLLFI 297 >gi|317012538|gb|ADU83146.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Lithuania75] Length = 338 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 20/212 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKTYLEPLREGQNLLGFSGGLDSTCLFHLLVG-------ENIDFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K + AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 168 QK--FFEDDSNSSLKFKRNFFRKHYANALMQH 197 >gi|315503391|ref|YP_004082278.1| tRNA(ile)-lysidine synthetase [Micromonospora sp. L5] gi|315410010|gb|ADU08127.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. L5] Length = 316 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 116/317 (36%), Gaps = 14/317 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+ L + + ++VDH L+ + Sbjct: 4 AVRRVLTGLPGGGPVLVACSGGA---DSLALAAATAFVAPRLGRQAGLVTVDHGLQAGSA 60 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + V+D + V+ + G AAAREARY + A+ +A ++ H Sbjct: 61 ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAAARRYDAAGVLLGH 120 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R +G LSGM + D + + RP L R D R+ + Sbjct: 121 TRDDQAETVLLALARGAGPRG--LSGMPERRDVD-GVPLLRPLLDVPRADTRAACEALGL 177 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKY 241 DP N D + R RVR V + AL + L A+ Sbjct: 178 DPWADPHNADPAYARARVRSDVLPGLVDALGPGVVANLARTAGLLAADNAALDALADAAL 237 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299 V + + + + +L A G + +R + + + + G+ Sbjct: 238 ADVRTADRGLSVAGLAELPAAVRTRVLHAWARELGATPAALSHRHVAALDALVTAWRGQG 297 Query: 300 GCVSIGRVVIDRRANFL 316 G + R A L Sbjct: 298 PVHLPGNHQVRRHAGHL 314 >gi|315586602|gb|ADU40983.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Helicobacter pylori 35A] Length = 343 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ESIAFDIALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++F Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTFAK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|218677908|ref|ZP_03525805.1| tRNA(Ile)-lysidine synthetase [Rhizobium etli CIAT 894] Length = 244 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 58/241 (24%) Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 A + ++ +H + + D L D +L Y L A+ GGQ PG MER++ F Sbjct: 4 AEWLDRHFRLHGGLLGQVMPDGLRQDRAILDYALGRLTAVFGGQPFAPGRAQMERLLSFA 63 Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354 G+ G ++ GRVV D R + L++TR R + L+L P E VWDGR + N S ++I Sbjct: 64 TGGEPGRMTAGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRLKAVNRSGMTVEI 123 Query: 355 G-------------------------PQSYRKADVPS-------------------GIPP 370 P ++ ++ P G+P Sbjct: 124 EGPAAPSVIPVLVTGIQPPRVGAVNDPTTHDESSAPKDLGALDSCDEHRNEGGEGRGLPK 183 Query: 371 IIAQRALSSMPSKEGG--------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416 +RA++S P G P APF RF+T+FD A S F Sbjct: 184 AAWKRAIASAPVLSAGGVPLSPESEPTIHLTPYFAPFDRFLTRFDFIFANRLSAVFATAP 243 Query: 417 I 417 Sbjct: 244 Y 244 >gi|239980354|ref|ZP_04702878.1| cell cycle protein [Streptomyces albus J1074] gi|291452216|ref|ZP_06591606.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074] gi|291355165|gb|EFE82067.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074] Length = 412 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 129/322 (40%), Gaps = 32/322 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ I+VDH L+ + V + L Sbjct: 97 VLVACSGGADSMALASALAFEAPRLG---IRAGGITVDHGLQYGSDARAADVVARLTALG 153 Query: 82 IAHSVV----------------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + G AAAR+ARYA + E A+ + A ++ Sbjct: 154 LDPVESAAVRVAAASDRTAHGAPYAGGARRVGPEAAARDARYAALDEAAERLGAAAVLLG 213 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + LSGM + RPFL+ R+ R+ L ++ Sbjct: 214 HTRDDQAETVLLGLARGSGIR--SLSGMAAVS--GDSGRYRRPFLQLDRQTARTACLAQS 269 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +DP NTD + R R+R AL + + +++ A + + Sbjct: 270 LPVWDDPHNTDPAYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAARE 329 Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSG 297 ++ + + + + + + +LR + GG + ++R++ + G Sbjct: 330 EAAVRDETGELDCARLYALPAAVRRRILRRALVAAGAPGGSLFARHVEEVDRLITGWR-G 388 Query: 298 KRGCVSIGRVVIDRRANFLWIT 319 +R G+V R+ L + Sbjct: 389 QRAINLPGKVEARRQGGRLVLR 410 >gi|315655902|ref|ZP_07908800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii ATCC 51333] gi|315489966|gb|EFU79593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii ATCC 51333] Length = 415 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 134/369 (36%), Gaps = 61/369 (16%) Query: 8 SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P + +A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPLP-WDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT---- 120 + E + L A +V+ + G AR R+ L+++ A + T Sbjct: 91 SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS----------GMCDTILYD-------- 160 +I+T HT DDQ ETV +R R + + + G+ + Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLRSISAMREFESLDCQTGLPLRFAWGEEDSGADA 210 Query: 161 -LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---------TDDRFERVRVRRFVRD 210 ++L ++RP L RR + Q + DPSN D R +R V Sbjct: 211 VVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSNRMEGPVKTAADQPLPRAAIREQVMP 270 Query: 211 IDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-------------- 255 AL L + +L V +I S D Sbjct: 271 ALASALGQDPAPALARLAGQAAADDTILEALAGEVFWEVLIDESGDRDREDSVKLNLKAI 330 Query: 256 -------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307 ++ + +L ++R ++ + G ++ + V+ ++ +G +++ + Sbjct: 331 EDYKYHNLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVNLIRDWHGQGPLTLPGI 390 Query: 308 VIDRRANFL 316 + RR NFL Sbjct: 391 TVTRRGNFL 399 >gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326197251|gb|EGD54442.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 317 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 76/328 (23%), Positives = 117/328 (35%), Gaps = 30/328 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +VR F + + VA+SGG+DS+ L A ++ A+ VDH L+ Sbjct: 10 VGAVRGFADRFLDDGPVCVALSGGADSLALTAAAVR-------ARLVVHAVVVDHGLQAG 62 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + V + + G AAAR ARY + ++ Sbjct: 63 SAEVAARAAAAARESGATAEVRTVEVGSAG-GPEAAARTARYDALRAAR---GGRPVLLG 118 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + LSGM + RP L RR R Sbjct: 119 HTLDDQAETVLLGLGRGSGAR--SLSGMSEWSAPWG-----RPLLGLRRAQTREACADWG 171 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKY 241 + +DP N D F RVRVR V + L + + +A+ Sbjct: 172 LPIWDDPHNVDPGFTRVRVRSEVLPLLEDVLGGGVAEALARTAAQLQADADALDGPAADL 231 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299 L + + + + + L +LR G P YR + + + G+ Sbjct: 232 LAECAYGRVLDLEPLESAPTALRTRVLRGWLQSVG--APEPSYRVVASIGALVTDWHGQG 289 Query: 300 GCVSIG----RVVIDRRANFLWITRAVR 323 G R+V+ RRA L R R Sbjct: 290 PIAVGGDATARLVVTRRAGRLHAQRMSR 317 >gi|297627180|ref|YP_003688943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922945|emb|CBL57527.1| TRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 329 Score = 141 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 121/314 (38%), Gaps = 14/314 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R+ + + VA SGG DS+ +A + R + A+ VDH L+ +++ Sbjct: 23 RASEQGSRVRVACSGGPDSLA--LAAAVAVCARRDPALLAEALVVDHQLQPGSREVAHAA 80 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS--EHAKTINATLIMTAHTFDDQ 131 D L + V+ + G AAAR ARY ++ + A L++ HT DDQ Sbjct: 81 VDAVRGLGLPARTVAVQVPHSGEGPEAAARRARYEALAAPDAAGGRRPDLVLLGHTLDDQ 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R + + + RP L RR D ++ ++ D Sbjct: 141 AETVLLGLVRGSGIRSLAGM----PAHFGSAPQFWRPLLGVRRADTERACVEWGLAPWHD 196 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N DDRF R R+R V + L + + L + + + L LT M Sbjct: 197 PQNRDDRFTRSRLRHRVLPVLTAELGEGVIEALARTATLATQDADYLDALTSSALTTIMG 256 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + + + L L+R A G + ++ ++ + K + G Sbjct: 257 DGGLDCARLADQPAALQGRLVRRWLATVGIVGLDFERTAAVLALVTHWRGQKGVDLPGGH 316 Query: 307 VVIDRRANFLWITR 320 V+ R A L++ R Sbjct: 317 RVVRR-AGVLFLDR 329 >gi|329766712|ref|ZP_08258255.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136967|gb|EGG41260.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 304 Score = 141 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 21/257 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG DS+ LL ++ + S +F + AI++D + + + V + C++L Sbjct: 50 VAVAVSGGKDSLALLNVINQMKSTHNF---RIKAITIDEGIPGYRNEALEIVQEFCAKLN 106 Query: 82 IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + H V S+K +T + R I A I A +I T H Sbjct: 107 VEHKVFSYKELFDLTLDEALNLRGNEKTSSCSICGTLRRRAIDHAANDIGADVIATGHNL 166 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD L+T + K G D D L +PF +I + NI + Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMDPDTSDNTLRKIKPFCEIYESEIVFYAFTNNIPF 222 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +P + R +R F+ ++ +K +Q + +KV+ V K ++ ++ Sbjct: 223 QTEPCPHMNEGIRTEIREFLNSLEGKHSGIKNNLYQSI-IKVSQIVKDTNYKQKSICVKC 281 Query: 249 IIAISQDILNIDSTLLF 265 + I ++ + +L Sbjct: 282 GNECTGKICSVCNLVLR 298 >gi|297379927|gb|ADI34814.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori v225d] Length = 343 Score = 141 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIEHNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ + R Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLVKDR 173 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 174 --EFFEDSSNSSLKFKRNFFRKNYANSLMQH 202 >gi|291528871|emb|CBK94457.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale M104/1] Length = 247 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 15/215 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + S + AI+VD +++ V +C Sbjct: 24 DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLKPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLTIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR +++ +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230 >gi|308062050|gb|ADO03938.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Cuz20] Length = 338 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVE-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 56 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ ++ R Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTFKTLAKDR 168 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 169 --EFFEDDSNSSLKFKRNFFRKNYANSLMQH 197 >gi|317182038|dbj|BAJ59822.1| hypothetical protein HPF57_0748 [Helicobacter pylori F57] Length = 343 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDIALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|315656172|ref|ZP_07909063.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493174|gb|EFU82774.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 415 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 77/369 (20%), Positives = 134/369 (36%), Gaps = 61/369 (16%) Query: 8 SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P + +A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPLP-WDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT---- 120 + E + L A +V+ + G AR R+ L+++ A + T Sbjct: 91 SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS----------GMCDTILYD-------- 160 +I+T HT DDQ ETV +R R + + + G+ + Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLRSISAMREFESLDCQTGLPLRFAWGEEDSGADA 210 Query: 161 -LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---------TDDRFERVRVRRFVRD 210 ++L ++RP L RR + Q + DPSN D R +R V Sbjct: 211 VVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSNRMEGPVKTAADQPLPRAAIREQVMP 270 Query: 211 IDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-------------- 255 AL L + +L V +I S D Sbjct: 271 ALASALGQDPAPALARLAGQAAADDTILEALAGEVFWEVLIDESGDRDREDSVKLNLKAI 330 Query: 256 -------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307 ++ + +L ++R ++ + G ++ + V+ ++ +G +++ + Sbjct: 331 EDYKYHNLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVNLIRDWHGQGPLTLPGI 390 Query: 308 VIDRRANFL 316 + RR NFL Sbjct: 391 TVTRRGNFL 399 >gi|323357530|ref|YP_004223926.1| ATPase PP-loop [Microbacterium testaceum StLB037] gi|323273901|dbj|BAJ74046.1| predicted ATPase of the PP-loop superfamily [Microbacterium testaceum StLB037] Length = 332 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 17/321 (5%) Query: 6 IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR VR+ + ++VA+SGG DS L + + I+ A+ +DH L+ Sbjct: 11 VAEVRRAVRAALERIDGSVVVALSGGPDS---LALAAATAFEAPRAGIRAEAVVIDHGLQ 67 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + ++ L + VV+ + G AAAREARYA ++ A I A ++ Sbjct: 68 DGSDAVAAAAAEKARALGLDARVVTVQVGS-GDGPEAAAREARYAGLARAAADIRADAVL 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ETV + R LSGM RP L RR + Sbjct: 127 LGHTLDDQAETVLLGLARGAGA--ASLSGMAPERRDATGPTWVRPLLAVRRRVTVAACAA 184 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVA 235 + DP N D + RVRVR V + AL ++ ++ + + Sbjct: 185 EGLDPWTDPHNADPAYTRVRVRERVLPVLEAELGPGVAEALARTAEQLREDAAAFQDMID 244 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 I + I + + + L ++R G +SL +++E L Sbjct: 245 ETIEDIVEHAEAGISLSAAALAANPAALRNRIVRYVVESEFG-VSLTRTQTLEVARLATD 303 Query: 296 SGKRGCVSIGRVVIDRRANFL 316 +G + + + R + Sbjct: 304 WRGQGPIDLPGCLARRAGGRI 324 >gi|269218250|ref|ZP_06162104.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str. F0332] gi|269212378|gb|EEZ78718.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str. F0332] Length = 351 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 70/269 (26%), Positives = 106/269 (39%), Gaps = 15/269 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 L+AVSGGSDSM L A V +VDH RE + DE V + + Sbjct: 31 LLAVSGGSDSMALAQAAVFVCRREGIVASSL---TVDHGWREGSADEAASVRSALEAMGV 87 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-NATLIMTAHTFDDQLETVYMRSQR 141 + V+ SK GL +AAR ARYA ++E A+++ ++ HT DDQ ETV M R Sbjct: 88 ESAGVARVESKGGGGLESAARAARYAALAEAARSMPGRAAVVCGHTADDQAETVLMGLGR 147 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--- 198 + + ++ + RPFL RR D+R L + W EDP+N D Sbjct: 148 GSGPRSIAGMPAVGACPGAPDVPLVRPFLGLRRADLRQALASEGVEWVEDPTNDVDSPVR 207 Query: 199 ------FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R VR +L + + + + + + A Sbjct: 208 AADGSLLRRAAVRHRCMPALEDSLGPGVVEALARTAAMIREDLSALDGFAEEIDAKLGAE 267 Query: 253 S--QDILNIDSTLLFYLLRVSAAICGGQI 279 +++ + L +LR A G + Sbjct: 268 PSVRELAGLPPALRTRILRRRAIDGGARP 296 >gi|254779293|ref|YP_003057398.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Helicobacter pylori B38] gi|254001204|emb|CAX29172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Helicobacter pylori B38] Length = 338 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQTLAKTHHKKCYIHH--APKIARNFEMQARQVRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK- 166 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 ++ + ED SN+ +F+R R+ + + Sbjct: 167 -DLKFFEDDSNSSLKFKRNFFRKHYANALMQH 197 >gi|303249015|ref|ZP_07335260.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ] gi|302489601|gb|EFL49541.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ] Length = 330 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 105/321 (32%), Gaps = 27/321 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 A +V SGG DS ++ L + A VDH LR + E C+ Sbjct: 20 GATWIVGFSGGPDS---VVLLAVLTVLAPRLGAHLEAAHVDHGLRPESAAEAADAEAFCA 76 Query: 79 RLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I + + GL A R ARYA E H DD E Sbjct: 77 AWNIPFHERRADVAGLARERGIGLEDAGRLARYAFFEELRGARPNAWTALGHQRDDLAED 136 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 MR R G+G D + I RP L R DI +F ++ DPSN Sbjct: 137 QIMRLIRGTGWPGLG-----GMAALDPSRRILRPLLMTPRSDIEAFADALSLPVVRDPSN 191 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIA 251 D + R RVR + L + + + + ++ + L Sbjct: 192 NDPAYRRNRVRNDI----LPRIAAENPRHGEAVARLWRQARIDEDFLEASLPDFPDPTAL 247 Query: 252 ISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRV-VI 309 + + + L L R + CG GQ S++ + +G+ G+ I Sbjct: 248 PMETLAGLHPALRLRLYRRALRACGPGQALAETLFSLDAAVAKRATGRVFQFPGGKTARI 307 Query: 310 DRRANFLWI------TRAVRN 324 RRA + TR R Sbjct: 308 GRRALVFRLKSGGSGTRENRR 328 >gi|291524808|emb|CBK90395.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale DSM 17629] Length = 247 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 15/215 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + S + AI+VD ++ V +C Sbjct: 24 DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLEPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR +++ +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230 >gi|293363922|ref|ZP_06610658.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2] gi|292552412|gb|EFF41186.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2] Length = 291 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 23/285 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+AVSGG DSM LL ++ + K A V++ R + + + V + C Sbjct: 5 DQPILIAVSGGPDSMFLL--------NKFYKKNYVIAAFVNYNQRSDSNIDQKIVEEFCF 56 Query: 79 RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + I + S + AR RY E K N ++ A DD +E ++ Sbjct: 57 KNNIVLEKLILNKSDYTKGNFQDWARITRYNFFKEMYKKHNCKKLLVAQHKDDFIENYFL 116 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTD 196 + R G+ + ++++ RP + ++ I ++ N+ + D +N + Sbjct: 117 QKTRKKDRLFFGIDKKSELF----DMYVERPLINRYFKKQIIKQNMKNNLIFANDYTNHE 172 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII--AISQ 254 +++R +R ++L + +K+F L++K+ N K + + A Q Sbjct: 173 PKYKRNEIR-----LELSNKSILLKEFLFLKIKLLNLKLSFKRKKIEYLFKKWKENAFDQ 227 Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + LN D + + + +E ++ F+KS R Sbjct: 228 NCLNKDKYNKYLVYKYLNNNFTNIN--LSSSKIESIIEFIKSDNR 270 >gi|305680519|ref|ZP_07403327.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC 14266] gi|305660050|gb|EFM49549.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC 14266] Length = 302 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 88/210 (41%), Gaps = 25/210 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL +VR S +L+ +SGG+DS+GL+ A + D A+ VDH Sbjct: 16 FLKLRRAVRALASS---EDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHG 65 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L+ + + L V + + A AREARY + A + Sbjct: 66 LQPDSATVADRAVAMARSLGAEARSVKVQVKP--GNIEAQAREARYKALMTAAAAES-RS 122 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AHT DDQ ET + S R A GM +SG + RPFL RR D + Sbjct: 123 VWVAHTMDDQAETYLLGSLRGRAV-GMPVSG-----------TVIRPFLSVRRADTVAAC 170 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + DP N D RF RVRVR V + Sbjct: 171 AELGLEVWHDPMNADPRFRRVRVRTEVLPL 200 >gi|158312163|ref|YP_001504671.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec] gi|158107568|gb|ABW09765.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec] Length = 608 Score = 140 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 149/402 (37%), Gaps = 40/402 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR V + +LVA SGG+DS+ L AL V R+ ++ ++VDH +T++ Sbjct: 12 AVRDAVADVPPGGLVLVACSGGADSLALAAALAFVAPRRA---LRAGLLTVDHGWDDTSR 68 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V+ L ++ V + P AAR++R A + + + A ++ HT Sbjct: 69 PRAEEVAASGRLLGLSPVEV---LAAPSPRSEGAARDSRRAALLAAGERLGAHAVLLGHT 125 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + LSGM T + I RP LR RR+ R + Sbjct: 126 LDDQAETVLLRLARGSGAR--SLSGMPAT-----DGAIRRPLLRLRRDQTRQACQSLGLE 178 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 + +DP+N D F R R R V + L + + + A A + Sbjct: 179 FWDDPTNADPAFARARTRSTVLPVLEAELGPGIAEALARTADLLRADADALEAQAESVYA 238 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG----YRSMERVMLFLKS--GKRGC 301 + + + + P ++ + L+S +R Sbjct: 239 ELAGSAAGTTAPRAPR--------TPLAAEAEPGPRVEFDVAALAGLTQALRSRVLRRAA 290 Query: 302 VSIGRVVIDRRANFLW----ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 ++ G RA+ +W + R + L + + +GP Sbjct: 291 LAAGSSASALRADHIWAVEDLVTRWRGQKPVPLPSGVLA--------RRTGGRITLVGPD 342 Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 + + D P+G + + P + GG AP S +T Sbjct: 343 APVRPDTPAGA-GHPGRPGVVRTPGERGGPTSRAPASGTLTP 383 >gi|186476145|ref|YP_001857615.1| tRNA(Ile)-lysidine synthetase [Burkholderia phymatum STM815] gi|184192604|gb|ACC70569.1| tRNA(Ile)-lysidine synthetase [Burkholderia phymatum STM815] Length = 472 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 119/344 (34%), Gaps = 25/344 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V +L A + +A SGG DS LL A + R G + A+ V H L Sbjct: 14 LDAVGVAFGALPGAARVAIAFSGGVDSSVLLDA-----AVRVGGAARCLALHVHHGLSPN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + R+ + S+ + AAAR+ARY + + Sbjct: 69 ADAWLAHGEAFARERRVEFASARVDVSRASGASIEAAARDARYRALDALCAQHRVHTLWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DDQ ETV ++ R G+ + + + RP LR R + + R Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYVPPGAAITRVRPLLRLLRGQLERYARAR 187 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNAVAML 237 ++ W +D SN D R+ R +R V L AL + F+D + L Sbjct: 188 DLGWIDDESNADTRYARNALRHDV----LPALAVHFPGFRDALARTAAHAASAQRLLDEL 243 Query: 238 IPKYL-TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 L T A+S+D +L +D LLR ++ + + L+ Sbjct: 244 ARIDLHTARGEEEGALSRDALLALDDERAANLLRYWMRTL--KLPAASTARLMDALRQLR 301 Query: 296 S---GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336 V + ++ P E T Sbjct: 302 EIGGAHTLRVDHAGQALRSYRGQIYWETGDSADPADETALFERT 345 >gi|304391052|ref|ZP_07373004.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325935|gb|EFL93181.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 415 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 138/369 (37%), Gaps = 61/369 (16%) Query: 8 SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P + +A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPHP-WDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTI------N 118 + E + L + + V+ ++ G AR R+ L++ A + Sbjct: 91 SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159 +I+T HT DDQ ETV +R R + + + +T+ + Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRD 210 ++L ++RP L RRE ++ Q + DPSN + R +R V Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSNRMEGPVKTAAGQPLPRAAIREQVMP 270 Query: 211 IDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYL---------TVHMRSIIAI----- 252 AL + + + + ML + + + Sbjct: 271 ALAAALGQDPAPALARLAGQAAADDTILGMLAGEVFWEVLSDEPGDWEPGDSVKLELTVI 330 Query: 253 ----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307 +D++ + +L ++R ++ + G ++ + V+ ++ +G +++ + Sbjct: 331 EGYKYRDLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVDLIRDWHGQGPLTLPGI 390 Query: 308 VIDRRANFL 316 + RR NFL Sbjct: 391 TVTRRGNFL 399 >gi|261839451|gb|ACX99216.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori 52] Length = 338 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + + K + AR+ RY K + ++ AH Sbjct: 56 LEIIQHAQKLAQVHHKKCYI--YYAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L +E +++ R Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKETLKTLAKDR 168 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 169 K--FFEDDSNSSLKFKRNFFRKNYANSLMQH 197 >gi|94264675|ref|ZP_01288457.1| PP-loop [delta proteobacterium MLMS-1] gi|93454906|gb|EAT05150.1| PP-loop [delta proteobacterium MLMS-1] Length = 382 Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 130/370 (35%), Gaps = 52/370 (14%) Query: 3 LSPIES-VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 + P+E VR V R + +LVAVS G DSM LL AL ++ + +A + Sbjct: 1 MHPLEKKVRQAVLGERLITAGERVLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYI 60 Query: 59 DHCLRE-TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEH 113 DH LR + E V+ L I ++ L AARE RY + E Sbjct: 61 DHGLRPAESGREQELVAIAARELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQEL 120 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------------------- 153 A + A + AH DDQ E + +R R A +G+ Sbjct: 121 AGELAANTLAVAHQADDQAEELLLRLLRGTAREGLSGMAWSRLLADAGSGSAGPGIGGGA 180 Query: 154 ----------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 D L + RP L + +I S+L +R I ED SN D Sbjct: 181 DATFSKAEAVGAEPAAPRPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDR 240 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 RF R RVR + + + + L+ + T R + + Sbjct: 241 RFLRNRVRLELLPWLAERFNPNIGQTLRRTATILRDEEELLAQQATAAYRQARQPGDNPV 300 Query: 258 NID----STLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRGCVS--IGRVVID 310 +D S L R ++++ P R +E+++ G ++ V + Sbjct: 301 ALDLAVFSAQPRALRRRLLEKALWELAVKPLTRQIEQLLQGAAKPGDGVIAHLSAGVTVR 360 Query: 311 RRANFLWITR 320 ++ L R Sbjct: 361 KQGQILLFER 370 >gi|266624801|ref|ZP_06117736.1| ExsB family protein [Clostridium hathewayi DSM 13479] gi|288863320|gb|EFC95618.1| ExsB family protein [Clostridium hathewayi DSM 13479] Length = 243 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 14/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL AL + + SAI+VD ++ V ++C Sbjct: 23 GDHIAVGISGGKDSLTLLYALQGLKQFYP-KHFELSAITVDLGF---GDFDLSPVKELCE 78 Query: 79 RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 R + +++VS + K ++ A + R +++ A + I AH +D + Sbjct: 79 RFSVPYTIVSTEIGKILFETRKESNPCALCAKLRKGALNDAAIKLGCNKIAYAHHREDLI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G + T L L + RP + + D+ F + ++ C++P Sbjct: 139 ETMLLSLI----YEGRFYAFSPSTYLDRTGLTVIRPMIYVKEADVIGFKNKYDLPVCKNP 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R V++ + ++ +K + F + Sbjct: 195 CPVDGHTKREYVKKLTKTLEQENPGVKDRLFHAI 228 >gi|298345496|ref|YP_003718183.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063] gi|298235557|gb|ADI66689.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063] Length = 415 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 61/369 (16%) Query: 8 SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR ++SL P + +A+SGG DS+ L AL V S +VDH R Sbjct: 32 AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPHP-WDVSCFTVDHGWRPE 90 Query: 66 AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTI------N 118 + E + L + + V+ ++ G AR R+ L++ A + Sbjct: 91 SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159 +I+T HT DDQ ETV +R R + + + +T+ + Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210 Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRD 210 ++L ++RP L RRE ++ Q + DPSN + R +R V Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSNRMEGPVKTAAGQPLPRAAIREQVMP 270 Query: 211 IDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYL---------TVHMRSIIAI----- 252 AL + + + + ML + + + Sbjct: 271 ALAAALGQDPAPALARLAGQAAADDTILGMLAGEVFWEVLSDEPGDWEPGDSVKLELTVI 330 Query: 253 ----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307 +D++ + +L ++R ++ + G + + V+ ++ +G +++ + Sbjct: 331 EGYKYRDLIRYSAPVLRRVVRRASLLAGARADSLTAAHLRGVVDLIRDWHGQGPLTLPGI 390 Query: 308 VIDRRANFL 316 + RR NFL Sbjct: 391 TVTRRGNFL 399 >gi|217033783|ref|ZP_03439209.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10] gi|216943832|gb|EEC23272.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10] Length = 343 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLRKGKNLLGFSGGLDSTCLFHLLVG-------ENITFDTALVDYNTQKRR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RYA K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMRARKIRYAFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKALAK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|295670353|ref|XP_002795724.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01] gi|226284809|gb|EEH40375.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01] Length = 626 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 77/300 (25%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P+ I +AVSGGSDSM L ++S+R + VDH RE + +E V+ Sbjct: 42 KPSRIALAVSGGSDSMALAFLSKQLISERLIPDLNVKPFIVDHKAREGSTEEAHKVASWL 101 Query: 78 SRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L S+++ + + + +AR+ RY ++ K N + H DD + Sbjct: 102 KDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTV 161 Query: 133 ETV---YMRSQR-----------DYAEKGMGLSGMCDTILY------------------- 159 ETV +R QR + + G+ G+ ++ + Sbjct: 162 ETVLSRLVRGQRQASGFTGVASVGHIPECHGIYGLAESGSFIKLKNVKSRIDPARRRHSV 221 Query: 160 --------------------------------DLNLWISRPFLRCRREDIRSFLLQRNIS 187 D +++ RPF + + S LQ NI Sbjct: 222 HNRERPDESQLKQAWGINPNTPHSNDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIK 281 Query: 188 WCEDPSNTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + D +N D R +R + R + ++ ++ + + ++N + + K Sbjct: 282 FAIDKTNFDPTVTSRNTLRYLLSNDMLPRALRAPSILQLIENSKQVSEELNRQSNIFLRK 341 >gi|261838040|gb|ACX97806.1| hypothetical protein KHP_0599 [Helicobacter pylori 51] Length = 338 Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS+ L L I F VD+ ++ Sbjct: 3 ARDFKTYLEPLREKKNLLGFSGGLDSICLFHLLVE-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 56 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 166 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 167 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 197 >gi|332673472|gb|AEE70289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Helicobacter pylori 83] Length = 343 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 119 HLNDRLEWFLMQLS-----KGSGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|94266523|ref|ZP_01290211.1| PP-loop [delta proteobacterium MLMS-1] gi|93452852|gb|EAT03372.1| PP-loop [delta proteobacterium MLMS-1] Length = 382 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 126/372 (33%), Gaps = 56/372 (15%) Query: 3 LSPIES-VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 + P+E VR V R + +LVAVS G DSM LL AL ++ + +A + Sbjct: 1 MHPLEKKVRQAVLGERLITAGERVLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYI 60 Query: 59 DHCLRE-TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEH 113 DH LR + E V+ L I ++ L AARE RY + E Sbjct: 61 DHGLRPAESGREQELVAIAARELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQEL 120 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------------------- 153 A + A + AH DDQ E + +R R A +G+ Sbjct: 121 AGELAANTLAVAHQADDQAEELLLRLLRGTAREGLSGMAWSRLLADAGSGSAGPGIGGGA 180 Query: 154 ----------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 D L + RP L + +I S+L +R I ED SN D Sbjct: 181 DATFSKAEAVGAEPAAPRPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDR 240 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-------I 250 RF R RVR + + + + L+ + V R + Sbjct: 241 RFLRNRVRLELLPWLAERFNPNIGETLRRTATILRDEEELLAQQAAVAYRQARQPGDNPV 300 Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IGRVV 308 A+ + + L L P R +E+++ G ++ V Sbjct: 301 ALDLAVFSAQPRALRRRLLEKTLWE--LAVKPLTRQIEQLLQGAAKPGGGVIAHLAAGVT 358 Query: 309 IDRRANFLWITR 320 + ++ L R Sbjct: 359 VRKQGQILLFER 370 >gi|219682964|ref|YP_002469347.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis AD011] gi|254789033|sp|B8DWC0|TILS_BIFA0 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|219620614|gb|ACL28771.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis AD011] gi|289178276|gb|ADC85522.1| TilS [Bifidobacterium animalis subsp. lactis BB-12] Length = 382 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 39/288 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS+ L + I+ AI VDH L++ + + + C L Sbjct: 45 VFVACSGGRDSLAL---AACAQVVCAAWGIRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 101 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + G+ AAAREARYA + A+ +AT ++ AHT DDQ E++ + Sbjct: 102 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 161 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R +GM T L+D ++ + RP L R + + +DP+N D Sbjct: 162 RAAGTD--AFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGDAVPL 218 Query: 197 -----DRF-ERVRVRRFVRD----------------------IDLHALYLKMKKFQDLRV 228 + R RVR + D+ AL + ++ V Sbjct: 219 ETALPASYPLRSRVRHDLMPYLSAFAGCDMVDRLARTARIARRDVEALNQEAERALAQTV 278 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + + L L ++ + + + ++ + A CG Sbjct: 279 EFEGNMRDLQADRLADDKLGANIDARALERWPEAIRYRVIARTLAACG 326 >gi|312601162|gb|ADQ90417.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyopneumoniae 168] Length = 276 Score = 139 bits (351), Expect = 7e-31, Method: Composition-based stats. Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 14/178 (7%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M LL + +++ LR A E VS C + + ++S+ + Sbjct: 1 MFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLELKILSFDSF 51 Query: 93 KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 K + L + R RY + K N T ++ H DD LETV+++ ++ G+ Sbjct: 52 KIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKKIVTFWGIHK 111 Query: 153 MCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 + N+ I RPFL R ++ I Q+ I + +D SN +++R ++R + Sbjct: 112 KNNLF----NMEILRPFLYWRTKKQIIRICQQKKIPYLDDQSNFTGKYQRNQIRFLLE 165 >gi|70997431|ref|XP_753463.1| PP-loop family protein [Aspergillus fumigatus Af293] gi|66851099|gb|EAL91425.1| PP-loop family protein [Aspergillus fumigatus Af293] Length = 709 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 79/273 (28%), Gaps = 72/273 (26%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 +AVSGG+DSM L + + +A VDH RE + E R V+ S + Sbjct: 100 LAVSGGTDSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLSDMGKP 159 Query: 84 -------------------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + W + AR R+ + + + ++ Sbjct: 160 DDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLM 219 Query: 125 AHTFDDQLETVYMRS---QRDYAEKGM----------GLSGMCDT------ILYD----- 160 H DD +ET R R G+ GL G+ ++ D Sbjct: 220 GHHQDDNVETTLWRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSMVILRPRDNSAGA 279 Query: 161 ----------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + RP L + + + Q I + DP Sbjct: 280 PCARSGSTTTSQVQGKDEGKQPGFPMATGGILLCRPLLAFPKASLLATCHQHRIPYVSDP 339 Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ 224 +N D R +R V L ++ Sbjct: 340 TNFDPTLTPRNAIRSLVSPTFPPRLPRALQAAS 372 >gi|238924073|ref|YP_002937589.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] gi|238875748|gb|ACR75455.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] Length = 247 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 15/215 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I + VSGG DS+ LL AL + S + AI+VD ++ V +C Sbjct: 24 DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLSPVKALCDE 79 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + VV S + SK Q + + R +++ A ++ I AH DD + Sbjct: 80 LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ +G S T L L I RP + D++ F + N+ C++P Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D R V++ VR ++L +K + F ++ Sbjct: 196 CPYDGHTRREYVKQLVRQLNLEIPGVKKRLFSAIQ 230 >gi|183602055|ref|ZP_02963424.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp. lactis HN019] gi|241190541|ref|YP_002967935.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195947|ref|YP_002969502.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218940|gb|EDT89582.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp. lactis HN019] gi|240248933|gb|ACS45873.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250501|gb|ACS47440.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793528|gb|ADG33063.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp. lactis V9] Length = 376 Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats. Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 39/288 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA SGG DS+ L + I+ AI VDH L++ + + + C L Sbjct: 39 VFVACSGGRDSLAL---AACAQVVCAAWGIRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 95 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + +V + + G+ AAAREARYA + A+ +AT ++ AHT DDQ E++ + Sbjct: 96 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 155 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196 R +GM T L+D ++ + RP L R + + +DP+N D Sbjct: 156 RAAGTD--AFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGDAVPL 212 Query: 197 -----DRF-ERVRVRRFVRD----------------------IDLHALYLKMKKFQDLRV 228 + R RVR + D+ AL + ++ V Sbjct: 213 ETALPASYPLRSRVRHDLMPYLSAFAGCDMVDRLARTARIARRDVEALNQEAERALAQTV 272 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 + + L L ++ + + + ++ + A CG Sbjct: 273 EFEGNMRDLQADRLADDKLGANIDARALERWPEAIRYRVIARTLAACG 320 >gi|167846403|ref|ZP_02471911.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei B7210] Length = 183 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 7/175 (4%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ L + G+ A+AR+ARY + A + A Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 DDQ ETV ++ R G+ ++ RP L R + + Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERY 183 >gi|161527617|ref|YP_001581443.1| PP-loop domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160338918|gb|ABX12005.1| PP-loop domain protein [Nitrosopumilus maritimus SCM1] Length = 304 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 21/251 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VAVSGG DS+ LL +H + S +F + I++D + + + V C L Sbjct: 50 VAVAVSGGKDSLALLKIIHEMASSHNF---RIKTITIDEGIPGYRNEALEIVEKFCGELG 106 Query: 82 IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + H V S+KN +T + R I AK + A +I T H Sbjct: 107 VEHKVYSYKNLFELTLDEALDLRENEKTSSCSICGTLRRRAIDHAAKDVGADVIATGHNL 166 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD L+T + K G + +L +PF +I + +I + Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMEPDTSSNSLRKIKPFCEIYESEIVFYAFTNDIPF 222 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 +P + R +R F+ ++ +K +Q + ++V+N V K TV + Sbjct: 223 QSEPCPHMNEGIRTEIREFLNSLEKQHSGIKNNLYQSI-LRVSNIVKETNYKEKTVCKKC 281 Query: 249 IIAISQDILNI 259 + ++ ++ Sbjct: 282 GSDCTGNVCSV 292 >gi|108773198|ref|YP_635739.1| hypothetical protein RF62 [Chara vulgaris] gi|122243769|sp|Q1ACK8|TILS_CHAVU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|77157854|gb|ABA61895.1| hypothetical protein RF62 [Chara vulgaris] Length = 330 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 111/282 (39%), Gaps = 18/282 (6%) Query: 2 FLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 F++ I+ + + + L+ IL+AVSGG DS+ L+ +L R + + ++ Sbjct: 4 FINLIDRIDHILVERKLLLSKQKILIAVSGGQDSI---FLLNLLLQLRFHWEWEIGIVNC 60 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH + ++ YVS + ++ + + + + AR RY L A + Sbjct: 61 DHMWNQFSQTASLYVSQLACQMNLNYYQCISPSFYRK---EEKARSWRYKLFQRIAYLHD 117 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T+I+TAHT D++ET++ + G+ S +Y + + RP L R ++ Sbjct: 118 YTIIITAHTASDRVETLFYNLFKGSGLHGL-HSLTWKRQIYKKRIHLVRPLLSTTRGELS 176 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVN 231 Q I D +N + + R R+R + +L + + Sbjct: 177 QIFKQIQIPLYLDSTNLNVKIYRNRIRYQLLPYLRLFFNRNLDRSIAQFAEILHSESLFL 236 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSA 272 + ++ + + ++ + + I + +++ Sbjct: 237 ETLTQILRNKIEIINKNQKILDIQFIRVIPFAIQRRIIKQFL 278 >gi|188527428|ref|YP_001910115.1| hypothetical protein HPSH_03220 [Helicobacter pylori Shi470] gi|188143668|gb|ACD48085.1| hypothetical protein HPSH_03220 [Helicobacter pylori Shi470] Length = 343 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 16/209 (7%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LKIIQHAQKLAQTHHKKCYIH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D+LE M+ + + + + I RP L ++ +++ R Sbjct: 119 HLNDRLEWFLMQLSKGAGLNTLLSFQAYEKREF---YAIVRPLLYTPKDTLKTLARDR-- 173 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 174 EFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|154504409|ref|ZP_02041147.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149] gi|153795338|gb|EDN77758.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149] Length = 245 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + HI V +SGG DS+ LL ALH + K + SAI+VD ++ + Sbjct: 18 RMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGF---EDFDLSPI 73 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +C L I + + S + + ++ + + R +++ K + I AH Sbjct: 74 QALCQELNIPYRIESSDIYEILFHVRKESNPCSLCAKMRKGALNQAIKEMGCNKIAYAHH 133 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + +G S T L +L + RP + +D+ F + + Sbjct: 134 KDDIIETMLLSLI----FEGRFYSFSPKTYLDRTDLTVIRPMMFVDEKDVIGFKNKYQLP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R V+ +R ++ ++ + F + Sbjct: 190 VVKSKCPVDGYTKRQYVKELLRQLNHENPGVRERMFHAI 228 >gi|302334896|ref|YP_003800103.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084] gi|301318736|gb|ADK67223.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084] Length = 503 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 137/410 (33%), Gaps = 51/410 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------------KFSAISVDHCLRE-TA 66 A +++ VSGG+D + +L+ S I + + V+H LR A Sbjct: 28 APVVLMVSGGAD-----SSALLLLAATSTLDIDDGRGVARIARERLHVLHVNHQLRGIDA 82 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAK 115 +++ +V ++ SR I +V + + A A L + ++ Sbjct: 83 EEDEEFVRELSSRYGIPCTVRRVDVAALAREGSGSGANVENAGREARYAAAAELAGQLSR 142 Query: 116 TIN----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A I+TAHT DD+ ET +M + R +G+ + + I RP L Sbjct: 143 EFGTPRAAARILTAHTADDRAETFFMNAIRGTGPQGL-------SSIPRRRNLIVRPLLG 195 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL-------HALYLKMKKFQ 224 E++ L I W ED +N D R+ R VR V + L Sbjct: 196 RTHEELCDLLRMSGIVWREDKTNADTRYLRSYVRHEVMPVVRARNPRVTANLATTCDLLS 255 Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284 D + L ++A+ L + + A + + Sbjct: 256 DEDSYLGQVAWRSYRDLLRRQSDGMVALDAGRLGAAEVAIARRVVRQAILAVRPDARLEA 315 Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY---PEETTVWDGR 341 R ++RV+ + +G L++ T+ L+ P + + DGR Sbjct: 316 RHVDRVLGLVAAGGGSASIPLGCDARVEYGLLFVRDHDSGRGTVALWLDVPGQARLPDGR 375 Query: 342 YQFQNLSDSLIQIGPQSYRKA-DVPSGIPPIIAQRALSSMPSKEGGKPLL 390 L++ +A V ++ A + GG+ + Sbjct: 376 GVRARLTEVPTGSRADELARAHAVEWAGESVLLDAASCGLDRASGGRLWV 425 >gi|317177443|dbj|BAJ55232.1| hypothetical protein HPF16_0635 [Helicobacter pylori F16] Length = 343 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIVFDTALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQVHHKKCYIH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ + Sbjct: 119 HLNDRLEWFLMQL-----GKGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKALVK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 ++ + ED SN+ +F+R R+ + + Sbjct: 172 DLKFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|206603982|gb|EDZ40462.1| tRNA(Ile)-lysidine synthetase [Leptospirillum sp. Group II '5-way CG'] Length = 504 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 13/198 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYV 73 + P H A+SGG+DS + L +L + + + +H R +++ ++ Sbjct: 35 NHQSPPHFHAAISGGADS----LFLAFLLHLFLEKRHPLTLLHFNHRTRGMENEEDEIFL 90 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + + P R+ RYA + + ++ H DDQ+E Sbjct: 91 RNFAQHIGRPLRIGVLSEPVPDHLSEDFLRKKRYAFFDTVLRENSNNILFLGHHQDDQVE 150 Query: 134 TVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ M R KG +G+ D ++ RP L R ++IR L +I + D Sbjct: 151 TILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLELRADEIRKILSDYDIPYRMDS 203 Query: 193 SNTDDRFERVRVRRFVRD 210 SN + R RVR + Sbjct: 204 SNLHRDYLRNRVRLELVP 221 >gi|281356157|ref|ZP_06242650.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548] gi|281317526|gb|EFB01547.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548] Length = 813 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 116/324 (35%), Gaps = 14/324 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76 + V SGG+DS L+ + +AI DH LR + E Sbjct: 14 QHGRLFVGFSGGADSTAALLVARRFQE---IFHYRLTAIHFDHGLRGAESAAEAEAAQRF 70 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 I +V S P GL + AR AR + E + + ++ H D+ E + Sbjct: 71 ARNCAIEFRLVRLALS-PGPGLESRARAARLDVWKELVRENPGSAVILGHHAGDRAENLL 129 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-WCEDPSNT 195 +R R GL+ M D N+ RP L R +I FL + IS W D SN Sbjct: 130 LRLARGS--NATGLTSMRSRSEVD-NVIFLRPLLGFARTEIEEFLHENGISEWARDSSNA 186 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 ++RF R +R + L + + V A + + R + + Sbjct: 187 ENRFRRNLLRNRLLPEFYAKLPGSEAGLRH-SLDVLELDAEFLEQEAERRFRELDGSAAF 245 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSI--GRVVIDRR 312 + LL +LR+ G +P + R+ L + K + + + + Sbjct: 246 WRKLHPALLVRVLRLWFRAELGTDLIPPPELVRRLQSELNAPKPEPRLIPVHSGISLRLQ 305 Query: 313 ANFLWITRAVRNLPTLILYPEETT 336 + L I A LP L ++ T Sbjct: 306 GDTLQIA-AAAALPRLTWKFDQET 328 >gi|294155987|ref|YP_003560371.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145] gi|291600488|gb|ADE19984.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145] Length = 289 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 14/190 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 L+A+SGG DSM LL + A V++ RE + + + VSD C + Sbjct: 5 KYLIALSGGPDSMFLL--------NEYSKNNNVVACFVNYNQREDSCVDEQIVSDFCKKN 56 Query: 81 RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 I + K + AR R+ + ++ AH DD LE+ Y++ Sbjct: 57 NIILYKLVLNKIDYQKGNFQDWARTKRFDFFKDIYDKECCDALLIAHHKDDFLESYYLQK 116 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198 G+ T +Y +++ +P L + ++ I F + NI + D SN D+ Sbjct: 117 NSSRLRITYGMK--QKTFIYGMHVE--KPLLFKYFKKQILEFNDKHNIPYAIDKSNFSDK 172 Query: 199 FERVRVRRFV 208 ++R +R + Sbjct: 173 YQRNIIRHKL 182 >gi|317178918|dbj|BAJ56706.1| hypothetical protein HPF30_0609 [Helicobacter pylori F30] Length = 343 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 8 ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ESIAFDTALVDYNTQKQR 60 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K + AR+ RY K + ++ AH Sbjct: 61 LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 119 HLNDRLEWFLMQL-----GKGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202 >gi|25029100|ref|NP_739154.1| hypothetical protein CE2544 [Corynebacterium efficiens YS-314] gi|259505902|ref|ZP_05748804.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium efficiens YS-314] gi|61216660|sp|Q8FMG0|TILS_COREF RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|23494387|dbj|BAC19354.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166506|gb|EEW51060.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium efficiens YS-314] Length = 313 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 27/267 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++R +R+ + H+ + +SGG DS+ L+ A + ++ +AI ++H L+E + Sbjct: 19 TLRVAIRAHLTD-HVHIGLSGGPDSLALVAAARAEGAE-------VTAICINHNLQEGSA 70 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + + S P + A AREARYA ++ I HT Sbjct: 71 EVSERAAAQAEHMGATALIRSITV--PPGSMEAQAREARYAEFAQL-----TDTIWAGHT 123 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET + R + +L + RP L RR D + ++ Sbjct: 124 MDDQAETFLLAGLRGNPAG-------MKSASRRPDLTVIRPLLGVRRADTHGACTELGLT 176 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 +DP N D F RV +R V + + A+ + K Sbjct: 177 PWQDPQNRDRAFRRVAIREQVLPLLAEIHAGDPVPGLALAATRAAMEGEALEFFVDKRRG 236 Query: 244 VHMRSI-IAISQDILNIDSTLLFYLLR 269 + ++ + + +L LR Sbjct: 237 EWADGFPVRLAAEPHALRRLMLADFLR 263 >gi|225567970|ref|ZP_03776995.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM 15053] gi|225163258|gb|EEG75877.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM 15053] Length = 245 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 14/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + K + SA++VD ++ + V +C Sbjct: 23 GDHIAVGISGGKDSLTLLYALHGLRRFYP-NKFELSAVTVDLG---YSECDFTPVIKLCK 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + ++ + + R +++ K + + AH DD + Sbjct: 79 ELGVPYRIVKTDIAHILFEERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + DI F + ++ Sbjct: 139 ETMLLSLL----FEGRFYSFSPRTYLDRMDLTVIRPVMFVDEADIIGFKNKYDLPVVTSR 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R + V+ ++ + + F + Sbjct: 195 CPIDGYTKRQYAKELVKQLNDEHPGARQRMFTAV 228 >gi|255076007|ref|XP_002501678.1| predicted protein [Micromonas sp. RCC299] gi|226516942|gb|ACO62936.1| predicted protein [Micromonas sp. RCC299] Length = 780 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 11/198 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P + +++SGG DSM L L + SFG A+ +D+ R + E +V C Sbjct: 294 RPRSVAISLSGGVDSMVLATILKAAAP--SFGDFDVVAMHIDYANRPESGKEADFVRGWC 351 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 R I V K P+ A +R RY L E AKT + H D E Sbjct: 352 ERKGIVCVVRRIAEVKRGVTPREQYEAESRAIRYGLYKECAKTHGFPAVFVGHHEGDVQE 411 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + R +G++GM + + + + I RP L ++ + F + + D + Sbjct: 412 NIIANIFRGANV--LGMNGMNEEGVVE-GVRIWRPMLPHSKDPVLDFAHTFGVPYFLDTT 468 Query: 194 NTDDRFERVRVRRFVRDI 211 T R ++R + + Sbjct: 469 PTWS--TRGKLRNQLLPL 484 >gi|153814901|ref|ZP_01967569.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756] gi|145847932|gb|EDK24850.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756] Length = 250 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + HI V +SGG DS+ LL ALH + K SA++VD A + + + Sbjct: 26 IQEGDHIAVGISGGKDSLTLLYALHGLKRFYPR-KFDLSAVTVDLGF---ADFNLEPIQN 81 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + +V N + ++ + + R ++E K + + AH D Sbjct: 82 LCRELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 141 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ + +G S T L ++L + RP + ++ F + ++ Sbjct: 142 DIIETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVV 197 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R + +R+++ K + F + Sbjct: 198 KGKCPVDGHTKRQYAKELLRELNKEHPGTKERMFHAI 234 >gi|291536194|emb|CBL09306.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Roseburia intestinalis M50/1] Length = 244 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 14/216 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + +SGG DS+ LL AL + K A++VD ++ VS +C Sbjct: 22 SGDKIAIGISGGKDSLTLLYALSGLRRFYP-QKFDLVAVTVDLG---YENFDLTAVSKLC 77 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + +V+ + + + + + R +++ K + + AH DD Sbjct: 78 HDLDVPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGALNQAIKELGCNKVAYAHHMDDV 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ +G T + D +L I RP + +++ F + + ++ Sbjct: 138 IETAFLSMI----FEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYQLPVVKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P D +R V++ ++ +++ +K K F ++ Sbjct: 194 PCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229 >gi|317500413|ref|ZP_07958637.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331089580|ref|ZP_08338479.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898168|gb|EFV20215.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330404948|gb|EGG84486.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium 3_1_46FAA] Length = 244 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + HI V +SGG DS+ LL ALH + K SA++VD A + + + Sbjct: 20 IQEGDHIAVGISGGKDSLTLLYALHGLKRFYPR-KFDLSAVTVDLGF---ADFNLEPIQN 75 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + +V N + ++ + + R ++E K + + AH D Sbjct: 76 LCRELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ + +G S T L ++L + RP + ++ F + ++ Sbjct: 136 DIIETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVV 191 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R + +R+++ K + F + Sbjct: 192 KGKCPVDGHTKRQYAKELLRELNKEHPGTKERMFHAI 228 >gi|254284141|ref|ZP_04959109.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B] gi|219680344|gb|EED36693.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B] Length = 358 Score = 137 bits (346), Expect = 3e-30, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 8/231 (3%) Query: 92 SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 + + AREARY + + AH DDQ+ETV R R +G L Sbjct: 4 GDESSAIEVRAREARYRAFDDAV--GQGEALFQAHHLDDQVETVLYRLLRGSGPRG--LR 59 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 G+ + RP L R ++ +F +S+ +DPSN D RF+R +R V + Sbjct: 60 GIPAERSLTRG-KVVRPLLDIGRLELLNFCRDARLSFVQDPSNDDFRFDRNYLRHAVLPV 118 Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 N V L + L + + + DS R+ Sbjct: 119 IEQRWPGYRATLSRAAATQNLMVTWLEEEGLHIEVGLMGDPGISFDRTDSDPQRLATRLH 178 Query: 272 AAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 + +S+P R + R +F ++ ++ +++G V++ ++ Sbjct: 179 HWLATEGLSVPDQRRLVEFARQAMFARADRQPRLALGPTVLESWRGVIYWH 229 >gi|323702949|ref|ZP_08114606.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532080|gb|EGB21962.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574] Length = 252 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 86/233 (36%), Gaps = 15/233 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVD 59 +FL+ + + + ++V VSGG DS LL L+ + A+ +D Sbjct: 8 LFLTQVTRAISHFKMIEPGDKVVVGVSGGKDSSTLLFFLNMYRHRYLKKIPFELHAVHLD 67 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113 L ++ + + C RL I ++ + + +T A R + Sbjct: 68 MGL----GADLAPLKEFCHRLNIPLTIKKTDIGTILFDIRKETNPCALCANLRRGALHNT 123 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + + AH DD +ET +M + K + T L +L + RPF+ Sbjct: 124 TLELGFNKVALAHHLDDVMETFFMSLIFNGNMK----TFAPKTYLDRTDLTVIRPFIYVT 179 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + + + NI +P + + +R ++ V ++ ++ K L Sbjct: 180 EDQVLELVDLENIPVVHNPCPANKKTKREEIKHLVDNLAQTYPDIRQKFLTSL 232 >gi|293191233|ref|ZP_06609166.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309] gi|292820654|gb|EFF79623.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309] Length = 215 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 7/192 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ S+ F+ + P ++V +SGG+DS+ L + V + I ++VDH L Sbjct: 22 LAVRASLTSFIDKVGAPPALVVGLSGGADSLALALTTIDVAAR---AGIPVVTVTVDHGL 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + +E R V+D L V + P G +AR+AR A + A+ A I Sbjct: 79 RAGSGEEARCVADRAESLGARAVVETVSVEGPG-GPEGSARDARRAALRAVAQREGAP-I 136 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV +R R L + D + RP L RR D Sbjct: 137 LLGHTMDDQAETVLLRLARGSGP--SSLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACA 194 Query: 183 QRNISWCEDPSN 194 Q ++ +DP+N Sbjct: 195 QAGLTPIQDPTN 206 >gi|33596889|ref|NP_884532.1| hypothetical protein BPP2286 [Bordetella parapertussis 12822] gi|61216608|sp|Q7W859|TILS_BORPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33573590|emb|CAE37584.1| conserved hypothetical protein [Bordetella parapertussis] Length = 344 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 110/332 (33%), Gaps = 35/332 (10%) Query: 9 VRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 V +R+L PA + VAVSGG+DS L + V H L+ A Sbjct: 24 VAAALRALDPAPARLAVAVSGGADS----AMLAVAAAAVLPPGCTLRLFHVHHGLQAAAD 79 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126 V + + L + Q G+ AAAR ARY ++ A+ I+ AH Sbjct: 80 QWAAQVRGLGALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAH 139 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----L 182 +DQ ETV +R R +GM + + RP+L R I + Sbjct: 140 HRNDQAETVLLRLLRGTGLQGMAAM---APLSERDGVAYLRPWLDVDRAAILALAGAVRA 196 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 Q +DP+NTD R+ R VR + AL + +Q + + +A Sbjct: 197 QCGWQAVQDPTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVA 252 Query: 243 TVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 V + + + LR A +P + + Sbjct: 253 EVARADFDTLEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQR 310 Query: 293 FLKS------GKRGCVSIGRVVIDRRANFLWI 318 L+ + V+ +WI Sbjct: 311 QLRQLHALGHDRHLRWQHAGRVVRCERGRVWI 342 >gi|33600723|ref|NP_888283.1| hypothetical protein BB1738 [Bordetella bronchiseptica RB50] gi|61216609|sp|Q7WLK7|TILS_BORBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33568323|emb|CAE32235.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 344 Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 110/332 (33%), Gaps = 35/332 (10%) Query: 9 VRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 V +R+L PA + VAVSGG+DS L + V H L+ A Sbjct: 24 VAAALRALDPAPARLAVAVSGGADS----AMLAVAAAAALPPGCTLRLFHVHHGLQAAAD 79 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126 V + + L + Q G+ AAAR ARY ++ A+ I+ AH Sbjct: 80 QWAAQVRGLGALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAH 139 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----L 182 +DQ ETV +R R +GM + + RP+L R I + Sbjct: 140 HRNDQAETVLLRLLRGTGLQGMAAM---APLSERDGVAYLRPWLDVDRAAILALAGAVRA 196 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 Q +DP+NTD R+ R VR + AL + +Q + + +A Sbjct: 197 QCGWQAVQDPTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVA 252 Query: 243 TVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292 V + + + LR A +P + + Sbjct: 253 EVARADFDTLEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQR 310 Query: 293 FLKS------GKRGCVSIGRVVIDRRANFLWI 318 L+ + V+ +WI Sbjct: 311 QLRQLHALGHDRHLRWQHAGRVVRCERGRVWI 342 >gi|306823453|ref|ZP_07456828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Bifidobacterium dentium ATCC 27679] gi|309802756|ref|ZP_07696860.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022] gi|304553160|gb|EFM41072.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Bifidobacterium dentium ATCC 27679] gi|308220820|gb|EFO77128.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022] Length = 366 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 33/295 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + + GL AAAREARYA I E +A ++ AHT +DQ ETV + Sbjct: 102 LDPVRVRAIEVHGNEQGLEAAAREARYAAIVEECS--DAAAVLLAHTKNDQAETVLIGLL 159 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199 R ++GM + D + RP+L RE+ + W +DP+N D Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216 Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 R RVR + + L + Q R +N Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNRRAQE 276 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + +T + + + + ++ + G S R ++R++ Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331 >gi|283455476|ref|YP_003360040.1| lysidine synthetase [Bifidobacterium dentium Bd1] gi|283102110|gb|ADB09216.1| Putative lysidine synthetase [Bifidobacterium dentium Bd1] Length = 366 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 113/295 (38%), Gaps = 33/295 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + GL AAAREARYA I E +A ++ AHT +DQ ETV + Sbjct: 102 LDPVRVRAIEVHGNGQGLEAAAREARYAAIVEECS--DAAAVLLAHTKNDQAETVLIGLL 159 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199 R ++GM + D + RP+L RE+ + W +DP+N D Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216 Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 R RVR + + L + Q R +N Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNKRAQE 276 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + +T + + + + ++ + G S R ++R++ Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331 >gi|22711981|ref|NP_683805.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum] gi|61216673|sp|Q8M9Y1|TILS_CHAGL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|22416985|gb|AAM96585.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum] Length = 341 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 40/224 (17%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L+ P IL+A+SGG DS+ LL L + K K S I DH +K++ ++ Sbjct: 20 NLLKPKKSILIAISGGQDSIVLLKILSILQIQ---WKWKLSIIYCDHQWNIYSKNQAFHL 76 Query: 74 SDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V ++ I V+ K + + AR RY++ A +I+TAH+ D++ Sbjct: 77 YKVSFQMGIPFYHGVTIKPLRTEKS----ARIWRYSVFQRIASISKFNVIVTAHSSTDRV 132 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYD-------------------------------L 161 ET R +G+ I ++ Sbjct: 133 ETFLYNLFRGTGVQGLQSLTWKKNIQFEILPNFARSKKSFDLKILSLESKNGIQTYSDYN 192 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L + RP L R ++ F N+ D +N + R R+R Sbjct: 193 KLQLIRPLLNITRTELGKFCSNENLPLWPDLTNYNLSIIRNRIR 236 >gi|291522347|emb|CBK80640.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Coprococcus catus GD/7] Length = 248 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 14/219 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + I + VSGG DS+ +L AL + + AI+V L + V Sbjct: 18 QMIDEGDKIAIGVSGGKDSLTMLYALKGLQRFYP-KHFELEAITVGLGL-GNFNMDA--V 73 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +C+ L I +++VS + + + + + + R ++ A + I H Sbjct: 74 KSLCNELNIPYTIVSTEIGPIIFDQRHEKNPCSLCAKMRKGALNNKALELGCNKIAYGHH 133 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ M +G + T L L + RP L DI F ++N+ Sbjct: 134 RDDLVETMLMSLI----YEGHFYAFPPVTKLERTGLTVIRPLLYMTEPDIIGFARKQNLP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + P + R + + I+ K F + Sbjct: 190 VAKSPCPANGHTRREYTKNLMHQINRENPGAIDKMFTAI 228 >gi|302870332|ref|YP_003838969.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC 27029] gi|302573191|gb|ADL49393.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC 27029] Length = 316 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 115/317 (36%), Gaps = 14/317 (4%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L +LVA SGG+ L + + ++VDH L+ + Sbjct: 4 AVRRVLTGLPGGGPVLVACSGGA---DSLALAAATAFVAPRLGRQAGLVTVDHGLQAGSA 60 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + V+D + V+ + G AAAREARY + A +A ++ H Sbjct: 61 ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAAAHRFDAVGVLLGH 120 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T D+Q ETV + R +G LSGM + D + + RP L R + R+ + Sbjct: 121 TRDEQAETVLLALARGAGPRG--LSGMPERRDVD-GVPLLRPLLDVPRANTRAACEALGL 177 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKY 241 DP N D + R RVR V + AL + L A+ Sbjct: 178 DPWADPHNADPAYARARVRSDVLPGLVDALGPGVVANLARTAGLLAADNAALDALADAAL 237 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299 R + + + + +L A G + +R + + + + G+ Sbjct: 238 ADARTREGGLSVAGLAELPAAVRTRVLHTWARELGAAPAALSHRHVAALDALVTAWRGQG 297 Query: 300 GCVSIGRVVIDRRANFL 316 G + R A L Sbjct: 298 PVHLPGNHQVRRHAGHL 314 >gi|298736428|ref|YP_003728954.1| cell cycle protein MesJ [Helicobacter pylori B8] gi|298355618|emb|CBI66490.1| cell cycle protein MesJ [Helicobacter pylori B8] Length = 338 Score = 136 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 20/203 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS+ L L I F VD+ ++ Sbjct: 2 TARDFKNYLEPLREGKNLLGFSGGLDSVCLFHLLVG-------ENIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQTLAKTHHKKCHIH--YAPKIARNFEMQARKIRYDFFEALTKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLGFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167 Query: 184 RNISWCEDPSNTDDRFERVRVRR 206 + ED SN+ +F+R R+ Sbjct: 168 HK--FFEDDSNSSLKFKRNFFRK 188 >gi|167648379|ref|YP_001686042.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31] gi|167350809|gb|ABZ73544.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31] Length = 455 Score = 136 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 132/389 (33%), Gaps = 52/389 (13%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V SGG DS+ LLI + +VDH L + L Sbjct: 24 VGFSGGGDSLALLILARDWARAHGRAVLSL---TVDHQLNPDSAAWTAAAVARAQALGAQ 80 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 ++W KP GL AAAR AR+AL+++ A+ A +++ HT DD E MR++ Sbjct: 81 ARALAWTGDKPSIGLPAAARAARHALLADAAREAGARVLLLGHTADDIAEAAAMRAEGST 140 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 S +++ RP L R +IR +L R +W +DP+N D + R R Sbjct: 141 VSDPRDWSP-SPAWPEGRGVFVLRPLLEVGRGEIREWLSARGETWLDDPANDDLNYARAR 199 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263 R+ + + +D + ++ + + L + T Sbjct: 200 ARQSLSSR-------TSAQREDPGPTRSAVLSTVPDLRFATSGMTSEETGAGYLVLPRTA 252 Query: 264 LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA-- 321 + + G + P + R++ +++G+ ++ I+ + R Sbjct: 253 PAARVAAACLCAAGTSTPPRGERLRRLVDRIRAGEDFTATLAGARIEAAGEAVSFFREPG 312 Query: 322 --VRNLPTLI------------------------------------LYPEETTVWDGRYQ 343 R+ P + L + VWDGRY+ Sbjct: 313 EARRSKPPPVGEVSAQPTEGGVVERPTPPPTGPSGRLPHGGRGYLALPVGQPIVWDGRYE 372 Query: 344 FQNLSDSLIQIGPQSYRKADVPSGIPPII 372 + L + P A +P + Sbjct: 373 ITAAAPGLT-VRPLQGLAARLPPAQRQAL 400 >gi|308184511|ref|YP_003928644.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SJM180] gi|308060431|gb|ADO02327.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SJM180] Length = 338 Score = 136 bits (344), Expect = 5e-30, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 16/209 (7%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQTLAKTHHKKCYIH--YAPKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D+LE M+ + + LS + I RP L ++ +++ + Sbjct: 113 HHLNDRLEWFLMQLSKGSGLNTL-LSFQA--YEKRESYAIVRPLLYTPKDTLKTLAK--D 167 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + + ED SN+ +F+R R+ + + Sbjct: 168 LKFFEDDSNSSLKFKRNCFRKHYANALMQ 196 >gi|317010948|gb|ADU84695.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SouthAfrica7] Length = 338 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 20/202 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 V+ F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 VQDFKTYLEPLREGQNLLGFSGGVDSTCLFHLLVQ-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K AR+ RY K + ++ AH Sbjct: 56 LEIIKHAQKLAQTHHKKCYIH--YAQKITHDFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEQRGFYAIVRPLLYTPKDTLKTLFKDM 168 Query: 185 NISWCEDPSNTDDRFERVRVRR 206 + ED SN +F+R R+ Sbjct: 169 K--FFEDDSNASLKFKRNFFRK 188 >gi|210134929|ref|YP_002301368.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori P12] gi|210132897|gb|ACJ07888.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori P12] Length = 338 Score = 136 bits (343), Expect = 6e-30, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 18/201 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+ SGG DS L L I F VD+ ++ + +++ + Sbjct: 13 LREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTL 65 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + K AR+ RY K ++ AH +D+LE Sbjct: 66 AKTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLIKEHPYKHLILAHHLNDRLEWFL 123 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ KG GL+ + Y+ + I RP L ++ +++ N+ + ED SN Sbjct: 124 MQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK--NLKFFEDDSN 176 Query: 195 TDDRFERVRVRRFVRDIDLHA 215 + +F+R R+ + + Sbjct: 177 SSLKFKRNCFRKHYANALMQH 197 >gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] gi|296179979|gb|ADG96885.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985] Length = 330 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 99/269 (36%), Gaps = 22/269 (8%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 + A + VA+SGG+DS+ L AL A+ VDH L+ + Sbjct: 27 LAQHAPAQARVCVALSGGADSLALTAALAR-------EHTAVEALVVDHGLQPESAQTAA 79 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + L + S V GL AAAR A + + + ++ HT DDQ Sbjct: 80 RAAQLALDLGCSGSRVLPVTVNGAGGLEAAARTA---RQAALRQAGAGSPVLLGHTLDDQ 136 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ETV + R + + +D RP L RR R+ + + ED Sbjct: 137 AETVLLGLARGSGPRS-----IQGMRAWDD--PWGRPLLGVRRAMTRAVCAELGVQPHED 189 Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P NTD RF R R+R V + L + + D N + Sbjct: 190 PMNTDPRFVRARLRAEVLPLLEDVLQGGVAEALARTADAVRADNGHLDEEAAAVYAKIGG 249 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICG 276 + IA++ D+ + + +LR+ G Sbjct: 250 AKIAVT-DVAGLPGPIRRRVLRLWLMGNG 277 >gi|317009260|gb|ADU79840.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori India7] Length = 338 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 20/212 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQTLAKTHHKKCYIH--YAQKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ + I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGSGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAKD 167 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 168 QK--FFEDSSNSSLQFKRNVFRKHYANSLMQH 197 >gi|225572140|ref|ZP_03781004.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM 10507] gi|225040406|gb|EEG50652.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM 10507] Length = 244 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 14/215 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V +SGG DS+ LL AL + + AI+VD + D + +C Sbjct: 22 KGDKIAVGISGGKDSLTLLYALAGLRRFYP-NPFELEAITVDMGFGDFHTD---KIQQLC 77 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + ++VV + + ++ + + R ++E AK +N I AH DD Sbjct: 78 DKLEVPYTVVPTEISKIIFQDRKESNPCSLCAKMRKGALNEVAKKLNCNKIAYAHHKDDV 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ + +G + T ++L + RP L DI F + ++ + Sbjct: 138 VETMLLSLI----FEGRFHTFSPMTYWDRMDLTLIRPLLYVDEADIIGFKNKYDLPVEKS 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R + +R ++L +K + F + Sbjct: 194 ACPADGNTKREYAKDLLRTLNLENPGVKQRMFTAI 228 >gi|171741155|ref|ZP_02916962.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC 27678] gi|171276769|gb|EDT44430.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC 27678] Length = 366 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 33/295 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I+VA SGG DSM L +V + ++ AI +DH L+ + + + C L Sbjct: 45 IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + GL AAAREARYA I E +A +++AHT +DQ ETV + Sbjct: 102 LDPVRVRAIEVHGNGQGLEAAAREARYAAIVEECS--DAAAVLSAHTKNDQAETVLIGLL 159 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199 R ++GM + D + RP+L RE+ + W +DP+N D Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216 Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 R RVR + + L + Q R +N Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNKRAQE 276 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291 + + +T + + + + ++ + G S R ++R++ Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331 >gi|325661579|ref|ZP_08150203.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472106|gb|EGC75320.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium 4_1_37FAA] Length = 244 Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + HI V +SGG DS+ LL ALH + K + SAI+VD E ++ Sbjct: 18 QMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGY------EEFHL 70 Query: 74 S---DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +C++L + + +V + ++ + + R +++ K + + Sbjct: 71 EPIEKLCAQLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAY 130 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DD +ET+ + +G S T L ++L + RP + D+ F + Sbjct: 131 AHHKDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKY 186 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ++ + D +R + VR ++ K + F + Sbjct: 187 DLPVVKSKCPVDGHTKRQYAKELVRQLNQEHPGAKERMFTAI 228 >gi|314982853|gb|EFT26945.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA3] gi|315091171|gb|EFT63147.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA4] Length = 311 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ +R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDAHDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + +N + + V A + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|240146321|ref|ZP_04744922.1| PP-loop family protein [Roseburia intestinalis L1-82] gi|257201562|gb|EEU99846.1| PP-loop family protein [Roseburia intestinalis L1-82] Length = 244 Score = 136 bits (342), Expect = 9e-30, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 14/216 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + +SGG DS+ LL AL + K A++VD ++ VS +C Sbjct: 22 SGDKIAIGISGGKDSLTLLYALSGLRRFYP-QKFDLVAVTVDLG---YENFDLTAVSKLC 77 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + +V+ + + + + + R +++ K + + AH DD Sbjct: 78 HDLDVPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGALNQAIKELGCNKVAYAHHMDDV 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ +G T + D +L I RP + +++ F + + ++ Sbjct: 138 IETAFLSMI----FEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYPLPVVKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P D +R V++ ++ +++ +K K F ++ Sbjct: 194 PCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229 >gi|238061469|ref|ZP_04606178.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149] gi|237883280|gb|EEP72108.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149] Length = 336 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 7/183 (3%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA SGG+DS+ L A V ++VDH L+ + V+ + A Sbjct: 2 VACSGGADSLALAAAAAFVAPRLGRP---VGLVTVDHALQAGSDRRAADVAAWAAGAGFA 58 Query: 84 HSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + V + S G AAAREARY + E A+ A ++T HT DDQ ETV + R Sbjct: 59 PAEAVRVEVSGRPGGPEAAAREARYQALVEAARRHGAAALLTGHTRDDQAETVLLALARG 118 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 +G+ + + + RP L RE+ R ++ EDP N D + R Sbjct: 119 AGPRGLAGMPPRRDLC---GVPLLRPLLDVSREETRKACAALGLTPWEDPHNADASYARA 175 Query: 203 RVR 205 RVR Sbjct: 176 RVR 178 >gi|109947271|ref|YP_664499.1| hypothetical protein Hac_0697 [Helicobacter acinonychis str. Sheeba] gi|109714492|emb|CAJ99500.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 349 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 18/196 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+ SGG DS L L I F VD+ ++ + +++ + Sbjct: 24 LREGKNLLGFSGGVDSTCLFHLLVK-------ENIAFDIALVDYNTQKQRLEIIKHAQKL 76 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + K AR+ RY + + ++ AH +D+LE Sbjct: 77 AKTHHKKCYIH--YAQKITHDFEMQARKIRYDFFETLIREHSYKHLILAHHLNDRLEWFL 134 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ KG GL+ + Y+ + I RP L ++ +++ + ED SN Sbjct: 135 MQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTSKDILKTLAKDMK--FFEDFSN 187 Query: 195 TDDRFERVRVRRFVRD 210 +F+R R+ + Sbjct: 188 YSLKFKRNFFRKHYAN 203 >gi|331084861|ref|ZP_08333949.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410955|gb|EGG90377.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 244 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + HI V +SGG DS+ LL ALH + K + SAI+VD E ++ Sbjct: 18 QMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGY------EEFHL 70 Query: 74 S---DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +C++L + + +V + ++ + + R +++ K + + Sbjct: 71 EPIEKLCAQLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAY 130 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DD +ET+ + +G S T L ++L + RP + D+ F + Sbjct: 131 AHHKDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKY 186 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ++ + D +R + VR ++ K + F + Sbjct: 187 DLPVVKSKCPVDGHTKRQYAKELVRQLNQEHTGAKERMFTAI 228 >gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] gi|255918768|gb|ACU34279.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827] Length = 308 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 23/232 (9%) Query: 5 PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 P+ VR VR + PA + VAVSGG+DS ++ + + A+ VDH Sbjct: 8 PLSRVRTAVRRFLAEHRPARVAVAVSGGADS-------LALAACTAALTSGARAVVVDHG 60 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L+E + + + C+ L + V + + AA A L Sbjct: 61 LQEGSAEVAERAARTCAELGLDAQVRRVEVTGGGGPEAAA------RRARYAALRPERGL 114 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R + + +L+ RP L R D Sbjct: 115 VLLGHTLDDQAETVLLGLGRGSGPRSIAGM-------RELDAPWGRPLLGVSRADTEGAC 167 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 + +S DP N D F RVR+RR V + L + + Sbjct: 168 AELGLSPWSDPHNADPAFTRVRLRREVLPLLEEVLQGGVARALARTAAQLRE 219 >gi|167758161|ref|ZP_02430288.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704] gi|167664058|gb|EDS08188.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704] Length = 263 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 14/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 HI V +SGG DS+ LL ALH + K + SA++VD ++ + V +C Sbjct: 42 GDHIAVGISGGKDSLTLLYALHGLRRFYP-KKFELSAVTVDLG---YSECDFTPVVYLCE 97 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + + ++ + + R +++ K + + AH DD + Sbjct: 98 ELGVPYKIVKTDIAHILFDERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 157 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G S T L ++L + RP + ++ F + ++ Sbjct: 158 ETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPIMFVDEAEVIGFKQKYDLPVVTSR 213 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R + V+ +D + + F + Sbjct: 214 CPIDGYTKRQYAKELVKQLDDEHAGARQRMFTAI 247 >gi|225419721|ref|ZP_03762024.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme DSM 15981] gi|225041631|gb|EEG51877.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme DSM 15981] Length = 240 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 14/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 + + +SGG DS+ LL AL + + AI+VD L E+ + +C Sbjct: 23 GDRVALGMSGGKDSLTLLYALSHLQKFYP-KRFDLCAITVDLGL---GNLELDPIRALCE 78 Query: 79 RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + VV + K ++ + + R ++ A + AH DD + Sbjct: 79 EFAVPYEVVPTQIGKVLFETRKESNPCSLCAKMRKGALNNKALEFGCNKVAYAHHRDDLI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M +G + T L L + RP L ++ F + ++ C++P Sbjct: 139 ETALMSLI----YEGHFYAFSPRTKLDRTGLTVIRPLLYASEAEVVGFKNKYHLPVCKNP 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R V+ +RD+ +K F + Sbjct: 195 CPMDGHTKREYVKNLIRDLQRDNPTVKDCLFHAV 228 >gi|269836806|ref|YP_003319034.1| tRNA(Ile)-lysidine synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786069|gb|ACZ38212.1| tRNA(Ile)-lysidine synthetase [Sphaerobacter thermophilus DSM 20745] Length = 468 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 112/306 (36%), Gaps = 21/306 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L +L+ SGG+DS+ L +L ++ + + A+ V+H LR A + Sbjct: 22 LGPDDCVLIGFSGGADSLALTASLQAIHAAGRGPRP--LALHVNHRLRPEADADAERAVA 79 Query: 76 VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +VV + G +AAR ARYA ++ A+ + AHT +DQ Sbjct: 80 LGEAMGVPVTVVPVDVGAWDRVLREGTESAARAARYAALASAAREWGVRWVAVAHTANDQ 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQ 183 ETV +R R G+ L+ LW+ RP L R + ++ Sbjct: 140 AETVLLRLARGAGLDGLAGMREQSHRPVPLDPDESEVVPLWLLRPLLGLTRAQVERYVRA 199 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAM 236 R + ED SN + R VR V + + D + A Sbjct: 200 RGLVPIEDASNVSPVYRRNLVRHSVLPELERVAPGVIETIARTATLLADDAAYLQAAAEA 259 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + R + + + N+ L +L ++A G + P +E + Sbjct: 260 AGADIVGRAGRLVTVAREPLRNLHPALQRRVLILAAREAGVDPAGPTAERVEALRRAAVE 319 Query: 297 GKRGCV 302 G G V Sbjct: 320 GAVGRV 325 >gi|182437879|ref|YP_001825598.1| hypothetical protein SGR_4086 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778515|ref|ZP_08237780.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1] gi|178466395|dbj|BAG20915.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658848|gb|EGE43694.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1] Length = 370 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 121/305 (39%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ I+VDH L+ + V + + Sbjct: 71 VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 127 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 128 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 187 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ +R L +++ +DP N D + R Sbjct: 188 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQAVRKACLVQSLPVWDDPHNIDPAYTR 243 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDIL 257 R+R AL + + +++ A + + S+ + L Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELSVRDETGRLECAKL 303 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + + A I G + + + L +G RG +I GRV R+ Sbjct: 304 YVLPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEAMRQGG 363 Query: 315 FLWIT 319 L I Sbjct: 364 RLVIR 368 >gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897954|gb|EFG77535.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 320 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 114/327 (34%), Gaps = 33/327 (10%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +V F ++ A VA+SGG DS+ L + +A+ VDH L+ Sbjct: 12 AAVEEFAKTHAATAEQWCVALSGGPDSLALTAVAAQLRPT--------TAVIVDHGLQPG 63 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + D +A V+ + + G A + ++ Sbjct: 64 SGDVAETARAQA----VAVGCVAAQVVRVHVGNEGGPEAAARTARYAALSAYHGGPVLLG 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + + YD RP L RR + + Sbjct: 120 HTLDDQAETVLLGLGRGSGVRS-----IAGMRPYDP--PWGRPLLGVRRALTHAACAELG 172 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKY 241 ++ +DP NTD RF R R+R+ V + L + + + + L + Sbjct: 173 LTAWQDPHNTDRRFTRTRLRQEVLPLLEEVLGGGVAEALARTATALREDTELIDTLAARA 232 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRG 300 L +Q + + + ++R + G + + + V + + +G Sbjct: 233 LPEAKAGAGLHTQALAALPGPVRRRVIR--GWLLAGGATGLTDKQIRGVDALVTAWRGQG 290 Query: 301 CVSIG------RVVIDRRANFLWITRA 321 V++G R++ RR L + R Sbjct: 291 GVAVGSALRDERLIAGRRDGVLTLWRE 317 >gi|314965441|gb|EFT09540.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA2] gi|315104911|gb|EFT76887.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA2] gi|327329235|gb|EGE70995.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL103PA1] Length = 311 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ +R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMEEVLGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + +N + + V A + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|282853313|ref|ZP_06262650.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139] gi|282582766|gb|EFB88146.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139] Length = 317 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 17 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 70 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ +R + V G AAAR AR A + + A Sbjct: 71 QQGSDEVAERTRDLLARRGMDACVRRVDVDAHDPDGPEAAARTARRAALLDVA---GDEP 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 128 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 181 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 234 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + +N + + V A + + ++ V+ L Sbjct: 235 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 294 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 295 AGVDVPGGRVEMRQGTLYLARR 316 >gi|16127457|ref|NP_422021.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15] gi|221236270|ref|YP_002518707.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus NA1000] gi|61216723|sp|Q9A3H7|TILS_CAUCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|13424911|gb|AAK25189.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15] gi|220965443|gb|ACL96799.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus NA1000] Length = 408 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 89/402 (22%), Positives = 147/402 (36%), Gaps = 42/402 (10%) Query: 6 IESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ VR + + PA + V SGG DS L L +VL A+ VDH L Sbjct: 3 LDQVRAALDRRLDPASRAPLAVGFSGGGDS---LFLLKTVLDWARPLDRPVLALVVDHQL 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + L A ++W + KP+TGL AAAR AR+AL++ A+ A ++ Sbjct: 60 QPQSTAWTAEAVAKARALGAAALGLTWTDQKPRTGLPAAARRARHALLATAAREAGARVL 119 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT D E V MR++ + L++ RP L R +IR L Sbjct: 120 ILGHTASDLAEGVAMRAE-GSSVSNPRAWAPSPVWPEGRGLFVLRPLLTLTRAEIRDALT 178 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + +W +DP+N D ++ R + A+ L+P Sbjct: 179 REGETWLDDPANLDL------------------------RYARARARAAGALTPLLPVRE 214 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 + + + ++ L + G P + R++ L+SG R Sbjct: 215 SPPPGVFEIDPAGAIRLPRDVVPAHLAAALLCASGAERPPRGDRLARLVERLRSGARFTA 274 Query: 303 SIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357 ++ I+ L I R A L L L P VWDGR++ +L + + Sbjct: 275 TLAGARIEADQAVL-ICRDAGEAARGGLARLDLAPGACGVWDGRWEVVAGKTALAVVALR 333 Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 + +P R + P+ P+L Sbjct: 334 GRTSS-----LPAEQRARLSAIAPAVRPSLPVLLSLDGDAPG 370 >gi|315094257|gb|EFT66233.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL060PA1] Length = 311 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ +R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMGEVLGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + +N + + V A + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|15645348|ref|NP_207522.1| hypothetical protein HP0728 [Helicobacter pylori 26695] gi|61216365|sp|O25428|TILS_HELPY RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2313855|gb|AAD07779.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 336 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 18/192 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+ SGG DS L L I F VD+ ++ + +++ + Sbjct: 11 LKEGKNLLGFSGGLDSTCLFFLLVG-------ENIVFDIALVDYNTQKQRLEIIQHAQKL 63 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + K AR+ RY K + ++ AH +D+LE Sbjct: 64 AKTHHKKCYIHH--APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 121 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M+ KG GL+ + Y+ I RP L ++ +++ ++ + ED SN Sbjct: 122 MQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSN 174 Query: 195 TDDRFERVRVRR 206 + +F+R R+ Sbjct: 175 SSLKFKRNCFRK 186 >gi|88854794|ref|ZP_01129460.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1] gi|88815955|gb|EAR25811.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1] Length = 340 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 119/323 (36%), Gaps = 21/323 (6%) Query: 8 SVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +VR + +L + +LVA+SGG DS L + + S ++ A+ V+H L+ Sbjct: 19 AVRTALAALPSSSGPEPLVLVALSGGPDS---LALAAATAFEASKAGMRAGAVIVNHNLQ 75 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + D + L + + G +AAR+ARYA ++E A A ++ Sbjct: 76 DGSADVAAAAARQARDLGLDPVDIRSILVGDAGGPESAARDARYAALAEAAAEYGAIRVL 135 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 HT DDQ ETV + R L GM RP L RE Sbjct: 136 LGHTLDDQAETVLLGLARGSGAG--SLKGMAV-----DTGEYLRPLLAVARETTVQCCED 188 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I DP N D + RVRVR+ V + L ++ A + + Sbjct: 189 SGIVAWNDPHNLDTSYTRVRVRQTVLPLLESELGPGIRDALVRTADQAREDAEALDHFAE 248 Query: 244 VHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + IS+ L + L L A +SL ++E L Sbjct: 249 EMAEDLAEISEAGISLPVRALAANPAALRQRLIRLAVASEFHVSLSRTHTLEIARLVTDW 308 Query: 297 GKRGCVSIGRVVIDRRANFLWIT 319 +G + + V + RR N L + Sbjct: 309 RGQGPIDVPGVRVVRRENLLHFS 331 >gi|155370502|ref|YP_001426036.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella virus FR483] gi|155123822|gb|ABT15689.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella virus FR483] Length = 513 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 100/270 (37%), Gaps = 30/270 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P +++++SGGSDSM +H + + + V++ R++A E +V+D Sbjct: 206 QRPTKLIMSISGGSDSMVAFHIIHGL---KEAFGYDIDVVMVNYTNRDSAYAEEAFVADW 262 Query: 77 CSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTINATLIMTAHTF 128 + V K + R+ RYA KT+ ++ H Sbjct: 263 VNSFGYPLHVRRIDEIKRKQCANNQLRTVYEKYTRDVRYA----TYKTLGPHPVVMGHNK 318 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LE + +K LSGM DT++ + RP L + DI ++ + I + Sbjct: 319 DDCLENILQNI--GSCQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPF 375 Query: 189 CEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +R ++R V + + L+ K D+ V +V M + + Sbjct: 376 LPNSTP--PTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 433 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + + + L + L+ Sbjct: 434 DANRVAC---VDKSFLTMGENFWKLSLKKL 460 >gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] gi|258554315|gb|ACV77257.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233] Length = 334 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 30/326 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + ++ + ++VA SGG+DS+ L + + + R +VDH L+ + Sbjct: 13 ACSAWLSAHAPGGPVVVACSGGADSLALTLGVLAAAGRR-----PVIGATVDHGLQPGSA 67 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------ 121 D +++ RL + V GL AAAR ARY ++ A+ A Sbjct: 68 DRAAGCAELMRRLGCVQTHVLTVTVTGDGGLEAAARRARYGALAALAQVAAAAGGAAGPA 127 Query: 122 -------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 ++ HT DDQ ETV + R + + + RP L R Sbjct: 128 ASAVRVPVLLGHTADDQAETVLLGLARGSGPRS-----IAGMRPWRA--PWGRPLLALTR 180 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKV 230 + + + + DP N D F RVR+RR + L ++ + DL Sbjct: 181 AQTEAAVHEAGLIPWSDPHNADPAFTRVRLRREALPLLEDVLGGGVRDALVRTADLMADD 240 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMER 289 A+ L L + + ++ + + L +LR A G G ++ ++R Sbjct: 241 LAALDDLAADALAGARSGDALLIEPLVPLPAALRRRVLRAWLAGAGAGPLTYDHLSRLDR 300 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANF 315 + + V G V R Sbjct: 301 QLTARTGSAQVRVPGGLDVSRRDGAL 326 >gi|331083661|ref|ZP_08332772.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA] gi|330403872|gb|EGG83424.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA] Length = 179 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 15/165 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72 + + +H++V +SGG+DS+ L + + + + A+ V+H +R E A + + Sbjct: 15 QMIPKNSHVIVGLSGGADSVC---LLKLLKEYKKQQEFQLYAVHVNHHIRGEEAVRDEEF 71 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI---NATLIMTA 125 VC +L + +V + + + L A R R + K I I A Sbjct: 72 SKAVCKKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKAMKNIKVSGRKRIALA 131 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 H +D ETV R G+G +T + PF+ Sbjct: 132 HHENDNAETVLHNLMRGSGAAGLG----GNTSCVRGEGLLYSPFV 172 >gi|111225920|ref|YP_716714.1| hypoxanthine phosphoribosyltransferase [Frankia alni ACN14a] gi|111153452|emb|CAJ65210.1| hypoxanthine phosphoribosyltransferase (partial match) [Frankia alni ACN14a] Length = 630 Score = 134 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 19/222 (8%) Query: 5 PIESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +VRF VR+ L A +LVA SGG DSM L AL V R+ ++ + VDH Sbjct: 39 AVAAVRFAVRNAVADLDPGALVLVACSGGPDSMSLAAALAFVAPRRA---LRAGLLVVDH 95 Query: 61 CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + + V++ L + V++ + + A R+A + A + A Sbjct: 96 GWDPASAERAHGVAERGEALGLRPVEVLTAHAPRSEGAARDARRDA----LLAAAARLGA 151 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ HT DDQ ETV +R R + +G D +L L + R E R+ Sbjct: 152 RAVLIGHTLDDQAETVLLRLARGSGARSLGGMRPRDGLLRRPLLGLRR-------EQTRA 204 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 L + +DP+N D F R RVR V + L + Sbjct: 205 ACLAERLPVWDDPTNEDPAFARARVRHRVLPLLEAELGPGIA 246 >gi|15611732|ref|NP_223383.1| hypothetical protein jhp0665 [Helicobacter pylori J99] gi|61216760|sp|Q9ZLB5|TILS_HELPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|4155227|gb|AAD06249.1| putative [Helicobacter pylori J99] Length = 338 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 20/212 (9%) Query: 8 SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 2 TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYSTQKQ 54 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +++ + + K AR+ RY K + ++ A Sbjct: 55 RLEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183 H +D+LE M+ KG GL+ + Y+ I RP L ++ +++ Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + + ED SN+ +F+R R+ + + Sbjct: 168 QK--FFEDDSNSSLKFKRNCFRKHYANALMQH 197 >gi|314922405|gb|EFS86236.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL001PA1] Length = 311 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 115/322 (35%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ +R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMEEVLGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + +N + + V + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLVRRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|239942229|ref|ZP_04694166.1| hypothetical protein SrosN15_14620 [Streptomyces roseosporus NRRL 15998] gi|239988695|ref|ZP_04709359.1| hypothetical protein SrosN1_15407 [Streptomyces roseosporus NRRL 11379] Length = 370 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 117/305 (38%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ I+VDH L+ + V + + Sbjct: 71 VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 127 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 128 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 187 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R L ++I +DP N D + R Sbjct: 188 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 243 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM----RSIIAISQDIL 257 R+R AL + + +++ A + + + L Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELTVRDETGRLECAGL 303 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + A I G + + + L +G RG +I GRV R+ Sbjct: 304 YALPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEALRQGG 363 Query: 315 FLWIT 319 L I Sbjct: 364 RLVIR 368 >gi|207093285|ref|ZP_03241072.1| hypothetical protein HpylHP_11036 [Helicobacter pylori HPKX_438_AG0C1] Length = 215 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 18/193 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 SGG DS+ L L I F VD+ ++ + +++ + Sbjct: 2 GFSGGVDSVCLFYLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + K AR+ RY K + ++ AH +D+LE M+ Sbjct: 55 YIH--YAPKIMHNFEMQARKIRYDFFETLTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108 Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG GL+ + Y+ I RP L ++ +++ ++ + ED SN+ +F+R Sbjct: 109 -KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRN 165 Query: 203 RVRRFVRDIDLHA 215 R+ + + Sbjct: 166 FFRKNYANSLMQH 178 >gi|291445684|ref|ZP_06585074.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998] gi|291348631|gb|EFE75535.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998] Length = 391 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 117/305 (38%), Gaps = 14/305 (4%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL ++ I+VDH L+ + V + + Sbjct: 92 VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 148 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + G AAAR+ARYA + A+ A ++ HT DDQ ETV + R Sbjct: 149 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 208 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + LSGM RPFL+ R+ R L ++I +DP N D + R Sbjct: 209 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 264 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM----RSIIAISQDIL 257 R+R AL + + +++ A + + + L Sbjct: 265 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELTVRDETGRLECAGL 324 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314 + + A I G + + + L +G RG +I GRV R+ Sbjct: 325 YALPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEALRQGG 384 Query: 315 FLWIT 319 L I Sbjct: 385 RLVIR 389 >gi|33592954|ref|NP_880598.1| hypothetical protein BP1912 [Bordetella pertussis Tohama I] gi|61216607|sp|Q7VX92|TILS_BORPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|33572602|emb|CAE42194.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332382366|gb|AEE67213.1| hypothetical protein BPTD_1884 [Bordetella pertussis CS] Length = 321 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 103/323 (31%), Gaps = 34/323 (10%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 PA + VAVSGG+DS L + V H L+ A V + Sbjct: 10 PAPARLAVAVSGGADS----AMLAVAAAAALPPGCTLRLFHVHHGLQAAADQWAAQVRGL 65 Query: 77 CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L + Q G+ AAAR ARY ++ A+ I+ AH +DQ ETV Sbjct: 66 GALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETV 125 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----LQRNISWCED 191 +R R +GM + RP+L I + Q +D Sbjct: 126 LLRLLRGTGLQGMAAM---APFSERDGVAYLRPWLDVDHAAILALAGAVRAQCGWQAVQD 182 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 P+NTD R+ R VR + AL + +Q + + +A V Sbjct: 183 PTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVAEVAQADFAT 238 Query: 252 ISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----- 296 + + + LR A +P + + L+ Sbjct: 239 LEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQRQLRQLHALG 296 Query: 297 -GKRGCVSIGRVVIDRRANFLWI 318 + V+ +WI Sbjct: 297 HDRHLRWQHAGRVVRCERGRVWI 319 >gi|208434638|ref|YP_002266304.1| hypothetical protein HPG27_683 [Helicobacter pylori G27] gi|208432567|gb|ACI27438.1| hypothetical protein HPG27_683 [Helicobacter pylori G27] Length = 338 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 20/202 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKNYLEPLREGKNLLGFSGGLDSTCLFYLLVG-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +++ + + K AR+ RY K + ++ AH Sbjct: 56 LKIIQHAQKLAKTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLTKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ I RP L ++ +++ + Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168 Query: 185 NISWCEDPSNTDDRFERVRVRR 206 + ED SN+ +F+R R+ Sbjct: 169 K--FFEDNSNSSLKFKRNFFRK 188 >gi|155122075|gb|ABT13943.1| hypothetical protein MT325_M389R [Paramecium bursaria chlorella virus MT325] Length = 499 Score = 133 bits (336), Expect = 5e-29, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 30/270 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 P +++++SGGSDSM +H + + + V++ R +A E +V+D Sbjct: 192 QRPTKLIMSISGGSDSMVAFHIIHGL---KEAFGYDIDVVMVNYTNRNSAYAEEAFVADW 248 Query: 77 CSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTINATLIMTAHTF 128 + V K + R+ RYA KT+ ++ H Sbjct: 249 VNSFGYPLHVRRIDEIKRKQCADNQLRTVYEKYTRDVRYA----TYKTLGPHPVVMGHNK 304 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD LE + +K LSGM DT++ + RP L + DI ++ + I + Sbjct: 305 DDCLENILQNI--GSCQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPF 361 Query: 189 CEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +R ++R V + + L+ K D+ V +V M + + Sbjct: 362 LPNSTP--PTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 419 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 + + + L + L+ Sbjct: 420 DANRVAC---VDKSFLTMGENFWKLSLKKL 446 >gi|317014141|gb|ADU81577.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Gambia94/24] Length = 338 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKNYLEPLREGQNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K AR+ RY K + ++ AH Sbjct: 56 LEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLIKEHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ I RP L ++ +++ + Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 169 K--FFEDDSNSSLKFKRNCFRKNYANALMQH 197 >gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1] Length = 167 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%) Query: 3 LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 LSP E R + + VAVSGG+DS+ + + +R A++VDH Sbjct: 4 LSPAEFASLMDRLGPFEPRPRLAVAVSGGADSLAATLLAAHWVHERRG---TLVALTVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + E V + I H ++ W KP + + AR ARY L+ ++ + Sbjct: 61 RLRPNSTAEAVLVGQWLANHGIEHHILPWLGDKPVSDIQGRARAARYGLLEQYCRQAGIL 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152 ++ AH DDQ ET +R R G+ G Sbjct: 121 HLLLAHHRDDQAETFLLRLARGSGVDGLLAHG 152 >gi|313835713|gb|EFS73427.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA2] gi|314928385|gb|EFS92216.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL044PA1] gi|314970191|gb|EFT14289.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA3] Length = 317 Score = 133 bits (335), Expect = 6e-29, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 116/324 (35%), Gaps = 29/324 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SRWASRRCRSDVR--VVIVDHRL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + D + + + V G AAAR AR A + + A Sbjct: 65 QQGSDDVAERTRQLLASRGMDARVRRVDVDAEDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTLDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEIRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAML 237 + + +DP N D RF R RVR + + L + + L + VA Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMAEVLGPGVAESLARSAALLAGEDQVVARA 234 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 + H S +S + +++ L +++ ++ V+ L+ Sbjct: 235 ARVWADEHGVSSDELS-GLCGVEAGLARRVVKEWL-------PEARMVHVDSVLGLLEGP 286 Query: 298 KRGCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++TR Sbjct: 287 GGAGVDVPGGRVEVRRGTLYLTRR 310 >gi|162455575|ref|YP_001617942.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56'] gi|161166157|emb|CAN97462.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56'] Length = 321 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 18/243 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + E + R L +L A SGG DS LL L + + A VDH Sbjct: 1 MIRLAERLIRDERLLARGDVVLCACSGGPDSTALLHVLSLLRRRIGH---EVVAHGVDHG 57 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 LR A E+ D+ +L + ++ + P L A AR AR+A ++ A A Sbjct: 58 LRAAAAAELAIARDLSEQLGVPYAETRVDVA-PGANLQARARAARFAALAAAAAAHGARA 116 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------------NLWISR 167 I T HT DD+ ETV +R R +G+ + + + ++ + R Sbjct: 117 IATGHTADDRAETVLLRLLRGAGPRGLAVLPPRAPLPSGVAGAACGGVEPGSAASIELIR 176 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P L+ RR D+ + L + +++ EDPSN D RF RVRVRR + + ++ L Sbjct: 177 PLLQARRADVLAHLGRHRLAFAEDPSNRDPRFTRVRVRRELLPLLEDLSPAIVEHLCALS 236 Query: 228 VKV 230 + Sbjct: 237 DML 239 >gi|108796857|ref|YP_636406.1| hypothetical chloroplast RF62 [Staurastrum punctulatum] gi|122211798|sp|Q32RX0|TILS_STAPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|61393625|gb|AAX45766.1| hypothetical chloroplast RF62 [Staurastrum punctulatum] Length = 493 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 78/223 (34%), Gaps = 48/223 (21%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L IL+AVSGG DS+ LL L + S+ K I DH +K + +V+ Sbjct: 57 LQPKQRILIAVSGGQDSICLLRILFDLQRKWSW---KLGIIHCDHRWNSRSKIQAEHVAC 113 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + L+I + S + + AR RY +I A + N T I+T H D++ET+ Sbjct: 114 LAINLQINYHEGIAIESVQKESI---ARLWRYNVIQSVAISNNYTAIITGHNASDRIETL 170 Query: 136 YMRSQRDYAEKGMGLSGMCDTILY------------------------------------ 159 R G+ + + Sbjct: 171 LYNLMRGSGLHGLQSIKWKRNLCFSHFTRSVLSKIKFSFLVKKLKFIKTFMDHEDFQGNH 230 Query: 160 ------DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 L + RPFL R +IR+ L N D SN + Sbjct: 231 FFFLKKRKQLHLIRPFLETTRTEIRNILTIWNFPSWPDVSNKE 273 >gi|315082137|gb|EFT54113.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL078PA1] Length = 311 Score = 133 bits (334), Expect = 7e-29, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 111/320 (34%), Gaps = 21/320 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + ++ + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGPEVAASLARSATLLAGEDEIVARV 234 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + ++ + + RV + ++ V+ L Sbjct: 235 ARMWADEHGVKANELPGLRGVEVGLARRVVKEW----LPQARMVHVDAVLGLLDGPGGAG 290 Query: 302 VSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 291 VDVPGGRVEMRQGTLYLARR 310 >gi|307637409|gb|ADN79859.1| tRNA Ile-lysidine synthetase [Helicobacter pylori 908] gi|325996000|gb|ADZ51405.1| tRNA Ile -lysidine synthetase [Helicobacter pylori 2018] gi|325997595|gb|ADZ49803.1| tRNA Ile-lysidine synthase [Helicobacter pylori 2017] Length = 338 Score = 133 bits (334), Expect = 8e-29, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 20/211 (9%) Query: 9 VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 R F L + L+ SGG DS L L I F VD+ ++ Sbjct: 3 ARDFKNYLEPLREGQNLLGFSGGLDSTCLFFLLVG-------ENIAFDIALVDYNTQKQR 55 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++ + + K AR+ RY + + ++ AH Sbjct: 56 LEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKIRYDFFEALMREHSYKHLILAH 113 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184 +D+LE M+ KG GL+ + Y+ I RP L ++ +++ + Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 + ED SN+ +F+R R+ + + Sbjct: 169 K--FFEDDSNSSLKFKRNCFRKNYANALMQH 197 >gi|145344203|ref|XP_001416626.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576852|gb|ABO94919.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 714 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 16/233 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + I V++SGG DSM L L + +D+ R + +E +V Sbjct: 248 RMSEFGNSIAVSLSGGVDSMVLAYILK-------HQGYDVVTLHIDYKNRPESTEEADFV 300 Query: 74 SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D R + + + P+ +R RY E ++ H Sbjct: 301 DDWSLRHGMKFERCTVDQIRRGVTPREQYEIESRRIRYGFYKEAGAKHGFPAVLLGHHHG 360 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D E + R + ++GM D + + + I RP L ++D+ +F I + Sbjct: 361 DVQENIITNLMRGANL--LSVNGMSDEGVVE-GVRIWRPMLSHVKDDVLTFAHAYGIPYF 417 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D + T R ++R + + + + + + + + ++ ++ K L Sbjct: 418 LDSTPTWS--TRGKLRNQLVPLLEDMFGIGLLRNLSVIGENSEQLSEMVDKSL 468 >gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 815 Score = 132 bits (333), Expect = 9e-29, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 6/157 (3%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + P +I +AVSGG DSM L ++ + + A VDH RE + DE V Sbjct: 35 KENALPRNIALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + V++ + + AR RY + T N + H Sbjct: 95 AGWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHH 154 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 DD +ET +R + + G+ I +LW Sbjct: 155 RDDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLW 191 Score = 53.4 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 3/100 (3%) Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA--LY 217 ++I RPF + + + + + DP+N D R VR+ + DL Sbjct: 242 GGVYIFRPFRSFPKARLEATCRVARVPFVIDPTNEDHTLTIRNTVRKLLSSGDLPRALQS 301 Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 + F + + L +L + + S L Sbjct: 302 PSILAFISKNQRAKERLQDLTDSFLKLVRVNNFDFSSGTL 341 >gi|50841748|ref|YP_054975.1| hypothetical protein PPA0258 [Propionibacterium acnes KPA171202] gi|61216489|sp|Q6AB49|TILS_PROAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|50839350|gb|AAT82017.1| conserved protein [Propionibacterium acnes KPA171202] gi|313765283|gb|EFS36647.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA1] gi|313793177|gb|EFS41244.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA1] gi|313802735|gb|EFS43953.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA2] gi|313806392|gb|EFS44899.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA2] gi|313810942|gb|EFS48656.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA1] gi|313814560|gb|EFS52274.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA1] gi|313815348|gb|EFS53062.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA1] gi|313817471|gb|EFS55185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA2] gi|313821993|gb|EFS59707.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA1] gi|313824111|gb|EFS61825.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA2] gi|313826478|gb|EFS64192.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA1] gi|313828787|gb|EFS66501.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA2] gi|313831707|gb|EFS69421.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL007PA1] gi|313834411|gb|EFS72125.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL056PA1] gi|313840398|gb|EFS78112.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL086PA1] gi|314916064|gb|EFS79895.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA4] gi|314917215|gb|EFS81046.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA1] gi|314921715|gb|EFS85546.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA3] gi|314926568|gb|EFS90399.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA3] gi|314931078|gb|EFS94909.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL067PA1] gi|314955053|gb|EFS99459.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA1] gi|314959092|gb|EFT03194.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA1] gi|314961366|gb|EFT05467.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA2] gi|314964589|gb|EFT08689.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA1] gi|314969688|gb|EFT13786.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA1] gi|314974753|gb|EFT18848.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA1] gi|314977049|gb|EFT21144.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL045PA1] gi|314980291|gb|EFT24385.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA2] gi|314985465|gb|EFT29557.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA1] gi|314987375|gb|EFT31466.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA2] gi|314989084|gb|EFT33175.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA3] gi|315078394|gb|EFT50425.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA2] gi|315082718|gb|EFT54694.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA2] gi|315086077|gb|EFT58053.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA3] gi|315087663|gb|EFT59639.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA1] gi|315097300|gb|EFT69276.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL038PA1] gi|315099488|gb|EFT71464.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA2] gi|315102006|gb|EFT73982.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA1] gi|315106294|gb|EFT78270.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA1] gi|315110072|gb|EFT82048.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA2] gi|327331330|gb|EGE73069.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA2] gi|327333316|gb|EGE75036.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA3] gi|327334836|gb|EGE76547.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL097PA1] gi|327445206|gb|EGE91860.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA2] gi|327447289|gb|EGE93943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA1] gi|327450264|gb|EGE96918.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA2] gi|327454530|gb|EGF01185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA3] gi|327456600|gb|EGF03255.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA2] gi|327457124|gb|EGF03779.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL092PA1] gi|328755584|gb|EGF69200.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA1] gi|328756910|gb|EGF70526.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA2] gi|328758406|gb|EGF72022.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL020PA1] gi|328761143|gb|EGF74687.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL099PA1] gi|332674666|gb|AEE71482.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes 266] Length = 311 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ R + V G AAAR AR A + + A Sbjct: 65 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + + + + V A + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|255505459|ref|ZP_05346248.3| PP-loop family protein [Bryantella formatexigens DSM 14469] gi|255267760|gb|EET60965.1| PP-loop family protein [Bryantella formatexigens DSM 14469] Length = 268 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 14/219 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + I V +SGG DS+ LL AL + + A++VD + Sbjct: 10 QMIEEGDRIAVGISGGKDSLTLLYALQGLRRFYP-KHFELEAVTVDLG-HPGFDTTA--I 65 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +C L + ++VV + + ++ + + R +++ K + AH Sbjct: 66 EALCHELEVPYTVVKTEIAAIVFEQRKESNPCSLCAKMRKGALNDVVKGHGCNKVAYAHH 125 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET+ + +G S T L ++L + RP + D+ F + ++ Sbjct: 126 KDDIIETMLLSLI----FEGRFHSFSPRTYLDRMDLTVIRPLMFVSEADVIGFQNKYHLP 181 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R + +R ++L +K + F + Sbjct: 182 VAKSRCPADGYTKREYAKNLLRQLNLDFPGVKERMFSAI 220 >gi|154508551|ref|ZP_02044193.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC 17982] gi|153798185|gb|EDN80605.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC 17982] Length = 369 Score = 132 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 7/192 (3%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ S+ F+ P ++V +SGG+DS+ L + V + I ++VDH L Sbjct: 22 LAVRASLTSFIDEAGAPPALVVGLSGGADSLALALTTIDVAAR---AGIPVVTVTVDHGL 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 R + +E R V+D L V + P G +AR+AR A + A+ A I Sbjct: 79 RAGSGEEARRVADRAESLGARAVVETVSVEGPG-GPEGSARDARRAALRAVAQREGAP-I 136 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV +R R L + D + RP L RR D Sbjct: 137 LLGHTMDDQAETVLLRLARGSGP--SSLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACA 194 Query: 183 QRNISWCEDPSN 194 Q ++ +DP+N Sbjct: 195 QAGLTPIQDPTN 206 >gi|225378080|ref|ZP_03755301.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM 16841] gi|225210081|gb|EEG92435.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM 16841] Length = 248 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 16/220 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRY 72 + + I V +SGG DS+ LL A+ ++ R + KI AI+VD ++ Sbjct: 18 QMIQEGDKIAVGISGGKDSLTLLYAMANLR--RFYPKIFSLIAITVDLG---YEGFDLTP 72 Query: 73 VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V +C L++ + +VS + N K + + + R +++ K + + AH Sbjct: 73 VKLLCEHLQVEYHIVSTEITKIIFNDKNEASPCSLCAKLRKGALNQKIKELGCNKVAYAH 132 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +ET+ + +G S T L + L + RP + +++ F + N+ Sbjct: 133 HMDDMIETMVLSMI----FEGRFYSFSPVTFLDRMELTVIRPMMYVSEAEVKGFRNKYNL 188 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 E+P D +R + VR I+L K + F + Sbjct: 189 PVVENPCPVDGVTKRQYAKDLVRQINLDHPGAKKRMFTAI 228 >gi|217033054|ref|ZP_03438522.1| hypothetical protein HPB128_5g7 [Helicobacter pylori B128] gi|216945226|gb|EEC23909.1| hypothetical protein HPB128_5g7 [Helicobacter pylori B128] Length = 319 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 18/184 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 SGG DS+ L L I F VD+ ++ + +++ + Sbjct: 2 GFSGGLDSVCLFHLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + K AR+ RY K + ++ AH +D+LE M+ Sbjct: 55 HIH--YAPKIARNFEMQARKIRYDFFEALTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108 Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG GL+ + Y+ I RP L ++ +++ + ED SN+ +F+R Sbjct: 109 -KGAGLNTLLGFQAYEKRESYAIVRPLLYTPKDTLKTLAKDHK--FFEDDSNSSLKFKRN 165 Query: 203 RVRR 206 R+ Sbjct: 166 FFRK 169 >gi|262196733|ref|YP_003267942.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365] gi|262080080|gb|ACY16049.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365] Length = 427 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 109/315 (34%), Gaps = 16/315 (5%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +L I VA SGG DS L A + S + + VDH LR + + Sbjct: 14 AHALGPEDAIGVACSGGPDSSALAHACLRLASAERARIGPVTLLHVDHGLRPDSGADAAA 73 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + A VV + + + L AAAR+AR+A + A+ + ++ AHT DQ Sbjct: 74 VYALAEPFGAAVHVVRAEVDRDRASLEAAARDARFAALDALAEQLGLRFVLLAHTASDQA 133 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ETV MR R G+ RP L R DI ++ + + DP Sbjct: 134 ETVLMRVLRGTGVFGLAAMQ-------PRRGRYLRPLLGLERGDIEAYCARAGVVALADP 186 Query: 193 SNTDDRFERVR--------VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 N D F RVR +R AL + R ++ A L+ + Sbjct: 187 MNRDPAFLRVRVRRRWLPALREE-NPRIDRALCRLAESAAQQREVLSYAAERLLAEARAS 245 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304 + + + L G + + +L + +S+ Sbjct: 246 DADEPAYRVAALRQAPAAVRARALAEMCTRVGAPPPEAVHLAAIDALLAASAAGSRRLSL 305 Query: 305 GRVVIDRRANFLWIT 319 +R + L++ Sbjct: 306 PGAEAERAYDRLYVR 320 >gi|160892659|ref|ZP_02073449.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50] gi|156865700|gb|EDO59131.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50] Length = 251 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 14/216 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS+ LL AL + K AI+V+ + + +C Sbjct: 23 GDKIAVGISGGKDSLTLLYALAELRRFYP-KKFDLIAITVNLGF---DNFDTAKIEQLCK 78 Query: 79 RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + +V + N + + + + R +++ + I AH DD + Sbjct: 79 ELDVPYYIVDTEIYDIVFNVRKEKNPCSLCAKMRKGALNQKLNDLGCNKIAYAHHKDDFI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M +G + T L L + RP + +I SF + + P Sbjct: 139 ETFLMSLL----YEGRIHTFSPKTYLDKSELMVIRPLMYINEGEIISFKNDMQLPVIKSP 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 D +R ++ + ++ K + F + Sbjct: 195 CPADGYTKREYAKQTLAKLEKETPGCKQRIFSAIER 230 >gi|207108515|ref|ZP_03242677.1| hypothetical protein HpylH_02927 [Helicobacter pylori HPKX_438_CA4C1] Length = 314 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 18/193 (9%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 SGG DS+ L L I F VD+ ++ + +++ + Sbjct: 2 GFSGGVDSVCLFYLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 + K AR+ RY K + ++ AH +D+LE M+ Sbjct: 55 YIH--YAPKIMHNFEMQARKIRYDFFETLTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108 Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 KG GL+ + Y+ I RP L ++ +++ ++ + ED SN+ +F+R Sbjct: 109 -KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRN 165 Query: 203 RVRRFVRDIDLHA 215 R+ + + Sbjct: 166 FFRKNYANSLMQH 178 >gi|254574078|ref|XP_002494148.1| hypothetical protein [Pichia pastoris GS115] gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Pichia pastoris GS115] Length = 483 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 21/183 (11%) Query: 9 VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68 V+ F L P + +++SGG DSM L L + + G ++ A++V+H R+ ++ Sbjct: 14 VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLI 122 E V + + L + H ++ K + AR RY I ++ + + Sbjct: 71 EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----------LNLWISRPFLRC 172 H +DQ+ET +R +++ G+ M D Y + I RP L Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTI--FGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNI 188 Query: 173 RRE 175 +++ Sbjct: 189 KKK 191 >gi|289424614|ref|ZP_06426397.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187] gi|289428939|ref|ZP_06430619.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165] gi|295129827|ref|YP_003580490.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137] gi|289155311|gb|EFD03993.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187] gi|289157940|gb|EFD06163.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165] gi|291376956|gb|ADE00811.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137] Length = 317 Score = 131 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 17 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 70 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ R + V G AAAR AR A + + A Sbjct: 71 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 127 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 128 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 180 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + L ++ + + +L + Sbjct: 181 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 234 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + + + + V A + + ++ V+ L Sbjct: 235 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 294 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 295 AGVDVPGGRVEMRQGTLYLARR 316 >gi|52353974|ref|NP_048910.2| hypothetical protein PBCV1_A554/556/557L [Paramecium bursaria Chlorella virus 1] gi|34482010|dbj|BAC84999.1| hypothetical protein [Paramecium bursaria Chlorella virus 1] gi|52221432|gb|AAC96914.2| similar to MesJ cell cycle protein [Chlorobium tepidum], corresponds to accession number AAG12421 [Paramecium bursaria Chlorella virus 1] Length = 498 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 27/252 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V +R V P I +++SGG DSM L L + R F K + V++ R Sbjct: 185 VKAVEKALRD-VKPGEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRAC 240 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117 A DE +V+D + L SV + + + R+ RY + Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTYKTIS--- 297 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + + H DD LE + K L+GM DT++ + RP L ++DI Sbjct: 298 HGAFVAMGHNKDDCLENILQNIC--SGHKYDNLNGM-DTVVVQDGIKFFRPLLGVSKDDI 354 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKV 230 + NI + + + F+R VR V + L+ ++ + + Sbjct: 355 IEYARGHNIPYLPNSTPA--HFKRGMVRNSVVPCMNDWDDRFIPGLFKLKDTMGEMSMMM 412 Query: 231 NNAVAMLIPKYL 242 + K+ Sbjct: 413 EITAKEFVNKFE 424 >gi|325263925|ref|ZP_08130658.1| ExsB family protein [Clostridium sp. D5] gi|324030963|gb|EGB92245.1| ExsB family protein [Clostridium sp. D5] Length = 244 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + HI V +SGG DS+ LL ALH + + SAI+V+ ++ + Sbjct: 20 IQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KHFELSAITVNLGF---ENFDLSPIQA 75 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + +V + + + +T + + R +++ K + + AH D Sbjct: 76 LCKELEVPYRIVDSEIYHILFDVRKETNPCSLCAKMRKGALNDAIKEMGCNKVAYAHHKD 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ + +G S T L ++L + RP + D+ F + N+ Sbjct: 136 DIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPIMFIDEADVIGFKNKYNLPVV 191 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R + VR ++ + + F+ + Sbjct: 192 GSKCPVDGYTKRQYAKELVRQLNTEHPGARERMFRAI 228 >gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycobacterium marinum M] gi|183178419|gb|ACC43529.1| cell cycle protein MesJ [Mycobacterium marinum M] Length = 323 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 27/275 (9%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 +F L + +SGG DS+ L + +A+ VDH L+ + Sbjct: 16 KFASTHLDATDRWSIGLSGGPDSLALTAVAARLRPT--------TALIVDHGLQPDSAAV 67 Query: 70 VRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTA 125 L +A V+ + P R ARY + H ++ A Sbjct: 68 SETARAQAVSLGCVAARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGP----VLLA 123 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ETV + R + + + RP L RR + Sbjct: 124 HTLDDQAETVLLGLGRGSGARSIAGM-------RPHDPPWCRPLLGVRRGVTHDACRELG 176 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ++ +DP N+D RF R R+R V + L + A L+ Sbjct: 177 LTAWQDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEA 236 Query: 246 MRSIIAISQD----ILNIDSTLLFYLLRVSAAICG 276 + + + S + + + ++R G Sbjct: 237 LPTAVVDSGLDTSVLATLPDPVRRRVIRSWLLAGG 271 >gi|306836931|ref|ZP_07469883.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium accolens ATCC 49726] gi|304567186|gb|EFM42799.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium accolens ATCC 49726] Length = 345 Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 48/296 (16%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R VR+ + V +SGG+DS+ L A+ + D A+ VDH L++ ++ Sbjct: 20 ACRRAVRAAQLDHTVGVGLSGGADSLALCAAMIAEGHD-------VIALCVDHGLQDGSR 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-------------LMAAAREARYALISEHA 114 ++ + L V+ + + + AAA E R S A Sbjct: 73 EQAERAARQAESLGARARVLEVQVPEEAGNSLEAAARQARYQAMSAAACEGRENAASCRA 132 Query: 115 --------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160 + A I AHT DDQ ET+ + + R ++GM + + + Sbjct: 133 EICERDAEPGKAARRGERALEIAVAHTADDQAETLLLGALRGR------VAGMPERAVVE 186 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 + RPFL+ RR D + + +DP N D F RV +RR + + Sbjct: 187 -GARVVRPFLQVRRADTEGACAELGLEVWQDPQNADTDFRRVALRREIIPELSRVIG--- 242 Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 D + A + + + A ++ + + G Sbjct: 243 ---GDAVPALAQAAMDTVRDEEYLATAAT-ADCAELAALPEPRRRRAIAAWLIERG 294 >gi|197122778|ref|YP_002134729.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K] gi|196172627|gb|ACG73600.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K] Length = 450 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 138/399 (34%), Gaps = 25/399 (6%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E+ R R L PA +LVA+SGG+DS + + + A+ +DH LR Sbjct: 14 LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRA 69 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ E C+RL + + A AR RYA + E A AT I T Sbjct: 70 GSEPEAASARAACARLGVPLEERRLAVGA--GNVQAEARRVRYAALREAAARAGATRIAT 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DQ ETV +R R +G+ + + RP + RE+ ++L Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGAVIRPLIDRTREEGNAYLRAI 180 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +DP+N + R R+R + + A + + + Sbjct: 181 GLRWADDPTNAVPGYARNRLRLELWPLLRAAAPAADRALARAADLARED-ERALDRRARA 239 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303 A+ L + + + G + + V+ L+ G+ G V+ Sbjct: 240 VAGGGTAVDVAALRGEPLAVRRRVVRRLWRAATGSGRALEAQHVAAVLALLRRGRPGEVA 299 Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL--ILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 + G R L + +P + + P GRY L ++ ++IG Sbjct: 300 LPGGRRARCRYGRLELAGPAAPVPEVSPVEVPG-----PGRYALPAL-EAWVEIGAARPA 353 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 P + G K R + + Sbjct: 354 AVPWPLTLRTRRPGDRFRPEGGPGGTKLKRWLIDRKVPR 392 >gi|225561815|gb|EEH10095.1| PP-loop family protein [Ajellomyces capsulatus G186AR] Length = 688 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH RE + DE + V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFIVDHLAREGSTDEAQKVAGWLR 98 Query: 79 RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ + S + AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCDT 156 TV R R + GL G+ Sbjct: 159 TVLSRLTRGQ-RQATGLKGVASI 180 Score = 52.6 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210 + + +++ RPF + + S L+ I + D +N D R +R + R Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + ++ ++ Q + ++ N + Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338 >gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycobacterium leprae TN] gi|221229493|ref|YP_002502909.1| hypothetical protein MLBr_00213 [Mycobacterium leprae Br4923] gi|6137303|sp|O69538|TILS_MYCLE RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|3097231|emb|CAA18805.1| hypothetical protein MLCB2548.18c [Mycobacterium leprae] gi|13092562|emb|CAC29721.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932600|emb|CAR70306.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length = 323 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 58/261 (22%), Positives = 94/261 (36%), Gaps = 27/261 (10%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-I 82 VA+SGGSDS+ L + S +A VDH L+ + L + Sbjct: 30 VALSGGSDSLALTAVAAQLRST--------TAFIVDHGLQSDSAAVAETARKQAISLGCV 81 Query: 83 AHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 V+ + P+ GL AAAR A ++ AHT DDQ ETV + Sbjct: 82 DAQVLCVQIDPPFGPKGGLEAAARAA----RYAVLGANRNGPVLLAHTLDDQAETVLLGL 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R + + + RP L RR R+ + ++ +DP NTD R+ Sbjct: 138 GRGSGARSIAGM-------RPHDPPWCRPLLGVRRSVPRAACHELGLNAWQDPHNTDCRY 190 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA----ISQD 255 R R+R V + L + + LI + + +I A ++ Sbjct: 191 TRTRLRLEVLPLLEDVLGGGVVEALARTATALREDTELIDTFAAQALPNICAGSGLHARA 250 Query: 256 ILNIDSTLLFYLLRVSAAICG 276 + + + ++R G Sbjct: 251 LAALPDAVRRRVIRGWLLNGG 271 >gi|225028631|ref|ZP_03717823.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353] gi|224954041|gb|EEG35250.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353] Length = 241 Score = 130 bits (328), Expect = 4e-28, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 14/213 (6%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DS+ LL AL + + K A++VD + + + C + Sbjct: 24 DKIAVGISGGKDSLTLLYALSYLRNFYPH-KFDIVAVTVDLGF---DNLNLEEIREFCKK 79 Query: 80 LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L + + ++ + + ++ + + R +++ K + + AH DD LE Sbjct: 80 LGVEYQIIKTQIAEVVFQVRKESNPCSLCAKMRKGALNDAMKELGCNKVAYAHHKDDLLE 139 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ M +G + T L L + RP L D++ F+ + N+ + P Sbjct: 140 SMMMSFL----FEGRIHTFAPVTYLDRSGLTVIRPLLFLYEGDVKGFVKEYNLPVVKSPC 195 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R V+ + +I+ K + + + Sbjct: 196 PVDGSTKRENVKNLIGEINHQYPGAKARMIRAV 228 >gi|157953860|ref|YP_001498751.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella virus AR158] gi|156068508|gb|ABU44215.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella virus AR158] Length = 504 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 27/252 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V +R V P I +++SGG DSM L L + R F K + V++ R Sbjct: 185 VKAVEKALRD-VKPGEITMSLSGGVDSMTLFHILDGL---RGFYDYKMNVAMVNYTNRVC 240 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117 A DE +V+D + L SV + + + R+ RY ++ Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTYKTISRE- 299 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD LE + K L+GM D ++ + RP L ++DI Sbjct: 300 --AFVAMGHNKDDCLENILQNIC--SGHKYDNLNGM-DIVVVQDGIKFFRPLLDVSKDDI 354 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKV 230 + NI + + + F+R VR + + L+ +++ + + Sbjct: 355 IEYARGHNIPYLPNSTPA--HFKRGMVRNSIVPCMNDWDDRFIPGLFKLRDTMREMSMMM 412 Query: 231 NNAVAMLIPKYL 242 + K+ Sbjct: 413 EITAKEFVNKFE 424 >gi|269128702|ref|YP_003302072.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183] gi|268313660|gb|ACZ00035.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183] Length = 335 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 116/318 (36%), Gaps = 15/318 (4%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L +LVA SGG+ L + + + ++VDH L+E + + V Sbjct: 20 ELPAGMPVLVACSGGA---DSLALAAATAFEAPRAGRRAGGVTVDHRLQEGSGHVAQTVV 76 Query: 75 DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + + G AAR ARYA + E A+ A ++ HT DDQ ET Sbjct: 77 RAMRELGLDPAESVAVTVTGPGGPENAARRARYAALDEAARRAGA-AVLLGHTLDDQAET 135 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + L+GM + RP L R R ++ +DP N Sbjct: 136 VLLGLARGSGAR--SLAGMPPRFQRGE-ICYMRPLLGLERATTRRACRAMGLTPWDDPHN 192 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV----NNAVAMLIPKYLTVHMRSII 250 D + RVR+RR V AL + ++ A+ L + + Sbjct: 193 EDPAYTRVRLRREVMPALEKALGPGVAAALARTARLLRDDAEALDALAERARSEVTGDDG 252 Query: 251 AISQDIL-NIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 A+ L + + +LR +A G G ++ ++R++ + + + G Sbjct: 253 ALDAAALGELPRAVRTRVLRGAAVEAGSPAGTLAAVHVEELDRLITDWRGQRHVDLPGGV 312 Query: 307 VVIDRRANFLWITRAVRN 324 + R L+ + Sbjct: 313 RALRRYGKLLFRRGEIAA 330 >gi|221632326|ref|YP_002521547.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM 5159] gi|221156484|gb|ACM05611.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM 5159] Length = 695 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 21/282 (7%) Query: 4 SPIESVRFFVRSLVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 S I +V VR+ + A I+V SGG DS+GLL +L + + R + Sbjct: 42 SAISAVLRVVRTALEEAGLSGHDRIIVGFSGGPDSLGLLWSLQHL-AHRGLAPTPIP-VH 99 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEH 113 +DH L+ ++ + S L + VV S + GL A AR ARYA +++ Sbjct: 100 IDHGLQSSSSTMAERAIALGSELGLVVRVVQVNVSLWPEYKEGGLEAGARAARYAALAQV 159 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS--------GMCDTILYDLNLWI 165 A+ + I HT DDQ ETV +R R G+ + ++ + Sbjct: 160 ARAEGTSWITVGHTRDDQAETVLLRLLRGAGLDGLAAMRPVTELRIPLDPLHREFASIRL 219 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 RP LR RR +R+ + + EDP+N +ER +RR V I Sbjct: 220 IRPLLRIRRSVVRAAVELLGLQPLEDPTNLLLSYERNAIRRRVLPILEQLRPGTTDALAQ 279 Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + ++ A + + + D L +D L Sbjct: 280 VAEQL-REDAEFLQRVARETSAQVFRPEADFLILDRAAFRAL 320 >gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus ATCC 19977] gi|169239592|emb|CAM60620.1| Putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus] Length = 296 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 18/258 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + VA+SGG ++ + +A+ VDH L++ + L Sbjct: 4 VAVALSGG-------ADSLALAAAAVARAWSVTALIVDHGLQQDSAQVAARARSQALALG 56 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +VV GL AAAR ARYA + + + ++ AHT DDQ ETV + R Sbjct: 57 CSDAVVLSVTVDGVGGLEAAARSARYAALEQAR---DGRPVLLAHTLDDQAETVLLGLGR 113 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + + +D RPFL RR + RS+ + I+ EDP N D RF R Sbjct: 114 GSGARS-----IAGMRPWDD--PWGRPFLDRRRTETRSYCDELAITAWEDPHNVDSRFVR 166 Query: 202 VRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260 VR+R V + L + + + + L + + D+ + Sbjct: 167 VRLRHEVLPLLEEVLGGGVAEALARTALSLQDDGDALDAQARAAFPGAQGLAISDLRGLT 226 Query: 261 STLLFYLLRVSAAICGGQ 278 + ++R+ G Q Sbjct: 227 PAVRRRVIRLWLLAGGAQ 244 >gi|157953048|ref|YP_001497940.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella virus NY2A] gi|155123275|gb|ABT15143.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella virus NY2A] Length = 504 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 20/213 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V +R V P+ I +++SGG DSM L L + R F K + V++ R Sbjct: 185 VKAVEKALRD-VKPSEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRAC 240 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117 A DE +V+D + L SV + + + R+ RY + Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDANIRTLYETYTRKVRYNTYKSISHE- 299 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD LE + K L+G+ + D N RP L +++I Sbjct: 300 --AFVAMGHNKDDCLENILQNIC--SGHKYDNLAGIVTVVKQDDN-NFFRPLLDVSKDEI 354 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 ++ NI + + + F+R VR FV Sbjct: 355 IAYARYHNIPYLPNSTPA--HFKRGMVRNFVVP 385 >gi|302389237|ref|YP_003825058.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646] gi|302199865|gb|ADL07435.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646] Length = 247 Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 15/206 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ ++ + I V VSGG DS LL L ++ S A+++D Sbjct: 9 FLTKVKKAIIDYGMIENGDKIAVGVSGGKDSTTLLYIL-DLVRKHSPLDFDIVAVNIDLG 67 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAK 115 + ++ + D C L+I VV ++ ++ + R + A Sbjct: 68 W----EMDLTPLEDFCRNLQIPLKVVKTDIARVVFEIRKESNPCSLCSRMRRGTLDSAAV 123 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + AH DD +ET+ + G + T L N+ + RP + Sbjct: 124 ELGCNKVALAHHADDVIETLLLNLI----FTGRFDTFEPKTYLSRKNVTLIRPLIYLSER 179 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFER 201 I++ + R + E P D R +R Sbjct: 180 TIKTIVKSRGLPVIESPCPADGRTKR 205 >gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 770 Score = 130 bits (326), Expect = 6e-28, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 109/308 (35%), Gaps = 19/308 (6%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 S I++++SGG DSM + AL + + ++ +A+ +D+ R +K E YV Sbjct: 410 SNPKTRKIIISLSGGVDSMVIASALAHLRRSLGY-NLQLTAVHIDYANRPDSKAEASYVE 468 Query: 75 DVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 C +L I + V + T + R SE + + +M H D E Sbjct: 469 RYCQQLEIEYHVRRIEEVTRGVTNRDEYEKRTREQARSEVDEEVG---VMLGHHRGDLRE 525 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 V + + + LSGM + D + I RP LR + I + + + +D + Sbjct: 526 NVLSNAHKGSGP--LDLSGMTAVSIND-GVIIHRPLLRLEKTVIFDYAHTFGVPYFKDTT 582 Query: 194 NTDDRFERVRVRRFVRDIDLHALYL-KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 R ++R + + M +L V+ ++ ++ L + + Sbjct: 583 PHWS--TRGKLRNHLMPLLEEIYGEGSMNNLSNLAVESDDCRELVNTSTLKPFLDGLTLY 640 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 I + L + ++ V L + S K +GRV + Sbjct: 641 PMGIRFKTACWKRNGLFFWKFVL--------RETLHSVGLGMFSDKSVASFLGRVQAETI 692 Query: 313 ANFLWITR 320 R Sbjct: 693 REGWLQCR 700 >gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1] Length = 742 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 20/190 (10%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFS- 54 F +++V RF P I++AVSGG DSM L + + K+ Sbjct: 84 FKDAVDAVCRPRFPTARFARPQRIILAVSGGVDSMALAFLVSKFIRMFRGSKVADNPVHG 143 Query: 55 --AISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103 A+ VDH LR+ + E V +L I +V ++WK+ + + AR Sbjct: 144 AMAVVVDHKLRDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLAR 203 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161 RY + + + A + AH DDQ ETV MR + +G+ ++I YD+ Sbjct: 204 TYRYRALGRICEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGLRGIREANSIPECYDM 263 Query: 162 NLWISRPFLR 171 + L Sbjct: 264 HGVYKSGLLD 273 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVRVRRFVRDIDLHALYL 218 D + I RP L ++ + + ISW ED +NTD R +R VR+ +L Sbjct: 343 DGGVMIYRPLLEFDKDRLIATCEANGISWVEDETNTDPTLTTRNAIRYMVRNHELPKALQ 402 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 K + +++ Sbjct: 403 KPAILSLAERCKQRTKEEEAEAKRYLVREAVVK 435 >gi|134299184|ref|YP_001112680.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051884|gb|ABO49855.1| PP-loop domain protein [Desulfotomaculum reducens MI-1] Length = 252 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 90/235 (38%), Gaps = 18/235 (7%) Query: 1 MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISV 58 M + ++ F +L+ P ++V VSGG DS LL L + A+ + Sbjct: 9 MLVQVTRAITHF--NLIEPGDKVVVGVSGGKDSNSLLYCLSLYHRRYLKKVPFELHAVHL 66 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISE 112 D L +++ + ++C RL I ++ + + +T + R + Sbjct: 67 DMGL----GADLQPMKELCQRLAIPLTLKHTDIGTILFDIRKETNPCSLCANLRRGALHS 122 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + + AH DD +ET +M + K + T L +L + RPF+ Sbjct: 123 AALELGFNKVALAHHLDDVMETFFMSLLFNGNMK----TFSPKTYLDRTDLTLIRPFVYV 178 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +++ L NI +P + + +R ++ + + ++ K L Sbjct: 179 TENQVKALLPLENIPVIHNPCPANKQTKREEIKNLINQLSEQYPDIRQKFLTSLH 233 >gi|313772802|gb|EFS38768.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL074PA1] Length = 311 Score = 129 bits (325), Expect = 8e-28, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 25/322 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L+ ++V VR + +V SGG DS+ L +A S R ++ + VDH L Sbjct: 11 LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121 ++ + + D+ R + V G AAAR A + Sbjct: 65 QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTA---RRAALLDAAGDEP 121 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ E V + R + + + P L RR Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + +DP N D RF R RVR + + ++ + + +L + Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVPGP------EVAASLARSATLLAGED 228 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299 V + + + + + + V A + + ++ V+ L Sbjct: 229 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 V + ++ R L++ R Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310 >gi|297621115|ref|YP_003709252.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU 86-1044] gi|297376416|gb|ADI38246.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU 86-1044] Length = 244 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 6/168 (3%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +I VA+SGG DS+ LL L ++ S + F +A+ V A ++ Y+S +C Sbjct: 31 ADQNIAVALSGGKDSLTLLFMLAAI-SGKGFPDFHLAAVHVTGEFSCGAGVDLPYLSAIC 89 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 S+L I VV N K +T + R L+ E A+ + A I H DD +T+ M Sbjct: 90 SKLNIPF-VVKESNQKLETLECYSCSRERRKLLFEAAEQLGAKTIAFGHHRDDNAQTILM 148 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 KG + + D I RP E+IR F Q+ Sbjct: 149 NML----HKGEFCGNLPKLHMIDYGKTIIRPLTYVSEEEIRRFAEQQG 192 >gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] gi|145214489|gb|ABP43893.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK] Length = 322 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 117/322 (36%), Gaps = 27/322 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F R+ +P VA+SGG DS+ L ++ +A+ VDH L+ + Sbjct: 13 ALVDFARTHRFPPPWCVALSGGPDSLALTAVAATLHPT--------TALIVDHRLQPGSA 64 Query: 68 DEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D + L +A V+ P G AAAR ARY + + + ++ H Sbjct: 65 DVAAAAREQALALGCVAAQVLPVDVGSPG-GPEAAARTARYRALDDAR---DGKPVLLGH 120 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + YD L RP L RR+ + + Sbjct: 121 TLDDQAETVLLGLGRGSGPRS-----IAGMRPYD--LPWGRPLLGVRRDTTHRACAELGL 173 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 + +DP N D R+ RVR+R V + L + + ++ + Sbjct: 174 NPWQDPHNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAV 233 Query: 247 R-SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSGK---R 299 + L ++ + L +R G + + + G Sbjct: 234 APGDADLDVTALADLPTALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAVP 293 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 G ++ R+ + R N L + R Sbjct: 294 GGLTRERLFVARNRNRLGMYRE 315 >gi|260587706|ref|ZP_05853619.1| PP-loop family protein [Blautia hansenii DSM 20583] gi|331084003|ref|ZP_08333110.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541971|gb|EEX22540.1| PP-loop family protein [Blautia hansenii DSM 20583] gi|330402365|gb|EGG81935.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium 6_1_63FAA] Length = 238 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 18/217 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDV 76 I + VSGG DS+ +L ALH ++ + AI+VD H + + Sbjct: 23 GDKIAIGVSGGKDSLTMLYALHGLMRFYP-KHFQLEAITVDLGHK-----DFCADKIQRL 76 Query: 77 CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C L I ++V + + + + R ++ AK + + AH DD Sbjct: 77 CDSLEIPFTLVKTDIAPIIFEERKEQNPCSLCAKMRKGALNNAAKDLGCNKVAYAHHKDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + +G + T L ++L + RP L D+ F + + + Sbjct: 137 VVETMLLSLI----YEGRFHTFSPKTYLDRMDLTVIRPLLYVNEADVIGFKNKYQLDIEK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P D +R + ++ + K + F +R Sbjct: 193 SPCPVDGYTKRQYAKELLKTLTKENPGAKERMFTAIR 229 >gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] gi|118571484|gb|ABL06235.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99] Length = 323 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 27/274 (9%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L + +SGG DS+ L + +A+ VDH L+ + Sbjct: 17 FASTHLDATDRWSIGLSGGPDSLALTAVAARLRPT--------TALIVDHGLQPDSAAVS 68 Query: 71 RYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTAH 126 L + V+ + P R ARY + H ++ AH Sbjct: 69 ETARAQAVSLGCVTARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGP----VLLAH 124 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + + RP L RR + + Sbjct: 125 TLDDQAETVLLGLGRGSGARSIAGM-------RPHDPPWCRPLLGVRRGVTHDACRELGL 177 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 + +DP N+D RF R R+R V + L + A L+ + Sbjct: 178 TAWQDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEAL 237 Query: 247 -RSIIAISQD---ILNIDSTLLFYLLRVSAAICG 276 +++ D + + + ++R G Sbjct: 238 PTAVVDFGLDTSVLATLPDPVRRRVIRSWLLAGG 271 >gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] gi|118163708|gb|ABK64605.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104] Length = 320 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 23/260 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VA+SGG DS+ L + +A+ VDH L+ + + L Sbjct: 27 RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + G AAAR A ++ HT DDQ ETV + Sbjct: 79 GCVAAQVISVHVDGEGGPEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + + + RP L RR + + ++ +DP N+D RF Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFT 187 Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R R+R V + L + + + N + L + L + Sbjct: 188 RARLRAEVLPLLEEVLGGGVAEALARTATALREDNEVLDALAERALPAAQAGAGLQVAAL 247 Query: 257 LNIDSTLLFYLLRVSAAICG 276 +D+ + ++R G Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267 >gi|242399147|ref|YP_002994571.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] gi|242265540|gb|ACS90222.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] Length = 331 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 30/241 (12%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62 V+ VR + I V VSGG DS+ LL LH + F + AI++D + Sbjct: 43 KVKQTVRKYGLIKRGDRIAVGVSGGKDSVVLLHILHKLSQKFPF---EIIAITIDEGIEG 99 Query: 63 -RETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAARE 104 R + V +L I H + S+K + + G + Sbjct: 100 YRPES---VEIAKRNAKKLGIEHKIYSFKEYIGFSLDETVSIMGSFEKRERVGACSYCGV 156 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R LI+ A+ + A + H DD+++ M R + +G +G ++++ + Sbjct: 157 WRRWLINYAAQDLEADKLAVGHNLDDEVQMFLMNVMRGDVAR-LGRTGPYYEVIHEGLVP 215 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 +P ++I + + NI R +R ++ +++ K + + Sbjct: 216 RIKPLREVPEKEIVLYAILNNIEVDFSECPYAVEAFRAEIRDWINEMEEKHPGTKYQILR 275 Query: 225 D 225 Sbjct: 276 S 276 >gi|154483514|ref|ZP_02025962.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC 27560] gi|149735424|gb|EDM51310.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC 27560] Length = 234 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 18/219 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDV 76 I V +SGG DS+ LL AL+ + K AI+VD +++ +K + Sbjct: 23 GDKIAVGISGGKDSLTLLYALNGLKRFYP-KKFDVVAITVDLDFGIQDFSK-----IEKY 76 Query: 77 CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C+ + I + VV + N + ++ + + R +++ AK+I I AH DD Sbjct: 77 CNDMDIEYYVVKTEIANVVFNERQESNPCSLCAKMRKGALNDFAKSIGCNKIAYAHHKDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ +G T L + L + RP + D+ F + + + Sbjct: 137 MIETMFLSLI----YEGRFHCFSPVTYLDKMELTVIRPLMYVPEADVIGFTNKYELPVAK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 D +R V+ V+ ++ K + F+ + K Sbjct: 193 SKCPVDGHTKREYVKNIVKQLNKENPGCKERFFRAVLNK 231 >gi|220917561|ref|YP_002492865.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955415|gb|ACL65799.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 450 Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 137/397 (34%), Gaps = 21/397 (5%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +E+ R R L PA +LVA+SGG+DS + + + A+ +DH LR Sbjct: 14 LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRA 69 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ E C+RL + + A AR RYA + E A A+ I T Sbjct: 70 GSEPEAASARAACARLGVPLEERRLAVGA--GNVQAEARRVRYAALREAAARAGASRIAT 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DQ ETV +R R +G+ + + RP + RE+ ++L Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGPVIRPLIDRTREEGNAYLRAM 180 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 + W +DP+N + R R+R + + A + + + Sbjct: 181 GLGWADDPTNAVPGYARNRLRLELWPLLRAAAPAADRALARAADLARED-ERALDRRARA 239 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303 A+ L + + + G + + V+ L+ G+ G V+ Sbjct: 240 VAGGGTAVDVAALRGEPLAVRRRVVRRLWRAATGSGRALEAQHVAAVLALLRRGRPGEVA 299 Query: 304 I-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362 + G R L + +P + GRY L D+ +++G + Sbjct: 300 LPGGRRARCRYGRLELAGPAAPVPVVAPVEVPGP---GRYALPAL-DAWVEVGAARPAEV 355 Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399 P + G K R + + Sbjct: 356 PWPLTLRTRRPGDRFRPEGGPGGTKLKRWLIDRKVPR 392 >gi|240275421|gb|EER38935.1| PP-loop family protein [Ajellomyces capsulatus H143] Length = 688 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH R + DE V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98 Query: 79 RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ + S + AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155 TV R R + GL G+ Sbjct: 159 TVLSRLTRGQ-RQATGLKGVAR 179 Score = 52.2 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210 + + +++ RPF + + S L+ I + D +N D R +R + R Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + ++ ++ Q + ++ N + Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338 >gi|325091259|gb|EGC44569.1| PP-loop family protein [Ajellomyces capsulatus H88] Length = 688 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG+DSM L ++S+R ++ VDH R + DE V+ Sbjct: 39 PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98 Query: 79 RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+++ + S + AR+ RY ++ + K N + H DD +E Sbjct: 99 ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155 TV R R + GL G+ Sbjct: 159 TVLSRLTRGQ-RQATGLKGVAR 179 Score = 52.2 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210 + + +++ RPF + + S L+ I + D +N D R +R + R Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + ++ ++ Q + ++ N + Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338 >gi|94502298|ref|ZP_01308777.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451150|gb|EAT14096.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 153 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 12/148 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I +F++++ I V+VS G DSM LL L + I + Sbjct: 7 FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55 Query: 62 LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 LR + + ++ + C + +I ++ K + AR+ RY Sbjct: 56 LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGM 148 I H DD +ET ++ R KG+ Sbjct: 116 YIALGHHLDDSIETFFINLIRGTGIKGL 143 >gi|116329484|ref|YP_799204.1| PP family ATPase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329912|ref|YP_799630.1| PP family ATPase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282315|sp|Q04W48|TILS_LEPBJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|122282736|sp|Q04XC4|TILS_LEPBL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|116122228|gb|ABJ80271.1| ATPase of the PP-loop superfamily [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123601|gb|ABJ74872.1| ATPase of the PP-loop superfamily [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 425 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 105/291 (36%), Gaps = 31/291 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRY 72 L PA +++ SGG DS LL + +++ +DH +R E K + Y Sbjct: 28 LSRPA--VLSYSGGKDSSLLLHFYFWLWAEKKIPVPCIY--HLDHSIRFNLEQEKKILDY 83 Query: 73 VS------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ + I + K L R RY + + + I+T H Sbjct: 84 TESTFPFPNLFKKKNIP-----ALSQKLGKTLEETGRAFRYKDLEKISNQYEG-YIVTGH 137 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 D LETV++ R + G + + RP ++I++ + Sbjct: 138 HSTDYLETVFLNLIRGGGWNSLRTLGWYEKNRF-------RPLFAFTEDEIKTISQSESW 190 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ED SN + + R R+R ++ + L + +++ +L+ + + Sbjct: 191 PIFEDESNQSNEYLRNRIRNYILPLLLQEGADPDRIYKNFHRMEKPTSKILLKEVSSHKT 250 Query: 247 RSIIAISQDILN--IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 S + I +LN + F++ R ++ + + +M LK Sbjct: 251 PSFLKIDVWVLNDLSERERKFFIDRYLRSL---NLHPTTRNFFQDLMDCLK 298 >gi|67515665|ref|XP_657718.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4] gi|40746136|gb|EAA65292.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4] gi|259489693|tpe|CBF90174.1| TPA: PP-loop family protein (AFU_orthologue; AFUA_5G11880) [Aspergillus nidulans FGSC A4] Length = 609 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 64/245 (26%), Gaps = 65/245 (26%) Query: 33 MGLLIALHSVLSDRSFG---------------------KIKFSAISVDHCLRETAKDEVR 71 M L R + A VDH R + DE Sbjct: 1 MALAYLCRQWEVRRQKQKWQQQQHHIPGLTNSNTSSKDEPSVIAFVVDHKARPESTDEAN 60 Query: 72 YVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 V+ L I ++ + + AR R+ + + + ++ H DD Sbjct: 61 TVATWLRELGITTEILPLDWTGIDHSAFETQARRLRFQALGKACRDRGIDALLLGHHQDD 120 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------------------ 160 +ET R +G GL+G+ Sbjct: 121 NVETTLWRL--SAGARGAGLTGISPVARIPECHGLYGVAASGSAVFARDYWQDQKHEIEQ 178 Query: 161 ----------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVR 209 + I RP L + + + + I + DP+N D R +R + Sbjct: 179 TRRGELPVSTGGIIIHRPLLSFPKSRLLTTCHENGIPYVTDPTNFDPTLTPRNAIRSLLA 238 Query: 210 DIDLH 214 L Sbjct: 239 SNSLP 243 >gi|327355825|gb|EGE84682.1| PP-loop family protein [Ajellomyces dermatitidis ATCC 18188] Length = 688 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155 TV R R + GL G+ Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215 + + +++ RP + + S LQ NI + D +N D R VR + + L Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305 Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 + + + ++++ + +L + + L ID + + Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363 Query: 275 CGGQISLPGYRSMERVMLFL 294 G ++R++ + Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383 >gi|239607883|gb|EEQ84870.1| PP-loop family protein [Ajellomyces dermatitidis ER-3] Length = 688 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155 TV R R + GL G+ Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215 + + +++ RP + + S LQ NI + D +N D R VR + + L Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305 Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 + + + ++++ + +L + + L ID + + Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363 Query: 275 CGGQISLPGYRSMERVMLFL 294 G ++R++ + Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383 >gi|289706997|ref|ZP_06503332.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58] gi|289556322|gb|EFD49678.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58] Length = 392 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 6/192 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA+SGG+DS+ L +A ++ R ++ A VDH L+ + +DV L Sbjct: 69 LVALSGGADSLALAVACAVLVGTRDGARLGPIGAAVVDHGLQSGSDAVAAAAADVARILG 128 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLETVYMR 138 + +V + ++ G A AR AR ++ A+ +++TAHT DDQ E V + Sbjct: 129 LAPVTVTRVEVARTGDGPEADARRARRVALAAAARDARPGGAVVLTAHTADDQAEQVLLG 188 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198 R + L+G+ + RP L R D + ++W EDP N D Sbjct: 189 LARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLARADTEAICRWAGLTWFEDPHNRDPA 246 Query: 199 FERVRVRRFVRD 210 R RVR V Sbjct: 247 LLRSRVRTRVLP 258 >gi|289642580|ref|ZP_06474722.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca glomerata] gi|289507575|gb|EFD28532.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca glomerata] Length = 620 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR + L + +LVA SGG+DS+ L AL + R+ ++ ++VDH E + Sbjct: 24 AVRRSIADLAPGSLVLVACSGGADSLALAAALAFIAPRRA---LRAGLLTVDHGWYEGSA 80 Query: 68 DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + V+ L V+ + + + A R A + + A + A+ ++ H Sbjct: 81 AQAATVAAHGRALGFDPVEVLPAHSPRSEGAAREARRRA----LLDAAGQLRASALLLGH 136 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV +R R + + L+ I RP L RR R L + Sbjct: 137 TLDDQAETVLLRLARGSGTRSLAGM-------PRLDGVIRRPLLDVRRSATRDACLAEGL 189 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 + +DP+N D+ F R RVR V + + + + + A Sbjct: 190 TPWDDPTNADEAFARARVRHRVLPVLEETIGPGIAEALARTADLLRA 236 >gi|261198252|ref|XP_002625528.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081] gi|239595491|gb|EEQ78072.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081] Length = 688 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P+ I +AVSGG DSM L ++S+R +K VDH RE + +E V+D Sbjct: 39 PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98 Query: 79 RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L S+ +SW + AR+ RY ++ + + N+ + H DD +E Sbjct: 99 DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158 Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155 TV R R + GL G+ Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215 + + +++ RP + + S LQ NI + D +N D R VR + + L Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305 Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274 + + + ++++ + +L + + L ID + + Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363 Query: 275 CGGQISLPGYRSMERVMLFL 294 G ++R++ + Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383 >gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 23/260 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VA+SGG DS+ L + +A+ VDH L+ + + L Sbjct: 27 RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + G AAAR A ++ HT DDQ ETV + Sbjct: 79 GCVAAQVISVHVDGEGGPEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + + + RP L RR + + ++ +DP N+D RF Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFT 187 Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R R+R V + L + + + N + L + L + Sbjct: 188 RARLRAEVLPLLEEVLGGGVAEALARTATALREDNELLDALAERALPAARAGAGLQVAAL 247 Query: 257 LNIDSTLLFYLLRVSAAICG 276 +D+ + ++R G Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267 >gi|269216709|ref|ZP_06160563.1| cell cycle protein [Slackia exigua ATCC 700122] gi|269129854|gb|EEZ60937.1| cell cycle protein [Slackia exigua ATCC 700122] Length = 369 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 59/270 (21%), Positives = 97/270 (35%), Gaps = 30/270 (11%) Query: 4 SPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 IE V + RSL +++ VSGGSDS L + + + G I + V+H Sbjct: 13 RTIERVEALIAERSLASVDNPVVLMVSGGSDSTALAYIGADLRNRGALGFISM--LHVNH 70 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYAL------- 109 LR E + + +V + L I + + + AR RYA Sbjct: 71 KLRGEASDADAAFVESLAKALDIPLFACEIDMPALMREGGNMESVARRERYAAARDAVES 130 Query: 110 -ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 +A ++ TAHT DD+ E YMRS G+ + + + RP Sbjct: 131 TCRHLGAPADAGVVFTAHTADDRAENFYMRSIVGTGPGGLRAMKHAS---FVQGVDVRRP 187 Query: 169 FLRCRREDIRSFLL----------QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218 L R+D+RS++ W ED +N D R VR + Sbjct: 188 LLELSRDDLRSYIESLPTDRVATDAAGARWREDATNADTDRFRAFVRHEIVARAKDRNPR 247 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 ++ + + +L + + +R Sbjct: 248 LLETLTRTMNLIADEDDLLEARANEILLRE 277 >gi|295688126|ref|YP_003591819.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756] gi|295430029|gb|ADG09201.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756] Length = 408 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 143/390 (36%), Gaps = 36/390 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 A + V SGG DS+ LL A + A+ VDH L+ + + Sbjct: 21 APLAVGFSGGGDSLFLLKAALDWARPSGRPVL---ALVVDHRLQADSARWTAQAVEKARA 77 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 L ++W KP GL AAAR AR+AL++E A+ A +++ HT D E+ MR+ Sbjct: 78 LGAEARALAWTGPKPAAGLPAAARRARHALLAEAAREAGAKVLLLGHTASDLAESAAMRA 137 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 + S ++++ RP L R +IR+ L +W EDP+N D R Sbjct: 138 EGSTVPDPRAWSP-SPVWPEGRDVFLLRPLLFLTRGEIRAALAAEGQTWLEDPANVDLR- 195 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILN 258 + ++ P+ + +I + + Sbjct: 196 ------------------------YARARARASGAEIVAPEPDVERRPPLFSIDEAGAVR 231 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318 + + L + G P +ER++ L+SG+ ++ I+ L I Sbjct: 232 LPRDIAAAHLAAALLCAAGTERPPRGERLERLLQRLRSGEGFTATLSGARIEAGEMAL-I 290 Query: 319 TR-----AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373 R A L L L P ET VWDGR++ + L + + + P ++ Sbjct: 291 CRDAGETARGGLAPLSLAPGETGVWDGRWEITAGVEPLTVVALKGRASSLSPDQRARLVT 350 Query: 374 QRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403 A S + AP S + D Sbjct: 351 LPAAVRPSSPLILRQGAAPCSPVLDGRDFA 380 >gi|167746732|ref|ZP_02418859.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662] gi|167653692|gb|EDR97821.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662] Length = 244 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 17/227 (7%) Query: 9 VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR V + + I V +SGG DS+ +L AL + K + I+VD Sbjct: 10 VRRAVDDYQMIQEGDKIAVGISGGKDSLTMLYALAHLRIFYP-NKFEIHGITVDLGF--- 65 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINA 119 ++ V +C L++ ++VV + + + +T + + R ++E K + Sbjct: 66 GNFDITQVEKLCEELKVPYTVVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGC 125 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + AH DD +ET M +G T L ++L + RP + D+ Sbjct: 126 NKVAYAHHKDDLVETFLMSML----FEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIG 181 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 F + N+ + P D +R + ++ +D K F+ + Sbjct: 182 FKNKMNLPVEKSPCPMDGYTKRQYAKETLKKLDEDHPGSKDHMFRAM 228 >gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957] gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957] Length = 236 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 7/190 (3%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 V VSGG S+ L + + A DH LR + E + + I Sbjct: 41 AVGVSGGPHSLALALLARDFARPLGGRVLALVA---DHGLRAESAAEAEWTRRTLAAQGI 97 Query: 83 AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142 + V+ + + AR+AR A + ++ DQ ETV R+ R Sbjct: 98 SARVLRLDLP-GGSAVQERARQARLAALLGACAAEGLPFLLLGQHAGDQAETVLFRALRG 156 Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 GLSG+ + I RP L + + L R +S DPSN D RF RV Sbjct: 157 SGA--TGLSGIAPRRAAAEAV-ILRPLLATPPIRLEALLAARGLSPLRDPSNADPRFARV 213 Query: 203 RVRRFVRDID 212 R+R+ + D D Sbjct: 214 RLRQALADAD 223 >gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] gi|254789041|sp|C1BA63|TILS_RHOOB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|226242218|dbj|BAH52566.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4] Length = 325 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 64/281 (22%), Positives = 102/281 (36%), Gaps = 23/281 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +VR ++ + + VA+SGG ++ + + A+ VDH L Sbjct: 10 LEVRHAVRHWIAAHAPDGDVAVALSGG-------ADSLALTAAAAVEARSAVALVVDHRL 62 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + D + L A + V + GL AAAR+ARY + + Sbjct: 63 QRGSADVADGAAARARTLGCASAEVLPVDVTGSGGLEAAARQARYEALD---AGRGTRPV 119 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV + R G + GM + RP L RR R Sbjct: 120 LLGHTLDDQAETVLLGLSRGSG--GRSIWGMS-----PYDSPWGRPLLGVRRAVTRQACT 172 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAML 237 + + EDP N+ F RVR+R V + L + + LR + A+ Sbjct: 173 ELGLDPHEDPHNSSPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAVA 232 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 V + I + L+ + +LR G + Sbjct: 233 ADAEAKVVVDGEIDAALLALSAPP-VRRRVLRSWLLAAGAR 272 >gi|145596819|ref|YP_001161116.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440] gi|189035971|sp|A4XCT1|TILS_SALTO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|145306156|gb|ABP56738.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440] Length = 333 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 18/324 (5%) Query: 5 PIESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 P+ ++R +R L P +LVA SGG+ L + ++VDH Sbjct: 7 PVAAIRRAIRHALIELPDPGPVLVACSGGA---DSLALAAATAFVAPRLGRSAGLVTVDH 63 Query: 61 CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 L+E + V+D + VV S G AAAR+ARY ++E A + A Sbjct: 64 GLQEGSAQRAAAVADWARATGLAPVEVVRVDVSGRPGGPEAAARQARYRALTEVAGGLGA 123 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++T HT DDQ ETV + R +G L+GM L + RP L RE R+ Sbjct: 124 AALLTGHTRDDQAETVLLALARGAGPRG--LAGMPARRWLGAAL-LLRPLLEVSREQTRA 180 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + DP N D + R RVR V + AL + ++ + Sbjct: 181 ACTALGLDPWVDPHNADPAYARARVRAEVLPALVRALGPAVVDNLARTARLVAVDTAALD 240 Query: 240 KYLTVHMRSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + + + + + + + +L A G + + +R + + + Sbjct: 241 EQASTALDGVRHPDGGLSVGGLAALVPAVRGRVLHAWARELGARPAALSHRHVGALEALV 300 Query: 295 KS--GKRGCVSIGRVVIDRRANFL 316 G+ G + + RRA L Sbjct: 301 TGWRGQGAAHLPGGLRVLRRAGRL 324 >gi|239623968|ref|ZP_04666999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521999|gb|EEQ61865.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 241 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ + R + K + A++VD L E V ++C Sbjct: 23 GDRIAVGVSGGKDSLA--LLYALHHLQRFYPRKYELCAVTVDLGL-GNMDLEP--VRELC 77 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++V+ + K ++ + + R ++E K + I AH DD Sbjct: 78 GEFGVPYTVIPTEIGKVLFDIRKESNPCSLCAKMRKGALNEKVKELGCNKIAYAHHRDDV 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ M +G S T L ++L + RPFL DI F + + C++ Sbjct: 138 IETMLMSLF----YEGRFYSFSPYTYLDRMDLTVIRPFLFVTEADIVGFKNKYQLPVCKN 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 P D +R ++ ++++ +LK F + Sbjct: 194 PCPMDGYTKRQYIKDLIKELQKDNPHLKDCMFHAI 228 >gi|218132480|ref|ZP_03461284.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC 43243] gi|217992590|gb|EEC58592.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC 43243] Length = 247 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 18/217 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSD 75 I V +SGG DS+ LL ALH + + A++V+ + + + + +S Sbjct: 22 SGDKIAVGISGGKDSLTLLYALHGLRRFYP-NNFEIEAVTVNAGI-----EGMDFSPISR 75 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + ++V+ N + ++ A + R ++ A + I AH D Sbjct: 76 LCDELDVNYTVIDTDIYDIVYNIRRESNPCALCAKLRKGAFNKKAAELGCNKIAYAHHKD 135 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET M +G + T L L + RP + D+ F + N+ Sbjct: 136 DVIETFMMSLL----LEGRVHTFSPVTYLERSGLTLIRPLIYVNEADVIGFRNKYNLPVV 191 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ++ D R + ++ ++ + F + Sbjct: 192 KNLCPADGETRREYAKNLIKSLNKDLPGTHDRIFTAI 228 >gi|309810838|ref|ZP_07704639.1| tRNA(Ile)-lysidine synthetase [Dermacoccus sp. Ellin185] gi|308435144|gb|EFP58975.1| tRNA(Ile)-lysidine synthetase [Dermacoccus sp. Ellin185] Length = 353 Score = 126 bits (318), Expect = 5e-27, Method: Composition-based stats. Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 14/247 (5%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 R F ++ VSGG+DSM ++ + + + VDH L+ + D Sbjct: 21 RTFSSDAAGERRVVAGVSGGADSM---ALAAALAFEAPKQGVAVDVVIVDHGLQAGSADV 77 Query: 70 VRYVSDVC-SRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 C +L A +V ++ GL AAAR AR + + A + A + Sbjct: 78 AERARRACVDQLGFADDDVRTVAVIVDADAPEGLEAAARAARRRALFDVADAVGAARAVL 137 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL----RCRREDIRSF 180 AHT DDQ E V + R + L+GM L ++ P + RR D Sbjct: 138 AHTADDQAEQVLLGLMRGSGTR--ALAGMRADRARLLRPFLLGPEIVPGGPVRRVDTELA 195 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + DP N D F RVR R + ++ +++ A L+ + Sbjct: 196 CEALGLEPWHDPHNDDPAFSRVRARHTLAALERELAAPTLRRSLFRTAAAAGRDADLLDR 255 Query: 241 YLTVHMR 247 + Sbjct: 256 LADEALA 262 >gi|317471540|ref|ZP_07930890.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA] gi|316900988|gb|EFV22952.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA] Length = 244 Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 17/227 (7%) Query: 9 VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR V + + I V +SGG DS+ +L AL + K + I+VD Sbjct: 10 VRRAVDDYQMIQEGDKIAVGISGGKDSLTMLYALAQLRIFYP-NKFEIHGITVDLGF--- 65 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINA 119 ++ V +C L++ +++V + + + +T + + R ++E K + Sbjct: 66 GNFDISQVEKLCEELKVPYTIVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGC 125 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + AH DD +ET M +G T L ++L + RP + D+ Sbjct: 126 NKVAYAHHKDDLVETFLMSML----FEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIG 181 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 F + N+ + P D +R + ++ +D K F+ + Sbjct: 182 FKNKMNLPVEKSPCPMDGYTKRQYAKETLKKLDEDHPGSKDHMFRAM 228 >gi|57641756|ref|YP_184234.1| PP family ATPase [Thermococcus kodakarensis KOD1] gi|57160080|dbj|BAD86010.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1] Length = 323 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 28/239 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63 E+V+ + R + I V VSGG DS+ L+ L + R + AI++D + R Sbjct: 36 ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 91 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------------SKPQTGLMAAAREAR 106 + V +L I H + S+K + G + R Sbjct: 92 PPS---VEIAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWR 148 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 L++ A + A + H DD+++ M R + +G +G ++ + Sbjct: 149 RWLLNYAAMDVGADKLAVGHNLDDEVQMFLMNILRGDIAR-LGRTGPYYEEIHPELVPRI 207 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 208 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWINEMEEKHPGTKYQILRS 266 >gi|330444537|ref|YP_004377523.1| PP-loop type ATPase [Chlamydophila pecorum E58] gi|328807647|gb|AEB41820.1| PP-loop type ATPase [Chlamydophila pecorum E58] Length = 247 Score = 126 bits (317), Expect = 7e-27, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S I + L I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ Sbjct: 18 SLIRKALYTYSMLENHRKIIVALSGGKDSLSLLLMLKAI-SGRGFPELDLHAVNISGKYS 76 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A+ Y+ +C RL+I + + P+T + +AR L+ + AK I AT I Sbjct: 77 CGAEVNTHYLIKICDRLQIPFTSL-VSPYAPETPECYSCSQARRRLLFQAAKEIGATAIA 135 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + I+ F + Sbjct: 136 FGHHRDDLVQTTLMNLL--HKAEFSGMLPVLDMVHF--GITILRPLIFTPESLIKKFAKE 191 Query: 184 RN 185 Sbjct: 192 HG 193 >gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobacterium kansasii ATCC 12478] Length = 353 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 83/260 (31%), Gaps = 23/260 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 V +SGG DS+ L + +A+ VDH L+ + L Sbjct: 57 RWCVGLSGGPDSLALTAVAAQLRPT--------TALIVDHGLQLGSAAVAETARAQAISL 108 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + Q G A A + ++ HT DDQ ETV + Sbjct: 109 G----CDDAQVICVQVGTAGGLEAAARAARYAALQAHRDGPVLLGHTLDDQAETVLLGLG 164 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + + YD RP L RR+ ++ + ++ +DP NTD RF Sbjct: 165 RGSGPRS-----IAGMRPYDP--PWCRPLLGVRRDVTQAACRELGLTAWQDPHNTDRRFT 217 Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK----YLTVHMRSIIAISQDI 256 R R+R+ V + L + + LI LT + + Sbjct: 218 RTRLRQEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAARALTAAAAGSGLDTAAL 277 Query: 257 LNIDSTLLFYLLRVSAAICG 276 + + ++R G Sbjct: 278 TALPGPVRRRVIRRWLLAGG 297 >gi|46446494|ref|YP_007859.1| hypothetical protein pc0860 [Candidatus Protochlamydia amoebophila UWE25] gi|46400135|emb|CAF23584.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 246 Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 24/219 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 + I VA+SGG DS+ LL L ++ S R F ++ AI V A Y+ +C Sbjct: 35 SKIAVALSGGKDSLTLLYLLKAI-SGRGFPNLEIHAIHVSGEFSCGAGVNEDYLRAICQE 93 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 + + + K + + R L+ E AK++ T I H DD +TV M Sbjct: 94 IGVQLTT-RISTQKLEKLECYSCSRERRRLLFEAAKSLGITTIAFGHHRDDHTQTVLMNL 152 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 G + + + + I RP + ++IR+F Q+ F Sbjct: 153 LHKAEFAG----NLPKIHMQEYGVTIIRPLIYIAEKNIRTFAQQQG-------------F 195 Query: 200 ERVRVR-----RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 R+ R +R L F R + A Sbjct: 196 ARIMCRCPVGQNSMRKQVDQLLIEIETLFPHARENIAKA 234 >gi|312194202|ref|YP_004014263.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c] gi|311225538|gb|ADP78393.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c] Length = 603 Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 140/396 (35%), Gaps = 53/396 (13%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR V L A +LVA SGG DS L + ++ ++VDH + Sbjct: 29 AVRHAVADLPPGALVLVACSGGPDS---LALAAATAFVAPRRALRAGLLTVDHGWDGASD 85 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 V LR+ + +S AAR+AR A ++ A+ + A ++ HT Sbjct: 86 QRAESVVAQGRALRLDPVELLVAHSARS---EGAARDARRAALAAAAERLGAAALLLGHT 142 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ETV +R R + +G D +L L R+E R+ + Sbjct: 143 LDDQAETVLLRLARGAGARSLGAMSPRDGLLRRPLL-------GLRKEQTRAACRAEGLD 195 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--- 244 EDP+N D F R RVR + L + + + A A + Sbjct: 196 VWEDPTNADAAFARARVRHALLPALEEQLGPGIAESLSRSADLLRADAEALDALTDDAYA 255 Query: 245 -------HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLF 293 + ++ + L ++ S L +LR +A G S +ME ++ Sbjct: 256 QATAGSPAGAGSVELAVEALGSLPSALRTRVLRRAALALGASASALRAEHVWAMEELVTR 315 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353 + G++ V RR + + + P ET S + Sbjct: 316 WR-GQQPVPLPSGVTARRRGDRI-----------SVAGPGETR-------------SGRR 350 Query: 354 IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389 A P+G P +R ++ P E G P+ Sbjct: 351 GTADGGDAASGPTGPRPS-PRRPDAARPDAEEGMPV 385 >gi|269796486|ref|YP_003315941.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542] gi|269098671|gb|ACZ23107.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542] Length = 344 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 107/279 (38%), Gaps = 30/279 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A +LVA SGG+DS+ L + + ++ A+ VDH ++ + + + C Sbjct: 27 PGALVLVACSGGADSLALA---ATTAFEAPRLGLRAGAVVVDHQVQTGSAEVAAEAAGRC 83 Query: 78 SRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + VV G AAAR ARYA + A A +++ HT DDQ ET Sbjct: 84 RDLGLGPVVVRTVDVPTGPGSGGPEAAARHARYAALEAAADAEGAEVVLLGHTADDQAET 143 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 V + R + L+GM D + RP L RR + + + + W DP+N Sbjct: 144 VLLGLARGSGAR--SLAGMRDAV-----GRWRRPLLGLRRTETEAVCAAQGLGWWVDPTN 196 Query: 195 TDD---RFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R RVR V + + AL + + + A L+ Sbjct: 197 AGTSPGAPLRSRVRASVLPVLDDVLGPGVVEALARTADQLDEDDTALGTLAADLLESARR 256 Query: 244 VHMRSII---AISQDILNID---STLLFYLLRVSAAICG 276 + A+ D+ ++ + LR++A G Sbjct: 257 AAGPADGDGRAVRLDVAAVEQAVPAVRRRCLRLAALAAG 295 >gi|282890463|ref|ZP_06298986.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499460|gb|EFB41756.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 247 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 24/235 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + F + + I +A+SGG DS+ LL L ++ S R F + A+ V Sbjct: 20 SMVRKALFEFQMVSDSPKIAIALSGGKDSLALLFLLKAI-SGRGFPPFELFAVHVHGAFS 78 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A + Y+ +C+RL I ++ ++ R L+ E AK++ AT I Sbjct: 79 CGAGVNLDYLRAICTRLEIPF-LMRESTQTLESLECYGCSRERRRLLFEAAKSVGATTIA 137 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD +T+ M K + + + + + I RP + ++I +F Q Sbjct: 138 FGHHRDDSAQTLLMNLL----HKAEFAANLPKLHMREYGVTIIRPLIYVAEKEISTFAEQ 193 Query: 184 RNISWCEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVKVNNA 233 F+R+ R +R L + F + R + A Sbjct: 194 HG-------------FKRITCRCPVGQNSMRRQVDQLLTQLEELFPNARENIAKA 235 >gi|118575266|ref|YP_875009.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A] gi|118193787|gb|ABK76705.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A] Length = 269 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 20/222 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V VSGG DS+ LL L + F + A+++D + + + V + C Sbjct: 4 RGDRVAVGVSGGKDSLVLLHILEQMSQKWGF---ELEAVTIDEGIPGYRDEALSIVEEYC 60 Query: 78 SRLRIAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 L +AH V ++K+ + + R + A ++ T Sbjct: 61 GSLGVAHRVYAYKDLFDMTLDEALNMRGENSQTSCSICGTLRRRAMDHAIHDTGADVLAT 120 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DD L+T + ++ + + +PF +I + Sbjct: 121 AHNLDDTLQTFLINMISGDTDRIAWMDPDTSSNELRK----IKPFCEIYESEIVFYAFAN 176 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 I + + D R +R F+ ++ K ++ + Sbjct: 177 KIPFQAESCPHMDEGIRTELRIFLNSLEESHSGAKNSLYRSV 218 >gi|223998234|ref|XP_002288790.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975898|gb|EED94226.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 613 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 107/330 (32%), Gaps = 58/330 (17%) Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSW----------KNSKPQTGLMAAAREARYALISEH 113 E++ + +V +C I SW K+ ++ AR R + Sbjct: 149 ESSDRDEGFVKALCQENGIPIHCYSWSDRNNTSANRKDDSSESFTQDVARTWRKQTLGRL 208 Query: 114 AKT--------------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--- 156 I+TAH DD ET+ ++ R L GM Sbjct: 209 LLDLVVTPNHYRGTDTSERWGAILTAHHRDDVDETILLKLLRGSHL--TNLWGMDARSDG 266 Query: 157 ----ILYDLN-----------LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 L+D + + ++P L R+ D+ +L ++I W ED SN ++++R Sbjct: 267 FDLLALHDNDTVSKSPASTFTGYFAKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKR 326 Query: 202 VRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 ++R V + AL + ++ ++ + KYL + M S Sbjct: 327 NKIRNEVMPLLKELAGGEDALQKRFSNLEEQSRAISQHLLNRAEKYL-LDMPSNSVFHLT 385 Query: 256 ILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV- 308 IL+ + L + Y M+R+ L + + +G Sbjct: 386 ILDSTILFDLEREEALHLWLTRVTDNELQISYEQMKRIRHQLNEYPERLQWTIDVGNSWR 445 Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVW 338 + R + L ++ + + W Sbjct: 446 VSRNGDILVVSNRHEDDNIQTTEKDNQIHW 475 >gi|291556343|emb|CBL33460.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium siraeum V10Sc8a] Length = 241 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 19/230 (8%) Query: 9 VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 +R V+ I V VSGG DS+ LL L + F +A+++D Sbjct: 8 IRKAVQDFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117 D V+ +C +L + S+V + + + + + R + + AK Sbjct: 67 PNNYD---AVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD +ET M +G T L ++ + RP + + Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 S + N+ + D R + + F+RD++ K++ F LR Sbjct: 180 LSACNRNNLEIVKSVCPADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|212224843|ref|YP_002308079.1| ATPase [Thermococcus onnurineus NA1] gi|212009800|gb|ACJ17182.1| ATPase [Thermococcus onnurineus NA1] Length = 323 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 84/244 (34%), Gaps = 31/244 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++ R + I V VSGG DS+ LL L + F + A+++D Sbjct: 34 FKETVKKYRLVEK----GERIAVGVSGGKDSVVLLHLLAKLQKKFPF---ELVAVTIDEG 86 Query: 62 L---RETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAA 101 + R + V +L I H + S+K + G + Sbjct: 87 IAGYRPPS---VEIARRNAEKLGIEHHIYSFKEYIGFTLDETVEIMGSFEKGERVGACSY 143 Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 R L++ AK + A + H DD+++ M R + +G +G ++ Sbjct: 144 CGVWRRWLLNHAAKEVEADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPE 202 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 + +P ++I + + I R +R ++ +++ K + Sbjct: 203 LVPRIKPLREIPEKEIILYAVLNEIEVDLSECPYAVEAFRAEIRDWINEMEEKHPGTKYQ 262 Query: 222 KFQD 225 + Sbjct: 263 ILRS 266 >gi|240102078|ref|YP_002958386.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3] gi|239909631|gb|ACS32522.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3] Length = 325 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 28/239 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63 E+V+ + R + I V VSGG DS+ L+ L + R + AI++D + R Sbjct: 38 ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 93 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAAREAR 106 + V +L I H + S+K + G + R Sbjct: 94 PKS---VEIAKRNARKLGIEHRIYSFKEYIGFTLDETVGIMGSFERGERVGACSYCGVWR 150 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 L++ AK + A + H DD+++ M R + +G +G ++ + Sbjct: 151 RWLLNYAAKDVGADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPELVPRI 209 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 210 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQILRS 268 >gi|172041383|ref|YP_001801097.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109] gi|171852687|emb|CAQ05663.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109] Length = 494 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 89/267 (33%), Gaps = 22/267 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + + + VSGG+DS+ L + + + F A+ VDH L+E + + + Sbjct: 102 LAEGPVYLGVSGGADSLALAYTAAGI-AKKDLPGASFRALVVDHQLQEGSAEVAATAAQN 160 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C + I V++ G A AR A ++ AHT D E + Sbjct: 161 CEEIGIPAQVLTIDVP---GGPGADEAAAREARYRALGAAAAGRPLLVAHTASDDAEGLL 217 Query: 137 MRSQRDYAE------------------KGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + R G +G + W+ RP L RED Sbjct: 218 LGLARGSGTGALAGLRPITTATHQRSDNGEQQAGNEHPAIAAGAGWLGRPLLDSTREDTE 277 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + + +S+ DP N RF R RVR+ + + L + ++ + + Sbjct: 278 ATCHRAGLSFWSDPHNASPRFRRSRVRQELLPLLEEILGPGVADSLTRTARLLREDSDYL 337 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLF 265 +IA + + + Sbjct: 338 EAAAHAEYTRLIAEAGSHGHAEGHEQA 364 >gi|155371675|ref|YP_001427209.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella virus 1] gi|155124995|gb|ABT16862.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella virus 1] Length = 504 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 23/277 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++ V ++ V P+ I +++SGG DSM L L + R+ + V++ R Sbjct: 190 VKEVETALKK-VSPSEITMSISGGVDSMTLFHILSGL---RNVYGYELRVAMVNYANRAC 245 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--------TGLMAAAREARYALISEHAKTI 117 A DE +V+D + ++ + T R RY + A+ Sbjct: 246 AYDEETFVADWVNWNGHVLNIRRIDEISRKPCVDMGMRTTYETFTRNVRYGVYKTIARD- 304 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD LE ++ K LSGM DT++ + RP L ++DI Sbjct: 305 --AYVAMGHNKDDVLENIFQNVA--METKYENLSGM-DTVVEQDGIKFFRPLLGVAKDDI 359 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAV 234 + NI + + + F R ++R + M K +D ++++A+ Sbjct: 360 VEYARSHNIPFLPNSTP--PHFMRGQIRNTIVPTMNAWNDRFIPGMFKLKDTVAELSDAM 417 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271 +L ++ ++ + + + + L+ Sbjct: 418 DVLTDGFVKSFEQNSALVEPKYVGMKTMFWRSALKKL 454 >gi|83772767|dbj|BAE62895.1| unnamed protein product [Aspergillus oryzae] Length = 586 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 67/247 (27%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--------------- 77 M L L I +A VDH RE + E VS Sbjct: 1 MALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVSQWLQDIGIYASPYTLAFN 59 Query: 78 ------SRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +L + ++ S K+ T AR R+ + + + ++ Sbjct: 60 TKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMG 119 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------------- 160 H DD +ET R KG GL+G+ + Sbjct: 120 HHQDDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSS 177 Query: 161 -----------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208 + I RP L + + + + NI + DP+N D R +R + Sbjct: 178 AQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLL 237 Query: 209 RDIDLHA 215 + L Sbjct: 238 AEDKLPK 244 >gi|226327027|ref|ZP_03802545.1| hypothetical protein PROPEN_00888 [Proteus penneri ATCC 35198] gi|225204245|gb|EEG86599.1| hypothetical protein PROPEN_00888 [Proteus penneri ATCC 35198] Length = 131 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84 SGG DS LL L + + ++ +AI + H L A D + + C + R+ Sbjct: 2 GFSGGVDSTVLLQGLVRLRDEFQLP-LELTAIYIHHGLNIKADDWLAHCKQCCQQWRVNF 60 Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + GL AREARY + + +++TA DDQ ET ++ Sbjct: 61 ISEKVNVDPKEGGLENGAREARYQAFRRYLQPQQ--VLVTAQHQDDQAETFFI 111 >gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] gi|315264560|gb|ADU01302.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1] Length = 322 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 27/322 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 ++ F R+ VA+SGG DS+ L ++ +A+ VDH L+ + Sbjct: 13 ALVDFARTHRVAPPWCVALSGGPDSLALTAVAATLHPT--------TALIVDHRLQPGSA 64 Query: 68 DEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D + L +A V+ P G AAAR ARY + + + ++ H Sbjct: 65 DVAAAAREQALALGCVAAQVLPVDVGSPG-GPEAAARTARYRALDDAR---DGKPVLLGH 120 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + YD L RP L RR+ + + Sbjct: 121 TLDDQAETVLLGLGRGSGPRS-----IAGMRPYD--LPWGRPLLGVRRDTTHRACAELGL 173 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 + +DP N D R+ RVR+R V + L + + ++ + Sbjct: 174 NPWQDPHNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAV 233 Query: 247 R-SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSGK---R 299 + L ++ + L +R G + + + G Sbjct: 234 APGDADLDVTALADLPAALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAVP 293 Query: 300 GCVSIGRVVIDRRANFLWITRA 321 G ++ R+ + R N L + R Sbjct: 294 GGLTRERLFVARNRNRLGMYRE 315 >gi|88607318|ref|YP_505641.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88607616|ref|YP_505613.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88598381|gb|ABD43851.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] gi|88598679|gb|ABD44149.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ] Length = 269 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 11/209 (5%) Query: 147 GMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204 G G+ G+ ++ I RP L R +I+ + +Q W EDPSN+D ++ R Sbjct: 3 GSGIDGLAGIRERSVIGDVTIIRPLLDFTRREIQEYAIQHQQPWIEDPSNSDPKYRRTFY 62 Query: 205 RRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-N 258 R F+ + I + L Q + + V + L + I D+ N Sbjct: 63 RNFINNCKHPEILISRLSSTALHMQRSLSCILHYVQNALDSCLEFTPFGYVVIKHDVFRN 122 Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVI-DRRANFL 316 + + L + G + P + + ++S ++ +I + + Sbjct: 123 LQDEIASRLFLLLIMTIGNKPLKPRFSKFSSALSKVRSTAGFASFTLHGCMILKTCDSNI 182 Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQF 344 + R V ++ P L+ E +WD R++ Sbjct: 183 IVAREVSSIVPKTYLHGETRLLWDSRFEL 211 >gi|167749764|ref|ZP_02421891.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702] gi|167657247|gb|EDS01377.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702] Length = 241 Score = 124 bits (312), Expect = 3e-26, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 19/230 (8%) Query: 9 VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 +R V+ I V VSGG DS+ LL L + F +A+++D Sbjct: 8 IRKAVQDFDLIQKGDKIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117 D V+ +C +L + S+V + + + + + R + + AK Sbjct: 67 PNNYD---AVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD +ET M +G T L ++ + RP + + Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 S + N+ + D R + + F+RD++ K++ F LR Sbjct: 180 LSACNRNNLEIVKSVCPADKTTSRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|169608297|ref|XP_001797568.1| hypothetical protein SNOG_07219 [Phaeosphaeria nodorum SN15] gi|160701613|gb|EAT85870.2| hypothetical protein SNOG_07219 [Phaeosphaeria nodorum SN15] Length = 626 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 36/255 (14%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIAHSVVSWKN 91 M L L++ + VDH +R + +E +V++ + + S+++ Sbjct: 1 MALAS-LYARAQKADASLPQGHGFIVDHKVRPESTEEAAWVAEQLRSKFGMKSSILTLTW 59 Query: 92 SKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 + AR RY + + + + +M AH DDQ ETV MR + Sbjct: 60 PENFDMSDFKRFETEARTRRYQALGQACRREDIRALMVAHHGDDQAETVLMRLANNRLRT 119 Query: 147 GM-------------GLSGMCDT--------------ILYDLNLWISRPFLRCRREDIRS 179 G+ G+ G+ + + + I RP L + + + Sbjct: 120 GLKGMQSVEWIPECEGIYGVHHSGDYQEPKVTNKIPFPIEQGGIQILRPLLAMEKSRLIA 179 Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + W ED SN R +R + +L L + L +++ V Sbjct: 180 TCQEHGTEWAEDKSNHLRTLTSRNAIRHIYKAHELPK-ALSIPSLVALSLRMQERVNKHQ 238 Query: 239 PKYLTVHMRSIIAIS 253 ++ + ++ + Sbjct: 239 AYARKLYDQCLMKLD 253 >gi|296273321|ref|YP_003655952.1| PP-loop domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097495|gb|ADG93445.1| PP-loop domain protein [Arcobacter nitrofigilis DSM 7299] Length = 250 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 17/181 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV SGG DS L+ AL+ + F +F A++V + + E V ++S C+ Sbjct: 25 GDRVLVGFSGGKDSTTLIHALNHIKKVTPF-DFEFKAVTVTYGMGEQ----VEFLSKHCA 79 Query: 79 RLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I H ++ S + + + + R + A+ + H DD Sbjct: 80 KHGIEHEIIDTEIFELSKEKIRKNSSFCSFFSRMRRGYLYSTAQEQGYNKLALGHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + A L M + L + RP + CR +R+F IS D Sbjct: 140 MESFFMNFLYNGA-----LRSMPPRYKAENGLEVIRPLIFCRERQLRAFAQTNEISVIGD 194 Query: 192 P 192 Sbjct: 195 E 195 >gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] gi|262087222|gb|ACY23190.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247] Length = 317 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 104/274 (37%), Gaps = 30/274 (10%) Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70 F L H+ V +SGG DS+ L A ++ +A+ VDH L+ + D Sbjct: 14 FAAEYLPDAEHVCVGLSGGPDSLALTAAAVR-------AGLRVTALVVDHGLQANSADVA 66 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L A ++ + + GL AAAR ARY+ + + + ++ HT DD Sbjct: 67 STAAATARALGAAAVILPVRVGRDG-GLEAAARAARYSALDAAR---DGSPVLLGHTMDD 122 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ETV + R + ++GM RP L RR + + ++ Sbjct: 123 QAETVLLGLARGSGAR--SIAGMRTWTPPWG-----RPLLGVRRTQTAAMCAELGLTPYA 175 Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 DP N D RF RVRVR V + + AL + ++ A L + Sbjct: 176 DPHNRDPRFTRVRVRTDVLPLLDDVLNGGVVEALARTAASLRADNDALDGLAADLGAGAV 235 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 I +++ + + ++R G Sbjct: 236 VDAGLEIAVLAE----APAAVRTRVIRRWLLDVG 265 >gi|299753124|ref|XP_001833078.2| tRNA(Ile)-lysidine synthetase [Coprinopsis cinerea okayama7#130] gi|298410154|gb|EAU88767.2| tRNA(Ile)-lysidine synthetase [Coprinopsis cinerea okayama7#130] Length = 466 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 62/340 (18%), Positives = 114/340 (33%), Gaps = 55/340 (16%) Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIM 123 + S+ ++L + H +P AR ARY L+ + + + + Sbjct: 2 ATHCSNFAAKLGLDHITSKILWGQPGFPPRPTESFERDARNARYDLLYKAMLSSGSNTLA 61 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----------------DLNLWISR 167 H DDQ+ET MR +G GM + + +W+ R Sbjct: 62 LGHHLDDQVETSLMRL--GKGSTLLGARGMRPIRRWGMSEVPKWDFGQRDLQGMRMWMIR 119 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD-------------IDL 213 P L+ ++ I + + + D +N R +R + + L Sbjct: 120 PLLQVGKDRILATCEANGLEYVTDKTNFQPDITIRNAIRHTLENNGDTSAVLEKRIKEQL 179 Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL---NIDSTLLFYLLR 269 H + + K +L + +++ + L + + I D L + + LL Sbjct: 180 HEIDEALSKNHELGLNLSSGLERARGAVLRISSLSGSIHAKVDKLIEQSCRPSPPGTLLL 239 Query: 270 VSAAICGGQISLPGYRSM-ERVMLFLKSGKRGCVSIGRV----VIDRRANFLWITRAVRN 324 +A+ I L +++ ERV+ ++ G + +DR N LW Sbjct: 240 SPSALQSETIDLLARKALVERVLRYVSPEPWGSLRAQSHSRSSQVDRIVNILWGPMNRNM 299 Query: 325 LPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364 P VW NL DS I P++ D+ Sbjct: 300 AP---FTAGSGVVW----TPVNL-DSSGDIKPRTGTGTDL 331 >gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] Length = 1313 Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 16/194 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V++SGG DSM L L + +D+ R + +E +V D R Sbjct: 863 IAVSLSGGVDSMVLAYILK-------HQGYDVVTLHIDYKNRPESTEEADFVDDWSVRHG 915 Query: 82 IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + + + P+ +R+ RY + + ++ H D E + Sbjct: 916 MKFERCTVDAIRRGVTPREQYEIESRKIRYGFYKKSGQKHGFPAVLLGHHHGDVQENIIT 975 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R + ++GM + + + I RP L + D+ F + + D + T Sbjct: 976 NLMRGANL--LSVNGMDKRGVVE-GVRIWRPMLPHNKVDVLDFAHTYGVPYFLDSTPTWS 1032 Query: 198 RFERVRVRRFVRDI 211 R ++R + + Sbjct: 1033 --TRGKLRNQLVPL 1044 >gi|18978130|ref|NP_579487.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus DSM 3638] gi|18893931|gb|AAL81882.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM 3638] Length = 319 Score = 124 bits (311), Expect = 4e-26, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 83/227 (36%), Gaps = 19/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + + VAVSGG DS+ L+ L + R + AI++D ++ V Sbjct: 42 RMIKRGEKVGVAVSGGKDSVVLMHILAKL---RKKFPFELVAITIDEGIKGYRDKSVEVA 98 Query: 74 SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTIN 118 L + H + +K+ + + G + R L+++ A+ + Sbjct: 99 RKNAELLGVEHHIYRFKDFIGFTLDETVEIMGPREERVGACSYCGVWRRWLLNKAAEELG 158 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + DD+++ M R + +G +G ++++ + +P ++I Sbjct: 159 VDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPRIKPLREVPEKEIV 217 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 + + NI R +R ++ +++ K + + Sbjct: 218 LYAVLNNIEVDLSECPYATEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264 >gi|331270424|ref|YP_004396916.1| hypothetical protein CbC4_2254 [Clostridium botulinum BKT015925] gi|329126974|gb|AEB76919.1| conserved hypothetical protein [Clostridium botulinum BKT015925] Length = 239 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L++ S AI++D A + + Sbjct: 18 IQAGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFNLIAITLD----PGAGADFSEMIH 72 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + + + + + ++ + R +++HAK + I H + Sbjct: 73 ICKELNVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G + + DT L +L I RP + ++I++F+ NI Sbjct: 133 DAIETLLMSMF----YEGRINTFLPDTYLSRADLHIIRPMVYIDEQNIKTFIKNSNIPIV 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 E+P + +R ++ ++ LK L Sbjct: 189 ENPCPANGFTKREYMKNLTYSLEKDIPGLKNNLLNSLS 226 >gi|282164695|ref|YP_003357080.1| hypothetical protein MCP_2025 [Methanocella paludicola SANAE] gi|282157009|dbj|BAI62097.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 310 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 24/221 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ R +V H+ VA+SGG DS L L S R IKF+AI++D + Sbjct: 32 RKIKKRMRQDRMVVPGDHVAVAMSGGKDSAVTLSILFETFSMR--PDIKFTAITIDEGID 89 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISE 112 + V ++C +L + H VVS++ + + R L++ Sbjct: 90 GYRNFSIPRVKELCDKLGVPHIVVSFQEEVGCTLDEMLTHERKEASCTYCGVFRRTLLNT 149 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ I A + T H DD +TV + E+ L+ + + + + +P + Sbjct: 150 TARNIGANKLATGHNLDDDAQTVLLNVMNGDTER---LARLRPSRPQEGLIPRIKPLMDV 206 Query: 173 RREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDI 211 ++ + + + + E P + R +R ++D+ Sbjct: 207 PEREVALYAFLKGLPFHMGECP------YARESLRGEIKDM 241 >gi|255527643|ref|ZP_05394503.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|255508656|gb|EET85036.1| PP-loop domain protein [Clostridium carboxidivorans P7] Length = 127 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + ++++ + R ++VAVSGG DSM LL L+S+ R I+ A V+H Sbjct: 1 MIETVLKTINRY-RMFNKGDKVIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNH 56 Query: 61 CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115 CLR + + YV + C +L I S +K +A R ARY ++ K Sbjct: 57 CLRGNESDKDEEYVKEFCEKLNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKK 116 Query: 116 TINA 119 I Sbjct: 117 EIKC 120 >gi|254173299|ref|ZP_04879972.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] gi|214032708|gb|EEB73537.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] Length = 325 Score = 123 bits (310), Expect = 5e-26, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 28/239 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63 E+V+ + R + I V VSGG DS+ L+ L + R + AI++D + R Sbjct: 38 ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 93 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------------SKPQTGLMAAAREAR 106 + V +L I H + S+K + G + R Sbjct: 94 PPS---VEIAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWR 150 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 L++ AK + A + H DD+++ M R + +G +G ++ + Sbjct: 151 RWLLNYAAKDVGADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPELVPRI 209 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 210 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQILRS 268 >gi|14520709|ref|NP_126184.1| hypothetical protein PAB2029 [Pyrococcus abyssi GE5] gi|5457925|emb|CAB49415.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5] Length = 323 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 19/240 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S ++ R + I VAVSGG DS+ LL L + R + AI++D Sbjct: 29 MVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKL---RKRFPFEIVAITIDE 85 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105 ++ V L + H + +K+ + G + Sbjct: 86 GIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVW 145 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R L+++ A+ + + DD+++ M R + +G +G ++++ + Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRS 264 >gi|304436546|ref|ZP_07396517.1| ExsB family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370460|gb|EFM24114.1| ExsB family protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 259 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 17/233 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + HIL+ VSGG DS+ L AL +L +R +A +++ Sbjct: 10 FSKLMRAVVEF-ELIDNGDHILIGVSGGKDSIFLTYALA-ILRERLKKDFTIAAFTIN-- 65 Query: 62 LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 D + ++ C L + + VV + + R ++ +A Sbjct: 66 --PQFDDPFDTDAIAAFCKSLGVPYEVVDVDIAGAIVEQEEKSPCFTCAFFRRGAVNRYA 123 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + AH DD +ET M G + T L + + RP + R Sbjct: 124 KEHHMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLDKTGITVIRPLVYFRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++I + + P + R V+ + + L +R Sbjct: 180 QEIIDAIPLHGFTPIPSPCPHNGNTTRQAVKELIAHLSAENPNLYNHLAAGMR 232 >gi|253681114|ref|ZP_04861917.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str. 1873] gi|253562963|gb|EES92409.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str. 1873] Length = 239 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 15/218 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L++ S + AI++D A + + Sbjct: 18 IQSGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFELIAITLD----PGAGADFTEMIR 72 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + + + + + ++ + R +++HAK + I H + Sbjct: 73 ICKELNVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G + + DT L ++ I RP + + I+SF+ NIS Sbjct: 133 DAIETLLMSMF----YEGRINTFLPDTYLSRADIHIIRPMVYIDEQSIKSFINNSNISIV 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 E+P + +R ++ ++ LK L Sbjct: 189 ENPCPANGFTKREYMKNLTYSLENDIPGLKNNLLNSLS 226 >gi|197303257|ref|ZP_03168298.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC 29176] gi|197297683|gb|EDY32242.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC 29176] Length = 238 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 18/233 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 LS I L + V VSGG DS+ LL A+ + + SAI+ + Sbjct: 6 LLSLIRQAIEEYHMLEDGDRVAVGVSGGKDSLTLLYAMRQLQRFYP-KNFELSAITCNVG 64 Query: 62 LRETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113 + + + VSD C L+I + V K P+ + + R + + Sbjct: 65 F-----EGMDFTGVSDFCDSLKIPYEQVDTKIAEIVFQENPEIRPCSLCAKLRKGAMYKQ 119 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + I AH DD +ET M +G + T+L + + + RP + Sbjct: 120 LAELGINKIAYAHNKDDFIETALMSLI----YEGRFYAFPPMTVLPEAGVTVIRPMMYVP 175 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + + +F++++ I ++ D +R R+ + I+ K + + Sbjct: 176 EKGVANFVVEQGIQIVKNACPVDGSTKREYARQLMEQINRETPGAKDRMMHAI 228 >gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS] Length = 812 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 9/157 (5%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + P +I VSGG DSM L ++ + + A VDH RE + DE V Sbjct: 35 KENALPRNI---VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKV 91 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + V++ + + AR RY + T N + H Sbjct: 92 AGWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHH 151 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 DD +ET +R + + G+ I +LW Sbjct: 152 RDDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLW 188 Score = 53.8 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%) Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219 ++I RPF + + + + + DP+N D R VR+ + DL Sbjct: 239 GGVYIFRPFRSFPKARLEATCRVARVPFVIDPTNEDHTLTVRNTVRKLLSSGDLPRALQS 298 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + N + ++ + I+ D Sbjct: 299 PSILAFISK--NQRAKERLQDLTDSFLKLVRVINFDF 333 >gi|291531576|emb|CBK97161.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium siraeum 70/3] Length = 241 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 19/230 (8%) Query: 9 VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 +R V+ I V VSGG DS+ LL L + F +A+++D Sbjct: 8 IRKAVQDFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117 V+ +C +L + S+V + + + + + R + + AK Sbjct: 67 PNNY---EAVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H DD +ET M +G T L ++ + RP + + Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 S + + D R + + F+RD++ K++ F LR Sbjct: 180 LSACNRNGFEIIKSVCPADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229 >gi|302872795|ref|YP_003841431.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575654|gb|ADL43445.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 235 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K AI+VD Sbjct: 5 FSKVRKAVEDF-EMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----ESMDFLPIKEFCDKINVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITVIRPMIYVK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 ++RS + + +P + + R R++ FV+ + K F ++ + Sbjct: 174 EHELRSAAKKLELPVITNPCPANGKTNRQRIKEFVKSLKQFHPVTKDLVFNAIKRNI 230 >gi|164428026|ref|XP_956207.2| hypothetical protein NCU01570 [Neurospora crassa OR74A] gi|16416041|emb|CAD01129.1| conserved hypothetical protein [Neurospora crassa] gi|157071979|gb|EAA26971.2| predicted protein [Neurospora crassa OR74A] Length = 797 Score = 122 bits (307), Expect = 8e-26, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 27/159 (16%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---------------KFSAISVDHC 61 HI A+SGG DSM L H + ++S K A+ VDH Sbjct: 33 PRHRHIGCAISGGVDSMALAFLFHRLKQEKSLNASVSPNEQFRVGDNILGKVRAVIVDHG 92 Query: 62 LRETAKDEVRYVS-----DVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYAL 109 LRE + +E + V+ + + ++W+ + K + AR+ RYA Sbjct: 93 LREGSDEEAQKVAHAIKTKIGDMVDPTIETINWESELGPGVDPKTHPSIEPLARKLRYAA 152 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 I+ + N + T H DDQ ET+ MR +G+ Sbjct: 153 IAGVCQRHNICSLFTGHHEDDQYETILMRMISGRGYRGL 191 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 16/170 (9%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218 D + I RP L ++ + + + I W ED +N D F R +R V+ L Sbjct: 290 DGGIMIYRPLLGFGKDRLIATCEENGIPWFEDHTNADPTFTPRNAIRYLVKHHQLPNALQ 349 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 K Q A + + ++ +++ + + L G Sbjct: 350 KPAILQLAARCRARVAAEEAEAGRVLERLYVHDLATTAGTVEAEMPRFRL-------PGG 402 Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328 L S+ R + +I ++I R L + NLPTL Sbjct: 403 PRLSRRSSVWRKRRLVH-----YRTIAAIIIRR---LLSLVTPNHNLPTL 444 >gi|332157910|ref|YP_004423189.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2] gi|331033373|gb|AEC51185.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2] Length = 323 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 19/240 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S ++ R + I VAVSGG DS+ LL L + R + AI++D Sbjct: 29 MVESKVKRTIRKYRMIRKGERIGVAVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDE 85 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105 ++ V L + H + +K+ + G + Sbjct: 86 GIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVQIMGERGERLGACSYCGVW 145 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R L+++ A+ + + DD+++ M R + +G +G ++++ + Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264 >gi|14591444|ref|NP_143524.1| hypothetical protein PH1680 [Pyrococcus horikoshii OT3] gi|3258109|dbj|BAA30792.1| 320aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 320 Score = 122 bits (307), Expect = 9e-26, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 19/240 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M S ++ R + I VAVSGG DS+ LL L + R + AI++D Sbjct: 29 MVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDE 85 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105 ++ ++ L + H + +K+ + G + Sbjct: 86 GIKGYRDKSIKVAKKNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVW 145 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R L+++ A+ + + DD+++ M R + +G +G ++++ + Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQMFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264 >gi|297544802|ref|YP_003677104.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842577|gb|ADH61093.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 235 Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F KF +++ + + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTL-----GYDNFDPKPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + + K + + R ++ AK + AH +DD Sbjct: 76 REKEIPFFIKETEIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + R +R + D+ + + F ++ + Sbjct: 192 PCPVEGHTTRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230 >gi|168213914|ref|ZP_02639539.1| ExsB family protein [Clostridium perfringens CPE str. F4969] gi|170714588|gb|EDT26770.1| ExsB family protein [Clostridium perfringens CPE str. F4969] Length = 244 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 19/232 (8%) Query: 4 SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + R ++ +L+ I V +SGG DS+ LL L + S K + AI+++ Sbjct: 6 KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + ++C + + + + K + + R ++++A Sbjct: 65 GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H DD LET+ + + +G + ++ NL + RP + Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 IR + N ++P D + +R ++ +R +D K F+ L Sbjct: 176 SQIRKAATEYNFPVIKNPCPADGKTKREDMKNLIRSLDKTMPGFKKNLFKSL 227 >gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I] gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic archaeon RC-I] Length = 308 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R HI VA+SGG DS L L + RS IKFSAI+VD + + + Y Sbjct: 42 RMAKPGDHIAVAMSGGKDSAVTLSILVDTFTTRS--NIKFSAITVDEGIEGYRNESIPYA 99 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLI 122 ++C RL + H VVS+K T +RE R L++ A+ I A + Sbjct: 100 KELCDRLGVPHYVVSFKEEIGHTLDDILSRERKEASCTYCGVFRRTLLNRKAREIGANKL 159 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD+ + V + E+ L+ + + + + +P + ++I + Sbjct: 160 ATGHNLDDEAQVVLLNVMNGDVER---LARLRPSRAQEGLIPRIKPLIDVPEKEIALYAF 216 Query: 183 QRNISW 188 + + + Sbjct: 217 LKKLPF 222 >gi|260887263|ref|ZP_05898526.1| ExsB family protein [Selenomonas sputigena ATCC 35185] gi|330838980|ref|YP_004413560.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185] gi|260863325|gb|EEX77825.1| ExsB family protein [Selenomonas sputigena ATCC 35185] gi|329746744|gb|AEC00101.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185] Length = 263 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 88/249 (35%), Gaps = 20/249 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + + IL+ +SGG DS+ L AL +L R A+++D Sbjct: 9 FSKLMRAVVEF-QLIEDDDRILIGISGGKDSIFLAYALA-ILQKRMKKNFSLCALTID-- 64 Query: 62 LRETAKDE--VRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 ++ V ++ C + I VS P+ R I+ +A Sbjct: 65 --PQFTEDFPVARIASFCEEISIPFEAVSVNIAGTIEETPEKNPCFTCAFFRRGAINRYA 122 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + AH DD +ET+ M G + T L + + RP + R Sbjct: 123 QEHGCNKVAYAHHNDDAVETLLM----GILYSGQIHTFTPKTYLDRSGITVIRPLVYFRE 178 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 +IR + S P D R V+ + + + +R NAV Sbjct: 179 SEIRDAIAVHGFSPIPSPCPLDGTTMRQEVKELISSWEKKDPQIYHHLAASMR---ENAV 235 Query: 235 AMLIPKYLT 243 L P+ T Sbjct: 236 GELWPRMQT 244 >gi|260437103|ref|ZP_05790919.1| ExsB family protein [Butyrivibrio crossotus DSM 2876] gi|292810415|gb|EFF69620.1| ExsB family protein [Butyrivibrio crossotus DSM 2876] Length = 242 Score = 121 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 18/219 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I + +SGG DS+ LL AL + K + AI+V L + + + V ++ Sbjct: 23 GDKIAIGISGGKDSLTLLYALAGLRRFYP-KKYELVAITVKLGL-----ENMDFTPVKEL 76 Query: 77 CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C +L + + V + ++ ++ + + R +E A + AH DD Sbjct: 77 CDKLEVPYYTVDTEIYQIIFEARKESNPCSLCAKMRKGAFNEKALELGCNKFAYAHHRDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET YM +G + T + L + RP + I+SF + + + Sbjct: 137 LIETFYMSLM----YEGRIHTFSPVTYMDKSGLTLIRPLMLIPEYAIKSFSKRYELPIVK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + D +R ++ + ++ L F + Sbjct: 193 NQCPADGYTKRQYIKDMLHNLSKENPGLTEHSFTAIINA 231 >gi|326389916|ref|ZP_08211479.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993976|gb|EGD52405.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 235 Score = 121 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F +KF +++ + V + C Sbjct: 24 IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTL-----GYDNFDPTPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + K + + R ++ AK + AH +DD Sbjct: 76 REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + +R +R + D+ + + F ++ V Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDV 230 >gi|332653827|ref|ZP_08419571.1| ExsB family protein [Ruminococcaceae bacterium D16] gi|332516913|gb|EGJ46518.1| ExsB family protein [Ruminococcaceae bacterium D16] Length = 256 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 14/221 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--V 73 + + V VSGG DS+ LL AL + + AI++D + + + V Sbjct: 18 IAPNDRVAVGVSGGKDSLMLLTALAKLREFYPIP-FEVEAITLDMG-HADGRPGMDFTPV 75 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + C L + ++++ + + + + + + R + K T I H Sbjct: 76 ARYCEELGVPYTLIPSEIHHIIFDVRKEKNPCSMCAKMRRGALHNAMKERGITKIALGHH 135 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DD +ET++M +G T L + + RP L C + +R + ++ Sbjct: 136 YDDAVETLFMSLI----FEGRLSCFQPVTWLDRMGITQIRPMLYCGEQMVRHTAQRLDLP 191 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 E+P + +R ++ + +++ LK + F ++ Sbjct: 192 VVENPCPANGNTKRQEIKELIYELNGRYPGLKSRAFGAMQR 232 >gi|307267037|ref|ZP_07548552.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917962|gb|EFN48221.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 235 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F +KF +++ + V + C Sbjct: 24 IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTL-----GYDNFDPTPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + K + + R ++ AK + AH +DD Sbjct: 76 REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + +R +R + D+ + + F ++ + Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230 >gi|156047811|ref|XP_001589873.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980] gi|154693990|gb|EDN93728.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980 UF-70] Length = 587 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 73/437 (16%), Positives = 126/437 (28%), Gaps = 123/437 (28%) Query: 26 VSGGSDSMGLLIALHSVLSDR----------SFGKIKFSAISVDHCLRETAKDEVRYVSD 75 VSGG DSM L + ++ KI F AI V+H +R+ + +E + V Sbjct: 37 VSGGVDSMALAALCMQMKNNYIPFASDGYPIHLNKIDFRAIIVNHGVRDGSLEEAQKVMK 96 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 V L + AR+ R+ I ++ + + ++ H DDQ ETV Sbjct: 97 V---------------------LESLARKYRFQAIGKYCQKSDINSLLLGHHSDDQAETV 135 Query: 136 YMRSQRDYAEKG-MGLS---------GMCDTILYDLNLWISRPFLRCRRED--------- 176 MR + G +G+ G+ + +S P R+ Sbjct: 136 VMRLAKGALGAGLLGIKPSSPIPECGGLYGVHESGSPITLSPPITNLNRQTKPLPSRQTG 195 Query: 177 --------------------------------------IRSFLLQRNISWCEDPSNTDDR 198 + + + W ED +N D Sbjct: 196 QNNIDSPASGAKNIMPELKVESGGITLYRPLLEFPKERLIATCKALGMEWFEDDTNNDPT 255 Query: 199 -FERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVNNAVAMLIPKYLTVHM---RS 248 +R +R L ++ K +FQ+ V LI K R Sbjct: 256 LTDRNAIRYLYDRTGLPSILPKSRVLSLAAQFQNADNLRQQEVDQLIKKCKVTSFSTRRG 315 Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--------SGKRG 300 + I + D+ + + ++ S+E+ + + Sbjct: 316 TLIIRFPFIAHDAPQRSTIAAMLLRRIIMTVTPNSVVSLEQALKAVPEIFPLSENEIAPK 375 Query: 301 CVSIGRVVIDR----------RANFLWITRAVRNLPTLI----LYPEETTVW---DGRYQ 343 + V+ ++ R P I L PE+ W D RY Sbjct: 376 IFNTAGVLFQPINVDPKIGGSNEWHIFRQPRYRYSPDEIVVPELLPEKQPSWVLFDNRYW 435 Query: 344 FQNLSDSLIQIGPQSYR 360 ++ Q G R Sbjct: 436 LSIHNELASQAGSLVVR 452 >gi|62185135|ref|YP_219920.1| hypothetical protein CAB507 [Chlamydophila abortus S26/3] gi|62148202|emb|CAH63959.1| conserved hypothetical protein [Chlamydophila abortus S26/3] Length = 254 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 22/236 (9%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I+VA+SGG DS+ LL+ L ++ S R F K+ A+++ Sbjct: 19 SLVRKALYTYSMLENHTKIVVALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ +Y++++C ++ + +S V+ P+ + + R L+ + AK + AT + Sbjct: 78 CGSEVSKQYLANICDKIHVPYSSVT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + IR F + Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHF--GITILRPLIFTPESYIRKFAKE 192 Query: 184 RNISWCEDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F RV R +R AL L F R + A+ Sbjct: 193 SG-------------FARVTCRCPVVSLRTKTEEALKLLEDVFPQARHNIALAIEQ 235 >gi|291533245|emb|CBL06358.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Megamonas hypermegale ART12/1] Length = 258 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 12/213 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 IL+ +SGG DS+ + AL + + AI+++ + E C + Sbjct: 26 DKILIGLSGGKDSLFMAYALTELKNTLK-KNFTLGAITINPMFTKDFSCEAM--QKFCDK 82 Query: 80 LRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + + + ++ + R I+ +AK I AH DD +ET Sbjct: 83 LNMPYHIHEVNIAETIANQDNKNACYSCAFFRRGAINGYAKEHGYNKIAYAHNHDDAVET 142 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M G + M T L ++ + RP L R E+IR+ L C P Sbjct: 143 FFMNLF----YSGQLKTFMPSTYLSRSDVTVIRPLLYFREEEIRNALSLHGQEPCAPPCP 198 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + R + + + ++ L +R Sbjct: 199 FNGNTMRQKAKNLIEELSKENPLLYEHLSAAMR 231 >gi|315231685|ref|YP_004072121.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP] gi|315184713|gb|ADT84898.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP] Length = 321 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 28/239 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63 ++VR + R + I V VSGG DS+ LL L + R + AI++D + R Sbjct: 36 QTVRKY-RMIKRGERIAVGVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDEGIEGYR 91 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAAREAR 106 + V L I H V S+K + G + R Sbjct: 92 PPS---VEIAKKNAELLGIEHHVYSFKEYIGFTLDETVQIMGSFEKGERVGACSYCGVWR 148 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 L++ A+ + A + DD+ + M R + +G +G ++++ + Sbjct: 149 RWLLNYAAQDVQADKLAIGLNLDDEAQVFLMNIMRGDIAR-LGRTGPYYEVIHEDLVPRI 207 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 +P ++I + + NI R +R ++ +++ K + + Sbjct: 208 KPLREVPEKEIVLYAVLNNIEVDFSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQILRS 266 >gi|289578527|ref|YP_003477154.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] gi|289528240|gb|ADD02592.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] Length = 235 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F KF +++ + + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTL-----GYDNFDPKPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + + K + + R ++ AK + AH +DD Sbjct: 76 REKEIPFFIKETEIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFVMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + +R +R + D+ + + F ++ + Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230 >gi|167040443|ref|YP_001663428.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514] gi|256752475|ref|ZP_05493333.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914494|ref|ZP_07131810.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307724270|ref|YP_003904021.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513] gi|166854683|gb|ABY93092.1| PP-loop domain protein [Thermoanaerobacter sp. X514] gi|256748677|gb|EEU61723.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889429|gb|EFK84575.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307581331|gb|ADN54730.1| PP-loop domain protein [Thermoanaerobacter sp. X513] Length = 235 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F KF +++ + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTL-----GYDNFDPTPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + K + + R ++ AK + AH +DD Sbjct: 76 REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + +R +R + D+ + + F ++ V Sbjct: 192 PCPVEGHTKRHYIRNLLIDLKKEIPEIDKRIFTAIKKDV 230 >gi|315453138|ref|YP_004073408.1| putative PP-loop family protein [Helicobacter felis ATCC 49179] gi|315132190|emb|CBY82818.1| Putative PP-loop family protein [Helicobacter felis ATCC 49179] Length = 256 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 17/176 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ILV +SGG DS+ LL L + + + +F AI+V + L E ++ ++S +C+ Sbjct: 26 GDRILVGLSGGKDSI-LLSCLLARMRAHAPFNFEFKAITVHYGLNE----DLEWLSQLCT 80 Query: 79 RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + +V + + Q+ + R ++ +A + AH DD Sbjct: 81 EQNIPYEIVRTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALENGYNKLALAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +E+ +M + + L M + L++ RP + R F+ +NI Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIP 191 >gi|18309972|ref|NP_561906.1| hypothetical protein CPE0990 [Clostridium perfringens str. 13] gi|110801239|ref|YP_695693.1| ExsB family protein [Clostridium perfringens ATCC 13124] gi|110801904|ref|YP_698381.1| PP-loop family protein [Clostridium perfringens SM101] gi|168208060|ref|ZP_02634065.1| ExsB family protein [Clostridium perfringens E str. JGS1987] gi|168211804|ref|ZP_02637429.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626] gi|169341156|ref|ZP_02863249.1| ExsB family protein [Clostridium perfringens C str. JGS1495] gi|18144650|dbj|BAB80696.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675886|gb|ABG84873.1| ExsB family protein [Clostridium perfringens ATCC 13124] gi|110682405|gb|ABG85775.1| PP-loop family protein [Clostridium perfringens SM101] gi|169299763|gb|EDS81815.1| ExsB family protein [Clostridium perfringens C str. JGS1495] gi|170660645|gb|EDT13328.1| ExsB family protein [Clostridium perfringens E str. JGS1987] gi|170710238|gb|EDT22420.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626] Length = 244 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 19/232 (8%) Query: 4 SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + R ++ +L+ I V +SGG DS+ LL L + S K + AI+++ Sbjct: 6 KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + ++C + + + + K + + R ++++A Sbjct: 65 GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H DD LET+ + + +G + ++ NL + RP + Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 IR + + N ++P D + +R ++ +R +D K F+ L Sbjct: 176 SQIRKAVAEYNFPVIKNPCPADGKTKREDMKNLIRSLDKTMPGFKKNLFKSL 227 >gi|167037749|ref|YP_001665327.1| PP-loop domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116163|ref|YP_004186322.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856583|gb|ABY94991.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929254|gb|ADV79939.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 235 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL LH + ++F KF +++ + V + C Sbjct: 24 IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTL-----GYDNFDPTPVENFC 75 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + K + + R ++ AK + AH +DD Sbjct: 76 QEKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T M G + + L + + RP + + +DIRS + + N+ ++ Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + +R +R + D+ + + F ++ V Sbjct: 192 PCPVEGHTKRHYIRNLLIDLKKEIPEIDKRIFTAIKKDV 230 >gi|298704809|emb|CBJ48957.1| conserved unknown protein [Ectocarpus siliculosus] Length = 542 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 30/268 (11%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75 V +LV VSGGSDS+ L+ + ++ A +H LR + + V Sbjct: 30 VAGKEVLVLVSGGSDSVA-LLLALERAAKTFQPPLRVEAAHFNHGLRGKDSDADQDLVVK 88 Query: 76 VCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINAT----- 120 + LR+ V WK + Q R ++++ A Sbjct: 89 MADSLRVPLHVRRWKGPEEGGTGGPGSGMQERARRWRRAEAKDILAKSMTEAGAGRGGRG 148 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +I TAH DDQ ETV +++ R + GM + RP L + ++ F Sbjct: 149 VIATAHHKDDQTETVLLKALRGAHI--TNIQGMAW-----HSDPFVRPLLGAHKTELLDF 201 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNNAV 234 L++ +W ED SN ++ R RVR + + AL ++++ V Sbjct: 202 LVRGRHAWREDGSNQVAKYARNRVRLQLIPLLRELAGGTKALDTRVEELSRQSHFARQMV 261 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDST 262 ++ H+ + D T Sbjct: 262 EREALRWERAHLSGCRFDDEAGGCRDET 289 >gi|160880393|ref|YP_001559361.1| PP-loop domain-containing protein [Clostridium phytofermentans ISDg] gi|160429059|gb|ABX42622.1| PP-loop domain protein [Clostridium phytofermentans ISDg] Length = 242 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 85/214 (39%), Gaps = 14/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I + +SGG DS+ LL AL + K AI+V + ++ +C Sbjct: 23 GDKIAIGISGGKDSLTLLYALAGLRRFYP-KKFTLEAITVSLGF---DNFDTSKIAALCK 78 Query: 79 RLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + ++VV+ + + ++ + + R ++ AK + AH DD + Sbjct: 79 ELDVNYTVVNTDIAPIIFETRKESNPCSLCAKMRKGAFNDKAKELGCNKSAYAHHKDDVI 138 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M +G + T L +++ + RP + D+ F N+S ++P Sbjct: 139 ETTLMSLL----FEGRYYTFSPITYLDRMDITLIRPLIYVDEVDVIGFKNAYNLSVLKNP 194 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R + V+ ++ +++ F + Sbjct: 195 CPIDGYTKREYAKNLVKQLNQEHPGARVRLFHAV 228 >gi|21228898|ref|NP_634820.1| hypothetical protein MM_2796 [Methanosarcina mazei Go1] gi|20907428|gb|AAM32492.1| conserved protein [Methanosarcina mazei Go1] Length = 302 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 26/254 (10%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E ++ VR S+ I VA+SGG DS L +H +L DR I+ AIS Sbjct: 28 FIEDVERKIKLTVRRDYSIKKNDVIAVALSGGKDSSVALYIMHKILGDR--PDIQIVAIS 85 Query: 58 VD---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAR 103 VD H R + + + L + H + S+K+ + G + Sbjct: 86 VDEGIHGYRPQS---LELAKQLTEALGVRHIIKSFKDEHGATMDELAVMDREKGTCSYCG 142 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R ++++ A I AT ++T H DD+ +T+ + R E+ + + + + + Sbjct: 143 VLRKSILNRVAIEIGATKLVTGHNLDDEAQTILLNHFRGDMER---MVRLAPPVAVEGLV 199 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P +++ + L ++ R +R + + + K Sbjct: 200 MRAKPLRNIPEKEVALYALVNSLPVDFSECPYAGEALRGEIRELLNGFETNHPGTKYSLL 259 Query: 224 QDLRVKVNNAVAML 237 + V L Sbjct: 260 RGFDKLVGALAKEL 273 >gi|221214714|ref|ZP_03587683.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia multivorans CGD1] gi|221165253|gb|EED97730.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia multivorans CGD1] Length = 154 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++V + + A I +A SGG DS LL A + R+ G + A+ V H L Sbjct: 14 LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDA-----AVRAAGASRCVALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124 A + + +RL +A + + G+ A+ARE RYA + + A + Sbjct: 69 ADAWAAHAREQAARLGVAFDAMHVDVPRDSGVGIEASARERRYAALDAMCERHGAAALWL 128 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG 149 A DDQ ETV ++ R G+ Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLA 153 >gi|167720279|ref|ZP_02403515.1| putative cell cycle protein [Burkholderia pseudomallei DM98] Length = 392 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 15/232 (6%) Query: 95 QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154 G+ A+AR+ARY + A + A DDQ ETV ++ R G+ Sbjct: 2 GQGIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLLRGAGIAGLAAMA-P 60 Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 ++ RP L R + + Q + W +D SNTD R+ R +R V L Sbjct: 61 QYRPALADVVRMRPLLHLLRAQLECYAQQHALRWIDDESNTDTRYARNALRVDV----LP 116 Query: 215 ALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL------F 265 AL F+D + A L+ + +R++ +L+ D+ + Sbjct: 117 ALAPHFPGFRDALARTAQHAAAAQRLLDDLAAIDLRAVARADVRVLSRDALVALDDERGA 176 Query: 266 YLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 LLR G S M + + + V + + + Sbjct: 177 NLLRYWMRSLGLPGASAARLAEMVKQLRAARDAHALRVDHAGWRLRLYRDGV 228 >gi|237796737|ref|YP_002864289.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] gi|229260662|gb|ACQ51695.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] Length = 249 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKVALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + P D + R ++ + ++ Sbjct: 187 MVKKYNLPVVKSPCPEDKKTTREEIKNLMFKLE 219 >gi|256372668|ref|YP_003110492.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256009252|gb|ACU54819.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 306 Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats. Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 27/173 (15%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V VSGG+DS+GL L FG + AI VDH LR + E V+ + L I+ Sbjct: 39 VGVSGGADSLGLAALLA-------FGGKRVLAIHVDHGLRPGSAREGADVARQLAPLGIS 91 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 + P L A AR AR + + A+ AHT DDQ ETV + R Sbjct: 92 VLERRVRVI-PGPNLEARARSARLGALGDAAR---------AHTMDDQAETVLLNLLRGS 141 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G+G P L RR ++ + DP N D Sbjct: 142 GLVGIGAMEPGP----------LHPALGLRRSELARVCEAAGLVPLVDPMNQD 184 >gi|29840280|ref|NP_829386.1| hypothetical protein CCA00521 [Chlamydophila caviae GPIC] gi|29834628|gb|AAP05264.1| conserved hypothetical protein [Chlamydophila caviae GPIC] Length = 247 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 20/238 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ Sbjct: 19 SLVRKALYTYSMLENHTKIVVALSGGKDSLSLLLMLKAI-SGRGFPELDLYAVNIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A+ +Y++++C ++++ + ++ P+ + + R L+ + AK + AT + Sbjct: 78 CGAEVSQQYLANICDKIQVPFTSIA-SPYDPEVPECYSCSQVRRRLLFQAAKELGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + +D + I RP + IR F + Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHFD--ITILRPLILTPESWIRKFAKE 192 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 F RV R V + +K +D+ + + +A+ I ++ Sbjct: 193 SG-------------FARVTCRCPVVSL-RTKTESALKLLEDVFPQARHNIALAIEQH 236 >gi|28493557|ref|NP_787718.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str. Twist] gi|61217341|sp|Q83MT2|TILS_TROWT RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28476599|gb|AAO44687.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str. Twist] Length = 415 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%) Query: 7 ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + R + +L H +L+A+SGG DS+ ++ V+ + + A+ VDH L+ Sbjct: 13 NARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNG---RVGAVVVDHGLQ 69 Query: 64 ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E + V + + + S+ G A+AR ARYA + + A I Sbjct: 70 ENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFYDALEETKAYAI 129 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148 + AHT DDQ ETV + R + Sbjct: 130 ILAHTLDDQAETVLLGLMRGSGPSSL 155 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 RPFL R + + + DP N D RF RVR+R V + + + +K Sbjct: 246 FIRPFLDITRHETGKICEFYGLDYWNDPHNEDVRFSRVRIRHNVMPVLENEIGPGVKYAL 305 Query: 225 DLRVK--------VNNAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSA-AI 274 K +++ L+ + + I + + L + ++R++A Sbjct: 306 SRTAKLAQLDTEYLDHLSNELLDEIASKESDWSIRLPINTLQKTPVPIRLRVIRLAALQY 365 Query: 275 CGGQISLPGYRSMERVM 291 +S R +ER++ Sbjct: 366 FTVSLSFKHTRQIERLL 382 >gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] gi|119959144|gb|ABM16149.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1] Length = 323 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 114/324 (35%), Gaps = 30/324 (9%) Query: 8 SVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +V FVR VA+SGG+DS L+ + +A+ VDH L+ + Sbjct: 13 AVAGFVRDHAAASGPWCVALSGGADS--------LALTAVAAALRPTTALIVDHGLQPGS 64 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D L + V G AAAR ARY + E + ++ AH Sbjct: 65 ARVAATARDQAMALGCVGAQVLCVEVGVGGGPEAAARAARYRALEEARR---GAPVLLAH 121 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T DDQ ETV + R + + D RP L RR R + + Sbjct: 122 TLDDQAETVLLGLGRGSGARSIAGMRPSDPPW-------CRPLLGVRRAVTRLACAELGL 174 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVH 245 + +DP NTD RF RVR+R V + L + + L + Sbjct: 175 TPWQDPHNTDRRFTRVRLRTEVLPLLEDVLGGGVAEALARTATALREDTDALDGIAARIV 234 Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-------G 297 + +L + + + ++R + GG + + + V + Sbjct: 235 TVPGADLDTAVLTPLPAAVRRRVIR--GWLLGGGANGLTDKQIRAVDDLVVDWHGQGGVA 292 Query: 298 KRGCVSIGRVVIDRRANFLWITRA 321 G ++ R+ RR + L + R Sbjct: 293 VPGGLARERLFAGRRKDVLTLYRE 316 >gi|322700481|gb|EFY92236.1| PP-loop family protein [Metarhizium acridum CQMa 102] Length = 653 Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 18/164 (10%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------ 52 F +E+V RF P + +A+SGG DSM + +++ KI Sbjct: 20 FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLIRTHRGIKIADNPTEG 79 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103 + VDH LR + E V+ +L + ++WK+ + + AR Sbjct: 80 AFGVIVDHRLRPESTLEAAEVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNIESVAR 139 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 RY ++ + +NAT + AH DDQ ETV MR + +G Sbjct: 140 TKRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183 Score = 62.6 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218 D + + RP L ++ + + I W EDP+N D R +R D L A L Sbjct: 281 DGGIMVYRPLLEFDKDRLIATCEANKIKWFEDPTNADPTLTPRNAIRHM--DHSLLAPEL 338 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 + + D+ + + + MR + D Sbjct: 339 RKEAILDMSREAKRRTRLEEAEARRWLMREAVIQDFDP 376 >gi|256826250|ref|YP_003150210.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547] gi|256689643|gb|ACV07445.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547] Length = 356 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 60/284 (21%), Positives = 91/284 (32%), Gaps = 22/284 (7%) Query: 5 PIESVRFFVRSLVYPA-----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--S 57 + +R VR + A +L+A SGG+DS+ ++ A+ G Sbjct: 9 AVAEIRRAVRQPLSDAVSAGRAVLLACSGGADSVAMVAAVAFEADRLRRGGASPVVAAGV 68 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKT 116 VDH L+ ++ C L I + ++ G A AR AR+A + A Sbjct: 69 VDHGLQAGSEQVAAGAVARCRALGIEQVWSERVEVTRTGEGPEAEARRARHAALERWATA 128 Query: 117 INA-------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + T AHT DDQ E V + R + L+GM + RPF Sbjct: 129 LAGGPTGGVGTETWLAHTRDDQAEQVLLGLLRGAGTR--SLAGMA-----PGRGDLVRPF 181 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 L R + DP N D RF RVR RR + + Sbjct: 182 LAVSAATTRRACRDLGLPVHHDPHNDDPRFTRVRARRVLAHLSAELGEDLAPALARTAEH 241 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273 +L + + + + LR Sbjct: 242 ARADADLLDALAAARAEGLAVEQDGAVRVAELAAIEDALRRRVW 285 >gi|160938841|ref|ZP_02086192.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC BAA-613] gi|158437804|gb|EDP15564.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC BAA-613] Length = 241 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 18/216 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVDHCLRETAKDEVRYVSDV 76 I + VSGG DS+ LH++ R F K + AI+VD L E V+ + Sbjct: 23 GDRIAIGVSGGKDSL---TLLHALHHLRRFYPEKYELCAITVDLGL-GNMDLEP--VAAM 76 Query: 77 CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C I + ++S + + + +T + + R ++E AK + I AH DD Sbjct: 77 CREFEIPYEIISTEIGAVLFDIRKETNPCSLCAKMRKGALNEKAKEMGCNKIAYAHHRDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ M +G S T L ++L + RP + D+ F + + C+ Sbjct: 137 VIETMMMSLF----YEGRFHSFSPLTYLDRMDLTVIRPMIFVTEADVIGFRNKYQLPVCK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +P D +R ++ + + ++K F+ + Sbjct: 193 NPCPMDGYTKRQYIKELIHRLQEDNPHIKDCMFRAI 228 >gi|329942871|ref|ZP_08291650.1| PP-loop family protein [Chlamydophila psittaci Cal10] gi|332287464|ref|YP_004422365.1| PP-loop family protein [Chlamydophila psittaci 6BC] gi|313848043|emb|CBY17041.1| conserved hypothetical protein [Chlamydophila psittaci RD1] gi|325506513|gb|ADZ18151.1| PP-loop family protein [Chlamydophila psittaci 6BC] gi|328815131|gb|EGF85120.1| PP-loop family protein [Chlamydophila psittaci Cal10] gi|328914712|gb|AEB55545.1| PP-loop type ATPase [Chlamydophila psittaci 6BC] Length = 247 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 22/236 (9%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L A I++A+SGG DS+ LL+ L ++ S R F K+ A+++ Sbjct: 19 SLVRKALYTYSMLENHAKIVIALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ +Y++++C ++ + +S ++ P+ + + R L+ + AK + AT + Sbjct: 78 CGSEVSKQYLANICDKIHVPYSSIT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + IR F + Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHF--GITILRPLILTPESWIRKFAKE 192 Query: 184 RNISWCEDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F RV R +R AL L F R + A+ Sbjct: 193 SG-------------FSRVTCRCPVVSLRTKTEEALKLLEDVFPQARHNIALAIEQ 235 >gi|15645796|ref|NP_207973.1| hypothetical protein HP1182 [Helicobacter pylori 26695] gi|108563546|ref|YP_627862.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1] gi|217033027|ref|ZP_03438497.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128] gi|298735806|ref|YP_003728331.1| hypothetical protein HPB8_310 [Helicobacter pylori B8] gi|2314342|gb|AAD08228.1| conserved hypothetical protein [Helicobacter pylori 26695] gi|107837319|gb|ABF85188.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1] gi|216945254|gb|EEC23934.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128] gi|298354995|emb|CBI65867.1| conserved hypothetical protein [Helicobacter pylori B8] gi|317009796|gb|ADU80376.1| hypothetical protein HPIN_05900 [Helicobacter pylori India7] Length = 253 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 28/231 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ L+ + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242 >gi|332673982|gb|AEE70799.1| PP-loop family protein [Helicobacter pylori 83] Length = 253 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H +V + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|317178518|dbj|BAJ56306.1| hypothetical protein HPF30_0209 [Helicobacter pylori F30] Length = 253 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H +V + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|224418112|ref|ZP_03656118.1| hypothetical protein HcanM9_02431 [Helicobacter canadensis MIT 98-5491] gi|253827439|ref|ZP_04870324.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313141647|ref|ZP_07803840.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|253510845|gb|EES89504.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] gi|313130678|gb|EFR48295.1| conserved hypothetical protein [Helicobacter canadensis MIT 98-5491] Length = 257 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 26/209 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F +F A++VD+ R E Y+ + C Sbjct: 28 GDRVLLGLSGGKDSILLATLLARLKKYAPF-NFEFKALTVDYG-RGG---EYEYIFEYCE 82 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + N + + + R + A I AH DD Sbjct: 83 KLGIPYELYRTDIYKILEENRREGSVYCSFCSRMRRGALYSKALEGGFNKIALAHHLDDA 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ M + A L M L++ RP + R I F+ + NI D Sbjct: 143 AESFMMNLTYNGA-----LRSMPPIYKAQNGLYVIRPLIFVRERQIIDFIAKNNIYIAPD 197 Query: 192 PSN------TDDR--FERVRVRRFVRDID 212 N +DD+ + R + ++ +++++ Sbjct: 198 -CNCPIMWQSDDKRPYAREKTKQMLKEME 225 >gi|168215907|ref|ZP_02641532.1| ExsB family protein [Clostridium perfringens NCTC 8239] gi|182381767|gb|EDT79246.1| ExsB family protein [Clostridium perfringens NCTC 8239] Length = 244 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 19/232 (8%) Query: 4 SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + R ++ +L+ I V +SGG DS+ LL L + S K + AI+++ Sbjct: 6 KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + ++C + + + + K + + R ++++A Sbjct: 65 GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H DD LET+ + + +G + ++ NL + RP + Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 IR + N ++P D + +R ++ +R +D K F+ L Sbjct: 176 SQIRKAAAEYNFPVIKNPCPADGKTKREDMKSLIRSLDKTIPGFKKNLFKSL 227 >gi|118443752|ref|YP_878987.1| hypothetical protein NT01CX_0521 [Clostridium novyi NT] gi|118134208|gb|ABK61252.1| conserved hypothetical protein [Clostridium novyi NT] Length = 239 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L++ S + AI++D A + + Sbjct: 18 IQAGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFELIAITLD----PGAGADFSEMIR 72 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + + K + + ++ + R +++HAK + + H + Sbjct: 73 ICKELNVPYYLFKTKIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G + DT L +L I RP + ++I++F+ NI Sbjct: 133 DAIETLLMSMF----YEGRINTFSPDTYLSRTDLHIIRPMIYIDEQNIKTFIKNSNIPIV 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 E+P + +R ++ ++ LK L Sbjct: 189 ENPCPANGFTKREYMKDLTYSLEKDIPGLKNNLLNSLS 226 >gi|242309060|ref|ZP_04808215.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239524484|gb|EEQ64350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 255 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 26/211 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F +F A++VD+ R E Y+ + C Sbjct: 28 GDKILLGLSGGKDSILLATLLARLKKYAPF-DFEFKALTVDYG-RGG---EYEYIFEYCE 82 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + N + T + R + A I AH DD Sbjct: 83 KLGIPYELYRTDIYKILEENRREGTVYCSFCSRMRRGALYSKALEGGFNKIALAHHLDDA 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ M + A L M L++ RP + R I F+ + NI D Sbjct: 143 AESFMMNLTYNGA-----LRSMPPIYKAKNGLYVIRPLIFVRERQIIDFIAKNNIYIAPD 197 Query: 192 PSN------TDDR--FERVRVRRFVRDIDLH 214 N +DD+ F R + ++ +++++++ Sbjct: 198 -CNCPIMWQSDDKRPFAREKTKQMLKEMEMN 227 >gi|308184928|ref|YP_003929061.1| putative PP-loop family ATPase [Helicobacter pylori SJM180] gi|308060848|gb|ADO02744.1| putative PP-loop family ATPase [Helicobacter pylori SJM180] Length = 253 Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 28/231 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ L+ + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242 >gi|332980869|ref|YP_004462310.1| PP-loop domain-containing protein [Mahella australiensis 50-1 BON] gi|332698547|gb|AEE95488.1| PP-loop domain protein [Mahella australiensis 50-1 BON] Length = 240 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 21/238 (8%) Query: 4 SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SV 58 + VR V+ I V VS G DS+ LL A+ + S F +F AI +V Sbjct: 9 RILGRVRKAVQDFDMIDEGDRIAVGVSAGKDSLTLLYAMSRLAS---FYPKRFEAIGITV 65 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISE 112 D A + + C RL + + VV + K + + R +++ Sbjct: 66 DQGF-PGADF--ALIQEFCDRLGVEYHVVPSNIKEVVFDIKKEHNPCSLCANLRRGMLNT 122 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + + AH DD +ET ++ +G L + + RP + Sbjct: 123 AARRLGCNKVALAHHRDDAIETFFLSLF----YEGRIYCFDPKVYLTRSGITVIRPLIYI 178 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + + + + +P + + +R ++RFV + K F +R K+ Sbjct: 179 KEAETKGMARRLQFPVITNPCPANGKTQREEMKRFVDGLSAFGPQTKDLVFNAIRRKL 236 >gi|313144378|ref|ZP_07806571.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129409|gb|EFR47026.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 274 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 28/231 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K +F A++VD+ R E Y+ + C Sbjct: 47 GDKVLLGLSGGKDSILLATILAYMQRHAPF-KFEFKALTVDYG-RGG---EYEYIFEYCE 101 Query: 79 RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + +N + T + R + A + AH DD Sbjct: 102 KLGIPYELYRTDIYEILEQNKREGTIYCSFCSRMRRGALYSKALEYGYNKLALAHHLDDA 161 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ +M + A + M + L + RP + R I F+ I D Sbjct: 162 AESFFMNLTYNGAMRS-----MPPIYRAENGLEVIRPLIFMRERQIIDFIASNGIYIAPD 216 Query: 192 ---PSNTDDR----FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P N D + R ++F+++++ F+ L+ +N A Sbjct: 217 CNCPINWLDSDKKPYAREATKQFLKNMESENP----NFFKSLKNAFSNIHA 263 >gi|224437935|ref|ZP_03658877.1| hypothetical protein HcinC1_08178 [Helicobacter cinaedi CCUG 18818] Length = 303 Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 28/231 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K +F A++VD+ R E Y+ + C Sbjct: 76 GDKVLLGLSGGKDSILLATILAYMQRHAPF-KFEFKALTVDYG-RGG---EYEYIFEYCE 130 Query: 79 RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + +N + T + R + A + AH DD Sbjct: 131 KLGIPYELYRTDIYEILEQNKREGTIYCSFCSRMRRGALYSKALEYGYNKLALAHHLDDA 190 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ +M + A + M + L + RP + R I F+ I D Sbjct: 191 AESFFMNLTYNGAMRS-----MPPIYRAENGLEVIRPLIFMRERQIIDFIASNGIYIAPD 245 Query: 192 ---PSNTDDR----FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P N D + R ++F+++++ F+ L+ +N A Sbjct: 246 CNCPINWLDSDKKPYAREATKQFLKNMESENP----NFFKSLKNAFSNIHA 292 >gi|28572333|ref|NP_789113.1| hypothetical protein TW171 [Tropheryma whipplei TW08/27] gi|61217337|sp|Q83I94|TILS_TROW8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|28410464|emb|CAD66850.1| conserved hypothetical protein [Tropheryma whipplei TW08/27] Length = 407 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%) Query: 7 ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + R + +L H +L+A+SGG DS+ ++ V+ + + A+ VDH L+ Sbjct: 13 NARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNG---RVGAVVVDHGLQ 69 Query: 64 ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 E + V + + + S+ G A+AR ARYA + + A I Sbjct: 70 ENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFYDTLEETKAYAI 129 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148 + AHT DDQ ETV + R + Sbjct: 130 ILAHTLDDQAETVLLGLMRGSGPSSL 155 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 RPFL R + + + DP N D RF RVR+R V + + + +K Sbjct: 238 FIRPFLDITRHETGKICEFYGLDYWNDPHNEDVRFSRVRIRHNVMPVLENEIGPGVKYAL 297 Query: 225 DLRVK--------VNNAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSA-AI 274 K +++ L+ + + I + + L + ++R++A Sbjct: 298 SRTAKLAQLDTEYLDHLSNELLDEIASKESDWSIRLPINTLQKTPVPIRLRVIRLAALQY 357 Query: 275 CGGQISLPGYRSMERVM 291 +S R +ER++ Sbjct: 358 FTVSLSFKHTRQIERLL 374 >gi|20807962|ref|NP_623133.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|20516534|gb|AAM24737.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 235 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 19/237 (8%) Query: 4 SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +R V+ I V VSGG DS+ LL LH + + F IKF + + Sbjct: 3 EILGKIRRAVQDFEMIQEGDAIAVGVSGGKDSITLLYGLHLL---KRFYPIKFEVMGL-- 57 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEH 113 L + + + C I V + K + + R +++ Sbjct: 58 MLSLGFENFDPTPIKNFCEEKGIPFFVKHTEIKKIVFDYRKEKNPCSLCANLRRGALNDF 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK + AH +DD + T M G + T L + + RP + R Sbjct: 118 AKEKGCNKVALAHHYDDLIVTFMMNLF----YNGRLHTFEPVTFLDRSKITLIRPLIYVR 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 +++RS + + N+ E+P R + +R+++ L + F ++ V Sbjct: 174 EKEVRSAVKKNNLPVVENPCPMAGNTTRHSIENLIRNLEKEIPELDKRIFTAIKKDV 230 >gi|208435075|ref|YP_002266741.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27] gi|254779731|ref|YP_003057837.1| putative PP-loop family ATPase [Helicobacter pylori B38] gi|208433004|gb|ACI27875.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27] gi|254001643|emb|CAX29794.1| Putative PP-loop family ATPase [Helicobacter pylori B38] Length = 253 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 28/231 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ L+ + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242 >gi|330801783|ref|XP_003288903.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum] gi|325081048|gb|EGC34579.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum] Length = 569 Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 8/198 (4%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--C 77 +++++ SGGSDS+ LL L + + +I I+ DH ++ E+ + Sbjct: 124 KNVILSCSGGSDSILLLYLLKQWIK-KGKKEITVRVITFDHKVQAEDIGEICKIIKKIIG 182 Query: 78 SRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 ++ V N KP + GL R+ RY + ++ ++ D E+ Sbjct: 183 RSTKVFSHEVITLNEKPLEFKNGLQQKLRDQRYKSLVSISEDNKENIVFYGTNLGDSFES 242 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 R G LSG+ + + N + RP + + DI +F + I + DP+N Sbjct: 243 FIHRVSSKSGLDG--LSGIREELKLSQNTTVYRPLIEISKNDITAFCNGKKIGFYSDPTN 300 Query: 195 TDDRFERVRVRRFVRDID 212 D F R R + + Sbjct: 301 LDLSFTRNLNRSLINQFE 318 >gi|210135340|ref|YP_002301779.1| PP-loop family protein [Helicobacter pylori P12] gi|210133308|gb|ACJ08299.1| PP-loop family protein [Helicobacter pylori P12] Length = 253 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 28/247 (11%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L + + + IL+ +SGG DS+ L L + F K F A++V + L Sbjct: 10 LHIVGKTNAAYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115 ++++++SD+C I H ++ + + + ++ + R + A Sbjct: 69 ----GEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKAL 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AH DD +E+ +M + + L M + L + RP ++ R Sbjct: 125 EEGYNKVAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREA 179 Query: 176 DIRSFLLQRNISWCED-------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 F+ +NI D P++ R+ + F++++ L+ + F L Sbjct: 180 SSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLEN 235 Query: 229 KVNNAVA 235 NN A Sbjct: 236 AFNNVQA 242 >gi|19553892|ref|NP_601894.1| ATPase [Corynebacterium glutamicum ATCC 13032] gi|62391535|ref|YP_226937.1| PP family ATPase [Corynebacterium glutamicum ATCC 13032] gi|61216526|sp|Q6M2E8|TILS_CORGL RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41326877|emb|CAF20721.1| ATPase of the PP-loop superfamily implicated in cell cycle control [Corynebacterium glutamicum ATCC 13032] Length = 314 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 106/276 (38%), Gaps = 36/276 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL ++VR +++ H+ + +SGG DS+ L+ A+ + S + +AI +DH Sbjct: 17 FLELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHN 64 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 L+ + + + + + A ++V P G+ AAA A Sbjct: 65 LQTGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDE 118 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I AHT DDQ ET + R +GM D L I RP L RR Sbjct: 119 IWVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGAC 171 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNA 233 ++ + DP N DD F RV +R V + + L L ++ + V Sbjct: 172 VELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGD 231 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 V + L + ++ + + +L LR Sbjct: 232 VE---KRRLEWQDGFPVTLAGEPTGLRRRMLADFLR 264 >gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] gi|296026425|gb|ADG77195.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM 20162] Length = 312 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 108/311 (34%), Gaps = 18/311 (5%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +V+ + P+ + VAVSGG DS ++L+ ++ A+ VDH L Sbjct: 9 LQIRRAVQHWAARYGAPSTVAVAVSGGPDS-------LALLAGAVAAGLEPVALVVDHGL 61 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + V G AAAR ARY + H + + Sbjct: 62 QPDSAATAARAAGQARSAGARRADVLTVIVDAAGGPEAAARTARYRALDAHR---DGLPV 118 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV + R + L+GM RP L RR R Sbjct: 119 LLGHTLDDQAETVLLGLGRGSGAR--SLAGMAAWAEPYG-----RPLLGVRRAVTRQACA 171 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + + +DP NTD R+ RVR+R V + L + + + Sbjct: 172 ELGLDPWDDPHNTDARYTRVRLRHEVLPLLEEVLGGGVAQALARTAASLRDDNDALDALT 231 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 + + DI ++ L LR A G + + + ++ G+ Sbjct: 232 PAPSGDELPV-ADIEHLPPALRRRALRAWLAGRGARALTAAHLAAVDALVSDWHGQGPAA 290 Query: 303 SIGRVVIDRRA 313 G R Sbjct: 291 VPGGSAGRRLQ 301 >gi|315587072|gb|ADU41453.1| PP-loop family protein [Helicobacter pylori 35A] Length = 253 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNIQA 242 >gi|317182435|dbj|BAJ60219.1| hypothetical protein HPF57_1145 [Helicobacter pylori F57] Length = 253 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|222530555|ref|YP_002574437.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222457402|gb|ACM61664.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 235 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 90/237 (37%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K + AI+VD Sbjct: 5 FSKVRKAVEDF-NMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYP-KKFEVVAITVDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D+RS + + +P + + R R++ FV+++ K F ++ + Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKNLKQFHPATKDLVFNAIKRNI 230 >gi|218883803|ref|YP_002428185.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] gi|218765419|gb|ACL10818.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] Length = 339 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 97/243 (39%), Gaps = 37/243 (15%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++ R L HI+VAVSGG DS+ LL LH + R + +A+ VD Sbjct: 31 FEKKVKKTIRKYRMLGKNEHIIVAVSGGKDSIALLHVLHKL--SRKMPGWRVTAVLVDEG 88 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREA-------------R 106 ++ + V + ++ ++ + +VS+K + R R Sbjct: 89 IKGYREKTVENLVAYAAKNKVDYHIVSFKEYIGASLDEIVEKGRARGLPYLPCSYCGVFR 148 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI- 165 ++++ A+ + T+I TAH DD ++T M + +K + + I + +I Sbjct: 149 RYVLNKAARRLGGTVIATAHNLDDVIQTFLMNIISNSVDK---IYKLTPVISDEEGGFIK 205 Query: 166 -SRPFLRCRREDIRSFLLQRNI--------SWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216 +PF ++ + L + + E + RF +R+ + +++ Sbjct: 206 RIKPFYTVLEKESALYALLNGLIEPEYVQCPYAE----YNIRFT---IRKLINELEDKHP 258 Query: 217 YLK 219 +K Sbjct: 259 GVK 261 >gi|154495895|ref|ZP_02034591.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC 29799] gi|150274778|gb|EDN01834.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC 29799] Length = 257 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 17/239 (7%) Query: 1 MFLSPIESVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 M + VR V ++ P I V VSGG DS+ LL L + + A + Sbjct: 1 MNTKLLSYVRRCVEDYDMIKPGDRIAVGVSGGKDSITLLAGLAGLRTFYPVP-FTVEAFT 59 Query: 58 VDHCLRETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYAL 109 +D + + + V++ C L + ++++ + + + + + + R Sbjct: 60 LDMG-HVDGGEGMDFTPVAEFCKELDVPYTILPSEIHHIIFDLRKEKNPCSMCAKMRRGA 118 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + I H FDD +ET ++ +G T L ++ RP Sbjct: 119 LHNALMDHGIHKIALGHHFDDAVETFFLSLF----YEGRISCFQPVTYLDRTDIVQIRPL 174 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L IR+ + +P D +R ++ VR +D LK + ++ Sbjct: 175 LYLSEASIRTIAAKEGYPVVHNPCPADGFTKRQEIKELVRSLDKQYPGLKQRVLGAMQR 233 >gi|15835107|ref|NP_296866.1| hypothetical protein TC0489 [Chlamydia muridarum Nigg] gi|270285278|ref|ZP_06194672.1| hypothetical protein CmurN_02488 [Chlamydia muridarum Nigg] gi|270289294|ref|ZP_06195596.1| hypothetical protein CmurW_02553 [Chlamydia muridarum Weiss] gi|301336674|ref|ZP_07224876.1| hypothetical protein CmurM_02540 [Chlamydia muridarum MopnTet14] gi|7190530|gb|AAF39335.1| conserved hypothetical protein [Chlamydia muridarum Nigg] Length = 259 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S I + L HI VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 19 SLIRKALYTYAMLEKHTHIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK++ AT + Sbjct: 78 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDAAKSVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + E IR F + Sbjct: 137 FGHHRDDVIQTALMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEELIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 SG 194 >gi|217034263|ref|ZP_03439681.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10] gi|216943323|gb|EEC22785.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10] gi|261838507|gb|ACX98273.1| hypothetical protein KHP_1079 [Helicobacter pylori 51] gi|261839907|gb|ACX99672.1| hypothetical protein HPKB_1114 [Helicobacter pylori 52] gi|297380364|gb|ADI35251.1| Hypothetical protein HPV225_1210 [Helicobacter pylori v225d] Length = 253 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|188527970|ref|YP_001910657.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470] gi|188144210|gb|ACD48627.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470] gi|308063965|gb|ADO05852.1| hypothetical protein HPSAT_05705 [Helicobacter pylori Sat464] gi|317177929|dbj|BAJ55718.1| hypothetical protein HPF16_1121 [Helicobacter pylori F16] gi|317180912|dbj|BAJ58698.1| hypothetical protein HPF32_1116 [Helicobacter pylori F32] Length = 253 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|121713738|ref|XP_001274480.1| PP-loop family protein [Aspergillus clavatus NRRL 1] gi|119402633|gb|EAW13054.1| PP-loop family protein [Aspergillus clavatus NRRL 1] Length = 580 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 49/323 (15%), Positives = 92/323 (28%), Gaps = 57/323 (17%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WK 90 M L + + + ++ +A VDH RE + E R V+ + L + ++ W Sbjct: 1 MALAYLCKQLETQKLVPDLRVTAFVVDHKAREESSREARTVAGWLADLGLDAQILELEWP 60 Query: 91 NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS---QRDYAEKG 147 +S + AR R+ + + ++ H DD +ET R R G Sbjct: 61 SSANVSAFETHARRLRFQALGRACADRDIPALLMGHHQDDNVETTLWRLSCGARGAGLAG 120 Query: 148 M----------GLSGMCDTILYD------------------------------------- 160 + GL G+ ++ Sbjct: 121 IPAVARIPECHGLYGVSESGSRRTLLAGRGPAPQEEKEHGDSSTTSTTSSGKDGHRHDRI 180 Query: 161 ----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA 215 + I RP L + + + + + DP+N D R +R + L Sbjct: 181 TMAAGGILICRPLLAFPKSALLATCHAHRVPFVSDPTNFDPTLTPRNAIRALLASSALPR 240 Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC 275 R L + S++ + ++D L + AA Sbjct: 241 ALHPPSILSLTRASHALLDTALEHSNALLRQCSLLDFNAAAASMDIAFPGPLTPLPAAAA 300 Query: 276 GGQISLPGYRSMERVMLFLKSGK 298 QI R + ++ Sbjct: 301 DPQIHALTLRRITDLIAPHPQNH 323 >gi|291277171|ref|YP_003516943.1| PP-loop family protein [Helicobacter mustelae 12198] gi|290964365|emb|CBG40215.1| Putative PP-loop family protein [Helicobacter mustelae 12198] Length = 254 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 17/176 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K +F A+++ + L ++ Y++++C Sbjct: 27 GDKVLLGLSGGKDSILLACILERMQRHAPF-KFEFKAVTIHYGL----GEDFSYLTEICQ 81 Query: 79 RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 R I H + + + + + R + AK + + AH DD Sbjct: 82 RQGIPHEIYHTSIAETIREKRREGSSYCSFCSRMRRGALYNKAKELGYNKVAIAHHLDDA 141 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 E+ +M + + L M + + + RP + R F+ +NI Sbjct: 142 AESFFMNLTYNGS-----LRSMPPIYRAENGIQVIRPLIHIRERQSIDFVQSQNIK 192 >gi|145296694|ref|YP_001139515.1| hypothetical protein cgR_2599 [Corynebacterium glutamicum R] gi|140846614|dbj|BAF55613.1| hypothetical protein [Corynebacterium glutamicum R] Length = 297 Score = 119 bits (299), Expect = 9e-25, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 125/328 (38%), Gaps = 43/328 (13%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + ++VR +++ H+ + +SGG DS+ L+ A+ + S + +AI +DH L Sbjct: 1 MELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHNL 48 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + + + A ++V P G+ AAA A I Sbjct: 49 QAGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDEI 102 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AHT DDQ ET + R +GM D L I RP L RR + Sbjct: 103 WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGACV 155 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234 + + DP N DD F RV +R V + + L L ++ + V V Sbjct: 156 ELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGDV 215 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294 + L +A++ + + +L LR + +++R++ Sbjct: 216 E---KRRLEWQDGFPVALAGEPTGLRRRMLADFLRGEGIAVSSRK----LAAIDRLLTDW 268 Query: 295 KSG---KRGCVSIGRVVIDRRANFLWIT 319 + G GR+ + R++ L IT Sbjct: 269 RGQGGVAVGKSDNGRLEVVRQSGKLKIT 296 >gi|152993337|ref|YP_001359058.1| hypothetical protein SUN_1754 [Sulfurovum sp. NBC37-1] gi|151425198|dbj|BAF72701.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 265 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 16/198 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L I R + +LV +SGG DS+ L+ L + F + +F A +V + Sbjct: 18 LLKVIGKTNAEFRLIGEGDRVLVGLSGGKDSLALVHGLKHIQRHAPF-RFEFEACTVKYG 76 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHA 114 + + D ++S C I H+V +S + + + R + A Sbjct: 77 MPDEHYD---FLSKHCEEYGIKHTVYDTNIFEISHNTIRENSSFCSYFSRMRRGALYTFA 133 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + H FDD +E+ +M + + + + RP ++ R Sbjct: 134 EQGGFNKVALGHHFDDTVESFFMNMFYNGTMRALAPIYKTG-----RGFHLIRPLIQARE 188 Query: 175 EDIRSFLLQRNISWCEDP 192 +R+F N+ D Sbjct: 189 SQLRAFADDNNLQVIGDE 206 >gi|168182078|ref|ZP_02616742.1| PP-loop family protein [Clostridium botulinum Bf] gi|182674947|gb|EDT86908.1| PP-loop family protein [Clostridium botulinum Bf] Length = 249 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKVALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + P D + R ++ + ++ Sbjct: 187 MVKKYNLPVVKSPCPEDKKTTREEMKNLMFKLE 219 >gi|163814067|ref|ZP_02205459.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759] gi|158450516|gb|EDP27511.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 15/222 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I + +SGG DS+ LL A+ + + AI+VD E + Sbjct: 18 NMISPGDRIAIGISGGKDSLTLLYAMAKLKKFYPIP-FELEAITVDLGFEGFDTSE---L 73 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + C L + +SV + + + ++ + R ++ A ++ I AH Sbjct: 74 REYCESLDVRYSVCKTQIGEIIFDYRKESNPCSLCSRMRKGAFNDCAVSLGCNKIAYAHH 133 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +++ M +G + T L + + RP + +IR+F + Sbjct: 134 KDDVIDSFLMSML----YEGRIHTFSPVTHLEKTGVTLIRPLIYVLEGEIRAFARANALP 189 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 C++P D +R + + ++ + +K + F + Sbjct: 190 VCKNPCPADGVTKRQESKDIIDELKVRVPDVKDRIFSSIEGA 231 >gi|78777588|ref|YP_393903.1| hypothetical protein Suden_1391 [Sulfurimonas denitrificans DSM 1251] gi|78498128|gb|ABB44668.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM 1251] Length = 260 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 17/205 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S + + ILV +SGG DS+ L+ AL R+ K +F A+++ + + Sbjct: 18 MSKLGKTNALFNLIEEGDKILVGLSGGKDSLTLIHALKE-QQRRAPFKFEFIAVTISYGM 76 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAK 115 E + C +I + V ++ + + + R + A+ Sbjct: 77 GEN----YEKLKAHCKEHKIDYEVYDTNIYDIAEDKIRKNSSFCSFFSRMRRGSLYSAAQ 132 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD E+ +M + L + D + + RP + R Sbjct: 133 KYGCNKVALGHHMDDAAESFFMNFIYNGQ-----LRSLAPKYKADRGVIVIRPLIEMRER 187 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE 200 + +F+ + NI D + RF+ Sbjct: 188 QLEAFVRENNIETIGDEACPSMRFD 212 >gi|147679000|ref|YP_001213215.1| ATPase [Pelotomaculum thermopropionicum SI] gi|146275097|dbj|BAF60846.1| predicted ATPase [Pelotomaculum thermopropionicum SI] Length = 250 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 15/216 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V +SGG DS LL ALH ++S + + + A+ VD ++ + + C Sbjct: 25 AGDRVAVGMSGGKDSTSLLHALH-LISRSAPVRFELEAVFVDLGW----PADISLLEEFC 79 Query: 78 SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ VV ++ A R A + + H DD Sbjct: 80 RLRNVSLHVVKTGIAEIVFEARKGENPCALCAHLRRGAFHGKALELGCNKVALGHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET +M G + T L L + RP + EDIR+++ + + Sbjct: 140 IETFFMSLF----YTGQLRTFSPCTFLDRTGLTMIRPLVYLPAEDIRTWVEMEGLPAITN 195 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P + +R R V + LKM+ L+ Sbjct: 196 PCPASGKTKRQEARELVAWLAGRYPDLKMRFLTALQ 231 >gi|323140469|ref|ZP_08075397.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] gi|322415037|gb|EFY05828.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067] Length = 267 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 23/246 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRY 72 L ILV +SGG DSM L L + S + +V+ A+ E Sbjct: 26 LQPGDRILVGLSGGKDSMLLTAMLAEI-KKYSPIPFDLACYTVNGMFAPNFPKAELEA-- 82 Query: 73 VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C++ + H K R A + A+ + + AH Sbjct: 83 ---FCAQFGLTHYSDDVDVMAAHEKKGGSPCFTCAYFRRAATNRRAQELGFNKVALAHHN 139 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET +M + + + T L + + RP L R ++IR + + + Sbjct: 140 DDAVETFFMNLVTSGQLR----TFLPVTPLSRSGITVLRPLLYYREQEIRELVAKLGLKP 195 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV------AMLIPKYL 242 ++P D R ++ + +D + +R + L+ K+ Sbjct: 196 IKNPCPYDGHTMRQDIKEHIAALDAQYPEIYEHLAAAMRDSDRQELWPPKPGKELLQKFH 255 Query: 243 TVHMRS 248 T R Sbjct: 256 TFWGRG 261 >gi|237753368|ref|ZP_04583848.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] gi|229375635|gb|EEO25726.1| conserved hypothetical protein [Helicobacter winghamensis ATCC BAA-430] Length = 259 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 26/209 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F +F A++VD+ R E Y+ + C Sbjct: 30 GDKVLLGLSGGKDSILLATLLARLKRYAPF-NFEFKALTVDYG-RGG---EYEYIFEYCE 84 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I + + N + + + R + A + AH DD Sbjct: 85 KHGIPYELYRTDIYKILEENKREGSVYCSFCSRMRRGALYTKALEGGYNKLALAHHLDDA 144 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ M + A L M + +++ RP + R I F+ + NI D Sbjct: 145 AESFMMNLTYNGA-----LRSMPPIYKAENGIFVIRPLIFVRERQIIDFIAKNNIYIAPD 199 Query: 192 PSN------TDDR--FERVRVRRFVRDID 212 N DD+ F R + ++ +++++ Sbjct: 200 -CNCPIMWQKDDKRPFAREKTKQMLKEME 227 >gi|116753888|ref|YP_843006.1| PP-loop domain-containing protein [Methanosaeta thermophila PT] gi|116665339|gb|ABK14366.1| PP-loop domain protein [Methanosaeta thermophila PT] Length = 326 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 21/229 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + R F R + VA+SGG DS LL L + S R I+ A+ VD + Sbjct: 36 RETLRTYRIFSR----GGRVAVALSGGKDSSVLLYTLKRIFSHRR--DIELIALMVDEGI 89 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------RYALIS 111 +D ++ + + RL + H +S++ T A R+ R L++ Sbjct: 90 SGYREDTLQNAAALADRLDVPHITLSFREEFGITIDEIAERDLHQAPCTYCGVMRKHLLN 149 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A+ +NA + T H DD+ +T+ + R ++ L + + ++ +P R Sbjct: 150 KRARELNAIALATGHNLDDEAQTILLNYLRGDVDR---LFRLLPKRPKEGLVYRIKPLRR 206 Query: 172 CRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++ + + I R R+ V+ + +I+ K Sbjct: 207 IPEREVAIYAMIHGIFPRGHGSCPNVPRAMRLEVKNILNEIEARHPGTK 255 >gi|312621376|ref|YP_004022989.1| PP-loop domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201843|gb|ADQ45170.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 235 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K + AI+VD Sbjct: 5 FSKVRKAVEDF-NMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYP-KKFEVVAITVDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIHCFSPKTYLDRTQITTIRPMIYLK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D+RS + + +P + + R R++ FV+ + K F ++ + Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230 >gi|322707722|gb|EFY99300.1| PP-loop family protein [Metarhizium anisopliae ARSEF 23] Length = 653 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 18/164 (10%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52 F +E+V RF P + +A+SGG DSM + +++ KI Sbjct: 20 FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLIRAHRGIKIADNPTES 79 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103 + VDH LR + E V+ +L + ++WK+ + + AR Sbjct: 80 AFGVIVDHRLRPESTLEAVKVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNMESVAR 139 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 RY ++ + +NAT + AH DDQ ETV MR + +G Sbjct: 140 TMRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRR----FVRDIDLH 214 D + I RP L ++ + + I W EDP+N D R +R + Sbjct: 281 DGGIMIYRPLLEFDKDRLIATCEANKIKWFEDPTNADPTLTPRNAIRHMDHSLLPPELRK 340 Query: 215 ALYLKMKKFQDLRVKVNNAVA 235 L M + R +V A A Sbjct: 341 EAILDMSREAKRRTRVEEAEA 361 >gi|224000705|ref|XP_002290025.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975233|gb|EED93562.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 999 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 31/302 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 +V++SGG DSM + AL + + ++ I +D+ R + E YV Sbjct: 530 IVSLSGGVDSMVIASALAYLRDTEAARCNLKPDKVLRIICIHIDYANRPESGAEAAYVGR 589 Query: 76 VCSRLRIAHSVVSWKNSKPQTGL----MAAAREAR---YALISEHAKTINAT------LI 122 C ++ ARE R Y A+ I + Sbjct: 590 YCHQIGAQFVCRKIDEVTRGVNARDDYERIAREIRFGLYRQYCGEARRIGGQESDIGIGV 649 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 M H D E V + + + LSGM ++ + + + RP L + I + Sbjct: 650 MLGHHRGDLRENVISNAHKGCGP--LDLSGMT-SVSKNDGVTLFRPLLPLEKTFIFDYAH 706 Query: 183 QRNISWCEDPS-NTDDRFE-RVRVRRFVRDI----DLHALYLKMKKFQDLRVKVNNAVAM 236 + + +D + N R + R R+ + +I + L ++ D R + V Sbjct: 707 TFGVPYFKDTTPNWSTRGKLRNRLLPLLEEIYGEGSMDNLSSLAEESDDARALIQQTVMG 766 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296 + + I+ + + ++LR + G + +S+E + + S Sbjct: 767 PFMEKVKYSTMGIVFETIPWKDCGLFFWKFVLR--NVLHGAGRGMFSDKSVESFLDRIAS 824 Query: 297 GK 298 K Sbjct: 825 TK 826 >gi|20090822|ref|NP_616897.1| hypothetical protein MA1974 [Methanosarcina acetivorans C2A] gi|19915889|gb|AAM05377.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 302 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 26/276 (9%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E ++ VR S+ I VA+SGG DS L +H +L +R I+ A+S Sbjct: 28 FIEDVERKIKLTVRKDYSIKKNDVIAVALSGGKDSSVALYVMHKILGNR--PDIQIVAVS 85 Query: 58 VD---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--RE-------- 104 +D H R + + + L + H + S+K+ T AA RE Sbjct: 86 IDEGIHGYRPHS---LELAKKLTETLGVRHIIKSFKDEHGVTMDELAAMDREKGTCSYCG 142 Query: 105 -ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R ++++ A I AT ++T H DD+ +T+ + R E+ + + + + Sbjct: 143 VLRKSILNRVALEIGATKLVTGHNLDDEAQTILLNHFRGDMER---MVRLAPPAAVEGLV 199 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P +++ + L ++ R +R + + + K Sbjct: 200 LRAKPLRNIPEKEVALYALINSLPVDFSECPYAGEALRGEIRELLNNFETGHPGTKYSLL 259 Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 + V L P + ++DI Sbjct: 260 RGFDKLVGALAKELPPAKIEKCRICGDTCTEDICQA 295 >gi|207108367|ref|ZP_03242529.1| hypothetical protein HpylH_01795 [Helicobacter pylori HPKX_438_CA4C1] Length = 236 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 25/230 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L + + + IL+ +SGG DS+ L L + F K F A++V + L Sbjct: 10 LHIVGKTNAAYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115 ++++++SD+C I H ++ + + + ++ + R + A Sbjct: 69 ----GEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKAL 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AH DD +E+ +M + + L M + L + RP ++ R Sbjct: 125 EEGYNKVAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREA 179 Query: 176 DIRSFLLQRNISWCED-------PSNTDDRFERVRVRRFVRDI-DLHALY 217 F+ +NI D P++ R+ + F++++ +LH + Sbjct: 180 SSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF 229 >gi|108796880|ref|YP_636178.1| hypothetical protein RF62 [Pseudendoclonium akinetum] gi|122217891|sp|Q3ZJ89|TILS_PSEAK RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|56159578|gb|AAV80602.1| hypothetical protein RF62 [Pseudendoclonium akinetum] Length = 600 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 9/148 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 ++ IE F + + +L+A SGG DS LL + + F K A+ +HC Sbjct: 10 LINFIEKSNLFTTNKIRDKKLLIAFSGGQDSSCLLTIFYILSKKWGF---KLGAVYCNHC 66 Query: 62 L--RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + D I V NS+P AR+ RY+ +K + Sbjct: 67 WTDSPQSSLSA---FDTLQMFDIPFYFVESPNSEPMK-PEQKARDWRYSSFYTISKWEDY 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKG 147 ++T H+ D +ETV R KG Sbjct: 123 DFVLTGHSLSDCVETVLFNLFRGSGLKG 150 Score = 46.1 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%) Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 +++ + RP ++ RE + F I D SN D R +R+ + + Sbjct: 507 KNVDFIVFRPLIKITRETLFLFSNNLKIPIYYDKSNKDLNITRNYIRKVLVPL 559 >gi|317014572|gb|ADU82008.1| hypothetical protein HPGAM_06125 [Helicobacter pylori Gambia94/24] Length = 253 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|307637856|gb|ADN80306.1| tRNA-Cytosine32--2-thiocytidine synthetase [Helicobacter pylori 908] gi|317011386|gb|ADU85133.1| hypothetical protein HPSA_05805 [Helicobacter pylori SouthAfrica7] gi|325996453|gb|ADZ51858.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori 2018] gi|325998042|gb|ADZ50250.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori 2017] Length = 253 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|256004136|ref|ZP_05429120.1| PP-loop domain protein [Clostridium thermocellum DSM 2360] gi|255991884|gb|EEU01982.1| PP-loop domain protein [Clostridium thermocellum DSM 2360] Length = 218 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V VSGG DS+ LL+AL + + K + AI++ + E ++ V ++C Sbjct: 5 GDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTMGIGE---VDLSPVRELCE 60 Query: 79 RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 R+ ++++V + + + R + AK + + AH DD + Sbjct: 61 RIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTAKRLGCNKVALAHHMDDVI 120 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET + +G + T L L++ RP + + ++ F+ NI +P Sbjct: 121 ETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 176 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 + +R ++ + ++ +K F ++ Sbjct: 177 CPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 212 >gi|322378687|ref|ZP_08053120.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1] gi|322380182|ref|ZP_08054417.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5] gi|321147397|gb|EFX42062.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5] gi|321148904|gb|EFX43371.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1] Length = 256 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 17/176 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + + F F A +V + L K+++ ++SD+C Sbjct: 26 GDRILIGLSGGKDSILLSCLLARMQAHAPF-NFTFQAATVHYGL----KEDLAWLSDLCV 80 Query: 79 RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H+++ + + Q+ + R ++ +A + AH DD Sbjct: 81 EQNIPHTILYTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALEHGYNKLALAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +E+ +M + + L M + L++ RP + R F+ +NI Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIP 191 >gi|330508540|ref|YP_004384968.1| hypothetical protein MCON_2761 [Methanosaeta concilii GP-6] gi|328929348|gb|AEB69150.1| conserved hypothetical protein TIGR00269 [Methanosaeta concilii GP-6] Length = 308 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 24/210 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + I VAVSGG DS LL AL VL+++ ++ A++VD + D + Sbjct: 42 RMIEKGERIAVAVSGGKDSTALLFALSRVLAEKE---VEMVALTVDEGIAGYRDDTIVAA 98 Query: 74 SDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALISEHAKTINATLIM 123 + ++ + ++S++ + R ++ AK++ T + Sbjct: 99 KRIARQMGVEQVIISFQEEYGWSLDEMVVGAEVAPCTYCGVFRKNALNCAAKSLGVTKLA 158 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ ++V M + E+ L + +P ++I + + Sbjct: 159 TGHNQDDEAQSVMMNYLKGDMER---LMRFRPRREQPGLIPRIKPLRDIPEKEIALYAMV 215 Query: 184 RNISW--CEDPSNTDDRFERVRVRRFVRDI 211 I + E P + R+ +R VRD+ Sbjct: 216 NGIYFESRECP------YARLSLRADVRDM 239 >gi|148272021|ref|YP_001221582.1| putative cell cycle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829951|emb|CAN00876.1| putative cell cycle protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 341 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 120/324 (37%), Gaps = 18/324 (5%) Query: 8 SVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +VR + L + +LVA+SGG+DS+ L A DH L++ Sbjct: 18 AVREALAGLDPASSGPVLVALSGGADSLALAAAAAFEGPRAGVAAGAVVV---DHGLQDG 74 Query: 66 AKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +D L +A VV + + +G AAAR ARYA + + + ++ Sbjct: 75 SAAVAARAADAARALGLAPVVVTRVRVAPGASGPEAAARAARYAAFDDALRETGSRALLL 134 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQ 183 AHT DDQ ETV + R L GM + + RP L R R+ Sbjct: 135 AHTLDDQAETVLLGLARGSGA--TSLHGMAASTPARAADAVYLRPLLGIRAAVTRAACAD 192 Query: 184 RNISWCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 + + DP N D + RVRVR + AL + ++ + + A Sbjct: 193 QGLDPWRDPHNADPAYARVRVRHEALPVLERELGPGIAEALARTADQLREDDDALEHFAA 252 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 +I + I +L L L+R AA L +E L Sbjct: 253 EMIEEIADHAEAGISLEVASLLAAPPALRHRLIR-LAAREEFAAHLSRTHVLEVARLVTD 311 Query: 296 SGKRGCVSIGRVVIDRRANFLWIT 319 +G V + V + R+ + ++ Sbjct: 312 WHGQGPVDLPGVRVVRKDGLIVLS 335 >gi|91772989|ref|YP_565681.1| hypothetical protein Mbur_0991 [Methanococcoides burtonii DSM 6242] gi|91712004|gb|ABE51931.1| PP-loop family protein [Methanococcoides burtonii DSM 6242] Length = 302 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 20/233 (8%) Query: 2 FLSPIE-SVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E V+ +R I VA+SGG DS+ LL LH + R I+ A++ Sbjct: 28 FIEDVERKVKLTIRKQYKIEKGDIIAVALSGGKDSVVLLYLLHKIFGVRR--DIEIVALT 85 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREAR 106 +D + ++ + + S L I H V S+K+ + + G + R Sbjct: 86 IDEGIAGYREETLAKARKLTSELGIRHIVRSFKDEYDKTLDELTAQERKLGACSYCGVLR 145 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 +L+++ A I A + T H DD+ +T+ M ++ + + + + + Sbjct: 146 KSLMNKIANEIGANKLATGHNLDDEAQTIMMNHLGGDVDR---MIRLSPPREIEGLVLRA 202 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +P + +++ + + + + R VR + + ++ K Sbjct: 203 KPLRKVPEKEVALYAIVNELPFDMSECPYAHEALRGEVRDMINEFEVRHPGTK 255 >gi|126329025|ref|XP_001378316.1| PREDICTED: similar to cancer-associated gene protein [Monodelphis domestica] Length = 444 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 79/216 (36%), Gaps = 19/216 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L +L R + ++VD + + V Sbjct: 92 RLLPPGAVVAVGASGGKDSTVLAHVL-QILDARHSLGLDLRLVAVDEGIGGYRDAALAAV 150 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------------RYALISEHAKT 116 +R R+ +VV++ + AR A R + E A+ Sbjct: 151 RRQAARWRLPLTVVAYVELFGGWTMDEVARRAAQEPGRARACCTFCGVLRRRALEEGAQR 210 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + AT I+T H DD ETV M R A + + G + L RP +++ Sbjct: 211 VGATHIVTGHNADDMAETVLMNFLRGDAGR-LARGGTLGSPGEGGALPRCRPLQFASQKE 269 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 I + + + + + R VR ++ ++ Sbjct: 270 IVLYAHFQELDYFSEECVYAPEAFRGHVRDLLKALE 305 >gi|308062463|gb|ADO04351.1| hypothetical protein HPCU_06025 [Helicobacter pylori Cuz20] Length = 253 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 17/180 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 >gi|317012963|gb|ADU83571.1| hypothetical protein HPLT_05905 [Helicobacter pylori Lithuania75] Length = 253 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 17/180 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 >gi|238926101|ref|ZP_04657861.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531] gi|238885991|gb|EEQ49629.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531] Length = 260 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + HIL+ VSGG DS+ L AL +L +R +A +V+ Sbjct: 10 FSKLMRAVVEF-ELIENGDHILIGVSGGKDSIFLTYALA-ILRERLKKDFTIAAFTVN-- 65 Query: 62 LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 D + ++ C L + + VV + + R +++ +A Sbjct: 66 --PQFDDPFDTDVIAAFCKSLDVPYEVVDVDIAGAIAEQEEKSPCFTCAFFRRGVVNRYA 123 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + AH DD +ET M G + T L + + RP + R Sbjct: 124 KEHHMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLDKTGITVIRPLVYFRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++I + + P + R V+ + + L +R Sbjct: 180 QEIIDAIPLHGFTPIPSPCPHNGNTTRQTVKELIARLSAENPSLYSHLAAGMR 232 >gi|315924540|ref|ZP_07920759.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622070|gb|EFV02032.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 237 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 18/235 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LSP+ + I + +SGG DSM LL A+ + AI++D L Sbjct: 6 LSPMRRAIQQFDMISPGDRIAIGISGGKDSMALLAAMARYQKFSPIP-FELEAITLDAGL 64 Query: 63 RETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114 + + + ++D C R+ + +++ + + + A R + + Sbjct: 65 -----EGMDFSPIADYCRRINVPYTIKKSAIAKVVFDIRQEKNPCALCARMRRGALHNLS 119 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + I H DD +ET ++ + + M T L + + RP + + Sbjct: 120 KELGCNKIALGHHSDDVVETFFLSLLYESRIN----TFMPVTYLDRKKITLIRPLVFVKE 175 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 +DI R++ + D +R V+ + + L + ++ K Sbjct: 176 KDIIFDKTCRHLPLIQSTCPADGHTKRQTVKNMLEQLKKEIPDLNPRIMSAIQNK 230 >gi|89898294|ref|YP_515404.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56] gi|89331666|dbj|BAE81259.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56] Length = 247 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 100/226 (44%), Gaps = 20/226 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I+VA+SGG DS+ LL+ L ++ S R F ++ A+++ ++ +Y+++ Sbjct: 31 LENHTKIVVALSGGKDSLTLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGSEVSQKYLAN 89 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C ++++ + ++ P+ + + R L+ + AK + A+ + H DD ++T Sbjct: 90 ICDKIQVPFTSIA-SPYSPEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTA 148 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 M + + G+ + + +D + I RP + IR F + Sbjct: 149 LMNLL--HKAEFAGMLPVLGMVHFD--ITILRPLILTPESWIRKFSKESG---------- 194 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 F RV R V + +K +++ + + +A+ I ++ Sbjct: 195 ---FARVTCRCPVVSL-RTKTEAALKSLEEVFPQARHNIALAIEQH 236 >gi|182418849|ref|ZP_02950113.1| ExsB family protein [Clostridium butyricum 5521] gi|237668843|ref|ZP_04528827.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377302|gb|EDT74864.1| ExsB family protein [Clostridium butyricum 5521] gi|237657191|gb|EEP54747.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 241 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 34/223 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---------HCLRETAKDE 69 I V +SGG DS+ LL L+S S K + AI+++ H L Sbjct: 21 GDKIAVGLSGGKDSLTLLHLLNSY-KKFSPQKFELIAITLNPGGVDNTPLHKL------- 72 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIM 123 C L I + K + + + R + +AK + + Sbjct: 73 -------CKDLEIPFHEIQTDIQKIVFEIRKENNPCSLCAKLRRGALHNNAKELGCNKVA 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD +ET+ + + +G T + N+ + RP + I++ + + Sbjct: 126 LGHHKDDAIETLMLSL----SYEGRINCFSPKTFMDKENITLIRPMVYIEEASIKNIVNK 181 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 N +P D + R ++ + +++ K F L Sbjct: 182 YNFPVIHNPCPVDKKTRREDMKNLIFELNGRIPGFKNNLFGAL 224 >gi|289525255|emb|CBJ14731.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2] gi|296434803|gb|ADH16981.1| hypothetical protein E150_01125 [Chlamydia trachomatis E/150] gi|296435732|gb|ADH17906.1| hypothetical protein G9768_01115 [Chlamydia trachomatis G/9768] gi|296436656|gb|ADH18826.1| hypothetical protein G11222_01110 [Chlamydia trachomatis G/11222] gi|296437592|gb|ADH19753.1| hypothetical protein G11074_01115 [Chlamydia trachomatis G/11074] gi|296438523|gb|ADH20676.1| hypothetical protein E11023_01115 [Chlamydia trachomatis E/11023] gi|297140091|gb|ADH96849.1| hypothetical protein CTG9301_01115 [Chlamydia trachomatis G/9301] Length = 254 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 19 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 78 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F + Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 SG 194 >gi|322807607|emb|CBZ05182.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum H04402 065] Length = 249 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + D + R ++ + ++ Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|269957764|ref|YP_003327553.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269306445|gb|ACZ31995.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 384 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 92/241 (38%), Gaps = 35/241 (14%) Query: 6 IESVRFFVRS---------LVYPAHILVAVSGGSDSMGLLIALHS------VLSDRSFGK 50 + +VR VR+ L +LVA SGGSDS+ L A+ Sbjct: 8 VLAVRVAVRATLADLVAAGLGPGDLVLVACSGGSDSLALAAAVAHESRRVGRSVRSRGFA 67 Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYA 108 ++ +A+ VDH L+ + D + C L + VV TGL AAR ARYA Sbjct: 68 VRAAAVVVDHGLQPGSDDVAAAAAQQCRGLGLDPVVVRRVVVGHDGVTGLEDAARRARYA 127 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A + A ++ HT DDQ E V + R + + + RP Sbjct: 128 AFDDVAASTGAVAVLLGHTLDDQAEQVLLGLARGSGARTLA-------GIPPARGIYRRP 180 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNT-----DDRF------ERVRVRRFVRDIDLHALY 217 L RR +R+ + + W +DP+N D R RVR V + L Sbjct: 181 LLGLRRAQLRAACAAQGLDWWDDPTNDLPPSSDRDMPHGPVPLRTRVRHEVLPLLEDVLG 240 Query: 218 L 218 Sbjct: 241 P 241 >gi|255311017|ref|ZP_05353587.1| hypothetical protein Ctra62_01120 [Chlamydia trachomatis 6276] gi|255317318|ref|ZP_05358564.1| hypothetical protein Ctra6_01115 [Chlamydia trachomatis 6276s] gi|255506792|ref|ZP_05382431.1| hypothetical protein CtraD_01130 [Chlamydia trachomatis D(s)2923] gi|297748347|gb|ADI50893.1| TtcA [Chlamydia trachomatis D-EC] gi|297749227|gb|ADI51905.1| TtcA [Chlamydia trachomatis D-LC] Length = 283 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 48 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 106 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 107 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 165 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F + Sbjct: 166 FGHHRDDVVQTTLMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKE 221 Query: 184 RN 185 Sbjct: 222 SG 223 >gi|115387515|ref|XP_001211263.1| predicted protein [Aspergillus terreus NIH2624] gi|114195347|gb|EAU37047.1| predicted protein [Aspergillus terreus NIH2624] Length = 570 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 86/299 (28%) Query: 33 MGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR--IAHSV-- 86 M L + ++ +A VDH RE + E R V+ + + + Sbjct: 1 MALAHLCKQWEQAQRNTDDDLRVTAFVVDHKAREESSREARMVAQYLQDIGSSLPSLIKN 60 Query: 87 ----------------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +SW P T AR R+ + + + ++ H DD Sbjct: 61 RSEELTAAGVTSQILELSWPPDTPTTAFETHARRLRFQALGKACRDHQIEALLMGHHQDD 120 Query: 131 QLETVYMRS---QRDYAEKGM----------GLSGMCDTILYD----------------- 160 +ET R R G+ GL G+ ++ + Sbjct: 121 NVETTLWRLCTGARGGGLAGIPSMTRIPECHGLYGVSESGAHTTLQLKRMRALSFHVSPT 180 Query: 161 ---------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 + + RP L + + + + NI + DP+ Sbjct: 181 NELHVLPDDTTNAIDGDIPATPVLMSTGGILVCRPLLDFPKARLLATCHENNIPYVSDPT 240 Query: 194 NTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N D R +R + R + ++ ++ Q L A L+ + Sbjct: 241 NFDPTLTPRNAIRSLISSRKLPRALQAPSILALIRSSQSLLQHSTTASNQLLQTCEALD 299 >gi|166154427|ref|YP_001654545.1| hypothetical protein CTL0469 [Chlamydia trachomatis 434/Bu] gi|166155302|ref|YP_001653557.1| hypothetical protein CTLon_0464 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335686|ref|ZP_07223930.1| hypothetical protein CtraL_02630 [Chlamydia trachomatis L2tet1] gi|165930415|emb|CAP03908.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu] gi|165931290|emb|CAP06862.1| conserved hypothetical protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 254 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 19 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 78 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F + Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 SG 194 >gi|168185941|ref|ZP_02620576.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str. Eklund] gi|169296152|gb|EDS78285.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str. Eklund] Length = 239 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L++ S + AI++D A + + Sbjct: 18 IQSGDKIAVGLSGGKDSITLLYLLNAY-KRFSPQPFELLAITLD----PGAGADFTEMIR 72 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +C L + + + + + + ++ + R +++HAK + + H + Sbjct: 73 ICKELSVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G + DT L +L I RP + ++I++ + NIS Sbjct: 133 DAIETLLMSMF----YEGRINTFSPDTYLSRSDLHIIRPMIYIDEQNIKTLIKNSNISIV 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 E+P + +R ++ ++ LK L Sbjct: 189 ENPCPANGFTKREYMKNLTYSLEEDIPGLKNNILNSLS 226 >gi|109947003|ref|YP_664231.1| hypothetical protein Hac_0396 [Helicobacter acinonychis str. Sheeba] gi|109714224|emb|CAJ99232.1| conserved hypothetical protein [Helicobacter acinonychis str. Sheeba] Length = 253 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCK 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 DQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|125974666|ref|YP_001038576.1| ATPase [Clostridium thermocellum ATCC 27405] gi|125714891|gb|ABN53383.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Clostridium thermocellum ATCC 27405] gi|316941791|gb|ADU75825.1| PP-loop domain protein [Clostridium thermocellum DSM 1313] Length = 237 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 93/234 (39%), Gaps = 17/234 (7%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +R ++ + I V VSGG DS+ LL+AL + + K + AI++ Sbjct: 6 RLLGQIRRAIQDYNMIQDGDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTM 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114 + E ++ V ++C R+ ++++V + + + R + A Sbjct: 65 GIGE---VDLSPVRELCERIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTA 121 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + AH DD +ET + +G + T L L++ RP + Sbjct: 122 KRLGCNKVALAHHMDDVIETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEE 177 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 + ++ F+ NI +P + +R ++ + ++ +K F ++ Sbjct: 178 KLVKQFVKANNIITVANPCPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 231 >gi|269303137|gb|ACZ33237.1| PP-loop family protein [Chlamydophila pneumoniae LPCoLN] Length = 244 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I+VA+SGG DS+ LL+ L ++ S R F + A+++ Sbjct: 19 SLVRKALYTHTMLANHHKIVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A+ Y++ +C +L I + P+T +AR L+ + AK I A+ I Sbjct: 78 CGAEVNKPYLTRICDQLCIPFRTIP-SPYAPETPECYPCSQARRRLLFQAAKEIGASAIA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T + + + G+ + D + + + I RP + IR F + Sbjct: 137 FGHHRDDLVQTALLNLL--HKAEFAGMLPVLDMVHF--GVTILRPLIFTPEFWIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 NG 194 >gi|153939398|ref|YP_001392642.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|152935294|gb|ABS40792.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|295320627|gb|ADG01005.1| PP-loop family protein [Clostridium botulinum F str. 230613] Length = 249 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIIAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + D + R ++ + ++ Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|67470756|ref|XP_651341.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56468066|gb|EAL45955.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 313 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 21/205 (10%) Query: 2 FLSPIES-VRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E V + L+YP HI++ VSGG DS L L + R K++ ++ Sbjct: 27 FIDRVEKLVHQCIDEFQLIYPTDHIVIGVSGGKDSTALATMLARI-EKRWPSGAKYTLVA 85 Query: 58 VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAARE 104 VD + R+ + + VR++ + L++ ++S+ ++ + Sbjct: 86 VDEGIVGYRDKSLECVRWLQNY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGV 142 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R + + A + A +I T H DD ETV M R + + + + + Sbjct: 143 LRRQCLEKAAIKVGANVIATGHNGDDVAETVLMNFLRGDVARLERCKSLKRELEREDGII 202 Query: 165 ISRPFLRCRREDIRSFLLQRNISWC 189 +PF ++++ + + + Sbjct: 203 RIKPFSLLTQKEVVLYAHYMKLQYF 227 >gi|255348575|ref|ZP_05380582.1| hypothetical protein Ctra70_01145 [Chlamydia trachomatis 70] gi|255503115|ref|ZP_05381505.1| hypothetical protein Ctra7_01155 [Chlamydia trachomatis 70s] Length = 283 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 48 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 106 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 107 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 165 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F + Sbjct: 166 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 221 Query: 184 RN 185 Sbjct: 222 SG 223 >gi|168179056|ref|ZP_02613720.1| PP-loop family protein [Clostridium botulinum NCTC 2916] gi|226950722|ref|YP_002805813.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] gi|182670110|gb|EDT82086.1| PP-loop family protein [Clostridium botulinum NCTC 2916] gi|226842372|gb|ACO85038.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] Length = 249 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -DMDLEPLKFFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + D + R ++ + ++ Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|308183288|ref|YP_003927415.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4] gi|308065473|gb|ADO07365.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4] Length = 253 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + F K F A++V + L ++++++SD+C Sbjct: 26 GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQSIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|296128486|ref|YP_003635736.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109] gi|296020301|gb|ADG73537.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109] Length = 386 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 18/215 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 A +LVA SGG+DS+ L L D G + A+ VDH L++ + D + + Sbjct: 23 PPGATVLVACSGGADSLALAAGLAWEAQD---GGWRAGAVVVDHGLQDGSHDVAQEAAAA 79 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 C RL + V + G AAAR ARYA + A ++AT ++ HT DDQ ETV Sbjct: 80 CRRLGLDPVRVVRVDVGTAGGPEAAARSARYAALDAAADELDATAVLLGHTLDDQAETVL 139 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-T 195 + R E+ L+GM ++ D + + + DP+N Sbjct: 140 LALARGSGER--ALAGMRPVRGRLRRPLLALRRT-----DTEAACADQGLDPWHDPTNGR 192 Query: 196 DDRFE-------RVRVRRFVRDIDLHALYLKMKKF 223 + R RVR V + L + + Sbjct: 193 HPTADVPAGLPLRSRVRTEVLPVLEDVLGPGVAQA 227 >gi|15618181|ref|NP_224466.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|15835796|ref|NP_300320.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|16752779|ref|NP_445047.1| hypothetical protein CP0500 [Chlamydophila pneumoniae AR39] gi|33241603|ref|NP_876544.1| YdaO [Chlamydophila pneumoniae TW-183] gi|4376533|gb|AAD18410.1| PP-Loop Superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189418|gb|AAF38329.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39] gi|8978634|dbj|BAA98471.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236111|gb|AAP98201.1| YdaO [Chlamydophila pneumoniae TW-183] Length = 244 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I+VA+SGG DS+ LL+ L ++ S R F + A+++ Sbjct: 19 SLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A+ Y++ +C +L I + P+T +AR L+ + AK I A+ I Sbjct: 78 CGAEVNKPYLTRICDQLCIPFRTIP-SPYAPETPECYPCSQARRRLLFQAAKEIGASAIA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T + + + G+ + D + + + I RP + IR F + Sbjct: 137 FGHHRDDLVQTALLNLL--HKAEFAGMLPVLDMVHF--GVTILRPLIFTPEFWIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 NG 194 >gi|15604937|ref|NP_219721.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|3328625|gb|AAC67809.1| PP-Loop Superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] Length = 234 Score = 116 bits (292), Expect = 5e-24, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 6/170 (3%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I VA+SGG DS+ LL+ L ++ S R F ++ AI + A Y+S Sbjct: 11 LQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSS 69 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 +C ++++ + + + R L+ + AK + AT + H DD ++T Sbjct: 70 ICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTT 128 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 M + + G+ + D + + + I RP + + IR F + Sbjct: 129 LMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKESG 174 >gi|312792343|ref|YP_004025266.1| PP-loop domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312876293|ref|ZP_07736279.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796939|gb|EFR13282.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|312179483|gb|ADQ39653.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 235 Score = 116 bits (292), Expect = 6e-24, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K AI+VD Sbjct: 5 FSKVRKAVEDF-EMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D+RS + + +P + + R R++ FV+ + K F ++ + Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230 >gi|295101039|emb|CBK98584.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Faecalibacterium prausnitzii L2-6] Length = 263 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 78/227 (34%), Gaps = 30/227 (13%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---------VDHCLRETA 66 L +LV VSGG DS+ L I L + F + A++ VD+ + Sbjct: 24 LAPGDRVLVGVSGGKDSVALTIGLARLRQYLGFP-FEVVAVTLDPQFGGKPVDY-----S 77 Query: 67 KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINAT 120 E + R + + V + + + + + R + A+ + Sbjct: 78 ALEALF-----RRYDVPYEVCRTLIGPIVFDYRNEKNPCSLCAKMRRGALHTAAEELGCN 132 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + H DD +ET YM R +G T L D L + RP L +++R Sbjct: 133 KVALGHHLDDAIETFYMNLWR----EGRIGCFSPVTELSDRGLTLIRPLLLATEQEVRCA 188 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + + + D R + FVR+ + K L+ Sbjct: 189 VKEEGFPIVKSRCPADGVTTREDTKNFVRERCRTDRAFRQKTLHALQ 235 >gi|167385245|ref|XP_001737264.1| ATP-binding domain-containing protein [Entamoeba dispar SAW760] gi|165899992|gb|EDR26462.1| ATP-binding domain-containing protein, putative [Entamoeba dispar SAW760] Length = 313 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 21/205 (10%) Query: 2 FLSPIES-VRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E V + L+YP HI++ VSGG DS L L + R K++ ++ Sbjct: 27 FIDRVEKLVHQCIDEFQLIYPTDHIVIGVSGGKDSTALATMLTRI-EKRWPSGAKYTLVA 85 Query: 58 VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAARE 104 VD + R+ + + VR++ + L++ ++S+ ++ + Sbjct: 86 VDEGIVGYRDKSLECVRWLQEY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGV 142 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R + + A + A +I T H DD ETV M R + + + + + Sbjct: 143 LRRQCLEKAAIKVGANVIATGHNGDDVAETVLMNFLRGDVARLERCKSLKRELEREDGII 202 Query: 165 ISRPFLRCRREDIRSFLLQRNISWC 189 +PF ++++ + + + Sbjct: 203 RIKPFSLLTQKEVVLYAHYMKLRYF 227 >gi|76788939|ref|YP_328025.1| TtcA [Chlamydia trachomatis A/HAR-13] gi|237804562|ref|YP_002888716.1| hypothetical protein CTB_2111 [Chlamydia trachomatis B/TZ1A828/OT] gi|76167469|gb|AAX50477.1| TtcA [Chlamydia trachomatis A/HAR-13] gi|231272862|emb|CAX09772.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT] Length = 254 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 19 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 78 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F + Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 192 Query: 184 RN 185 Sbjct: 193 SG 194 >gi|21325470|dbj|BAC00092.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Corynebacterium glutamicum ATCC 13032] Length = 297 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 36/275 (13%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + ++VR +++ H+ + +SGG DS+ L+ A+ + S + +AI +DH L Sbjct: 1 MELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHNL 48 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + + + A ++V P G+ AAA A I Sbjct: 49 QTGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDEI 102 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AHT DDQ ET + R +GM D L I RP L RR + Sbjct: 103 WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGACV 155 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234 + + DP N DD F RV +R V + + L L ++ + V V Sbjct: 156 ELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGDV 215 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 + L + ++ + + +L LR Sbjct: 216 E---KRRLEWQDGFPVTLAGEPTGLRRRMLADFLR 247 >gi|288559819|ref|YP_003423305.1| PP-loop family protein [Methanobrevibacter ruminantium M1] gi|288542529|gb|ADC46413.1| PP-loop family protein [Methanobrevibacter ruminantium M1] Length = 305 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 19/201 (9%) Query: 2 FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ IE VR ++ + +LVA+SGG DS+ L L+S R I A++ Sbjct: 28 FIESIEKKVRQTIKRENFIDRGDKVLVALSGGKDSVVTLDILNSY---RERHIIDLCAVT 84 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREAR 106 +D + +D V RL I H VVS+K + G R Sbjct: 85 IDEGIAGYREDGVEIAKAHAERLGIPHKVVSFKESFGIDLDEIMAKENHRGSCTYCGVFR 144 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 +I+ A+ AT I T H DD+ + + M E + ++ + I Sbjct: 145 RWIINRAARDFGATKIATGHNLDDETQAILMNYLEGNTENLAKIGPKTESNDELFTVKI- 203 Query: 167 RPFLRCRREDIRSFLLQRNIS 187 +P ++I + + + + Sbjct: 204 KPLREIPEKEIGLYAIAKGLD 224 >gi|326202249|ref|ZP_08192118.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782] gi|325987367|gb|EGD48194.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782] Length = 239 Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 17/235 (7%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR ++ + I V VSGG DSM LL AL + + K + AIS+ Sbjct: 6 RILGQVRRAIQDYNMIEDGDKIAVGVSGGKDSMTLLTALRQLQNFYP-KKFELEAISLTM 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114 + A V + C ++ + +SV + + + R + A Sbjct: 65 GI-GNADYTP--VVEYCKQIGVNYSVEETLIGKIIFEVRNEKNPCSMCANLRRGALHNKA 121 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET+ + +G + T L +L++ RP + Sbjct: 122 KKLGCNKVALGHHRDDAVETLLL----SSFYEGRIHTFSPVTYLDRQDLYLIRPLIYTEE 177 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + I++ + ++ + P + D + +R ++ + ++ +K F ++ Sbjct: 178 KQIKAVVKSESLPIVKSPCHVDGKTKRQYIKDLILELQKDNREIKSNLFGAIKRA 232 >gi|312126480|ref|YP_003991354.1| PP-loop domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776499|gb|ADQ05985.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 235 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K AI++D Sbjct: 5 FSKVRKAVEDF-EMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITIDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D+RS + + +P + + R R++ FV+ + K F ++ + Sbjct: 174 EHDLRSAAKRLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230 >gi|157736789|ref|YP_001489472.1| hypothetical protein Abu_0536 [Arcobacter butzleri RM4018] gi|315635969|ref|ZP_07891230.1| PP-loop family protein [Arcobacter butzleri JV22] gi|157698643|gb|ABV66803.1| conserved hypothetical protein [Arcobacter butzleri RM4018] gi|315479753|gb|EFU70425.1| PP-loop family protein [Arcobacter butzleri JV22] Length = 261 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 17/189 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV SGG DS+ L+ +L+ + + +F A++V + + E V ++S+ C Sbjct: 25 GDKVLVGFSGGKDSLTLIHSLNRLKKVVPY-NFEFKAVTVTYGMGEQ----VEFLSNHCK 79 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H +++ + + + + R + A + H DD Sbjct: 80 EHGIEHEIINTEIFELAGEKIRKNSSFCSFFSRMRRGYLYSTALEQGYNKVALGHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + M + L + RP + CR +R+F I D Sbjct: 140 MESFFMNFFYNGTMR-----TMPPIYKAENGLEVIRPLIFCRERQLRAFANTNEIRVIGD 194 Query: 192 PSNTDDRFE 200 + RF+ Sbjct: 195 EACPGLRFD 203 >gi|312136135|ref|YP_004003473.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776186|gb|ADQ05673.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL] Length = 235 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 18/219 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--SDVC 77 I V VS G DS+ +L L + K AI+VD + + ++ + C Sbjct: 22 DKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMGF-----EGMDFLPIKEFC 75 Query: 78 SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + +V + + + + R +++ AK++ + H DD Sbjct: 76 DKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDV 135 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ +G T L + + RP + + D+RS + + + Sbjct: 136 VETFFLSLF----YEGRIYCFSPKTYLDRTQVTVIRPMIYVKEHDLRSAAKKLELPVITN 191 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P + + R +++ FV+ + K F ++ + Sbjct: 192 PCPANGKTNRQKMKEFVKSLKQFHPATKDLVFNAIKRNI 230 >gi|167770401|ref|ZP_02442454.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM 17241] gi|167667408|gb|EDS11538.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM 17241] Length = 236 Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats. Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 20/217 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY--VSDVC 77 + V VSGG DS+ LL L V R F I F+ AI++D + E Y ++ +C Sbjct: 24 VAVGVSGGKDSVALLAGLAGV---RRFIGISFTLKAITLD---NQFGGIETDYGPIAALC 77 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RL + + + + + ++ + R L+ + AKT I H ++D Sbjct: 78 ERLGVEYILKRTDIGRIIFDERNESNPCSLCARMRRGLLHDTAKTNGCNKIALGHHYNDA 137 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET M +G T L +L + RP + +IR+ + + + + Sbjct: 138 VETFLMNLF----NEGRIGCFSPVTYLSRKDLTMVRPLVFATEREIRNAVNRAGLPVVKS 193 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 D ER + F+ D++ + + + F +R Sbjct: 194 ACPVDGCTERQWTKEFLYDMEKNHPGITKRIFGAMRR 230 >gi|237802640|ref|YP_002887834.1| hypothetical protein JALI_2111 [Chlamydia trachomatis B/Jali20/OT] gi|231273874|emb|CAX10665.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT] Length = 254 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 6/182 (3%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S + + L I VA+SGG DS+ LL+ L ++ S R F ++ AI + Sbjct: 19 SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A Y+S +C ++++ + + + R L+ + AK + AT + Sbjct: 78 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ++T M + + G+ + D + + + I RP + + IR F ++ Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAME 192 Query: 184 RN 185 Sbjct: 193 SG 194 >gi|329577262|gb|EGG58726.1| tRNA(Ile)-lysidine synthetase domain protein [Enterococcus faecalis TX1467] Length = 353 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 25/206 (12%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + A ++MTAH DDQ ET+ M+ R +G+ + + + RP L Sbjct: 1 MEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYP 57 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 +E++ F ++ + ED +N + + R R+R V L L + +F D +N Sbjct: 58 KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNE 113 Query: 234 ---VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA-------ICGGQISLP- 282 I + + + + ++ I L LL+ + A + +P Sbjct: 114 QRFAQEFIQEQIEPQLSEAVEPTKQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPL 170 Query: 283 ----GYRSMERVMLFLKSGKRGCVSI 304 R M +++ L ++ S+ Sbjct: 171 GVSLNQRQMTQILKVLNDERQPQGSV 196 >gi|170754445|ref|YP_001782920.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] gi|169119657|gb|ACA43493.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] Length = 249 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -NMDLEPLKIFCKKNSIDLVIEKNNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD +ET++M + G S D + I RP + R + I+ Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + D + R ++ + ++ Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|15679197|ref|NP_276314.1| hypothetical protein MTH1186 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622294|gb|AAB85675.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 278 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 14/225 (6%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L+ P HI VA+SGG DS+ L AL + SD F + +AI+VD + + V Sbjct: 21 HELIKPGEHIAVALSGGKDSVLTLHALSDLRSDLDF---ELTAITVDEGIGGYRSEGVMV 77 Query: 73 VSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIM 123 + L + S+++ + R +++ A+ I A+ I Sbjct: 78 ARENAELLGVELIERSFRDEFNFELDSVTDRFSSPCIPCGVFRRWILNRTAREIGASKIA 137 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD++++ M R K I + I +P ++R + + Sbjct: 138 TGHNMDDEIQSFIMSLARGDVRKFSKFGPELQRIHPAMVPRI-KPLWSTPESEVRLWAVL 196 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 ++ D D R R+R F+ ++ +K++ + L Sbjct: 197 NDVKVHLDSCPYSDLSMRSRIRDFLNHLESEKQGVKLRVMESLSR 241 >gi|255657558|ref|ZP_05402967.1| putative ATPase [Clostridium difficile QCD-23m63] gi|296452767|ref|ZP_06894456.1| ExsB family protein [Clostridium difficile NAP08] gi|296879981|ref|ZP_06903951.1| ExsB family protein [Clostridium difficile NAP07] gi|296258386|gb|EFH05292.1| ExsB family protein [Clostridium difficile NAP08] gi|296428958|gb|EFH14835.1| ExsB family protein [Clostridium difficile NAP07] Length = 244 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + ++++ F + I V +SGG DS+ LL L S S + AI+++ Sbjct: 6 LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + +C + + + + + A R ++++A Sbjct: 64 GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRKEKNPCALCANLRRGALNDNA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET M +G T L +L + RP + Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMIYIEE 174 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N +P + R ++ + +++ K F +NN+ Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230 Query: 235 AMLIPKYLTV 244 + I + Sbjct: 231 KLFIWDKEKI 240 >gi|118474467|ref|YP_892648.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40] gi|261886379|ref|ZP_06010418.1| PP-loop family protein [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413693|gb|ABK82113.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40] Length = 250 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + IL+ +SGG DS+ L L + + K +F A++ L ++ Y+ Sbjct: 20 KMFEKNDKILLGLSGGKDSLALAHILKHFQ-NVTPDKFEFEAVT----LSYGMGEDYAYL 74 Query: 74 SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C + I HSV+ S + + + R + +A + AH Sbjct: 75 TAHCEKHGIKHSVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E+ +M + A L + L + RP + R +R + N+ Sbjct: 135 HLDDAAESFFMNFTYNGA-----LRTLAPKYRAKNGLVLIRPLINVRERQLRDNATKNNL 189 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 D + RF+ +KM + ++ + PK T Sbjct: 190 FVIGDEACPAMRFD-----------------VKMPHARHETKQLLAGLEKENPKLFTSLQ 232 Query: 247 RSIIAISQDIL 257 + I +D Sbjct: 233 AAFENIHRDTF 243 >gi|45656041|ref|YP_000127.1| cell cycle protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|61216563|sp|Q72W10|TILS_LEPIC RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|45599274|gb|AAS68764.1| cell cycle protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 433 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 27/224 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + E + F ++ +++ SGG DS LL + ++ +DH Sbjct: 13 FHAVWERIAPF-HEMIQSRPAVLSYSGGKDSSILLHFYFWLWIEKKIPAPCIY--HLDHS 69 Query: 62 LR----------ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 +R E A + S + + I L R RY + Sbjct: 70 IRFNLEQEKKIFEYADSTFPF-SKIFKKKNIPALSRRL-----GKTLEETGRAFRYKDLK 123 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + + I+T H D LET+ + R + G + + RP Sbjct: 124 KISDQYEG-YIVTGHHSSDYLETILLNLIRGGGWNSLRTLGWYEKNRF-------RPLFA 175 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 +E+I + L ED SN D + R R+R ++ + L Sbjct: 176 FSQEEIETILQSEFWKIFEDESNNSDEYLRNRIRSYIIPLLLRE 219 >gi|239916682|ref|YP_002956240.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] gi|281414860|ref|ZP_06246602.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] gi|239837889|gb|ACS29686.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665] Length = 394 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 8/194 (4%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSRLR 81 LVA+SGG+DS+ L +A ++ R ++ A VDH L+ + + V L Sbjct: 69 LVALSGGADSLALALACAVLVGTREGRRLNPIGAAVVDHGLQSGSDAVAAAAAGVARILG 128 Query: 82 I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI----NATLIMTAHTFDDQLETVY 136 + +V + ++ G A AR AR ++ A+ A +++TAHT DDQ E V Sbjct: 129 LTPVTVTRVEVARTGDGPEANARRARREALAAAARDAVPGAGAAVVLTAHTADDQAEQVL 188 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R + L+G+ + RP L R D + ++W EDP N D Sbjct: 189 LGLARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLTRADTETICRWAGLTWFEDPHNRD 246 Query: 197 DRFERVRVRRFVRD 210 R RVR V Sbjct: 247 PALLRSRVRTRVLP 260 >gi|15612173|ref|NP_223825.1| hypothetical protein jhp1108 [Helicobacter pylori J99] gi|4155705|gb|AAD06688.1| putative [Helicobacter pylori J99] Length = 253 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F K F A++V + L E ++++SD+C Sbjct: 26 GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80 Query: 79 RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H ++ + + + ++ + R + A + AH DD Sbjct: 81 EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALGEGYNKVAIAHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + + L M + L + RP ++ R F+ +NI D Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIRVAPD 195 Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235 P++ R+ + F++++ +LH + F L NN A Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242 >gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rhodococcus equi 103S] gi|311887387|emb|CBH46699.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus equi 103S] Length = 329 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 17/215 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +VR ++ ++VA+SGG+DS+ L +A + A+ VDH L Sbjct: 17 LEVRHAVRAWLARHHPAGGVVVALSGGADSLALTVAAVAEAP-------SVRAVVVDHRL 69 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 ++ + + + A + V + GL AAAR A + + Sbjct: 70 QDGSAEVAAVAAARALEFGCAGADVVPVDVTGPGGLEAAARAA---RYAALDAARAGRPV 126 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV + R G + GM + RP L RR+ R Sbjct: 127 LLGHTLDDQAETVLLGLARGSG--GRSIRGMAGY-----DAPWGRPLLGVRRDVTRRACA 179 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 + + EDP N D F RVR+R V + AL Sbjct: 180 ELGLVAHEDPHNADPAFTRVRLRTEVLPLLEDALG 214 >gi|24212845|ref|NP_710326.1| cell cycle protein [Leptospira interrogans serovar Lai str. 56601] gi|61216655|sp|Q8F9P6|TILS_LEPIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|24193502|gb|AAN47344.1| cell cycle protein [Leptospira interrogans serovar Lai str. 56601] Length = 433 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 27/224 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + E + F ++ +++ SGG DS LL + ++ +DH Sbjct: 13 FHAVWERIAPF-HEMIQSRPAVLSYSGGKDSSILLHFYFWLWIEKKIPAPCIY--HLDHS 69 Query: 62 LR----------ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 +R E A + S + + I L R RY + Sbjct: 70 IRFNLEQEKKIFEYADSTFPF-SKIFKKKNIPALSRRL-----GKTLEETGRAFRYKDLK 123 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + + I+T H D LET+ + R + G + + RP Sbjct: 124 KISDQYEG-YIVTGHHSSDYLETILLNLIRGGGWNSLRTLGWYEKNRF-------RPLFA 175 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 +++I + L ED SN D + R R+R ++ + L Sbjct: 176 FSQDEIETILQSEFWKIFEDESNNSDEYLRNRIRSYIIPLLLRE 219 >gi|319956547|ref|YP_004167810.1| pp-loop domain protein [Nitratifractor salsuginis DSM 16511] gi|319418951|gb|ADV46061.1| PP-loop domain protein [Nitratifractor salsuginis DSM 16511] Length = 272 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 22/215 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + +LV +SGG DS+ L+ L ++ F +F A +V + + + Sbjct: 27 RLIGAGDRVLVGLSGGKDSLSLVHLLKNMQMHAPF-DFEFHACTVSYGM-PGEDYSALH- 83 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C I H+V +S + + + + R + A+ I H Sbjct: 84 -EHCEAYGIPHTVYETDIYAISQETIREGSSFCSYFSRMRRGALYSFAEKGGYDKIALGH 142 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 FDD +E+ +M + + M D + RP + R +R+F + Sbjct: 143 HFDDAVESFFMNMFYNGVMRS-----MAPIYKADRGFHVVRPLIEAREAQLRAFAEENGF 197 Query: 187 SWCEDPSNTDDR------FERVRVRRFVRDIDLHA 215 + D + R + R + ++R ++ Sbjct: 198 ATIGDEACPAMRIATKAPYARAATKEWLRQMEGEH 232 >gi|254977231|ref|ZP_05273703.1| putative ATPase [Clostridium difficile QCD-66c26] gi|255094560|ref|ZP_05324038.1| putative ATPase [Clostridium difficile CIP 107932] gi|255316315|ref|ZP_05357898.1| putative ATPase [Clostridium difficile QCD-76w55] gi|255518975|ref|ZP_05386651.1| putative ATPase [Clostridium difficile QCD-97b34] gi|255652155|ref|ZP_05399057.1| putative ATPase [Clostridium difficile QCD-37x79] gi|260685123|ref|YP_003216408.1| putative ATPase [Clostridium difficile CD196] gi|260688781|ref|YP_003219915.1| putative ATPase [Clostridium difficile R20291] gi|260211286|emb|CBA66853.1| putative ATPase [Clostridium difficile CD196] gi|260214798|emb|CBE07529.1| putative ATPase [Clostridium difficile R20291] Length = 244 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + ++++ F + I V +SGG DS+ LL L S S + AI+++ Sbjct: 6 LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + +C + + + + + A R ++++A Sbjct: 64 GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET M +G T L +L + RP + Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMIYIEE 174 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N +P + R ++ + +++ K F +NN+ Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230 Query: 235 AMLIPKYLTV 244 + I + Sbjct: 231 KLFIWDKEKI 240 >gi|148381240|ref|YP_001255781.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502] gi|153931301|ref|YP_001385615.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|153937030|ref|YP_001389021.1| PP-loop family protein [Clostridium botulinum A str. Hall] gi|148290724|emb|CAL84855.1| putative ATP-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927345|gb|ABS32845.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|152932944|gb|ABS38443.1| PP-loop family protein [Clostridium botulinum A str. Hall] Length = 249 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%) Query: 9 VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD L Sbjct: 16 VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++ + C + I + N + + + + R + +K+I A Sbjct: 72 -NMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD +ET++M + G S D + I RP + R + I++ Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKN 186 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + N+ + D + R ++ + ++ Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|148726265|emb|CAL07962.2| hypothetical protein [Ruminococcus flavefaciens] Length = 248 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 26/223 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETAKDEVRY 72 ILV VSGG DS+ LL L + K A+++D Sbjct: 22 DRILVGVSGGKDSLVLLDGLVMLQRFIGI-DYKVIAVTLDMGFTNGTMDFSP-------- 72 Query: 73 VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +++ C+ L + + ++ + + + + + R + + A + + H Sbjct: 73 ITEHCNALGVEYHIIPTQIAEIVFDVRNEPSPCSLCARMRRGALHDAANDLGCNKVALGH 132 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +DD +ET M +G T L + + RP + +++R + + Sbjct: 133 NYDDTVETFIMNLF----TEGRIGCYSPSTYLTHKKVTVIRPLVLAPEKEVRRAARRNAL 188 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 D R + + F+ D++ K + F ++ Sbjct: 189 PVVTSVCPADGHTNRQKTKEFIADMERKEHGFKDRIFGAMKRA 231 >gi|227505939|ref|ZP_03935988.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium striatum ATCC 6940] gi|227197461|gb|EEI77509.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium striatum ATCC 6940] Length = 321 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 19/203 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R V I V +SGG+DS+ L AL + A+ +DH L++ + Sbjct: 20 ACRRAVADFAACREIAVGLSGGADSLALTAALVA-------EGFDVEALCIDHGLQDGSA 72 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ + L V+ +K Q + AAAR A + AHT Sbjct: 73 EQAAKAAAQAETLGARARVLKVDVAK-QGSMEAAARVA----RYRAFAAATDAPVAVAHT 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R ++GM T + + + RP L RR + + Sbjct: 128 ADDQAETLLLGALRGK------VAGMLPTAEIE-GVQVVRPLLTVRRAQTLGACEELGLE 180 Query: 188 WCEDPSNTDDRFERVRVRRFVRD 210 DP N+D F RV +R + Sbjct: 181 PWYDPQNSDTNFRRVALRHDIIP 203 >gi|188589311|ref|YP_001921417.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499592|gb|ACD52728.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43] Length = 239 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 82/211 (38%), Gaps = 16/211 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS+ LL L++ S K + AI+++ + + + +C Sbjct: 21 GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQKFELIAITLNPGGVDNSP-----LYTLCE 74 Query: 79 RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + K + + R + A+ + + H DD L Sbjct: 75 NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHSAENLGCNKVALGHHKDDAL 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + +G T+++ + + RP + +IRS + + N+ ++P Sbjct: 135 ETLMLSM----SYEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIRSVVKKYNLPVIKNP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 D + +R ++ + +++ K F Sbjct: 191 CPADGKTKRQDIKELIDELNNKIPGFKKNLF 221 >gi|320100819|ref|YP_004176411.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753171|gb|ADV64929.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162] Length = 339 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 111/300 (37%), Gaps = 41/300 (13%) Query: 2 FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ E V+ +R L HI+VAVSGG DSM LL L + R + +A+ Sbjct: 27 FIEYFEKKVKKTIRKYEMLGEREHIIVAVSGGKDSMALLHFLRKL--SRKIPGWRITAVL 84 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREA---------- 105 VD + + +R ++ + + V S+K T R Sbjct: 85 VDEGISGYREKTIRNLAKYAEENGVEYRVASFKEYIGATLDEIVEKGRSRGLPYLPCSYC 144 Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R ++++ A+ + T+I TAH DD ++T M + +K + + Sbjct: 145 GVFRRYVLNKAARELGGTVIATAHNMDDVVQTFIMNLASNSVDK---IYRLTPVTGNGEG 201 Query: 163 LWISR--PFLRCRREDIRSFLLQRNI---SWCEDP-SNTDDRFERVRVRRFVRDIDLHAL 216 +I R PF ++ + L N+ + + P ++ + RF +RR + +++ Sbjct: 202 GFIRRVKPFYMVLEKESALYALLNNLVEPEYVQCPYAHYNIRFT---IRRMINELE---- 254 Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276 K+ ++ + N++ L R I + L R + Sbjct: 255 ----DKYPGVKYGLVNSLLSLTRDRQPSSTRGYICEICGEPSSHRVCRACLYRFETGLMS 310 >gi|210624190|ref|ZP_03294245.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275] gi|210153177|gb|EEA84183.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275] Length = 250 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 18/212 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77 I + +SGG DSM LL L + S K + AI CL+ A + + ++C Sbjct: 26 GDKIAIGLSGGKDSMALLHVLSTYRR-FSPEKFELMAI----CLQMGGADNSSLH--ELC 78 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + + + + + + R ++++A + H DD Sbjct: 79 KELDVEFHEIPTDIKEVVFDVRQEKNPCSLCAKMRRGALNDYAVKFGCNKVALGHHKDDA 138 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET M +G + + L L + RP + I+ + + ++ Sbjct: 139 LETFLMSMF----YEGRVSTFSPKSYLDRTGLTVIRPMVYVEEYLIKKTAEEMDFKIVKN 194 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 P D +R ++ + + K F Sbjct: 195 PCPADGNTKRQYIKELIARLQDEMPDFKKNMF 226 >gi|255308638|ref|ZP_05352809.1| putative ATPase [Clostridium difficile ATCC 43255] Length = 244 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + ++++ F + I V +SGG DS+ LL L S S + AI+++ Sbjct: 6 LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + +C + + + + + A R ++++A Sbjct: 64 GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET M +G T L +L + RP + Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMVYIEE 174 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N +P + R ++ + +++ K F +NN+ Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230 Query: 235 AMLIPKYLTV 244 + I + Sbjct: 231 KLFIWDKEKI 240 >gi|126701229|ref|YP_001090126.1| putative ATPase [Clostridium difficile 630] gi|255102819|ref|ZP_05331796.1| putative ATPase [Clostridium difficile QCD-63q42] gi|115252666|emb|CAJ70509.1| putative ATPase [Clostridium difficile] Length = 244 Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + ++++ F + I V +SGG DS+ LL L S S + AI+++ Sbjct: 6 LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 + + + +C + + + + + A R ++++A Sbjct: 64 GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET M +G T L +L + RP + Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMVYIEE 174 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + N +P + R ++ + +++ K F +NN+ Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230 Query: 235 AMLIPKYLTV 244 + I + Sbjct: 231 KLFIWDKEKI 240 >gi|220932926|ref|YP_002509834.1| PP-loop domain protein [Halothermothrix orenii H 168] gi|219994236|gb|ACL70839.1| PP-loop domain protein [Halothermothrix orenii H 168] Length = 260 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 13/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +ILV +SGG DS LL L +++ + + +A++VD + K+ Y+ + C Sbjct: 26 GDNILVGLSGGKDSSFLLYVLA-LINRYASLDFRLAALTVDLGF-DGGKNYFDYLKNYCD 83 Query: 79 RLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 RL + + V+ S+ S+ A R I + K I H +DD +E Sbjct: 84 RLGVKYYVLETEIASYILSEKTEKPCARCAHFRKGAIVDFMKENGFNKIAYGHHYDDAVE 143 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M G + + T L +++ RP + R +I + + E P Sbjct: 144 TFLMSIL----YAGQVKTFLPKTYLSRNEVYVIRPLVYLRESEIIRARKYMDYNPPESPC 199 Query: 194 NTDDRFERVRVRRFVRDI--DLHALYLKMKKFQD 225 D + R +V++ +R++ D Y ++ Sbjct: 200 PYDGQTTRDKVKKLLRELASDKQIFYNIAAAMRE 233 >gi|237736917|ref|ZP_04567398.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Fusobacterium mortiferum ATCC 9817] gi|229420779|gb|EEO35826.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Fusobacterium mortiferum ATCC 9817] Length = 251 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 18/237 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SPI + I V VSGG DSM L AL V + I + Sbjct: 24 SPIGRAMHKYNMVEAGDRIAVGVSGGKDSMTTLNALVRVKKIAQI-DFEIIPIHIH---- 78 Query: 64 ETAKDEV-RYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116 + C L + V S K R ++ K Sbjct: 79 PNTDKASYEKIEKYCEELDLKLQVESTNLSDMLFGEKEVKNPCFLCGRIRRGILYRMMKE 138 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 N + H DD +ET M +G + + + + RP D Sbjct: 139 QNINKLALGHHKDDIIETFLMNVF----YQGNMKMMKPSYVSEEYGVRVIRPLAYVEEAD 194 Query: 177 IRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 I ++ ++ + + P T + +R+RV+ ++++ ++ F ++ ++ Sbjct: 195 IIRYVKKQELPVVASDCPYETSENSKRLRVKNLIKELAQENKDVRSVVFNSIKEMLD 251 >gi|51245182|ref|YP_065066.1| hypothetical protein DP1330 [Desulfotalea psychrophila LSv54] gi|50876219|emb|CAG36059.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 244 Score = 114 bits (286), Expect = 3e-23, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 10/215 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRY 72 L +LV +SGG DSM L LH ++ + I+VD+ + A D Sbjct: 27 LEDGDRVLVGLSGGVDSMVLAWILH-FWQKKAPISYQIETITVDNGYWRSSKGATDPQLS 85 Query: 73 VSDVCSRLRIAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + I H VV W ++ + AR R L A+ I H DD Sbjct: 86 IGPQMEKFGITHRVVDAWALAREEMTCYLCARNRRNQLFD-IARAEGFNKIALGHHKDDL 144 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET + G + + L+ L I RP +E ++ + ++ Sbjct: 145 LETFMLNCL----YSGNISTMVPHQKLFAGRLGIIRPMAYLEKEHVQELAGLAGLLPVKN 200 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D R +VR+ + I K F L Sbjct: 201 YCPLSDHTRREKVRKILAHIYEIEPDAKKSMFAAL 235 >gi|291001787|ref|XP_002683460.1| predicted protein [Naegleria gruberi] gi|284097089|gb|EFC50716.1| predicted protein [Naegleria gruberi] Length = 886 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 14/218 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++P++ + +L+ +SGG DS+ LL LH++ +F A +VD Sbjct: 595 MAPVKKAIREFDMIKEGDRLLLGLSGGKDSLTLLHVLHALQYSNLGINFEFGACTVD--- 651 Query: 63 RETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +TA + + + C +L + + V+ + + A + ++ A+ Sbjct: 652 PQTASYDPSPLINYCKQLGVPYFYESQSVIEGAKECDASSICAWCARMKRGILYNTARRE 711 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +++ DD E+ M + + M D +L + RP + R + Sbjct: 712 GYNVLVLGQHLDDLAESFIMSIFHNGFMRTMKAHYTIDV----GDLRVIRPLIYVRETET 767 Query: 178 RSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213 + F + + P+ + ER RV+ + + +L Sbjct: 768 KKFAWESGLPVINENCPACFEIPKERARVKTLLANQEL 805 >gi|116199727|ref|XP_001225675.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51] gi|88179298|gb|EAQ86766.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51] Length = 312 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 18/168 (10%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52 FL + + RF I +A+SGG DSM L + + K+ Sbjct: 20 FLDALAATCVPRFPQARSRAQRPIALAISGGVDSMALAYLCSKIRQTDQWFKVVDHSISS 79 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQT-------GLMAAAR 103 + V+H LRE + E V+ +L + VV W P+ + AR Sbjct: 80 PCGVIVNHDLREGSAIEADNVAVATRKLGVKSHVVRIRWDEVLPEGTKPNDVPNIETLAR 139 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 RY + K + TAH DDQ ETV MR + +G+ Sbjct: 140 YLRYRRLGTFCKVGQMATLFTAHHEDDQYETVMMRLLSGHGYRGLQGM 187 >gi|302900689|ref|XP_003048310.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI 77-13-4] gi|256729243|gb|EEU42597.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI 77-13-4] Length = 677 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 23/195 (11%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------ 52 F +++V RF P + + GG DSM L +L KI Sbjct: 20 FRDAVDAVCRPRFPAARSARPQRVGI---GGVDSMALAYLTSRMLQTFRRAKIADNPAHG 76 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103 A+ +DH LR+ + +E V+ +L + +V ++WK K L AR Sbjct: 77 ALAVVIDHRLRDESTEEAMQVAKELRKLDLKTTVTALAWKEEKRNGLDPRKLPNLEGLAR 136 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161 RY + H AT + AH DDQ ETV MR + +G+ ++I YD+ Sbjct: 137 TYRYRALGNHCNYQGATSLFFAHHRDDQYETVLMRLLGGHGYRGLQGIREANSIPECYDM 196 Query: 162 NLWISRPFLRCRRED 176 + + +R Sbjct: 197 HGVYKSGLIDDQRNQ 211 Score = 63.8 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVRVRRFVRDIDLHAL 216 + D + I RP L ++ + + NI W ED +N D R +R VR+ +L Sbjct: 275 IEDGGVTIYRPLLEFDKDRLIATCEANNIPWVEDRTNKDPTLTTRNAIRYLVRNHELPKA 334 Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251 K + + +II Sbjct: 335 LQKPAILALAERAKRRTKLEEAEAHRYLVREAIIK 369 >gi|307720710|ref|YP_003891850.1| PP-loop domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306978803|gb|ADN08838.1| PP-loop domain protein [Sulfurimonas autotrophica DSM 16294] Length = 249 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 17/197 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S + + + ILV +SGG DS+ ++ A+ R+ +F A++V + + Sbjct: 10 MSKLGKTNAEFKLIEEGDKILVGLSGGKDSLTMIHAMKE-QQRRAPFAFEFIAVTVSYGM 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115 E +S C I H + + + + + R + AK Sbjct: 69 GENFDK----LSAHCREHGIQHVIKETQTYDLAKEKIRKNSSFCSFFSRMRRGYLYSVAK 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H DD E+ +M + + + L + RP ++ R Sbjct: 125 ELGCNKVALGHHMDDAAESFFMNFIYNGQMRSLAPKYTAQ-----NGLVVIRPLIQMRER 179 Query: 176 DIRSFLLQRNISWCEDP 192 +R+F+ I D Sbjct: 180 QLRAFVEDNGIEAIGDE 196 >gi|227547905|ref|ZP_03977954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium lipophiloflavum DSM 44291] gi|227080010|gb|EEI17973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium lipophiloflavum DSM 44291] Length = 300 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 116/317 (36%), Gaps = 31/317 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 + R +R+L PA ++ +SGG+DS ++++ + A+ VDH L+E + Sbjct: 14 ACRRSLRALHGPA--VIGLSGGADS-------LALVAAAAAEDKDVRAMIVDHQLQEGSD 64 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 R ++ + + SV++ A + + AHT Sbjct: 65 QVARCAAEQANAWGVKASVIAVNAGGDNLEAAAR------EARYAALLSFGVD-VWVAHT 117 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DDQ ET+ + + R GM G ++ I RPFL RR D R + ++ Sbjct: 118 ADDQAETLLLGALRGN-PSGMAARG-------GIDNRILRPFLGIRRADTRGACAELGVT 169 Query: 188 WCEDPSNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 EDP N D+ + RR + +D + ++ ++ T Sbjct: 170 PWEDPMNVDENYRRVAVRRRVIPQLDELIGGDCVPALAATAGRIAADRELIEELCDTSAT 229 Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306 + +++D + L + G ++ S+ER++ + + +G Sbjct: 230 SDCVELAKD----PAPLRRRRIVAWLHDSGVRVDGAQLCSIERLITDWHG--QAGIDVGG 283 Query: 307 VVIDRRANFLWITRAVR 323 RR + +R Sbjct: 284 CRRVRRVAGRLVLDELR 300 >gi|19173081|ref|NP_597632.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon cuniculi GB-M1] gi|19168748|emb|CAD26267.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon cuniculi GB-M1] Length = 317 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 17/221 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 I + VSGG DS L L +L+ + ++ +SVD + + V Sbjct: 45 FQKGDRIGIGVSGGKDSTVLAYVL-DLLNRKHGYGVELVLLSVDEGIVGYRDQSIESVCR 103 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 L I +VS+++ + R + + A+ + I T Sbjct: 104 NSKDLGIKLRIVSFEDVFGVTMDRVVQKIGRRSNCTYCGVFRRQALEKAAREMGVDAIAT 163 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL-----SGMCDTILYDLNLWISRPFLRCRREDIRS 179 H DD ETV + R + ++L +PF +++I Sbjct: 164 GHNADDMAETVLLNVLRGDISRLRRCTLAKTKEQKGGDGKAMSLSRLKPFKNIYQKEIVL 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 + R + + R +R ++ ++ + M Sbjct: 224 YAFHRKLEYFSTECTYSPGASRGDLRMLIKQLEKEDPGIIM 264 >gi|220930764|ref|YP_002507673.1| PP-loop domain protein [Clostridium cellulolyticum H10] gi|220001092|gb|ACL77693.1| PP-loop domain protein [Clostridium cellulolyticum H10] Length = 239 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 18/219 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I V VSGG DSM LL AL + + K + AIS+ + A + V + Sbjct: 24 GDRIAVGVSGGKDSMTLLTALRQLQNFYP-KKFELEAISLTMGI-GNAD----FTPVVEY 77 Query: 77 CSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C ++ + +++ + + + R + AKT+ + H DD Sbjct: 78 CKKIGVNYTIEETLIGKIIFEVRNEKNPCSMCANLRRGALHNKAKTLGCNKVALGHHRDD 137 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ + +G + T L +L++ RP + + I+S + ++ + Sbjct: 138 AVETLLL----STFYEGRIHTFSPVTYLDRKDLYLIRPLIYTEEKQIKSVVKSESLPIVK 193 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 P + D + +R ++ + D+ +K F ++ Sbjct: 194 SPCHVDGKTKRQFIKDLILDLQKDNREIKSNLFGAIKRA 232 >gi|187776786|ref|ZP_02993259.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC 15579] gi|187775445|gb|EDU39247.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC 15579] Length = 249 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 18/218 (8%) Query: 4 SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++ VR + +++ P I VAVSGG DS+ LL L ++ + I+ AI VD Sbjct: 11 KFLKYVRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDL 69 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114 L + + C + I + N + + + R + + Sbjct: 70 GL----DMGLEPLKIFCKKNGIDLIIEKTNIANVVFNERKDKNPCSLCSKLRKGCLVRVS 125 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K+I AT I H DD +ET++M + G S D + I RP + R Sbjct: 126 KSIGATKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLRE 181 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + I+ + + N+ + D + R ++ + ++ Sbjct: 182 DLIKDLVEKYNLPVIKSTCPEDKKTTREEMKNLMFKLE 219 >gi|32267111|ref|NP_861143.1| hypothetical protein HH1612 [Helicobacter hepaticus ATCC 51449] gi|32263164|gb|AAP78209.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 267 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ LL L S + + K F AI++D+ R E Y+ + C Sbjct: 40 GDKVLLGLSGGKDSI-LLATLLSYMQKHAPFKFDFKAITIDYG-RGG---EYEYIFEYCE 94 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + N + T + R + A + AH DD Sbjct: 95 KLGITYELYRTDIYKILEENKREGTIYCSFCSRMRRGALYSKALEGGFNKLALAHHLDDA 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 E+ +M + A + M T L + RP + R I F+ +I Sbjct: 155 AESFFMNLTYNGAMRS-----MPPTYRAQNGLEVIRPLIFVRERQIIDFIASNHI 204 >gi|327310455|ref|YP_004337352.1| PP-loop domain-containing protein [Thermoproteus uzoniensis 768-20] gi|326946934|gb|AEA12040.1| PP-loop domain protein [Thermoproteus uzoniensis 768-20] Length = 334 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 25/209 (11%) Query: 1 MFLSPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F S E V +R ++ P + VA+SGG DS+ LL L + + ++ A + Sbjct: 29 LFRSIEEKVWRTIRDERMIEPGDKVAVAISGGKDSLVLLDILGKLKARGRLKDVELEAFT 88 Query: 58 VDHCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------- 105 ++ + +V ++ R +A+SV ++K + L A R Sbjct: 89 INEG-HPYSCFYRMSRADFVKELAGRYGVAYSVFNFKEVFGYSALELAERLWKSGVDIHM 147 Query: 106 -------RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 R ++ K T I TAH DD+ +TV + ++ L D Sbjct: 148 CAVDGILRRKAMNLIGKRRGWTKIATAHNLDDEAQTVLLNVLMGNLKRFAWLD--LDDAE 205 Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187 + +P R E++ + I Sbjct: 206 EKDLVRRIKPLKYVREEEVAVYAHYHGIP 234 >gi|169831045|ref|YP_001717027.1| PP-loop domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637889|gb|ACA59395.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 307 Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 13/216 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL+ ++ R + + VSGG DS LL L L D S + + A+ +D Sbjct: 20 FLTRVKKAVGDYRMIEPGDRVAAGVSGGKDSTALLYILA-YLRDYSHLRFELEAVMLDLG 78 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKT 116 E + C RL + + + K + R ++++ A + Sbjct: 79 W-GEVDFEPH--REFCRRLGVPLHIHVRPVAGIIRDKEGMNPCKLCGKLRAGILNQAALS 135 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + A + H DD +ET + G + T L + L + RP + Sbjct: 136 LGANRVALGHHLDDVIETYLLNLI----FTGQMKTFRPSTYLTNTGLTLIRPLVYLPERV 191 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + E+P + R +R ++ V ++ Sbjct: 192 LSGLTAGKGFPVIENPCPYNGRTKRDEMKAVVTELA 227 >gi|146295593|ref|YP_001179364.1| PP-loop domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409169|gb|ABP66173.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 235 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 87/237 (36%), Gaps = 19/237 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++V F + I V VS G DS+ +L L + K AI+VD Sbjct: 5 FSKVRKAVEDF-EMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62 Query: 62 LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113 + + ++ + C ++ + +V + + + + R +++ Sbjct: 63 F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK++ + H DD +ET ++ +G T L + RP + + Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D+R+ + + + + + R R++ FV+ + K F ++ + Sbjct: 174 EHDLRAAARKLELPVITNLCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230 >gi|226287515|gb|EEH43028.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis Pb18] Length = 404 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 27/308 (8%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++L YP + + SGG DS L L ++ ++R + + +S+D ++ D + Sbjct: 45 KALFYPGERVAIGASGGKDSTVLASVLKTL-NERHNYGLHLTLLSIDEGIKGYRDDSLET 103 Query: 73 VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 V ++ + +V + G R + A + Sbjct: 104 VKRNAAQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + + R R ++D++ + V+ +A L+P Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKVRPSSILD-----IVRSGEDMARLVPPE 277 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 ++ + I S L D+ S CG Q P R + + L + Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGPPNGRELVDIEKDLSEDQ--T 329 Query: 302 VSIGRVVI 309 + + I Sbjct: 330 TATHEIQI 337 >gi|225678029|gb|EEH16313.1| VEG136 [Paracoccidioides brasiliensis Pb03] Length = 404 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 27/308 (8%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++L YP + + SGG DS L L ++ ++R + + +S+D ++ D + Sbjct: 45 KALFYPGERVAIGASGGKDSTVLASVLKTL-NERHNYGLHLTLLSIDEGIKGYRDDSLET 103 Query: 73 VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 V ++ + +V + G R + A + Sbjct: 104 VKRNAAQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + + R R ++D++ + V+ +A L+P Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKVRPSSILD-----IVRSGEDMARLVPPE 277 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 ++ + I S L D+ S CG Q P R + + L + Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGPPNGRELVDIEKDLSEDQ--T 329 Query: 302 VSIGRVVI 309 + + I Sbjct: 330 TATHEIQI 337 >gi|148690725|gb|EDL22672.1| ATP binding domain 3 [Mus musculus] Length = 430 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + V SGG DS L L + I ++VD + + V Sbjct: 58 LPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 114 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119 +R + ++V++++ + A AR R + E A+ + A Sbjct: 115 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 174 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I+T H DD ETV M R A + + G+ + L RP ++++ Sbjct: 175 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 233 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R++ + + R R ++ ++ Sbjct: 234 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 266 >gi|28210080|ref|NP_781024.1| PP family ATPase [Clostridium tetani E88] gi|28202516|gb|AAO34961.1| ATPase of the pp-loop superfamily [Clostridium tetani E88] Length = 236 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +I + +SGG DS+ LL L S + AI++D + + ++C Sbjct: 21 GDNIAIGLSGGKDSLALLYLLSKYRV-FSPERFNIIAITID----PGTNMDFSPLKNLCQ 75 Query: 79 RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + ++ + + + + R +++++AK + + H +D + Sbjct: 76 ELDVPLHIIDSNIKEIVFDIRKEKNPCSLCANLRRGILNDNAKKLGCNKVALGHHKNDAI 135 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G + T L ++ + RP + I+ ++ N ++ Sbjct: 136 ETLLLSMF----YEGRISCFLPKTYLDRKDITVIRPMVYIEEAAIKRTSVKYNFPIIQNS 191 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + +R ++ + + L+ + L Sbjct: 192 CPANGFTKRESIKNLIESLKKDFPDLENRLLGAL 225 >gi|300707175|ref|XP_002995807.1| hypothetical protein NCER_101213 [Nosema ceranae BRL01] gi|239605025|gb|EEQ82136.1| hypothetical protein NCER_101213 [Nosema ceranae BRL01] Length = 311 Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + + +SGG DS L L + ++ ++K + +D ++ + V + Sbjct: 45 FAKGSTVGIGISGGKDSTVLAYVLDKLNKKYNY-ELKLVLLCIDEGIKGYRDYSIDTVHE 103 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 L + V+S+ + + R + E A+ + I+T Sbjct: 104 NSKDLNLKLQVLSFDDLFGVNMDSVVQKVGKRNNCTYCGVFRRQALEEAARKCSVDYIVT 163 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRS 179 H DD ETV + R + G + + ++ +PF +++I Sbjct: 164 GHNADDMAETVLLNLIRGDINRLYGCTNPVTNKHITDDGFVISLPRTKPFKNTYQKEIVL 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R VR F+++++ Sbjct: 224 YAFHKKLKYFSTECTYAPEASRGYVRNFIKELE 256 >gi|251781032|ref|ZP_04823952.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085347|gb|EES51237.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 239 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS+ LL L++ S K + AI+++ + + + +C Sbjct: 21 GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQKFELIAITLNPGGVDNSP-----LYTLCE 74 Query: 79 RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + K + + R + A+ + + H DD L Sbjct: 75 NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHSAENLGCNKVALGHHKDDAL 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + + +G T+++ + + RP + +IRS + + N ++P Sbjct: 135 ETLMLSM----SYEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIRSVVKKYNFPVIKNP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 D + +R ++ + +++ K F Sbjct: 191 CPADGKTKRQDIKELIDELNNKIPGFKKNLF 221 >gi|57237125|ref|YP_178137.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|86153858|ref|ZP_01072061.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|57165929|gb|AAW34708.1| PP-loop family protein [Campylobacter jejuni RM1221] gi|85842819|gb|EAQ60031.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|284925411|gb|ADC27763.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315057558|gb|ADT71887.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 251 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192 >gi|227876236|ref|ZP_03994352.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243] gi|227843197|gb|EEJ53390.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243] Length = 400 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 107/297 (36%), Gaps = 42/297 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L A + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134 A V+ + + G +ARE R+ L++ A + + + T HT DDQ ET Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166 Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILYDLN---------LWISRPFLRCRRE 175 V +R R + + G+ N +WISRP L RRE Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRRE 226 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226 Q + DP+N + RV +R+ V AL QD Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 + + + + + + + ++ + + LR+ + G +P Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337 >gi|298674631|ref|YP_003726381.1| PP-loop domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287619|gb|ADI73585.1| PP-loop domain protein [Methanohalobium evestigatum Z-7303] Length = 314 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 28/227 (12%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E ++ +R ++ I +A+SGG DS LL L+ + DR I AI+ Sbjct: 38 FVEDVERKIKLTIRKHYNINRNETIAIALSGGKDSTVLLYILNKIFGDR--PDINLVAIT 95 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREAR 106 +D + D ++ ++ L I H + S+ + + G + R Sbjct: 96 IDEGISGYRLDTIQKSKELTDNLGIKHVIRSFADEYGMTLDELTQKQRSYGACSYCGVFR 155 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 L+++ AK AT + H DD+ +T+ + + + L + + Sbjct: 156 KKLLNKTAKEEGATRLAIGHNLDDEAQTILLNHLKGDISR---LVRLDPPKKIEGLTLRI 212 Query: 167 RPFLRCRREDIRSFLLQRNIS--WCEDPSNTDDRFERVRVRRFVRDI 211 +P +++ + + + + E P + +R VRD+ Sbjct: 213 KPLRSIPEKEVALYAIVNELPMDFSECP------YAHEAIRGEVRDM 253 >gi|281418862|ref|ZP_06249881.1| PP-loop domain protein [Clostridium thermocellum JW20] gi|281407946|gb|EFB38205.1| PP-loop domain protein [Clostridium thermocellum JW20] Length = 237 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + +R ++ + I V VSGG DS+ LL+AL + + K + AI++ Sbjct: 6 RLLGQIRRAIQDYNMIQDGDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTM 64 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114 + E ++ V ++C R+ ++++V + + + R + A Sbjct: 65 GIGE---VDLSPVRELCERIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTA 121 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + AH D +ET + +G + T L L++ RP + Sbjct: 122 KRLGCNKVALAHHMHDVIETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEE 177 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 + ++ F+ NI +P + +R ++ + ++ +K F ++ Sbjct: 178 KLVKQFVKANNIITVANPCPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 231 >gi|86151330|ref|ZP_01069545.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123720|ref|YP_004065724.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841677|gb|EAQ58924.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017442|gb|ADT65535.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 253 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192 >gi|148926916|ref|ZP_01810594.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp. jejuni CG8486] gi|145844493|gb|EDK21601.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp. jejuni CG8486] Length = 255 Score = 112 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 29 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 83 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 84 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 143 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 144 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 196 >gi|269976858|ref|ZP_06183832.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1] gi|269934689|gb|EEZ91249.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1] Length = 400 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 107/297 (36%), Gaps = 42/297 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L A + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134 A V+ + + G +ARE R+ L++ A + + + T HT DDQ ET Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166 Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILYDLN---------LWISRPFLRCRRE 175 V +R R + + G+ N +WISRP L RRE Sbjct: 167 VLLRLGRGASLLALSAMRPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRRE 226 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226 Q + DP+N + RV +R+ V AL QD Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 + + + + + + + ++ + + LR+ + G +P Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337 >gi|121612303|ref|YP_999842.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004813|ref|ZP_02270571.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87250191|gb|EAQ73149.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176] Length = 251 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRDNATQNELSVI 192 >gi|320529269|ref|ZP_08030359.1| PP-loop family protein [Selenomonas artemidis F0399] gi|320138443|gb|EFW30335.1| PP-loop family protein [Selenomonas artemidis F0399] Length = 260 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + IL+ VSGG DS+ L AL +L +R +A +V+ Sbjct: 10 FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFSIAAFTVN-- 65 Query: 62 LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 + + ++ C L +++ VV ++ R ++ +A Sbjct: 66 --PQFDEPFDTDAIAAFCKSLDVSYEVVDVDIAGTIAAQDDKSPCFTCAFFRRGAVNRYA 123 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 N + AH DD +ET M G + T L NL + RP + R Sbjct: 124 AEHNMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLERTNLTVIRPLVYFRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +++ + + P + R V+ + + + L +R Sbjct: 180 QELIDAIRYHGFTPLPSPCPHNGNTTRQTVKELIARLGVENPLLYDHLSAGMR 232 >gi|119872527|ref|YP_930534.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673935|gb|ABL88191.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184] Length = 330 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 28/206 (13%) Query: 4 SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++++R + L+ P + VA+SGG DS+ LL L L +K A +++ Sbjct: 35 KVLKTIRRY--RLIKPGDYVAVAISGGKDSLVLLYILGKFLQRNLLKDVKIEAFTINEG- 91 Query: 63 RET------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------- 103 +K E YV ++ S+ I ++V +K+ T + A Sbjct: 92 HPYSCFYRMSKRE--YVKELASKFGIEYNVYHFKDIFGVTAIELAESLSKRGHEVHMCTI 149 Query: 104 --EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 R ++ + T I TAH DD+ +TV M + + G+ + Sbjct: 150 DGVLRRRAMNIIGRRRGWTKIATAHNLDDEAQTVLMNVLMGNLSR-LSWYGLYEDAEEKD 208 Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187 + +P R E+I + I Sbjct: 209 LIPRIKPLKYIREEEIAIYAYYHGIP 234 >gi|225016794|ref|ZP_03705986.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum DSM 5476] gi|224950462|gb|EEG31671.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum DSM 5476] Length = 273 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 20/221 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRY--VS 74 I V VSGG DS+ LL L + + AI++D E+ Y + Sbjct: 53 GDRIAVGVSGGKDSVVLLAGLAQMRRFIGI-DYELVAITLDPRFG-----GVEMDYSPIE 106 Query: 75 DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +C L I + V + + + + R + + AK I H + Sbjct: 107 KLCESLGIEYVVKRTDIGQIVFDIRKEENPCSLCARMRRGALHDEAKAHGCNKIALGHHY 166 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET M +G + L L + RP + +++R ++ + Sbjct: 167 DDAVETFVMNLF----NEGRIGCFSPKSYLSRKELTLIRPLVFAPEKEVRRASVRCELPI 222 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + D R + + F+R+++ + K + F +R Sbjct: 223 VKSVCPADGVTNRQKTKEFLREMERESDGFKFRLFGAMRRA 263 >gi|21704170|ref|NP_663557.1| cytoplasmic tRNA 2-thiolation protein 1 [Mus musculus] gi|81879991|sp|Q99J10|CTU1_MOUSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|13543164|gb|AAH05752.1| ATP binding domain 3 [Mus musculus] gi|74199268|dbj|BAE33164.1| unnamed protein product [Mus musculus] Length = 420 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + V SGG DS L L + I ++VD + + V Sbjct: 48 LPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 104 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119 +R + ++V++++ + A AR R + E A+ + A Sbjct: 105 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 164 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I+T H DD ETV M R A + + G+ + L RP ++++ Sbjct: 165 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R++ + + R R ++ ++ Sbjct: 224 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 256 >gi|291549866|emb|CBL26128.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus torques L2-14] Length = 238 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 18/216 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I V VSGG DS+ LL A+ +L + + + SAI+ + + + + V+D Sbjct: 23 GDRIAVGVSGGKDSLTLLYAMK-LLQEFYPKRFELSAITCNVGF-----EGMDFTGVADF 76 Query: 77 CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C L I + V+ + ++ T + + R + + + + AH DD Sbjct: 77 CKHLEIPYEQVNTEIARIVFQENKDTRPCSLCAKLRKGAMYQRLGELGINKMAYAHNKDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET M +G + T L + + + RP + + F+ + I + Sbjct: 137 FIETALMSLI----YEGRFYAFPPVTELPEAGVTVIRPMMYVPERGVAHFVADQGIRVVK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R ++ + I+ K + + Sbjct: 193 NTCPVDGSTKRAYAKQLMEQINRETPGAKDRIMHAI 228 >gi|253582347|ref|ZP_04859570.1| ATPase [Fusobacterium varium ATCC 27725] gi|251835886|gb|EES64424.1| ATPase [Fusobacterium varium ATCC 27725] Length = 253 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 75/237 (31%), Gaps = 18/237 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SP+ + I V VSGG DS+ L AL + + + I + Sbjct: 26 SPVGRAMHKYNMIEAGDRIAVGVSGGKDSLTTLNALVRIKKIANL-DFEIIPIHIH---- 80 Query: 64 ETAKDEV-RYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116 + C +L + V K R ++ K Sbjct: 81 PNTDKASFEIIEKYCEKLELKLQVEHTNLSDMLFGEKEVKNPCFLCGRIRRGILYRVMKE 140 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + H DD +ET M +G + + + + RP +D Sbjct: 141 QGINKLALGHHKDDIIETFLMNVF----YQGNMKMMKPCYLSEEYGVTVIRPLAFVEEKD 196 Query: 177 IRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 I ++ + + + P + R+R++ +++I L ++ F ++ +N Sbjct: 197 IIRYVNKLELPVVKSDCPYEISENSRRLRIKNLIKEISLENKDVRSVIFNSIKELLN 253 >gi|86149582|ref|ZP_01067812.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597177|ref|ZP_01100412.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218561799|ref|YP_002343578.1| hypothetical protein Cj0118 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839850|gb|EAQ57109.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190238|gb|EAQ94212.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359505|emb|CAL34289.1| conserved hypothetical protein Cj0118 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315926944|gb|EFV06306.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929914|gb|EFV09073.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 305] Length = 251 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192 >gi|288572799|ref|ZP_06391156.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568540|gb|EFC90097.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 244 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 13/214 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 H++V +SGG DS+ LL+AL + S K SA SVD + D +C Sbjct: 27 GDHVVVGLSGGKDSVFLLVALSQIRR-WSPVKFDLSACSVD--ISGGNWDVSPM-EKLCY 82 Query: 79 RLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I + VV + + + R +++ +AK + + H DD +E Sbjct: 83 ELEIPYKVVPHPIEEIIRIREERSPCSFCANMRRGILNSYAKEMGGNTVALGHNLDDAVE 142 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T M R G S + ++ + RP L + I + + Sbjct: 143 TALMNLFR----TGRFRSFQPRIWQSNSDMNLIRPLLYLTEKAILQETSRMELPLVRYTC 198 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ER R + V D+ +K LR Sbjct: 199 PFSLETERTRAKELVSDLTARFPDVKQNILHALR 232 >gi|67516337|ref|XP_658054.1| hypothetical protein AN0450.2 [Aspergillus nidulans FGSC A4] gi|40747393|gb|EAA66549.1| hypothetical protein AN0450.2 [Aspergillus nidulans FGSC A4] gi|259489303|tpe|CBF89461.1| TPA: PP-loop ATPase superfamily protein, putative (AFU_orthologue; AFUA_1G04710) [Aspergillus nidulans FGSC A4] Length = 422 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL +P I + SGG DS L L ++ ++R + +S+D +R D + V Sbjct: 46 SLFHPGERIAIGASGGKDSTVLASVLKTL-NERYEYGLDLCLLSIDEGIRGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + G R + A+ + + Sbjct: 105 KRNAVQYNMPLVIVGYGELYGWTMDQVVEQIGKKGNCTYCGVFRRQALDRGAERLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + + D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 223 HHKQLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|289620220|emb|CBI53078.1| unnamed protein product [Sordaria macrospora] Length = 789 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSD--------------RSFGKI--KFSAISVDHCL 62 + A+SGG DSM L + + D R I K A+ +DH L Sbjct: 40 HRQVACAISGGVDSMALAFLFNRLKQDTHSLISSGPSMEAFRISDNILNKVRAVIIDHGL 99 Query: 63 RETAKDEVRYVSDVCSR-----LRIAHSVVSWK-------NSKPQTGLMAAAREARYALI 110 RE + +E R V++V L ++W+ + K Q + R+ RY Sbjct: 100 REGSDEEARKVANVIRTKFPDFLYPVIEPINWRSELGPGVDPKTQPNIETLGRKLRYVAF 159 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 + ++ NA + TAH DD+ ET+ MR +G+ I Sbjct: 160 ASACRSYNAVSLFTAHHEDDEYETILMRMISGRGYRGLQGIPPAADIP 207 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204 KG + + + D + I RP L ++ + + + +I W ED +N D F R + Sbjct: 282 KGGDVPPVPEVEAEDGGIMIYRPLLGFSKDRLTATCEENDIPWFEDYTNADPTFTPRNAI 341 Query: 205 RRFVRDIDLHALYLKMKKFQ 224 R V+ +L A K Q Sbjct: 342 RYLVKHHNLPAALQKPAILQ 361 >gi|325280659|ref|YP_004253201.1| PP-loop domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324312468|gb|ADY33021.1| PP-loop domain protein [Odoribacter splanchnicus DSM 20712] Length = 244 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 76/237 (32%), Gaps = 30/237 (12%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--R 71 L+ P ILV VSGG DS+ LL L + + A + E EV Sbjct: 26 ELIEPGDRILVGVSGGKDSLALLEVLA-LRARDPKQNYTVVAAHIAV---ENVAYEVDGE 81 Query: 72 YVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 YV C +L + ++ + + R + AK + H Sbjct: 82 YVRQFCEQLGVEFIHRTIATAVKEDSGKPVCFVCSWNRRKTLFGIAKEYGCNKLALGHHR 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS- 187 DD +E++ M G S ++D + RPF+ E+ + RN Sbjct: 142 DDAIESLLMSMM----FNGTIASMPPKLAMFDRTFTLIRPFIYLTDEETTRYAAYRNFKK 197 Query: 188 -----WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 E +N R V +I L +L + N + +P Sbjct: 198 QKKNCPHERATN----------RHAVAEIIRQMEALSPHVKGNLFAAMKNIQSEYLP 244 >gi|157414431|ref|YP_001481687.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385395|gb|ABV51710.1| hypothetical protein C8J_0111 [Campylobacter jejuni subsp. jejuni 81116] gi|307747075|gb|ADN90345.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni M1] gi|315931512|gb|EFV10479.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 327] Length = 251 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRDNATQNELSVI 192 >gi|170759818|ref|YP_001788613.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406807|gb|ACA55218.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] Length = 249 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 15/217 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + + I VAVSGG DS+ LL L ++ I+ AI VD Sbjct: 12 FLKYVRRAMDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTDIKDIEIVAIHVDLG 70 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAK 115 L ++ + C + + + N + + + + + + +K Sbjct: 71 L----DMDLEPLKIFCKKNSVDLVIEKTNIANVVFNERKEKNPCSLCSKLKKGCLVRISK 126 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +I AT I H DD +ET++M + + G + Y + I RP + R + Sbjct: 127 SIGATKIALGHNCDDVIETLFMNVLK-VGKFGSFSPHIDYKNKY---VHIIRPLIYLRED 182 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 I++ + + N+ + D + R ++ + ++ Sbjct: 183 LIKNLVKKYNLPVVKSTCPEDKKTTREEMKNLMFKLE 219 >gi|283955284|ref|ZP_06372784.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp. jejuni 414] gi|283793198|gb|EFC31967.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp. jejuni 414] Length = 251 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L+ L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALVHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEQGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R +Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNAVQNELSVI 192 >gi|292670148|ref|ZP_06603574.1| ExsB family protein [Selenomonas noxia ATCC 43541] gi|292648100|gb|EFF66072.1| ExsB family protein [Selenomonas noxia ATCC 43541] Length = 260 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 17/217 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + IL+ VSGG DS+ L AL +L +R +A +V+ Sbjct: 10 FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFYIAAFTVN-- 65 Query: 62 LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 + ++ C L I + VV ++ R ++ +A Sbjct: 66 --PQFDKVFDTGSIAAFCKNLNIPYEVVDVDIAGAIAAQNDKSPCFTCAFFRRGAVNRYA 123 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + AH DD +ET M G + T L ++ + RP + R Sbjct: 124 VAHKMNKVAYAHHHDDAVETFLMSLF----YSGQLSTFRPKTYLDKTDITVIRPLVYFRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 ++I + + + P + R V+ + + Sbjct: 180 QEIINAVQYHGFTPIPSPCPHNGNTTRQTVKELIAKL 216 >gi|205356493|ref|ZP_03223257.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp. jejuni CG8421] gi|205345680|gb|EDZ32319.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp. jejuni CG8421] Length = 251 Score = 111 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHTHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192 >gi|237749968|ref|ZP_04580448.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229374379|gb|EEO24770.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 295 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 20/228 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DSM LL + + + + K +F A+++D+ R E Y+ + C Sbjct: 67 GDKILLGLSGGKDSM-LLATIFAYMKKHAPFKFEFLAMTIDYG-RGG---EYEYIFEYCK 121 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + + + K T + R + A I AH DD Sbjct: 122 KLNIPYELNRTQIFKILENHKKEGTIYCSFCSRMRRGELYSMALERGFNKIALAHHLDDA 181 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ M + A L M L + RP + R I F+ NI D Sbjct: 182 AESFMMNLTYNGA-----LRSMPPYYKAQNGLGVIRPLIFVRERQIIDFIASNNIYIAPD 236 Query: 192 ---PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N +R + R +++ F+ L+ +N A Sbjct: 237 CNCPINWLPEDKRPKARAANKELLKDLESKNPNLFKSLKNAFSNIHAQ 284 >gi|121533524|ref|ZP_01665352.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1] gi|121308083|gb|EAX48997.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1] Length = 266 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 14/215 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VSDVC 77 IL+ +SGG DS L AL +L D S K + +AI++D + D ++ C Sbjct: 26 GDRILIGLSGGKDSSFLTYALA-LLRDHSPRKFELAAITLDPMF---STDFATAGLAAFC 81 Query: 78 SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + L I + R I+ AK I AH DD + Sbjct: 82 ADLGIPFHTFKIDIAGAIARNDGKDPCYSCAFFRRGAINRFAKENGFNKIAYAHHHDDAV 141 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M K + + T L L + RP + R +++R + + P Sbjct: 142 ETFLMSILYSGQIK----TFLPKTYLDRTGLTVIRPLIYFREKELRRTIQYHGFTPIPSP 197 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + + +R ++ +R ++ + +R Sbjct: 198 CPYNGKTKRQEIKELIRGLERKNKLIYTHLSAAMR 232 >gi|18313243|ref|NP_559910.1| hypothetical protein PAE2295 [Pyrobaculum aerophilum str. IM2] gi|18160762|gb|AAL64092.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 324 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 28/211 (13%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F S V +RS +V ++ +AVSGG DS+ LL L + + G +K A + Sbjct: 28 LFRSVERKVVETIRSEKLIVPGDYVAIAVSGGKDSLVLLYILGRLKERGTLGGVKMEAFT 87 Query: 58 VDHC------LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------ 105 ++ R + +D YV D+ S+ I ++V +K+ T + + R A Sbjct: 88 INEGHPYSCFYRMSRRD---YVRDLASKFGIEYNVYHFKDIFGVTAMELSERLAKAGHEV 144 Query: 106 ---------RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156 R ++ K T I TAH DD+ +TV + + D Sbjct: 145 HMCTIDGVLRRRAMNIIGKARGWTKIATAHNLDDEAQTVMLNVLMGNLSRFSWYGRYEDA 204 Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DL + +P R E+I + + Sbjct: 205 EEKDL-IPRIKPLKYIREEEIALYAYYHGLP 234 >gi|226711412|sp|A2Q879|CTU1_ASPNC RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|134054862|emb|CAK36876.1| unnamed protein product [Aspergillus niger] Length = 341 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL +P + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 SLFHPGERVAIGASGGKDSTVLAAVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS + G R + A + + Sbjct: 105 KRNAQQYNMPLVIVSYGDLYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + + D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R + + R R ++D++ Sbjct: 223 HHRQLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|313681900|ref|YP_004059638.1| pp-loop domain protein [Sulfuricurvum kujiense DSM 16994] gi|313154760|gb|ADR33438.1| PP-loop domain protein [Sulfuricurvum kujiense DSM 16994] Length = 252 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 17/189 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ILV +SGG DS+ ++ AL R+ K + A++V + + +++ + C+ Sbjct: 26 GDRILVGLSGGKDSLTMVHALRE-QQRRAPFKFEILAVTVTYGM----GEDLSALIAHCA 80 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H + ++ + + + R + AK + H DD Sbjct: 81 EHEIPHKIYETNTYEIAADKIRQNSSFCSFFSRMRRGALYSAAKEYGCNKVALGHHLDDA 140 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ +M + + + L + RP ++ R + + L+ + D Sbjct: 141 AESFFMNLIYNGHMR-----ALAPKYKAGNGLIVIRPLIQLRERQLAACALENEMPTIGD 195 Query: 192 PSNTDDRFE 200 + RF+ Sbjct: 196 EACPSMRFD 204 >gi|187935562|ref|YP_001886423.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B] gi|187723715|gb|ACD24936.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B] Length = 239 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 16/211 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS+ LL L++ S + AI+++ + + + +C Sbjct: 21 GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQNFELIAITLNPGGVDNSP-----LYKLCE 74 Query: 79 RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + K + + R + +A+ + + H DD L Sbjct: 75 NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHNAEKLGCNKVALGHHKDDAL 134 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + +G T+++ + + RP + +I+S + + N ++P Sbjct: 135 ETLMLSMC----YEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIKSIVKKFNFPVIKNP 190 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 D + +R V+ + +++ K F Sbjct: 191 CPADGKTKRQDVKELIDELNNKIPGFKKNLF 221 >gi|268610850|ref|ZP_06144577.1| PP-loop domain-containing protein [Ruminococcus flavefaciens FD-1] Length = 248 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76 I V VSGG DSM +L L + R F I + ++D C K + +SD Sbjct: 21 GDRICVGVSGGKDSMVMLYGLALL---RRFIGINYDIAGLTLDPCF-GGVKGDYSAISDF 76 Query: 77 CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C+ I + VV + + + + + R + K + I H +DD Sbjct: 77 CAEHDIEYHVVETQIGEIVFDVRKEPNPCSLCARMRRGALHNETKKLGCNKIALGHNYDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET M +G L + + RP + + IRS L+ + + Sbjct: 137 AVETFIMNLF----TEGRIGCFAPTNYLSRKEITLIRPLVFAPEKAIRSAALRNQLPIVK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 D R R + F+ +++ K + F +R Sbjct: 193 SVCPADGHTNRQRTKEFLEEMERKDKGFKDRIFGAMRR 230 >gi|317026023|ref|XP_001388768.2| cytoplasmic tRNA 2-thiolation protein 1 [Aspergillus niger CBS 513.88] Length = 415 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL +P + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 SLFHPGERVAIGASGGKDSTVLAAVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS + G R + A + + Sbjct: 105 KRNAQQYNMPLVIVSYGDLYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + + D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R + + R R ++D++ Sbjct: 223 HHRQLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|294496034|ref|YP_003542527.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] gi|292667033|gb|ADE36882.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] Length = 305 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 20/233 (8%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F +E V+ +R ++ I VA+SGG DS L L+ + R ++ AI+ Sbjct: 31 FSEDVERKVKLTIRKNYNIGKNEKIAVALSGGKDSCVALYILNKIFGKRR--DLELVAIT 88 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------R 106 VD + + + Y + S + + H + S+ + + AA+E R Sbjct: 89 VDEGISVYRERSIEYARKLTSDIGVKHLIHSFADEYDTSLDELAAKERVHGACSYCGVLR 148 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 +L++ A I A ++T H DD+ +T+ M E+ + + + + + Sbjct: 149 KSLVNRIALDIGAKRLVTGHNLDDEAQTIMMNHLGGDVER---MIRLSPPRELEGLVLRA 205 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +P + ++ + +I R VR + D + K Sbjct: 206 KPLRKIPENEVELYAKVNDIPVDISLCPYKHEALRNEVRLMLDDFEQRHPGTK 258 >gi|148557402|ref|YP_001264984.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1] gi|148502592|gb|ABQ70846.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1] Length = 319 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 117/307 (38%), Gaps = 27/307 (8%) Query: 9 VRFFVRSLVY-----PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 V F+ L+ A + +AVSGG DS + + + + A +VDH LR Sbjct: 14 VSRFLADLLSLLPDDGARLGLAVSGGPDS------MAMLHLAAAACPGRVEAATVDHGLR 67 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 A E V+ C+ L + H + +P + AAAR ARYA ++ A I Sbjct: 68 AEAAAEAALVARACAALGVPHMTLRVTV-EPTASIQAAARRARYAALAAWAAGQGLPAIA 126 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFL 181 TAH DDQ ET+ MR R G GLSG+ + + RP L RR ++ + + Sbjct: 127 TAHHADDQAETLLMRLAR-----GAGLSGLAGIRARRDIGGVLLVRPLLGWRRAELAAIV 181 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRVKVNNAVAML 237 + +DPSN D R +R R + +D L + ++ V Sbjct: 182 AA--VETVDDPSNADPRHDRTHARALLAGAGDRLDPLRLAASAAHLAEADAALDWLVEEA 239 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297 I + IA DI + + +L + P + + + Sbjct: 240 IRSRVDRFDDGRIA--ADIEGLPREVRRRILARLVGEADSAVDGPALETAMARLDAGQVA 297 Query: 298 KRGCVSI 304 G + + Sbjct: 298 SLGALKL 304 >gi|283955562|ref|ZP_06373057.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp. jejuni 1336] gi|283793023|gb|EFC31797.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp. jejuni 1336] Length = 251 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ ++ C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVIVIRPLIFVRERQLRDNATQNELSVI 192 >gi|313896328|ref|ZP_07829881.1| PP-loop family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975127|gb|EFR40589.1| PP-loop family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 260 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +V F + IL+ VSGG DS+ L AL +L +R +A +V+ Sbjct: 10 FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFSIAAFTVN-- 65 Query: 62 LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 + + ++ C L +++ VV ++ R ++ +A Sbjct: 66 --PQFDEPFDTDAIAAFCKSLDVSYEVVDVDIAGTIAAQDDKSPCFTCAFFRRGTVNRYA 123 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 N + AH DD +ET M G + T L NL + RP + R Sbjct: 124 AEHNMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLERTNLTVIRPLVYFRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +++ + + P + R V+ + + + L +R Sbjct: 180 QELIDAIRYHGFTPLPSPCPHNGNTTRQTVKELIARLGMENPLLYDHLSAGMR 232 >gi|121702849|ref|XP_001269689.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus NRRL 1] gi|119397832|gb|EAW08263.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus NRRL 1] Length = 417 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 16/213 (7%) Query: 13 VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 SL YP + + SGG DS L L ++ ++R ++ +S+D +R D + Sbjct: 44 ASSLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIRGYRDDSLE 102 Query: 72 YVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 V + + +V + G R + A + Sbjct: 103 TVKRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIK 162 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++T H DD ETV M R + G S + D+ D + S+P ++I Sbjct: 163 HVVTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVL 220 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R ++D++ Sbjct: 221 YAHHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|307701216|ref|ZP_07638238.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16] gi|307613610|gb|EFN92857.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16] Length = 400 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 108/297 (36%), Gaps = 42/297 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L A + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134 A V+ + + G +ARE R+ L++ A + + + T HT DDQ ET Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166 Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILY---------DLNLWISRPFLRCRRE 175 V +R R + + G+ D+ +WISRP L RRE Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRRE 226 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226 Q + DP+N + RV +R+ V AL QD Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 + + + + + + + ++ + + LR+ + G +P Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337 >gi|160915129|ref|ZP_02077342.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991] gi|158432928|gb|EDP11217.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991] Length = 319 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 106/307 (34%), Gaps = 40/307 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73 I V VSGG DSM LL ALH + + I + + RE V Sbjct: 23 GDRIAVGVSGGKDSMVLLSALHMYSKFKG-KNFQVVGIHIKLGFPNMDFRE--------V 73 Query: 74 SDVCSRLRIAHSVVSWKN-----SKPQTG---LMAAAREARYALISEHAKTINATLIMTA 125 C +L I ++ K P + + + A + E AK N + Sbjct: 74 VSYCEQLGIEFHIIDSKVYEILQKHPDANGNIKCSLCSKFKKATVIEAAKQFNCHKVAFG 133 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+ M + G + + ++ RP + EDI + N Sbjct: 134 HHSDDAVETLLMNAIFG----GKLAVFLPKMYMSRTDITFIRPLIYAFEEDILIAQQKNN 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPKY 241 I + E + +D F + R+ ++++ LH Y K FQ++ V + Sbjct: 190 IPYVE-STCPNDGFTQ---RQEMKEM-LHEFYKKYPMARYNFQNMLSN-EEQVELWHKTT 243 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--R 299 V R+ Q +L L R I + LP R + + + + Sbjct: 244 ARVAKRNHDKPMQILLEEQDLQLGQRGRHFFLIYSPK-QLPDLRH-HKKIPHSDADRLLS 301 Query: 300 GCVSIGR 306 +++ Sbjct: 302 KQLTLHD 308 >gi|313112922|ref|ZP_07798568.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624827|gb|EFQ08136.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 259 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 16/220 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYV 73 + ++V VSGG DS+ L I L + F A+++D R + + Sbjct: 24 IAPGDKVMVGVSGGKDSVALTIGLAELRKYIGF-DFTVQAVTLDPQFGGRP---MDYTVL 79 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ ++ I + + + + + + A + R + A+ + + H Sbjct: 80 QELFAQYDIPYEIRRTEIGPVVFDYRKEKNPCALCAKLRRGALHTAAQELGCNKVALGHH 139 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET YM R +G T L +L + RP L +++ S + + Sbjct: 140 LDDAVETFYMNLWR----EGRIGCFSPVTYLSRRDLTLIRPMLLATEQEVISAVNAEGLP 195 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + D R + + FV++ + K L+ Sbjct: 196 IVKSVCPADGVTVREQTKEFVKERCRTDHAFRQKTLHALQ 235 >gi|306819511|ref|ZP_07453218.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304647803|gb|EFM45121.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 400 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 108/297 (36%), Gaps = 42/297 (14%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L A + R A++VDH R + E + L Sbjct: 48 LVVALSGGPDSLA-LAAGLLRAASRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106 Query: 82 IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134 A V+ + + G +ARE R+ L++ A + + + T HT DDQ ET Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166 Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILY---------DLNLWISRPFLRCRRE 175 V +R R + + G+ D+ +WISRP L RRE Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRRE 226 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226 Q + DP+N + RV +R+ V AL QD Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283 + + + + + + + ++ + + LR+ + G +P Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337 >gi|297617269|ref|YP_003702428.1| PP-loop domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145106|gb|ADI01863.1| PP-loop domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 235 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%) Query: 5 PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R 63 ++ + + + + +SGG DS+ LL AL + + + AI+VD Sbjct: 11 KVKRANLKYQMIGNGDRVALGLSGGKDSLALLHALIQLRR-YTPLQFDIIAITVDLGFGS 69 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTI 117 + + E C L + V + + + R + A Sbjct: 70 DHSGLE-----QHCRELNVPLIVEPTNIGRIVFEERKENSPCSLCSNLRKGALHRVALAE 124 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 N + AH DD + T +M A +G + L L + RP + I Sbjct: 125 NCNKVALAHHLDDAVVTFFMSM----AYEGQARCFKPSSFLDRTGLTLVRPLVYVPENLI 180 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N+ +P + +R +++++ +D H K+ + Sbjct: 181 IRLCKKLNLPVESNPCPAAGQTKRALIQKWLAVLDNHHPQAKLHFLTAIE 230 >gi|254459104|ref|ZP_05072527.1| PP-loop family protein [Campylobacterales bacterium GD 1] gi|207084375|gb|EDZ61664.1| PP-loop family protein [Campylobacterales bacterium GD 1] Length = 253 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 17/181 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ILV +SGG DS+ ++ A+ R+ K +F A++V + + E + ++ C Sbjct: 27 GDKILVGLSGGKDSLTMIHAMKE-QQHRAPFKFEFIAVTVGYGMGENFDNLAKH----CK 81 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + V ++ + + + + R + A+ + H DD Sbjct: 82 EYDIPYIVHDTKIYDLAEEKIRKNSSFCSFFSRMRRGTLYGIAEEQGCNKLALGHHMDDA 141 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ +M + + + + L I RP ++ R + +F+L +I+ D Sbjct: 142 AESFFMNFIYNGQMRSL-----APKYRAENGLIIIRPLIQMRERQLSAFVLDNDIAAIGD 196 Query: 192 P 192 Sbjct: 197 E 197 >gi|238922390|ref|YP_002935904.1| hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750] gi|238874062|gb|ACR73770.1| Hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750] Length = 242 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 81/216 (37%), Gaps = 18/216 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I V VSGG DS+ LL A+ +L+ K + AI+ + + + + V Sbjct: 23 GDKIAVGVSGGKDSLALLHAMK-ILNRFYPKKFELYAITCNVGF-----EGMDFTGVRKF 76 Query: 77 CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 C + + + V + +K + + R + + + I AH DD Sbjct: 77 CESINVPYEQVDTEIAKIVFEDNKDERPCSLCAKLRKGAMYKRLGELGINKIAYAHNKDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET M +G + T L + + + RP + + + +F++ + I + Sbjct: 137 FIETALMSLI----YEGRFYAFPPVTYLPEAGVTVIRPMMYAPEKGVANFVINQGIKVVK 192 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R ++ + I+ K + + Sbjct: 193 NTCPVDGSTKREYAKQLMEQINRENPGTKDRIMHAV 228 >gi|268679168|ref|YP_003303599.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617199|gb|ACZ11564.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 250 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 25/222 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 IL+ +SGG DS+ L L + F +F A+++ + + +E+ + C Sbjct: 25 GDRILLGLSGGKDSLSLAHILKHMQRVAPF-DFEFKAVTITYGM----GEELDTLHQHCV 79 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I H +V K + + + R + +A T + AH DD Sbjct: 80 EHEIDHEIVDTKIFDLAQDKIRENSSFCSFFSRMRRGALYTYALEYGYTKLALAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +E+ +M + L M L + RP + R +R + N+ D Sbjct: 140 VESFFMNFSYNGT-----LRSMPPIYTAQNGLHVIRPLIHARERQLRDCAKEHNMPTIGD 194 Query: 192 PSNTDDRFE------RVRVRRFVRDIDL--HALYLKMKKFQD 225 + RF+ R R + + ++ L++ +KK + Sbjct: 195 EACPAMRFDVKMPVIRTRTKEMLAQMEQENPELFISLKKAFE 236 >gi|303388765|ref|XP_003072616.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis ATCC 50506] gi|303301757|gb|ADM11256.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis ATCC 50506] Length = 316 Score = 110 bits (276), Expect = 4e-22, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 17/224 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + I + VSGG DS L L +L+ R I+ +SVD + + V Sbjct: 43 KMFKEGDKIGIGVSGGKDSTVLAYVL-DLLNKRHKYGIELILLSVDEGIAGYRDHSIETV 101 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +VS++ + + G R + E A+ + +I Sbjct: 102 CKNSKSFGLKLRIVSFEEIFGVTMDGIAHKTGKRGNCTYCGVFRRQALEEAAREMGVDMI 161 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDI 177 T H DD ETV + R + + + + + +PF +++I Sbjct: 162 ATGHNADDMAETVLLNVIRGDISRLGRCTREKTKEQKNGDGKVISLSRLKPFKHIYQKEI 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 + + + + R +R V+ ++ + ++ Sbjct: 222 VLYAFYKKLEYFSTECTYSFGASRGDLRMLVKQLEREDPRVILE 265 >gi|157819969|ref|NP_001099721.1| cytoplasmic tRNA 2-thiolation protein 1 [Rattus norvegicus] gi|226711429|sp|B1WBV0|CTU1_RAT RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|149056111|gb|EDM07542.1| ATP binding domain 3 (predicted) [Rattus norvegicus] gi|171847383|gb|AAI61898.1| ATP binding domain 3 [Rattus norvegicus] Length = 382 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + V SGG DS L L + I ++VD + + V Sbjct: 48 LPQGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 104 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119 +R + ++V++++ + A AR R + E A+ + A Sbjct: 105 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 164 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I+T H DD ETV M R A + + G+ + L RP ++++ Sbjct: 165 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R++ + + R R ++ ++ Sbjct: 224 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 256 >gi|126460252|ref|YP_001056530.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249973|gb|ABO09064.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548] Length = 327 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 31/222 (13%) Query: 4 SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 +E++R L+ P + VAVSGG DS+ LL L + + ++ A +++ Sbjct: 36 KVVETIRK--EWLIVPGDYVAVAVSGGKDSLVLLYILGKLRERGALRGVRLEAFTINEGH 93 Query: 62 -----LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA----------- 105 R + +D YV ++ + + ++V +K+ T + + R A Sbjct: 94 PYSCFYRMSRRD---YVRELAEKFGVEYNVYHFKDIFGVTAMELSERLAKAGHEVHMCTI 150 Query: 106 ----RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 R ++ K T I TAH DD+ +TV + + G+ + Sbjct: 151 DGVLRRRAMNIIGKRRGWTKIATAHNLDDEAQTVMLNVLMGNLGRFAWF-GLYEDAEEKD 209 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---TDDRFE 200 + +P R E+I + I E + R++ Sbjct: 210 LVPRIKPLKYIREEEIALYAYYHGIPLMELECPYVVANPRYD 251 >gi|73670143|ref|YP_306158.1| hypothetical protein Mbar_A2672 [Methanosarcina barkeri str. Fusaro] gi|72397305|gb|AAZ71578.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 302 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 26/236 (11%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ +E ++ +R S+ I VA+SGG DS L +H +L +R I+ AIS Sbjct: 28 FVEDVERKIKLTIRKEYSIRKNDMIAVALSGGKDSSVALYIVHKILGNR--PDIEIVAIS 85 Query: 58 VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--RE-------- 104 VD + R + + + L + H + S+K T AA RE Sbjct: 86 VDEGINGYRPHSLEVA---KSLTKMLGVRHIIKSFKEVHGVTMDELAAMDREKGACSYCG 142 Query: 105 -ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R +++ A I AT ++T H DD+ +T+ + R E+ + + + + Sbjct: 143 VLRKNILNRTALEIGATKLVTGHNLDDEAQTILLNHLRGDVER---MVRLAPPAAIEGLV 199 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++P +++ + L ++ R +R + + + K Sbjct: 200 LRAKPLRNIPEKEVALYALVNSLPVDFSECPYAGEALRGEIRELLNNFEAKHPGTK 255 >gi|171688800|ref|XP_001909340.1| hypothetical protein [Podospora anserina S mat+] gi|170944362|emb|CAP70472.1| unnamed protein product [Podospora anserina S mat+] Length = 773 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 32/229 (13%) Query: 2 FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52 FL + + RF I +A+SGG DSM L + + + K+ Sbjct: 20 FLDALHATCNPRFPYDRGRSHKPIALAISGGVDSMALAYLSTKIRTTDHWFKVADHPVSN 79 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQT--GLMAAAR 103 A V+H LR+ +EV V L+I V V K P T + AR Sbjct: 80 PVAFVVNHDLRKGMVEEVDQVIKALRGLKIFAYVAKIDWAQVLGKGVDPNTVPNIETLAR 139 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161 + RY + A+ ++TAH DDQ ET+ MR + +G+ I YD+ Sbjct: 140 QQRYRKLGTFARNCKTMSLLTAHHEDDQYETILMRLLSGHGYRGLRGMRPATDIPECYDM 199 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 + F+ +R ++ W P +R ER ++ R +RD Sbjct: 200 HGIYQSGFIDDQRS--------KHPVWNIYP----NRAERTKILRALRD 236 Score = 57.6 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 6/140 (4%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218 D + + RP L ++ + + L+ N+ W ED +N D R VR+ ++ L Sbjct: 289 DGGVMVYRPLLHFSKDRLIATCLENNVPWFEDHTNKDPTLTMRNAVRQMWKNHRLPEALQ 348 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD----ILNIDSTLLFYLLRVSAAI 274 K + + + ++ + L + +S+ Sbjct: 349 KPAILRLAERCRKRVAFEEAEADRLLQSALVPHFEPSTGTLVVQLPKFRLPRVSGLSSKS 408 Query: 275 CGG-QISLPGYRSMERVMLF 293 GG Q L +R + ++L Sbjct: 409 PGGRQKRLDHHRYIAALLLR 428 >gi|218884033|ref|YP_002428415.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] gi|218765649|gb|ACL11048.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 19/244 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E++R + R + +++AVSGG DSM LL L V R G + + ++ + Sbjct: 34 RVVETIRKY-RMIKPGDSVVIAVSGGKDSMSLLTVL--VKQARELGIREVIGLHLNLGIG 90 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112 ++ V + C RL + V+ ++ + A +AR + + Sbjct: 91 GFSELVESVVREYCERLGVKCHVIRLRDL-LGLSISELASKARRPPCSVCGLVKRYIFTV 149 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 T+NA++++T H DD ++ L+ + + + +RP + Sbjct: 150 STMTVNASVLVTGHHLDDVVKYALKNIYVG---DYRSLASLKPVSVEEGLPVKARPLISV 206 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKVN 231 DI ++ I + E + + VR F+ +++ K+ + ++ Sbjct: 207 GERDIETYAKLSGIPYVEAKCPFKHEGDAEKAVRVFISELEESNPGAKLTLLSSISKLIH 266 Query: 232 NAVA 235 + Sbjct: 267 EYIE 270 >gi|294102346|ref|YP_003554204.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261] gi|293617326|gb|ADE57480.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261] Length = 259 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 23/219 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HCLRETAKDEVRYV 73 ILV +SGG DS+ L+A + +S + + A +VD R + Sbjct: 34 GDRILVGLSGGKDSLF-LLAALAAFRKKSPRRFELGACTVDITGGEMATRP--------L 84 Query: 74 SDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 S+ C L + H V + + + R +IS A ++ H Sbjct: 85 SEFCRSLNLEHYVTIYPISKIIKKREEKSPCSFCANIRRGIISSEAVERGYNVLALGHNL 144 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD ETV M + G S LW+ RP + +DI + ++ Sbjct: 145 DDVAETVLMNLF----QTGRFKSFKPKFWQSRTGLWVIRPLIYIGEKDIMKEAQRLHLPV 200 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ED +R R R + ++ +K L Sbjct: 201 TEDKCPFSLHTQRSRTRMLIENLARENPSIKKNIIHALS 239 >gi|11465460|ref|NP_045149.1| hypothetical protein CycaCp132 [Cyanidium caldarium] gi|61216752|sp|Q9TLW9|TILS_CYACA RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|6466363|gb|AAF12945.1|AF022186_68 unknown [Cyanidium caldarium] Length = 314 Score = 109 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 9/208 (4%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++ +SGG DS+ LL L FG +K + DH R + + + + Sbjct: 23 KRKFVLGLSGGQDSLALLKLLCDYRKTY-FGLLKL--VYCDHRWRLESIANAQRLYYLSE 79 Query: 79 RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 I+ + + +R RY + + + + + ++TAHT D ET R Sbjct: 80 YSNISFY---YFATSTFLSSETQSRTWRYKNLLKISLSFEYSYLLTAHTLSDISETTIYR 136 Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R+ + ++ + T LY L ISRP R D + D +N Sbjct: 137 LVRN--LRISEINNLLFTFLYIKKTLSISRPLASVTRNDTYWLCSLSYLPLWSDYTNYWL 194 Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQD 225 R R+R+ + + ++++ D Sbjct: 195 FLSRNRIRQELFPYLKNYFNCSLERYLD 222 >gi|152990952|ref|YP_001356674.1| hypothetical protein NIS_1208 [Nitratiruptor sp. SB155-2] gi|151422813|dbj|BAF70317.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 253 Score = 109 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 17/206 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I L +LV +SGG DS+ L+ AL + + F A+++ + Sbjct: 10 LIKQIARTNVEFELLKEGDRVLVGLSGGKDSLTLVHALKHIQRVAPY-DFTFKAVTISYG 68 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHA 114 + E +++ C I H+V ++ + + + + R + +A Sbjct: 69 MGENYD----FLTKHCEEYGIEHTVYETEIFDLAKEKIRTNSSYCSFFSRMRRGALYTYA 124 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + H DD +E+ +M + A + M L++ RP + R Sbjct: 125 LQNGFNKLALGHHLDDAIESFFMNMFYNGAMRS-----MPPIYKSSKGLYVIRPLIETRE 179 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE 200 + +R F+ + D RF+ Sbjct: 180 KQLRGFVERNGFMAIGDEMCPAMRFD 205 >gi|41406536|ref|NP_959372.1| hypothetical protein MAP0438 [Mycobacterium avium subsp. paratuberculosis K-10] gi|61216573|sp|Q744A3|TILS_MYCPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|41394885|gb|AAS02755.1| MesJ [Mycobacterium avium subsp. paratuberculosis K-10] Length = 320 Score = 109 bits (274), Expect = 6e-22, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 23/260 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 VA+SGG DS+ L + +A+ VDH L+ + + L Sbjct: 27 RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + V + + GL AAAR A ++ HT DDQ ETV + Sbjct: 79 GCVAAQVISVHVDGEGGLEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 R + + + RP L RR + + ++ +DP N+D RF Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFA 187 Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 R R+R V + L + + + N + L + L + Sbjct: 188 RARLRAEVLPLLEEVLGGGVVEALARTATALREDNELLDALAERALPAARAGAGLQVAAL 247 Query: 257 LNIDSTLLFYLLRVSAAICG 276 +D+ + ++R G Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267 >gi|213408567|ref|XP_002175054.1| ATP-binding domain-containing protein [Schizosaccharomyces japonicus yFS275] gi|212003101|gb|EEB08761.1| ATP-binding domain-containing protein [Schizosaccharomyces japonicus yFS275] Length = 347 Score = 109 bits (274), Expect = 7e-22, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 20/206 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + SGG DS L + +L++R +K ISVD +R D + V + Sbjct: 60 IGIGASGGKDSTVLAYVMK-LLNERYDYGLKLHLISVDEGIRGYRDDSLATVKRNQQQYE 118 Query: 82 IAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + ++VS++ R + A ++ I+T H D Sbjct: 119 LPMTIVSYEELYDGWTMDRIVSKIGAKNNCTYCGVFRRQALDRAALSLGIKHILTGHNAD 178 Query: 130 DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 D ETV M R + ++ M +T + +PF ++I + + + Sbjct: 179 DIAETVLMNLLRGDIARLPRSTEITTMSETSPTKRS----KPFKYTYEKEIVLYAHYKKL 234 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++ ++ Sbjct: 235 DYFSTECTYSPEAFRGTARALIKQLE 260 >gi|329955512|ref|ZP_08296420.1| PP-loop family protein [Bacteroides clarus YIT 12056] gi|328525915|gb|EGF52939.1| PP-loop family protein [Bacteroides clarus YIT 12056] Length = 250 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 26/225 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + K A+ V + + + Y+ + Sbjct: 31 GDRILIGLSGGKDSLALVELLAR-RARVFKPKFSVVAVHVVMKN--IPYQSD--AEYLRN 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + ++ + R + AK I H DD L Sbjct: 86 FAESWGVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTIAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED------IRSFLLQRNI 186 ET+ M +G S ++ ++ I RP D IR + Q Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLIELARIRDYRKQMKN 201 Query: 187 SWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKV 230 E S+ + + + +++ A Y +++ ++ Sbjct: 202 CPYESQSSRSTM----KGILHQLEEMNPEARYSLWGSMSNVQDEL 242 >gi|218779090|ref|YP_002430408.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760474|gb|ACL02940.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01] Length = 252 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 14/225 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + V +SGG DS L+ L LS R K I +D +++ DE ++ Sbjct: 34 IQEGDRVAVGISGGKDSFTLMWILRERLS-RIPVKYHLEGIHIDPGFDDSSADE---IAQ 89 Query: 76 VCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 C + V + + + + R + E A+ + T I H D Sbjct: 90 YCESMNYRLRVEKTDFGIRAHSDENRENPCFLCSRLRRQRLFELAQEMGCTKIALGHHKD 149 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET++M G + + + + RP ++I F N+ Sbjct: 150 DLIETLFMNMC----YTGEIATMKPYQEFFGGEITVIRPLAYTDEKNIAYFARAMNMPEI 205 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 E+ T +R +++ + + ++ F+ + + + Sbjct: 206 ENACPTSGASKREEIKQLLEGLYKQNPKIRGNLFRSMSRVKTDYL 250 >gi|88603458|ref|YP_503636.1| hypothetical protein Mhun_2212 [Methanospirillum hungatei JF-1] gi|88188920|gb|ABD41917.1| Protein of unknown function UPF0021 [Methanospirillum hungatei JF-1] Length = 309 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 90/253 (35%), Gaps = 25/253 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 VR ++ + P + VA SGG DS LL L + RS A++VD + Sbjct: 37 NEVRRYLITKRLPKTLGVAFSGGKDSTALLKVLSEI---RSEFPSSIIALTVDEGIEGYR 93 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKT 116 +D +R ++ C LRI H ++ +++ S + R + A+ Sbjct: 94 QDTIRAATETCLTLRIPHEIIRFQDLYGHSLDHLVSGSERNACTICGILRRRALEVLAQK 153 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 T+I T H DD +T M + K +G + Y +PF R ++ Sbjct: 154 HKITMIATGHNQDDHAQTTVMNAISGDVRKI--FTGYEPSSWYAQR---IKPFARVSEKE 208 Query: 177 IRSFLLQRNISWCED--PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVN 231 + + L + +D R VR + + + ++R ++ Sbjct: 209 VTLYALLSGL--FKDLSECPYAVSSLRGEVRTLLYQYEQKHPGAMRNAARCEEEIRERLG 266 Query: 232 NAVAMLIPKYLTV 244 K ++ Sbjct: 267 EIYQQEAYKTCSI 279 >gi|324517150|gb|ADY46738.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum] Length = 348 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 23/257 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L+++ +G ++ +S+D ++ D ++ V Sbjct: 47 RGEKVAIGASGGKDSTVLAYLLNTLNKRYDYG-VELLLLSIDEGIQGYRDDSLKAVERNR 105 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +S+K+ R + A + A ++T H Sbjct: 106 LQYGLPLTTLSYKDLYGWTMDEIVAKIGTKNNCTFCGVFRRQALDRGALMLGANKLVTGH 165 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + C TI+ + + R P +DI + + Sbjct: 166 NADDMAETVLMNLLRGDIAR----LQRCATIVTGSDDCLPRAKPLKYTLEKDIVMYAHFK 221 Query: 185 NISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + + C N + R V + + I A+ ++ +DL ++ A+ L Sbjct: 222 KLDYFSTECIYAPNAYRGYARNFV-KELERIRPRAILDLIRSGEDLAIRGEIALPTLTKC 280 Query: 241 YLTVHMRSIIAISQDIL 257 ++ S + +L Sbjct: 281 ERCGYISSQMLCKACLL 297 >gi|302784632|ref|XP_002974088.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii] gi|300158420|gb|EFJ25043.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii] Length = 349 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 16/207 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A SGG DS L L + + R + +S+D + D + V Sbjct: 49 KGERVAIAASGGKDSTVLAHILSEL-NTRHDYGLDLFLLSIDEGISGYRDDSLETVKRNE 107 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I V+S+K + R + A + A + T H Sbjct: 108 VQYGIPLKVLSYKELYGWTMDEIVKEIGRKNNCTFCGVFRRQALDRGAALMKADKMATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185 DD ET+ + R + LS + + L +PF ++I + + Sbjct: 168 NADDMAETILLNLLRGDIAR---LSRCTAIMTGEEGALPRCKPFKYTYEKEIVMYAYFKK 224 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 LDYFSTECIYSPNAYRGYARDFIKDLE 251 >gi|320592099|gb|EFX04538.1| pp-loop ATPase superfamily [Grosmannia clavigera kw1407] Length = 377 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 17/213 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R + + SGG DS L L ++ ++R + +SVD ++ D + Sbjct: 15 ARLFYPGEKVAIGASGGKDSTVLASVLKTL-NERHKYGLDLVLLSVDEGIKGYRDDSLET 73 Query: 73 VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 V + + +V + + G R + AK + Sbjct: 74 VKRNAEQYEMPLKIVGYGELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKLLGIRH 133 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179 ++T H DD ETV M R + LS + + + R P ++I Sbjct: 134 VVTGHNADDVAETVLMNLLRGDLPR---LSRSTSIVTGGDHSEVKRSKPLKYAYEKEIVL 190 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R +++++ Sbjct: 191 YAHHKKLDYFSTECIYSPEAFRGSARSLIKNLE 223 >gi|260655018|ref|ZP_05860506.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1] gi|260630333|gb|EEX48527.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1] Length = 281 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 24/247 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L++P I V +SGG DS LL AL + S K A++VD + R + Sbjct: 30 DLIHPGDRIAVGLSGGKDSSLLLYALA-CMKRWSPVKFTLQALTVDM---TDGNWDTRPM 85 Query: 74 SDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + +C L + + VV++ + + + R ++ A+ + + H Sbjct: 86 AALCDMLDVPYQVVTFPVVSAIEGRNERSPCSFCANIRRGILDGTARQLGCNSVALGHHL 145 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS- 187 DD +ETV M R G + + +W+ RP + +R + ++ Sbjct: 146 DDTVETVLMNLFRG----GRFRAYLPRLYQDRSQVWVIRPLVYLTERQVRLENERLGLTR 201 Query: 188 -WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 ER R + VR ++ + F L+ V +A+ L L H+ Sbjct: 202 FHLSYTCPFSSDTERARTKELVRKLE--------ETFPSLKSNVQHALETLTEDDLWRHV 253 Query: 247 RSIIAIS 253 + Sbjct: 254 CQLRRDD 260 >gi|154312244|ref|XP_001555450.1| hypothetical protein BC1G_06155 [Botryotinia fuckeliana B05.10] gi|150850118|gb|EDN25311.1| hypothetical protein BC1G_06155 [Botryotinia fuckeliana B05.10] Length = 430 Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL P I + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 46 SLFSPGDKIAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + +A +V + + G R + AK + + Sbjct: 105 KRNAVQYDMALKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGINHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ET+ M R + L+ + D + + R P ++I + Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR---LARSTSIVTGDESSEVRRSKPLKYAYEKEIVLY 221 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 222 AHHKKLDYFTTECLYSPEAFRGSARSLIKNLE 253 >gi|310831050|ref|YP_003969693.1| putative 3'-5' exonuclease/tRNA(Ile) lysidine synthetase [Cafeteria roenbergensis virus BV-PW1] gi|309386234|gb|ADO67094.1| putative 3'-5' exonuclease/tRNA(Ile) lysidine synthetase [Cafeteria roenbergensis virus BV-PW1] Length = 385 Score = 109 bits (272), Expect = 9e-22, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 24/246 (9%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 +V++SGG DSM LL L +++ + S+++ R+ + DE+ ++ S RI Sbjct: 77 IVSLSGGVDSMVLLALLLNIIPAN-----RIITASINYNQRDESHDEMEFLHKYVSLYRI 131 Query: 83 AHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINAT----LIMTAHTFDDQL 132 + + +TG +++ RY L ++ +I+ H +D + Sbjct: 132 KKYSTTINIGRRRTGDIKRKFYEETSQQIRYDLYNKIINENRLDPQNTIILLGHHKNDLI 191 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E ++ K L M + + L RP L ++ I + + NI + +D Sbjct: 192 ENIFNNFM--SGRKLTDLEVMKE-LSSKHGLIYGRPLLDFQKSAIYNLAYKHNIPFFKDT 248 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + + R +R + + M ++ N M+ ++ I I Sbjct: 249 TPKWSK--RGLMRNKLFPLLFEIYPNFMNSLKNQGENSNELNKMVQDTWIN----DFIFI 302 Query: 253 SQDILN 258 +++I Sbjct: 303 TEEIPE 308 >gi|332669076|ref|YP_004452084.1| tRNA(Ile)-lysidine synthetase [Cellulomonas fimi ATCC 484] gi|332338114|gb|AEE44697.1| tRNA(Ile)-lysidine synthetase [Cellulomonas fimi ATCC 484] Length = 397 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 23/228 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK--------IKFSAISV 58 +V V L A +LVA SGG+ + + G+ ++ A+ V Sbjct: 13 AAVTRSVDGLPDGALVLVACSGGA-----DSLALAAATAFVAGRSVRRAGRMLRAGAVVV 67 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 DH L+ + + + C L + VV+ + G AAAR ARYA + A + Sbjct: 68 DHGLQAGSAEVAERAAATCRDLGLDPVVVARADVGGTGGPEAAARTARYAALDRAATRLG 127 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A ++ HT DDQ ETV + R + IL L + R D Sbjct: 128 AAAVLLGHTRDDQAETVLLGLARGSGALSLAGMPAVRGILRRPLLGLRR-------SDTL 180 Query: 179 SFLLQRNISWCEDPSN---TDDRFERVRVRRFVRDIDLHALYLKMKKF 223 + DP+N DD R RVR V + L + Sbjct: 181 GACAALGLDPWHDPTNDGTDDDAPLRSRVRGRVLPVLERELGPGVADA 228 >gi|282858096|ref|ZP_06267291.1| PP-loop domain protein [Pyramidobacter piscolens W5455] gi|282584018|gb|EFB89391.1| PP-loop domain protein [Pyramidobacter piscolens W5455] Length = 275 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 21/223 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V VSGG DS+ LL L + S K A SVD + + ++C Sbjct: 35 PGDRIAVGVSGGKDSLLLLHILKFI-KTYSPVKYDLQAFSVDM---TNGAWDPAPLQNLC 90 Query: 78 SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + V+ + + K + + R +++ A+ + H DD + Sbjct: 91 DALEVPLHVIPYAIEHILDVKREESPCSLCANLRRGILNAAAQKAGCNKLALGHNLDDVV 150 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET M R+ G S +W+ RP + IR+ L + ++ + Sbjct: 151 ETGLMNLLRN----GRFRSFQPKLWHDRAKMWLIRPMIYLSEFQIRNELNRLGVATFQHC 206 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 ER R + + ++ +F DL+ + +A+ Sbjct: 207 CKYGADTERSRTKSLIAELK--------PRFPDLKQSILHALE 241 >gi|221481085|gb|EEE19493.1| cancer-associated gene protein, putative [Toxoplasma gondii GT1] Length = 575 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 18/241 (7%) Query: 7 ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + V F+R + V VSGG DS LL LH++ + R + ++VD ++ Sbjct: 98 DDVSAFIRRFSLFQRGQKVAVCVSGGKDSAVLLHVLHTL-NARENLGLSLHLLAVDEGIK 156 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSW--------------KNSKPQTGLMAAAREARYAL 109 + V + VVS+ + + G R Sbjct: 157 GYRDHALAAVRRNSEVYNLPLHVVSYASLYHGWTMDRIAQQALLGKDGDCTFCGIFRRQA 216 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 A+ I A ++ T H DD ET M R ++ ++ +P Sbjct: 217 FERGAQDIGADVLCTGHNADDGAETFLMNILRGDMQRLPVSGAPLTGSREGPSVMRVKPL 276 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 L + ++ + + + R VR F+ + + ++ K Sbjct: 277 LASYQREVVLYAHFNRLDYFATECTYSGAAYRGLVRNFLSSLQDNQHQQRVLDLLHAARK 336 Query: 230 V 230 + Sbjct: 337 L 337 >gi|187777244|ref|ZP_02993717.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC 15579] gi|187774172|gb|EDU37974.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC 15579] Length = 240 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + Sbjct: 18 IQNGDKIAVGLSGGKDSIALLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLES 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDVRKEKNPCSLCANLRRGALNNYSKKLGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L ++ I RP + I+S + + N+ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPRTYLNKADITIIRPMIYIDELAIKSMVKRYNLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|222823247|ref|YP_002574820.1| ATPase (PP-loop superfamily) [Campylobacter lari RM2100] gi|222538468|gb|ACM63569.1| conserved hypothetical protein, putative ATPase (PP-loop superfamily) [Campylobacter lari RM2100] Length = 253 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 31/245 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+ +SGG DS+ L L + + F K + A++ L ++ + + C Sbjct: 26 DKVLLGLSGGKDSLALAHLLKRMQAHAPF-KFQLKAVT----LSYGMGEDYTKLHNHCKE 80 Query: 80 LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I H V+ S + + + R + +A + AH DD + Sbjct: 81 HGINHEVIDSNIYEISGDTIRKNSSFCSYFSRMRRGALYTYALENGFNKLAIAHHLDDAV 140 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 E+ +M + + L + + + RP + R +R + + + Sbjct: 141 ESFFMNFIYNGS-----LRSLAPKYKSKRGVEVIRPLIFVRERQLRENAINNELEVIGNE 195 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 F + L +K ++ ++ + PK T + I Sbjct: 196 --------------FCPGMKLSEKNVKFPHAREEAKQLLANLEKENPKLFTSLKTAFENI 241 Query: 253 SQDIL 257 D Sbjct: 242 HMDSF 246 >gi|170755404|ref|YP_001779793.1| hypothetical protein CLD_0620 [Clostridium botulinum B1 str. Okra] gi|169120616|gb|ACA44452.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 240 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSVVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I RP + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|153940664|ref|YP_001389528.1| hypothetical protein CLI_0220 [Clostridium botulinum F str. Langeland] gi|152936560|gb|ABS42058.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295317628|gb|ADF98005.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 240 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSVVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I RP + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|116202123|ref|XP_001226873.1| hypothetical protein CHGG_08946 [Chaetomium globosum CBS 148.51] gi|88177464|gb|EAQ84932.1| hypothetical protein CHGG_08946 [Chaetomium globosum CBS 148.51] Length = 402 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 QLFQPGEKVAIGASGGKDSTVLASVLKTL-NERHEYGLDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VV + + G R + AK + + Sbjct: 105 KRNAVQYDMPLTVVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + LS + D + R P ++I + Sbjct: 165 VTGHNADDVAETVLMNLLRGDLAR---LSRSTSIVTGDDRSEVKRSKPLKYSYEKEIVLY 221 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++ ++ Sbjct: 222 AHHKKLDYFSTECIYSPEAFRGSARSLIKQLE 253 >gi|255325834|ref|ZP_05366926.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum SK141] gi|255297046|gb|EET76371.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum SK141] Length = 295 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 17/200 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 +R+ + V +SGG+DS+ L+ AL + + A+ VDH L++ ++ + Sbjct: 1 MRAAGLDHAVAVGLSGGADSLALMAALVA-------EGHEVLALCVDHGLQDGSRAQAER 53 Query: 73 VSDVCSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ L V+S + + AAAR ARY ++ + AHT DD Sbjct: 54 AAEQARTLGARAQVLSVETGAVAGAESMEAAARAARYRALAAACADEGLE-VAVAHTADD 112 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 Q ET+ + + R ++GM + + + RP L RR D + +S Sbjct: 113 QAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGACAELGLSAWR 165 Query: 191 DPSNTDDRFERVRVRRFVRD 210 DP N D F RV +RR V Sbjct: 166 DPQNEDTNFRRVALRREVIP 185 >gi|315639278|ref|ZP_07894440.1| PP-loop family protein [Campylobacter upsaliensis JV21] gi|315480604|gb|EFU71246.1| PP-loop family protein [Campylobacter upsaliensis JV21] Length = 249 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 17/195 (8%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + + + + +L+ +SGG DS+ L L + + F K + A + Sbjct: 8 LIRQVAQANAKFKLIEDNDRVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT---- 62 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114 L ++ + C I HSV+ S + + + R + +A Sbjct: 63 LSYGMGEDYSKLHAHCEEHGIKHSVIESNIYEISGDTIRENSSFCSYFSRMRRGALYTYA 122 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + AH DD E+ +M + A L + + I RP + R Sbjct: 123 LEKGFNKLAIAHHLDDAAESFFMNFIHNGA-----LRTLAPIYKSKRGITIIRPLIFVRE 177 Query: 175 EDIRSFLLQRNISWC 189 +R + Sbjct: 178 RQLRDNATINELEVI 192 >gi|255940806|ref|XP_002561172.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585795|emb|CAP93523.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 341 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L +P + + SGG DS L L ++ ++R + +S+D +R D + V Sbjct: 46 NLFFPGERVAIGASGGKDSTVLAAVLKTL-NERYDYGLDLCLLSIDEGIRGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++ + G R + A + + Sbjct: 105 KRNAVQYDMPLDILGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIRHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + + D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSDASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R + + R R ++D++ Sbjct: 223 HHRQLDYFTTECIYSPEAFRGSARTLIKDLE 253 >gi|261367670|ref|ZP_05980553.1| PP-loop family protein [Subdoligranulum variabile DSM 15176] gi|282570463|gb|EFB75998.1| PP-loop family protein [Subdoligranulum variabile DSM 15176] Length = 252 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 23/232 (9%) Query: 9 VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 VR V+ + ++V VSGG DS+ L IAL + + + A+++D C Sbjct: 11 VRKAVQDYEMIAPGDRVMVGVSGGKDSVVLTIALGRLRAYLGVP-FEVQAVTLDPCFGGV 69 Query: 64 --ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAK 115 + + + ++ I + V + + ++ A + R + A+ Sbjct: 70 ETDYSPLSELFAAE-----NIPYEVRRTDIGPVVFDYRKESNPCALCAKLRRGTLHTAAQ 124 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H DD +ET YM R +G T L +L + RP L Sbjct: 125 QLGCNKVALGHHLDDAVETFYMNLWR----EGRIGCFSPVTYLSRRDLTMIRPLLLATES 180 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ S + + + + D R ++FVR+ + K L+ Sbjct: 181 EVTSAVKRAGLPVIKSRCPADGVTTREETKQFVREFSRKDPAFRQKTLHALQ 232 >gi|168019804|ref|XP_001762434.1| predicted protein [Physcomitrella patens subsp. patens] gi|162686512|gb|EDQ72901.1| predicted protein [Physcomitrella patens subsp. patens] Length = 348 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 16/207 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L ++L+ R + +S+D + D + V Sbjct: 49 RGDRVAVAASGGKDSTVLAHVL-TLLNKRHDYGLDLFLLSIDEGIAGYRDDSLETVKRNE 107 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ I VVS+K R + A + A + T H Sbjct: 108 TQYGIPLEVVSYKTLYNWTMDEIVKEIGLKNNCTFCGVFRRQALDRGAAKMKAVKMATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185 DD ET+ + R + L+ I + L +PF ++I + + Sbjct: 168 NADDVAETILLNIVRGDIAR---LARCTSIITGEEGALPRCKPFKYTYEKEIVMYAYFKK 224 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 LDYFSTECTYSPNAYRGFAREFIKDLE 251 >gi|257459068|ref|ZP_05624187.1| PP-loop family protein [Campylobacter gracilis RM3268] gi|257443453|gb|EEV18577.1| PP-loop family protein [Campylobacter gracilis RM3268] Length = 249 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 84/260 (32%), Gaps = 40/260 (15%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + IL+A+SGG DSM L L S S +F A++V + + +++R + Sbjct: 20 KMFERGDKILLALSGGKDSMSLAHVLKHFQSV-SPLDWEFRAVTVTYGI----GEDLREI 74 Query: 74 SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 S I + ++ K + T + R I +A I AH Sbjct: 75 SAHFKEHEIPYEIIDTKIFEFGKEKIRANTTFCSFCSRMRRGYIYSYALEHGFNKIAIAH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E+ +M + A L + + + L I RPF+ R I + + Sbjct: 135 HLDDAAESFFMNFTFNGA-----LRTLAPRYVAENGLVIIRPFILARERQIAACARDNKL 189 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 I +++ A L+ +Y H Sbjct: 190 P-----------------------IMREEEVCPARQYGGKEPTARAATKELLAQYEKTHP 226 Query: 247 RSIIAISQDILNIDSTLLFY 266 R I++ NI F Sbjct: 227 RFFISLQAAFANIHEETFFE 246 >gi|154151660|ref|YP_001405278.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|154000212|gb|ABS56635.1| PP-loop domain protein [Methanoregula boonei 6A8] Length = 315 Score = 108 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 24/222 (10%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L + L++P I V +SGG DS LL+ L +L ++K AI+VD Sbjct: 40 LEARAAATIREGDLIHPGDRIAVGLSGGKDSTALLVILSRLLP--GLPEVKIVAITVDEG 97 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALIS 111 + D ++ + RL + H +VS+++ R + Sbjct: 98 IAGYRSDTIKSAEALTRRLGVEHRMVSFRDLIGSDLDTLLLGRGKQACTICGILRKKALM 157 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A+ AT+I T H DD+ ++V M + R + + +G + + L +P Sbjct: 158 DAARDSGATVIATGHNLDDEAQSVLMNALRGDLPRLVRDAGAGRSAPF---LPRIKPLAA 214 Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDI 211 ++I ++L +++ E P + R +R VR + Sbjct: 215 IAEKEIAAYLFVQDLFPVLPECP------YTRYALRADVRSL 250 >gi|295674393|ref|XP_002797742.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis Pb01] gi|226280392|gb|EEH35958.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis Pb01] Length = 404 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 100/297 (33%), Gaps = 25/297 (8%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++L YP + + SGG DS L L ++ +DR + + +S+D ++ D + Sbjct: 45 KALFYPGERVAIGASGGKDSTVLASVLKTL-NDRHNYGLHLTLLSIDEGIKGYRDDSLET 103 Query: 73 VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 V + + +V + G R + A + Sbjct: 104 VKRNAVQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + + R R ++D++ + V+ +A L+P Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKMRPSSILD-----IVRSGEDMARLVPPE 277 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298 ++ + I S L D+ S CG Q L R + + L + Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGLLNGRELADIEKDLSEDQ 328 >gi|290987162|ref|XP_002676292.1| hypothetical protein NAEGRDRAFT_36958 [Naegleria gruberi] gi|284089893|gb|EFC43548.1| hypothetical protein NAEGRDRAFT_36958 [Naegleria gruberi] Length = 368 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 19/214 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + +A SGG DS L + VL++R + +S+D ++ D + V Sbjct: 45 NLFKPGDKVAIAASGGKDSTALAHIMK-VLNERYNYGLDLYLLSIDEGIKGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + ++ ++S+K R + + + + Sbjct: 104 KRNREQYQVPLKILSYKELYGWSMDEIVQQIGLKNNCTFCGVFRRQALDRGCEQLKVDKM 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCRREDIRS 179 +T H DD ETV M R + L D I +D + PF +++I Sbjct: 164 VTGHNADDIAETVLMNILRGDIGR---LERCVDIITHDEGGFSIPRAKPFKYTYQKEIVL 220 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213 + + + + + R R ++D++ Sbjct: 221 YAYFKKLDYFSTECSYSPNAYRGHARELIKDLEQ 254 >gi|66804305|ref|XP_635931.1| hypothetical protein DDB_G0290035 [Dictyostelium discoideum AX4] gi|60464272|gb|EAL62423.1| hypothetical protein DDB_G0290035 [Dictyostelium discoideum AX4] Length = 1165 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 24/206 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77 +LV VSGG DS+ L+ L + RS K +A +VD + D + + + Sbjct: 922 GDKVLVGVSGGKDSLTLIHTLLDLRR-RSKAKYTVAACTVD----PQSPDYDPSQLKNYF 976 Query: 78 SRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L + + VS + + + + A R ++ + + ++ Sbjct: 977 ASLGVPYFYVSQAIMESAKSCMLREGIENKASICAYCSRMRRGIMYDICRREGYNVLALG 1036 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E+ M GM + + + ++ I RP R R F Sbjct: 1037 QHLDDLSESFLM----SAFYNGMLSTMKVNYLNEQGDVRIIRPLANLRESQTRLFAKVMG 1092 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI 211 + N FE ++R+ ++ + Sbjct: 1093 LPVI--SENCPACFEAPKIRQSMKKL 1116 >gi|169771105|ref|XP_001820022.1| cytoplasmic tRNA 2-thiolation protein 1 [Aspergillus oryzae RIB40] gi|238486380|ref|XP_002374428.1| PP-loop ATPase superfamily protein, putative [Aspergillus flavus NRRL3357] gi|83767881|dbj|BAE58020.1| unnamed protein product [Aspergillus oryzae] gi|220699307|gb|EED55646.1| PP-loop ATPase superfamily protein, putative [Aspergillus flavus NRRL3357] Length = 417 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL YP + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + G R + A + + Sbjct: 105 KRNAEQYEMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + D+ D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 223 HHKQLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|238020968|ref|ZP_04601394.1| hypothetical protein GCWU000324_00865 [Kingella oralis ATCC 51147] gi|237867948|gb|EEP68954.1| hypothetical protein GCWU000324_00865 [Kingella oralis ATCC 51147] Length = 345 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%) Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + AH DDQ+ET ++ + R + L+ M + + + RP L R +I Sbjct: 27 CDAVALAHHQDDQIETFFLAALRGGGIR--ALAAMPPSREW-QGKTLLRPLLAYSRAEIE 83 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML- 237 ++ N++ D SN D R +R + + L Q + + A+L Sbjct: 84 AYATAHNLAHVNDSSNQDPGLLRNWLRHQMLPRLVFRLPHAAAHIQSTITTLQDEHALLN 143 Query: 238 ---IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVM 291 + +H + +L A + + P RS+ RV+ Sbjct: 144 EIIAEDWQRIHTPRNQFSRPAWQQLSPLRRRQMLHRFAHV--HNLGTPSKRSLADFARVL 201 Query: 292 LFLKSGKRGCVSIGRVVIDRR 312 + G+ ++ R+ Sbjct: 202 DQAAHSATWQLPHGKALLHRQ 222 >gi|157165487|ref|YP_001466356.1| PP-loop family protein [Campylobacter concisus 13826] gi|112800124|gb|EAT97468.1| PP-loop family protein [Campylobacter concisus 13826] Length = 252 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + IL+ +SGG DS+ L L + + K +F A++ L ++ Y+ Sbjct: 20 KMIEGGDKILLGLSGGKDSLALAHVLKHIQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74 Query: 74 SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C+ I H V+ S + + + + R + +A + AH Sbjct: 75 TKHCNEHGIEHEVIDSSIFEISKEKIRKNSSFCSFFSRMRRGYLYTYALNHGFNKLAIAH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E+ +M + A L + + + RPF+ R +R ++ + Sbjct: 135 HLDDAAESFFMNFTYNGA-----LRTLAPKYKAKNGIIVIRPFIFVRERQLRENAIKNEL 189 Query: 187 SWCEDP 192 D Sbjct: 190 RVVGDE 195 >gi|224538910|ref|ZP_03679449.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus DSM 14838] gi|224519488|gb|EEF88593.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus DSM 14838] Length = 251 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 42/245 (17%) Query: 10 RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DH 60 + F + LV IL+ +SGG DS+ L+ L + + A+ V + Sbjct: 16 KRFSKGLVEYGLIEDGDKILIGLSGGKDSLALVELLAK-RARVFKPRFSVVAVHVVMKN- 73 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTI 117 + + + Y+ + + + + ++ + R + AK Sbjct: 74 -IPYQSD--LAYLREYVESWNVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQ 130 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H DD LET+ M +G S ++ ++ I RP D+ Sbjct: 131 GCNKIALGHHMDDILETLLMNIT----FQGAFSSMPPRLVMKKFDMTIIRPMCLVHESDL 186 Query: 178 RSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 R S SN D + + +++ A Y + Sbjct: 187 LELAQIRGYRKQVKNCPYEAQSHR---SNMKD------ILHQLEEMNPEARYSLWGSMAN 237 Query: 226 LRVKV 230 ++ ++ Sbjct: 238 VQEEL 242 >gi|169335606|ref|ZP_02862799.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM 17244] gi|169258344|gb|EDS72310.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM 17244] Length = 234 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 14/220 (6%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 HI VAVSGG DSM LL AL + + S K K +AIS+D + E V CS L Sbjct: 23 HICVAVSGGKDSMILLKALRTFMY-FSPVKFKLTAISIDVGF-DNMDFEKLRV--FCSDL 78 Query: 81 RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 I +V + + + + + + A ++E A +I + I H DD +E+ Sbjct: 79 DIPLKIVKTDIAKIVFDERKEKNPCSLCSKMKRAALNETALSIGSNKIAYGHHRDDFIES 138 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + +G + T L ++ RP L + +DI + NI + Sbjct: 139 FLLSLF----YEGRIHTFKPVTYLDRTGVYSIRPLLYAKEKDIIHAVKTENIPVIKSGCP 194 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 D +R ++ ++ + + + F ++ +++ Sbjct: 195 ADGFTKREEMKELMKYLKKQIPMVDERMFTAIKNNLDDIH 234 >gi|255321990|ref|ZP_05363140.1| PP-loop family protein [Campylobacter showae RM3277] gi|255301094|gb|EET80361.1| PP-loop family protein [Campylobacter showae RM3277] Length = 255 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 17/186 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + IL+ +SGG DS+ L L + + K +F A++ L ++ Y+ Sbjct: 20 RMVRGGDKILLGLSGGKDSLALAHVLKHMQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74 Query: 74 SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C+ I H V+ S + + + R + +A + AH Sbjct: 75 TRHCAEHGIEHDVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +E+ +M + A L + + + + RPF+ R +R ++ + Sbjct: 135 HLDDAVESFFMNFTYNGA-----LRTLAPKYVAANGIEVIRPFIFVRERQLRENAVRNGL 189 Query: 187 SWCEDP 192 + D Sbjct: 190 TVIGDE 195 >gi|154173805|ref|YP_001408798.1| PP-loop family protein [Campylobacter curvus 525.92] gi|112803748|gb|EAU01092.1| PP-loop family protein [Campylobacter curvus 525.92] Length = 256 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 89/271 (32%), Gaps = 34/271 (12%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 LS + + + IL+ +SGG DS+ L L + K +F A++ L Sbjct: 9 LSTVGKTNAQYKMVQGGDKILLGLSGGKDSLALAHVLKHMQRVTPE-KFEFKAVT----L 63 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAK 115 ++ Y++ C+ I H V+ S + + + R + +A Sbjct: 64 SYGMGEDYAYLTRHCNEHGIEHEVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYAL 123 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AH DD E+ +M + A L + + + RPF+ R Sbjct: 124 NGGFNKLAIAHHLDDAAESFFMNFTYNGA-----LRTLAPKYKAKNGIEVIRPFIFVRER 178 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +R L+ + D + RF+ +KM + ++ + Sbjct: 179 QLRENALRNELRVIGDEACPAMRFD-----------------VKMPHARYETKQLLAQLE 221 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFY 266 PK T + I D S F Sbjct: 222 KNNPKLFTSLKAAFHNIHTDTFFGSSEAKFS 252 >gi|19112856|ref|NP_596064.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe 972h-] gi|74582842|sp|O94282|CTU1_SCHPO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|3850068|emb|CAA21879.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe] Length = 335 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 87/257 (33%), Gaps = 25/257 (9%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 + FVR + + SGG DS L + +L++R ++ ISVD +R D Sbjct: 46 KLFVR----GERVGIGASGGKDSTVLAYVMK-LLNERYDYGLELYLISVDEGIRGYRDDS 100 Query: 70 VRYVSDVCSRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTI 117 + V + + +VS R + A ++ Sbjct: 101 LDTVKRNQQQYGLPMKIVSYADLYDGWTMDNVVARIGTKNNCTYCGVFRRQALDRAALSL 160 Query: 118 NATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + ++T H DD ET+ M R + ++ D+ + +PF Sbjct: 161 DIHHLVTGHNADDIAETILMNLLRGDVARLPRSTEITTQSDSSPTKRS----KPFKYSYE 216 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNA 233 ++I + + + + R R ++ + ++ + + +++ ++ Sbjct: 217 KEIVLYAHYKKLDYFSTECTYSPEAFRGTARAMIKQLENIRPSSILDIIYSGESMQLASS 276 Query: 234 VAMLIPKYLTVHMRSII 250 V +P+ T I Sbjct: 277 VQEQLPQQTTCERCGFI 293 >gi|223038750|ref|ZP_03609043.1| PP-loop family protein [Campylobacter rectus RM3267] gi|222880152|gb|EEF15240.1| PP-loop family protein [Campylobacter rectus RM3267] Length = 255 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 17/186 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + IL+ +SGG DS+ L L + + K +F A++ L ++ Y+ Sbjct: 20 RMVRGGDKILLGLSGGKDSLALAHVLKHMQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74 Query: 74 SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C+ I H V+ S + + + R + +A + AH Sbjct: 75 TRHCAEHGIEHDVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +E+ +M + A L + + + + RPF+ R +R ++ + Sbjct: 135 HLDDAVESFFMNFTYNGA-----LRTLAPKYVAANGIEVIRPFIFVRERQLRENAVRNGL 189 Query: 187 SWCEDP 192 + D Sbjct: 190 TVIGDE 195 >gi|288932186|ref|YP_003436246.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] gi|288894434|gb|ADC65971.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] Length = 302 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 15/205 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + I +A+SGG DS+ L L + R ++F AI++D + V Sbjct: 42 KMIESGDKIALAMSGGKDSVTLAHTLIELYGKRR--DLEFFAITIDEGIEGYRPPTVEIA 99 Query: 74 SDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123 VC L I H VVS++ + R L++ A+ + AT + Sbjct: 100 KKVCRDLGIEHVVVSFREEIGLDLDEMVERGSRNACTYCGVFRKYLLNRTARELGATKLA 159 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ +T+ + E+ L+ + + ++ +P +++ + + Sbjct: 160 TGHNLDDETQTILLNFLNADIER---LARLIPQRVQKGLVYRIKPLREIYEKEVVVYAII 216 Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208 N+ + R VR F+ Sbjct: 217 NNLPVSLEECPYSRFPARALVRDFI 241 >gi|305432659|ref|ZP_07401820.1| PP-loop family protein [Campylobacter coli JV20] gi|304444370|gb|EFM37022.1| PP-loop family protein [Campylobacter coli JV20] Length = 253 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + + F K + A + L ++ + C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT----LSYGMGEDYSGLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVIDSNIYEVSGDTIRQNSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192 >gi|71031446|ref|XP_765365.1| hypothetical protein [Theileria parva strain Muguga] gi|68352321|gb|EAN33082.1| hypothetical protein, conserved [Theileria parva] Length = 376 Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 20/215 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V VSGG DS L L + + VD ++ D ++ V + Sbjct: 48 SGDRVCVGVSGGKDSSVLAHVLSKIKETYGL-DWNLYLLGVDEGIKGYRDDSLKVVKSMH 106 Query: 78 SRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +I ++S+K + G R ++ A+ A ++ T H Sbjct: 107 DKYKIELKILSFKERFGFSMDQVVKLIGKKGNCTVCGSFRRQMLEIGARIFEANVLCTGH 166 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NLWISRPFLRCRREDIR 178 DD ETV + R K S D + +P ++I Sbjct: 167 NADDMAETVLLNLFRGDLLKLTSNSNSPSDTTVDNTSESVNKVRIRRVKPLKYSFEKEIV 226 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213 + ++ + R +R F+++++L Sbjct: 227 LYARYLSLDYFSTECIYSPEAYRGHMRSFIKNLEL 261 >gi|310800566|gb|EFQ35459.1| PP-loop family protein [Glomerella graminicola M1.001] Length = 396 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L + ++R + +S+D ++ D + V Sbjct: 46 ALFSPGEKVAIGASGGKDSTVLASVLKDL-NERYHYGLDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 ++ + +V+ + + G R + AK + + Sbjct: 105 KRNATQYEMPLTVIGYDELYGWTMDQVVQTIGKKGNCTYCGVFRRQALDRGAKMLGIKHL 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ET+ M R + +G S T ++ S+P ++I + Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR-LGRSTSIVTGDDTCDVKRSKPLKYSYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 224 HKKLDYFSTECIYSPEAFRGTARTLIKNLE 253 >gi|258515579|ref|YP_003191801.1| PP-loop domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779284|gb|ACV63178.1| PP-loop domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 247 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 21/222 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 FLS I+ SL+ I+ V +SGG DS+ LL +L ++ + KF AI +D Sbjct: 8 FLSEIKKA-IIRHSLIVDGDIIGVGISGGKDSIALLYSLCDIIRSAPV-RFKFIAILIDL 65 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHA 114 ++ + D C + I + +K + + + R + A Sbjct: 66 GW----LSDLSPIVDFCQQKNIQLHIEPSDIAKIVFEIREEKQPCSLCAKMRRGALHNTA 121 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H DD +ET ++ G + + L ++ + RP + Sbjct: 122 KMLGCNKVALGHHLDDVIETFFLNLI----YTGQMKTFLPAIYLDRSDITLIRPMIYVTE 177 Query: 175 EDIRSFLLQRNISWCEDPSN--TDDRFERVRVRRFVRDIDLH 214 +D+ + + + N+ SN D + +R ++ V + H Sbjct: 178 DDVVNLVGRENLPVV--SSNCPVDGKTKREEIKSTVALLASH 217 >gi|302770933|ref|XP_002968885.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii] gi|300163390|gb|EFJ30001.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii] Length = 349 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 16/207 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A SGG DS L L + + R + +S+D + D + V Sbjct: 49 KGERVAMAASGGKDSTVLAHILSEL-NTRHDYGLDLFLLSIDEGISGYRDDSLETVKRNE 107 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I V+S+K + R + A + A + T H Sbjct: 108 VQYGIPLKVLSYKELYGWTMDEIVKEIGRKNNCTFCGVFRRQALDRGAALMKADKMATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185 DD ET+ + R + LS + + L +PF ++I + + Sbjct: 168 NADDMAETILLNLLRGDIAR---LSRCTAIMTGEEGALPRCKPFKYTYEKEIVMYAYFKK 224 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 LDYFSTECIYSPNAYRGYARDFIKDLE 251 >gi|296242202|ref|YP_003649689.1| PP-loop domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094786|gb|ADG90737.1| PP-loop domain protein [Thermosphaera aggregans DSM 11486] Length = 339 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 35/250 (14%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 VR +R L HI+V VSGG DSM LL L + R + +A+ VD ++ Sbjct: 34 RVRRTIRKHRMLGEKEHIVVGVSGGKDSMSLLHILRKL--SRKNKNWRLTALLVDEGIKG 91 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAARE-------------ARYAL 109 ++ + + R + + +VS+K+ T + RE R + Sbjct: 92 YRENTIPALKIYAERNMVEYKIVSFKDYLGLTLDEIVSTGREKGLPYLPCSYCGVFRRYV 151 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 +++ A+ + T++ TAH DD ++T M + +K L + D ++ + +PF Sbjct: 152 LNKAARELGGTVLATAHNLDDIVQTYLMNVINNSWDKIARLKPVADKGGHEGFVPRIKPF 211 Query: 170 LRCRREDIRSFLLQRNI--------SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 ++ + L + + E + RF +R+ + D++ K Sbjct: 212 YEVLEKESAIYALVNGLVEPGYHQCPYAE----YNIRFT---IRKILNDLEEKYPGTKYG 264 Query: 222 KFQDLRVKVN 231 + L ++ Sbjct: 265 LLRSLEKIIS 274 >gi|224370118|ref|YP_002604282.1| putative ATPase [Desulfobacterium autotrophicum HRM2] gi|223692835|gb|ACN16118.1| putative ATPase [Desulfobacterium autotrophicum HRM2] Length = 244 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 17/229 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76 I+V VSGG DS+ LL L + ++ + VD + ++ YV Sbjct: 25 PGDRIVVGVSGGMDSLTLLRMLVDL-KKKAPLDFHLVPVYVDPGFEPSFAGDLKAYVE-- 81 Query: 77 CSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L V + + Q R + E A+ I H DD Sbjct: 82 -FHLG-PLMVERTDHGIVAHSDENQENPCFLCSRLRRKRLFEIARDQGCNTIALGHNKDD 139 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ G + +D L I RP + I S + Sbjct: 140 LIETLFINMF----YSGAIGTMKPCQSFFDGTLEIIRPLAYVEKRRIVSLSESLGFPAFK 195 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLI 238 +P +D +R VR + + ++K F+ + RVK++ + + Sbjct: 196 NPCPSDGFTKRTAVRHMLEGLYAENPHIKGNIFKAMGRVKMDYLLKQTL 244 >gi|149194409|ref|ZP_01871506.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2] gi|149135584|gb|EDM24063.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2] Length = 262 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 30/229 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +L+A+SGG DS LL L + F K +AI++D + + C Sbjct: 35 DKVLIALSGGKDSFVLLHVLKRMQLIAPF-KFDLAAITID----AGTGIDYSPLKKWCDS 89 Query: 80 LRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I + + + +P + R + AK + + H FDD + Sbjct: 90 FGIEYILYKTPILEIMNEKKRPGSSPCGFCARMRRGALYSKAKELGFNKLALGHHFDDAV 149 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC--- 189 ET +M GM + M + + + RP ++ R + I + + N Sbjct: 150 ETFFMSMF----YNGM-MKSMPPKYKANSGIEVIRPMIKVREKWIEYMVSKNNFPIINGE 204 Query: 190 ------EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 +D + R +V+ +++ ++ K FQ + N Sbjct: 205 ESCLALKDSEGVKIPYAREKVKNWLKKMEEEEP----KFFQRMESAFEN 249 >gi|124027476|ref|YP_001012796.1| ATPase [Hyperthermus butylicus DSM 5456] gi|123978170|gb|ABM80451.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus DSM 5456] Length = 331 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 32/247 (12%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 VR +R I+VAVSGG DSM LL L + + + +A+ VD +R Sbjct: 21 KVRRTLRRYKLFGPEEKIVVAVSGGKDSMSLLHYLLRL--SKRVPGWRVAALLVDEGIRG 78 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAAREARYAL 109 + + + + + +++ + GL R L Sbjct: 79 YREYTIERFLRFVEEHGVEYRIARFRDEFGYTLDEIVKIGKERGLPYLPCTYCGVFRRYL 138 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 +++ A+ + AT++ TAH DD ++T M + +K L + + + +PF Sbjct: 139 MNKTAREMGATVVATAHNLDDLVQTYLMNVFNNDWDKIARLGPISGPGTHPRFVRKVKPF 198 Query: 170 LRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERV----RVRRFVRDIDLHALYLKMKKF 223 ++ + + + + E P + R+ +RR + +++ + +K Sbjct: 199 YEVLEKETTIYAVINGLYTGFEECP------YARLSVRWYIRRMLNELEERSPGVKYSLL 252 Query: 224 QDLRVKV 230 + L+ + Sbjct: 253 RSLQTAI 259 >gi|312136595|ref|YP_004003932.1| pp-loop domain protein [Methanothermus fervidus DSM 2088] gi|311224314|gb|ADP77170.1| PP-loop domain protein [Methanothermus fervidus DSM 2088] Length = 306 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 17/181 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L VSGG DS+ +L L+ + G I+ ++VD ++ + + Sbjct: 47 KGDRVLAGVSGGKDSVAMLDILNIL---HERGIIELEVLTVDEGIKNYREKTLEIAKYHT 103 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 RL I H +V +K+ S + G R + ++ K + A I AH Sbjct: 104 KRLGIPHHIVKFKDCFGITLDEIVSSNVERGPCTYCGVFRRWIFNKIGKKLEADKIAIAH 163 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD+ E + M + + L + ++ + L +P +I + + + Sbjct: 164 NLDDETEAILMNYLEGNIKNLIRLGPISESKDF---LTKIKPLREIPENEIILYTKFKGL 220 Query: 187 S 187 Sbjct: 221 K 221 >gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255] Length = 687 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 19/144 (13%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L P +AVSGG+DSM L + S G I +A VDH R + E + V+ Sbjct: 45 LQLPQRFGIAVSGGADSMALAYLCKQLERSSDVAGAISVTAFVVDHRARPESTIEAQKVA 104 Query: 75 DVCSRLRIAHSVVSWKNSK----------PQTG--------LMAAAREARYALISEHAKT 116 + I ++S S P++G AR R+ + Sbjct: 105 GWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALGIACHE 164 Query: 117 INATLIMTAHTFDDQLETVYMRSQ 140 ++ H DD +ET R Sbjct: 165 FKLETLLLGHHQDDNIETTIWRLS 188 Score = 55.7 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 18/151 (11%) Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKM 220 ++I RP L + + + N+ + DP+N D R +R L Sbjct: 271 GIFICRPLLSFTKASLLETCHKNNVPYVSDPTNFDPTLTPRNAIRSLRTSNSLPRALGSQ 330 Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280 +R + + + +++ IL+ D +++ Sbjct: 331 SILSLIRSSKD------LLQRSNELSNYLLSSQCRILDFDPKAGSAVIQFLD-------- 376 Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311 P SM+ + L + + +V+ R Sbjct: 377 -PSPASMDPQLATLSESRTRQIQT--IVLRR 404 >gi|301162199|emb|CBW21744.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 249 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 9/170 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV +SGG DS+ L+ L S + A+ V D Y+ + Sbjct: 31 GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88 Query: 79 RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + V ++ + R + AK I H DD LET+ Sbjct: 89 KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 M +G + ++ ++ I RP D+ F R Sbjct: 149 LMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLEFAQIRG 194 >gi|156064273|ref|XP_001598058.1| hypothetical protein SS1G_00144 [Sclerotinia sclerotiorum 1980] gi|154691006|gb|EDN90744.1| hypothetical protein SS1G_00144 [Sclerotinia sclerotiorum 1980 UF-70] Length = 430 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL P I + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 46 SLFSPGDRIAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + AK + + Sbjct: 105 KRNAIQYEMPLKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ET+ M R + L+ + D + + R P ++I + Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR---LARSTSIVTGDESSDVRRSKPLKYAYEKEIVLY 221 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 222 AHHKKLDYFSTECLYSPEAFRGSARSLIKNLE 253 >gi|148642613|ref|YP_001273126.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061] gi|261349566|ref|ZP_05974983.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] gi|148551630|gb|ABQ86758.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii ATCC 35061] gi|288861524|gb|EFC93822.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] Length = 305 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 15/191 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +LVA+SGG DS+ L L+S R I A++VD + ++ V Sbjct: 43 KLLDKGDKVLVALSGGKDSVTTLEILNSF---RKMNIIDICAVTVDEGIDNYRQEGVDIA 99 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 RL I H VVS K G + R +I++ A+ + AT I Sbjct: 100 IRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKI 159 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD+++ + M + L + + + I +P +I +++ Sbjct: 160 ATGHNLDDEVQAIMMNYLEGNTDNLTKLGAKSSSKAKEFTVKI-KPLREIPEREIGLYVV 218 Query: 183 QRNISWCEDPS 193 + + D Sbjct: 219 AKELEVHFDSC 229 >gi|57168713|ref|ZP_00367845.1| conserved hypothetical protein [Campylobacter coli RM2228] gi|57019994|gb|EAL56674.1| conserved hypothetical protein [Campylobacter coli RM2228] Length = 251 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L + + F K + A + L ++ + C Sbjct: 25 GDKVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT----LSYGMGEDYSGLHAHCE 79 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV VS + + + R + +A + AH DD Sbjct: 80 EHGIKHSVIDSNIYEVSGDTIRQNSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R Q + Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELQVI 192 >gi|307102713|gb|EFN50982.1| hypothetical protein CHLNCDRAFT_141632 [Chlorella variabilis] Length = 467 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 18/213 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R + VA SGG DS L + ++ + R + +S+D + D + Sbjct: 44 ARLFRPGERVAVAASGGKDSTVLAHMMTTL-NQRHGYGLDLFLLSIDEGISGYRDDSLDT 102 Query: 73 VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121 V ++ +I V S+K+ R + A + A Sbjct: 103 VKRNEAQYQIPLHVFSYKDLYGWTMDEIVREIGTRSNCTFCGVFRRQALDRGAALVGAHK 162 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRS 179 I T H DD ETV + R + G C I+ D +L +PF ++I Sbjct: 163 IATGHNADDVAETVLLNIIRGDVPR----LGRCANIITGEDSSLPRVKPFKYTYEKEIVM 218 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R FV+D++ Sbjct: 219 YAYFKRLDYFSTECIYAPYAARGFAREFVKDLE 251 >gi|284162492|ref|YP_003401115.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] gi|284012489|gb|ADB58442.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] Length = 308 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 19/200 (9%) Query: 2 FLSPIE-SVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F+ E V++ ++ I +A+SGG DS+ L LH LS R ++ AI+ Sbjct: 27 FIEYFERKVKYAIKKFNMIESGDRIAIALSGGKDSVTLTYVLHKFLSKRR--DVELFAIT 84 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARY 107 VD + V+ + S L I H +VS+K+ R Sbjct: 85 VDEGIEGYRPPTVKIARKITSELGIEHIIVSFKDYFGMTLDEMVKLGDKKPCTYCGVFRK 144 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 L+++ A+ + AT + T H DD+++T+ + + E+ L+ + + + + + Sbjct: 145 YLLNKTAREMGATKLATGHNLDDEVQTILLNFLQADIER---LARLIPQRVQEGLIMRIK 201 Query: 168 PFLRCRREDIRSFLLQRNIS 187 PF D+ + L N+ Sbjct: 202 PFREVYERDVVVYGLLHNLP 221 >gi|170758613|ref|YP_001785494.1| hypothetical protein CLK_3340 [Clostridium botulinum A3 str. Loch Maree] gi|169405602|gb|ACA54013.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 240 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I RP + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|168177499|ref|ZP_02612163.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|168182225|ref|ZP_02616889.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|226947389|ref|YP_002802480.1| hypothetical protein CLM_0209 [Clostridium botulinum A2 str. Kyoto] gi|237793484|ref|YP_002861036.1| hypothetical protein CLJ_B0204 [Clostridium botulinum Ba4 str. 657] gi|182671105|gb|EDT83079.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182674626|gb|EDT86587.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|226842841|gb|ACO85507.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] gi|229261836|gb|ACQ52869.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 240 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I RP + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|148378171|ref|YP_001252712.1| hypothetical protein CBO0165 [Clostridium botulinum A str. ATCC 3502] gi|153931125|ref|YP_001382571.1| hypothetical protein CLB_0202 [Clostridium botulinum A str. ATCC 19397] gi|153937579|ref|YP_001386124.1| hypothetical protein CLC_0213 [Clostridium botulinum A str. Hall] gi|148287655|emb|CAL81720.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927169|gb|ABS32669.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152933493|gb|ABS38992.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 240 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKKLGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I RP + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|222445889|ref|ZP_03608404.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii DSM 2375] gi|222435454|gb|EEE42619.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii DSM 2375] Length = 305 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 15/191 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +LVA+SGG DS+ L L+S R I A++VD + ++ V Sbjct: 43 KLLDKGDKVLVALSGGKDSVTTLEILNSF---RKMNVIDICAVTVDEGIDNYRQEGVDIA 99 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 RL I H VVS K G + R +I++ A+ + AT I Sbjct: 100 IRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKI 159 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD+++ + M + L + + + I +P +I +++ Sbjct: 160 ATGHNLDDEVQAIMMNYLEGNTDNLTKLGAKSSSKAKEFTVKI-KPLREIPEREIGLYVV 218 Query: 183 QRNISWCEDPS 193 + + D Sbjct: 219 AKELEVHFDSC 229 >gi|50292393|ref|XP_448629.1| hypothetical protein [Candida glabrata CBS 138] gi|74608911|sp|Q6FMB5|CTU1_CANGA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|49527941|emb|CAG61592.1| unnamed protein product [Candida glabrata] Length = 358 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 17/210 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + SGG DS L L +L+DR +K +S+D + D + V Sbjct: 64 FQRGEKVAIGASGGKDSTVLAHILK-LLNDRHDYGVKLVLLSIDEGIVGYRDDSLATVKR 122 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + ++ +VS+++ R + A ++ ++T Sbjct: 123 NQKQYQLPLEIVSFRDLYDWTMDEIVAIAGIRNSCTYCGVFRRQALDRGAAKLDINHVVT 182 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182 H DD ETV M R + L I I R PF C +++I + Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LERSTAIITQSAGSPIRRSKPFKYCYQKEIVLYAH 239 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 240 YKKLDYFSTECTYAPEAFRGTARELMKNLE 269 >gi|57505313|ref|ZP_00371242.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57016449|gb|EAL53234.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 252 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 17/185 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + + + + +L+ +SGG DS+ L L + + F K + A + Sbjct: 8 LIRQVAQANAKFKLIENNDKVLLGLSGGKDSLTLAHLLKRMQAHAPF-KFELEAAT---- 62 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114 L ++ + C I HSV+ S + + + R + +A Sbjct: 63 LSYGMGEDYSKLHAHCEEHGIKHSVIESNIYEISGDTIRENSSFCSYFSRMRRGALYTYA 122 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + AH DD E+ +M + A L + + I RP + R Sbjct: 123 LEKGFNKLAIAHHLDDAAESFFMNFIHNGA-----LRTLAPIYKSKRGITIIRPLIFVRE 177 Query: 175 EDIRS 179 +R Sbjct: 178 RQLRD 182 >gi|170780553|ref|YP_001708885.1| hypothetical protein CMS_0097 [Clavibacter michiganensis subsp. sepedonicus] gi|169155121|emb|CAQ00221.1| conserved hypothetical protein [Clavibacter michiganensis subsp. sepedonicus] Length = 341 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 114/307 (37%), Gaps = 16/307 (5%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 LVA+SGG+DS+ L A DH L++ + D +D L + Sbjct: 35 LVALSGGADSLALAAAAAFEGPRAGVAVGAVVV---DHGLQDGSADVAARAADAARALGL 91 Query: 83 -AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 V + + +G AAAR ARYA + + + ++ AHT DDQ ETV + R Sbjct: 92 APVVVTRVRVDRSASGPEAAARAARYAAFDDALRATGSRALLLAHTLDDQAETVLLGLAR 151 Query: 142 DYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 L GM + + RP L R R+ + + +DP N D + Sbjct: 152 GSGA--ASLHGMARSTPARTAGAVHLRPLLGIRAAITRAACADQGLDPWQDPHNADPSYA 209 Query: 201 RVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 RVRVR V + L + + ++ + + A ++ + I Sbjct: 210 RVRVRHDVLPVLERELGPGIAVALARTADQLREDDDALEHFAAEMVEEIADHAEAGISLE 269 Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312 +L L L+R AA L +E L +G V + V + R+ Sbjct: 270 VASLLAAPPALRHRLIR-LAAREEFAAHLSRTHVLEVARLVTDWHGQGPVDLPGVRVLRK 328 Query: 313 ANFLWIT 319 + ++ Sbjct: 329 DELIVLS 335 >gi|251773216|gb|EES53768.1| TRNA(Ile)-lysidine synthetase [Leptospirillum ferrodiazotrophum] Length = 439 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%) Query: 67 KDEVRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + +V+ + +RL S + +PQ R+ R + + +++ Sbjct: 6 ARDKDFVTSLAARLGARLVLGESRSIEKRRPQVS-ETLLRQERQDFFNAYLAENPRSVLF 64 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD++ETV R +G+ + + N I RP L RE+IR L + Sbjct: 65 LGHQKDDRIETVLANLFRGTGPRGL-------VGIPEKNGKIYRPLLFLEREEIRQALRE 117 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF----QDLRVKVNNAVAMLIP 239 ++ EDP+N D R R+R +R + +++ + + Sbjct: 118 AGEAFMEDPANFDLGPLRNRIRLELRPAIDRIFPGGTAHLDALAHHMAQELSASAPLSAG 177 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSG 297 L + +S + + + Q + LP R++ R + SG Sbjct: 178 PLLIFEDPGYVRLSLRLFRALAPSRQAAFSRNILDRQRQWKLPLPPERNLLRTLATPPSG 237 Query: 298 KRGCVSIGR 306 +G Sbjct: 238 PLRHFPLGG 246 >gi|315052150|ref|XP_003175449.1| PP-loop ATPase superfamily protein [Arthroderma gypseum CBS 118893] gi|311340764|gb|EFQ99966.1| PP-loop ATPase superfamily protein [Arthroderma gypseum CBS 118893] Length = 428 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL P I + SGG DS L L ++ + ++G + +S+D ++ D + V Sbjct: 46 SLFAPGERIAIGASGGKDSTVLASVLKTLNARYNYG-LDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS + G R + A +N + Sbjct: 105 KRNAIQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + S T ++ S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|123439490|ref|XP_001310516.1| hypothetical protein [Trichomonas vaginalis G3] gi|121892289|gb|EAX97586.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 280 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 17/200 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---D--HCLRETAKDEVRYV 73 IL+ +SGG DS+ L L + +++F + A + + + + + +Y+ Sbjct: 28 GDRILIGLSGGKDSLTLTHYLSEWMREKNFS-FQVVAAHIKFSNLPYGI------DAKYL 80 Query: 74 SDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 D CS ++ + + R A + E A+ N + H Sbjct: 81 EDFCSSRKVEYHLVEDQIRDVYLENEHKETCIHCSRFRRAKLMELARKFNCNKLTLGHHL 140 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD + T+ M + GM + N+ + RP DI+ F + Sbjct: 141 DDIVATLIMNMTQHGRFAGMAVKLDITVGEEKYNMTMIRPLAYTPEMDIKQFCAENEFQP 200 Query: 189 CEDPSNTDDRFERVRVRRFV 208 + D R + R+ V Sbjct: 201 AKCRCPWGDTGVRSKTRQAV 220 >gi|302845885|ref|XP_002954480.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f. nagariensis] gi|300260152|gb|EFJ44373.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f. nagariensis] Length = 455 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 17/211 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + +A SGG DS L + ++ + +G + +S+D + D + V Sbjct: 46 KLFRPGERVAIAASGGKDSTVLAHIMTTLNARYGYG-LDLFLLSIDEGIAGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + I +VVS+K+ R + A A I Sbjct: 105 KRNEQQYGIPLTVVSYKDLYGWTMDEIVAQIGTKNNCTFCGVFRRQALDRGAVLAGANKI 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFL 181 T H DD ETV + R + LS + I D L +PF ++I + Sbjct: 165 ATGHNADDVAETVLLNILRGDVPR---LSRCANIITGGDSPLPRVKPFKYAYEKEIVLYA 221 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 222 YYKKLDYFSTECVYAPYAARGFAREFIKDLE 252 >gi|313203419|ref|YP_004042076.1| pp-loop domain protein [Paludibacter propionicigenes WB4] gi|312442735|gb|ADQ79091.1| PP-loop domain protein [Paludibacter propionicigenes WB4] Length = 258 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 83/237 (35%), Gaps = 35/237 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----- 68 R + HIL+ +SGG DS+ L+ L + K +A+ + + + Sbjct: 27 RLIDNDDHILIGLSGGKDSLALVELLGE-RQKIFVPRFKVTAVHI-------SVENIPYQ 78 Query: 69 -EVRYVSDVCSRLRIA--HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ Y+ C++ I H V + ++ R + + A+ + + Sbjct: 79 SDLEYLKTYCNKFDIPFVHHVTRFDDTTDTHKSTCFLCSWHRRKALFDVARNLGCNKLAL 138 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED------IR 178 H DD ET+ + +G + + ++ I RP ++ I Sbjct: 139 GHHLDDITETLLLNLF----YQGSFGTMPPKLKMNKFDMAIIRPLALISEKEMKEMERIE 194 Query: 179 SFLLQ-RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++ Q +N +D S D + + +++ ++ + + + + Sbjct: 195 AYQKQIKNCPHEKDSSRRDAK-------NLISELEKWNPDVRQSIWAAMENIKSEYL 244 >gi|327401180|ref|YP_004342019.1| hypothetical protein Arcve_1298 [Archaeoglobus veneficus SNP6] gi|327316688|gb|AEA47304.1| protein of unknown function UPF0021 [Archaeoglobus veneficus SNP6] Length = 307 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 24/218 (11%) Query: 7 ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR+ V R + I +A+SGG DS+ L AL + +R ++F AI++D ++ Sbjct: 32 KRVRYAVKKYRMIESGDKIAIALSGGKDSVALTFALDRLYGERK--DVEFVAITIDEGIK 89 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEH 113 V ++ S+L I H +VS+K R L++ Sbjct: 90 GYRPPTVEIAREITSQLGIEHHIVSFKENFGMALDEMVKLGDKKPCTYCGVFRKYLLNRT 149 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + AT + TAH DD+ +T+ + + E+ L+ + + + +PF Sbjct: 150 ARELGATKLATAHNLDDETQTILLNFLQADIER---LARLVPQRVQKGLVMRIKPFREIY 206 Query: 174 REDIRSFLLQRNISWCEDPSNTDD-RFE--RVRVRRFV 208 +++ + L ++ N + R +R F+ Sbjct: 207 EKEVVVYCLLFDLPM---DMNECPYSYFPVRAAIRDFL 241 >gi|295104134|emb|CBL01678.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Faecalibacterium prausnitzii SL3/3] Length = 253 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 20/222 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVR 71 + ++V VSGG DS+ L I L + F + A++ DH + Sbjct: 11 IAPGDRVMVGVSGGKDSVALTIGLSMLRKYIGF-DYEVVAVTLDPQFDHQ-----PMDYS 64 Query: 72 YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++++ + I + V + + + A + R + A+ + + Sbjct: 65 ALAELFRQHGIPYEVRRTEIGPVVFEYRKEKNPCALCAKLRRGALHTAAQELGCNKVALG 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET YM R +G T L +L + RP L +++ + + Sbjct: 125 HHLDDAVETFYMNLWR----EGRIGCFSPVTYLSQRDLTLIRPMLLATEYEVQCAVREAG 180 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + + D R + + FV++ + K L+ Sbjct: 181 LPIVKSRCPADGVTVREQTKEFVQERCRTDHAFRQKTLHALQ 222 >gi|159486883|ref|XP_001701466.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii] gi|226711414|sp|A8JF71|CTU1_CHLRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|158271648|gb|EDO97463.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii] Length = 357 Score = 106 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 18/232 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + VA SGG DS L + ++ + ++G + +S+D + D + V Sbjct: 50 HGERLAVAASGGKDSTVLAHIMSTLNARYNYG-LDLFLLSIDEGITGYRDDSLETVKRNE 108 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I VVS+K R + A + A I T H Sbjct: 109 QQYGIPLKVVSYKELYGWTMDEIVSQIGTKNNCTFCGVFRRQALDRGAVLMGANKIATGH 168 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQR 184 DD ETV + R + G C I+ D +L +PF ++I + + Sbjct: 169 NADDVAETVLLNILRGDVPR----LGRCANIITGEDSSLPRVKPFKYAYEKEIVLYAYYK 224 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + + R R F++D++ + + V A + Sbjct: 225 KLDYFSTECIYAPFAARGFAREFIKDLEAARPLAIIDVIRSAEDFVFAAASD 276 >gi|268573102|ref|XP_002641528.1| Hypothetical protein CBG09825 [Caenorhabditis briggsae] Length = 657 Score = 106 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 27/228 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57 M+ + + ++ + +LV +SGG DS+ LL L + + + AI+ Sbjct: 406 MYKKVTDVIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFQLGAIT 464 Query: 58 VDHCLRETAKDEVRY----VSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARY 107 VD + + + + C +L I + ++ P + A + Sbjct: 465 VD----PGS---AEFNPRPLIEYCRKLNIDYFYEEQDIIGAAMKTPGLRSICAFCSRMKR 517 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 ++ A+ ++ DD E+ ++ + ++ G + D L + R Sbjct: 518 GRLAAAAQFHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDNQLRVIR 573 Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213 P + R + +R+F ++ + P+ + ER R+++ + +L Sbjct: 574 PLIMVREKALRNFAEEKKLPVVAENCPACFNQATERHRIKQLLAQQEL 621 >gi|308502159|ref|XP_003113264.1| hypothetical protein CRE_25488 [Caenorhabditis remanei] gi|308265565|gb|EFP09518.1| hypothetical protein CRE_25488 [Caenorhabditis remanei] Length = 985 Score = 106 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 21/225 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57 M+ + + ++ + +LV +SGG DS+ LL L + + + AI+ Sbjct: 731 MYKKTTDIIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQLRCNKARSTSFELGAIT 789 Query: 58 VDHCLRETAKD-EVRYVSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALI 110 VD + + R + + C +L I + ++ P + A + + Sbjct: 790 VD----PGSAEYNPRPLIEYCRKLNIDYFYEEQDIIGAAKKTPGLRSICAFCSRMKRGRL 845 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A+ N ++ DD E+ ++ + ++ G + D L + RP + Sbjct: 846 AAAAQYHNWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDGTLRVIRPLV 901 Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213 R + +R+F + + P+ + ER R+++ + +L Sbjct: 902 MVREKALRNFAEDKKLPVVAENCPACFNQATERHRIKQLLAQQEL 946 >gi|320032845|gb|EFW14795.1| PP-loop ATPase superfamily protein [Coccidioides posadasii str. Silveira] Length = 431 Score = 106 bits (266), Expect = 6e-21, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS + G R + A + + Sbjct: 105 KRNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +N+ + R R ++D++ Sbjct: 224 HKNLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|229819197|ref|YP_002880723.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333] gi|259533670|sp|C5BYK3|TILS_BEUC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|229565110|gb|ACQ78961.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333] Length = 330 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 11/180 (6%) Query: 17 VYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + PA +LVA SGG+ L + A+ VDH L+ + + +D Sbjct: 22 LEPARGVLVACSGGA---DSLALAAATAFVAPRAGRAAGAVVVDHALQAGSAEVAARAAD 78 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 C L + VV G AAR ARYA + ++ +++ HT DDQ ETV Sbjct: 79 QCRGLGLEARVVRVDVDIALGGPEGAARAARYAALEAASREAGDAVVLLGHTLDDQAETV 138 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 +R R + + +RPFL R +R + ++ EDP+N Sbjct: 139 LLRLARGSGARSLAGM-------PRRRGVFARPFLHLERARLREVVDAVGLTPWEDPTNA 191 >gi|312143894|ref|YP_003995340.1| PP-loop domain protein [Halanaerobium sp. 'sapolanicus'] gi|311904545|gb|ADQ14986.1| PP-loop domain protein [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 10/190 (5%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS LL L + A+ VD ++ E +S + Sbjct: 27 DKIAVGVSGGKDSSFLLYCLKILQLHFKI-DFSLKAVYVDPGF-GDSQAEDN-LSTLTKE 83 Query: 80 LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 L + V+ K + + + R I E+ IN + H DD +ET Sbjct: 84 LGVDFKVIRTKIKDYIQKDSNPCSKCAHFRKGAIIEYLNKINYNKLAFGHHLDDAVETFL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + + + + L + + I RP + R I + + ++N + D Sbjct: 144 LSIFYSGQLQAL----KANRYLSENKINIIRPLIYLRETQIENEIEKKNFKIAKSSCPYD 199 Query: 197 DRFERVRVRR 206 D R +VR+ Sbjct: 200 DASARSKVRQ 209 >gi|123508298|ref|XP_001329605.1| hypothetical protein [Trichomonas vaginalis G3] gi|121912651|gb|EAY17470.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 328 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 32/218 (14%) Query: 15 SLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70 +L+ P ++ + VSGG DS LL LH++ + R + I +D + R+ A + V Sbjct: 44 NLIQPGDVVGIGVSGGKDSTCLLHVLHTI-NQRHNMGFQIHMICIDEGIVGYRDNALEAV 102 Query: 71 RYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINA 119 ++ + + + +++ + + R + A + A Sbjct: 103 KFNKE---KYGLPCTIIPFNELFGWNLDDIYKATHTKETCTYCGIFRRRSLDIAAARVGA 159 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEK-GMGL----SGMCDTILYDLNLWISRPFLRCRR 174 + H +D ETV + R + G + G+ + +PF + Sbjct: 160 NKVAVGHNANDVAETVLLNVLRGDINRFGRSVDIKTDGISSNVEEGTVAPRIKPFAFQTQ 219 Query: 175 EDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRFVRD 210 DI ++ +N+ + E P + RRF R+ Sbjct: 220 RDIVLYVHFQNLRYYAVECP------YAVTAFRRFSRE 251 >gi|304314090|ref|YP_003849237.1| ATPase [Methanothermobacter marburgensis str. Marburg] gi|302587549|gb|ADL57924.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg] Length = 314 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 14/180 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LV +SGG DS+ + L + R+ I+ A+++D + +D +R C Sbjct: 47 RGDRVLVGLSGGKDSVMVTDILDEL---RNRNIIELEAVTIDEGISGYREDGIRAAGRFC 103 Query: 78 SRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + I H VV K+ P G R +++ A+ AT I T H Sbjct: 104 AERGIPHRVVKLKDYAGITLDEIMKNPSRGACTYCGVFRRWILNREARKSGATKIATGHN 163 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD+ + + M E + + T + +P ++ ++L R + Sbjct: 164 LDDECQAIVMNYLEGNLENLTRIGPVTSTAG-GRFIPKIKPLREIPEREVGLYVLARGLD 222 >gi|294630626|ref|ZP_06709186.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. e14] gi|292833959|gb|EFF92308.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. e14] Length = 317 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 12/305 (3%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+DSM L AL I+ ++VDH L+ + V+ L Sbjct: 17 VLVACSGGADSMALASALAFEAPKLG---IRAGGVTVDHGLQTGSDLRAGEVAQRLRELG 73 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + G AAAR+ARYA + A+ A ++ + Sbjct: 74 LDPVDAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAVLLGPHPR-RPRPRPYCWGS 132 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 A LSGM RPFL R+ R L +++ +DP N D + R Sbjct: 133 PAAPGIRSLSGMAAVS--GAGGRYRRPFLHLDRQTARKACLVQSLPVWDDPHNADPAYTR 190 Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 R+R + + + + L +A+ + + L Sbjct: 191 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWASQADAAVRDDAGRLECAKL 250 Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANF 315 ++ + + AAI G + + + L +G +G +++ V+ RR Sbjct: 251 SVLPPAVRRRILRRAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVARRQGG 310 Query: 316 LWITR 320 + R Sbjct: 311 RLVIR 315 >gi|303322809|ref|XP_003071396.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] gi|240111098|gb|EER29251.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp] Length = 431 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 14/209 (6%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 L YP + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 47 LFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVK 105 Query: 75 DVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + + +VS + G R + A + ++ Sbjct: 106 RNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHVV 165 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD ETV M R + + + T + S+P ++I + Sbjct: 166 TGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAHH 224 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212 +N+ + R R ++D++ Sbjct: 225 KNLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|119496839|ref|XP_001265193.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri NRRL 181] gi|119413355|gb|EAW23296.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri NRRL 181] Length = 420 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL YP + + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 46 SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + G R + A + + Sbjct: 105 KRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + D+ D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|70990742|ref|XP_750220.1| PP-loop ATPase superfamily protein [Aspergillus fumigatus Af293] gi|66847852|gb|EAL88182.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus Af293] gi|159130696|gb|EDP55809.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus A1163] Length = 420 Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 SL YP + + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 46 SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + G R + A + + Sbjct: 105 KRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + G S + D+ D + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|329960742|ref|ZP_08299066.1| PP-loop family protein [Bacteroides fluxus YIT 12057] gi|328532457|gb|EGF59255.1| PP-loop family protein [Bacteroides fluxus YIT 12057] Length = 247 Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + + V + + + V Y+ + Sbjct: 31 GDKILIGLSGGKDSLALVELLAK-RARIYKPEFSIVVVHVVMKN--IPYQSD--VEYLRE 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + + + R + AK I H DD L Sbjct: 86 YVESWGVPFLLYETEFDAATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLMELAQARG 194 >gi|322698661|gb|EFY90429.1| VEG136 protein [Metarhizium acridum CQMa 102] Length = 393 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 21/228 (9%) Query: 2 FLSPIE-SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 FLS E V + S L YP + + SGG DS L L ++ ++R + +S Sbjct: 29 FLSAFEDEVHHTITSSKLFYPGEKVAIGASGGKDSTVLASVLKTL-NERHNYGLDLVLLS 87 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREAR 106 +D ++ D + V + + +V + + G R Sbjct: 88 IDEGIKGYRDDSLETVKRNAVQYDMPLKIVGYDELFGWTMDQVVETIGKKGNCTYCGVFR 147 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 + A +N ++T H DD ETV M R + LS + + I Sbjct: 148 RQALDRGANLLNIKHVVTGHNADDIAETVLMNLLRGDLPR---LSRSTSIVTGSASTGIQ 204 Query: 167 R--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R P ++I + + + + R R ++ ++ Sbjct: 205 RSKPLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARTLIKSLE 252 >gi|160944932|ref|ZP_02092159.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii M21/2] gi|158444116|gb|EDP21120.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii M21/2] Length = 266 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 20/222 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVR 71 + ++V VSGG DS+ L I L + F + A++ DH + Sbjct: 24 IAPGDRVMVGVSGGKDSVALTIGLSMLRKYIGF-DYEVVAVTLDPQFDHQ-----PMDYS 77 Query: 72 YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++++ + I + V + + + A + R + A+ + + Sbjct: 78 ALAELFRQHGIPYEVRRTEIGPVVFEYRKEKNPCALCAKLRRGALHTAAQELGCNKVALG 137 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET YM R +G T L +L + RP L +++ + + Sbjct: 138 HHLDDAVETFYMNLWR----EGRIGCFSPVTYLSQRDLTLIRPMLLATEYEVQCAVREAG 193 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + + D R + + FV++ + K L+ Sbjct: 194 LPIVKSRCPADGVTVREQTKEFVQERCRTDHAFRQKTLHALQ 235 >gi|71748080|ref|XP_823095.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70832763|gb|EAN78267.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 336 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 17/212 (8%) Query: 15 SLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L P I VA SGG DS L+ + +L+++ I+ +S+D + D ++ Sbjct: 47 KLFKPGDI-VACGASGGKDSTVLIHLMK-LLNEQHEYGIQLLLLSIDEGIAGYRDDSLKT 104 Query: 73 VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121 V + V+S+K R + A + AT Sbjct: 105 VHRNAEVYNLPLRVLSYKELYGWTMDEVVKVTGLRSSCTYCGVFRRQALDRGAAMLGATK 164 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD ET+ M R + + L +P ++I + Sbjct: 165 VVTGHNADDLAETILMNILRGDLPRLS--RCTSAITSGESLLPRVKPLKYAYEKEIVLYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213 + + + R R +++I++ Sbjct: 223 HFKKLDYFTTECTYSKEAFRSEARTLLKNIEI 254 >gi|224372386|ref|YP_002606758.1| PP-loop family protein [Nautilia profundicola AmH] gi|223589891|gb|ACM93627.1| PP-loop family protein [Nautilia profundicola AmH] Length = 259 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 26/216 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++VA SGG DS +L L + F K A+++D + + C Sbjct: 31 GDRVMVAFSGGKDSFVMLHVLKRMQLIAPF-KFDLLAVTID----AGTGIDYTPLKKHCE 85 Query: 79 RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + + + +P + R + A + I H FDD Sbjct: 86 EFGIEYIIYETPILEILEEKKRPGSSACGFCARMRRGALYTKALELGYNKIALGHHFDDA 145 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET +M + + M + + RP ++ R + I+ Q N + Sbjct: 146 VETFFMSMFYNGMMRS-----MPPKYKAYNEIEVIRPLIKVREKWIKYMSEQNNFPIIDG 200 Query: 192 PS-----NTDDR----FERVRVRRFVRDIDLHALYL 218 S N D+ + R ++ ++R+++ L Sbjct: 201 ESSCLAFNESDQAKTPYVRSEIKEWLRNMEEKEPKL 236 >gi|312065342|ref|XP_003135744.1| tRNA 2-thiolation protein 1 [Loa loa] gi|307769103|gb|EFO28337.1| tRNA 2-thiolation protein 1 [Loa loa] Length = 321 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 16/207 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V SGG DS L+ L+ + +G + +S+D + D ++ V Sbjct: 47 KGKKVAVGASGGKDSTVLIHVLNKLNQKYDYG-LDIILLSIDEGITGYRDDSLKAVERNR 105 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + ++S+K + R + A A +I T H Sbjct: 106 NEYGLPLIIMSYKQLYGWTMDEIVSAVGVRNNCTFCGVFRRRALDRGAVECGANIIATGH 165 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD ETV + R + L D + + L ++P +DI + Sbjct: 166 NADDMAETVLLNVLRGDLAR---LQRCTDIVTELEGCLPRTKPLKYVFEKDIVMYAHFNG 222 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R VR +V+ ++ Sbjct: 223 LDYFSTECRYAPDSFRNYVRMYVKKLE 249 >gi|194863280|ref|XP_001970365.1| GG10584 [Drosophila erecta] gi|226711417|sp|B3N7L9|CTU1_DROER RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|190662232|gb|EDV59424.1| GG10584 [Drosophila erecta] Length = 343 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R ++ +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184 DD ETV M R + L I +P ++I + + Sbjct: 168 NADDIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYK 224 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|39945262|ref|XP_362168.1| hypothetical protein MGG_04613 [Magnaporthe oryzae 70-15] gi|145021450|gb|EDK05579.1| hypothetical protein MGG_04613 [Magnaporthe oryzae 70-15] Length = 412 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 17/213 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L ++ ++R ++ +SVD ++ D + V Sbjct: 46 NLFTPGERVAIGASGGKDSTVLASVLKTL-NERYKYGLELVLLSVDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + AK ++ + Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVETVGKKGNCTYCGIFRRQALDRGAKVLDIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +T H DD ETV M R + + ++ L D N+ S+P ++I Sbjct: 165 VTGHNADDVAETVLMNLLRGDLARLSRSTNIMTGANSALSD-NVKRSKPLKYAYEKEIVL 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R +++++ Sbjct: 224 YAHHKKLDYFSTECLYSPEAFRGSARSLIKNLE 256 >gi|160889079|ref|ZP_02070082.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492] gi|270293809|ref|ZP_06200011.1| conserved hypothetical protein [Bacteroides sp. D20] gi|156861546|gb|EDO54977.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492] gi|270275276|gb|EFA21136.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 249 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + A+ V + + + V Y+ + Sbjct: 31 GDKILIGLSGGKDSLALVELLARRARVYK-PRFSVVAVHVVMKN--IPYQSD--VDYLRE 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + + + R + AK I H DD L Sbjct: 86 YVESWGVPFVLFETEFDATTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G S ++ ++ I RP D+ R Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAQVRG 194 >gi|326482259|gb|EGE06269.1| ATP-binding domain-containing protein 3 [Trichophyton equinum CBS 127.97] Length = 427 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +VS + G R + A +N ++T Sbjct: 107 NAIQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + S T ++ S+P ++I + + Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++D++ Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|315186040|gb|EFU19803.1| PP-loop domain protein [Spirochaeta thermophila DSM 6578] Length = 276 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYV 73 L +L+ +SGG DS+ + + L S+ A+ ++ +E + +E + Sbjct: 38 LGEGDRVLLGISGGKDSLVMALIL-SLRRRWLPIHYHLEAVHLN--WQEYPISDEETDRL 94 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + ++ + Q AR R L+ + K + ++ H D Sbjct: 95 AAYFDAIDVPFTQITTTMFPGHYDGQFNCYLCARN-RKRLLFTYMKEHDIPILALGHHLD 153 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET + A +G + M + + RP +R+ + + + Sbjct: 154 DIVETTLINM----AMRGRLFTMMPVQPFFGGLFTLIRPLCEVPESQVRTAVEKLGLPVV 209 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D R+RV+ V + + K ++ L Sbjct: 210 KPDCPYKDTNLRLRVKPLVEQLATLDPLAREKIYRSL 246 >gi|302500828|ref|XP_003012407.1| hypothetical protein ARB_01366 [Arthroderma benhamiae CBS 112371] gi|291175965|gb|EFE31767.1| hypothetical protein ARB_01366 [Arthroderma benhamiae CBS 112371] Length = 427 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +VS + G R + A +N ++T Sbjct: 107 NAIQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + S T ++ S+P ++I + + Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++D++ Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|302655364|ref|XP_003019472.1| hypothetical protein TRV_06501 [Trichophyton verrucosum HKI 0517] gi|291183197|gb|EFE38827.1| hypothetical protein TRV_06501 [Trichophyton verrucosum HKI 0517] Length = 427 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +VS + G R + A +N ++T Sbjct: 107 NAVQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + S T ++ S+P ++I + + Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++D++ Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|24651972|ref|NP_610451.1| CG8078 [Drosophila melanogaster] gi|122102795|sp|Q7JWW5|CTU1_DROME RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|7303947|gb|AAF58991.1| CG8078 [Drosophila melanogaster] gi|20976850|gb|AAM27500.1| LD03161p [Drosophila melanogaster] gi|220950426|gb|ACL87756.1| CG8078-PA [synthetic construct] Length = 343 Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R ++ +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184 DD ETV M R + L I +P ++I + + Sbjct: 168 NADDIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYK 224 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|296817831|ref|XP_002849252.1| VEG136 protein [Arthroderma otae CBS 113480] gi|238839705|gb|EEQ29367.1| VEG136 protein [Arthroderma otae CBS 113480] Length = 420 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V I + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FVPGERIAIGASGGKDSTVLASVLKTL-NERYNYGLNLVLLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +VS + G R + A +N ++T Sbjct: 107 NAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + S T ++ S+P ++I + + Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIVTGSAASDIKRSKPLKYAYEKEIVLYAHYK 225 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++D++ Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|195474928|ref|XP_002089738.1| GE22576 [Drosophila yakuba] gi|226711424|sp|B4P3W7|CTU1_DROYA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|194175839|gb|EDW89450.1| GE22576 [Drosophila yakuba] Length = 343 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 17/205 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + VA SGG DS L L +L++R ++ +S+D + D + V Sbjct: 52 KVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNRDDY 110 Query: 81 RIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ ++S++ ++ R + AK + I T H D Sbjct: 111 QMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGHNAD 170 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187 D ETV M R + L I +P ++I + + + Sbjct: 171 DIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYKKLV 227 Query: 188 WCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 228 YFSTECVFAPNAYRGHARAFLKDLE 252 >gi|317479355|ref|ZP_07938489.1| PP-loop family protein [Bacteroides sp. 4_1_36] gi|316904429|gb|EFV26249.1| PP-loop family protein [Bacteroides sp. 4_1_36] Length = 234 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + A+ V + + + V Y+ + Sbjct: 31 GDKILIGLSGGKDSLALVELLARRARVYK-PRFSVVAVHVVMKN--IPYQSD--VDYLRE 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + + + R + AK I H DD L Sbjct: 86 YVESWGVPFVLFETEFDATTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G S ++ ++ I RP D+ R Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAQVRG 194 >gi|257075864|ref|ZP_05570225.1| ATPase of the PP-loop superamily [Ferroplasma acidarmanus fer1] Length = 311 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 90/239 (37%), Gaps = 26/239 (10%) Query: 2 FLSPIES-VRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 F++ +E V+ +R V I VA+SGG DS L LH +LS+R ++ +A Sbjct: 26 FITYVEKRVKREIREQVDFGNKKTRISVAISGGKDSSATLYLLHKILSERR--NLELTAF 83 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREA 105 +VD + + +C L I H+V+S+K + +T + Sbjct: 84 TVDEGIEGYRSTGLEKARKLCENLGIEHNVISYKENYGYSLDEIMKIDKKTISCSHCGPM 143 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R L++ ++ + + DD +++ M + + ++ + + + Sbjct: 144 RRQLMNRISEYTESDYVALGINLDDYAQSILMNVAKGDVARYARMA--PHSYTREGLVPR 201 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE---RVRVRRFVRDIDLHALYLKMK 221 P + +++ + + I + D S + R R + ++ K Sbjct: 202 ILPLRKIPEKEVVLYAILNGIDF--DSS-WCPYYSMAQRNSFRDIIEKLEKETPGTKFA 257 >gi|84489152|ref|YP_447384.1| ATPase [Methanosphaera stadtmanae DSM 3091] gi|84372471|gb|ABC56741.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091] Length = 319 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 23/209 (11%) Query: 2 FLSPIES--VRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F IE +R + + +LV +SGG DS+ LL L+ + I A++ Sbjct: 30 FRKSIEKQVLRTIKKEKLVTKGDKVLVGLSGGKDSVALLKILNILKEK---NIITLEAVT 86 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREA------- 105 +D + ++ +R + L I H +VS+K+ A +A Sbjct: 87 IDEGISGYREEGIRIAKETAKALDIKHHIVSFKDKYNFTIDKIMEAEAKCNDAQHACTYC 146 Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R + ++ A+ +NAT + T H DD+ +++ M + + + Sbjct: 147 GVFRRQIFNQVARDVNATKLATGHNLDDETQSIVMNYLEGNVNNMVRIGYKTLSQDKRFT 206 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCED 191 I +P + ++I ++L+ D Sbjct: 207 QKI-KPLRKIPEKEIGLYVLESGFEVHFD 234 >gi|254168818|ref|ZP_04875659.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|197622255|gb|EDY34829.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] Length = 308 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 19/202 (9%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 FL I+ V+ +R IL+AVSGG DSM L +H + ++ A++ Sbjct: 26 FLEFIDRKVKREIREQAHFKKGDKILIAVSGGKDSMLTLYQMHKIFGKWR--DLELVAVT 83 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREAR 106 VD + + K + + +L I H V+++K + R Sbjct: 84 VDEGIGDFRKSCAKVANTYAKKLGIKHEVITFKEYLGITTDDVARVDKELKPCTYCGVFR 143 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 +++ ++K I A ++ DD +++ M R + L+ + I Sbjct: 144 RKVLNMYSKEIGANYLILGLNLDDIAQSIIMNITRGDTARLARLAPHKKIREGFIPRII- 202 Query: 167 RPFLRCRREDIRSFLLQRNISW 188 P R R +++R ++ NI + Sbjct: 203 -PLRRVREDEVRLYMNLANIPY 223 >gi|257438080|ref|ZP_05613835.1| ExsB family protein [Faecalibacterium prausnitzii A2-165] gi|257199411|gb|EEU97695.1| ExsB family protein [Faecalibacterium prausnitzii A2-165] Length = 266 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 30/219 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVRYV 73 I+V VSGG DS+ L I L + F + A++ DH + + Sbjct: 26 PGDKIMVGVSGGKDSVALTIGLAQLRRYLGF-DYEVVAVTLDPQFDHQ-----AVDYSPL 79 Query: 74 SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + +R + + V + + + + R + A+ + + H Sbjct: 80 AALFARYGVPYEVRRTEIGPIVFEYRQEKNPCSLCARLRRGALHTAAQELGCNKVALGHH 139 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET YM R +G T L L + RP L ++R + + + Sbjct: 140 LDDAVETFYMNLWR----EGRIGCFSPVTQLDRRGLTLIRPMLLATEHEVRCAVKEEDFP 195 Query: 188 WCEDPSNTDD--------RFERVRVR--RFVRDIDLHAL 216 + D F R R R R LHAL Sbjct: 196 IVKSRCPADGVTVREQTKDFVRERCRTDHAFRQKTLHAL 234 >gi|297526784|ref|YP_003668808.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] gi|297255700|gb|ADI31909.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] Length = 331 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 114/295 (38%), Gaps = 39/295 (13%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR +R HI+VAVSGG DS+ LL L+++ + + +A+ +D +R Sbjct: 33 KKVRRTIRRYKMFSSKEHIVVAVSGGKDSLSLLHYLYNL--SKRVPGWRITALLIDEGIR 90 Query: 64 ETAK----DEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE 104 D +R V + L + + + S++ + GL + Sbjct: 91 GYRDITKKDFLRVV----NELGVDYKIASFEEYFGYTLDEIVRIGREKGLPYLPCSYCGV 146 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R L+++ A+ + T++ TAH DD ++T M + +K + L+ + + + + Sbjct: 147 FRRYLLNKVARELGGTVLATAHNLDDVVQTYVMNIINNSWDKILRLAPVTGPLDHPKFVR 206 Query: 165 ISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 +PF ++ + + N+ + E P + R +R +R L+ L K Sbjct: 207 RVKPFYEILEKETTLYSILNNLYPKFVECP------YARFNIRWMIR-RQLNELEEKYPG 259 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAIC 275 + ++ + ++ K+ + I + L R I Sbjct: 260 TKYSLLRSLLRIIDILSKHRDEIIHGEIKTCKVCGEPSAHEICRACLYRYELGIM 314 >gi|312220546|emb|CBY00487.1| hypothetical protein [Leptosphaeria maculans] Length = 534 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 23/225 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I + R F R I + SGG DS L L ++ +G + +S+D ++ Sbjct: 42 ITTNRLFTR----GEKIAIGASGGKDSTVLASVLKTLNKRYDYG-LDLILLSIDEGIKGY 96 Query: 66 AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114 D + V + + +++ + G R + A Sbjct: 97 RDDSLETVKRNAEQYGMELTILGYEELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGA 156 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISR 167 + ++T H DD ETV M R + + N+ S+ Sbjct: 157 ARLGVRHVVTGHNADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASSDPASNTNVRRSK 216 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 P ++I + + + + R R +++++ Sbjct: 217 PLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGSARALIKNLE 261 >gi|310778071|ref|YP_003966404.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926] gi|309747394|gb|ADO82056.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926] Length = 319 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 32/249 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +PI + I V VSGG DS+ + AL + +F + I + Sbjct: 88 NPIGKAMHKYNMIEAGDSIAVGVSGGKDSLTTINALVRIKKIVNF-DFEIIPIHIH---- 142 Query: 64 ETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAK 115 + D Y D C ++ + V K + R ++ K Sbjct: 143 -PSTDSSSYNKTEDYCKKMGLELQVFETDLQNLLFEEKKEKNPCFLCGRIRRGMLYRIMK 201 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 N + H DD +ET M +G D + + RP + Sbjct: 202 EQNINKLALGHHKDDIIETFLMNVF----YQGNMNVMKPAYYSKDYGVMVIRPLSFVEEK 257 Query: 176 DIRSFLLQRNISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 +I ++ + N+ C +N + R R+RV+ + D+ K+ ++R + Sbjct: 258 NIIRYVRKTNLPILKSECAYETNENSR--RLRVKNIITDLS--------KENSEIRSVML 307 Query: 232 NAVAMLIPK 240 N++ L+ + Sbjct: 308 NSIKDLLEE 316 >gi|196012435|ref|XP_002116080.1| hypothetical protein TRIADDRAFT_30260 [Trichoplax adhaerens] gi|190581403|gb|EDV21480.1| hypothetical protein TRIADDRAFT_30260 [Trichoplax adhaerens] Length = 349 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 15/210 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + V SGG DS L L +L++R I +SVD + D + V Sbjct: 45 KLFQPGESVAVGASGGKDSTVLAYVLK-LLNERHNYGINLVLLSVDEGITGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + ++ +VS++ R + A + A I Sbjct: 104 KRNQQQYQLPLKIVSYEELYGWTMDAIVQKIGMKNNCTFCGVFRRQALDRGAMLVKADKI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + L +PF ++I + Sbjct: 164 VTGHNADDVAETVLMNVLRGDIARLR--RCTAIMTGTEGALPRCKPFKYTYEKEIVMYAY 221 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++D++ Sbjct: 222 FKKLDYFSTECVYSPNAYRGYARAYLKDLE 251 >gi|195120392|ref|XP_002004711.1| GI19452 [Drosophila mojavensis] gi|226711419|sp|B4KLL0|CTU1_DROMO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|193909779|gb|EDW08646.1| GI19452 [Drosophila mojavensis] Length = 343 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R + +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLDLVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184 DD ETV M R + L D I +P ++I + + Sbjct: 168 NADDIAETVLMNILRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYSYEKEIVMYAHYK 224 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|29349966|ref|NP_813469.1| hypothetical protein BT_4558 [Bacteroides thetaiotaomicron VPI-5482] gi|253569663|ref|ZP_04847072.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29341877|gb|AAO79663.1| conserved hypothetical protein [Bacteroides thetaiotaomicron VPI-5482] gi|251840044|gb|EES68126.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 248 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 13/176 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVR 71 R + IL+ +SGG DS+ L+ L + + A+ V + + + E Sbjct: 26 RLIEEGDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMN-NIPYQSDTE-- 81 Query: 72 YVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 Y+ C + + + R + AK I H Sbjct: 82 YLKAYCDSFGVPFVQYETSFDPATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DD LET+ M +G + ++ ++ I RP D+ Sbjct: 142 DDILETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCMVHEADLIELAALH 193 >gi|53712471|ref|YP_098463.1| hypothetical protein BF1179 [Bacteroides fragilis YCH46] gi|60680672|ref|YP_210816.1| hypothetical protein BF1146 [Bacteroides fragilis NCTC 9343] gi|253563497|ref|ZP_04840954.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52215336|dbj|BAD47929.1| conserved hypothetical protein [Bacteroides fragilis YCH46] gi|60492106|emb|CAH06869.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] gi|251947273|gb|EES87555.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 249 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 9/170 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV +SGG DS+ L+ L S + A+ V D Y+ + Sbjct: 31 GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88 Query: 79 RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + V ++ + R + AK I H DD LET+ Sbjct: 89 KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 M +G + ++ ++ I RP D+ R Sbjct: 149 LMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLELAQIRG 194 >gi|324516377|gb|ADY46509.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Ascaris suum] Length = 408 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 19/199 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAIS 57 ++ S E++ + + +LV +SGG DS+ LL LH R + + AI+ Sbjct: 137 LYKSATEAIHS-LNMIQDGDRVLVCLSGGKDSLSLLHILHHYQQRAMLRRKNRFRLGAIT 195 Query: 58 VDHCLRETAKD-EVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALI 110 VD + R + + C L I + + + A + + Sbjct: 196 VD----PGSTAYNPRPLIEYCRSLNIDYFYEEQNIIGQAARLSKCRSICAFCSRMKRGRL 251 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + AK ++ H DD E+ + + ++ G + I D L + RP + Sbjct: 252 AAAAKLHGYNVLAMGHHLDDLAESFLIAAFQN----GNLSTMKAVYITRDGALRVIRPLI 307 Query: 171 RCRREDIRSFLLQRNISWC 189 R + +R F + Sbjct: 308 YVREKALREFAESNKLPII 326 >gi|195332699|ref|XP_002033031.1| GM20632 [Drosophila sechellia] gi|226711421|sp|B4HSL7|CTU1_DROSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|194125001|gb|EDW47044.1| GM20632 [Drosophila sechellia] Length = 343 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R ++ +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + ++ +P ++I + + + Sbjct: 168 NADDIAETVLMNVLRGDTARLRRCTSI-RTGGGEDSIPRVKPLKYSYEKEIVMYAHYKKL 226 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 227 VYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|298384331|ref|ZP_06993891.1| PP-loop family protein [Bacteroides sp. 1_1_14] gi|298262610|gb|EFI05474.1| PP-loop family protein [Bacteroides sp. 1_1_14] Length = 248 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 13/176 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVR 71 R + IL+ +SGG DS+ L+ L + + A+ V + + + E Sbjct: 26 RLIEEGDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMN-NIPYQSDTE-- 81 Query: 72 YVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 Y+ C + + + R + AK I H Sbjct: 82 YLKAYCESFGVPFVQYETSFDPATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DD LET+ M +G + ++ ++ I RP D+ Sbjct: 142 DDILETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCMVHEADLVELAALH 193 >gi|302405961|ref|XP_003000817.1| ATP-binding domain-containing protein [Verticillium albo-atrum VaMs.102] gi|261360774|gb|EEY23202.1| ATP-binding domain-containing protein [Verticillium albo-atrum VaMs.102] Length = 399 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 21/220 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I S + F R + + SGG DS L L ++ ++R + +S+D ++ Sbjct: 42 ILSSKLFSR----GDRVAIGASGGKDSTVLASVLKTL-NERHDYGLDLILLSIDEGIKGY 96 Query: 66 AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114 D + V + + +VV + + G R + + Sbjct: 97 RDDSLETVKRNAIQYDMPLTVVGYDELYGWTMDQVVGTVGKKGNCTYCGVFRRQALDRGS 156 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172 K + ++T H DD ET+ M R + LS + D + + R P Sbjct: 157 KMLGIRHLVTGHNADDIAETILMNLLRGDLPR---LSRSTSIMTGDDSSDVKRSKPLKYS 213 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R +++++ Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARSLIKNLE 253 >gi|323455513|gb|EGB11381.1| hypothetical protein AURANDRAFT_4656 [Aureococcus anophagefferens] Length = 261 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 A +LVA SGG DS LL L R F I F ++V H ++ +V + Sbjct: 28 GAKVLVACSGGKDSNALLYLLKQAQQRRLFRGIDFDVVAV-HLDQKQPGHDVEPLRAWLE 86 Query: 79 -RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + V V +K + R ++ HA+ A ++ H DD Sbjct: 87 DDVGVDFQVIEEDTYSVVVDKTKAGKSYCSLCSRLRRGILYTHAERRGAGVLALGHHRDD 146 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 LET+ + + L M + + + RP + D+ ++ Sbjct: 147 ALETLLLNMVHNGQ-----LKSMPARYVASRGVDVVRPLMYAAEADLLAYADA 194 >gi|302327683|gb|ADL26884.1| PP-loop family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 255 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 16/216 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77 +L+A SGG DS LL+ L + L K + +AI + + A ++ + Sbjct: 41 GDRVLIATSGGKDSSVLLMELAARLGKFG-PKCELAAIHI---QSDFADKAPREFLQRMA 96 Query: 78 SRL-RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ V + + + R + + A N I H DD + Sbjct: 97 EEYPQVPFYFKDVAVEARLKEGRKLNCYWCSTQRRTELIKFASENNFNKIALGHHMDDIV 156 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ M KG SGM + Y+ I RP C +I ++ +I Sbjct: 157 ETLLMNML----YKGE-FSGMPPMVPYEKYPCSIIRPLCYCEESEIIAYAEDADIRKFTC 211 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 R +R ++ + + LK F+ +R Sbjct: 212 TCEFSKASHRKTIREEIKSLTKGSSTLKANLFESMR 247 >gi|261415733|ref|YP_003249416.1| PP-loop domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372189|gb|ACX74934.1| PP-loop domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 253 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 16/216 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77 +L+A SGG DS LL+ L + L K + +AI + + A ++ + Sbjct: 39 GDRVLIATSGGKDSSVLLMELAARLGKFG-PKCELAAIHI---QSDFADKAPREFLQRMA 94 Query: 78 SRL-RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 ++ V + + + R + + A N I H DD + Sbjct: 95 EEYPQVPFYFKDVAVEARLKEGRKLNCYWCSTQRRTELIKFASENNFNKIALGHHMDDIV 154 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ M KG SGM + Y+ I RP C +I ++ +I Sbjct: 155 ETLLMNML----YKGE-FSGMPPMVPYEKYPCSIIRPLCYCEESEIIAYAEDADIRKFTC 209 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 R +R ++ + + LK F+ +R Sbjct: 210 TCEFSKASHRKTIREEIKSLTKGSSTLKANLFESMR 245 >gi|195455591|ref|XP_002074786.1| GK22963 [Drosophila willistoni] gi|226711423|sp|B4NN33|CTU1_DROWI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|194170871|gb|EDW85772.1| GK22963 [Drosophila willistoni] Length = 343 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P I VA SGG DS L L +L+++ + +S+D + D + V Sbjct: 45 QLFQPGQKIAVAASGGKDSTVLAHVLK-LLNEKHNYGLDLVLLSIDEGISGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 +++ ++S++ ++ R + AK + I Sbjct: 104 KQNRDDYQMSLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLQVDSI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180 T H DD ETV M R + L D I +P +DI + Sbjct: 164 ATGHNADDIAETVLMNILRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYSYEKDIVMY 220 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 221 AHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|302920147|ref|XP_003053010.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256733950|gb|EEU47297.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 388 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 21/220 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I S + F R + + SGG DS L + ++ ++R + +SVD ++ Sbjct: 42 ITSSQLFFR----GERVAIGASGGKDSTVLASVMKTL-NERHDYGLDLVLLSVDEGIKGY 96 Query: 66 AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114 D + V + + +V + + G R + A Sbjct: 97 RDDSLETVKRNAVQYDMPLEIVGYGELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGA 156 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172 K + ++T H DD ETV M R + L+ + D N + R P Sbjct: 157 KKLAIKHVVTGHNADDIAETVLMNLLRGDLPR---LARSTSIVTGDSNSDVKRSKPLKYA 213 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R +++++ Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARGLIKNLE 253 >gi|313621001|gb|EFR92131.1| bifunctional protein TilS/hprT [Listeria innocua FSL S4-378] Length = 125 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LVAVSGG DS LL L S K + ++H LRE A+ E V C Sbjct: 20 SDDKLLVAVSGGPDSFALLHFL---WSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76 Query: 78 SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 I + V + K Q G+ AR RY + N + Sbjct: 77 EERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKL 125 >gi|330921640|ref|XP_003299506.1| hypothetical protein PTT_10510 [Pyrenophora teres f. teres 0-1] gi|311326790|gb|EFQ92397.1| hypothetical protein PTT_10510 [Pyrenophora teres f. teres 0-1] Length = 440 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 19/215 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FQRGEKVAIGASGGKDSTVLASVLKTL-NERYDYGLDLILLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +++ + G R + A + ++T Sbjct: 107 NAEQYGMELTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVRHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDI 177 H DD ETV M R + + N+ S+P ++I Sbjct: 167 GHNADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASANPASNTNIKRSKPLKYAYEKEI 226 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + +N+ + R R +++++ Sbjct: 227 VLYAHHKNLDYFSTECIYSPEAFRGSARALIKNLE 261 >gi|189192725|ref|XP_001932701.1| hypothetical protein PTRG_02368 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978265|gb|EDU44891.1| hypothetical protein PTRG_02368 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 440 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 19/215 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FQRGEKVAIGASGGKDSTVLASVLKTL-NERYDYGLDLILLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +++ + G R + A + ++T Sbjct: 107 NAEQYGMELTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVRHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDI 177 H DD ETV M R + + N+ S+P ++I Sbjct: 167 GHNADDVAETVLMNLLRGDLPRLSRTTSIVTSTPSASANPASNTNIKRSKPLKYAYEKEI 226 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + +N+ + R R +++++ Sbjct: 227 VLYAHHKNLDYFSTECIYSPEAFRGSARALIKNLE 261 >gi|318077182|ref|ZP_07984514.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actF] Length = 259 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 13/218 (5%) Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A+ A I+ HT DDQ ETV + R + LSGM + + RPF Sbjct: 45 LDAVAEKHGAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPF 100 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 LR R+ R + +++ +DP NTD + R R+R +L + + + Sbjct: 101 LRIDRQTARKACMVQSLPVWDDPHNTDPAYTRSRLRHEGLPALEKSLGKGVVEALARTAQ 160 Query: 230 VNNAVAMLIPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQISL 281 ++ A + + TV + + + + +LR + GG + Sbjct: 161 LSRDDADALDAWAARAAGTVRDEHGALDCAGLYALPAAVRRRVLRAALLDAGAPGGALFA 220 Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 ++R++ + G+R G+V R L I Sbjct: 221 AHIEEVDRLITAWR-GQRALNLPGKVEARRLGGRLVIR 257 >gi|219851846|ref|YP_002466278.1| PP-loop domain protein [Methanosphaerula palustris E1-9c] gi|219546105|gb|ACL16555.1| PP-loop domain protein [Methanosphaerula palustris E1-9c] Length = 304 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L I VA+SGG DS LL ++ +L R+ + AI+VD +R+ + + Sbjct: 44 LADNERIAVALSGGKDSTVLLWLMNMLLGKRAAD--RLVAITVDEGIRDYRDETLAAARR 101 Query: 76 VCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + RL I H +VS+++ + + R + + A A ++ T Sbjct: 102 LTHRLGIRHIIVSFQDLFGADLDSLLIGNRERACSVCGVYRRQALQQTAVEAGAGVLATG 161 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180 H DD+ ++V M R + G L + +I +P R +++ + Sbjct: 162 HCLDDEAQSVLMNYLRGDLTRIAG-------TLPEGTGYIPRIKPLGRVSEKEVVVY 211 >gi|322711128|gb|EFZ02702.1| VEG136 protein [Metarhizium anisopliae ARSEF 23] Length = 393 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 21/228 (9%) Query: 2 FLSPIE-SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 FLS E V + S L +P + + SGG DS L L ++ ++R + +S Sbjct: 29 FLSVFEDEVHHTITSSKLFFPGEKVAIGASGGKDSTVLASVLKTL-NERHNYGLDLVLLS 87 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREAR 106 +D ++ D + V + + +V + + G R Sbjct: 88 IDEGIKGYRDDSLETVKRNAVQYDMPLKIVGYDELFGWTMDQVVETIGKKGNCTYCGVFR 147 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 + A +N ++T H DD ETV M R + LS + + I Sbjct: 148 RQALDRGANLLNIKHVVTGHNADDIAETVLMNLLRGDLPR---LSRSTSIVTGSASTGIQ 204 Query: 167 R--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R P ++I + + + + R R ++ ++ Sbjct: 205 RSKPLKYAYEKEIVLYAHHKRLDYFSTECIYSPEAFRGTARTLIKSLE 252 >gi|46128203|ref|XP_388655.1| hypothetical protein FG08479.1 [Gibberella zeae PH-1] Length = 392 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 21/220 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I S + F R + + SGG DS L + ++ ++R + +SVD ++ Sbjct: 42 ITSSKLFFR----GERVAIGASGGKDSTVLASVMKTL-NERHDYGLDLVLLSVDEGIKGY 96 Query: 66 AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114 D + V + + +V + + G R + A Sbjct: 97 RDDSLETVKRNAVQYDMPLEIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGA 156 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172 K + ++T H DD ETV M R + LS + + + + R P Sbjct: 157 KKLAIQHVITGHNADDVAETVLMNLLRGDMPR---LSRSTSIVTGNSSSEVMRSKPLKYA 213 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R +++++ Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARGLIKNLE 253 >gi|253681020|ref|ZP_04861823.1| PP-loop family protein [Clostridium botulinum D str. 1873] gi|253562869|gb|EES92315.1| PP-loop family protein [Clostridium botulinum D str. 1873] Length = 245 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 27/238 (11%) Query: 1 MFLSPIESVRFFVR---------SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGK 50 M + E R F+R +++ P + V +SGG DS+ LL AL ++ S Sbjct: 1 MIIFKKEYNRLFLRYLRKSIEEYNMIKPGDKVAVGLSGGKDSIFLLFAL-RLIQMTSIKN 59 Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAARE 104 + I++D + + + C + I + N + + + + Sbjct: 60 FELIGINIDLGFETN----LAPLENFCIKNNIPIIIEKTNIADVVFNERKEKKPCSLCSK 115 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R + AK N I H DD +ET++M + + G + D + Sbjct: 116 LRKGALIRVAKANNINKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNINFN---DKGIN 171 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 I RP + R + I+ ++ N+ + D + R +++ + I L +Y ++ Sbjct: 172 IIRPLIYLREDLIQKLTIKYNLPVIKSSCPKDKKTTREDMKQLL--IKLENIYPDAQR 227 >gi|265762633|ref|ZP_06091201.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16] gi|263255241|gb|EEZ26587.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16] Length = 249 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 9/170 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV +SGG DS+ L+ L S + A+ V D Y+ + Sbjct: 31 GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88 Query: 79 RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + + V ++ + R + AK I H DD LET+ Sbjct: 89 KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 M +G + + ++ I RP D+ R Sbjct: 149 LMNIT----YQGAFSTMPPRLAMNKFDMTIIRPMCLVHEADLLELAQIRG 194 >gi|227834068|ref|YP_002835775.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] gi|227455084|gb|ACP33837.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] Length = 317 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 8 SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R R++V P I V +SGG+DS ++ + +A+ VDH L+E Sbjct: 17 ACRVAARAVVGEQPRAIAVGLSGGADS-------LALTAALLAEGHDVTALCVDHGLQEG 69 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + R ++ L V+ K + A + + + A Sbjct: 70 SAAQARRAAEQARALGAGAEVLRVDVGKQGSVEAEAR-------AARYRAFAPWGEVAVA 122 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ET+ + R ++GM + + + + RP L RR + + Sbjct: 123 HTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETACAELG 175 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD 210 + +DP N D F RV +RR + Sbjct: 176 LEVWQDPQNQDASFRRVALRREILP 200 >gi|327299008|ref|XP_003234197.1| PP-loop ATPase superfamily protein [Trichophyton rubrum CBS 118892] gi|326463091|gb|EGD88544.1| PP-loop ATPase superfamily protein [Trichophyton rubrum CBS 118892] Length = 427 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 V + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 48 FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106 Query: 76 VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + +VS + G R + A +N ++T Sbjct: 107 NAVQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + S T ++ S+P ++I + + Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAYHK 225 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++D++ Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|262183446|ref|ZP_06042867.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975] Length = 324 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%) Query: 8 SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + R R++V P I V +SGG+DS ++ + +A+ VDH L+E Sbjct: 24 ACRVAARAVVGEQPRAIAVGLSGGADS-------LALTAALLAEGHDVTALCVDHGLQEG 76 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + R ++ L V+ K + A + + + A Sbjct: 77 SAAQARRAAEQARALGAGAEVLRVDVGKQGSVEAEA-------RAARYRAFAPWGEVAVA 129 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DDQ ET+ + R ++GM + + + + RP L RR + + Sbjct: 130 HTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETACAELG 182 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD 210 + +DP N D F RV +RR + Sbjct: 183 LEVWQDPQNQDASFRRVALRREILP 207 >gi|322820903|gb|EFZ27387.1| hypothetical protein TCSYLVIO_6411 [Trypanosoma cruzi] Length = 329 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 16/203 (7%) Query: 23 LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +VA SGG DS L+ + +L++R ++ +S+D + D ++ V + Sbjct: 54 VVACGASGGKDSTVLMHLMK-LLNERHGYDVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112 Query: 81 RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + V+S+K R + A + AT I+T H D Sbjct: 113 GLPLRVISYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET+ M R + D + +P ++I + + + + Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230 Query: 190 EDPSNTDDRFERVRVRRFVRDID 212 + R R +++++ Sbjct: 231 TTECSYSREAFRSEARTLLKEME 253 >gi|255717669|ref|XP_002555115.1| KLTH0G01694p [Lachancea thermotolerans] gi|238936499|emb|CAR24678.1| KLTH0G01694p [Lachancea thermotolerans] Length = 373 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 19/209 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 Y + V SGG DS L L +L++R I+ +S+D + D + V Sbjct: 65 YGEKVAVGASGGKDSTVLAYVLK-LLNERYNYGIQIVLLSIDEGIVGYRDDSLATVKRNK 123 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + +VS++ T A R + A + ++T H Sbjct: 124 EQYGLPLEIVSYRELYDWTMDEIVACAGVRNSCTYCGVFRRQALDRGAAKLGIRHVVTGH 183 Query: 127 TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD ETV M R EK + + +PF +++I + Sbjct: 184 NADDMAETVLMNILRGDVARLEKSTAIMTQSSGSPIKRS----KPFKYSYQKEIVLYAHY 239 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 240 KKLDYFSTECTYAPEAFRGTARELMKNLE 268 >gi|218129888|ref|ZP_03458692.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697] gi|317476891|ref|ZP_07936134.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii 1_2_48FAA] gi|217987998|gb|EEC54323.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697] gi|316907066|gb|EFV28777.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii 1_2_48FAA] Length = 251 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 30/227 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L S + A+ V + + + V Y+ + Sbjct: 34 GDRILIGLSGGKDSLALVELLAR-RSRILKPRFSVIAVHVVMKN--IPYQSD--VDYLRN 88 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I + + ++ + R + AK I H DD L Sbjct: 89 YTESCGIPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQKCNKIALGHHMDDIL 148 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR------EDIRSFLLQRNI 186 ET+ M +G S ++ ++ I RP +IR++ Q Sbjct: 149 ETLLMNIT----YQGTFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAEIRAYRKQVKN 204 Query: 187 SWCEDPSNTDDRFERV---RVRRFVRDIDLHALYLKMKKFQDLRVKV 230 E S R R+ + +++ A Y +++ ++ Sbjct: 205 CPYESQS------SRSAMKRILHQLEEMNPEARYSLWGSMSNVQEEL 245 >gi|291528152|emb|CBK93738.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale M104/1] Length = 377 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 24/229 (10%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM L+ L L + + +D E R+V Sbjct: 132 ELVKPGDKIAVCISGGKDSM-LMAKLFQELKHHNKFDFDVKFLVMDPGYNEAN----RHV 186 Query: 74 -SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + C L I ++ + R + AK + I H + Sbjct: 187 IEENCRNLGIPATIFESDIFDAVYDIEKSPCYLCARMRRGHLYAFAKELGCNKIALGHHY 246 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ M + M + ++ + + RP R +DI+++ + + Sbjct: 247 DDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHF 303 Query: 189 CEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N ++R +RV +++ + ++ +++ F+ + Sbjct: 304 IQCACKFTDTCTTCNNEENRSKRVEIKQLIANLKKVNPFVEANIFKSVE 352 >gi|238923740|ref|YP_002937256.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] gi|238875415|gb|ACR75122.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale ATCC 33656] gi|291525722|emb|CBK91309.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Eubacterium rectale DSM 17629] Length = 377 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 24/229 (10%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM L+ L L + + +D E R+V Sbjct: 132 ELVKPGDKIAVCISGGKDSM-LMAKLFQELKHHNKFDFDVKFLVMDPGYNEAN----RHV 186 Query: 74 -SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + C L I ++ + R + AK + I H + Sbjct: 187 IEENCRNLGIPATIFESDIFDAVYDIEKSPCYLCARMRRGHLYAFAKELGCNKIALGHHY 246 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ M + M + ++ + + RP R +DI+++ + + Sbjct: 247 DDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHF 303 Query: 189 CEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N ++R +RV +++ + ++ +++ F+ + Sbjct: 304 IQCACKFTDTCTTCNNEENRSKRVEIKQLIANLKKVNPFVEANIFKSVE 352 >gi|77918285|ref|YP_356100.1| C32 tRNA thiolase [Pelobacter carbinolicus DSM 2380] gi|123574777|sp|Q3A6S7|TTCA_PELCD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|77544368|gb|ABA87930.1| ATPase, PP-loop superfamily [Pelobacter carbinolicus DSM 2380] Length = 259 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 11/207 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77 I VAVSGG DS LL L S+ R+ + + A++VD D ++ + Sbjct: 29 GDRIAVAVSGGKDSWTLLHILDSLRR-RAPIRYELIAVNVDPGFPGYRTDIMEAHLREYG 87 Query: 78 SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R+ + + + +P + A R ++ A + + H DD +ET Sbjct: 88 FANRMERTDCATIIKEKLRPGSSFCAFCARLRRGVLYSVATELGCNKLALGHHLDDFVET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + G + + + + RP + D+ +F + Sbjct: 148 LLLNQF----YVGTLAAMSPKLLADNGQHTVIRPMVYVEESDVAAFAEANGLPAIPCGCP 203 Query: 195 TDDRFERVRVR--RFVRDIDLHALYLK 219 + R ++ R R R V + +L+ Sbjct: 204 EETRSDQNRQRMKRLVSQLAEDIPHLR 230 >gi|320169122|gb|EFW46021.1| ATP-binding domain-containing protein 3 [Capsaspora owczarzaki ATCC 30864] Length = 400 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 22/214 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + V + + SGG DS L L + ++G I+ +SVD + D + V Sbjct: 46 KLFVPGDRVAIGASGGKDSTVLAYVLKRLNDMYNYG-IELFLLSVDEGITGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 I +VS++ R + A + A I Sbjct: 105 KRNEQAYGIPLKIVSYQELYGWTMDAIVKEVGLKNNCTFCGVFRRQALDRGAALLGANKI 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIR 178 +T H DD ETV+M R A + ++G DT+ +PF ++I Sbjct: 165 VTGHNADDMAETVFMNILRGDAPRLQRCTNVVTGSSDTLPR------CKPFKFTYEKEIV 218 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + + R R F++D++ Sbjct: 219 LYAYFQKLDYFSTECVYSPQAFRGHARAFLKDLE 252 >gi|118602588|ref|YP_903803.1| PP-loop domain-containing protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567527|gb|ABL02332.1| PP-loop domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 263 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 18/248 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + P+ + + IL+AVSGG DS+ L L L+ + +++D Sbjct: 25 LLVKPVGRAISDFKMIKERDKILLAVSGGKDSLSLFHILRHFLASAPIS-FELGVVTID- 82 Query: 61 CLRETAKD-EVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEH 113 E + + + + + S+ + S + + L+ + Sbjct: 83 ---PQVDGFEPQALKSFFKKFDVPYFFESFPIMKQAEKSMKGNSYCSFCARIKRGLMYQV 139 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ ++ DD E++ M + + M + D +L I RP R Sbjct: 140 ARREGYNVLALGQHLDDLAESLIMSICHNGKIQTMKAHYIND----AKDLRIIRPLAYVR 195 Query: 174 REDIRSFLLQRNISWCEDPSNT--DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 + +F + +D ERV + ++ + L ++ +N Sbjct: 196 ERQLANFAKTICLPVIKDSCPACYQMPTERVHFKHWLLTEEKRTPNLYKNLLSAMKPMLN 255 Query: 232 NAVAMLIP 239 A L Sbjct: 256 EAKECLND 263 >gi|294881990|ref|XP_002769552.1| hypothetical protein Pmar_PMAR006592 [Perkinsus marinus ATCC 50983] gi|239873104|gb|EER02270.1| hypothetical protein Pmar_PMAR006592 [Perkinsus marinus ATCC 50983] Length = 936 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 19/210 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +VR F + + ILV +SGG DS+ +L L ++ RS K A +VD E + Sbjct: 658 AVRDF-QMINEGDKILVGLSGGKDSLTMLHLLLAM-RKRSPVKFTVGAATVDPQTPEYS- 714 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSK--------PQTGLMAAAREARYALISEHAKTINA 119 + L + + +S + + L + + ++ + Sbjct: 715 --PEPLKRYMEALGVEYHFLSKPLIEMAKNSLDPKKPSLCSFCARMKRGMLYSCMREFGY 772 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + DD E+ M + + + + + + ++ + RP + CR + + Sbjct: 773 TSLALGQHLDDLAESFVMSAFHNGTLR----TMKANYFVQQGDIRVIRPLVYCREKQLAE 828 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 F + ++ D N F + R V+ Sbjct: 829 FATENSLPVISD--NCPACFATPKERHRVK 856 >gi|298504242|gb|ADI82965.1| tRNA (2-thio-C32)-thioltransferase [Geobacter sulfurreducens KN400] Length = 257 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75 I VAVSGG DS LL L + R+ K + A+++D R + Y+ + Sbjct: 29 GDRIAVAVSGGKDSYTLLHILEGLRR-RAPVKYELVAVTIDSGYPGFR--SDVIASYLRE 85 Query: 76 VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + H + + +P + + + ++ A+ + + H DD + Sbjct: 86 QGFAHHLETTDHYDIIREKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFV 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + G + + + + RP + +I F + Sbjct: 146 ETLLLNQF----FVGTLKAMAPRMLADNGETTVIRPLVYVEEREIIPFARENRFPVVCCS 201 Query: 193 SNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDL 226 + R R+++ + +++ +K + L Sbjct: 202 CPVCGTADLQRRRMKKLLTELEKENPAVKRSLLRAL 237 >gi|145591717|ref|YP_001153719.1| PP-loop domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283485|gb|ABP51067.1| PP-loop domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 332 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61 +E++R R +V ++ VAVSGG DS+ LL L S +K A +V+ Sbjct: 38 RKVLETIRR-ERLIVPGDYVAVAVSGGKDSLVLLHILGSFKERGLLRDVKMEAFTVNEGH 96 Query: 62 -----LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA----------- 105 R + +D YV ++ +R I ++V +K+ T + R A Sbjct: 97 PYSCFYRMSRRD---YVRELAARFGIEYNVYHFKDFFGVTAQELSERLAKAGHEVHMCTI 153 Query: 106 ----RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 R L++ + T I TAH DD+ +TV M + G+ + Sbjct: 154 DGVLRRRLMNVVGRRRGWTKIATAHNLDDEAQTVLMNVLMGNLSR-FAYYGVYEDAEEKD 212 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---TDDRFE 200 + +P R E++ + I E + R++ Sbjct: 213 LIPRIKPMKYIREEEVALYAYYHGIPLMELECPYVVANPRYD 254 >gi|326422516|gb|EGD71912.1| PP-loop domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 301 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 14/180 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS+ LL L + + +I++D ++ + + C Sbjct: 44 KGEKVAVANSGGKDSLSLLYILAKYFKKNN----EIVSITIDEGIKGYRDKTIEIMKRYC 99 Query: 78 SRLRIAHSVVSWKNSKPQTG----------LMAAAREARYALISEHAKTINATLIMTAHT 127 I + + S+K+ +T AA R LI+ AK A + TAH Sbjct: 100 DEYGIKYKIYSYKDLTGKTMDYIASLKKGIPCAACGVLRRYLINYAAKDNKADKLATAHN 159 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD+ E V M ++ EK L + + + +PF+ ++ + + I Sbjct: 160 LDDEAENVIMNLVQNDVEKMTRLGAYSGVVKEEEFIPRIKPFIFLGEKETMLYSMLNGID 219 >gi|242802619|ref|XP_002484007.1| PP-loop ATPase superfamily protein, putative [Talaromyces stipitatus ATCC 10500] gi|218717352|gb|EED16773.1| PP-loop ATPase superfamily protein, putative [Talaromyces stipitatus ATCC 10500] Length = 478 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 19/209 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L L ++ +G + +S+D ++ D + V Sbjct: 50 RGERIAIGASGGKDSTVLASVLKTLNVRYDYG-LDLVLLSIDEGIKGYRDDSLETVKRNA 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +V + G R + A + I+T H Sbjct: 109 KQYDMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHIVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD ETV M R +G + D+ ++ S+P ++I + Sbjct: 169 NADDVAETVMMNLLRGDLPRLSRGTSIVTGQDS----TDMKRSKPLKYAYEKEIVLYAHH 224 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 225 KKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|321462932|gb|EFX73952.1| hypothetical protein DAPPUDRAFT_200348 [Daphnia pulex] Length = 341 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 15/210 (7%) Query: 15 SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + P + + SGG DS L L + ++G +K +S+D + D + V Sbjct: 45 KMFQPGQLVAIGASGGKDSTVLAYVLKHLNEKYNYG-LKLVLLSIDEGITGYRDDSLESV 103 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 I +V+S+K+ + R + A + +I Sbjct: 104 KRNQEEYNIPLTVLSYKDLYGWTMDDIVKQVGRKNNCTFCGVFRRQALDRGAVLLKCDII 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ET+ M R + D +L +PF ++I + Sbjct: 164 ATGHNADDVAETILMNLLRGDIARLQ--RCTFHITGSDGSLPRVKPFKYAYEKEIVLYAY 221 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R V+D++ Sbjct: 222 FKKLDYFATECVYAPDAYRGHARALVKDLE 251 >gi|307354722|ref|YP_003895773.1| phosphoadenosine phosphosulfate reductase [Methanoplanus petrolearius DSM 11571] gi|307157955|gb|ADN37335.1| phosphoadenosine phosphosulfate reductase [Methanoplanus petrolearius DSM 11571] Length = 295 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++R + R + I VA+SGG DS LL L +R I AIS+D + Sbjct: 36 KAIRKY-RWISQGDRIAVAMSGGKDSSALLHFLAKTFGERR--DITIFAISIDEGICGY- 91 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAK 115 +++ V + R ++ VS+K++ T A++ R L+++ A+ Sbjct: 92 -RDMKPVEKIAERYGVSFHSVSFKDAYGFTLDEIVAKQGDRISCSRCGVLRRHLLNKTAR 150 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AT I DD+ ++V M + R AE + + + + RPF+ Sbjct: 151 ELGATKIALGFNLDDEAQSVLMNALRGDAETLV-----RRQVPREGFIPRIRPFIHLPER 205 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++ + L + E + R VR + + K Sbjct: 206 EVALYALLNVEGFIEAGCPYSKKALRADVREILNIYNYRHPAAK 249 >gi|195379938|ref|XP_002048729.1| GJ21203 [Drosophila virilis] gi|226711422|sp|B4LM02|CTU1_DROVI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|194143526|gb|EDW59922.1| GJ21203 [Drosophila virilis] Length = 343 Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R + +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + ++ +P ++I + + + Sbjct: 168 NADDIAETVLMNILRGDTARLRRCTDI-RTGGSEDSIPRVKPLKYSYEKEIVMYAHYKKL 226 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 227 VYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|284098925|ref|ZP_06385979.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3] gi|283830413|gb|EFC34619.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3] Length = 158 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + HT DDQ ETV + R GLSGM + RPFL+ R +I Sbjct: 12 GAAKVAVGHTQDDQAETVLLSMMRGSGL--AGLSGMPARREP----CVIRPFLQVSRSEI 65 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 +L +R+ + D SN + ++ R R+RR V + Sbjct: 66 LQYLDERHCGFRVDSSNENPKYARNRLRREVIPL 99 >gi|315919673|ref|ZP_07915913.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693548|gb|EFS30383.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 248 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELATLRH 194 >gi|260171362|ref|ZP_05757774.1| hypothetical protein BacD2_05800 [Bacteroides sp. D2] Length = 255 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 38 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 92 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 93 HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 152 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 153 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELATLRH 201 >gi|212724116|ref|NP_001132208.1| hypothetical protein LOC100193637 [Zea mays] gi|194693758|gb|ACF80963.1| unknown [Zea mays] Length = 364 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L + ++G + +SVD + D + V Sbjct: 65 AGERVAIGASGGKDSTVLAYVLSELNRQHNYG-LDLFLLSVDEGITGYRDDSLETVKRNE 123 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +VS+K+ + R + A + A I+T H Sbjct: 124 IQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKADKIVTGH 183 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV + R + + + T D + +PF ++I + + + Sbjct: 184 NADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAYFKKL 241 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 242 DYFSTECIYSPNAYRGFAREFIKDLE 267 >gi|225459814|ref|XP_002285915.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 356 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 70/212 (33%), Gaps = 19/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P I + SGG DS L L + + R + +SVD + D + V Sbjct: 56 QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + VVS+K+ R + A + + Sbjct: 115 KRNEIQYGLPLKVVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAMLKVDKL 174 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 T H DD ETV + R + C +I+ + I R PF ++I + Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS----RCTSIITGEDGPIPRCKPFKYTYEKEIVMY 230 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 231 AYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 262 >gi|212540204|ref|XP_002150257.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei ATCC 18224] gi|210067556|gb|EEA21648.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei ATCC 18224] Length = 419 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 19/209 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L + ++ ++R + +S+D ++ D + V Sbjct: 50 RGERIAIGASGGKDSTVLASVMKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLETVKRNA 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +V + G R + A + I+T H Sbjct: 109 EQYEMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHIVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD ETV M R +G + D+ ++ S+P ++I + Sbjct: 169 NADDVAETVMMNLLRGDLPRLSRGTSIVTGQDS----TDMKRSKPLKYAYEKEIVLYAHH 224 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 225 KKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|42523537|ref|NP_968917.1| hypothetical protein Bd2064 [Bdellovibrio bacteriovorus HD100] gi|81617210|sp|Q6MLE7|TTCA_BDEBA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|39575743|emb|CAE79910.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 259 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 19/205 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS LL L + RS K + A +D ++ +V Sbjct: 32 GDKVMVCVSGGKDSSVLLALLTEIQR-RSERKFQIEAAILD---QKQPGFDVSKFKVWVE 87 Query: 79 RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + +V K + R A++ + A T + H DD + Sbjct: 88 SLGVPFHIVEKDTYSIVKEKVQGGTFCSLCSRLRRAILYDFAHANGFTKLALGHHRDDVV 147 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T + G + D + RP DI + P Sbjct: 148 HTALLNMF----YVGTTAAMPPKLKSDDERNILVRPLCYVSERDIEELAAEWAFPVI--P 201 Query: 193 SNT---DDRFERVRVRRFVRDIDLH 214 N D +R R+++ VRD++ Sbjct: 202 CNLCGSQDGLKRQRIKKLVRDLEKE 226 >gi|194753600|ref|XP_001959100.1| GF12710 [Drosophila ananassae] gi|226711416|sp|B3MI77|CTU1_DROAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|190620398|gb|EDV35922.1| GF12710 [Drosophila ananassae] Length = 343 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R + +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ ++ R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184 DD ETV M R + L D I +P ++I + + Sbjct: 168 NADDIAETVLMNILRGDTAR---LRRCTDIKTGGGEDSIPRVKPLKYSYEKEIVMYAHYK 224 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|289755752|ref|ZP_06515130.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054] gi|289696339|gb|EFD63768.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054] Length = 323 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%) Query: 7 ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + F R L V +SGG DS+ L + +A+ VDH L+ Sbjct: 12 AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 63 Query: 66 AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + L + V+ + AA + + ++ Sbjct: 64 SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV + R + + YD RP L RR + + Sbjct: 119 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 ++ +DP NTD RF R R+R V + AL ++ ++ A Sbjct: 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEEVLGGGVAEALARTATALREDTDLIDTIAAQ 231 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294 +P R + + + + ++R + GG L R ++R++ Sbjct: 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 290 Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321 + + R+V RR L + R Sbjct: 291 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 321 >gi|289192268|ref|YP_003458209.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22] gi|288938718|gb|ADC69473.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22] Length = 311 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 27/223 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSDVC 77 I + VSGG DS+ + L + + K VD + RE AK YV + C Sbjct: 47 KIGIGVSGGKDSLVMAYILKKLFE--NIPNSKLICFFVDEGIKGFREKAK---EYVKEFC 101 Query: 78 SRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATL 121 + ++ +++ T + R L++++A Sbjct: 102 EEHNLDLKIIKFEDEIGYTLDEIIKNNYLSKLNIGKPCSFCGVVRRYLLNKYALKEGCDY 161 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + H DD +T+ M + + + + +P +++R + Sbjct: 162 LAIGHNLDDFCQTILMNYIEGNIKN---IVQFGKEFEGEGFVKRIKPLKLIPEDEVRLYA 218 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 NI + +P R R+++ + ++ +K + Sbjct: 219 EINNIRYQREPCPYSSLSYRHRMKKIIEILEKEKPGVKFSILR 261 >gi|303244455|ref|ZP_07330790.1| PP-loop domain protein [Methanothermococcus okinawensis IH1] gi|302485153|gb|EFL48082.1| PP-loop domain protein [Methanothermococcus okinawensis IH1] Length = 330 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 44/228 (19%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRETAKD--EVRY 72 I+V +SGG DS+ LL L R I+ AI++D +R + D + Sbjct: 74 PKDKIIVGLSGGKDSLALLHLL---EPYRRRYGIEIYAITIDLNINGIRPWSSDNKNMAS 130 Query: 73 VSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAR-----EARYALISEHAKTIN 118 + C L I H ++ + S+ G+ + RY L + K + Sbjct: 131 IKKHCENLNIPHKIIGFDKDVVEMSKILSENTKGIEYSPCFSCSVVRRYILTNFAMKLLE 190 Query: 119 AT---------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------L 161 I HT +D +T+ + K + + ++D Sbjct: 191 VNTNNIDINKIKICLGHTLEDNSDTILANILKGDVIKTLEPLKNFEEAVFDFKEFKLKLQ 250 Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRR 206 I RP L ++I L + +IS+ D + + R + +R+ Sbjct: 251 KSTIIRPLLSVSEKEIIKALNECSISYYRDK--DECPYSRDKGDSIRK 296 >gi|15610761|ref|NP_218142.1| cell cycle protein MESJ [Mycobacterium tuberculosis H37Rv] gi|15843237|ref|NP_338274.1| hypothetical protein MT3727 [Mycobacterium tuberculosis CDC1551] gi|31794795|ref|NP_857288.1| cell cycle protein MESJ [Mycobacterium bovis AF2122/97] gi|121639538|ref|YP_979762.1| putative cell cycle protein mesJ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663488|ref|YP_001285011.1| putative cell cycle protein MesJ [Mycobacterium tuberculosis H37Ra] gi|148824829|ref|YP_001289583.1| cell cycle protein mesJ [Mycobacterium tuberculosis F11] gi|167968544|ref|ZP_02550821.1| cell cycle protein mesJ [Mycobacterium tuberculosis H37Ra] gi|215413545|ref|ZP_03422217.1| cell cycle protein mesJ [Mycobacterium tuberculosis 94_M4241A] gi|215424866|ref|ZP_03422785.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92] gi|215447962|ref|ZP_03434714.1| cell cycle protein mesJ [Mycobacterium tuberculosis T85] gi|224992035|ref|YP_002646724.1| putative cell cycle protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800663|ref|YP_003033664.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 1435] gi|254233123|ref|ZP_04926449.1| cell cycle protein mesJ [Mycobacterium tuberculosis C] gi|254366177|ref|ZP_04982221.1| cell cycle protein mesJ [Mycobacterium tuberculosis str. Haarlem] gi|254552737|ref|ZP_05143184.1| cell cycle protein mesJ [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184542|ref|ZP_05762016.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A] gi|260202808|ref|ZP_05770299.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85] gi|289445218|ref|ZP_06434962.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A] gi|289555884|ref|ZP_06445094.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 605] gi|289571861|ref|ZP_06452088.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17] gi|289572272|ref|ZP_06452499.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85] gi|289747461|ref|ZP_06506839.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Mycobacterium tuberculosis 02_1987] gi|289748139|ref|ZP_06507517.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92] gi|289759783|ref|ZP_06519161.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis T85] gi|289763801|ref|ZP_06523179.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503] gi|294995465|ref|ZP_06801156.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis 210] gi|297636297|ref|ZP_06954077.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis KZN 4207] gi|297733291|ref|ZP_06962409.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis KZN R506] gi|298527101|ref|ZP_07014510.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis 94_M4241A] gi|306777978|ref|ZP_07416315.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu001] gi|306786531|ref|ZP_07424853.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu003] gi|306790898|ref|ZP_07429220.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu004] gi|306791218|ref|ZP_07429520.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu005] gi|306796004|ref|ZP_07434306.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu006] gi|306801251|ref|ZP_07437919.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu008] gi|306805465|ref|ZP_07442133.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu007] gi|306974096|ref|ZP_07486757.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu010] gi|307081804|ref|ZP_07490974.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu011] gi|308378388|ref|ZP_07668734.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu009] gi|313660622|ref|ZP_07817502.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis KZN V2475] gi|54039902|sp|P67152|TILS_MYCBO RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54042637|sp|P67151|TILS_MYCTU RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|2105069|emb|CAB08823.1| POSSIBLE CELL CYCLE PROTEIN MESJ [Mycobacterium tuberculosis H37Rv] gi|13883593|gb|AAK48088.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|31620392|emb|CAD95835.1| POSSIBLE CELL CYCLE PROTEIN MESJ [Mycobacterium bovis AF2122/97] gi|121495186|emb|CAL73672.1| Possible cell cycle protein mesJ [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602916|gb|EAY61191.1| cell cycle protein mesJ [Mycobacterium tuberculosis C] gi|134151689|gb|EBA43734.1| cell cycle protein mesJ [Mycobacterium tuberculosis str. Haarlem] gi|148507640|gb|ABQ75449.1| putative cell cycle protein MesJ [Mycobacterium tuberculosis H37Ra] gi|148723356|gb|ABR07981.1| cell cycle protein mesJ [Mycobacterium tuberculosis F11] gi|224775150|dbj|BAH27956.1| putative cell cycle protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253322166|gb|ACT26769.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 1435] gi|289418176|gb|EFD15377.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A] gi|289440516|gb|EFD23009.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 605] gi|289536703|gb|EFD41281.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85] gi|289545615|gb|EFD49263.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17] gi|289687989|gb|EFD55477.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Mycobacterium tuberculosis 02_1987] gi|289688726|gb|EFD56155.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92] gi|289711307|gb|EFD75323.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503] gi|289715347|gb|EFD79359.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis T85] gi|298496895|gb|EFI32189.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis 94_M4241A] gi|308213692|gb|EFO73091.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu001] gi|308328855|gb|EFP17706.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu003] gi|308332696|gb|EFP21547.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu004] gi|308340189|gb|EFP29040.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu005] gi|308343476|gb|EFP32327.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu006] gi|308347974|gb|EFP36825.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu007] gi|308351916|gb|EFP40767.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu008] gi|308352675|gb|EFP41526.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu009] gi|308356550|gb|EFP45401.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu010] gi|308360508|gb|EFP49359.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu011] gi|323717675|gb|EGB26876.1| cell cycle protein mesJ [Mycobacterium tuberculosis CDC1551A] gi|326905460|gb|EGE52393.1| cell cycle protein mesJ [Mycobacterium tuberculosis W-148] gi|328460393|gb|AEB05816.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 4207] Length = 323 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%) Query: 7 ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + F R L V +SGG DS+ L + +A+ VDH L+ Sbjct: 12 AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 63 Query: 66 AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + L + V+ + AA + + ++ Sbjct: 64 SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 118 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV + R + + YD RP L RR + + Sbjct: 119 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 171 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 ++ +DP NTD RF R R+R V + AL ++ ++ A Sbjct: 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 231 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294 +P R + + + + ++R + GG L R ++R++ Sbjct: 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 290 Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321 + + R+V RR L + R Sbjct: 291 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 321 >gi|224146018|ref|XP_002336280.1| predicted protein [Populus trichocarpa] gi|222833681|gb|EEE72158.1| predicted protein [Populus trichocarpa] Length = 314 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 11/208 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77 ILV VSGG DS LL L + R+ + + ++VD D ++ + Sbjct: 88 GDRILVGVSGGKDSYTLLHILDRLRR-RAPIRYELVPVTVDSGYPGFRTDLIAEHLREHG 146 Query: 78 SRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 R+ H+ + + +P + A R ++ A + + H DD +ET Sbjct: 147 FADRVEHTDCYRIITEKRRPGSSFCAFCARLRRGVLYSVADELGCNKLALGHHLDDVIET 206 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + G + + + + RP + DI F Q Sbjct: 207 LLLNQF----YIGTLGAMSPKLLADNGRHTVIRPLVYVPEADIIEFARQNAFPLVCCSCP 262 Query: 195 TDDRFE--RVRVRRFVRDIDLHALYLKM 220 R + R R+++ + D+ + +++ Sbjct: 263 AHARQDQKRQRMKKLISDLSIEIPHIRQ 290 >gi|309361541|emb|CAP29374.2| hypothetical protein CBG_09825 [Caenorhabditis briggsae AF16] Length = 1092 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 87/231 (37%), Gaps = 30/231 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57 M+ + + ++ + +LV +SGG DS+ LL L + + + AI+ Sbjct: 835 MYKKVTDVIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFQLGAIT 893 Query: 58 VDHCLRETAKDEVRY----VSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARY 107 VD + + + + C +L I + ++ P + A + Sbjct: 894 VD----PGS---AEFNPRPLIEYCRKLNIDYFYEEQDIIGAAMKTPGLRSICAFCSRMKR 946 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 ++ A+ ++ DD E+ ++ + ++ G + D L + R Sbjct: 947 GRLAAAAQFHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDNQLRVIR 1002 Query: 168 PFLRCRREDIRSFLLQR---NISWC--EDPSNTDDRFERVRVRRFVRDIDL 213 P + R + +R+F ++ + P+ + ER R+++ + +L Sbjct: 1003 PLIMVREKALRNFAEEKMFSELPVVAENCPACFNQATERHRIKQLLAQQEL 1053 >gi|237713442|ref|ZP_04543923.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407229|ref|ZP_06083777.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22] gi|294647335|ref|ZP_06724928.1| PP-loop family protein [Bacteroides ovatus SD CC 2a] gi|294809044|ref|ZP_06767766.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b] gi|229446424|gb|EEO52215.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354037|gb|EEZ03129.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22] gi|292637294|gb|EFF55719.1| PP-loop family protein [Bacteroides ovatus SD CC 2a] gi|294443769|gb|EFG12514.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b] Length = 248 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|153951034|ref|YP_001397372.1| PP-loop family protein [Campylobacter jejuni subsp. doylei 269.97] gi|152938480|gb|ABS43221.1| PP-loop family protein [Campylobacter jejuni subsp. doylei 269.97] Length = 253 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +L+ +SGG DS+ L L+ + + F K + A++ L ++ + C Sbjct: 25 GDRVLLGLSGGKDSLALAHLLNRMQAHVPF-KFELEAVT----LSYGMGEDYSGLHAHCE 79 Query: 79 RLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I HSV+ S + + + R + +A + AH DD Sbjct: 80 EHDIKHSVLDSNIYEMSGDTIRENSSFCSYFSRMRRGTLYTYALEKGFNKLAIAHHLDDA 139 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 E+ +M + A L + + + RP + R +R+ Q +S Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRNNATQNELSVI 192 >gi|281204433|gb|EFA78628.1| Aminotransferase [Polysphondylium pallidum PN500] Length = 1137 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 20/181 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78 ILV VSGG DS+ L+ +L + RS K +A +VD + D + + + Sbjct: 885 DKILVGVSGGKDSLTLIHSLIDIRR-RSKAKFTIAACTVD----PQSDDYDPSPLKRYFA 939 Query: 79 RLRIAHSVVS----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 L I + VS K + + A R ++ + N T + Sbjct: 940 SLDIPYFYVSQAVMDAAKVCMKEGSSRASICAFCSRMRRGILYNVCRQNNFTTLALGQHL 999 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD E+ M + + M ++ M + ++ I RP R R + + Sbjct: 1000 DDLSESFVMSAFYNGKLSSMKVNYMNEQ----GDIRIIRPLCNLRESQTRQYARLMALPV 1055 Query: 189 C 189 Sbjct: 1056 I 1056 >gi|170588925|ref|XP_001899224.1| n-type ATP pyrophosphatase-like [Brugia malayi] gi|158593437|gb|EDP32032.1| n-type ATP pyrophosphatase-like, putative [Brugia malayi] Length = 348 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 18/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L+ L+ + +G + +SVD + D ++ V Sbjct: 47 KGKKIAIGASGGKDSTVLIHVLNKLNQKHDYG-LDIILLSVDEGIAGYRGDSLKAVERNR 105 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + V+S+K + R + A A +I T H Sbjct: 106 NDYGLPLVVMSYKQLYGWTMDEIVSAVGARNNCTFCGVFRRRALDRGAIECGAHIIATGH 165 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV + R + C I+ L + R P +DI + Sbjct: 166 NADDMAETVLLNVLRGDLAR----LQRCTEIVTGLEGCLPRTKPLKYVFEKDIVMYAHFN 221 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R VR +VR ++ Sbjct: 222 RLDYFSTECRYAPDSFRNYVRMYVRKLE 249 >gi|15679734|ref|NP_276852.1| hypothetical protein MTH1742 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622874|gb|AAB86212.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 270 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +LV +SGG DS+ ++ L + R I+ A+++D + +D VR +C Sbjct: 12 RGDRVLVGLSGGKDSVMVIDILDEL---RERNIIELEAVTIDEGIGGYREDGVRIARKIC 68 Query: 78 SRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + I H VVS ++ P R +++ A+ AT I T H Sbjct: 69 ADRGIPHRVVSLEDYAGITLDEIMKNPSRSACTYCGVFRRWILNREARKSKATKIATGHN 128 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD+ + + M E + M + + +P +++ ++L R + Sbjct: 129 LDDETQAIVMNYLEGNLENLTRIGPMTSSAG-GRFIPKIKPLREIPEKEVALYVLARGLD 187 >gi|119189797|ref|XP_001245505.1| hypothetical protein CIMG_04946 [Coccidioides immitis RS] Length = 1673 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS + G R + A + + Sbjct: 105 KRNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T + S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +N+ + R R ++D++ Sbjct: 224 HKNLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|297705651|ref|XP_002829685.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Pongo abelii] Length = 348 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256 >gi|254571793|ref|XP_002493006.1| Protein required for thiolation of the uridine at the wobble position of Gln, Lys, and Glu tRNAs [Pichia pastoris GS115] gi|238032804|emb|CAY70827.1| Protein required for thiolation of the uridine at the wobble position of Gln, Lys, and Glu tRNAs [Pichia pastoris GS115] gi|328352982|emb|CCA39380.1| hypothetical protein PP7435_Chr3-0418 [Pichia pastoris CBS 7435] Length = 362 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 99/310 (31%), Gaps = 35/310 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++ ++R ++ +S+D + D + V Sbjct: 53 KGERVAIGASGGKDSTVLAHILKTL-NERYDYGLELVLLSIDEGIVGYRDDSLATVKRNK 111 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ +VS+K R + A + ++T H Sbjct: 112 EQYQMPLEIVSYKELYSWSMDEIVACAGIRSSCTYCGVLRRQALDRGAARLGIAHVVTGH 171 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + S+PF ++I + + + Sbjct: 172 NADDMAETVLMNLLRGDVNRLESSTNII-TQSSGSPIKRSKPFKYTYEKEIVLYAHYKKL 230 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLH---------------ALYLKMKKFQDLRVKVN 231 + R R ++ ++ L K ++ ++ Sbjct: 231 DYFSTECTYAPEAFRGTARTLLKSLEAIKPSCIIDIIQSGENFKLKPKKQRKNVVKRNTA 290 Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL-------RVSAAICGGQISLPGY 284 + + ++++ S L+ + +L R I GG I++ G Sbjct: 291 QEIEVRGDGSVSLNKDGNKCESCGYLSTNKICKACILLKGLESSRAKVPIEGGNIAIDGA 350 Query: 285 RSMERVMLFL 294 + + + L Sbjct: 351 AQVTKKLETL 360 >gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jostii RHA1] gi|123144654|sp|Q0S8E7|TILS_RHOSR RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|110820905|gb|ABG96189.1| possible cell cycle protein [Rhodococcus jostii RHA1] Length = 325 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 64/280 (22%), Positives = 102/280 (36%), Gaps = 21/280 (7%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +VR ++ + I VA+SGG ++ + + A+ VDH L Sbjct: 10 LEVRHAVRRWIAAHAPDGEIAVALSGG-------ADSLALTAAAAAEARSVCALVVDHRL 62 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + D + L A + V + GL AAAR+ARY + + Sbjct: 63 QPGSADVADEAAARARALGCASAEVLPVDVTGSGGLEAAARQARYRALDSAR---GTRPV 119 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + HT DDQ ETV + R G + GM + RP L RR R Sbjct: 120 LLGHTLDDQAETVLLGLSRGSG--GRSIWGMSAY-----DTPWGRPLLDVRRALTRQACA 172 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKY 241 + +S EDP N F RVR+R V + L + + A+L Sbjct: 173 ELGLSPHEDPHNASPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAMA 232 Query: 242 LTVHMRSII--AISQDILNID-STLLFYLLRVSAAICGGQ 278 ++++ I +L + + +LR G + Sbjct: 233 ADAQAKAVVEGEIDTALLALSAPPVRRRVLRSWLLAAGAR 272 >gi|118444965|ref|YP_878932.1| hypothetical protein NT01CX_0461 [Clostridium novyi NT] gi|118135421|gb|ABK62465.1| conserved hypothetical protein [Clostridium novyi NT] Length = 245 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 31/231 (13%) Query: 10 RFFVRSLV----------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 R F+R L + V +SGG DS+ LL AL ++ S + I++D Sbjct: 10 RQFLRYLRKSIEEYNMISPGDKVAVGLSGGKDSIFLLFALK-LIQLTSIKDFELVGINID 68 Query: 60 HCLRETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALIS 111 E+ + D C+ I V + + + + + R + Sbjct: 69 LGF------ELNISPLVDFCNNNNIPIIVETTNIAEVVFEDRKEKKPCSLCSKLRKGALI 122 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ N I H DD +ET++M + + G + D ++ I RP + Sbjct: 123 RVARANNMNKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNIH---FDDKDISIIRPLIY 178 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 R + I + + + P D + R ++ + I L +Y ++ Sbjct: 179 LREDLIEKLTEKYELPVIKSPCPMDKKTTREDMKNLL--ISLEKIYPDAQR 227 >gi|294495611|ref|YP_003542104.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] gi|292666610|gb|ADE36459.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219] Length = 255 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 20/201 (9%) Query: 2 FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 F +E VR + ++ HI VA+SGG DS LL L +L + F +K +AI+ Sbjct: 29 FCEMVEKKVRAHIEDQNLILNNEHIAVALSGGKDSSVLLYILAKILPE--FEGVKLTAIT 86 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARY 107 VD + ++ + Y ++ + L I H +VS++ K R Sbjct: 87 VDEGIPNYREETLTYAQELATFLNIEHRIVSFRENFGAPLPDLLKKRNVSACTLCGVLRR 146 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 ++ + +++ + T H+ DD+ ET M + + +L I + Sbjct: 147 KILEQETFSMDVPKLATGHSLDDEAETAMMNILTANID---AIINTASPNSGKESLRI-K 202 Query: 168 PFLRCRREDIRSFLLQRNISW 188 P +I + + + I Sbjct: 203 PLSVLNEHEIALYGILKGIFH 223 >gi|160931446|ref|ZP_02078842.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753] gi|156869511|gb|EDO62883.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753] Length = 269 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 22/238 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVD- 59 L P+ + + I V VSGG DS+ + L ++ + R F + + +A++ D Sbjct: 35 LGPMRAAVEKYHMIGEGDRIAVGVSGGKDSL---VLLCALAALREFYPSRFEVAALTADP 91 Query: 60 --HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALIS 111 H + + ++C RL + + + + + + + R ++ Sbjct: 92 QFHG----EPADYSQIEELCRRLGVPYHIRRTQLGRIIFEDRKEANPCSLCARMRRGILH 147 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 AK + H +DD +ET +M + + L LW+ RP + Sbjct: 148 NMAKEAGCNKLALGHHYDDAVETFFMNLFNSGSLD----CFSPKSYLSRKELWLIRPLVF 203 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 C + + + ++ + D R + + + ++ LK K + Sbjct: 204 CGERQVAAAANRCHLPVVKSECPADGSTSRQKTKELIARLEKDYPDLKSKVMGAVERA 261 >gi|17540090|ref|NP_499865.1| hypothetical protein F29C4.6 [Caenorhabditis elegans] gi|74960582|sp|O76365|CTU1_CAEEL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1; AltName: Full=Thiolation of uridine in tRNA protein 1 gi|3193157|gb|AAC19193.1| Hypothetical protein F29C4.6 [Caenorhabditis elegans] Length = 373 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + ++ +DR + +S+D ++ D + V Sbjct: 56 RGERVAIGASGGKDSTVLAYVMKTL-NDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNR 114 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++S+++ + R + A I AT ++T H Sbjct: 115 VEYGLPLTILSYRDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVTGH 174 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ET+ M R + + + + +L ++P C DI + + Sbjct: 175 NADDMAETLLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARTNQL 232 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R++VRD++ Sbjct: 233 EYFYTECIYAPNAYRGYARKYVRDLE 258 >gi|296415350|ref|XP_002837353.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633217|emb|CAZ81544.1| unnamed protein product [Tuber melanosporum] Length = 352 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + I + SGG DS L L ++ ++R ++F +S+D ++ D + V Sbjct: 57 KGSRIAIGASGGKDSTVLASVLKTL-NERYDYGVEFVLLSIDEGIKGYRDDSLETVKRNA 115 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +VS++ S + G R + A+ + ++T H Sbjct: 116 IQYGMELVIVSYEELYGWSMDSVVESIGKKGNCTYCGVFRRQALDRGAERLGIHHVVTGH 175 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + L I + I+R P ++I + L + Sbjct: 176 NADDIAETVLMNLLRGDLPR---LHRCTSIITSSTSSPIARSKPLKYAYEKEIVLYALHK 232 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++ ++ Sbjct: 233 KLDYFSTECIYSPEAFRGSARTLIKALE 260 >gi|323447395|gb|EGB03318.1| hypothetical protein AURANDRAFT_68117 [Aureococcus anophagefferens] Length = 492 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 19/215 (8%) Query: 53 FSAISVDHCLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111 S ++ DH R + + +V+ + R + + +W +S + M R Sbjct: 117 VSVLNFDHRQRGEISSCDTLFVAALARRFGLECTAHNWVHSSTHSSQMEFRAWRRTTSFK 176 Query: 112 ------EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 + + AH DDQ+E+ +R R L+ + + Sbjct: 177 TAFNVVDALIPQRCGHVALAHHADDQMESFLLRLARGSR-----LTNVFKGVASQAAPCF 231 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFVRDIDLH------ALYL 218 RP L + D+ ++L SW ED +NTD + R R V L+ Sbjct: 232 VRPLLFATKHDLVTYLDADGESWREDTTNTDTTHYVRNLSRLTVLPPLRTLCGGSLQLHT 291 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++K Q V+ ++L+ R+ A+S Sbjct: 292 RLKALQYQAQFFEAWVSHAADEWLSYSTRADGAVS 326 >gi|297842365|ref|XP_002889064.1| hypothetical protein ARALYDRAFT_476769 [Arabidopsis lyrata subsp. lyrata] gi|297334905|gb|EFH65323.1| hypothetical protein ARALYDRAFT_476769 [Arabidopsis lyrata subsp. lyrata] Length = 331 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 14/224 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +SVD Sbjct: 20 FEEEIHQVIVGNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEG 78 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 79 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 138 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 139 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 196 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 ++I + + + + R R F++D++ Sbjct: 197 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERP 240 >gi|255011863|ref|ZP_05283989.1| hypothetical protein Bfra3_22183 [Bacteroides fragilis 3_1_12] gi|313149698|ref|ZP_07811891.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138465|gb|EFR55825.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 249 Score = 103 bits (258), Expect = 5e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 +LV +SGG DS+ L+ L S + A+ V + + + + Y+ Sbjct: 31 GDKVLVGLSGGKDSLALVELLGK-RSRIFKPRFSVVAVHVVMKN--IPYQSDLD--YLRA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + V ++ + R + AK I H DD L Sbjct: 86 HAESYGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLELAQIRG 194 >gi|294934126|ref|XP_002780992.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983] gi|239891163|gb|EER12787.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983] Length = 733 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 29/245 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++++SGG DSM L L + F K A + H R+ A E+++V+ V + Sbjct: 254 PKVLVLSLSGGVDSMTHLYLLSKLQQPLGF---KLVACHIRHSNRDDAIQELQWVTYVTA 310 Query: 79 RLRIAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINAT--------- 120 RL + K +P L R+ R+++ ++ K A Sbjct: 311 RLGVPLYHHHVKLRRPHGSLKTGISRMDYEKQTRDIRFSMYAKAHKLAWAAAGLPEEERT 370 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRP-FLRCRRE 175 +++ H DD E + G+ + D + RP L R+E Sbjct: 371 QPVVVVGHHMDDVDENRLAELGKGNLLNINGMVINAEGDGDDEIGGVCQVRPLLLSTRKE 430 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 ++ + + NI + D + R R +R V D+ A K F + + Sbjct: 431 ELIACAARHNIPYMVDSTPKWSR--RGWIR-GVLDLGFPADGEARKSFLQDLTEAGDLSD 487 Query: 236 MLIPK 240 +L + Sbjct: 488 VLDQQ 492 >gi|189467530|ref|ZP_03016315.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM 17393] gi|189435794|gb|EDV04779.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM 17393] Length = 251 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 42/245 (17%) Query: 10 RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DH 60 + F + LV IL+ +SGG DS+ L+ L + + A+ V + Sbjct: 16 KRFSKGLVEYGLIEDGDKILIGLSGGKDSLALVELLAR-RARIFKPRFAVVAVHVVMKN- 73 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTI 117 + + + Y+ D I + + ++ + R + AK Sbjct: 74 -IPYQSD--LTYLRDYVESWGIPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQ 130 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H DD LET+ M +G S ++ ++ I RP D+ Sbjct: 131 GCNKIALGHHMDDILETLLMNIT----FQGAFSSMPPRLVMKKFDMTIIRPMCLVHEVDL 186 Query: 178 RSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 R S SN D + + ++ A Y + Sbjct: 187 LELAQIRGYRKQVKNCPYEAQSHR---SNMKD------ILHQLEAMNPEARYSLWGSMAN 237 Query: 226 LRVKV 230 ++ ++ Sbjct: 238 VQEEL 242 >gi|153807738|ref|ZP_01960406.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185] gi|149129347|gb|EDM20561.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185] Length = 248 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 15/172 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGKRVRIYK-PRFSVVAVHVVMKN--IPYQSD--TAYLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 ET+ M +G + ++ ++ I RP D+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALH 193 >gi|237722675|ref|ZP_04553156.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229448485|gb|EEO54276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 248 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RAHIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|328767927|gb|EGF77975.1| hypothetical protein BATDEDRAFT_17572 [Batrachochytrium dendrobatidis JAM81] Length = 332 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + +A SGG DS L L +L+ R + +S+D + D + V Sbjct: 32 ALFKPGDRVAIAASGGKDSTVLAHVLC-ILNKRYNYGLDLCLLSIDEGITGYRDDSLETV 90 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + I ++S+++ R + A + + Sbjct: 91 KRNEQQYGIPLKILSYQDLYGWTMDAIVKQIGLKNNCTFCGVFRRQALDRGAALLKVDHV 150 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + C +I N I R PF ++I + Sbjct: 151 VTGHNADDIAETVLMNFLRGDLAR----LQRCTSIKTATNEVIPRSKPFKYTYEKEIVMY 206 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 207 AYFKKLDYFSTECIYSPNAYRGYARAFLKDLE 238 >gi|291416188|ref|XP_002724329.1| PREDICTED: cytosolic thiouridylase subunit 1 homolog [Oryctolagus cuniculus] Length = 446 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 20/238 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ + ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---LALHLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++ + + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + + G + L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAAR-LARGGGLGSRGEGGALPRCRPLQLASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 + R + + + R R ++ ++ + + A Sbjct: 222 VLYAHSRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSVVLDLVHSAERLALAPAA 279 >gi|268323619|emb|CBH37207.1| conserved hypothetical protein, PP-loop family [uncultured archaeon] Length = 302 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 23/202 (11%) Query: 2 FLSPIE-SVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHS-VLSDRSFGKIKFSAI 56 F++ +E V+ +R + Y I VA+SGG DS LL L + DR+ ++F AI Sbjct: 28 FIADVERKVKKAMRKQLMIEYGDRIAVALSGGKDSSALLYMLKEKIFHDRN--DLEFFAI 85 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----------EA 105 +VD ++ +R V L I + S+ + T A+ Sbjct: 86 AVDEGIKGFRSATLRNAERVAKELEIDCFIYSFAHEFGFTLDEIVAKGFDQAPCTFCGVL 145 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R ++ AK + AT ++TAH DD+++T+ + R E+ L G + Sbjct: 146 RRRILDVKAKEMGATKVVTAHNLDDEVQTILINYLRGDIERLGRLQGRRAEFVPR----- 200 Query: 166 SRPFLRCRREDIRSFLLQRNIS 187 +P ++ + L I Sbjct: 201 VKPLRDVYEKEAALYALVAGIP 222 >gi|308369177|ref|ZP_07666673.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002] gi|308328476|gb|EFP17327.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002] Length = 335 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%) Query: 7 ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + F R L V +SGG DS+ L + +A+ VDH L+ Sbjct: 24 AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 75 Query: 66 AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + L + V+ + AA + + ++ Sbjct: 76 SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 130 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AHT DDQ ETV + R + + YD RP L RR + + Sbjct: 131 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 183 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236 ++ +DP NTD RF R R+R V + AL ++ ++ A Sbjct: 184 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 243 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294 +P R + + + + ++R + GG L R ++R++ Sbjct: 244 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 302 Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321 + + R+V RR L + R Sbjct: 303 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 333 >gi|313897338|ref|ZP_07830881.1| PP-loop family protein [Clostridium sp. HGF2] gi|312957708|gb|EFR39333.1| PP-loop family protein [Clostridium sp. HGF2] Length = 317 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 25/253 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I V VSGG DSM LL ALH +DR+F + I + V Sbjct: 23 GDRIAVGVSGGKDSMVLLTALHMYSKFADRNF---EVVGIHIKLGF-PNMDFSE--VVAF 76 Query: 77 CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C + I ++ K + + + A + + AK +N T + H Sbjct: 77 CRQQGITFYQYDSQVYEILKRNPDKEGNIKCSLCSKFKKATVIDAAKKLNCTKVAFGHHS 136 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ M + G + + + + RP + DI S L + I + Sbjct: 137 DDAVETLLMNAIHG----GKLATFLPKMYMSRTDTTFIRPLVYSYESDILSALERNQIPF 192 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + + +D + R+ ++D+ L Y Q +++ + + R+ Sbjct: 193 VK-STCPNDGYTE---RQAMKDM-LQEFYRSYPMAQKNFIRMLYNEDQVELWHREGDHRA 247 Query: 249 IIAISQDILNIDS 261 A S +L + Sbjct: 248 EKAKSMSVLLKEE 260 >gi|293370774|ref|ZP_06617320.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f] gi|292634134|gb|EFF52677.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f] Length = 248 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|322804435|emb|CBZ01985.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum H04402 065] Length = 240 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 15/214 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ LL L S S K AI++D + + + Sbjct: 18 IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 VCS + + + + + + + R ++ ++K + I H + Sbjct: 73 VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M +G T L N+ I R + I+S + + ++ Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRSMIYIDEIAIKSMIKRYDLPII 188 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 ++P + +R ++ ++ +K + Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222 >gi|39995238|ref|NP_951189.1| C32 tRNA thiolase [Geobacter sulfurreducens PCA] gi|81703661|sp|Q74GW7|TTCA_GEOSL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|39982000|gb|AAR33462.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 282 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75 I VAVSGG DS LL L + R+ K + A+++D R + Y+ + Sbjct: 54 GDRIAVAVSGGKDSYTLLHILEGLRR-RAPVKYELVAVTIDSGYPGFR--SDVIASYLRE 110 Query: 76 VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + H + + +P + + + ++ A+ + + H DD + Sbjct: 111 QGFAHHLETTDHYDIIREKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFV 170 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ + G + + + + RP + +I F + Sbjct: 171 ETLLLNQF----FVGTLKAMAPRMLADNGETTVIRPLVYVEEREIIPFARENRFPVVCCS 226 Query: 193 SNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDL 226 + R R+++ + +++ +K + L Sbjct: 227 CPVCGTADLQRRRMKKLLTELEKENPAVKRSLLRAL 262 >gi|71020233|ref|XP_760347.1| hypothetical protein UM04200.1 [Ustilago maydis 521] gi|74700937|sp|Q4P6R3|CTU1_USTMA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|46099971|gb|EAK85204.1| hypothetical protein UM04200.1 [Ustilago maydis 521] Length = 396 Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 80/259 (30%), Gaps = 38/259 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + VL++R + +S+D + D + V Sbjct: 50 RGDRVAIGASGGKDSTVLAHCMK-VLNERYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ V+ S + R + A + I+T H Sbjct: 109 QQYQLPLKVLGYGELYGWTMDDIVKSVGRKNNCTFCGVFRRQALDRGAAALGVDHIVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAEK----------------------GMGLSGMCDTILYDLNLW 164 DD ETV M R + G G SG + + Sbjct: 169 NADDVAETVLMNVLRGDIARLERCTDIVTKGPDGSEDDQHQEGCGSSGSNGIGVGGSGIR 228 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 S+PF+ ++I + + + + R R F++D++ ++ Sbjct: 229 RSKPFMYAYEKEIVMYAYFKKLDYFSTECIYSPNAYRGYARTFLKDLE----AIRPSSIV 284 Query: 225 DLRVKVNNAVAMLIPKYLT 243 D+ V + + L Sbjct: 285 DIIQSVKQSRKTQLQNCLR 303 >gi|310798106|gb|EFQ32999.1| PP-loop family protein [Glomerella graminicola M1.001] Length = 842 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 15/146 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------KFSAISVDHCLRETAKDEVR 71 P I +AVSGG DSM L + + ++ K SA+ VDH LR + E + Sbjct: 64 QPRRIGLAVSGGVDSMALAYLFNRLREVNPLVRVVDNPLTKISALVVDHGLRPGSDAEAQ 123 Query: 72 YVSDVCSRLR-IAHSV--VSWKNSKPQT------GLMAAAREARYALISEHAKTINATLI 122 V+ LR + + V+W+ + L +AAR ARY + ++ + Sbjct: 124 GVARELRTLRYLRAHIDRVNWRAEGVEGDPAALPNLESAARRARYRRLGIFCAALHIESL 183 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148 AH DDQ ETV MR + +G+ Sbjct: 184 FLAHHQDDQHETVLMRLLAGHGSRGL 209 Score = 58.8 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211 M + D + I RP L ++ + + N+ W ED +N D R VR VR+ Sbjct: 318 MPRISVEDAGVMIYRPLLGFGKDRLVATCEANNVRWFEDSTNKDRTLTMRNAVRHMVREH 377 Query: 212 DLHALYLKMK--KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259 L A K + ++L + + + L + Sbjct: 378 ALPAALRKDNVLRLAARCDARVRGQEHEADRWLRRYSDAEFEPNVGTLAV 427 >gi|298482648|ref|ZP_07000832.1| conserved hypothetical protein [Bacteroides sp. D22] gi|298271111|gb|EFI12688.1| conserved hypothetical protein [Bacteroides sp. D22] Length = 248 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|299148919|ref|ZP_07041981.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] gi|295087122|emb|CBK68645.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Bacteroides xylanisolvens XB1A] gi|298513680|gb|EFI37567.1| conserved hypothetical protein [Bacteroides sp. 3_1_23] Length = 248 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|327357985|gb|EGE86842.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis ATCC 18188] Length = 419 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R ++ +S+D + D + V Sbjct: 44 ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDDSLETV 102 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + A + + Sbjct: 103 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 162 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 163 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 221 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 222 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 251 >gi|239608873|gb|EEQ85860.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis ER-3] Length = 421 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R ++ +S+D + D + V Sbjct: 46 ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + A + + Sbjct: 105 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|198434353|ref|XP_002125738.1| PREDICTED: similar to CG8078 CG8078-PA [Ciona intestinalis] Length = 347 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 17/204 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L L VL++R + +S+D + D + V Sbjct: 53 VAIGASGGKDSTVLAHTLK-VLNERYNYGLDLRLLSIDEGITGYRDDSLETVKRNQQEYD 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +V+S++ + R + A + I T H DD Sbjct: 112 LPLTVLSYETLYGWTMDAIVKKIGKKNNCTFCGVFRRQALDRGAMMLGVNKIATGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISW 188 ET+ M R + L I D + +PF ++I ++ + + + Sbjct: 172 IAETILMNILRGDIAR---LKRCTAIITGDDPSGIPRVKPFKYTYEKEIVAYAYFKKLDY 228 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 R R +++D++ Sbjct: 229 FSTECIYSPDAYRGHARAYLKDLE 252 >gi|169607112|ref|XP_001796976.1| hypothetical protein SNOG_06610 [Phaeosphaeria nodorum SN15] gi|111065321|gb|EAT86441.1| hypothetical protein SNOG_06610 [Phaeosphaeria nodorum SN15] Length = 437 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 50 RGERIAIGASGGKDSTVLASVLKTL-NERYDYGLDLVLLSIDEGIKGYRDDSLETVKRNA 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +++ + G R + A + ++T H Sbjct: 109 EQYGMDLTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVKHVVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 DD ETV M R + + N+ S+P ++I Sbjct: 169 NADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASSDPASNTNIKRSKPLKYAYEKEIVL 228 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + +++ + R R +++++ Sbjct: 229 YAHHKSLDYFSTECIYSPEAFRGSARALIKNLE 261 >gi|261884707|ref|ZP_06008746.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 229 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 6/145 (4%) Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA-EKGMGLSGMCDTILYDL 161 R+ R+ E T N ++ AH +D LE ++M+ + + GL I Sbjct: 6 RDIRHKFFEEICITFNYDPLILAHQLNDCLEWLFMQLSKGSGTVQLCGLEPTNTKIAEFE 65 Query: 162 NLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 N+ + RP + R +I S+L Q+NI++ D SN D +F+R +R D + Sbjct: 66 NIKKQISVIRPLINVSRNEIISYLKQKNINYFTDISNFDFKFKRNFIRANFSDAFIEKFE 125 Query: 218 LK-MKKFQDLRVKVNNAVAMLIPKY 241 +K F+ LR + I + Sbjct: 126 KGVIKSFEFLRADRTALLGEFIYED 150 >gi|70606217|ref|YP_255087.1| PP-loop family protein [Sulfolobus acidocaldarius DSM 639] gi|68566865|gb|AAY79794.1| pP-loop family protein [Sulfolobus acidocaldarius DSM 639] Length = 315 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 91/265 (34%), Gaps = 36/265 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E + F S I VAVSGG DS LL ++ + R F + I + Sbjct: 34 FERVVEKYKMFDGS----DRIGVAVSGGKDSTTLLHLMNKLAQKRGF---EIVGIHIHLG 86 Query: 62 LR---ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AR--------EARY 107 + + + + L + + +++ K T A R RY Sbjct: 87 IDMGKGYSDKSLEFALKNFQMLGVKYKLINVKEKYGFTIDEAKFKIRRPICSTCGLVKRY 146 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-- 165 + + E A+ ++T H +D + V LS + + + Sbjct: 147 S-MEEIAEEEGLDTVVTGHNLNDMAQFVLSGYFSGDVNN---LSRLKPVLPPTRGYKVKK 202 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDIDLHALYLK 219 +P ++I ++ + NI + D RV ++RR + +++ Sbjct: 203 VKPLFLIYEKEILTYAILNNIPFIYDSC---PHTFRVGGATQDKIRRKLEEMEDEIPGFM 259 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTV 244 + Q+ K+ + ++ K V Sbjct: 260 LLLVQNFTDKIQEPLEVIYSKVEEV 284 >gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] gi|326954535|gb|AEA28232.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190] Length = 328 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 117/329 (35%), Gaps = 37/329 (11%) Query: 8 SVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 +VR + +L P A ++V SGG+ +L L+ + + +A VDH L+E Sbjct: 16 AVRRALVALPAPVREAPVVVGCSGGA------DSLALTLAAAAELPGRVTAAIVDHGLQE 69 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + ++ + V P GL AAAR ARYA + + + ++ Sbjct: 70 GSAARSAALAADLGARGVPAGVHPVVVGGPG-GLEAAARRARYAALLAARPAPD-SPVLL 127 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DDQ ETV + R + + +D +RP L RR R+ + Sbjct: 128 GHTLDDQAETVLLGLGRGSGPRS-----IAGMRPWDP--PWARPLLGVRRATTRAACAEL 180 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIP 239 + DP N D RF RVR+RR V + L ++ LR + A+ Sbjct: 181 GATAWNDPHNDDPRFTRVRLRREVLPLLEDVLAGGVAEALVRTAAQLREDGDVLDALAGE 240 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299 + + + + LR G R + + L Sbjct: 241 LLAAARLPEGGLRAATLSPAPQAVRRRALREWLLTSG-------VRDLTDLHLRAVDDLV 293 Query: 300 GCVSI-------GRVVIDRRANFLWITRA 321 G G + + RR L + RA Sbjct: 294 GRWRGQGGVALPGGLDLVRRDGRLSLHRA 322 >gi|255525719|ref|ZP_05392651.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296184822|ref|ZP_06853233.1| PP-loop family protein [Clostridium carboxidivorans P7] gi|255510621|gb|EET86929.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296050604|gb|EFG90027.1| PP-loop family protein [Clostridium carboxidivorans P7] Length = 245 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 17/219 (7%) Query: 1 MFLSPI-ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 MFL I +S+ F + + V +SGG DS+ LL L ++ +++D Sbjct: 11 MFLKKIIQSISKF-NMIESGDRVAVGLSGGKDSVFLLFCLK-LIQQTHIKDFSLMGVNID 68 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113 L ++ + + C+ I + + + + + R + Sbjct: 69 MGL----GMDMSPLINFCNENEIPIIIEKTNIAEVIFEERKEKSPCSLCSKLRKGALVRV 124 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK N I H DD +ET++M + + G + D + I RP + R Sbjct: 125 AKANNINKIALGHNTDDVIETLFMNVLK-VGKLGAFHPNIYHE---DNKMSIIRPMIYLR 180 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 I + N+ + D + R ++ + ++ Sbjct: 181 EPLIEKLVKDLNLPVIKSLCPEDKKTTREEMKNLLFSLE 219 >gi|193211090|ref|NP_497589.3| hypothetical protein Y71H2B.5 [Caenorhabditis elegans] gi|171461096|gb|AAK93869.3|AC024202_7 Hypothetical protein Y71H2B.5 [Caenorhabditis elegans] Length = 957 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 21/225 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57 M+ + + ++ + +LV +SGG DS+ LL L + + + AI+ Sbjct: 702 MYKKVTDIIHQ-LKMIRDGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFELGAIT 760 Query: 58 VDHCLRETAKD-EVRYVSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALI 110 VD + + R + + C RL I + ++ P + A + + Sbjct: 761 VD----PGSAEYNPRPLIEYCRRLNIDYFYEEQDIIGAARKTPGLRSICAFCSRMKRGRL 816 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A+ ++ DD E+ ++ + ++ G + D L + RP + Sbjct: 817 AAAAQLHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDGALRVIRPLV 872 Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213 R + +R+F + + P+ + ER RV++ + +L Sbjct: 873 MVREKALRNFAEDKKLPVVAENCPACFNQATERHRVKQLLAQQEL 917 >gi|170046274|ref|XP_001850697.1| ATP-binding domain protein 3 [Culex quinquefasciatus] gi|167869089|gb|EDS32472.1| ATP-binding domain protein 3 [Culex quinquefasciatus] Length = 341 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + IE + F R + + +A SGG DS L + ++ ++R +K +S+D + Sbjct: 36 NTIEQGKLFERGSL----VAIAASGGKDSTVLAHVMKTL-NERYDYGLKLVLLSIDEGIS 90 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISE 112 D + V + ++ ++ ++ R + Sbjct: 91 GYRDDSLETVKKNRDDYGMELKILDYEELYGWTMDSIVAKIGKSNNCTFCGVFRRQALDR 150 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + + T H DD ETV M R + + ++ +P Sbjct: 151 GAHMMKVACVATGHNADDIAETVLMNILRGDVARLRRCCDIKTGGNSPDSIPRVKPLKYS 210 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 211 YEKEIVMYAHFKKLVYFSTECIYAPNAYRGHARAFLKDLE 250 >gi|326427787|gb|EGD73357.1| PP-loop domain-containing protein [Salpingoeca sp. ATCC 50818] Length = 1059 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 17/195 (8%) Query: 2 FLSPI-ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 L PI E++R F + +L+ +SGG DS+ LL LH++ R+ K +A++++ Sbjct: 807 LLRPIGEAIRQF-SMITDGDRVLIGLSGGKDSLTLLHCLHALQR-RAPISFKLAAVTMN- 863 Query: 61 CLRETA-KDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114 + + ++L + + + + + + + ++ A Sbjct: 864 ---PNFPGFDPAPLKAYLAKLGVEYFFETQDLLQLAKDTKPSSICSWCSRMKRGILYTVA 920 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + ++ DD E+ M + + + M + D +L I RP R Sbjct: 921 RREGYNVLALGQHLDDLAESFIMTAFHNGKLRTMNAHYLNDK----GDLRIIRPLAFVRE 976 Query: 175 EDIRSFLLQRNISWC 189 R+F + + Sbjct: 977 RQTRAFAVANGLPVI 991 >gi|260893554|ref|YP_003239651.1| PP-loop domain protein [Ammonifex degensii KC4] gi|260865695|gb|ACX52801.1| PP-loop domain protein [Ammonifex degensii KC4] Length = 244 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 17/179 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--V 73 + I V VSGG DS+ LL L + D S AI +D EV + Sbjct: 14 IAPGDKIAVGVSGGKDSVALLRILAHL-RDYSHLSFSMVAIMIDPGW-----KEVDIGPL 67 Query: 74 SDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 +D CS+ I +V +K + + + R L+ A ++ + H Sbjct: 68 ADFCSKFDIPFYLVKHPIARIIAAKGENNPCSLCAKLRSGLLYSKAVSLGCRRVALGHHL 127 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET ++ G + L + + + RPF + F+ + + Sbjct: 128 DDVIETFFLNLV----HAGYLRTFRPVVYLERMGIHLIRPFSYVPESALVHFVAREGLP 182 >gi|215405673|ref|ZP_03417854.1| cell cycle protein mesJ [Mycobacterium tuberculosis 02_1987] gi|218755403|ref|ZP_03534199.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503] gi|219559696|ref|ZP_03538772.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17] Length = 294 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 104/312 (33%), Gaps = 36/312 (11%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IA 83 +SGG DS+ L + +A+ VDH L+ + L + Sbjct: 2 GLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPGSATVAETARIQAISLGCVD 53 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + AA + + ++ AHT DDQ ETV + R Sbjct: 54 ARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRGS 108 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + + YD RP L RR + + ++ +DP NTD RF R R Sbjct: 109 GARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTR 161 Query: 204 VRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +R V + AL ++ ++ A +P R + Sbjct: 162 LRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSA 221 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKS----GKRGCVSIGRVVI 309 + + + ++R + GG L R ++R++ + + R+V Sbjct: 222 LTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVA 280 Query: 310 DRRANFLWITRA 321 RR L + R Sbjct: 281 GRRDGVLVLRRE 292 >gi|115448847|ref|NP_001048203.1| Os02g0762300 [Oryza sativa Japonica Group] gi|75225396|sp|Q6Z6G6|CTU1_ORYSJ RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|46805899|dbj|BAD17212.1| n-type ATP pyrophosphatase-like [Oryza sativa Japonica Group] gi|113537734|dbj|BAF10117.1| Os02g0762300 [Oryza sativa Japonica Group] gi|215741300|dbj|BAG97795.1| unnamed protein product [Oryza sativa Japonica Group] Length = 363 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 15/210 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L + + R + +SVD + D + V Sbjct: 60 NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NRRHKYCLDLFLLSVDEGITGYRDDSLETV 118 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS+K+ + R + A + I Sbjct: 119 KRNEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV + R + + + T D + +PF ++I + Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAY 236 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 237 FKKLDYFSTECIYSPNAYRGFAREFIKDLE 266 >gi|215432596|ref|ZP_03430515.1| cell cycle protein mesJ [Mycobacterium tuberculosis EAS054] Length = 294 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 60/312 (19%), Positives = 104/312 (33%), Gaps = 36/312 (11%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IA 83 +SGG DS+ L + +A+ VDH L+ + L + Sbjct: 2 GLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPGSATVAETARIQAISLGCVD 53 Query: 84 HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143 V+ + AA + + ++ AHT DDQ ETV + R Sbjct: 54 ARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRGS 108 Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203 + + YD RP L RR + + ++ +DP NTD RF R R Sbjct: 109 GARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTR 161 Query: 204 VRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255 +R V + AL ++ ++ A +P R + Sbjct: 162 LRTEVLPLLEEVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSA 221 Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKS----GKRGCVSIGRVVI 309 + + + ++R + GG L R ++R++ + + R+V Sbjct: 222 LTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVA 280 Query: 310 DRRANFLWITRA 321 RR L + R Sbjct: 281 GRRDGVLVLRRE 292 >gi|195028039|ref|XP_001986888.1| GH20281 [Drosophila grimshawi] gi|226711418|sp|B4J5B3|CTU1_DROGR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|193902888|gb|EDW01755.1| GH20281 [Drosophila grimshawi] Length = 343 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 13/210 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + VA SGG DS L + +L++R + +S+D + D + V Sbjct: 45 RLFRRGEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 ++ ++S++ ++ R + AK + I Sbjct: 104 KQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ETV M R + + + T + ++ +P ++I + Sbjct: 164 ATGHNADDIAETVLMNILRGDTARLRRCTNI-RTGGGEDSIPRVKPLKYSYEKEIVMYAH 222 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 223 YKRLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|15669347|ref|NP_248152.1| hypothetical protein MJ_1157 [Methanocaldococcus jannaschii DSM 2661] gi|2501587|sp|Q58558|Y1157_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1157 gi|1592323|gb|AAB99161.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 341 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 21/220 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I + +SGG DS+ + L + + K VD ++ +YV + C Sbjct: 84 KIGIGISGGKDSLVMAYILKELF--KHIPNAKLICFFVDEGIKGFRNIAEKYVKEFCKEY 141 Query: 81 RIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATLIMT 124 + ++ +++ T + R L+++HA + Sbjct: 142 NLDLKIIKFEDEIGYTLDEIVKNDYLSKLNIGKPCSFCGVVRRYLLNKHALKEGCDYLAI 201 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD +T+ M + + + +P E+++ + Sbjct: 202 GHNLDDFCQTILMNYVEGNIKN---IIQFGKEFEGGGFVKRIKPLKLIPEEEVKLYAEIN 258 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 NI + +P R R+++ + ++ +K + Sbjct: 259 NIKYQREPCPYSSLSYRHRMKKVIEILEEEKPGVKFSILR 298 >gi|124485791|ref|YP_001030407.1| hypothetical protein Mlab_0970 [Methanocorpusculum labreanum Z] gi|124363332|gb|ABN07140.1| PP-loop domain protein [Methanocorpusculum labreanum Z] Length = 300 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 18/177 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + I V +SGG DS LL L + + I+VD + D + Sbjct: 44 RMIEPGDRIAVGLSGGKDSTVLLTVLAKL-----DLDAELIPITVDEGIGGYRDDTILAA 98 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA-------RYALISEHAKTINATLIM 123 + +C +L +A +VS+ + +T + R+A R +++ A+ + AT I Sbjct: 99 TRLCDKLGLADRLVSFTDICGKTLDELLSNDPRQACSVCGTLRRRALNQAAREVGATKIA 158 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 T H DD+ ++V M R + G L+ L +P R + ++ Sbjct: 159 TGHCLDDEAQSVLMNYLRGDVTRVTGSYRTNADTLF---LPRIKPLCRATERETVAY 212 >gi|242066610|ref|XP_002454594.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor] gi|241934425|gb|EES07570.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor] Length = 364 Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L + ++G + +S+D + D + V Sbjct: 65 AGERVAIGASGGKDSTVLAYVLSELNRHHNYG-LDLFLLSIDEGITGYRDDSLETVKRNE 123 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +VS+K+ + R + A + A I+T H Sbjct: 124 IQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKADKIVTGH 183 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV + R + + + T D + +PF ++I + + + Sbjct: 184 NADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAYFKKL 241 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 242 DYFSTECIYSPNAYRGFAREFIKDLE 267 >gi|268552227|ref|XP_002634096.1| Hypothetical protein CBG01646 [Caenorhabditis briggsae] gi|226711413|sp|A8WR63|CTU1_CAEBR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1; AltName: Full=Thiolation of uridine in tRNA protein 1 gi|187038054|emb|CAP22971.1| CBR-TUT-1 protein [Caenorhabditis briggsae AF16] Length = 372 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + ++ +DR + +S+D ++ D + V Sbjct: 56 RGERVAIGASGGKDSTVLAFVMKTL-NDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNR 114 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +++S+ + + R + A I AT ++T H Sbjct: 115 VEYGLPLTILSYNDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVTGH 174 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + + +L ++P C DI + + Sbjct: 175 NADDMAETVLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARSNQL 232 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R++VRD++ Sbjct: 233 EYFYTECIYAPNAYRGYARKYVRDLE 258 >gi|34558096|ref|NP_907911.1| hypothetical protein WS1792 [Wolinella succinogenes DSM 1740] gi|34483814|emb|CAE10811.1| conserved hypothetical protein-Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Wolinella succinogenes] Length = 248 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 17/191 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +S + + +LV +SGG DS+ L L + L+ + K +F A++VD+ + Sbjct: 9 ISTFGKTNAHFKLITENDRVLVGLSGGKDSLL-LATLLARLARHAPFKFEFKALTVDYGI 67 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAK 115 ++ Y+ + C+ I H V + + + + R + A Sbjct: 68 ----GEDFSYLQNYCAENGIPHEVFKTNIMEVMQEKRRENSSYCSFCSRLRRGALYSKAL 123 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD E+ +M + A + M LW+ RP + R Sbjct: 124 EGGYNKLALGHHLDDAAESFFMNFSYNGAIRS-----MPPIYRAYNGLWVIRPLIWLRER 178 Query: 176 DIRSFLLQRNI 186 + F+L+ N+ Sbjct: 179 QMVDFVLKNNL 189 >gi|241954188|ref|XP_002419815.1| uncharacterized protein YGL211W homologue, putative [Candida dubliniensis CD36] gi|223643156|emb|CAX42030.1| uncharacterized protein YGL211W homologue, putative [Candida dubliniensis CD36] Length = 384 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L L ++ ++R +K +S+D ++ D + V Sbjct: 67 RGEKIAIGASGGKDSTVLASILKTL-NERYDYGLKLVLLSIDEGIKGYRDDSLATVKRNQ 125 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + +VS+K+ + A R + A+ + ++T H Sbjct: 126 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGINHVVTGH 185 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + S+PF +++I + + + Sbjct: 186 NADDVAETVLMNLLRGDVARLEHSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 244 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++ ++ Sbjct: 245 DYFSTECTYAPEAFRGTARELLKSLE 270 >gi|322371601|ref|ZP_08046147.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253] gi|320548892|gb|EFW90560.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253] Length = 322 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 19/218 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P L+ +SGG DS+ L LH ++ +I+ A+++ + + ++ Sbjct: 53 PQVWLIGLSGGKDSVVLTKILHDTFAE--DPRIELVALTIHEGIEGYRDKSLDACLELTD 110 Query: 79 RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L I H VVS++ A R L+S++A+ A ++T H Sbjct: 111 DLDIRHEVVSYEEEFDLRMDDVVGKDPENMAACAYCGVFRRDLLSKYAEEYGANKLLTGH 170 Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 DD+ ET M L+G + D + ++P +++ + Sbjct: 171 NLDDEAETALMNFLEGDVAQVAKHFDASLAGFDERSDQDEFVPRAKPLRDVPEKEVALYA 230 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++ R +++ + ++ + + Sbjct: 231 HLEDLPAHITECPHSSEAYRAEIQQLMLSLEENHPGTR 268 >gi|296133881|ref|YP_003641128.1| PP-loop domain protein [Thermincola sp. JR] gi|296032459|gb|ADG83227.1| PP-loop domain protein [Thermincola potens JR] Length = 261 Score = 102 bits (255), Expect = 9e-20, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 18/232 (7%) Query: 9 VRFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 VR +R+++ IL+ +SGG DS L+ AL + F K AI++D Sbjct: 10 VRKLMRAIIEFELVEPNDRILIGLSGGKDSAFLVYALGVLRRHFPF-KFDIGAITIDLGF 68 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTI 117 + + + D C RL + + ++ Q AA R +IS A+ Sbjct: 69 TDKFDR--QPLEDFCRRLDVPFFFEKTQIAEIAFSPSQPNPCAACAFFRKGIISACARAE 126 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + AH DD +ET M + + + T L + +P + R ++I Sbjct: 127 GFNKVAFAHHLDDAVETFLMSQLFSGQIR----TFLPKTQWDRSGLALIKPLVYLREKEI 182 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + L D + +R ++ ++ + + +R + Sbjct: 183 KGALRFIGFEPIPGGCPRDKKTKRETTKQLIKFLVKEHPQVFENLTAAMRRQ 234 >gi|238881677|gb|EEQ45315.1| VEG136 protein [Candida albicans WO-1] Length = 389 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I++ SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 66 RGEKIVIGASGGKDSTVLASILKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLATVKRNQ 124 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + +VS+K+ + A R + A+ + ++T H Sbjct: 125 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHVVTGH 184 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + S+PF +++I + + + Sbjct: 185 NADDVAETVLMNLLRGDVARLESSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 243 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++ ++ Sbjct: 244 DYFSTECTYAPEAFRGTARELLKSLE 269 >gi|322503987|emb|CBZ39074.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 322 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I++ R F P + VA SGG DS L+ L ++ S R I+ +SVD Sbjct: 42 DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-SKRHNYGIRIELVSVDEG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S+++ R + Sbjct: 95 IAGYRDDSLETVKRNSACYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169 + A + A I T H DD ET+ M R A + LS + + +P Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R V+D++ Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254 >gi|310828641|ref|YP_003960998.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612] gi|308740375|gb|ADO38035.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612] Length = 236 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 21/233 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L P+ + I V +SGG DS LL+A+ + I++D Sbjct: 5 LGPLRRAVEKYEMIRPGDRIAVGLSGGKDSTALLVAMKRFQYFSPVP-FELEGITLDMGF 63 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116 E + +C+ L I +++ + ++ + A + + + A Sbjct: 64 -GGMDFEP--LVQLCAELDIPYTIKKTQIGPIVFEARQEKNPCALCARMKRGALHDLAIE 120 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I H DD +ET ++ +G + T L ++ + RP + + +D Sbjct: 121 RGCRKIALGHHADDAIETFFLSLF----YEGRINTFSPVTYLDRKDITLIRPLIFVKEKD 176 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERV-------RVRRFVRDIDLHALYLKMKK 222 I + + + D +R +R+ + ++D L K Sbjct: 177 IIYNPEIKELPVIKSTCPADGHTKREDMKDMMKELRKTIPELDDRILKAIQNK 229 >gi|48477224|ref|YP_022930.1| ATPase of the PP-loop superamily [Picrophilus torridus DSM 9790] gi|48429872|gb|AAT42737.1| ATPases of the PP-loop superamily [Picrophilus torridus DSM 9790] Length = 312 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 19/228 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS+ L L+ +LSDR +K A +VD + + + +C L I Sbjct: 53 VAISGGKDSLVTLYVLNKILSDRR--NLKIKAFTVDEGISGYRPSGIEKAARLCKSLGID 110 Query: 84 HSVVSWKNSKPQTGLM-----------AAAREARYALISEHAKTINATLIMTAHTFDDQL 132 H ++S+K+ T + R +L+++ + A + DD Sbjct: 111 HEIISFKHEFGYTLDEIMSIDNTRISCSHCGPMRRSLMNKISMYNKADYLALGINLDDYA 170 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 +++ M R + + L+ I D + P + +++ + + NI D Sbjct: 171 QSILMNVVRGDISRYIRLAPHTG-IERDGLIPRIIPLRKIPEKEVVIYAILNNI----DY 225 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 N+ + R R R + ++ L K + VK + ++ Sbjct: 226 DNSWCPYYRDAYRNEAR-MIINMLEEKTPGTRQAIVKFFDGTRDILKN 272 >gi|225719516|gb|ACO15604.1| ATP-binding domain-containing protein 3 [Caligus clemensi] Length = 335 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 12/206 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + + SGG DS L + ++ +DR + +S+D + D + V Sbjct: 50 HGERVAIGASGGKDSTVLAHTMKTL-NDRYNYGLDLFLLSIDEGISGYRDDSLETVKRNR 108 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++S+++ + R + A + I T H Sbjct: 109 DTYGLPLKILSYEDLYGWTMDRIVEEVGRKNNCTFCGVFRRQALDRGAAILEVNKIATGH 168 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + +PF ++I + + + Sbjct: 169 NADDIAETVMMNVLRGDIGRLSRCTAPITGSGEGETIPRVKPFKYAYEKEIVMYAYFKKL 228 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 229 DYFTTECIYSPDAYRGHARAFIKDLE 254 >gi|321398807|emb|CBZ09046.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 322 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I++ R F P + VA SGG DS L+ L ++ S R I+ +SVD Sbjct: 42 DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-SKRHNYGIRIELVSVDEG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S+++ R + Sbjct: 95 IAGYRDDSLETVKRNSACYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169 + A + A I T H DD ET+ M R A + LS + + +P Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R V+D++ Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254 >gi|57641491|ref|YP_183969.1| PP family ATPase [Thermococcus kodakarensis KOD1] gi|57159815|dbj|BAD85745.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1] Length = 304 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 23/198 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +LV VSGG DS L + + ++ + E ++ RY Sbjct: 42 KMLKPDEKVLVVVSGGKDSAVTAHVLKKL-------GYNIECLHINLGIGEYSEKGERYA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124 + C ++ +V K R RY + ++ A + T Sbjct: 95 REQCEKIGAPLHIVRLKELLGYGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 153 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQ 183 H DD+ + + ++ + + G ++ L +P ++ ++ L Sbjct: 154 GHNLDDEA-SFIFNNIMNWNTQYLAKQGPVTPSQFNGKLVKKVKPLYEVTEREVVAYALA 212 Query: 184 RNISWCEDPSNTDDRFER 201 I + D + R Sbjct: 213 NGIEYEIDECP----YAR 226 >gi|325297688|ref|YP_004257605.1| PP-loop domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324317241|gb|ADY35132.1| PP-loop domain protein [Bacteroides salanitronis DSM 18170] Length = 255 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 22/229 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77 ILV +SGG DS+ LL L S + A V + A + + Y+ Sbjct: 28 GDKILVGLSGGKDSLALLELLAK-RSRIYKPRFSVVAAHV--VMSNIAYESDTGYLRTFS 84 Query: 78 SRLRIAH--SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L + S+ S + R + AK I H DD LET Sbjct: 85 EALGVPFVGYEASFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHQDDILET 144 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-------IS 187 + M +G + ++ ++ I RP ++ R Sbjct: 145 LLMNMT----FQGAISTMPPRLVMRKFDMTIIRPLCLVHEAELSELARIRGYHKQLKNCP 200 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + +D TD + V R + ++ A Y +++ + A A Sbjct: 201 YEKDSYRTDMK----EVLRTLERMNPEARYSLWNSMTNVQADLLPAYAE 245 >gi|50303243|ref|XP_451563.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|74607581|sp|Q6CWX6|CTU1_KLULA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|49640695|emb|CAH01956.1| KLLA0B00737p [Kluyveromyces lactis] Length = 371 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V SGG DS L L +L+DR ++ +S+D + D + V Sbjct: 64 RGERIAVGASGGKDSTVLAYVLK-LLNDRHDYGVEIVLLSIDEGIVGYRDDSLATVKRNQ 122 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + +VS+K+ T A R + A + ++T H Sbjct: 123 VQYDLPLEIVSYKDLYNWTMDEIVACAGIRNSCTYCGVFRRQALDRGAAKLGIKHVVTGH 182 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + L + I R PF +++I + + Sbjct: 183 NADDMAETVLMNILRGDVAR---LEKSTSILTQSSGSPIKRSKPFKYSYQKEIVLYAHYK 239 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 240 KLDYFSTECSYAPEAFRGTARELMKNLE 267 >gi|326791319|ref|YP_004309140.1| PP-loop domain protein [Clostridium lentocellum DSM 5427] gi|326542083|gb|ADZ83942.1| PP-loop domain protein [Clostridium lentocellum DSM 5427] Length = 242 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 27/234 (11%) Query: 9 VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DH 60 VR V+ + I + +SGG DS+ L +AL + + I+V + Sbjct: 10 VRRAVQDYNMIAEGDRIAIGISGGKDSLILALALSHLKRFYP-KSFEIMGITVSLGFDNF 68 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114 L E V L++ V + + + ++ + + R + E A Sbjct: 69 DLSE--------VGSFFDTLQVPFYVCNTQIAQIIFEERKESNPCSLCSKMRKGALYEEA 120 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + T I H DD ET+ M +G + T + ++L I RP + Sbjct: 121 KEMGCTKIALGHNKDDINETLLMSLF----YEGRIHTMAPVTYMDQVDLHIIRPLIYAPE 176 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 +DIR F+ + + P D + +R + + + L F ++ Sbjct: 177 KDIRGFVKKEGFPVVKSPCPADGQTKRETTKELISSLQRDIPRLPEHLFGAIQR 230 >gi|167762625|ref|ZP_02434752.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC 43183] gi|167699731|gb|EDS16310.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC 43183] Length = 253 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L S + A V + + + + Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLAR-RSRILKPRFSVVAAHVVMRN--ISYQSDTD--YLRS 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + ++ + R + AK I H DD L Sbjct: 86 YAESQGVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G S ++ ++ I RP D+ RN Sbjct: 146 ETLLMNIT----YQGAFGSMPPRLVMKKFDMTIIRPMCLVHESDLAELAAIRN 194 >gi|254168734|ref|ZP_04875576.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|289596819|ref|YP_003483515.1| PP-loop domain protein [Aciduliprofundum boonei T469] gi|197622360|gb|EDY34933.1| conserved hypothetical protein TIGR00269, putative [Aciduliprofundum boonei T469] gi|289534606|gb|ADD08953.1| PP-loop domain protein [Aciduliprofundum boonei T469] Length = 308 Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 19/202 (9%) Query: 2 FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 FL I+ V+ +R IL+AVSGG DSM + +H + ++ A++ Sbjct: 26 FLEFIDRKVKREIREQAHFKKGDKILIAVSGGKDSMLTMYQMHKIFGKWR--DLELVAVT 83 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREAR 106 VD + + ++ + + L I H V+++K + R Sbjct: 84 VDEGIGDFRRNCAKVANIYARELGIEHEVITFKEYLGITTDDVARVDKELKPCTYCGVFR 143 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 +++ +AK I A ++ DD +++ M R + L+ + I Sbjct: 144 RKVLNMYAKEIGANYLILGLNLDDIAQSIIMNITRGDTARLARLAPHKKIREGFIPRII- 202 Query: 167 RPFLRCRREDIRSFLLQRNISW 188 P R R ++R ++ NI + Sbjct: 203 -PLRRVRENEVRLYMNLANIPY 223 >gi|269123992|ref|YP_003306569.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315318|gb|ACZ01692.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112] Length = 283 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 13/173 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I +AVSGG DS+ L+ + D+ F +F A+S++ RE ++++ Sbjct: 50 GDKIAIAVSGGKDSLLLVKLFQELKKDKRF-NFEFKALSLNPGFREE---DLKHFKFNLK 105 Query: 79 RLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I ++ WK + + R ++ ++ + + + H FDD +E Sbjct: 106 ELNIDCDIIDTNIWKVANEMANEYPCFLCAKMRRGILYKNIEKMGYNKLALGHHFDDVIE 165 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T + K + + NL + RP + EDI F + I Sbjct: 166 TTLINLFYGGTLK----TMLPKMPSTSGNLTLIRPMVNVHEEDIIKFTKKNGI 214 >gi|71402808|ref|XP_804271.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70867153|gb|EAN82420.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 329 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 19/228 (8%) Query: 23 LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +VA SGG DS L+ + +L++R ++ +S+D + D ++ V + Sbjct: 54 VVACGASGGKDSTVLMHLMK-LLNERHGYDVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112 Query: 81 RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + V+S+K R + A + AT I+T H D Sbjct: 113 ELPLRVISYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET+ M R + D + +P ++I + + + + Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230 Query: 190 EDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + R R + V + + ++ + LRVK +V Sbjct: 231 TTECSYSREAFRSEARTLLKEVEKLQPRCILDTIRSGERLRVKERESV 278 >gi|85096263|ref|XP_960229.1| VEG136 protein [Neurospora crassa OR74A] gi|28921712|gb|EAA30993.1| VEG136 protein [Neurospora crassa OR74A] gi|39979201|emb|CAE85572.1| conserved hypothetical protein [Neurospora crassa] Length = 403 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 46 NLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + AK ++ + Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLDIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ET+ M R + L+ + + D + + R P ++I + Sbjct: 165 VTGHNADDVAETILMNLLRGDMGR---LARSTNIVTGDDSSDVKRSKPLKYAYEKEIVMY 221 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++ ++ Sbjct: 222 AYHKKLDYFSTECIYSPEAFRGTARALIKQLE 253 >gi|119113899|ref|XP_314122.3| AGAP005220-PA [Anopheles gambiae str. PEST] gi|226711467|sp|Q7Q9I4|CTU1_ANOGA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|116128341|gb|EAA09344.3| AGAP005220-PA [Anopheles gambiae str. PEST] Length = 342 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 13/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + +A SGG DS L + ++L+ R + +S+D + D ++ V Sbjct: 45 QLFRPGEKVAIAASGGKDSTVLAHVM-NLLNKRYNYGLDLVLLSIDEGITGYRDDSLKTV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + V+S++ ++ R + A+ + + Sbjct: 104 AQNRDDYGMPLRVLSYQELYGWTMDRIVAEIGRSNNCTFCGVFRRQALDRGARLMEVDCV 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ETV M R + + + +P ++I + Sbjct: 164 ATGHNADDIAETVIMNILRGDTARLRRCCDIKTGSKEADTIPRVKPLKYSYEKEIVMYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 224 FKKLVYFSTECVFAPNAYRGHARAFLKDLE 253 >gi|62751601|ref|NP_001015743.1| cytoplasmic tRNA 2-thiolation protein 1 [Xenopus (Silurana) tropicalis] gi|82179029|sp|Q5FW05|CTU1_XENTR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|58476345|gb|AAH89678.1| MGC107918 protein [Xenopus (Silurana) tropicalis] Length = 341 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 15/210 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L VL++R + +SVD + D + V Sbjct: 45 KLFNPGEKVGIGASGGKDSTVLAHVLK-VLNERYAYGLDLILVSVDEGISGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS++ R + A + I Sbjct: 104 KRNQQQYELPLKIVSYQELYGWTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGVNKI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ETV M R + T + + +P ++I + Sbjct: 164 CTGHNADDIAETVLMNFLRGDIARLR--RCTSITTGSEGAIPRCKPLKYAYEKEIVLYAY 221 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 222 FKKLDYFSTECIYSPNAYRGHARAFLKDLE 251 >gi|293400608|ref|ZP_06644753.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305634|gb|EFE46878.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 315 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 20/204 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V VSGG DSM LL ALH F +F + + L E + V+ C Sbjct: 23 GDRIGVGVSGGKDSMVLLTALHMYAK---FCDRRFEVVGIHIKL-GFPNMEFQEVTQFCE 78 Query: 79 RLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I ++ K + + + A +++ AK ++ + H DD Sbjct: 79 HLGIEFHQIDSKVYEILKRNLDKNGRIRCSLCSKFKKATVNQAAKDLHCNKVAFGHHSDD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+ M + G + + L + ++ RP + DI + + +I + + Sbjct: 139 AIETLLMNAIHG----GKLATFLPKMHLSNDDITFIRPLIYAHENDILNAQMLNDIPFVK 194 Query: 191 DPSNTDDRFERVRVRRFVRDIDLH 214 + +D + R+ ++D+ H Sbjct: 195 -STCPNDGYTE---RQAMKDMLNH 214 >gi|154148598|ref|YP_001406280.1| PP-loop family protein [Campylobacter hominis ATCC BAA-381] gi|153804607|gb|ABS51614.1| PP-loop family protein [Campylobacter hominis ATCC BAA-381] Length = 243 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 17/183 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + IL+ +SGG DS+ L L + S K +F A+++ + + E + Sbjct: 18 KMFEEGDRILLGLSGGKDSLVLAHILKH-FNSVSPLKWEFKAVTLSYGINEN----FEPL 72 Query: 74 SDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 I H ++ + +P T + R + +A + AH Sbjct: 73 KKHLKEFEIPHDIIESNIFEFGKEKIRPNTTFCSFCSRMRRGYLYSYALKNGFNKLALAH 132 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E+ +M G L + + + I RP + R IR ++ + Sbjct: 133 HLDDAAESFFMNL----GFNGA-LRTLAPKYKAENQIVIIRPLILARERQIRDCAIKNEM 187 Query: 187 SWC 189 Sbjct: 188 PII 190 >gi|41615304|ref|NP_963802.1| hypothetical protein NEQ523 [Nanoarchaeum equitans Kin4-M] gi|40069028|gb|AAR39363.1| NEQ523 [Nanoarchaeum equitans Kin4-M] Length = 324 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 37/264 (14%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ F ++ P + VAVSGG DS+ LL L + + +++D ++ Sbjct: 48 KAIKEF--NMFSPGDRVAVAVSGGKDSVSLLHFLTKHKDELELK--EVVGLAIDEGIKGY 103 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---------------AAREARYALI 110 + Y+ D + + ++S+K T R L+ Sbjct: 104 RDVTLNYLKDFAKKHNLKIKIISFKEEIGLTLDEMFELTKKYNLGYWPCTYCGVFRRWLL 163 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 +++A ++ T H +D+ +TV + + + ++ + +PF Sbjct: 164 NKYAIEH-FDVLATGHNLNDEAQTVILNLAEHNIKDLAKGGPVTGIKRHNKFIKRVKPFY 222 Query: 171 RCRRED--IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 ++ I S + + N+ + E P + R R +VRD+ + K + +R Sbjct: 223 YITEKETTIYSIVNKLNVPYIECP------YARGAFRIYVRDL--------LYKMEHVRE 268 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAI 252 N + + + R + Sbjct: 269 LHENIIKKYLSFRDKLQKRYNFEL 292 >gi|152964498|ref|YP_001360282.1| tRNA(Ile)-lysidine synthetase [Kineococcus radiotolerans SRS30216] gi|151359015|gb|ABS02018.1| tRNA(Ile)-lysidine synthetase [Kineococcus radiotolerans SRS30216] Length = 324 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 23/301 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVA SGG+ L + + ++ ++VDH L + V + L Sbjct: 20 VLVACSGGA---DSLALAAATAVEAPAAGLRAGLVTVDHGLHPASATVAATVLEQGRGLG 76 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + + + G AAAR ARYA + A+ + A ++ HT DDQ ETV + R Sbjct: 77 LDPVRATRVDVGRTGGPEAAARTARYAALRAAAEELGALAVLLGHTLDDQAETVLLGLAR 136 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + L+GM RP L R +R+ + DP+N D R Sbjct: 137 GSGTR--SLAGMPAVR-----GPFRRPLLGVERAVVRAACAAEGLEPWADPANADRALAR 189 Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH--MRSIIAISQDILNI 259 RVR V + L + + + A + + A D+L Sbjct: 190 ARVRHDVLPLLEDRLGPGVARALARTARAARDDADALDEIAAASDPFTGGAAAVADLLPA 249 Query: 260 DSTLLFYLLRVSAAICG---GQISLPGYRSMERVML--------FLKSGKRGCVSIGRVV 308 L LR +A G G ++ ++E ++L L G G + GR+V Sbjct: 250 RPALRRRWLRAAALGAGCPAGALTAAHVDALEALLLDWRGQGPVHLPGGASGVRTCGRLV 309 Query: 309 I 309 + Sbjct: 310 L 310 >gi|225711790|gb|ACO11741.1| ATP-binding domain-containing protein 3 [Caligus rogercresseyi] Length = 335 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 13/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L + ++ +DR + +S+D + D + V Sbjct: 46 KLFTPGERVAIGASGGKDSTVLAHTMKTL-NDRYNYGLDLFLLSIDEGISGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + ++S+++ + R + A + I Sbjct: 105 KRNRDTYGLPLKILSYQDLYGWTMDRIVEEVGRKNNCTFCGVFRRQALDRGAALLAVDKI 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ETV M R + + + +PF ++I + Sbjct: 165 ATGHNADDIAETVIMNVLRGDIGRLSRCAAPITGSGEGETIPRVKPFKYAYEKEIVMYAY 224 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 225 FKKLDYFSTECIYSPEAYRGHARAFIKDLE 254 >gi|300123916|emb|CBK25187.2| unnamed protein product [Blastocystis hominis] Length = 1073 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 16/192 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ F L +++ +SGG DS+ +L L + RS K + + ++VD +T Sbjct: 787 QAIGHF-EMLKEGDRVMLGLSGGKDSLTMLHCLLQLQR-RSPTKFELACVTVD---PQTT 841 Query: 67 KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTG-LMAAAREARYALISEHAKTINAT 120 + + D C L + + V++ K + G + + + ++ + Sbjct: 842 GFDPSPLRDYCKALGVKYFYESRAVIALAKKKLKNGSICSWCSRMKRGILYSTMRREKYN 901 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 +++ A DD E+ M + + M + + ++ + RPF+ R + +R F Sbjct: 902 VLVLAQHLDDLAESFLMSVFHNGVLRTMKACYLNK----EEDIRVIRPFVYVREKQLREF 957 Query: 181 LLQRNISWCEDP 192 N+ D Sbjct: 958 AKSMNLP-IIDE 968 >gi|212696526|ref|ZP_03304654.1| hypothetical protein ANHYDRO_01064 [Anaerococcus hydrogenalis DSM 7454] gi|212676462|gb|EEB36069.1| hypothetical protein ANHYDRO_01064 [Anaerococcus hydrogenalis DSM 7454] Length = 143 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 7/103 (6%) Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + K I AH DDQ ETV MR R G+ N I R Sbjct: 2 NFLIRLKKNYKNAKIAVAHNMDDQAETVLMRIIRGSGLDGLKAMDYK-------NGPIIR 54 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 P + ++ I FL I + D +N + R ++R + Sbjct: 55 PIMDFKKSQILKFLDYNKIDYHIDYTNLQRDYTRNKIRLDIIP 97 >gi|307718371|ref|YP_003873903.1| PP-loop domain-containing protein [Spirochaeta thermophila DSM 6192] gi|306532096|gb|ADN01630.1| PP-loop domain protein [Spirochaeta thermophila DSM 6192] Length = 276 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 78/217 (35%), Gaps = 14/217 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYV 73 L +L+ +SGG DS+ + + L S+ A+ ++ E + +E + Sbjct: 38 LREGDRVLLGISGGKDSLVMALVL-SLRRRWLPIHYHLEAVHLN--WEEYPISDEESARL 94 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + ++ + Q AR R + + K + ++ H D Sbjct: 95 AAYFEAIDVPFTQITTTMFPGHYDGQFNCYLCARN-RKRHLFTYMKEYDIPILALGHHLD 153 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET + A +G + M + + RP +R+ + + + Sbjct: 154 DIVETTLINM----AMRGRLFTMMPVQPFFGGLFTLIRPLCEVPESQVRTAVEKLGLPVV 209 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D R+RV+ V + + K ++ L Sbjct: 210 KPDCPYKDTNLRLRVKPLVEQLATLDPLAREKIYRSL 246 >gi|297828145|ref|XP_002881955.1| hypothetical protein ARALYDRAFT_483552 [Arabidopsis lyrata subsp. lyrata] gi|297327794|gb|EFH58214.1| hypothetical protein ARALYDRAFT_483552 [Arabidopsis lyrata subsp. lyrata] Length = 355 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 14/222 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +S+D Sbjct: 42 FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 161 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 219 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 260 >gi|222537719|ref|NP_660275.2| cytoplasmic tRNA 2-thiolation protein 1 [Homo sapiens] gi|74713747|sp|Q7Z7A3|CTU1_HUMAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cancer-associated gene protein; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|31075485|gb|AAP42277.1| cancer-associated gene protein [Homo sapiens] gi|119592390|gb|EAW71984.1| ATP binding domain 3 [Homo sapiens] gi|158255782|dbj|BAF83862.1| unnamed protein product [Homo sapiens] Length = 348 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256 >gi|157877802|ref|XP_001687200.1| hypothetical protein [Leishmania major strain Friedlin] gi|68130275|emb|CAJ09587.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 322 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I++ R F P + +A SGG DS L+ L ++ + R I+ +S+D Sbjct: 42 DTIQAERLFA-----PGDV-IACGASGGKDSTVLIHLLDTL-NKRHDYGIRIELVSIDEG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S+++ R + Sbjct: 95 IAGYRDDSLETVKRNSTCYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169 + A + A I T H DD ET+ M R A + LS + + +P Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R VR V+D++ Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKDAFRGTVRTLVKDLE 254 >gi|157128941|ref|XP_001661559.1| cancer-associatedprotein protein [Aedes aegypti] gi|122116943|sp|Q16QI1|CTU1_AEDAE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|108872434|gb|EAT36659.1| cancer-associatedprotein protein [Aedes aegypti] Length = 341 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + IE + F R V + +A SGG DS L L VL++R +K +S+D + Sbjct: 39 NTIEQNKLFRRGDV----VAIAASGGKDSTVLAHVLK-VLNERYDYGLKLVLLSIDEGIT 93 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112 D + V + ++S+ ++ R + Sbjct: 94 GYRDDSLETVKRNRDDYGMELKILSYDELYGWTMDKIVSKIGRSNNCTFCGVFRRQALDR 153 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + + T H DD ETV M R + + ++ +P Sbjct: 154 GARLMEVDCVATGHNADDIAETVLMNILRGDTARLRRCCDIKTGGKDADSIPRVKPLKYA 213 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 214 YEKEIVMYAHFKKLVYFSTECVFAPNAYRGHARAFLKDLE 253 >gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] gi|319436953|gb|EFV92004.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4] Length = 223 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 26/219 (11%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AHT DDQ ETV + R + + D RP L R D R+ Sbjct: 9 VLLAHTLDDQAETVLLGLGRGSGARSLRGMAAWDAPW-------GRPLLGVRAADTRAAC 61 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 L ++W +DP NTD + RVRVRR V + L + + ++ + + Sbjct: 62 LGLGLTWWDDPHNTDPTYTRVRVRREVLPLLEEVLGGGVAEGLARTAELARVDDDELDRL 121 Query: 242 L-TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----- 294 V + A+ L + + +L +LR G ++ P Y + V + Sbjct: 122 AGDVPVGDDGALDVGRLERLPAAVLTRVLRRWLLSRG--VTSPTYAHLTAVAALVTDWRG 179 Query: 295 ----------KSGKRGCVSIGRVVIDRRANFLWITRAVR 323 +G RG R+V RR L + Sbjct: 180 QGGVAVGGTGPAGTRGAGPTARLVARRRHGKLVLENERA 218 >gi|71408111|ref|XP_806478.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70870240|gb|EAN84627.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 329 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 16/203 (7%) Query: 23 LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +VA SGG DS L+ + +L++R ++ +S+D + D ++ V + Sbjct: 54 VVACGASGGKDSTVLMHLMK-LLNERHGYGVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112 Query: 81 RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + V+S+K R + A + AT I+T H D Sbjct: 113 ELPLRVMSYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D ET+ M R + D + +P ++I + + + + Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230 Query: 190 EDPSNTDDRFERVRVRRFVRDID 212 + R R +++++ Sbjct: 231 TTECSYSREAFRSEARTLLKEME 253 >gi|302565142|ref|NP_001181634.1| cytoplasmic tRNA 2-thiolation protein 1 [Macaca mulatta] Length = 348 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRALTPRLG---ISLQLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256 >gi|58267828|ref|XP_571070.1| mitochondrion protein [Cryptococcus neoformans var. neoformans JEC21] gi|134112329|ref|XP_775140.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var. neoformans B-3501A] gi|74684970|sp|Q5KGC1|CTU1_CRYNE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|50257792|gb|EAL20493.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227304|gb|AAW43763.1| mitochondrion protein, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 363 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L SVL+ R + +S+D + D + V Sbjct: 51 RGERVAIGASGGKDSTVLAHVL-SVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQ 109 Query: 78 SRLRIAHSVVS------WKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + ++S W K + R + A + I+T H Sbjct: 110 AEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCTFCGVFRRQALDRGAAQLGVDHIVTGH 169 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + T + + S+PF ++I + + + Sbjct: 170 NADDIAETVLMNIMRGDIARLA--RCTAVTTQSEDTIKRSKPFKYAYEKEIVMYAYFKKL 227 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 ++ R R F++D++ Sbjct: 228 TYFSTECIYSPDAYRGHARVFLKDLE 253 >gi|261332966|emb|CBH15961.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 462 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 17/212 (8%) Query: 15 SLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 L P I VA SGG DS L+ + +L+++ I+ +S+D + D ++ Sbjct: 173 KLFKPGDI-VACGASGGKDSTVLIHLMK-LLNEQHEYGIQLLLLSIDEGIAGYRDDSLKT 230 Query: 73 VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121 V ++ V+S+K R + A + AT Sbjct: 231 VHRNAEVYNLSLRVLSYKELYGWTMDEVVKVTGLRSSCTYCGVFRRQALDRGAAMLGATK 290 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++T H DD ET+ M R + + L +P ++I + Sbjct: 291 VVTGHNADDLAETILMNILRGDLPRLS--RCTSAITSGESLLPRVKPLKYAYEKEIVLYA 348 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213 + + + R R +++I++ Sbjct: 349 HFKKLDYFTTECTYSKEAFRSEARTLLKNIEI 380 >gi|68466155|ref|XP_722852.1| hypothetical protein CaO19.12104 [Candida albicans SC5314] gi|68466448|ref|XP_722706.1| hypothetical protein CaO19.4634 [Candida albicans SC5314] gi|74587732|sp|Q5AML2|CTU1_CANAL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|46444696|gb|EAL03969.1| hypothetical protein CaO19.4634 [Candida albicans SC5314] gi|46444852|gb|EAL04124.1| hypothetical protein CaO19.12104 [Candida albicans SC5314] Length = 395 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 66 RGEKIAIGASGGKDSTVLASILKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLATVKRNQ 124 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + +VS+K+ + A R + A+ + ++T H Sbjct: 125 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHVVTGH 184 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + T + S+PF +++I + + + Sbjct: 185 NADDVAETVLMNLLRGDVARLESSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 243 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++ ++ Sbjct: 244 DYFSTECTYAPEAFRGTARELLKSLE 269 >gi|226711431|sp|B3LHQ7|CTU1_YEAS1 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1; AltName: Full=Needs CLA4 to survive protein 6; AltName: Full=Thiolation of uridine in cytoplasmic tRNA protein 1 gi|226711432|sp|A6ZTX8|CTU1_YEAS7 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1; AltName: Full=Needs CLA4 to survive protein 6; AltName: Full=Thiolation of uridine in cytoplasmic tRNA protein 1 gi|151943606|gb|EDN61916.1| protein with a role in urmylation and in invasive and pseudohyphal growth [Saccharomyces cerevisiae YJM789] gi|190407148|gb|EDV10415.1| VEG136 protein [Saccharomyces cerevisiae RM11-1a] gi|259146303|emb|CAY79560.1| Ncs6p [Saccharomyces cerevisiae EC1118] Length = 359 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + V SGG DS L L +L+DR I+ +S+D + D + V Sbjct: 64 FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + S+K+ R + A + + ++T Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182 H DD ETV M R + L I I R PF +++I + Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++++++ Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269 >gi|50593215|ref|NP_011304.2| Ncs6p [Saccharomyces cerevisiae S288c] gi|115502422|sp|P53088|CTU1_YEAST RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1; AltName: Full=Needs CLA4 to survive protein 6; AltName: Full=Thiolation of uridine in cytoplasmic tRNA protein 1 gi|285812005|tpg|DAA07905.1| TPA: Ncs6p [Saccharomyces cerevisiae S288c] Length = 359 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + V SGG DS L L +L+DR I+ +S+D + D + V Sbjct: 64 FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + S+K+ R + A + + ++T Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182 H DD ETV M R + L I I R PF +++I + Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++++++ Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269 >gi|1655726|gb|AAC49498.1| unknown [Saccharomyces cerevisiae] Length = 317 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + V SGG DS L L +L+DR I+ +S+D + D + V Sbjct: 64 FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + + + S+K+ R + A + + ++T Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182 H DD ETV M R + L I I R PF +++I + Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++++++ Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269 >gi|118151018|ref|NP_001071422.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus] gi|122145554|sp|Q0VC66|CTU1_BOVIN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|111305255|gb|AAI20330.1| ATP binding domain 3 [Bos taurus] gi|296477482|gb|DAA19597.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus] Length = 347 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L + I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ISLHLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++ + + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT ++T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHVVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKMLE 256 >gi|154417532|ref|XP_001581786.1| hypothetical protein [Trichomonas vaginalis G3] gi|121916016|gb|EAY20800.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 275 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 18/208 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---D--HCLRETAKD 68 LV P IL+ +SGG DS+ L L ++ +++F K A + + + + Sbjct: 23 HLVEPGDRILIGLSGGKDSLTLTHFLSELMREKNFA-FKVVAAHIKFKNLPYGI------ 75 Query: 69 EVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + +Y+ D C ++ + + R A + E A+ + + Sbjct: 76 DAQYLQDFCESRQVEYHLVEDNIREVYLENDHKETCIHCSRFRRAKLMELARVFSCNKLT 135 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD + T+ M M + N+ + RP DI+ F ++ Sbjct: 136 LGHHLDDIVATLIMNMTHHGRFSSMAVKLDITAGEEKYNMTMIRPLAYTPELDIKQFCVE 195 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI 211 + D R + R V DI Sbjct: 196 NEFQPAKCRCPWGDTGIRSQTRAAVDDI 223 >gi|319901513|ref|YP_004161241.1| PP-loop domain protein [Bacteroides helcogenes P 36-108] gi|319416544|gb|ADV43655.1| PP-loop domain protein [Bacteroides helcogenes P 36-108] Length = 253 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + K A V + + + V Y+ + Sbjct: 31 GDKILIGLSGGKDSLALVELLAR-RARIYKPKFSVVAAHVVMKN--IPYQSD--VHYLRE 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + + + R + AK I H DD L Sbjct: 86 YAESWEVPFILYETEFDPVTDIRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G S + ++ I RP D+ R Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLAMKKFDMTIIRPMCLVHEVDLLELAQMRK 194 >gi|313239749|emb|CBY14633.1| unnamed protein product [Oikopleura dioica] Length = 771 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 29/253 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLR 63 +++ F + ++V +SGG DSM LL AL A++VD Sbjct: 511 DAIEEF-EMIKNGDRVIVGLSGGKDSMTLLHALLQYRHIAKHTLKMDFTIGALTVD---- 565 Query: 64 ET-AKDEVRYVSDVCSRLRIAH------SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 A + + + L + + + + + + + ++ + Sbjct: 566 PQVASYDPSSLIEYMQELGVEYLYKEEPIFANAQKLPDLRSICSYCSRMKRGIMYSAMRE 625 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 N ++ DD E+ M + + + + + +L + RP R + Sbjct: 626 SNWNVLALGQHLDDCAESFLMSAFHNSQL----FTMKANYTVKAGDLRVIRPLAFVRETE 681 Query: 177 IRSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 R+F + P N F ER R+++ + ++ +L F L+ + Sbjct: 682 TRAFAESNKLPVI--PENCPACFSEPKERNRMKQLLAQQEILHPHL----FHSLKKTLRP 735 Query: 233 AVAMLIPKYLTVH 245 + M I ++ + Sbjct: 736 LLGMAIGEHFSKD 748 >gi|302344097|ref|YP_003808626.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075] gi|301640710|gb|ADK86032.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075] Length = 256 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 15/181 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + + + +SGG DS+GLL L R + + + + +D +V + Sbjct: 20 RMIAEGDKVALGLSGGKDSLGLLWLLRE-RMRRIPIEFELTPMHIDMGF---GNVDVAAL 75 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAH 126 C+ L + V R A + + + + AH Sbjct: 76 RRFCAELGLDLLVFESDFGPRAHSPENRKNSPCFFCALKRRAQMFKMCREHGCNKLALAH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ET M G + + L+ L I RP + R F + + Sbjct: 136 HQDDIFETFLMNIL----HAGNISTMLPVQALFRGELKIIRPLSLIGADQTRRFAQVKEL 191 Query: 187 S 187 Sbjct: 192 P 192 >gi|73947845|ref|XP_854565.1| PREDICTED: hypothetical protein XP_849472 [Canis familiaris] Length = 238 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 20/192 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L + + ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---VSLRLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 + + +VV++ + + A AR R + E A+ + Sbjct: 103 RRQAALWDLPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSRGEGGA-LPRCRPLQLASQKEV 221 Query: 178 RSFLLQRNISWC 189 + R + + Sbjct: 222 VLYAHFRRLDYF 233 >gi|171185906|ref|YP_001794825.1| PP-loop domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935118|gb|ACB40379.1| PP-loop domain protein [Thermoproteus neutrophilus V24Sta] Length = 329 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 28/207 (13%) Query: 3 LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 ++++R L+ P + VAVSGG DS+ LL L L +K A +++ Sbjct: 34 RKVLDTIRR--HRLIEPGDYVAVAVSGGKDSLVLLYMLGRFLQRGLLKDVKMEAFTINEG 91 Query: 62 LRETA------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------ 103 + K + YV ++ +L I ++V S+K+ T + A Sbjct: 92 -HPYSCFYRMAKRD--YVRELAGKLGIEYNVYSFKDIFGVTAMELAENLSKRGHEVHMCT 148 Query: 104 ---EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160 R +++ T I TAH DD+ +TV M + G + Sbjct: 149 IDGVLRRRVMNIIGSRRGWTKIATAHNLDDEAQTVLMNVLMGNLSRFR-WYGRHEDAEEK 207 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187 + +P R E++ + I Sbjct: 208 DLIPRIKPLKYVREEEVAIYAYYHGIP 234 >gi|309775465|ref|ZP_07670467.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916761|gb|EFP62499.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 317 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I V VSGG DSM LL ALH +DR+F + I + V Sbjct: 23 GDRIAVGVSGGKDSMVLLTALHMYSKFADRNF---EVVGIHIKLGF-PNMDF--SKVEAF 76 Query: 77 CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C I ++ K + + + A + + AK ++ T + H Sbjct: 77 CKEQGITFHQFDSKVYEILKRNPDKEGRIKCSLCSKFKKATVIDAAKKLSCTKVAFGHHS 136 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET+ M + G + + + + RP + +I S L + NI + Sbjct: 137 DDAVETLLMNAIHG----GKLATFLPKMYMSRTDTTFIRPLVYSYESEILSALTRNNIPF 192 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 + + +D + R+ ++D+ L Y K Q + + + + ++ Sbjct: 193 VK-STCPNDGYTE---RQAMKDM-LQDFYNKYPMAQKNFIHMLYNEDQVELWHREGDHKA 247 Query: 249 IIAISQDILNIDSTLLFYLLRVSAA 273 A S +L + L R AA Sbjct: 248 EKAKSMSVL-LKEEGSLQLARHGAA 271 >gi|189189368|ref|XP_001931023.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972629|gb|EDU40128.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase) [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 570 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 34/190 (17%) Query: 87 VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146 ++W++ AR RY + + + T +M H DDQ ETV MR Sbjct: 11 LTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMRLSNYRLRS 70 Query: 147 GMGLSGMCDTIL---------------------------YDLNLWISRPFLRCRREDIRS 179 G+ + I + + RP L + + + Sbjct: 71 GLQAMQRVEWIPECEGIYGVYHSGRGQKPDPDLDIPFLVEQGGIQVLRPLLGFEKARLIA 130 Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232 ++ + W ED +N R +R ++ + + +L Q+ + Sbjct: 131 TCEEKKVGWAEDQTNQIQSLTSRNAIRHLYKNYRLPQALSVPSLVDLSIHMQERINWHKD 190 Query: 233 AVAMLIPKYL 242 + L+ + L Sbjct: 191 SAHELLDQCL 200 >gi|294659301|ref|XP_002770568.1| DEHA2G02728p [Debaryomyces hansenii CBS767] gi|226711415|sp|B5RV24|CTU1_DEBHA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|199433857|emb|CAR65903.1| DEHA2G02728p [Debaryomyces hansenii] Length = 377 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 77/212 (36%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L ++ ++R +++ +S+D ++ D + V Sbjct: 57 NLFQPGDKVAIGASGGKDSTVLASVLKTL-NERYDYRLELVLLSIDEGIKGYRDDSLATV 115 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 ++ +A ++S+K+ R + A + + Sbjct: 116 KRNQAQYNMALEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLGINHV 175 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + L C + I R PF +++I + Sbjct: 176 VTGHNADDMAETVLMNLLRGDTAR---LEKSCTILTQSTGSPIKRSKPFKYSYQKEIVLY 232 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R ++ ++ Sbjct: 233 AHYKKLDYFSTECSYAPEAFRGTARELLKSLE 264 >gi|289622679|emb|CBI50948.1| unnamed protein product [Sordaria macrospora] Length = 403 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L YP + + SGG DS L L ++ ++R + +S+D ++ D + V Sbjct: 46 KLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + AK ++ + Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVQTIGKKGNCTYCGVFRRQALDRGAKMLDIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ET+ M R + L+ + + D + + R P ++I + Sbjct: 165 VTGHNADDVAETILMNLLRGDMGR---LARSTNIVTGDASSDVKRSKPLKYAYEKEIVMY 221 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++ ++ Sbjct: 222 AYHKKLDYFSTECIYSPEAFRGTARGLIKQLE 253 >gi|169869354|ref|XP_001841243.1| mitochondrial protein [Coprinopsis cinerea okayama7#130] gi|116497643|gb|EAU80538.1| mitochondrial protein [Coprinopsis cinerea okayama7#130] Length = 344 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 95/299 (31%), Gaps = 28/299 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L + ++ ++R ++ +S+D + D + V Sbjct: 32 KLFKPGDRVAIGASGGKDSTVLAYVMKTL-NERYQYGLELFLLSIDEGITGYRDDSLETV 90 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+ + R + A +N I Sbjct: 91 KRNQQQYDMPLKILSYDELYGWTMDAIVSQVGRKNNCTFCGVFRRQALDRGAAMLNVDHI 150 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + G C +I + I R PF ++I + Sbjct: 151 VTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTEGEDTIRRSKPFKYAYEKEIVMY 206 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNA 233 + + + R R F++D++ + +K Sbjct: 207 AYFKKLDYFSTECIYSPDAYRGHARAFLKDLEAARPSAIIDIIHSGEAFEVKEEIKATQK 266 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL--RVSAAICGGQISLPGYRSMERV 290 V + + ++ + ++ + + R + Q P ++ ++ Sbjct: 267 VQQTCQRCGYMSSNALCKACTLLEGLERGMANAGITDRGQKQLLQAQAEGPAPETLRKI 325 >gi|304315308|ref|YP_003850455.1| ATPase [Methanothermobacter marburgensis str. Marburg] gi|302588767|gb|ADL59142.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg] Length = 290 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 13/211 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 H+ VA+SGG DS+ L L + + F + +AI+VD + + V + Sbjct: 35 RGEHVAVALSGGKDSVLTLHVLSDLREELDF---ELTAITVDEGIEGYRGEGVLAARENA 91 Query: 78 SRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 R+ S+++ + R +++ A+ I A+ I T H Sbjct: 92 RIRRVELIEKSFRDEFNFELEDVLEGFRSPCIPCGVFRRWILNRTAREIGASKIATGHNM 151 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD++++ M R K I + I +P ED+R + ++ + Sbjct: 152 DDEVQSFIMSLARGDVRKFSKFGPKLQRIHPRMVPRI-KPLWSTPEEDVRLWAELNDVKF 210 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 P R R +R F+ I+ + +K Sbjct: 211 HSAPCPYSSRSMRAGIRDFLNRIESDSPGVK 241 >gi|16082141|ref|NP_394578.1| hypothetical protein Ta1119 [Thermoplasma acidophilum DSM 1728] gi|10640432|emb|CAC12246.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 314 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 22/233 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I VA+SGG DS L LH +LS R ++ +A +VD + + + L Sbjct: 50 RISVAISGGKDSSVTLYLLHKILSKRR--NVELTAFTVDEGISGYRPAGLESAIKLTKML 107 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFD 129 + HS++ +++S T +A R LI+E A+ NA + D Sbjct: 108 GVDHSIIRFQDSFGMTLDSIVGADASRIPCSYCGPLRRKLINEMAERQNADYVALGLNLD 167 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +++ M + ++ + +S + D + P +++ + + I + Sbjct: 168 DYSQSILMNVAKGDYDRLLRMSPQKE--AKDGLVRRIAPLRSVLEKEVVLYAVINGIPF- 224 Query: 190 EDPS--NTDDRFERVRVRRFVRDIDLHALYLK---MKKFQDLRVKVNNAVAML 237 D S R +R R V + + K +K F+ R V L Sbjct: 225 -DSSWCPYYSRAQRNIFREVVNTLSEYNPSTKFSILKFFERARSDVQRNDKAL 276 >gi|224142149|ref|XP_002324421.1| predicted protein [Populus trichocarpa] gi|222865855|gb|EEF02986.1| predicted protein [Populus trichocarpa] Length = 461 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 17/180 (9%) Query: 131 QLETVYMRSQRDYAEKGMGLS-----------GMCDTILYDLNLWISRPFLRCRREDIRS 179 Q E +R R+ G+ + + + I RP L +E + Sbjct: 2 QAELFILRLSRNSGVLGLAGMAFTSQMFSKSTHLYREGSKNKGILIVRPLLHFSKEILYK 61 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235 + W EDP+N + + R R+R + ++ L + + R V+ Sbjct: 62 ICQESGQDWVEDPTNQNTVYARNRIRMSLGNLSSYTFQSELQGVISACRRTRAYVDQICN 121 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLF 293 LI + +T+ I +ILN L + A I Q + P S +++L Sbjct: 122 NLINQAVTIIDHGYAIIDLEILNPSKVTDICLSKFVALILQYVSQRNRPIRGSTSKLLLH 181 >gi|45191038|ref|NP_985292.1| AER437Cp [Ashbya gossypii ATCC 10895] gi|74693248|sp|Q755T1|CTU1_ASHGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|44984106|gb|AAS53116.1| AER437Cp [Ashbya gossypii ATCC 10895] Length = 373 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 13/210 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + V SGG DS L L +L++R ++ +S+D + D + V Sbjct: 60 KLFQRGERVAVGASGGKDSTVLAYILK-LLNERHDYGLEIVLLSIDEGIVGYRDDSLATV 118 Query: 74 SDVCSRLRIAHSVVSWKN----SKPQTGLMAAARE-------ARYALISEHAKTINATLI 122 + + +VS+K+ + + A R R + A ++ + Sbjct: 119 KRNQEQYGLPLKIVSYKDLYDWTMDEIVACAGMRNSCTYCGVFRRQALDRGAAMLDIHHV 178 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T + S+PF +++I + Sbjct: 179 VTGHNADDMAETVLMNILRGDVARLEKSTAIL-TQSSGSPVKRSKPFKYAYQKEIVLYAH 237 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R +++++ Sbjct: 238 YKKLDYFSTECSYAPEAFRGTARELMKNLE 267 >gi|41055997|ref|NP_956424.1| cytoplasmic tRNA 2-thiolation protein 1 [Danio rerio] gi|82177120|sp|Q803X1|CTU1_DANRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|28277535|gb|AAH44158.1| Zgc:55395 [Danio rerio] gi|161611950|gb|AAI55785.1| Zgc:55395 protein [Danio rerio] gi|182888740|gb|AAI64148.1| Zgc:55395 protein [Danio rerio] Length = 343 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L + +L++R +K +SVD + D + V + Sbjct: 53 VAIGASGGKDSTVLAHVMK-LLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYE 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A +N I T H DD Sbjct: 112 LPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + + + + D + +P ++I + + + + Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTSSEGDGAIPRCKPLKYAYEKEIVLYAYFKKLDYFS 231 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 232 TECIYSPNAYRGHARAFLKDLE 253 >gi|307175621|gb|EFN65530.1| ATP-binding domain-containing protein 3 [Camponotus floridanus] Length = 336 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 18/243 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++R + +S+D + D ++ V Sbjct: 45 KLFKPGNKVAIGASGGKDSTVLAYVLKTL-NERHKYGLDLFLLSIDEGITGYRDDSLKTV 103 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + I ++S+K + R + A + I Sbjct: 104 AQNRDDYGIPLKILSYKELYGWTMDSIVTEIGRKNNCTFCGVFRRQALDRGAAILGVDCI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181 +T H DD ETV M R + L I + + +P ++I + Sbjct: 164 VTGHNADDIAETVLMNVLRGDIAR---LQRCTSVITAGADSIMRCKPLKYAYEKEIVMYA 220 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPK 240 +++ + R R F++D++ + +++V +++ M + Sbjct: 221 YFKHLVYFSTECVYAPNAYRGHARAFLKDLEKIRPSSIIDIIHSGEQLQVKDSIKMPERR 280 Query: 241 YLT 243 T Sbjct: 281 NCT 283 >gi|297462107|ref|XP_002701984.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos taurus] gi|297485927|ref|XP_002695276.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos taurus] gi|296477390|gb|DAA19505.1| cytoplasmic tRNA 2-thiolation protein 1-like [Bos taurus] Length = 347 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L + I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ISLHLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++ + + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT ++T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHVVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKMLE 256 >gi|325958250|ref|YP_004289716.1| hypothetical protein Metbo_0492 [Methanobacterium sp. AL-21] gi|325329682|gb|ADZ08744.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21] Length = 311 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 18/184 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+ +SGG DS+ LL L ++ ++ G I A+++D + ++ V Sbjct: 48 KGDKVLLGLSGGKDSVMLLDILSTL---KNRGIIDLVAVTIDEGIEGYREEGVELAIKNA 104 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREA-------RYALISEHAKTINATLIM 123 + + H VVS+K + Q + R A R + + +K + AT I Sbjct: 105 EKYGVEHRVVSFKQYFGTTLDKIIQNNSLDVRRNACTYCGVFRRWIFNRVSKEVGATKIA 164 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ +++ M + + + + I +P ++I +++ Sbjct: 165 TGHNLDDETQSIVMSYLEGNIQNLTRIGPKSQSKSDKFTVKI-KPLREIPEKEIGLYVIA 223 Query: 184 RNIS 187 + + Sbjct: 224 KELD 227 >gi|257468397|ref|ZP_05632491.1| PP-loop domain protein [Fusobacterium ulcerans ATCC 49185] gi|317062670|ref|ZP_07927155.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313688346|gb|EFS25181.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 253 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 42/253 (16%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-------------DRSFGK 50 SP+ + I V VSGG DS+ L AL + + K Sbjct: 26 SPVGRAMHKYNMIEAGDRIAVGVSGGKDSLTTLNALVRIKKIANIDFEIIPIHIHPNIDK 85 Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYA 108 F I +Y + +L++ H+ +S K R Sbjct: 86 ASFEVI-------------EKYCEKLGLKLQVEHTNLSDMLFGEKEVKNPCFLCGRIRRG 132 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 ++ K + H DD +ET M +G + + + + RP Sbjct: 133 ILYRMMKEQGVNKLALGHHKDDIIETFLMNVF----YQGNMKMMKPCYLSEEYGVTVIRP 188 Query: 169 FLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +DI ++ + + + P + R+RV+ +++I L +D+ Sbjct: 189 LAFVEEKDIIRYVNKLELPVVKSDCPYEVSENSRRLRVKNLIKEISLEN--------KDV 240 Query: 227 RVKVNNAVAMLIP 239 R + N++ L+ Sbjct: 241 RSVIFNSIKELLD 253 >gi|289742235|gb|ADD19865.1| uncharacterized conserved protein [Glossina morsitans morsitans] Length = 348 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 16/210 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A SGG DS L L +L+ R ++ +S+D + D + V Sbjct: 49 SGQKVAIAASGGKDSTVLAHIL-RLLNQRYNYGLELVLLSIDEGITGYRDDSLETVKKNR 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 ++ ++S++ +T R + AK + I T H Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRTNNCTFCGVFRRQALDRGAKLLKVDSIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 DD ETV M R + +G D + ++ +P ++I + Sbjct: 168 NADDIAETVLMNILRGDTARLRRCTDIKTGSNDDSSNENSIPRVKPLKYAYEKEIVMYAH 227 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 228 YKKLIYFSTECVFAPNAYRGHARTFLKDLE 257 >gi|198424860|ref|XP_002119654.1| PREDICTED: similar to predicted protein [Ciona intestinalis] Length = 983 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 19/238 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISV 58 +F I+++ F + + +LV +SGG DS+ +L LH I + A+++ Sbjct: 727 LFKLSIKAINDF-KMIKDKDKVLVCLSGGKDSLSMLHVLHQYQYQAGSNNIHFELGAVTI 785 Query: 59 DHCLRE-TAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112 D + + L I + ++ S + + + + I Sbjct: 786 D----PMNPSFDPSPLIPYMKSLNIEYFYEKQGIMDQATSVNASSVCSFCSRMKRGRIYA 841 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ AH DD ET M G+ + + + +L + RPF+ Sbjct: 842 AARREGWNVLAFAHHLDDLAETFLM----SAFHNGLLHTMKAHYTIKEGDLRVIRPFIYV 897 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 R + R F + P N FE + R V+ + L + F LR + Sbjct: 898 RETETRKFAETALLPVI--PENCPACFEAPKERHRVKQLLASQEILHPRMFFSLREAL 953 >gi|156848278|ref|XP_001647021.1| hypothetical protein Kpol_1050p20 [Vanderwaltozyma polyspora DSM 70294] gi|226711430|sp|A7TER7|CTU1_VANPO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|156117704|gb|EDO19163.1| hypothetical protein Kpol_1050p20 [Vanderwaltozyma polyspora DSM 70294] Length = 363 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 17/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + V SGG DS L L +L++R I+ +S+D + D + V Sbjct: 65 RGERVAVGASGGKDSTVLAYVLK-LLNERHDYGIEIVLLSIDEGIVGYRDDSLATVKRNQ 123 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ + S+++ + R + A + ++T H Sbjct: 124 QQYQLPLEIFSYQDLYDWTMDDIVETAGIRNSCTYCGVLRRQALDRGAAKLEIKHVVTGH 183 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + L + I R PF C +++I + + Sbjct: 184 NADDMAETVLMNILRGDVAR---LEKSTSIMTSSTGSPIKRSKPFKYCYQKEIVLYAHYK 240 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R +++ + Sbjct: 241 KLDYFSTECTYAPEAFRGTARELMKNFE 268 >gi|225712834|gb|ACO12263.1| ATP-binding domain-containing protein 3 [Lepeophtheirus salmonis] gi|290561359|gb|ADD38080.1| Cytoplasmic tRNA 2-thiolation protein 1 [Lepeophtheirus salmonis] Length = 337 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 15/212 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ +DR + +S+D + D + V Sbjct: 46 KLFTPGERVAIGASGGKDSTVLAHTLKTL-NDRYSYGLDLFLLSIDEGISGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 ++ ++S+++ + R + A + I Sbjct: 105 KRNRDTYKLPLKILSYEDLYGWTMDRIVQEVGRKNNCTFCGVFRRQALDRGAALLKVNKI 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180 T H DD ET+ M R + + I +PF ++I + Sbjct: 165 ATGHNADDIAETIMMNVLRGDVGRLSRCAAPITGSNLGEGETIPRVKPFKYAYEKEIVMY 224 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 225 AYFKKLDYFSTECIYSPEAYRGHARAFIKDLE 256 >gi|145360979|ref|NP_181956.2| ATP binding [Arabidopsis thaliana] gi|226711456|sp|O64862|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|26449617|dbj|BAC41934.1| unknown protein [Arabidopsis thaliana] gi|30725380|gb|AAP37712.1| At2g44270 [Arabidopsis thaliana] gi|330255305|gb|AEC10399.1| cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] Length = 355 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 14/222 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +S+D Sbjct: 42 FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 161 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 219 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 260 >gi|261187399|ref|XP_002620124.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis SLH14081] gi|239594688|gb|EEQ77269.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis SLH14081] Length = 421 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L YP + + SGG DS L L ++ ++R ++ +S+D + + + V Sbjct: 46 ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDNSLETV 104 Query: 74 SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +V + + G R + A + + Sbjct: 105 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T ++ S+P ++I + Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 223 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++D++ Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|198458643|ref|XP_001361116.2| GA20807 [Drosophila pseudoobscura pseudoobscura] gi|226711465|sp|Q28ZC1|CTU1_DROPS RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|198136413|gb|EAL25692.2| GA20807 [Drosophila pseudoobscura pseudoobscura] Length = 343 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 75/220 (34%), Gaps = 21/220 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I S + F R + VA SGG DS L + +L++R ++ +S+D + Sbjct: 41 ITSSKLFRR----GEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLELVLLSIDEGITGY 95 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHA 114 D + V ++ ++S++ ++ R + A Sbjct: 96 RDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCTFCGVFRRQALDRGA 155 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172 K + I T H DD ETV M R + L D I +P Sbjct: 156 KLLCVDSIATGHNADDIAETVLMNVLRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYS 212 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 213 YEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|330803939|ref|XP_003289958.1| hypothetical protein DICPUDRAFT_154434 [Dictyostelium purpureum] gi|325079956|gb|EGC33533.1| hypothetical protein DICPUDRAFT_154434 [Dictyostelium purpureum] Length = 1086 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 19/183 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77 I+V VSGG DS+ L+ L + RS K A +VD + D + + Sbjct: 838 GDKIMVGVSGGKDSLTLINTLIDI-KRRSKVKFTIGACTVD----PQSPDYDPSPLKKYF 892 Query: 78 SRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + I + VS + + A R ++ + ++ Sbjct: 893 ASIGIPYFYVSQSIMETAKCIMKEGNKESICAFCSRMRRGILYNTCRKEGYNVLALGQHL 952 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D E+ M G+ + + + ++ I RP R + + Sbjct: 953 NDLSESFLM----SALYNGILSTMKVNYLNEQGDIRIIRPLCNISENQTRHYAKVMGLPV 1008 Query: 189 CED 191 +D Sbjct: 1009 IDD 1011 >gi|328724233|ref|XP_001952568.2| PREDICTED: hypothetical protein LOC100161816 [Acyrthosiphon pisum] Length = 1181 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 25/236 (10%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVDHCLR 63 IE++R F + + I+V +SGG DS+ LL LH S I A +VD Sbjct: 925 IEAIREF-KMIRDGDRIMVCLSGGKDSLSLLHTLHQYQYYASSKGIHFTLGAATVD---- 979 Query: 64 ETAKDEVRY----VSDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHA 114 + Y + L + ++ S + + + + A Sbjct: 980 PGS---AAYNPKPLIPYLKALGVHYLYEEQKILEQAASAECRSICSFCSRMKRGRLYSAA 1036 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 ++ ++ DD E+ M + + + S + + +L + RPF+ R Sbjct: 1037 RSNGYNVLALGQHLDDLAESFLMSTFHNGRLR----SMKAHYAINERDLRVIRPFVYVRE 1092 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + +R F + + N FE + R + + L F LR + Sbjct: 1093 KMLRQFAETKKLPVI--SENCPACFEAPKERHRTKQLLAQQEILFPHLFASLRSAL 1146 >gi|45358916|ref|NP_988473.1| hypothetical protein MMP1353 [Methanococcus maripaludis S2] gi|45047782|emb|CAF30909.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 324 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 42/261 (16%) Query: 2 FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 F E + FV + ILV +SGG DS+ LL L R ++ A++V Sbjct: 55 FEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLL---EPYRRKYGVQIYAVTV 111 Query: 59 DH---CLRE--TAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMA---- 100 D +R + V +++ C L I H +++ S+ G+ Sbjct: 112 DLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCF 171 Query: 101 AAREARYALISEHAKTI----NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCD 155 + R +++ +AK + I HT +D +T+ + K + + + Sbjct: 172 SCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKNFNE 231 Query: 156 TILYDLNLWI-------SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER---VRVR 205 T + + + RP L E I L++ +I + D + + R +R Sbjct: 232 TDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDK--DECPYSRHNGNGIR 289 Query: 206 RFVRDIDLHALYLKMKKFQDL 226 + L ++ + +++ Sbjct: 290 KK-SHEVLESIEEDVPNIREM 309 >gi|308492041|ref|XP_003108211.1| CRE-TUT-1 protein [Caenorhabditis remanei] gi|308249059|gb|EFO93011.1| CRE-TUT-1 protein [Caenorhabditis remanei] Length = 390 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 14/208 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + + SGG DS L + ++ +G + +S+D ++ D + V Sbjct: 73 LQRGERVAIGASGGKDSTVLAYVMKTLNDIHDYG-LDLQLLSIDEGIKGYRDDSLLAVEK 131 Query: 76 VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +++S+ + + R + A I AT ++T Sbjct: 132 NRIEYELPLTILSYNDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVT 191 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + + + +L ++P C DI + Sbjct: 192 GHNADDMAETVLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARTN 249 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R++VRD++ Sbjct: 250 QLEYFYTECIYAPNAYRGYARKYVRDLE 277 >gi|66505934|ref|XP_397328.2| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Apis mellifera] Length = 343 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 16/207 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++ + +G I +S+D + D ++ V Sbjct: 49 SGDKVAIGASGGKDSTVLAYVLKTLNNKYQYG-IDLFLLSIDEGITGYRDDSLKTVQQNK 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + ++S+K + R + A + I T H Sbjct: 108 NDYGLPLKILSYKELYGWTMDEIVAEIGKKNNCTFCGVFRRQALDRGAALLGVDCIATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185 DD ETV M R + L I + + +P ++I + + Sbjct: 168 NADDIAETVLMNILRGDIAR---LQRCTSVITAGADCIRRCKPLKYAYEKEIVMYAYFKQ 224 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 225 LVYFSTECIFAPNAYRGHARTFLKDLE 251 >gi|55378723|ref|YP_136573.1| hypothetical protein rrnAC2005 [Haloarcula marismortui ATCC 43049] gi|55231448|gb|AAV46867.1| unknown [Haloarcula marismortui ATCC 43049] Length = 331 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 28/195 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L LH ++ +I+ A+S+ + + ++ Sbjct: 53 PETWVIGLSGGKDSVVLTQILHDTFAE--DPRIELVALSIHEGIEGYRDASLEACEELTD 110 Query: 79 RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L I H VS ++ A R L+S++A+ ++A ++T H Sbjct: 111 DLGIEHVTVSYAEEFGVQMDDVVEDDPEGMAACAYCGVFRRDLLSKYAEELDADKLLTGH 170 Query: 127 TFDDQLETVYMRSQRD------------YAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172 DD+ ET M + + I R P Sbjct: 171 NLDDEAETALMNFLEGDISQIAKHFEASLGPFDSSADAPTEQTREAQDHHIPRAKPLRDI 230 Query: 173 RREDIRSFLLQRNIS 187 +++ + ++ Sbjct: 231 PEKEVALYARFEDLP 245 >gi|255690098|ref|ZP_05413773.1| PP-loop family protein [Bacteroides finegoldii DSM 17565] gi|260624377|gb|EEX47248.1| PP-loop family protein [Bacteroides finegoldii DSM 17565] Length = 248 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDRILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMTN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C +A ++ + R + AK I H DD L Sbjct: 86 HCEANGVAFVQYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ + Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHESDLIELAALHH 194 >gi|159155715|gb|AAI54794.1| Zgc:55395 protein [Danio rerio] Length = 343 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L + +L++R +K +SVD + D + V + Sbjct: 53 VAIGASGGKDSTVLAHVIK-LLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYE 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A +N I T H DD Sbjct: 112 LPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + + + + D + +P ++I + + + + Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTSSEGDGAIPRCKPLKYAYEKEIVLYAYFKKLDYFS 231 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 232 TECIYSPNAYRGHARAFLKDLE 253 >gi|328855979|gb|EGG05102.1| hypothetical protein MELLADRAFT_36991 [Melampsora larici-populina 98AG31] Length = 341 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 27/221 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R + +A SGG DS L + ++ ++R + +S+D ++ D + Sbjct: 61 ARMFRRGERVAIAASGGKDSTVLAHVMTTL-NERYDYGLDLCLLSIDEGIKGYRDDSLET 119 Query: 73 VSDVCSRLRIAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINAT 120 V S+ + V+S+ + + G R + A + Sbjct: 120 VKRNSSQYSLPLKVLSYDELYQGWTMDKVVENVGRKGNCTFCGVFRRQALDRGANILGVD 179 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEK---------GMGLSGMCDTILYDLNLWISRPFLR 171 I+T H DD ETV M R + G SGM + +PF Sbjct: 180 HIVTGHNADDIAETVLMNVLRGDIARLERCTEITTGGVTSGMGGIPVKRS-----KPFKY 234 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R V++++ Sbjct: 235 AYEKEIVMYAYFKKLDYFSTECTYSPEAYRGHARALVKELE 275 >gi|195581776|ref|XP_002080706.1| GD10105 [Drosophila simulans] gi|194192715|gb|EDX06291.1| GD10105 [Drosophila simulans] Length = 329 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 9/197 (4%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + VA SGG DS L L +L++R ++ +S+D + D + V Sbjct: 49 RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++S++ T R + AK + I T H DD ETV M Sbjct: 108 DDYQMPLKILSYEELYGWTMDRILPRS---DALDRGAKLLGVDSIATGHNADDIAETVLM 164 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 R + L I +P ++I + + + + Sbjct: 165 NVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVF 221 Query: 196 DDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 222 APNAYRGHARAFLKDLE 238 >gi|134096346|ref|YP_001101421.1| C32 tRNA thiolase [Herminiimonas arsenicoxydans] gi|205830596|sp|A4G9W3|TTCA_HERAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|133740249|emb|CAL63300.1| putative ATPase [Herminiimonas arsenicoxydans] Length = 318 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 20/222 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ +R+ K A+++D + ++ Sbjct: 57 GDKIMVCLSGGKDSYALLDILMTL-RERAPIKFDIVAVNLD-QKQPN---FPEHILPAYL 111 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 112 KQLDIPFHIENQDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 +ET ++ G + GM + D I RP + D + +N Sbjct: 172 IMETFFLNMF-----FGAKIKGMPPKLQSDDGKHIVIRPLAYVKEADTERYAQIKNFPII 226 Query: 190 -EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D + + +R +++ +R+ + F L V Sbjct: 227 PCDLCGSQENLQRKQIKNMLREWEKKHPGRVDNIFSSLSTVV 268 >gi|321259441|ref|XP_003194441.1| VEG136 protein [Cryptococcus gattii WM276] gi|317460912|gb|ADV22654.1| VEG136 protein [Cryptococcus gattii WM276] Length = 369 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L SVL+ R + +S+D + D + V Sbjct: 51 RGERVAIGASGGKDSTVLAHVL-SVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQ 109 Query: 78 SRLRIAHSVVS------WKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++S W K + R + A + I+T H Sbjct: 110 LEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCTFCGVFRRQALDRGAAQLGVDHIVTGH 169 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + T + + S+PF ++I + + + Sbjct: 170 NADDIAETVLMNIMRGDIARLA--RCTAVTTQSEDTIKRSKPFKYAYEKEIVMYAYFKKL 227 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 ++ R R F++D++ Sbjct: 228 TYFSTECIYSPDAYRGHARVFLKDLE 253 >gi|195154724|ref|XP_002018269.1| GL16852 [Drosophila persimilis] gi|226711420|sp|B4GHY8|CTU1_DROPE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|194114065|gb|EDW36108.1| GL16852 [Drosophila persimilis] Length = 343 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 21/220 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I S + F R + VA SGG DS L + +L++R ++ +S+D + Sbjct: 41 ITSSKLFRR----GEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLELVLLSIDEGITGY 95 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHA 114 D + V ++ ++S++ ++ R + A Sbjct: 96 RDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCTFCGVFRRQALDRGA 155 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172 + + I T H DD ETV M R + L D I +P Sbjct: 156 RLLCVDSIATGHNADDIAETVLMNVLRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYS 212 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R F++D++ Sbjct: 213 YEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252 >gi|322491207|emb|CBZ26472.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 322 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 24/223 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I++ R F P + VA SGG DS L+ L ++ + R I+ +SVD Sbjct: 42 DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-NKRHDYGIRIELVSVDEG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S+ + R + Sbjct: 95 IAGYRDDSLETVKRNSTCYGLPLHILSYHDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169 + A + A I T H DD ET+ M R A + LS + + +P Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R V+D++ Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254 >gi|225378331|ref|ZP_03755552.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM 16841] gi|225209768|gb|EEG92122.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM 16841] Length = 414 Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 26/230 (11%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D + + Sbjct: 167 ELVKPGDRIAVCISGGKDSMLMAKLFQELKIHNKF-DFEVKFLVMDPGYSPANRKVIE-- 223 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +L I ++ + R + A+ + I H +D Sbjct: 224 -ENARKLNIPITIFESDIFDSVYNIEKSPCYLCARMRRGHLYHFAQELGCNKIALGHHYD 282 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNIS 187 D +ET+ M G + M + + + RP R +DI+++ + Sbjct: 283 DVIETILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNGLH 337 Query: 188 WCEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + + N ++R +RV ++ ++ + Y++ F+ + Sbjct: 338 FIQCACKFTDTCTTCNNEENRSKRVEIKELIKKLKEVNQYVEGNIFKSVE 387 >gi|257451990|ref|ZP_05617289.1| PP-loop domain protein [Fusobacterium sp. 3_1_5R] gi|317058539|ref|ZP_07923024.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] gi|313684215|gb|EFS21050.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R] Length = 248 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 23/236 (9%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SPI + I V +SGG DS+ L AL + + I + Sbjct: 21 SPIGRAMHKYHMIEEGDKIAVGISGGKDSLTTLNALIRIQKIAQVS-FEIIPIHIH---- 75 Query: 64 ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115 + + + C +L + V + + P R ++ + Sbjct: 76 PNTDKASYQKMKEYCEKLGLELVVETTNLEEILFNEENPMKNPCFLCGRIRRGILYRMLQ 135 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD +ET M +G + + + RP + Sbjct: 136 ERKINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191 Query: 176 DIRSFLLQRNISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +I ++ + + C ++ R R++++ + ++ ++ F + Sbjct: 192 NIIRYVNRLELPVTKSDCPYETSEQSR--RLKMKNLIHEMTKDNPNVRSTIFSSIE 245 >gi|254479732|ref|ZP_05093019.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] gi|214034329|gb|EEB75116.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] Length = 310 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 30/217 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + + L ++VA+SGG DS+ L + + VD Sbjct: 30 FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKRL-------GYEVLGFFVDLG 82 Query: 62 L-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------Y 107 + +++ V + C I VV K + A R+ R Sbjct: 83 ITQNDFSPRSREV---VENFCKEHDIPLEVVDLKEKYGKGIPEVAKRQDRICAICGVTKR 139 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWIS 166 L++E+A ++NA + T HT DD + + R D G+ + + Sbjct: 140 HLMNEYALSVNAHALATGHTLDDMAKLLLANLMRWDLHHLAKGIPTLPAEPGFAKK---I 196 Query: 167 RPFLRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 +P ++I +F NI E P + ++ R Sbjct: 197 KPLAFQSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233 >gi|150401226|ref|YP_001324992.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013929|gb|ABR56380.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3] Length = 334 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 44/223 (19%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAK--DEVRY 72 HI+V +SGG DS+ LL L R IK AI+VD + R ++ + Sbjct: 74 PKDHIIVGLSGGKDSLALLHLL---EPYRRKYGIKIYAITVDLNIENNRPWSETNKNMDK 130 Query: 73 VSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKT--- 116 V + C L I H ++ + S+ G+ + R +++ A+ Sbjct: 131 VINHCKNLNIPHKIIGYDQDVVQMSKILSENTKGIEYSPCFSCSVVRRHVLTNFARELFE 190 Query: 117 ----------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-- 164 N I HT +D +T+ + + + +D + Sbjct: 191 KEIQKDEKIDENKIKICFGHTLEDNSDTILANILKGDVIRTLEPLKRFHNSEFDYGKFKV 250 Query: 165 ------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201 + RP L +DI L + ++ + D N + R Sbjct: 251 KLQDCILIRPLLSVSEKDILKALNECDLDYYHDK-NECP-YSR 291 >gi|50550947|ref|XP_502947.1| YALI0D17600p [Yarrowia lipolytica] gi|74634447|sp|Q6C8R5|CTU1_YARLI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|49648815|emb|CAG81139.1| YALI0D17600p [Yarrowia lipolytica] Length = 365 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L +P + + SGG DS L + ++ ++R + F +S+D + D + V Sbjct: 43 NLFFPGERVAIGASGGKDSTVLAHVMKTL-NERYNYGVDFVLLSIDEGIHGYRDDSLETV 101 Query: 74 SDVCSRLRIAHSVVSW-----------KNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + VVS+ R + + + I Sbjct: 102 KRNKVQYDMDLEVVSYSELYGWSMDQIVAQIGNKNNCTYCGVFRRQALDRGSAKLGIAHI 161 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T D + S+P ++I + Sbjct: 162 VTGHNADDMAETVLMNLLRGDTARLDRCTELV-TGSDDSPVKRSKPLKYAYEKEIVLYAH 220 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R +++++ Sbjct: 221 YKKLDYFSTECTYSPEAFRGTARTLIKNLE 250 >gi|255720959|ref|XP_002545414.1| VEG136 protein [Candida tropicalis MYA-3404] gi|240135903|gb|EER35456.1| VEG136 protein [Candida tropicalis MYA-3404] Length = 384 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 14/210 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L YP + + SGG DS L L ++ ++R ++ +S+D + D + V Sbjct: 64 KLFYPGEKVAIGASGGKDSTVLASILKTL-NERYNYGLELVLLSIDEGIVGYRDDSLATV 122 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLI 122 + + +VS+K+ + A R + A+ + + Sbjct: 123 KRNQKQYEMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHV 182 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV M R + + + T + S+PF +++I + Sbjct: 183 VTGHNADDVAETVLMNILRGDVARLENSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAH 241 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++ ++ Sbjct: 242 YKKLDYFSTECTYAPEAFRGTARELLKGLE 271 >gi|76803288|ref|YP_331383.1| hypothetical protein NP5322A [Natronomonas pharaonis DSM 2160] gi|76559153|emb|CAI50752.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160] Length = 325 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 24/221 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P L+ +SGG DS+ L L + +++ A+++ + + ++ + Sbjct: 53 PQTWLIGLSGGKDSVVLTHILDETFAA--DPRVELVALTIHEGIEGYRDASLEACRELTT 110 Query: 79 RLRIAHSVVSWKNSKP------------QTGLMAAAREARYALISEHAKTINATLIMTAH 126 L I H+VV++ + A R +S +A A ++T H Sbjct: 111 DLDIEHAVVNYADEYGVEMDNVAEDDPLGMAPCAYCGVFRRDALSAYADEYGADKLLTGH 170 Query: 127 TFDDQLETVYMRSQRDY----AEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 DD+ +T M A+ G + D + ++ R P +++ + Sbjct: 171 NLDDEAQTAMMNLLSGDIKQVAKHFDASLGSFEDRAVDGDPFVPRAKPLRDIPEKEVALY 230 Query: 181 LLQRNIS--WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + + E P + + R ++ + +++ + Sbjct: 231 AHLKELPSHMAECPH-ASEAY-RGEIQDHLHELEDEHPGTR 269 >gi|225026806|ref|ZP_03715998.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353] gi|224955813|gb|EEG37022.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353] Length = 390 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 25/222 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DSM + + F + + +D + + + +L+ Sbjct: 153 IAVCISGGKDSMLMAKLFQELKLHNKFP-FEVKFVVMDPGYSPENRKVIE---ENARKLK 208 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + R + AK + I H +DD +ET+ M Sbjct: 209 IPIHIFESDIFESVYHIEKSPCYLCARMRRGYLYNFAKELGCNKIALGHHYDDVIETILM 268 Query: 138 RSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS-- 193 G + M + + + RP R +DI+++ ++ + + Sbjct: 269 GML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLIREDDIKAWRDYNDLRFIQCACKF 323 Query: 194 --------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 N +++ +RV +++ + +I Y++ F+ + Sbjct: 324 TDTCTTCNNEENQSKRVEIKQLIAEIKKKNPYVEAHIFKSVE 365 >gi|224542853|ref|ZP_03683392.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM 15897] gi|224524228|gb|EEF93333.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM 15897] Length = 289 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 23/199 (11%) Query: 2 FLSPIESVRFFVR-----SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 F P+ R F++ L+ P I V +SGG DSM L L + F Sbjct: 25 FRKPL--WRRFIKGIQDYELIEPGDKIAVCISGGKDSMLLAKLLQELQRHGKF-HFDLEF 81 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111 I +D + + + + +L I + R + Sbjct: 82 ICMDPGYNPANR---KLIEENAEKLGIPIQFYESDIFNVVHGIEKNPCYLCARMRRGFLY 138 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPF 169 A+ + I H + D +ET+ M G + M + + + RP Sbjct: 139 NRAQELGCNKIALGHHYSDVIETILMGMM-----YGAQIQTMMPKLHSKNFKGMELIRPM 193 Query: 170 LRCRREDIRSFLLQRNISW 188 EDI ++ + N+ + Sbjct: 194 YLIHEEDIIAWAEKFNLKF 212 >gi|154346638|ref|XP_001569256.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134066598|emb|CAM44396.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 322 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 I+S R FV P + VA SGG DS L+ L ++ +G I +SVD Sbjct: 42 DTIQSERLFV-----PGDV-VACGASGGKDSTVLIHLLDTLNKQHRYG-IHIELVSVDEG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S++N R + Sbjct: 95 IVGYRDDSLETVKRNSACYGLPLHILSYRNIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169 + A + A I T H DD ET+ M R A + LS + + +P Sbjct: 155 EKGAALVKADKIATGHNADDMAETILMNVLRADAPR---LSRCTSAVAAGEGILPRVKPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + + + + R R ++D++ Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGAARTLMKDLE 254 >gi|150398931|ref|YP_001322698.1| PP-loop domain-containing protein [Methanococcus vannielii SB] gi|150011634|gb|ABR54086.1| PP-loop domain protein [Methanococcus vannielii SB] Length = 323 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 41/260 (15%) Query: 2 FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 F E + FV + ++V +SGG DS+ LL L + ++ AI+V Sbjct: 55 FEEISERMGRFVSKNNIISPKDKVVVGLSGGKDSLALLHLL---EPYKRKYGVEIHAITV 111 Query: 59 DH---CLRE--TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-------------GLMA 100 D +R V+ +S C L I H ++ + + + Sbjct: 112 DLNIDGIRPWNETNKNVKMISKTCENLNIPHKIIPYDENVVEMSKILSKNSKGIDYSPCF 171 Query: 101 AAREARYALISEHAKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 + +R +++ +AK I HT +D +T+ + K + D Sbjct: 172 SCSISRRHILTNYAKETFNCENVKIALGHTLEDNSDTIIANILKGNIIKALEPIKNFDET 231 Query: 158 LYD--------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRR 206 D N + RP L E I+ L + NI + +D + + RV +R+ Sbjct: 232 KIDFDGLKVSLKNCCMIRPLLNISEEKIKKALNECNIEYYKDK--DECPYSRVNGDGIRK 289 Query: 207 FVRDIDLHALYLKMKKFQDL 226 L L + +++ Sbjct: 290 K-SHEVLKNLEKDVPNIREM 308 >gi|167837110|ref|ZP_02463993.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis MSMB43] Length = 122 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++++ + +L A I +A SGG DS LL + R G + A+ V H L Sbjct: 14 LDAIGVALSTLPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 68 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN 118 A + + ++ L + G+ A+AREARY + Sbjct: 69 ADAWLAHCAETAEALGVRFDAARVDVPCASGQGVEASAREARYRALETMCARHG 122 >gi|257466209|ref|ZP_05630520.1| PP-loop domain protein [Fusobacterium gonidiaformans ATCC 25563] gi|315917367|ref|ZP_07913607.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691242|gb|EFS28077.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 248 Score = 99 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SPI + I V +SGG DS+ L AL + + I + Sbjct: 21 SPIGRAMHKYHMIEEGDKIAVGISGGKDSLTTLNALIRIQKIAQVS-FEIIPIHIH---- 75 Query: 64 ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115 + + + C +L + V + + P R ++ + Sbjct: 76 PNTDKASYQKMKEYCEKLGLELVVETTNLEEILFNEENPMKNPCFLCGRIRRGILYRMLQ 135 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD +ET M +G + + + RP + Sbjct: 136 ERKINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLR 227 +I ++ + + + +D +E R++++ + ++ ++ F + Sbjct: 192 NIIRYVNRLELPV----TKSDCPYEVSEQSRRLKMKNLIHEMTKDNPNVRSTIFSSIE 245 >gi|254583133|ref|XP_002499298.1| ZYRO0E08558p [Zygosaccharomyces rouxii] gi|238942872|emb|CAR31043.1| ZYRO0E08558p [Zygosaccharomyces rouxii] Length = 370 Score = 99 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 17/209 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L +L+DR I+ +S+D + D + V Sbjct: 65 RGEKVAIGASGGKDSTVLAYVLK-LLNDRYDYGIELVLLSIDEGIVGYRDDSLATVKRNQ 123 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126 + + ++S++ T A R + + + + ++T H Sbjct: 124 VQYGLPLEIISYRELYDWTMDEIVACAGVRSSCTYCGVFRRQALDRGSSKLGISHVVTGH 183 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + L I I R PF +++I + + Sbjct: 184 NADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYK 240 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDL 213 + + + R R ++++++ Sbjct: 241 KLDYFSTECSYAPEAFRGTARELMKNLEM 269 >gi|47205345|emb|CAF93474.1| unnamed protein product [Tetraodon nigroviridis] Length = 320 Score = 99 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 12/202 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L + +L++R + +SVD + D + V + Sbjct: 53 VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A + I T H DD Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + + + D + +P ++I + + + + Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTASEGDGVVPRCKPLKYAYEKEIVLYAYFKKLDYFS 231 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 232 TECIYSPNAYRGYARTFLKDLE 253 >gi|148234178|ref|NP_001090363.1| cytoplasmic tRNA 2-thiolation protein 1 [Xenopus laevis] gi|123913902|sp|Q05AW7|CTU1_XENLA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|116063404|gb|AAI23241.1| MGC154488 protein [Xenopus laevis] Length = 341 Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 15/210 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L +P + + SGG DS L + VL++R + +SVD + D ++ V Sbjct: 45 KLFHPGEKVGIGASGGKDSTVLAHVMK-VLNERYAYGLDLILLSVDEGISGYRDDSLQTV 103 Query: 74 SDVCSRLRIAHSVVSW--------KNSKPQTGL---MAAAREARYALISEHAKTINATLI 122 + + +VS+ Q GL R + A + I Sbjct: 104 KRNQQQYELPLKIVSYLELYGWTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGINKI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD ETV M R + T + + +P ++I + Sbjct: 164 CTGHNADDIAETVLMNFLRGDIARLR--RCTAITTGSEGAIPRCKPLKYTYEKEIVLYAY 221 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 222 FKKLDYFSTECIYSPNAYRGHARVFLKDLE 251 >gi|254173021|ref|ZP_04879695.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] gi|214033177|gb|EEB74005.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] Length = 306 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 17/184 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +LV VSGG DS L + + ++ + E ++ Y Sbjct: 44 KMLKPDERVLVVVSGGKDSAVTAYILKKL-------GYNIECLHINLGIGEYSEKSESYA 96 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124 C L + +V K + R RY + ++ A + T Sbjct: 97 KKQCEALGVPLHIVRVKELLGKGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 155 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD+ ++ + + + + +P ++ ++ L Sbjct: 156 GHNLDDEASFIFSNMMHWNTQYLAKQGPVTPSQFNGKLVKKVKPLYEVTEREVVAYALAN 215 Query: 185 NISW 188 I + Sbjct: 216 GIDY 219 >gi|320580621|gb|EFW94843.1| ATPase, putative [Pichia angusta DL-1] Length = 363 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 17/195 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE + F + + SGG DS L L ++ ++R + +S+D + Sbjct: 45 IEKEKLF----YPGEKVAIGASGGKDSTVLASILKTL-NERYNYGVHLVLLSIDEGIVGY 99 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHA 114 D + V + + +VS+K+ R + A Sbjct: 100 RDDSLATVKRNQQQYEMPLEIVSYKDLYNWTMDEIVSCSGVKSSCTYCGVLRRQALDRGA 159 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + ++T H DD ETV M R + + + T + S+PF C + Sbjct: 160 MKLGINHVVTGHNADDMAETVLMNLLRGDTARLESSTNIT-TKSTGSPIKRSKPFKYCYQ 218 Query: 175 EDIRSFLLQRNISWC 189 ++I + + + + Sbjct: 219 KEIVLYAHYKKLDYF 233 >gi|224083793|ref|XP_002307125.1| predicted protein [Populus trichocarpa] gi|222856574|gb|EEE94121.1| predicted protein [Populus trichocarpa] Length = 354 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 16/211 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P I + SGG DS L L + + R + +SVD + D + V Sbjct: 53 QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 111 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS+K+ R + A + + Sbjct: 112 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKL 171 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI-RSFL 181 +T H DD ETV + R + T D + +PF ++I ++ Sbjct: 172 VTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFKYTYEKEIMLTYA 229 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 230 YFKRLDYFSTECIYSPNAYRGFAREFIKDLE 260 >gi|294673442|ref|YP_003574058.1| PP-loop family protein [Prevotella ruminicola 23] gi|294471700|gb|ADE81089.1| PP-loop family protein [Prevotella ruminicola 23] Length = 259 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 31/187 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73 ILV +SGG DS+ LL L S + A+ V + + + Y+ Sbjct: 34 DDRILVGLSGGKDSLLLLEMLAK-RSRIQHPRFTVEALHVRMANIHY------ETDTSYL 86 Query: 74 SDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREA------------RYALISEHAKTIN 118 C L + V++ ++ + AAR R + A+ + Sbjct: 87 QQFCDNLGVKLHVLTTSFEVDATADSEPTDAARRRKQKTPCFLCSWNRRKQMFNLAQELG 146 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I H DD L T M +G + + + L I RP +DI+ Sbjct: 147 CNKIALGHHQDDLLHTALMNLT----FQGRFDTMPALLRMRKMPLAIIRPLCMIEEKDIK 202 Query: 179 SFLLQRN 185 + + Sbjct: 203 QYAELQG 209 >gi|218134226|ref|ZP_03463030.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC 43243] gi|217991601|gb|EEC57607.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC 43243] Length = 376 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 25/226 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V +SGG DSM + + F + I +D + + D Sbjct: 135 KGDRIAVCISGGKDSMLMAKLFQELKIHNKFP-FEVKFIVMDPGYSPENRKVIE---DNA 190 Query: 78 SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I ++ + R + +AK + I H +DD +E Sbjct: 191 RNLNIPITIFESDIFESVYHIEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIE 250 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 T+ M G + M + + + RP R +DI+++ N+ + + Sbjct: 251 TILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNNLHFIQC 305 Query: 192 PS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 N ++R +RV V+ +R + +++ F+ + Sbjct: 306 ACKFTDTCTTCNNNENRSKRVEVKELIRSLKEVNPFVEGNIFKSVE 351 >gi|160887327|ref|ZP_02068330.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483] gi|156107738|gb|EDO09483.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483] Length = 248 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 IL+ +SGG DS+ L+ L + + A+ V + + + E Y+ Sbjct: 31 GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 C + + + R + AK I H DD L Sbjct: 86 HCETYGVLFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET+ M +G + ++ ++ I RP D+ R+ Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194 >gi|332703805|ref|ZP_08423893.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332553954|gb|EGJ50998.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 249 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 19/217 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L A I VAVSGG DS ++ L + I+ ++ D +V Sbjct: 26 QMLSPGARIGVAVSGGVDSFVMIQTLL-IRKSIVPFPIELMVFHINPGF-----DSTNHV 79 Query: 74 --SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +D C +A ++ + R + E + N T + Sbjct: 80 PVADWCQDNGLAAHFEVTNFGPRAFSEENREKSACFFCSMHRRRRLFELCRNYNVTHLAL 139 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 HT DD + T +M + G+ + L + RP L ++ IR Sbjct: 140 GHTKDDLVTTFFMNMMQGGKVDGL----HSRDEYFGGELMLIRPMLLIEKDMIRRAAKAW 195 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 + +P + R ++ ++ ++ H+ +K Sbjct: 196 RLPIVTNPCPASENSRRSQIGGWLSELWSHSPEIKRN 232 >gi|313227291|emb|CBY22437.1| unnamed protein product [Oikopleura dioica] Length = 388 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 17/217 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + I + F R + + SGG DS L+ + +L++R +K +S+D + Sbjct: 39 NTITKYKLFKR----GQKVAIGASGGKDSAVLMQVMK-ILNERYDYGLKLCLLSIDEGIS 93 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112 + V + + ++S+K+ + R + Sbjct: 94 GYRDHSLEEVKFHSNNYGLELKILSYKDLYNWSMDEIVSVAGRKSNCTFCGVFRRQALDR 153 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + ++ T H DD ETV M R + + + T + +P Sbjct: 154 GAWQLGVDIVATGHNGDDVAETVLMNMLRGDVGRLSRCTAIT-TADDPSGIPRVKPLKYQ 212 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 +I + + + R ++R ++R Sbjct: 213 YEAEIVKYARHSKVRYFSTECTYAPGAHRGQIREYLR 249 >gi|118378423|ref|XP_001022387.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89304154|gb|EAS02142.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 320 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 15/209 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V SGG DS L+ ++ + +G ++ +S+D + D + V D Sbjct: 49 RGERIAVGASGGKDSTVLIHVMNHLNKKYDYG-LELILLSIDEGITGYRDDSLETVKDNQ 107 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++S+K+ R + A+ +N I+T H Sbjct: 108 VTYGLQLKILSYKDLYGWTMDEIVKQIGLNNNCTFCGVFRRQALDRGAQLLNCDKILTGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD ET+ M R + + ++ D + D ++ +PF ++I + Sbjct: 168 NADDIAETILMNIARGDFFRLGRCVQITTGGDGVDDDDHIPRLKPFKYTYEKEIVLYAYH 227 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R VR ++DI+ Sbjct: 228 KKLVYFSTECIYSPNAYRGHVRELIKDIE 256 >gi|170106385|ref|XP_001884404.1| predicted protein [Laccaria bicolor S238N-H82] gi|226711425|sp|B0DK66|CTU1_LACBS RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|164640750|gb|EDR05014.1| predicted protein [Laccaria bicolor S238N-H82] Length = 354 Score = 99.6 bits (247), Expect = 9e-19, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 19/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L + +L++R ++ +S+D + D + V Sbjct: 46 NLFKPGDRVAIGASGGKDSTVLAYVMK-MLNERYQYGLELFLLSIDEGITGYRDDSLETV 104 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+ + R + A +N I Sbjct: 105 KRNQQQYDMPLKILSYDELYGWTMDAIVSQVGRKNNCTFCGVFRRQALDRGAAMLNVDHI 164 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + G C +I I R PF ++I + Sbjct: 165 VTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTQGEDTIRRSKPFKYAYEKEIVMY 220 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 221 AYFKKLDYFSTECIYSPDAYRGHARVFLKDLE 252 >gi|328869324|gb|EGG17702.1| ATP-binding domain-containing protein 3 [Dictyostelium fasciculatum] Length = 396 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 19/269 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + + SGG DS L + ++ + R + +S+D + D + V Sbjct: 75 FQRGDRVAIGASGGKDSTVLAEIMTTL-NKRHDYGLDLFLLSIDEGITGYRDDSLETVKR 133 Query: 76 VCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 + +I ++S+K R + A + A I+T Sbjct: 134 NQQQYQIPLKILSYKELYNWTMDEIVAEIGLKNNCTFCGVFRRQALDRGAVLLGANKIVT 193 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ETV M R + + + L S+PF +++I + + Sbjct: 194 GHNADDIAETVLMNLLRGDIPRLQ--RCINIVTGSEGALPRSKPFKYTYQKEIVMYAYFK 251 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLT 243 + + R R F++D++ + + Q + + M + + Sbjct: 252 KLDYFTTECIYAPNAYRGHARDFLKDLEAVRPSIIIDIIQSAENFHFRDEIKMPVQRNCN 311 Query: 244 VHM---RSIIAISQDIL-NIDSTLLFYLL 268 + + I ++ D L N++S Y L Sbjct: 312 LCGYICSNEICMACDFLKNLNSGKAKYAL 340 >gi|325096389|gb|EGC49699.1| VEG136 protein [Ajellomyces capsulatus H88] Length = 420 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 50 QGERVAIGASGGKDSTVLASVLKTL-NERHGYGLELMLLSIDEGIKGYRDDSLETVKRNA 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +V G R + A + ++T H Sbjct: 109 MQYCMPLEIVGYGELYGWTMDQVVAEIGTKGNCTYCGVFRRQALDRGAAKLGIGHVVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ET+ M R + + S T ++ S+P ++I + + + Sbjct: 169 NADDVAETIVMNLLRGDLPR-LARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYKKL 227 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++D++ Sbjct: 228 CYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|225557681|gb|EEH05967.1| VEG136 protein [Ajellomyces capsulatus G186AR] Length = 420 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 13/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++ ++R ++ +S+D ++ D + V Sbjct: 50 QGERVAIGASGGKDSTVLASVLKTL-NERHGYGLELMLLSIDEGIKGYRDDSLETVKRNA 108 Query: 78 SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + +V G R + A + ++T H Sbjct: 109 MQYCMPLEIVGYGELYGWTMDQVVAEIGTKGNCTYCGVFRRQALDRGAAKLGIGHVVTGH 168 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ET+ M R + + S T ++ S+P ++I + + + Sbjct: 169 NADDVAETIVMNLLRGDLPR-LARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYKKL 227 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R ++D++ Sbjct: 228 CYFSTECIYSPEAFRGSARTLIKDLE 253 >gi|268610221|ref|ZP_06143948.1| hypothetical protein RflaF_12069 [Ruminococcus flavefaciens FD-1] Length = 278 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 16/192 (8%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E+++ + + I V +SGG DSM L+ +L I +D Sbjct: 18 KLHEAIKEY-ELIQNGDKICVCISGGKDSM-LMAKCLQMLEKHGTYSFTCKFIVMD---P 72 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 +++ + + +L I V S + K + R + + A+ + Sbjct: 73 GYSEENLIKIKQNAEKLGIPMEVYSTRIFESTEKAEKNPCFLCARLRRGWLYKKAQELGC 132 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDI 177 I H FDD +ET+ M G + M + + + + RP R DI Sbjct: 133 NKIALGHHFDDVIETILMGML-----YGSQVQTMMPKLHSENYEGVHLIRPLYLVRESDI 187 Query: 178 RSFLLQRNISWC 189 ++ + + + Sbjct: 188 INWASENGLEFI 199 >gi|242280055|ref|YP_002992184.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638] gi|242122949|gb|ACS80645.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638] Length = 249 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 26/237 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M + E V+ I +AVSGG DS L+ + + I+ + V+ Sbjct: 20 MLMQKTEMVKD-------GDRIGIAVSGGVDSFVLIRTML-IRQAIIPFNIELMVLHVNP 71 Query: 61 CLRETAKDEVRY--VSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALIS 111 + + +SD C IA + G R + Sbjct: 72 GFIPDS-----HYPLSDWCRENGIASHIELTDYGPRAHGPENKKKSACFYCSRLRRKRLF 126 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 E N T + HT DD + T +M ++ +G+ + + L + RP L Sbjct: 127 ELCDQYNLTHLALGHTADDLVTTFHMNMLQNGRVQGLS----ANESFFKGKLQVIRPTLM 182 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 ++ I++ Q + + ++D +R + ++ D + F LR Sbjct: 183 LEKKYIKAAARQWELPIWSNKCPSNDNTKRSEINNWLEDEWRKMPGSRNNTFNALRR 239 >gi|240104187|ref|YP_002960496.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3] gi|239911741|gb|ACS34632.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3] Length = 304 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 17/184 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +LV VSGG DS L + + ++ + E ++ Y Sbjct: 42 KMLKPDEKVLVVVSGGKDSAVTAYILKKL-------GYNIECLHINLGIGEYSEKSEEYA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124 C L + +V K + R RY + ++ A + T Sbjct: 95 KKQCEALEVPLHIVRVKELFGKGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 153 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD+ ++ + + + +P ++ ++ L Sbjct: 154 GHNLDDEASFIFSNMMHWNTQYLAKQGPVTPAQFNGKLVKKVKPLYEVTEREVVAYALAN 213 Query: 185 NISW 188 I + Sbjct: 214 GIEY 217 >gi|168186046|ref|ZP_02620681.1| ExsB family protein [Clostridium botulinum C str. Eklund] gi|169296023|gb|EDS78156.1| ExsB family protein [Clostridium botulinum C str. Eklund] Length = 245 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 29/221 (13%) Query: 10 RFFVRSLV----------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 R F+R L + V +SGG DS+ LL AL ++ S + I++D Sbjct: 10 RQFLRYLRKSIGEYDMISPGDKVAVGLSGGKDSIFLLFALK-LIQLTSVKNFQLVGINID 68 Query: 60 HCLRETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALIS 111 E+ + + C+ I V + + + + R + Sbjct: 69 LGF------ELNISPLIEFCNNNNIPIIVEKTNIANVVFKDRKEKKPCSLCSKLRKGALI 122 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 ++ N I H DD +ET++M + + G + D N+ I RP + Sbjct: 123 RVSRANNINKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNIH---FDDKNISIIRPLIY 178 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 R + I + + + D + R ++ + ++ Sbjct: 179 LREDLIEKLTKKYELPVIKSTCPMDKKTTREDMKNLLTSLE 219 >gi|302521005|ref|ZP_07273347.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78] gi|302429900|gb|EFL01716.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78] Length = 207 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 13/210 (6%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A I+ HT DDQ ETV + R + LSGM + + RPFLR R+ Sbjct: 1 GAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTA 56 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R + +++ +DP NTD + R R+R +L + + +++ A Sbjct: 57 RKACMVQSLPVWDDPHNTDPAYTRSRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADA 116 Query: 238 IPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMER 289 + + TV + + + + +LR + GG + ++R Sbjct: 117 LDAWAARAAGTVRDEHGALDCAGLYALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDR 176 Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319 ++ + G+R G+V R L I Sbjct: 177 LITAWR-GQRALNLPGKVEARRLGGRLVIR 205 >gi|78224527|ref|YP_386274.1| C32 tRNA thiolase [Geobacter metallireducens GS-15] gi|123570780|sp|Q39QC5|TTCA_GEOMG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|78195782|gb|ABB33549.1| PP-loop protein [Geobacter metallireducens GS-15] Length = 264 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75 I VAVSGG DS LL L L R+ K A ++D R + ++ + Sbjct: 36 GDRIAVAVSGGKDSYTLLHIL-EALRRRAPVKYDLVAFTIDSGYPGFR--SDVIAAHLKE 92 Query: 76 VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + H + + +P + + + ++ A+ + H DD + Sbjct: 93 HGFSHHVEATTHYDIIKEKRRPGSSYCSICARLKRGVLYTLAQQHGCNKLALGHHLDDFV 152 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 ET+ + G + + + + RP + +I F + Sbjct: 153 ETLLLNQF----FVGTLKAMAPRMLADNGATTVIRPLVYVEEREIIPFAREN 200 >gi|15217127|gb|AAK92521.1|AF401042_1 LaaH [Lactobacillus sakei] Length = 348 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 3/145 (2%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A ++TAH DDQLET+ M+ R M G+ + + + RP L Sbjct: 1 MTAEKADYLVTAHHGDDQLETLMMKFIRSGELHEM--RGIQSQRPFA-DGTLIRPLLPFA 57 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 ++D+R + L NI+ ED +N + R RVR + ++ ++ Sbjct: 58 KQDLRDYALANNITSFEDQTNYETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQLTAL 117 Query: 234 VAMLIPKYLTVHMRSIIAISQDILN 258 + T+ + ++ +++ Sbjct: 118 LGQQAQLATTLLPLLDLKVTDKVIS 142 >gi|261856657|ref|YP_003263940.1| PP-loop domain protein [Halothiobacillus neapolitanus c2] gi|261837126|gb|ACX96893.1| PP-loop domain protein [Halothiobacillus neapolitanus c2] Length = 280 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 21/187 (11%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEV 70 S++ P IL+ +SGG DS+ LL L V R+ + +AI+VD + Sbjct: 40 SMIRPGDRILIGLSGGKDSLSLLHCLRHVQR-RAPISFELAAITVDPLVGGF------DP 92 Query: 71 RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMT 124 + +L I + V A + L+ + A+ ++ Sbjct: 93 APLVPYLEKLGIPYFVEREDIVGLANTHMRGDSYCAFCARMKRGLLYKAARREGYNVLAL 152 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 DD E+ M + M + D ++ I RPF+R R + F Q Sbjct: 153 GQHLDDLAESFLMSAFHGGKLNTMKAHYLND----AGDVRIIRPFVRVRERMLADFATQN 208 Query: 185 NISWCED 191 + D Sbjct: 209 QLPVIRD 215 >gi|126644499|ref|XP_001388098.1| hypothetical protein [Cryptosporidium parvum Iowa II] gi|126117326|gb|EAZ51426.1| hypothetical protein cgd3_1020 [Cryptosporidium parvum Iowa II] Length = 1105 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 20/218 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++++ F + +LVAVSGG DS+ +L L + K + SA +VD +T+ Sbjct: 838 QAIKKF-DMIREGDKVLVAVSGGKDSLTMLHILLFLQRVAPV-KFEVSAATVD---PQTS 892 Query: 67 KDEVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTI 117 + + + L + + +S K + + A + L+ K Sbjct: 893 EMDASKLIPYMESLGVKYHFISYPIVDIAAKVKEKQKKISYCAFCSRMKRGLLYSCMKKN 952 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 ++ DD E+ + + + + + + N+ + RP + CR +D+ Sbjct: 953 GYNVLSLGQHVDDICESFLLSLMNNGKLN----TMKANYFVPEYNVRVVRPMIYCREKDL 1008 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 +F L+ + + N F + + RR ++ + Sbjct: 1009 ANFALKAQLPIITE--NCPACFSQPKERRHMKQLLSQE 1044 >gi|322421218|ref|YP_004200441.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M18] gi|320127605|gb|ADW15165.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M18] Length = 255 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 9/170 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77 I VAVSGG DS +L L +L R+ + + AI++D R D ++ + Sbjct: 29 GDRIAVAVSGGKDSYAMLHML-DILRRRAPVRYELVAINIDSGYRGYRADIIEEHLKEHG 87 Query: 78 SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + H + + +P + + + + A+ + + H DD +ET Sbjct: 88 FAYHMEKTEHYDIISEKRRPNSSYCSICARLKRGTLYTLAQQMGCNKLALGHHMDDFIET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 + + + K M S + D + + RP + ++I F Sbjct: 148 LLLNQFFVGSLKAMAPSMLADNGV----TTVIRPLVYVPEKEIIPFSRNN 193 >gi|255635229|gb|ACU17969.1| unknown [Glycine max] Length = 353 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 15/210 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L + ++G + +SVD + D + V Sbjct: 55 QLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYG-LHLFLLSVDEGITGYRDDSLETV 113 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + VVS+K+ R + A + + Sbjct: 114 HRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKV 173 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +T H DD ETV + R + T D + +PF ++I + Sbjct: 174 VTGHNADDIAETVLLNLLRVDVARLS--RCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 231 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R F++D++ Sbjct: 232 FKKLDYFSTECIYSPNAYRGFAREFIKDLE 261 >gi|256810699|ref|YP_003128068.1| PP-loop domain protein [Methanocaldococcus fervens AG86] gi|256793899|gb|ACV24568.1| PP-loop domain protein [Methanocaldococcus fervens AG86] Length = 303 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 27/223 (12%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSDVC 77 I + +SGG DS+ + L + + + VD + RE AK Y+ D C Sbjct: 47 KIGIGISGGKDSLAMAYILKKLFNH--IPNAELICFFVDEGIEGFREKAK---EYIKDFC 101 Query: 78 SRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATL 121 + V+ +++ T + R L++++A Sbjct: 102 KEQGLELKVIKFRDEIGHTLDEIVKNNYLTKLNIGKPCSFCGVVRRYLLNKYALKEGCDY 161 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + H DD +T+ M + + + + +P +++R + Sbjct: 162 LAIGHNLDDFCQTILMNYVEGNIKN---IIQFGKEFEGEGFVKRIKPLKLIPEDEVRLYA 218 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 NI + ++P R R+++ + ++ +K + Sbjct: 219 DIVNIKYQKEPCPYSSLSYRHRMKKVIEVLEEDKPGVKFSILR 261 >gi|302511069|ref|XP_003017486.1| PP-loop family protein [Arthroderma benhamiae CBS 112371] gi|291181057|gb|EFE36841.1| PP-loop family protein [Arthroderma benhamiae CBS 112371] Length = 680 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 59/263 (22%) Query: 80 LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + V++ + + + G AR RY ++ + + ++ H DD +ET Sbjct: 6 LGVQSKVLTLQWPEGGLLTKKGFETQARMLRYQILGKACVKDDIRALLLGHHQDDNVETA 65 Query: 136 YMRSQRDYAEKGM-------------GLSG------------------MCDTILYD---- 160 MR + + + G+ GL G M TI + Sbjct: 66 LMRISKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQGILKSTNMDGTISHPSSEI 125 Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203 +++ RPF + + + + I++ D +N D F R Sbjct: 126 PSRSMNFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQENKIAFVSDSTNEDRTFTIRNT 185 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNID 260 VR+ + +L L+ L K ++ + + + + Sbjct: 186 VRQLLNSENLLPRALQRPSILSLVDKSREQTEKFRELCESILKKVEVLSLDTRFGTMVVK 245 Query: 261 STLLFYLLRVSAAICGGQISLPG 283 ++ L + + LP Sbjct: 246 MPMMSELPKHQINAVQARTPLPD 268 >gi|91093715|ref|XP_967465.1| PREDICTED: similar to CG8078 CG8078-PA [Tribolium castaneum] gi|270012990|gb|EFA09438.1| hypothetical protein TcasGA2_TC010650 [Tribolium castaneum] Length = 338 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + + +A SGG DS L + +L+++ K+ +S+D + D + Sbjct: 43 AKLFKPGSKVAIAASGGKDSTVLAYVMK-LLNEKYDYKLDLVLLSIDEGITGYRDDSLDT 101 Query: 73 VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121 V + ++S+K+ + R + A +N Sbjct: 102 VKQNRDDYGMPLKIMSYKDLYGWTMDEIVAEIGRKNNCTFCGVFRRQALDRGAALLNVDY 161 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRS 179 + T H DD ETV M R + C +I+ D I +P ++I Sbjct: 162 LATGHNADDIAETVLMNILRGDLARLS----RCTSIITDSGDGIPRVKPLKYTYEKEIVM 217 Query: 180 FLLQRNISWC 189 + R + + Sbjct: 218 YAYFRKLVYF 227 >gi|302662076|ref|XP_003022697.1| PP-loop family protein [Trichophyton verrucosum HKI 0517] gi|291186657|gb|EFE42079.1| PP-loop family protein [Trichophyton verrucosum HKI 0517] Length = 680 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 82/263 (31%), Gaps = 59/263 (22%) Query: 80 LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L + V++ + + + G AR RY ++ + + ++ H DD +ET Sbjct: 6 LGVQSKVLTLQWPEGGLLTKKGFETQARMLRYQILGKACVKDDIRALLLGHHQDDNVETA 65 Query: 136 YMRSQRDYAEKGM-------------GLSG------------------MCDTILYD---- 160 MR + + + G+ GL G M +TI + Sbjct: 66 LMRISKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQGILKSTNMDETISHPSSEI 125 Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203 +++ RPF + + + + I++ D +N D F R Sbjct: 126 PSRSMNFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQENKIAFVSDSTNEDRTFTIRNT 185 Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNID 260 VR+ + +L L+ L K ++ + + + + Sbjct: 186 VRQLLNSENLLPRALQRPSILSLVDKSREQTEKFRELCESILKKVEVLSLDTRFGTMVVK 245 Query: 261 STLLFYLLRVSAAICGGQISLPG 283 ++ L + + LP Sbjct: 246 MPMMSELPKHQINAVQARTPLPD 268 >gi|262383605|ref|ZP_06076741.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294503|gb|EEY82435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 248 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%) Query: 1 MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V+ F L+ ILV +SGG DS+ L+ L S + + Sbjct: 10 LFRKIEDKVKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68 Query: 58 V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109 + + +C + E Y+ + V ++ + R Sbjct: 69 IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E AK I H DD LET+ M +G + + ++ I RP Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLKMDKFDMEIIRPM 178 Query: 170 LRCRREDIRSFLLQRN 185 ++ + Sbjct: 179 CLVEERELIQVAAWKG 194 >gi|20806605|ref|NP_621776.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|20515049|gb|AAM23380.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 301 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 30/217 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + + L ++VA+SGG DS+ L + + VD Sbjct: 30 FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKRL-------GYEVLGFFVDLG 82 Query: 62 L-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------Y 107 + +++ V + C I +V K + A R+ R Sbjct: 83 ITQNDFSPRSREV---VENFCKEHDIPLEIVDLKERYGKDIPEVAKRQDRICAICGVTKR 139 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWIS 166 L++E+A ++NA + T HT DD + + R D G+ + + Sbjct: 140 HLMNEYALSVNADALATGHTLDDMAKLLLANLMRWDLHHLAKGVPTLPAEPGFAKK---I 196 Query: 167 RPFLRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 +P ++I +F NI E P + ++ R Sbjct: 197 KPLAFQSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233 >gi|256078261|ref|XP_002575415.1| cancer-associatedprotein protein [Schistosoma mansoni] gi|238660653|emb|CAZ31648.1| cancer-associatedprotein protein, putative [Schistosoma mansoni] Length = 315 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I + SGG DS L L ++L+ R + +S+D + D + V Sbjct: 48 RGDKIAIGASGGKDSTVLAYIL-NLLNKRYDYGAELLLLSIDEGISGYRDDSLMTVQRNQ 106 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + ++S+++ R + + A + A I T H Sbjct: 107 IQYSLPLKILSYQDLYGWSMDDIVKHIGNKRNCTYCGIFRRQALDKGALLLGANKICTGH 166 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + M D L +PF ++I + + Sbjct: 167 NADDIAETVLMNILRGDIGRLKRCTAM--MTGTDDILPRFKPFKYAYEKEIVMYAHMHKL 224 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + + R VR F++D++ Sbjct: 225 DYFSTECKYAPQAYRGHVRAFIKDLE 250 >gi|253579524|ref|ZP_04856793.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849025|gb|EES76986.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 394 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 37/211 (17%) Query: 10 RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHC 61 R F ++L I V +SGG DSM + L + + GKI F + ++ Sbjct: 129 RPFTKALNEYQLIQEGDKIAVCISGGKDSMLMAKLLQEL---KRHGKIHFELVFLVMNPG 185 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 A + + + D L I +V ++ + R + HAK + Sbjct: 186 Y--NADNW-KIIQDNAELLGIPLTVFESDIFDTVAEIENNPCYLCARMRRGYLYSHAKEL 242 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLR 171 I H FDD +ET+ M GM SG +T++ L + + RP Sbjct: 243 GCNKIALGHHFDDVIETILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPMYL 293 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + I+++ + + + RF Sbjct: 294 IKESAIKAWRDTNGLHFIQCAC----RFTEN 320 >gi|289580657|ref|YP_003479123.1| PP-loop domain protein [Natrialba magadii ATCC 43099] gi|289530210|gb|ADD04561.1| PP-loop domain protein [Natrialba magadii ATCC 43099] Length = 319 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 76/218 (34%), Gaps = 19/218 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L LH + +I+ +++ + + ++ Sbjct: 53 PQTWVIGLSGGKDSVVLTQILHETFAK--DPRIELVGLTIHEGIEGYRDKSLDACVELSD 110 Query: 79 RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L I H VVS ++ A R ++S +A + A L++T H Sbjct: 111 DLDIRHEVVSYEDEFGIQMDDVVEDDPENMAACAYCGVFRRDILSRYADDLGADLLLTGH 170 Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 DD+ +T M L + + + + ++P +++ + Sbjct: 171 NLDDEAQTALMNFLEGDVEQIAKHFDASLGPLSEREQQEEFVPRAKPLRDVPEKEVALYA 230 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++ R +++ + +++ + + Sbjct: 231 HLNDLPAHITECPHASEAYRGEIQQLLYELEENHPGTR 268 >gi|167519993|ref|XP_001744336.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777422|gb|EDQ91039.1| predicted protein [Monosiga brevicollis MX1] Length = 361 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 16/180 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L L ++ ++R ++ +SVD + D + V + Sbjct: 54 VAIGASGGKDSTVLAYVLKTL-NERHDYGLQLVLLSVDEGISGYRDDSLETVKRNQQQYA 112 Query: 82 IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + ++VS+K + + R + A + ++T H DD Sbjct: 113 LPLTIVSYKELYGWTMDEIVAAVGRKSNCTFCGVFRRQALDRGAHLLKVNKVVTGHNADD 172 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ETV M R + L + + D +L S+PF ++I + + + + Sbjct: 173 VAETVLMNILRGDIAR---LQRCTEIVTGDDGDLPRSKPFKYTYEKEIVMYAYFKKLDYF 229 >gi|301311530|ref|ZP_07217457.1| PP-loop family protein [Bacteroides sp. 20_3] gi|300830616|gb|EFK61259.1| PP-loop family protein [Bacteroides sp. 20_3] Length = 248 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 22/196 (11%) Query: 1 MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V+ F L+ ILV +SGG DS+ L+ L S + + Sbjct: 10 LFRKIEDKVKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68 Query: 58 V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109 + + +C + E Y+ + V ++ + R Sbjct: 69 IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E AK I H DD LET+ M +G + + ++ I RP Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLRMDKFDMEIIRPM 178 Query: 170 LRCRREDIRSFLLQRN 185 ++ + + Sbjct: 179 CLVEERELIQVAVWKG 194 >gi|156100899|ref|XP_001616143.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148805017|gb|EDL46416.1| hypothetical protein, conserved [Plasmodium vivax] Length = 443 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 12/140 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R I +AVSGG DS L L + ++ K +++D ++ D ++ V Sbjct: 51 RMFEEKDKICIAVSGGKDSSVLAHVLVQIRRKHNY-KWDLFLLAIDEGIKGYRDDSLKIV 109 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 + + + V+ +++ + R + A NAT + Sbjct: 110 FKLQEKYHLPLKVLKFEDIFTYTMDAVVSFIGKKNNCTVCGVFRRQAMERGALLFNATKL 169 Query: 123 MTAHTFDDQLETVYMRSQRD 142 +T H DD ET+ M R Sbjct: 170 VTGHNADDLAETILMNMCRG 189 >gi|331270378|ref|YP_004396870.1| PP-loop family protein [Clostridium botulinum BKT015925] gi|329126928|gb|AEB76873.1| PP-loop family protein [Clostridium botulinum BKT015925] Length = 233 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 22/217 (10%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P + V +SGG DS+ LL L ++ S + I++D E+ Sbjct: 12 NMIEPGDKVAVGLSGGKDSIFLLFGL-RLIQMTSIKNFELIGINIDLGF------EMNLA 64 Query: 74 --SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 D C + I + N + + + + R + AK N I Sbjct: 65 PLEDFCMKNNIPIIIEKTNISEVVFNDRKEKKPCSLCSKLRKGALIRVAKANNVNKIALG 124 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET++M + + G + D N+ I RP + + I+ + + Sbjct: 125 HNSDDVIETLFMNVLK-VGKLGTFHPNIS---FDDKNINIIRPLIYLKENLIQKLTTKYD 180 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 + + D + R +++ + I L LY ++ Sbjct: 181 LPVIKSSCPKDKKTTREDMKQLL--IKLENLYPDAQR 215 >gi|317486185|ref|ZP_07945023.1| PP-loop family protein [Bilophila wadsworthia 3_1_6] gi|316922562|gb|EFV43810.1| PP-loop family protein [Bilophila wadsworthia 3_1_6] Length = 250 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 15/191 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A + VAVSGG DS LL L F + AI ++ A++ V + Sbjct: 29 PGAKVGVAVSGGVDSWVLLEVLRRRQRIVPF-RFDIMAIHLNPGF--DAENHAPLV-EYL 84 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAHTFDD 130 ++ +A + + R + E + T + H DD Sbjct: 85 AKHGVAGHIEVTDHGPRGHSPENRRNSACFYCAMLRRTRLFEVCQRYGLTHLAFGHNADD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M ++ +GMG+ + L + RP L + DI + + Sbjct: 145 LVTTFFMNLVQNGRVEGMGMC----DDFFKGALKVIRPLLLVEKPDIIKAARRWELPVWS 200 Query: 191 DPSNTDDRFER 201 +P + + R Sbjct: 201 NPCPSAGKTNR 211 >gi|212224868|ref|YP_002308104.1| ATPase [Thermococcus onnurineus NA1] gi|212009825|gb|ACJ17207.1| ATPase [Thermococcus onnurineus NA1] Length = 305 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 33/214 (15%) Query: 1 MFLSPIESVRFFVRS----------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK 50 M+L P +F R L +LV VSGG DS L + Sbjct: 21 MYLCPEHFTEYFERKVKRTIERYKLLKPDERVLVVVSGGKDSAVTAYVLKKL-------G 73 Query: 51 IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------ 104 + ++ + E ++ Y C L + +V K R Sbjct: 74 YDIECLHINLGIGEYSEKSEEYAKRQCEALGVPLHIVRVKELLGHGIGEVRTRRPTCSYC 133 Query: 105 ---ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 RY + ++ A + T H DD+ ++ + Sbjct: 134 GLTKRY-IFNKFAYDNGFDAVATGHNLDDEASFIFSNLM----HWNTQYLAKQGPLTPGE 188 Query: 162 NLWI--SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ +P ++ ++ L I + + Sbjct: 189 GKFVKKIKPLYELTEREVVAYALANGIEYHIEEC 222 >gi|257463785|ref|ZP_05628173.1| PP-loop domain protein [Fusobacterium sp. D12] gi|317061330|ref|ZP_07925815.1| conserved hypothetical protein [Fusobacterium sp. D12] gi|313687006|gb|EFS23841.1| conserved hypothetical protein [Fusobacterium sp. D12] Length = 248 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 27/238 (11%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 SPI + I V +SGG DS+ L AL V + I + Sbjct: 21 SPIGRAMHKYNMIEEGDRIAVGISGGKDSLTTLNALIRVQKIARLS-FEILPIHIH---- 75 Query: 64 ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115 + + D C L + V + + P R ++ + Sbjct: 76 PNTDQSSYQKIKDYCEMLGLNLFVEHTNLEEILFHDENPVKNPCFLCGRIRRGILYRILQ 135 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + H DD +ET M +G + + + RP + Sbjct: 136 ERQINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLR 227 +I ++ + + + +D +E R++++ ++++ ++ F + Sbjct: 192 NIIRYVNRLALPV----TKSDCPYEVSEQSRRLKMKHLIQEMARDNPNVRSTVFSSIE 245 >gi|227498672|ref|ZP_03928816.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904128|gb|EEH90046.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 261 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 13/221 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVC 77 IL+ +SGG DSM L AL + S ++D A+D + + D C Sbjct: 28 GDKILIGLSGGKDSMFLTAALAEIQK-HSPRHFDLLCYTMDGMF---AEDFPKKELEDFC 83 Query: 78 SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + R A ++ A+ + + I AH DD +E Sbjct: 84 RTYGLTHYSEQVNVEALWGHRGNTPCFSCAYFRRAAMNRKARELGCSKIALAHHNDDAVE 143 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+ + + G + + T L + + RP L R +I + + + +P Sbjct: 144 TLMLNLF----QSGQNKTFLPVTHLSRSGMTVIRPLLFYREAEIIAIGKKIGLHPLANPC 199 Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 D + +R ++ R ++ + LR + Sbjct: 200 PYDGKTQRQDMKELARRLEKEIPHFYDHMASALRHSDKEEL 240 >gi|254167304|ref|ZP_04874156.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469] gi|197623567|gb|EDY36130.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469] Length = 288 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F IE V ++ I +A+SGG DSM LL ++R + + ++ Sbjct: 27 LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 76 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112 + E + + V + C + V + + + G+ R+ RY L+++ Sbjct: 77 GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIEGVRRKPCSVCGTVKRY-LMNK 134 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + A L+ T H DD L+ + + + + + + I RP Sbjct: 135 VPRENGAKLVATGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSTHPKMLPKI-RPLYLL 193 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++I + N+ + D Sbjct: 194 GDKEIEMYAKLNNVPYSSDKC 214 >gi|126464914|ref|YP_001040023.1| PP-loop domain-containing protein [Staphylothermus marinus F1] gi|126013737|gb|ABN69115.1| PP-loop domain protein [Staphylothermus marinus F1] Length = 330 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 115/295 (38%), Gaps = 39/295 (13%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 + VR +R HI+VAVSGG DS+ LL L+++ + K +A+ +D + Sbjct: 32 KKVRRTIRKYKMFSSREHIVVAVSGGKDSLSLLHYLYNL--SKRVPGWKITALLIDEGIG 89 Query: 64 ETAK----DEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE 104 D +R V + L + + + S+K + GL + Sbjct: 90 GYRDITKKDFLRVV----NELGVNYKIASFKEYLGYTLDEIVRIGREKGLPYLPCSYCGV 145 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R L+++ A+ + T++ TAH DD ++T M + +K + L+ + + + + Sbjct: 146 FRRYLLNKVARDLGGTVLATAHNLDDVIQTYVMNIINNSWDKILRLAPVTGPLDHPKFVR 205 Query: 165 ISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 ++PF ++ + + N+ + E P + R +R +R L+ L K Sbjct: 206 RAKPFYEILEKETTLYSILNNLYPKFVECP------YARFNIRWMIR-RQLNELEEKYPG 258 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAIC 275 + ++ + ++ K+ ++ I + L R I Sbjct: 259 TKYSLLRSLLRIISILSKHRDEIIQGEIKTCKVCGEPSAHEICRACLYRYELGIM 313 >gi|14590222|ref|NP_142287.1| hypothetical protein PH0300 [Pyrococcus horikoshii OT3] gi|3256690|dbj|BAA29373.1| 310aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 310 Score = 98.8 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 27/199 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILVAVSGG DS L + + ++ + ++ Y Sbjct: 42 KLLTKDERILVAVSGGKDSAVTAYVLKKL-------GYNIECLHINLGISGYSEKSEEYA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124 C + +V K R RY ++++ A I T Sbjct: 95 KKQCKLIGAPLHIVRIKEILGYGIGEVKTRRPPCSYCGLTKRY-IMNKFAYDNGFDAIAT 153 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLL 182 H DD+ + + + + + + G IL +I +P ++ ++ L Sbjct: 154 GHNLDDEA-SFLLNNILHWNTEYLAKGG---PILPQQGKFIKKVKPLYEVTEREVVAYAL 209 Query: 183 QRNISWCEDPSNTDDRFER 201 + + + + R Sbjct: 210 AVGLEYIVEECP----YAR 224 >gi|114678754|ref|XP_001174153.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pan troglodytes] Length = 348 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALATV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L R ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRQLQFASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAQFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256 >gi|312377717|gb|EFR24478.1| hypothetical protein AND_10897 [Anopheles darlingi] Length = 357 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 12/206 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A SGG DS L + VL++R + +S+D + D ++ V+ Sbjct: 35 AGEKVAIAASGGKDSTVLAHVMK-VLNERYNYGLNLVLLSIDEGITGYRDDSLKTVAQNR 93 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++S++ ++ R + A+ + + T H Sbjct: 94 DDYGMPLRILSYQELYGWTMDRIVAEIGRSNNCTFCGVFRRQALDRGARLMEVDCVATGH 153 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + + +P ++I + + + Sbjct: 154 NADDIAETVIMNILRGDTARLRRCCDIKTGSKANDTIPRVKPLKYSYEKEIVMYAHFKKL 213 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 214 VYFSTECVFAPNAYRGHARAFLKDLE 239 >gi|325968454|ref|YP_004244646.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28] gi|323707657|gb|ADY01144.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28] Length = 338 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 23/204 (11%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCL 62 + I+++R + R + I +A+SGG DS+ L+ L K ++ A S++ Sbjct: 37 TVIKTIRRY-RLINEGDKIGIAISGGKDSLTLMYLLGKFRKQGKLPKNVELMAFSINEG- 94 Query: 63 RETAK----DEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAR 103 + YV + I + V ++K + Sbjct: 95 HPYSCFYRMARSDYVQKLSEEYDIPYKVYTFKELFGVTATDVAHGLWSKGINVHMCTIDG 154 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R ++ + T I T H DD+ +TV + + ++ G I + + Sbjct: 155 VLRRRAMNIIGHKLGLTKIATGHNLDDEAQTVLLNVLSNDLDRFAWF-GPKPEIDREGFI 213 Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187 +P R E+I + I Sbjct: 214 PRIKPLRFVREEEIAIYAHYHGIP 237 >gi|156937500|ref|YP_001435296.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566484|gb|ABU81889.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I] Length = 383 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++ + P +L+ +SGG DS+ LL L V ++ A +VD + E Sbjct: 40 LKKVELPKRVLLGLSGGKDSVALLYLLKKVGTE-------VVAATVD-TVPNYTSLEAEL 91 Query: 73 VSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIM 123 V L + H V K K + + + R + A+ + I Sbjct: 92 AKRVAEELGVTHYTVYAKELYGFTALSYKKLRRAPCSICSKLRRHALELLARRLGIEYIA 151 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD R + + + +P ++I +FLL Sbjct: 152 TGHNMDDMASWALSYILRGDFQSLKKVRPVERPKGPARGR--VKPLFWIGEKEIMTFLLS 209 Query: 184 RNISW 188 + + W Sbjct: 210 KKLPW 214 >gi|262275723|ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] gi|262219531|gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP 101886] Length = 308 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 38 GDRIMVCLSGGKDSYTMLEILQSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 92 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K+ P+ + R ++ AK + AT I H DD Sbjct: 93 ESLGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + Sbjct: 153 MLETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIERYAEAAAFPII 207 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R ++ +RD D F+ ++ V + +A Sbjct: 208 --PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNVVPSHLADFELFDFKSIN 265 Query: 247 RSIIAISQDILNIDST 262 + I+ D Sbjct: 266 QGSGVINGGDTAFDRE 281 >gi|229585081|ref|YP_002843583.1| PP-loop domain protein [Sulfolobus islandicus M.16.27] gi|238619984|ref|YP_002914810.1| PP-loop domain protein [Sulfolobus islandicus M.16.4] gi|228020131|gb|ACP55538.1| PP-loop domain protein [Sulfolobus islandicus M.16.27] gi|238381054|gb|ACR42142.1| PP-loop domain protein [Sulfolobus islandicus M.16.4] Length = 323 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 33/258 (12%) Query: 6 IESVRFFVR------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 IE VR V+ LV IL+AVSGG DS+ L L ++ K A +++ Sbjct: 28 IEDVRKRVKLEAQKQELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNIN 82 Query: 60 HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAR 103 +R ++V+ + + L I +K Sbjct: 83 EGIRGYNRSEDVKKLEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCG 142 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R LI+E ++A + T H DD+++T+ + R + + L G I+ + Sbjct: 143 GFRRKLINEAGIKVDADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFV 201 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYL 218 +P + + + + + E + R +VR + ++ L Sbjct: 202 MRVKPLRKIYEWETTIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLR 261 Query: 219 KMKKFQDLRVKVNNAVAM 236 +++F ++ K+ + Sbjct: 262 ILEQFDEISEKLKKEHRL 279 >gi|227827811|ref|YP_002829591.1| PP-loop domain protein [Sulfolobus islandicus M.14.25] gi|227830521|ref|YP_002832301.1| PP-loop domain protein [Sulfolobus islandicus L.S.2.15] gi|229579334|ref|YP_002837732.1| PP-loop domain protein [Sulfolobus islandicus Y.G.57.14] gi|229581906|ref|YP_002840305.1| PP-loop domain protein [Sulfolobus islandicus Y.N.15.51] gi|284998016|ref|YP_003419783.1| PP-loop domain protein [Sulfolobus islandicus L.D.8.5] gi|227456969|gb|ACP35656.1| PP-loop domain protein [Sulfolobus islandicus L.S.2.15] gi|227459607|gb|ACP38293.1| PP-loop domain protein [Sulfolobus islandicus M.14.25] gi|228010048|gb|ACP45810.1| PP-loop domain protein [Sulfolobus islandicus Y.G.57.14] gi|228012622|gb|ACP48383.1| PP-loop domain protein [Sulfolobus islandicus Y.N.15.51] gi|284445911|gb|ADB87413.1| PP-loop domain protein [Sulfolobus islandicus L.D.8.5] Length = 323 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 33/258 (12%) Query: 6 IESVRFFVR------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 IE VR V+ LV IL+AVSGG DS+ L L ++ K A +++ Sbjct: 28 IEDVRKRVKLEAQKQELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNIN 82 Query: 60 HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAR 103 +R ++V+ + + L I +K Sbjct: 83 EGIRGYNRSEDVKKLEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCG 142 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163 R LI+E ++A + T H DD+++T+ + R + + L G I+ + Sbjct: 143 GFRRKLINEAGIKVDADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFV 201 Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYL 218 +P + + + + + E + R +VR + ++ L Sbjct: 202 MRVKPLRKIYEWETTIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLR 261 Query: 219 KMKKFQDLRVKVNNAVAM 236 +++F ++ K+ + Sbjct: 262 ILEQFDEISEKLKKEHRL 279 >gi|307209204|gb|EFN86311.1| ATP-binding domain-containing protein 3 [Harpegnathos saltator] Length = 340 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 17/211 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++R K+ +S+D + D ++ V Sbjct: 45 KLFKPGDKVAIGASGGKDSTVLAYILKTL-NERYKYKLDLFLLSIDEGITGYRDDSLKTV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 I ++S+K + R + A + I Sbjct: 104 MQNRDDYSIPLKILSYKELYGWTMDAIVAEIGRKNNCTFCGVFRRQALDRGAALLGVDCI 163 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181 T H DD ETV M R + L I + + +P ++I + Sbjct: 164 ATGHNADDIAETVLMNVLRGDIAR---LQRCTSVITAGADSIMRCKPLKYAYEKEIVMYA 220 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +++ + R R F++D++ Sbjct: 221 YFKHLVYFSTECIYAPNAYRGYARAFLKDLE 251 >gi|260813136|ref|XP_002601275.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae] gi|229286568|gb|EEN57287.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae] Length = 457 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 18/204 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L + +L++R + +SVD + D + V + Sbjct: 52 VAIAASGGKDSTVLAHLMK-LLNERHDYGLTLFLLSVDEGITGYRDDSLETVKRNQQQYE 110 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + VVS+K R + A + I+T H DD Sbjct: 111 LPLKVVSYKELYGWTMDEIVRQIGLKNNCTFCGVFRRQALDRGAMMLGVDKIVTGHNADD 170 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188 ETV M R + C I+ I R PF ++I + + + + Sbjct: 171 VAETVIMNVLRGDIAR----LQRCTAIVTGTEGAIPRCKPFKYTYEKEIVMYAYFKKLDY 226 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 R R +++D++ Sbjct: 227 FSTECIYSPNAYRGHARTYLKDLE 250 >gi|293603062|ref|ZP_06685496.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553] gi|292818456|gb|EFF77503.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553] Length = 325 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 20/222 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L + R+ K + A+++D + D + Sbjct: 50 GDRVMVCLSGGKDSYAMLDILLQLQK-RAPFKFELIAVNLD-QKQPGFPD--HILPQYLK 105 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + + + + + + R ++ A + AT I H DD Sbjct: 106 DLGVPFHIETQDTYSIVTRVLEEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDDI 165 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T ++ KGM + D + RP D+ ++ + Sbjct: 166 LATFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVAETDLIAYAELKQFPII-- 219 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R ++D D F L V Sbjct: 220 PCNLCGSQENLKRKEVGRMIKDWDKQHPGRSWNVFNALSRVV 261 >gi|309389041|gb|ADO76921.1| PP-loop domain protein [Halanaerobium praevalens DSM 2228] Length = 256 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 15/167 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS LL+ L + S A+ VD +++ + D C Sbjct: 26 GDRIAVGLSGGKDSAFLLLVLK-IFSKYFSKDFMLKAVHVDPGFDDSSS---LALKDFCQ 81 Query: 79 RLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L+I ++ + NS + + R I + K N + H DD +E Sbjct: 82 QLKIDLKIIKSEIALYINSTEASNPCSKCAHFRKGAIINYLKQNNFNKLAFGHHLDDAVE 141 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179 T M L + D N + I RP + R I Sbjct: 142 TYLM-----SIIYSGQLQTLAPKRFLDKNKVEIIRPLIYLRESVIIR 183 >gi|302694583|ref|XP_003036970.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8] gi|300110667|gb|EFJ02068.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8] Length = 354 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R + + SGG DS L L ++ ++R + +S+D + D + Sbjct: 45 ARLFQRGDRVAIGASGGKDSTVLAYVLKTL-NERYDYGLDLFLLSIDEGIMGYRDDSLET 103 Query: 73 VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121 V + + ++S+ + R + A ++ Sbjct: 104 VKRNQQQYDMPLKILSYDELYGWTMDRIVSQVGKKNNCTFCGVFRRQALDRGAAMLHVDH 163 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179 I+T H DD ETV M R + G C +I I R PF ++I Sbjct: 164 IVTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTQGEDTIKRSKPFKYAYEKEIVM 219 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R F++D++ Sbjct: 220 YAYFKKLDYFSTECIYSPDAYRGHARVFLKDLE 252 >gi|262171527|ref|ZP_06039205.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451] gi|261892603|gb|EEY38589.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451] Length = 310 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FELVAVNLD-QKQPG---FPAHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKIKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267 Query: 247 RSIIAISQDILNIDSTLLF 265 + I+ + D + Sbjct: 268 KDSGVINGGDIGFDKEEIA 286 >gi|150008723|ref|YP_001303466.1| hypothetical protein BDI_2113 [Parabacteroides distasonis ATCC 8503] gi|255014521|ref|ZP_05286647.1| hypothetical protein B2_11474 [Bacteroides sp. 2_1_7] gi|256841242|ref|ZP_05546749.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13] gi|149937147|gb|ABR43844.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] gi|256737085|gb|EEU50412.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13] Length = 248 Score = 98.1 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%) Query: 1 MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + ++ F L+ ILV +SGG DS+ L+ L S + + Sbjct: 10 LFRKIEDKIKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68 Query: 58 V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109 + + +C + E Y+ + V ++ + R Sbjct: 69 IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E AK I H DD LET+ M +G + + ++ I RP Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLRMDKFDMEIIRPM 178 Query: 170 LRCRREDIRSFLLQRN 185 ++ + Sbjct: 179 CLVEERELIQVAAWKG 194 >gi|260772837|ref|ZP_05881753.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii CIP 69.14] gi|260611976|gb|EEX37179.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii CIP 69.14] Length = 310 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ I FS I+V+ L + ++ + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKS---APITFSLIAVN--LDQKQPGFPEHILPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + ++ A R ++ AK + AT I H DD Sbjct: 95 QELGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRAAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 IIETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYANHRAYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R +++ + D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNMQRQNIKQMLNAWDKQFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267 Query: 247 RSIIAISQDILNIDST 262 R I+ + D Sbjct: 268 RDSGVINGGDIGFDKE 283 >gi|119720174|ref|YP_920669.1| PP-loop domain-containing protein [Thermofilum pendens Hrk 5] gi|119525294|gb|ABL78666.1| PP-loop domain protein [Thermofilum pendens Hrk 5] Length = 323 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 27/202 (13%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +E R R +L AVSGG+DS +L L F + +A+ VD + Sbjct: 37 LGALERYRLVERGW----RVLAAVSGGADSAAMLGVLAKASVALGF---RLAAVHVDLGI 89 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISE 112 ++ R V ++C L + +VVS A R R L++ Sbjct: 90 EGFSEASRRAVEELCGSLGVPFAVVSLPEVAGVGLPELARRARRPVCSVCGAVKRYLVNV 149 Query: 113 HAKTINATLIMTAHTFDDQ----LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 A A ++ H DD ++ + + A+ G T + RP Sbjct: 150 AAAEAGADVVALGHHADDLLAYAVKNFLFQRLPELAKLG------PKTESTGGLVGRVRP 203 Query: 169 FLRCRREDIRSFLLQRNISWCE 190 + + + + + E Sbjct: 204 LYEVYKSEASLYARLSGLPFTE 225 >gi|150951581|ref|XP_001387923.2| conserved protein of the N-type ATP pyrophosphatase superfamily [Scheffersomyces stipitis CBS 6054] gi|284018076|sp|A3GGB3|CTU1_PICST RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|149388712|gb|EAZ63900.2| conserved protein of the N-type ATP pyrophosphatase superfamily [Pichia stipitis CBS 6054] Length = 376 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ +G I +S+D ++ D + V Sbjct: 55 KLFSPGDKVAIGASGGKDSTVLASVLKTLNERYDYGLI-LVLLSIDEGIKGYRDDSLATV 113 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+++ R + A + + Sbjct: 114 KRNQVQYEMPLEIISYRDLYNWTMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLGINHV 173 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + L C I I R PF +++I + Sbjct: 174 VTGHNADDMAETVLMNLLRGDTAR---LEKSCAIITQSAGSPIKRSKPFKYTYQKEIVLY 230 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R ++ ++ Sbjct: 231 AHYKKLDYFSTECTYAPEAFRGTARELLKSLE 262 >gi|323474879|gb|ADX85485.1| PP-loop domain protein [Sulfolobus islandicus REY15A] gi|323477620|gb|ADX82858.1| PP-loop domain protein [Sulfolobus islandicus HVE10/4] Length = 323 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 27/244 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72 + LV IL+AVSGG DS+ L L ++ K A +++ +R ++V+ Sbjct: 42 QELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNINEGIRGYNRSEDVKK 96 Query: 73 VSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTI 117 + + L I +K R LI+E + Sbjct: 97 LEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCGGFRRKLINEAGIKV 156 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +A + T H DD+++T+ + R + + L G I+ + +P + + Sbjct: 157 DADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFVMRVKPLRKIYEWET 215 Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNN 232 + + + E + R +VR + ++ L +++F ++ K+ Sbjct: 216 TIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLRILEQFDEISEKLKK 275 Query: 233 AVAM 236 + Sbjct: 276 EHRL 279 >gi|313221651|emb|CBY36134.1| unnamed protein product [Oikopleura dioica] Length = 390 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 13/203 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L+ + +L++R +K +S+D + + V Sbjct: 49 SGQKVAIGASGGKDSAVLMQVMK-ILNERYDYGLKLCLLSIDEGISGYRDHSLEEVKFHS 107 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + ++S+K+ + R + A + ++ T H Sbjct: 108 NNYGLELKILSYKDLYNWSMDEIVSVAGRKSNCTFCGVFRRQALDRGAWQLGVDIVATGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + T + +P +I + + Sbjct: 168 NGDDVAETVLMNMLRGDVGR-LSRCTAISTADDPSGIPRVKPLKYQYEAEIVKYARHSKV 226 Query: 187 SWCEDPSNTDDRFERVRVRRFVR 209 + R ++R ++R Sbjct: 227 RYFSTECTYAPGAHRGQIREYLR 249 >gi|292654746|ref|YP_003534643.1| n-type ATP pyrophosphatase superfamily protein [Haloferax volcanii DS2] gi|291372586|gb|ADE04813.1| n-type ATP pyrophosphatase superfamily [Haloferax volcanii DS2] Length = 321 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 19/218 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L L +I+ A+++ + V ++ Sbjct: 53 PQTWVIGLSGGKDSVVLTHILDDTFG--RDPRIELVALTIHEGIEGYRDKSVDACVELAE 110 Query: 79 RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L I H +V++++ A R L+ A + A ++T H Sbjct: 111 DLDIHHELVTYEDEFGVQMDDVVEKDPENMAACAYCGVFRRDLLERFADELGADKLLTGH 170 Query: 127 TFDDQLETVYMRSQRDYA---EKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFL 181 DD+ +T M K S D +I R P +++ + Sbjct: 171 NLDDEAQTALMNFFEGDLKQVAKHFDASIGDFEKRRDAGEFIPRAKPLRDVPEKEVALYA 230 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +++ R +++ + ++ + + Sbjct: 231 HLKDLPAHITECPHSSEAYRGEIQQLLLKLEENHPGTR 268 >gi|301057224|ref|ZP_07198353.1| PP-loop family protein [delta proteobacterium NaphS2] gi|300448675|gb|EFK12311.1| PP-loop family protein [delta proteobacterium NaphS2] Length = 266 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 34/229 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + H+LVA+SGG DS+ LL L L R + +A+ VD A + Sbjct: 20 KMIRDGDHVLVAISGGKDSLALLWILRERLK-RIPISYQITAVHVDPGFGGNAT---ASI 75 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLIMTAHT 127 + + ++ G R L+ E A + I H Sbjct: 76 ESFLTSNGFDYRIIESDIGPRAHGAENRENPCFLCSRMRRKLLFEMADALECNRIALGHH 135 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF------ 180 DD +ET+++ G +S M L+ L + RP + IR + Sbjct: 136 KDDIIETLFLNIF-----YGASISTMLPVQELFGGKLTLIRPLYLLDEDLIRRYGEKMDF 190 Query: 181 ------LLQRNISWCEDPSNTDDRFER-VR-----VRRFVRDIDLHALY 217 + ED N + F R R + +++++ L Sbjct: 191 PEIRLNCPSAGATKREDIKNMLNGFYRQNRKIKGNIFHALQNVNPEYLP 239 >gi|13541276|ref|NP_110964.1| ATPase [Thermoplasma volcanium GSS1] Length = 309 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 19/211 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS L LH +L +R KIK A +VD + + +C+ L I Sbjct: 53 VALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLGID 110 Query: 84 HSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 H +S+ +S P A R LI+E A +A + DD Sbjct: 111 HETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDDYS 170 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 +++ M + ++ + +S D + + P +++ + + +I + D Sbjct: 171 QSILMNVAKGDFDRFIRMSPQTDRKV--GLVRRIAPLRTILEKEVVLYAVTNDIPF--DS 226 Query: 193 S--NTDDRFERVRVRRFVRDIDLHALYLKMK 221 S R +R R V + K Sbjct: 227 SWCPYYSRAQRNVFREVVNKLSEENPSTKFA 257 >gi|14324659|dbj|BAB59586.1| hypothetical protein [Thermoplasma volcanium GSS1] Length = 312 Score = 98.1 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 19/211 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 VA+SGG DS L LH +L +R KIK A +VD + + +C+ L I Sbjct: 56 VALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLGID 113 Query: 84 HSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 H +S+ +S P A R LI+E A +A + DD Sbjct: 114 HETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDDYS 173 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 +++ M + ++ + +S D + + P +++ + + +I + D Sbjct: 174 QSILMNVAKGDFDRFIRMSPQTDRKV--GLVRRIAPLRTILEKEVVLYAVTNDIPF--DS 229 Query: 193 S--NTDDRFERVRVRRFVRDIDLHALYLKMK 221 S R +R R V + K Sbjct: 230 SWCPYYSRAQRNVFREVVNKLSEENPSTKFA 260 >gi|148643088|ref|YP_001273601.1| ATPase [Methanobrevibacter smithii ATCC 35061] gi|222445325|ref|ZP_03607840.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii DSM 2375] gi|261350114|ref|ZP_05975531.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] gi|148552105|gb|ABQ87233.1| predicted ATPase, PP-loop family [Methanobrevibacter smithii ATCC 35061] gi|222434890|gb|EEE42055.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii DSM 2375] gi|288860900|gb|EFC93198.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374] Length = 288 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 13/218 (5%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VA+SGG DS+ L AL + ++ A+SVD + + + D +L Sbjct: 33 IAVALSGGKDSVLTLHALKNYQ---NYLDFDLVAVSVDEGIEGYRQHGIDAAIDNAEKLD 89 Query: 82 IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + S+K + R ++++ A + A I T H DD++ Sbjct: 90 VKLVQKSFKIEEGFALDDIYSGFKSACIPCGVFRRNILNKTAYDLGADKIATGHNLDDEI 149 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ++ M R K D +++ + +P +++ ++ + +I+ D Sbjct: 150 QSFLMSFARGDLIKFSKFGPELD-VIHPKLIPRIKPLWNTPEKEVGTWAILNDINIHLDE 208 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 R +++ F+ + + +K + + + Sbjct: 209 CPYSHLSLRAKIKEFLNNNEDIYPGIKNNIMESFQKIL 246 >gi|258623292|ref|ZP_05718298.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus VM573] gi|262165675|ref|ZP_06033412.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223] gi|258584424|gb|EEW09167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus VM573] gi|262025391|gb|EEY44059.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223] Length = 310 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FELVAVNLD-QKQPG---FPAHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267 Query: 247 RSIIAISQDILNIDSTLLF 265 + I+ + D + Sbjct: 268 KDSGVINGGDIGFDKEEIA 286 >gi|145543226|ref|XP_001457299.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124425115|emb|CAK89902.1| unnamed protein product [Paramecium tetraurelia] Length = 322 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 15/213 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + I +A SGG DS L+ + ++L+ + + +S+D ++ D + V Sbjct: 45 QMFKPGEKIAIAASGGKDSTVLVHVI-TLLNKKYNYGLHLYLLSIDEGIKGYRDDSLETV 103 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + ++S+K R + A + I Sbjct: 104 KQNQITYDLELKILSYKELFNWSMDEVVAQIGLNNNCTYCGVFRRQSLDRGAIQLGVDKI 163 Query: 123 MTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +T H DD ET M R K + D L +PF ++I Sbjct: 164 ITGHNADDMAETFLMNLLRGDIFRLPKSTAIITGDDGDNGIATLPRCKPFKYTYEKEIVM 223 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R VR +++++ Sbjct: 224 YAHYKKLIYFSTECTYSPNAFRGHVRELIKNLE 256 >gi|298375982|ref|ZP_06985938.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] gi|298267019|gb|EFI08676.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] Length = 248 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%) Query: 1 MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + ++ F L+ ILV +SGG DS+ L+ L S + + Sbjct: 10 LFRKIEDKIKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68 Query: 58 V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109 + + +C + E Y+ + V ++ + R Sbjct: 69 IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E AK I H DD LET+ M +G + + ++ I RP Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLKMDKFDMEIIRPM 178 Query: 170 LRCRREDIRSFLLQRN 185 ++ + Sbjct: 179 CLVEERELIQVAAWKG 194 >gi|169350219|ref|ZP_02867157.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552] gi|169293002|gb|EDS75135.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552] Length = 252 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 16/220 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V VSGG DS+ LL L S+ + K + V+ V C + Sbjct: 30 DKICVGVSGGKDSVLLLYCL-SLYKKFADVKFDVVGVHVEMGF-PNMDFSE--VDAFCRK 85 Query: 80 LRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I ++ + + + + AL+ + AK + AH DD Sbjct: 86 NEIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYGCNKVAFAHHGDDA 145 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET++M G + L ++ RP + DI + + + NI E Sbjct: 146 VETLFMNMVYG----GKIATFTPKMYLSRTDMNFIRPLVYAYESDIVAAVKEANIPIVES 201 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 D +R ++ + D+ K L + N Sbjct: 202 TCPADKHTKREEFKQLLNDLYKKYPQAKNNLLTSLTNEKN 241 >gi|313903353|ref|ZP_07836745.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter subterraneus DSM 13965] gi|313466441|gb|EFR61963.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter subterraneus DSM 13965] Length = 304 Score = 97.7 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 26/198 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ R F ++ ILVAVSGG DS+ + L + + +D + Sbjct: 36 RAIKEHRMFTKN----DRILVAVSGGKDSLAVWDVLLRL-------GYEAHGFYIDLGIG 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112 E +K V + + +VS + + G AR+ R L ++ Sbjct: 85 EYSKRSTEKVRNFAAERGATLRIVSVE-EEYGLGTQELARKVRRPACSACGLNKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A +I+T H DD+ T+ + + T + +P R Sbjct: 144 VALEGGYDVIVTGHNLDDEAATLLSNVLHWNTGYLARQAPVLEATAP--NLVKKVKPLFR 201 Query: 172 CRREDIRSFLLQRNISWC 189 +I S+ + R I + Sbjct: 202 LTEREIASYCVLRGIDYI 219 >gi|152981386|ref|YP_001355128.1| hypothetical protein mma_3438 [Janthinobacterium sp. Marseille] gi|205830597|sp|A6T3N1|TTCA_JANMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|151281463|gb|ABR89873.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 317 Score = 97.7 bits (242), Expect = 4e-18, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS LL L ++ +R+ K A+++D + D + Sbjct: 55 GDKVMVCLSGGKDSYALLDILMTL-RERAPIKFDIVAVNLD-QKQPNFPD--HILPAYLK 110 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + + + R ++ A + A I H DD Sbjct: 111 QLDIPFHIENQDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGANKIALGHHRDDI 170 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 +ET ++ G + GM + D I RP + D + +N Sbjct: 171 METFFLNMF-----FGAKIKGMPPKLQSDDGKHIVIRPLAYVKEADTERYAEVKNFPII 224 >gi|167750534|ref|ZP_02422661.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702] gi|167656460|gb|EDS00590.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702] Length = 377 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 27/225 (12%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM + + F ++KF + + + Sbjct: 136 DRIAVCISGGKDSMLMAKLFQELHRHSDFPFEVKFIV-----MDPGYSTANRNVIEENAR 190 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 +L+I + + R + +AK++ I H +DD +ET Sbjct: 191 KLKIPIEIFESDIFDSVYNIEKSPCYLCARMRRGHLYNYAKSLGCNKIALGHHYDDVIET 250 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + M G + M + + + RP R +DI+++ + + + Sbjct: 251 ILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNGLHFIQCA 305 Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 N ++R +RV +++ + + ++ F+ + Sbjct: 306 CKFTDTCTTCNNEENRSKRVEIKQLIAKLKQTNPEVEKHIFKSVE 350 >gi|94985996|ref|YP_605360.1| PP-loop domain-containing protein [Deinococcus geothermalis DSM 11300] gi|205830577|sp|Q1IX43|TTCA_DEIGD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|94556277|gb|ABF46191.1| tRNA s(2)C-32 sulfurtransferase [Deinococcus geothermalis DSM 11300] Length = 289 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 21/191 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L + I F ++V+ L + ++V Sbjct: 26 RMIEEGDRVMVCLSGGKDSYTLLDILLHLQKR---APIHFEVVAVN--LDQGQPGFPKHV 80 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + +RL + +++ A R ++ HA+ I AT I Sbjct: 81 LPEYLTRLGVPFDILTEDTYSIVKEKTPEGKTTCALCSRLRRGILYRHAREIGATKIALG 140 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184 H DD LET++M G L M + D + RP DI + + Sbjct: 141 HHRDDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYLAERDIERYAQAK 195 Query: 185 NISWCEDPSNT 195 P N Sbjct: 196 GFPII--PCNL 204 >gi|121730376|ref|ZP_01682729.1| conserved hypothetical protein [Vibrio cholerae V52] gi|121627872|gb|EAX60459.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 309 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYAIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|15641443|ref|NP_231075.1| hypothetical protein VC1432 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590934|ref|ZP_01678255.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|153817918|ref|ZP_01970585.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153823754|ref|ZP_01976421.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227081604|ref|YP_002810155.1| hypothetical protein VCM66_1388 [Vibrio cholerae M66-2] gi|229504993|ref|ZP_04394503.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] gi|229511338|ref|ZP_04400817.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] gi|229518456|ref|ZP_04407900.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] gi|229607996|ref|YP_002878644.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] gi|254848552|ref|ZP_05237902.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745811|ref|ZP_05419759.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] gi|262158910|ref|ZP_06030022.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] gi|298498489|ref|ZP_07008296.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|81544966|sp|Q9KS29|TTCA_VIBCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790148|sp|C3LMC8|TTCA_VIBCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|9655931|gb|AAF94589.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547209|gb|EAX57334.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|126511545|gb|EAZ74139.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|126518723|gb|EAZ75946.1| conserved hypothetical protein [Vibrio cholerae B33] gi|227009492|gb|ACP05704.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345171|gb|EEO10145.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9] gi|229351303|gb|EEO16244.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33] gi|229357216|gb|EEO22133.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX 330286] gi|229370651|gb|ACQ61074.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae MJ-1236] gi|254844257|gb|EET22671.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736886|gb|EET92283.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS 101] gi|262029095|gb|EEY47747.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE 91/1] gi|297542822|gb|EFH78872.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 310 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYAIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|59711918|ref|YP_204694.1| C32 tRNA thiolase [Vibrio fischeri ES114] gi|197335040|ref|YP_002156106.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11] gi|75353997|sp|Q5E590|TTCA_VIBF1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790149|sp|B5FE41|TTCA_VIBFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|59480019|gb|AAW85806.1| predicted C32 tRNA thiolase [Vibrio fischeri ES114] gi|197316530|gb|ACH65977.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11] Length = 307 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L S+ A+++D ++ + + Sbjct: 36 GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FDLIAVNLD---QKQPGFPAHILPEYLE 91 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + + +V + R ++ AK + AT I H DD Sbjct: 92 KLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ G L GM ++ D + RP CR +DI + R+ Sbjct: 152 LETMFLNMF-----YGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRDYPII- 205 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R V++ + D F ++ V + +A R Sbjct: 206 -PCNLCGSQPNMQRQNVKQMLNTWDKQFPGRIETMFTAMQNVVPSHLADFNTFDFKSINR 264 Query: 248 SIIAISQDILNIDSTLL 264 I+ + D + Sbjct: 265 DSGVINGGDIGFDKEEM 281 >gi|197117012|ref|YP_002137439.1| tRNA (2-thio-C32)-thioltransferase [Geobacter bemidjiensis Bem] gi|253699272|ref|YP_003020461.1| PP-loop domain protein [Geobacter sp. M21] gi|254790130|sp|B5ED57|TTCA_GEOBB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|259550626|sp|C6E087|TTCA_GEOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|197086372|gb|ACH37643.1| tRNA (2-thio-C32)-thioltransferase [Geobacter bemidjiensis Bem] gi|251774122|gb|ACT16703.1| PP-loop domain protein [Geobacter sp. M21] Length = 255 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77 + VAVSGG DS +L L ++ R+ + + AI++D R D ++ + Sbjct: 29 GDRVAVAVSGGKDSYTMLHMLETLRR-RAPVRYELVAINIDSGYRGYRADIIEEHLREHG 87 Query: 78 SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + H + + +P + + + + A+ + H DD +ET Sbjct: 88 FTYHMEKTDHYDIISEKRRPNSSYCSICARLKRGTLYTLAQQYGCNKLALGHHMDDFIET 147 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 + + + K M S + D + + RP + ++I F Sbjct: 148 LLLNQFFVGSLKAMAPSMLADNGV----TTVIRPLVYVPEKEIIPFSRNN 193 >gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304] gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 304 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 18/214 (8%) Query: 8 SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 V+ V+ + I +A+SGG DS+ L L+ + RS ++F AI++D + Sbjct: 34 RVKLAVKKYDMIQKGDRIAIALSGGKDSVTLAFVLNKLYGFRS--DLEFFAITIDEGIAG 91 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHA 114 V V +L + H VVS++ + R L++ A Sbjct: 92 YRPPTVEIARKVTEQLGMEHLVVSFEENFGMTLDEMVKRGDKKPCTYCGVFRKYLLNRTA 151 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + AT + T H DD+ +T+ + E+ ++ + + + + +PF Sbjct: 152 REMGATKLATGHNLDDETQTILLNFLNADMER---MARLVPQRVQEGLVVRIKPFRYVYE 208 Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208 +++ + + D R VR F+ Sbjct: 209 KEVVVYGFLHELPMDFDECPYSHFPVRAAVRDFL 242 >gi|221058074|ref|XP_002261545.1| PP-loop family protein [Plasmodium knowlesi strain H] gi|194247550|emb|CAQ40950.1| PP-loop family protein, putative [Plasmodium knowlesi strain H] Length = 404 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 13/152 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I +AVSGG DS L L + ++ K +++D ++ D ++ V + Sbjct: 35 KDKICIAVSGGKDSSVLAHVLVHIKRKYNY-KWDLFLLAIDEGIKGYRDDSLKIVFKLQE 93 Query: 79 RLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + V+ +++ + R + A NAT ++T H Sbjct: 94 KYNLPLKVLKFEDIFTYTMDTVVSFIGKKNNCTVCGVFRRQAMERGALLFNATKLVTGHN 153 Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTIL 158 DD ET+ M R EK G+ M + + Sbjct: 154 ADDLAETILMNMCRGDLEKLAKGVDSMSEMKM 185 >gi|159905703|ref|YP_001549365.1| PP-loop domain-containing protein [Methanococcus maripaludis C6] gi|159887196|gb|ABX02133.1| PP-loop domain protein [Methanococcus maripaludis C6] Length = 324 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 33/206 (16%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRE--TAKDEV 70 + ILV +SGG DS+ LL L R +K A++VD +R + V Sbjct: 72 IFPKDKILVGLSGGKDSLALLHLL---EPYRRKYGVKIYAVTVDLNINGIRPWVQSNKNV 128 Query: 71 RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKTI 117 +S+ C L I H +++ S+ G+ + R +++ +AK Sbjct: 129 EKISEHCKNLNIPHEIIANDGNVVEMSKILSENTKGIEYSPCFSCSMVRRHVLTNYAKNN 188 Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWI------- 165 + I HT +D +T+ + K + + +T + + + Sbjct: 189 FETDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKNFNETDVDFKDFKLNLKSCCM 248 Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191 RP L E I L++ I + D Sbjct: 249 IRPMLNVSEEKIVKALVECGIEYYHD 274 >gi|288561212|ref|YP_003424698.1| PP-loop family protein [Methanobrevibacter ruminantium M1] gi|288543922|gb|ADC47806.1| PP-loop family protein [Methanobrevibacter ruminantium M1] Length = 285 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 12/215 (5%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ I +A+SGG DS+ L AL + F + AI VD + + + Sbjct: 24 QLIKEGEKIAIALSGGKDSVLTLHALKNYKDSADF-DFELVAILVDEGIDGYRQHGIDAA 82 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMT 124 + L I S+K + R ++++ A I A I T Sbjct: 83 VNNAQLLEIPLIQKSFKEEEGFALDDIYSYFKSACIPCGVFRRNILNKTAYEIGADKIAT 142 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD++++ M R K D +++ + +P +++ + + Sbjct: 143 GHNLDDEIQSFLMSFSRGDTVKFSKFGPELD-QIHEKLVPRIKPLWNTPEKEVGMWAILN 201 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + D + R +++ F+ + K Sbjct: 202 GVEIHLDECPYSNLSLRAKIKEFLNKTESKHPGTK 236 >gi|145341094|ref|XP_001415650.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144575873|gb|ABO93942.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 199 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 22/193 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++++ F + IL+ +SGG DS+ +L L ++S G + +VD Sbjct: 14 QAIQDF-DMIQPGDRILLGLSGGKDSLAMLHILMCMMSRYPPGTFTLACATVDPGT---- 68 Query: 67 KDEVRY----VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKT 116 + + L I + + + A + + + Sbjct: 69 ---EAFNPRPLIPYVESLGIEYHYLEEEIMAMADAHMTGDSICAFCARMKRGALYTCCRK 125 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 ++ A DD +E+ M G + ++ + ++ + RP + R + Sbjct: 126 YGYNKLVLAQHLDDCVESFLM----STMYNGTMRTMKASYLIDEGDITVIRPAIYLREKA 181 Query: 177 IRSFLLQRNISWC 189 +R F + + Sbjct: 182 LRDFSYEAGLPVI 194 >gi|303242462|ref|ZP_07328943.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2] gi|302589986|gb|EFL59753.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2] Length = 237 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 18/221 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYV 73 + I V VSGG DS+ L + +SF K + A+++ + E ++ V Sbjct: 21 IQEGDRIAVGVSGGKDSL---ALLVLLKQLQSFFPAKFELEAVTLTMGIGEF---DLTPV 74 Query: 74 SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++C + + +++ ++ +T + + + AK ++ + AH Sbjct: 75 KELCKSIGVNYTIEETVIGKIVFEARDETNPCSLCANLKRGALHNVAKRLDCNKVALAHH 134 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET + G + T L L++ RP + + ++ ++ N+ Sbjct: 135 RDDVIETFLL----STLYAGKFQTFSPVTYLKRKELYLIRPMIYIEEKHVKEYIKANNLV 190 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 P + D + +R ++ + ++ +K F ++ Sbjct: 191 TVPSPCHVDGKTKRQYIKELLMEMHKENRNIKNNIFGAIKR 231 >gi|146412528|ref|XP_001482235.1| hypothetical protein PGUG_05255 [Meyerozyma guilliermondii ATCC 6260] Length = 369 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++G + +S+D + D + V Sbjct: 52 QLFKPGDKVAIGASGGKDSTVLASVLKTLNEKYNYG-LTLVLLSIDEGIVGYRDDSLATV 110 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+K+ R + A + + Sbjct: 111 KRNQIQYEMPLEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLEIDHV 170 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + L C + I R PF +++I + Sbjct: 171 VTGHNADDMAETVLMNLLRGDIAR---LERSCSILTLSEGSPIKRSKPFKYTYQKEIVLY 227 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R ++ ++ Sbjct: 228 AHYKKLDYFSTECSYAPEAFRGTARELLKALE 259 >gi|333031359|ref|ZP_08459420.1| PP-loop domain protein [Bacteroides coprosuis DSM 18011] gi|332741956|gb|EGJ72438.1| PP-loop domain protein [Bacteroides coprosuis DSM 18011] Length = 249 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 36/211 (17%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---- 58 I+ +R + R + HIL+A+SGG DS+ L + + K K SA V Sbjct: 16 RRLIQGIRDY-RLIEDGDHILIAISGGKDSLALAELMAERVKILK-PKFKLSAAHVVMTN 73 Query: 59 -----DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYAL 109 DH Y+ L I ++ K ++ + R L Sbjct: 74 VSYESDH----------SYIQHFIEDLGIPFYLLETSFDPSADKRKSPCFLCSWNRRKQL 123 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 AKT+ I H DD L T+ M + + M +D+ I RP Sbjct: 124 FE-LAKTLGCNKIALGHHMDDILATLLMNMT--FQGSFSTMPPMLKMSKFDM--TIIRPM 178 Query: 170 LRCRRED------IRSFLLQRNISWCEDPSN 194 +D +R++ Q E +N Sbjct: 179 CLIEEKDLIALSALRAYKKQIKNCPYESETN 209 >gi|229521531|ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] gi|229341629|gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM 11079-80] Length = 310 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|153217159|ref|ZP_01950923.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|153803581|ref|ZP_01958167.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|153827170|ref|ZP_01979837.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|153830588|ref|ZP_01983255.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515797|ref|ZP_04405256.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] gi|229523484|ref|ZP_04412889.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] gi|254286121|ref|ZP_04961081.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|262190246|ref|ZP_06048519.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] gi|297579020|ref|ZP_06940948.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|124113825|gb|EAY32645.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124120879|gb|EAY39622.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|148873915|gb|EDL72050.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|149738932|gb|EDM53254.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150423790|gb|EDN15731.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|229337065|gb|EEO02082.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv. albensis VL426] gi|229347566|gb|EEO12526.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21] gi|262033864|gb|EEY52331.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT 5369-93] gi|297536614|gb|EFH75447.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 310 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|290475465|ref|YP_003468353.1| hypothetical protein XBJ1_2463 [Xenorhabdus bovienii SS-2004] gi|289174786|emb|CBJ81587.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 304 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 24/264 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + I+V +SGG DS LL L ++ A+++D + + Sbjct: 28 FKMIEEGDRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFSLVAVNLD-QKQPG---FPEH 82 Query: 73 VS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMT 124 + L I + +V + R ++ A + AT I Sbjct: 83 ILPAYLEELGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIAL 142 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD L+TV++ G L GM ++ D I RP CR +DI + Sbjct: 143 GHHRDDILQTVFLNMF-----YGGKLKGMPPKLISDDGKHIVIRPLAYCREKDIERYAEA 197 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 R P N +R ++ +RD D F+ ++ V + ++ Sbjct: 198 RAFPII--PCNLCGSQPNLQRQVIKDLLRDWDKRYPGRIETMFRAVQNVVPSHLSDFNLF 255 Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264 I L D L Sbjct: 256 DFKNITHGSEVIDGGDLAFDREEL 279 >gi|262038871|ref|ZP_06012218.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] gi|261747122|gb|EEY34614.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] Length = 273 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 16/191 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V F L+ I + VSGG DS+ L+ H + DRS +F A+S++ Sbjct: 36 KFVKAVNDF--DLIEDGDKIAIGVSGGKDSLLLVKLFHELKKDRSR-NFEFKAVSLNPGF 92 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTI 117 RE+ ++ L I +++ N K + + R ++ + + + Sbjct: 93 RES---DLSNFKRNLENLNIDCAIIDTNIWEIANEKAKDYPCFLCAKMRRGILYKKVEEL 149 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + NL + RP + R DI Sbjct: 150 GYNKLTLGHHFDDVIETTMINMF----YAGTLKTMTPKVKSTSGNLSLIRPLIYVREADI 205 Query: 178 RSFLLQRNISW 188 + + I Sbjct: 206 IEYTKENGIRP 216 >gi|311103569|ref|YP_003976422.1| PP-loop family protein [Achromobacter xylosoxidans A8] gi|310758258|gb|ADP13707.1| PP-loop family protein [Achromobacter xylosoxidans A8] Length = 322 Score = 97.3 bits (241), Expect = 5e-18, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 20/222 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L + R+ K + A+++D + D + + Sbjct: 47 GDRVMVCLSGGKDSYAMLDILLQLQK-RAPFKFELIAVNLD-QKQPGFPD--HILPEYLK 102 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + + + + + + R ++ A + AT I H DD Sbjct: 103 TLGVPFHIETQDTYSIVTRVLEEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDDI 162 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T ++ KGM + D + RP D+ ++ + Sbjct: 163 LGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPETDLIAYAELKQFPII-- 216 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N +R V R +++ D F L V Sbjct: 217 PCNLCGSQQNLKRKEVGRMIKEWDKQHPGRSWNVFNALSRVV 258 >gi|78484527|ref|YP_390452.1| PP-loop [Thiomicrospira crunogena XCL-2] gi|78362813|gb|ABB40778.1| PP-loop family protein [Thiomicrospira crunogena XCL-2] Length = 279 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 22/230 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72 + + IL+ +SGG DSM LL+ L + S K + +A ++D + Sbjct: 51 QMIREGDRILLGLSGGKDSMALLVILKHLQR-HSPVKFELAACTID----PEIPGFDPSP 105 Query: 73 VSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + + + + V + + + + ++ A Sbjct: 106 LKEWVASMEVPYFYESEDLVALADAHMKGDSFCSFCARHKRGKLYTVCRREGYNVLALAQ 165 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E++ M + + M + + + ++ I RP +R R R+F + Sbjct: 166 HLDDLAESLLMSAFNAGELRTMKAHYLNN----EKDIRIIRPLVRVRESQTRAFSENAEL 221 Query: 187 SWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 D N + ER R++ + + + H +L ++ ++ V + Sbjct: 222 PIIPD--NCPACYSKPQERQRMKELLLEQEKHNKHLYANLWRAMQPLVAD 269 >gi|311258078|ref|XP_003127439.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Sus scrofa] Length = 304 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 20/205 (9%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 + SGG DS L L + I ++VD + + V +R + Sbjct: 11 LGASGGKDSTVLAHVLRELAPRLG---ISLRLVAVDEGIGGYRDAALAAVRRQAARWELP 67 Query: 84 HSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIMTAHT 127 +VV++ + + A AR R + E A+ + AT ++T H Sbjct: 68 LTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLVGATHVVTGHN 127 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD ETV M R A + G+ L RP ++++ + R + Sbjct: 128 ADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEVVLYAHFRRLD 186 Query: 188 WCEDPSNTDDRFERVRVRRFVRDID 212 + + R R ++ ++ Sbjct: 187 YFSEECVYAPEAFRGHARDLLKQLE 211 >gi|297568331|ref|YP_003689675.1| PP-loop domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924246|gb|ADH85056.1| PP-loop domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 291 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 38/252 (15%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-------------- 61 L +++AVSGG DS+ L L + ++ + + +D Sbjct: 44 LADGDRVMIAVSGGIDSLVLCRLL-DLWRRKAPIHYELLPVHLDMGFAGYRPRPGLYGGG 102 Query: 62 -LRETAKDEVR------------YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAA 102 L A V + +L + + + ++ Sbjct: 103 PLPPEAGALQADGLLPPLPGTGAAVQEQLEKLGLPYLIEETTYGPEALAAEEGKNGCYHC 162 Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R + A+ N + H +D +ET ++ + + + L+ Sbjct: 163 SSRRRNRLFALAREHNCNKLALGHHQEDIIETFFLNLLYGGNIS----TMIPNQRLFAGR 218 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 L + RP +E I+ ++ +P D +R VR VR + + Sbjct: 219 LHLIRPLALLSKEMIQQLGRLFAVAAVPNPCPLTDLSKRHTVRTMVRQLTADDPRITANI 278 Query: 223 FQDLRVKVNNAV 234 F L ++ + Sbjct: 279 FAALGNVRSDYL 290 >gi|146304252|ref|YP_001191568.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702502|gb|ABP95644.1| PP-loop domain protein [Metallosphaera sedula DSM 5348] Length = 318 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 23/227 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE--TAKDEVRYVSDVC 77 + VAVSGG DS LL L + F + I++D + R + + Sbjct: 49 RVAVAVSGGKDSTTLLHVLAKLSGKMGF---EVVGINIDLGIDRGTKYSSLSTEFAVKNF 105 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHT 127 +L + + VVS K T A + R ++ E A+ + A ++ T H Sbjct: 106 EKLGVEYKVVSLKEKHGFTIDEAKVKIKRPVCSTCGLVKRYVLEEAAQELGADVLATGHN 165 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNI 186 +D ++ L+ + + + +P ++ ++ L I Sbjct: 166 LNDMA---VFVLSGYHSGDLSNLARLRAVSPAENGYIRKIKPLFLVSEKETTTYALINGI 222 Query: 187 SWCEDPSNTDDRF---ERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + D + R ++RR + + + ++ ++ K+ Sbjct: 223 PFIMDSCPNNPRVGGPTSDKLRRIIENAEDEIPGFMLRLVENFETKI 269 >gi|324512165|gb|ADY45046.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum] Length = 234 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 18/178 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L+++ +G ++ +S+D ++ D ++ V Sbjct: 47 RGEKVAIGASGGKDSTVLAYLLNTLNKRYDYG-VELLLLSIDEGIQGYRDDSLKAVERNR 105 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +S+K+ R + A + A ++T H Sbjct: 106 LQYGLPLTTLSYKDLYGWTMDEIVAKIGTKNNCTFCGVFRRQALDRGALMLGANKLVTGH 165 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182 DD ETV M R + C TI+ + + R P +DI + Sbjct: 166 NADDMAETVLMNLLRGDIAR----LQRCATIVTGSDDCLPRAKPLKYTLEKDIVMYAH 219 >gi|261343943|ref|ZP_05971588.1| PP-loop family protein [Providencia rustigianii DSM 4541] gi|282568332|gb|EFB73867.1| PP-loop family protein [Providencia rustigianii DSM 4541] Length = 304 Score = 96.9 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L S+ A+++D + ++ Sbjct: 34 GDRIMVCLSGGKDSYTLLAILQSLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPAYL 88 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K P+ + R ++ A + AT I H DD Sbjct: 89 DELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKGFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F + V++ + Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSATQNVVSSHLCDTTLFDFKNISH 262 Query: 248 SIIAISQDILNIDSTLL 264 I+ + D L Sbjct: 263 GDAVINGGDMAFDREEL 279 >gi|255539134|ref|XP_002510632.1| cancer-associatedprotein protein, putative [Ricinus communis] gi|223551333|gb|EEF52819.1| cancer-associatedprotein protein, putative [Ricinus communis] Length = 361 Score = 96.9 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 20/215 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L + + R + +SVD + D + V Sbjct: 56 HLFKPGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS+K+ R + A + + Sbjct: 115 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKV 174 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR---- 178 T H DD ETV + R + T D + +PF ++I Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFKYTYEKEINLNQI 232 Query: 179 -SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++ + + + R R F++D++ Sbjct: 233 FTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 267 >gi|291224155|ref|XP_002732071.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Saccoglossus kowalevskii] Length = 353 Score = 96.9 bits (240), Expect = 6e-18, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 18/204 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L L +L+D+ +K +SVD + D + V + Sbjct: 52 VAIGASGGKDSTVLAYVLK-LLNDKYDYGLKLILLSVDEGITGYRDDSLTTVKRNQKQYD 110 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A + A I+T H DD Sbjct: 111 LPLKIVSYEELYGWTMDAIVKEIGLKNNCTFCGVFRRQALDRGAVLVEADKIVTGHNADD 170 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188 ETV M R + C +I ++ R P ++I + + + + Sbjct: 171 IAETVLMNVLRGDIARLR----RCTSITTGNEGYLPRCKPLKYTYEKEIVMYAYFKKLDY 226 Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 227 FSTECIYSPNAYRGYARAFLKDLE 250 >gi|290769934|gb|ADD61703.1| putative protein [uncultured organism] Length = 393 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D E + + + Sbjct: 147 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYNEANRAVIEHN 205 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + L I +V + + R + AK + I H +D Sbjct: 206 AKL---LGIPITVFETEIFDAVYNVEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYD 262 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + ++ + + RP R DI+ + ++ + Sbjct: 263 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMQLIRPMYLIREADIKHWRDYNDLHFI 319 >gi|212704444|ref|ZP_03312572.1| hypothetical protein DESPIG_02500 [Desulfovibrio piger ATCC 29098] gi|212672165|gb|EEB32648.1| hypothetical protein DESPIG_02500 [Desulfovibrio piger ATCC 29098] Length = 253 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 20/184 (10%) Query: 16 LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72 +++P I VAVSGG DS LL LH + + + AI ++ + + Sbjct: 25 MIWPGCRIGVAVSGGVDSFVLLKTLH-IRQGIVPFRFEIMAIHLNPGFDPQS-----HMP 78 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTA 125 ++ S+ I + R R + E T + Sbjct: 79 LAAWLSQHGIPSHLEVTDFGPHAHSAENQRRSPCFRCAWLRRKRLFELCSQYRLTHLALG 138 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D + T +M R+ GM + + + L + RP L ++ I Q Sbjct: 139 HNAEDLVSTFFMNLCRNGRVDGMSM----NEPFFGGKLHLIRPLLLVEKKYIIKAAKQWE 194 Query: 186 ISWC 189 + Sbjct: 195 LPLW 198 >gi|226711464|sp|A5DPQ4|CTU1_PICGU RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|190348662|gb|EDK41157.2| hypothetical protein PGUG_05255 [Meyerozyma guilliermondii ATCC 6260] Length = 369 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 18/212 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++G + +S+D + D + V Sbjct: 52 QLFKPGDKVAIGASGGKDSTVLASVLKTLNEKYNYG-LTLVLLSIDEGIVGYRDDSLATV 110 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+K+ R + A + + Sbjct: 111 KRNQIQYEMPLEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLEIDHV 170 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180 +T H DD ETV M R + L C + I R PF +++I + Sbjct: 171 VTGHNADDMAETVLMNLLRGDIAR---LERSCSILTSSEGSPIKRSKPFKYTYQKEIVLY 227 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R ++ ++ Sbjct: 228 AHYKKLDYFSTECSYAPEAFRGTARELLKALE 259 >gi|237841839|ref|XP_002370217.1| aminotransferase class V domain-containing protein, conserved [Toxoplasma gondii ME49] gi|211967881|gb|EEB03077.1| aminotransferase class V domain-containing protein, conserved [Toxoplasma gondii ME49] gi|221482684|gb|EEE21022.1| PP-loop domain-containing protein, putative [Toxoplasma gondii GT1] gi|221503122|gb|EEE28828.1| PP-loop domain-containing protein, putative [Toxoplasma gondii VEG] Length = 1513 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 25/242 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++R F + +LV VSGG DS+ LL L + R+ +A +VD Sbjct: 1155 EAIRSF-DMIRDGDRLLVGVSGGKDSLTLLHVLRDLRR-RAPIHFSLAAATVD------- 1205 Query: 67 KDEVRYV----SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKT 116 + L I + + K + + A + L+ + Sbjct: 1206 PVTPEFCPQPLIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMRK 1265 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +++ DD E+ M + + M + D +L I RP + R ++ Sbjct: 1266 HGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTREKE 1321 Query: 177 IRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 F + + D ER R++ + + ++ +L + L + + Sbjct: 1322 TAEFAARHRLPVIADNCPACFAAPKERHRMKMLLSEQEMEFPHLFQNLLKSLTPLLAISA 1381 Query: 235 AM 236 A Sbjct: 1382 AE 1383 >gi|147674407|ref|YP_001216989.1| hypothetical protein VC0395_A1043 [Vibrio cholerae O395] gi|262169273|ref|ZP_06036965.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27] gi|205830637|sp|A5F888|TTCA_VIBC3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|146316290|gb|ABQ20829.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013348|gb|ACP09558.1| conserved hypothetical protein [Vibrio cholerae O395] gi|262022086|gb|EEY40795.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27] Length = 310 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 DSLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|95007143|emb|CAJ20364.1| hypothetical protein, conserved [Toxoplasma gondii RH] Length = 1443 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 25/242 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++R F + +LV VSGG DS+ LL L + R+ +A +VD Sbjct: 1085 EAIRSF-DMIRDGDRLLVGVSGGKDSLTLLHVLRDLRR-RAPIHFSLAAATVD------- 1135 Query: 67 KDEVRYV----SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKT 116 + L I + + K + + A + L+ + Sbjct: 1136 PVTPEFCPQPLIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMRK 1195 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +++ DD E+ M + + M + D +L I RP + R ++ Sbjct: 1196 HGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTREKE 1251 Query: 177 IRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 F + + D ER R++ + + ++ +L + L + + Sbjct: 1252 TAEFAARHRLPVIADNCPACFAAPKERHRMKMLLSEQEMEFPHLFQNLLKSLTPLLAISA 1311 Query: 235 AM 236 A Sbjct: 1312 AE 1313 >gi|260815136|ref|XP_002602330.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae] gi|229287638|gb|EEN58342.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae] Length = 471 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 27/213 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L + +L++R + +SVD + D + V + Sbjct: 52 VAIAASGGKDSTVLAHLMK-LLNERHDYGLTLFLLSVDEGITGYRDDSLETVKRNQQQYE 110 Query: 82 IAHSVVSWKNSKPQT--------------------GLMAAAREARYALISEHAKTINATL 121 + VVS+K + R + A + Sbjct: 111 LPLKVVSYKILSTHSEKQELYGWTMDEIVRQIGLKNNCTFCGVFRRQALYRGAMMLGVDK 170 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179 I+T H DD ETV M R + C I+ + I R PF ++I Sbjct: 171 IVTGHNADDVAETVIMNVLRGDIAR----LQRCTAIVTGTDGAIPRCKPFKYTYEKEIVM 226 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R +++D++ Sbjct: 227 YAYFKKLDYFSTECIYSPNAYRGHARTYLKDLE 259 >gi|317404582|gb|EFV84987.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Achromobacter xylosoxidans C54] Length = 338 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 18/222 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75 ++V +SGG DS +L L + F + A+++D + ++ RY+++ Sbjct: 62 SGDRVMVCLSGGKDSYAMLDILLQLQKRAPFP-FELVAVNLD-QKQPGFPADILPRYLTE 119 Query: 76 VCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + I +S+V+ + +T + + R ++ A + AT I H DD Sbjct: 120 LGVKFHIETQDTYSIVTRVLEEGKT-MCSLCSRLRRGILYRVASELGATKIALGHHRDDI 178 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T ++ KGM + D + RP D+ ++ + Sbjct: 179 LGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPETDLIAYAELKQFPII-- 232 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R +++ D F L V Sbjct: 233 PCNLCGSQENLKRKEVGRMIKEWDRQHPGRSWNVFNALSRVV 274 >gi|260768432|ref|ZP_05877366.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP 102972] gi|260616462|gb|EEX41647.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP 102972] gi|315180143|gb|ADT87057.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Vibrio furnissii NCTC 11218] Length = 310 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 24/258 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ A+++D + ++ + Sbjct: 40 GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FSLIAVNLD-QKQPG---FPEHILPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + +V + R ++ AK + AT I H DD Sbjct: 95 ASLGVEYKIVEEDTYSIVQDKVPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 IIETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R +++ + D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNMQRQNIKQMLNAWDKQFPGRIESMFRAMQNVVPSHLADFELFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLL 264 R I+ + D + Sbjct: 268 RDSGVINGGDIGFDKEEM 285 >gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4] gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4] Length = 307 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 66/199 (33%), Gaps = 22/199 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I R L A ++VA+SGG DS+ L + + VD Sbjct: 30 FLRQISRTIKKYRMLPPGARVVVALSGGKDSLVTAFVLKRL-------GYEVLGFFVDLG 82 Query: 62 LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117 + E + D R V D C I V S K +T A R+ R + K Sbjct: 83 IEENNFSLDSRRAVEDFCREKEIPLEVFSLKEKFGKTIPEVARRQERICALCGVTKRHLM 142 Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169 NA + T HT DD ++ R D GL + + +P Sbjct: 143 NEYALAVNAYALATGHTLDDMAASLLANLTRWDLHYLAKGLPVLPPEPGFARK---IKPL 199 Query: 170 LRCRREDIRSFLLQRNISW 188 ++I +F I Sbjct: 200 ALQGEKEILAFAELHGIKP 218 >gi|327484092|gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae LMA3894-4] Length = 365 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + ++ A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|229529498|ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] gi|229333272|gb|EEN98758.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae 12129(1)] Length = 310 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + ++ A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDSTLLF 265 ++ I+ + D + Sbjct: 268 KNSGVINGGDIGFDKEEIA 286 >gi|159041820|ref|YP_001541072.1| PP-loop domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920655|gb|ABW02082.1| PP-loop domain protein [Caldivirga maquilingensis IC-167] Length = 337 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 27/203 (13%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCL---- 62 +VR F R + + +AVSGG DS+ L+ L + K A S+D Sbjct: 40 TVRRF-RLITSGDRVGIAVSGGKDSLVLMYLLGKLRRLGRIPKDTVLIAFSIDEGQPYSC 98 Query: 63 --RETAKDEVRYVSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAAREA 105 R + + YV+ + I + V + T + Sbjct: 99 VRRANS---MDYVAKLTEEFNIEYKVFRFSELFGVTAFDIAQGLWGKGVNTHMCTICGVM 155 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLW 164 R ++ + +N T I T H DD+ +TV + + ++ + + + Sbjct: 156 RRRAMNIVGRMLNLTKIATGHNLDDEAQTVLLNVTGNDVKRFAWFGATPSNDVAEEEFIP 215 Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187 +P R E++ + I Sbjct: 216 RIKPLRFIREEEVALYAYYHGIP 238 >gi|303325586|ref|ZP_07356029.1| putative tRNA s2C32 biosynthesis protein [Desulfovibrio sp. 3_1_syn3] gi|302863502|gb|EFL86433.1| putative tRNA s2C32 biosynthesis protein [Desulfovibrio sp. 3_1_syn3] Length = 259 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 15/181 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + VAVSGG DS LL L + + + A+ ++ + + Sbjct: 27 LWPGCRVGVAVSGGVDSFVLLKTLK-IRQGIVPFRFELMAVHLNPGFDPHSH---AALLP 82 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTF 128 +R I + R A R + E T + H Sbjct: 83 WLAREGIPAHLEVTDYGPQAHSEQNLRRSACFRCAWLRRKRLFELCARYGLTHLALGHNA 142 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET ++ R+ GM + ++ L + RP L ++ I Q + Sbjct: 143 EDLVETFFLNLCRNGRVDGMSMC----EPFFNGGLRLIRPLLLVEKKYILKAARQWELPV 198 Query: 189 C 189 Sbjct: 199 W 199 >gi|313127354|ref|YP_004037624.1| hypothetical protein Hbor_26270 [Halogeometricum borinquense DSM 11551] gi|312293719|gb|ADQ68179.1| conserved hypothetical protein TIGR00269 [Halogeometricum borinquense DSM 11551] Length = 322 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 19/218 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L L +I+ A+++ + + V ++ Sbjct: 53 PERWVIGLSGGKDSVVLTHILDETFGK--DPRIEMMALTIHEGIEGYRDESVEACVELSD 110 Query: 79 RLRIAHSVVSW------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L++ H +V++ + A R L+ +A+ +A ++T H Sbjct: 111 DLQMRHELVTYEEEFGVQMDDVAREDPENMAPCAYCGVFRRDLLESYAEEFSADKLLTGH 170 Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 DD+ ET M L + D + ++P +++ + Sbjct: 171 NLDDEAETALMNILEGDVKQMAKHFDASLGPFDERNPSDDFVPRAKPLRDIPEKEVALYA 230 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +++ R ++ + D++ + Sbjct: 231 HLKDLPAHITECPHASEAFRGEIQELMLDLEDDHPGTR 268 >gi|284166087|ref|YP_003404366.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511] gi|284015742|gb|ADB61693.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511] Length = 319 Score = 96.5 bits (239), Expect = 7e-18, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 19/219 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P ++ +SGG DS+ L LH ++ +I+ +++ + V ++ Sbjct: 52 APQTWVIGLSGGKDSVVLTQILHDTFAE--DPRIELVGLTIHEGIEGYRDKSVDACVELA 109 Query: 78 SRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 L I H +VS ++ A R L+ ++A+ + A L++T Sbjct: 110 DDLDIRHELVSYEEEFGVRMDDVVEDDPENMAACAYCGVFRRDLLEKYAEKLEADLLLTG 169 Query: 126 HTFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 H DD+ +T M L + + + ++P +++ + Sbjct: 170 HNLDDEAQTALMNFLEGDVEQIAKHFDASLGALSEREDQAEFVPRAKPLRDVPEKEVALY 229 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 ++ R +++ + ++ + + Sbjct: 230 AHINDLPAHITECPHASEAYRGEIQQLLYGLEENHPGTR 268 >gi|332019893|gb|EGI60354.1| Cytoplasmic tRNA 2-thiolation protein 1 [Acromyrmex echinatior] Length = 339 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P + + SGG DS L L ++ ++R ++ +S+D + D ++ V Sbjct: 47 KLFKPGDKVAIGASGGKDSTVLAYVLKTL-NERYKYELDLFLLSIDEGITGYRDDSLKTV 105 Query: 74 SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + I ++S+K + R + A + I Sbjct: 106 TRNKDDYGIPLKILSYKELYGWTMDSIVAEIGRKNNCTFCGVFRRQALDRGAAILKVDCI 165 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181 T H DD ETV M R + L I + + +P ++I + Sbjct: 166 ATGHNADDIAETVLMNILRGDIAR---LQRCTSVITTGADSIMRCKPLKYAYEKEIVMYA 222 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPK 240 +N+ + R R F++D++ + +++V V M + Sbjct: 223 YFKNLVYFSTECIYAPNAYRGHARAFLKDLEKIRPSSIIDIIHSGEQLQVKANVKMPERR 282 Query: 241 YLTV 244 T+ Sbjct: 283 NCTL 286 >gi|196011850|ref|XP_002115788.1| hypothetical protein TRIADDRAFT_59846 [Trichoplax adhaerens] gi|190581564|gb|EDV21640.1| hypothetical protein TRIADDRAFT_59846 [Trichoplax adhaerens] Length = 882 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 22/239 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLR 63 IE+V+ F + ILV +SGG DS+ LL L + A ++D Sbjct: 636 IEAVQDF-NMIAQNDKILVCISGGKDSLSLLHTLKQYQFYARAKGIHFDIGATTID---P 691 Query: 64 ETAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +++ R + + L + + + + N + + + I A+ Sbjct: 692 QSSGYNPRPLIKYMAELGVPYFYEEQDIITAASNVDRCDSICSFCSRLKRGRIYACARRE 751 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 +I DD E+ M + + + + + +L + RPF+ R +++ Sbjct: 752 GYNVIALGQHLDDLSESFLMSIFHNGFLR----TMKACYTVREKDLRVIRPFVYVREQEL 807 Query: 178 RSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 + F Q + P N F ER RV++ + + ++ L ++ ++ Sbjct: 808 KIFAEQAKLPVI--PENCPACFEAPKERRRVKQLLANQEVLFPMLHQSLLSSMKPLMSR 864 >gi|253744294|gb|EET00518.1| ATPase of the PP-loop superfamily implicated in cell cycle control, putative [Giardia intestinalis ATCC 50581] Length = 349 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 47/254 (18%) Query: 2 FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAI 56 F E V+ V SLV P I + VSGG DS +L +H++ + ++F+ + Sbjct: 28 FREVEEEVQRTVEKHSLVRPGESIALGVSGGKDSSVMLHIMHNLRLRYRAFYDGVRFAMV 87 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------------------ 92 +V+ ++ + + + + + +V ++ Sbjct: 88 AVNEGIQGYRDESLACLQRLHKKYPYELKIVDFEERYGRTLDQIVNTANGDSSIHESVPL 147 Query: 93 --------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 T + R +S + + T + T H DD ETV + Sbjct: 148 KVDLEDDTGRPQPTAKTTTACSFCGILRRNSLSHGSLQTHCTKVATGHNADDNAETVLLN 207 Query: 139 SQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 R A K L + + D + +P + DI + + + + Sbjct: 208 LIRGDAAK---LVRCSEPLSDLDQGVARIKPLCHISQRDIVMYAYLQRLDFFSVECPYAT 264 Query: 198 RFERVRVRRFVRDI 211 R + R F+ + Sbjct: 265 TALRGKPRSFLTSL 278 >gi|212712036|ref|ZP_03320164.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM 30120] gi|212685558|gb|EEB45086.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM 30120] Length = 304 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ A+++D + ++ Sbjct: 34 GDRIMVCLSGGKDSYTLLSILQNLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPAYL 88 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K P+ + R ++ A I AT I H DD Sbjct: 89 EELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATEIGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI + + Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYAKAKAFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F + V++ + Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSATQNVVSSHLCDTELFDFKNISH 262 Query: 248 SIIAISQDILNIDSTLL 264 I+ + D L Sbjct: 263 GDAVINGGDMAFDREEL 279 >gi|281356639|ref|ZP_06243130.1| PP-loop domain protein [Victivallis vadensis ATCC BAA-548] gi|281316766|gb|EFB00789.1| PP-loop domain protein [Victivallis vadensis ATCC BAA-548] Length = 250 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 33/242 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY- 72 + + ILV +SGG DS LL ALH++ ++ + A + D + Sbjct: 20 KMIAAGDRILVGLSGGKDSFALLHALHALRR-KAPVEFGLIAATFDPGF-------PEFN 71 Query: 73 ---VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 ++ C R+ H +V+ + K R + A+ + + Sbjct: 72 LPGIAGYCRRMGWEHRMVALPVAEILEEKKFTATPCVLCSRLRRGKLYGLARELGCNKLA 131 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 FDD + M R MG + + + + I RPF I+S L Q Sbjct: 132 LGQHFDDIAASFLMSLCRGQGLTTMGPNVPAKS---EPGVRIIRPFALAPESLIKSCLTQ 188 Query: 184 RNISW---CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 ++ C + +R R V ++ ++ +LR ++ ++ L P+ Sbjct: 189 WDLPAAGKCRYET-ELKAGDRAFFRNLVDEL--------AERIPNLRSQMARSLGNLQPE 239 Query: 241 YL 242 YL Sbjct: 240 YL 241 >gi|320528344|ref|ZP_08029506.1| PP-loop family protein [Solobacterium moorei F0204] gi|320131258|gb|EFW23826.1| PP-loop family protein [Solobacterium moorei F0204] Length = 255 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 19/228 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + I V VSGG DS+ LL AL S + I ++ + + Sbjct: 20 IQNGDRICVGVSGGKDSILLLYALSIYQKAAKRISGKEFSVIGIHLEMGF---SDMDFTE 76 Query: 73 VSDVCSRLRIAHS--------VVSWKNSKPQTGLM-AAAREARYALISEHAKTINATLIM 123 V + I + ++ SK + + + I + A+ N I Sbjct: 77 VRKFMKKHNIEYIDYPTKLYDILQLHPSKKNGNIQCSLCSTLKKGAIVKAAQEYNCNKIA 136 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 AH DD +ET++M G + L + + RPF+ ++I++ + Sbjct: 137 FAHHADDAIETLFMNMIYG----GRISTFTPAMYLKNTGMGFIRPFVYVYEDEIKNTVRH 192 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 + + D +R + + +I + K L + Sbjct: 193 EQLPVVKSTCPNDGFTKRQDTKELLANIYQTYPFAKKNFLTSLSNQEQ 240 >gi|219125192|ref|XP_002182870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405664|gb|EEC45606.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 252 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 15/179 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L HI++ VSGG DS LL + + + +A+ VD ++ + Sbjct: 22 LEEGDHIMICVSGGKDSATLLSLVKQLQRQLPI-QFNVTAVHVD---QKQPGYNGASLIA 77 Query: 76 VCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I + VV+ ++P R ++ A T+ IM H Sbjct: 78 WLEEMMIPYLVVTEDTYSVVVDKTEPGKSFCTVCSRLRRGILYSTALTLGCNKIMLGHHA 137 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD LET+ + K M +L + RP ++ DI + N Sbjct: 138 DDCLETLLLNMIHTGQTKAM----PARYTSQRGSLAVMRPLIQSMETDIAEYAHLSNFP 192 >gi|14290537|gb|AAH09037.1| ATP binding domain 3 [Homo sapiens] Length = 348 Score = 96.5 bits (239), Expect = 8e-18, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVRRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAVRWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT I+T H DD ETV M R A + G+ L RP ++++ Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + R + + + R R ++ ++ Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256 >gi|134045270|ref|YP_001096756.1| PP-loop domain-containing protein [Methanococcus maripaludis C5] gi|132662895|gb|ABO34541.1| PP-loop domain protein [Methanococcus maripaludis C5] Length = 324 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 33/204 (16%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRE--TAKDEVRY 72 ILV +SGG DS+ LL L R ++ A++VD +R + V+ Sbjct: 74 PKDKILVGLSGGKDSLALLHLL---EPYRRKYGVQIYAVTVDLNINGIRPWTESNKNVKM 130 Query: 73 VSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKTI-- 117 +S+ C L I H +++ S+ G+ + R +++ +AK Sbjct: 131 ISEHCKNLNIPHEIIAHDGNVVEMSKILSENTKGIEYSPCFSCSMVRRHVLTNYAKNNFE 190 Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------LNLWISR 167 + I HT +D +T+ + K + + D + + R Sbjct: 191 SDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKNFNKTDVDFKDFKLNLKSCCMIR 250 Query: 168 PFLRCRREDIRSFLLQRNISWCED 191 P L E I L++ +I + +D Sbjct: 251 PMLNVSEEKIVKALVECDIEYYKD 274 >gi|297526412|ref|YP_003668436.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] gi|297255328|gb|ADI31537.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710] Length = 323 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 23/231 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+ +SGG DS+ L L + R K ++ + E ++ + Sbjct: 47 KGDRVLLGLSGGKDSVVLAHILSKL---RESIGFKLYLAHINLGIGEYSEKNAEVAKKIS 103 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAA---RE---------ARYALISEHAKTINATLIMTA 125 + ++ + G+ A R RY L++ A + A I T Sbjct: 104 EKTNAPLIILDLR-KILGVGIPELALKTRRPPCSVCGVVKRY-LLNALAVELKANSIATG 161 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQ 183 H DD T ++ + + + I + + +P EDI+ + Sbjct: 162 HNLDDMA-TFILKEFLVQNLE--QIPKLAPRIEGVKDYLVAKIKPLYETYEEDIKKYAEL 218 Query: 184 RNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 NI + E+ D +++ +RD++ L + + L + Sbjct: 219 NNILYVEEKCPLADETTLTWHLKKHLRDLEYRFPGLTIGFIRRLVKNIEKY 269 >gi|300711905|ref|YP_003737719.1| PP-loop domain protein [Halalkalicoccus jeotgali B3] gi|299125588|gb|ADJ15927.1| PP-loop domain protein [Halalkalicoccus jeotgali B3] Length = 333 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 79/231 (34%), Gaps = 32/231 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS+ L LH + +++ +++ + + ++ Sbjct: 53 PETWVIGLSGGKDSVVLTHVLHETFAQ--DPRVEIVGLTIHEGIEGYRDKSLDACVELAD 110 Query: 79 RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I H VVS ++ A R ++S +A+ ++A ++T H Sbjct: 111 EIGIRHEVVSYAEEFGVRMDDVVEDDPENMAACAYCGVFRRDVLSRYAERLDADKLLTGH 170 Query: 127 TFDDQLETVYMRSQR---------------DYAEKGMGLSGMCDTILYDLNLWISR---P 168 DD+ +T M + ++ G +G + + P Sbjct: 171 NLDDEAQTALMNFLEGDVAQIAKHFDASLGGFGDETGGSNGRNNDGTRAESDEFVPRAKP 230 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +++ + +++ R ++R + D++ + + Sbjct: 231 LRDVPEKEVALYAHLKDLPAHITECPHSSEAYRGEIQRLLYDLEENHPGTR 281 >gi|288942777|ref|YP_003445017.1| PP-loop domain-containing protein [Allochromatium vinosum DSM 180] gi|288898149|gb|ADC63985.1| PP-loop domain protein [Allochromatium vinosum DSM 180] Length = 264 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVR 71 R + IL+ VSGG DS+ LL L + + + + + ++VD + + Sbjct: 26 FRMIGEGDRILLGVSGGKDSLSLLQILAHL-RTYAPVRFELAVLTVD----PEVPGYDPQ 80 Query: 72 YVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + D RL + + K A + ++ + ++ Sbjct: 81 RLKDYYDRLGLTWHYEQQPLMEQAKTHMDGDSFCAYCSRMKRGIMYRLCREHGYNVLALG 140 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E++ M + + D ++ I RP + CR F + Sbjct: 141 QHLDDLAESLLMSLFHGGQLR----TMKAHYRNQDGDVRIIRPLVYCRERQTADFARRAG 196 Query: 186 ISWCEDPSNT 195 + D Sbjct: 197 LPVIPDSCPA 206 >gi|291549805|emb|CBL26067.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus torques L2-14] Length = 388 Score = 96.1 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 22/228 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D + + Sbjct: 136 ELVKPGDRIAVCISGGKDSMLMAKLFQELKRHNKF-DFEVKFLVMDPGYSPANRQVIE-- 192 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + RL I + + R + HA+ + I H +D Sbjct: 193 -ENARRLEIPIEIFESDIFESVYNIEKSPCYLCARMRRGYLYSHAQKMGCNKIALGHHYD 251 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + ++ + + RP R +DI+++ ++ + Sbjct: 252 DVIETILMGMLYSAQVQTM--MPKLHSTNFE-GMELIRPLYMVREDDIKAWRDYNDLHFI 308 Query: 190 EDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N ++R +R+ ++ + + Y++ F+ + Sbjct: 309 QCACKFTDTCTTCNNEENRSKRMEIKELIATLKKVNPYVEGNIFKSVE 356 >gi|126178433|ref|YP_001046398.1| PP-loop domain-containing protein [Methanoculleus marisnigri JR1] gi|125861227|gb|ABN56416.1| PP-loop domain protein [Methanoculleus marisnigri JR1] Length = 343 Score = 96.1 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 20/182 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + + VA+SGG DS +L LH +L +R ++ AI+VD + + Sbjct: 42 RWIESGDTVAVALSGGKDSSAVLFFLHRLLGERR--DVRLMAITVDEGISGY--RDPNQA 97 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLI 122 + + + ++ + T AR+ R AL++ A+ + T Sbjct: 98 RKIAESMGVPWVTATFADEYRITLDEIVARKGTGLSCSYCGVLRRALMNRIAREHDVTKF 157 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 DD+ ++V M + R AE+ + ++ +PF+ ++ + Sbjct: 158 AYGFNLDDEAQSVLMNALRGDAERLTRPMREAEGMVPR-----IKPFMYIPEREVALYAF 212 Query: 183 QR 184 Sbjct: 213 LH 214 >gi|254670214|emb|CBA05375.1| cell cycle protein [Neisseria meningitidis alpha153] Length = 331 Score = 96.1 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 6/187 (3%) Query: 141 RDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199 R A L +C + I RP L R+DI + + + ED SN+D + Sbjct: 28 RSRAAAVCALWRLCPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAY 87 Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDI 256 R R R + + + + + +A+L + + + Sbjct: 88 LRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARW 147 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316 L ++LR + I +P ++ + L K G ++ + A L Sbjct: 148 LTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHHYAGRL 205 Query: 317 WITRAVR 323 ++ R + Sbjct: 206 FVFRPEK 212 >gi|197285222|ref|YP_002151094.1| C32 tRNA thiolase [Proteus mirabilis HI4320] gi|227355648|ref|ZP_03840042.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906] gi|194682709|emb|CAR42884.1| conserved hypothetical protein [Proteus mirabilis HI4320] gi|227164255|gb|EEI49148.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906] Length = 306 Score = 96.1 bits (238), Expect = 9e-18, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 22/254 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ + A+++D + ++ + Sbjct: 34 GDKIMVCLSGGKDSYTLLSILMNLQKSAPI-QFSLIAVNLD-QKQPG---FPEHILPEYL 88 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V + R ++ A + AT I H DD Sbjct: 89 EQLGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATEVGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ KGM M D D + RP R +DI F +N Sbjct: 149 ILETLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYAREKDIERFAQAKNFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F+ + V + + + Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTQLFDFANIKQ 262 Query: 248 SIIAISQDILNIDS 261 I+ L D Sbjct: 263 GDEIINGGDLAFDK 276 >gi|307594196|ref|YP_003900513.1| PP-loop domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549397|gb|ADN49462.1| PP-loop domain protein [Vulcanisaeta distributa DSM 14429] Length = 338 Score = 96.1 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 25/210 (11%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAI 56 +F S ++V +R + I +A+SGG DS+ L+ L + ++ A Sbjct: 30 LFRSIEDTVLRTIRKYRLISDDDRIGIAISGGKDSLTLMYLLGKFRRQGKIPRNVELIAF 89 Query: 57 SVDHCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTG 97 S++ + V YV + I + V ++K Sbjct: 90 SINEG-HPYSCFYRMARVDYVQKLSEEFNIPYRVYTFKELFGVTATDIAHGLWSKGINVH 148 Query: 98 LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157 + R ++ + + T I T H DD+ +TV + + ++ G I Sbjct: 149 MCTIDGVLRRRAMNIIGRQLGLTKIATGHNLDDESQTVLLNVLSNDLDRFAWF-GPRPEI 207 Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 + + +P R E+I + I Sbjct: 208 DREGFIPRIKPLRFVREEEIALYAYYHGIP 237 >gi|227888869|ref|ZP_04006674.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] gi|227850562|gb|EEJ60648.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] Length = 118 Score = 96.1 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + L+A SGG DS+ LL L + L + S + +DHCLR+ + E + + + Sbjct: 15 IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71 Query: 77 CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLI 122 S L++ W PQ G+ A ARE RYA ++E + + Sbjct: 72 TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYKTDYL 118 >gi|209875951|ref|XP_002139418.1| PP-loop family protein [Cryptosporidium muris RN66] gi|209555024|gb|EEA05069.1| PP-loop family protein [Cryptosporidium muris RN66] Length = 348 Score = 96.1 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 36/243 (14%) Query: 2 FLSPIES-VRFFVRS--LVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 FLS E V ++ S + P ++ + +SGG DS LL ++ + + R + ++ Sbjct: 29 FLSAFEEEVHEYITSYKMFSPGEVVAIGISGGKDSSVLLNVMYEL-NKRKEYGLDLRLVA 87 Query: 58 VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAR 103 +D + R+ A V + D + +++ +++ ++ Sbjct: 88 IDEGIKGYRDDALKVVNFQKDY---YDLPLTILQFQDLFGTTMDDIRLKAGKSNSCTFCG 144 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK---------GMGLSGMC 154 R + A + T H DD ETV + R + + Sbjct: 145 VFRRRSLDVGGNLSGADKLCTGHNADDAAETVLLNILRGDLNRLQRCTNPITSTEIKQSQ 204 Query: 155 DTILYDLNLWI-----SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209 D + + +P + C ++I + N+ + R R F+R Sbjct: 205 DNEVVMGLGTLRSIPRVKPLMYCFEKEIVLYAYYSNLRYFSTECKYSVDAYRGFAREFIR 264 Query: 210 DID 212 I+ Sbjct: 265 QIE 267 >gi|239907020|ref|YP_002953761.1| hypothetical protein DMR_23840 [Desulfovibrio magneticus RS-1] gi|239796886|dbj|BAH75875.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 266 Score = 96.1 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 61/188 (32%), Gaps = 19/188 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72 L A + +AVSGG DS+ +L + + ++ + ++ + Sbjct: 33 QLAPRARVGLAVSGGVDSLVMLAVMA-IRRRIVPFPVELILLHLNPGFDPE-----NHSP 86 Query: 73 VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++++C+ L + + ++ + R + + N + + Sbjct: 87 LAELCADLGVPAHIEVTDYGPRAFSEENKKNSPCFYCAWLRRKRLFDLCARYNLSHLAFG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD T ++ ++ G+ + L + RP L + I Sbjct: 147 HNADDLAATFFLNLFQNGRVDGLS----GRESFFSGRLTVIRPLLLVDKPTIIRAAKAWE 202 Query: 186 ISWCEDPS 193 + +P Sbjct: 203 LPVFSNPC 210 >gi|164661037|ref|XP_001731641.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966] gi|226711427|sp|A8PVM6|CTU1_MALGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|159105542|gb|EDP44427.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966] Length = 373 Score = 96.1 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 34/228 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + ++ ++R + +S+D + D + V Sbjct: 49 RGDRVAIGASGGKDSTVLAYVMKTL-NERYDYGLNLFLLSIDEGITGYRDDSLETVKRNQ 107 Query: 78 SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I V+ +K S + R + A ++ I+T H Sbjct: 108 EQYGIPLKVLGYKELYGWSMDDIVASIGRKNNCTFCGVFRRQALDRGAASLGVDHIVTGH 167 Query: 127 TFDDQLETVYMRSQRDYAEK----------------------GMGLSGMCDTILYDLNLW 164 DD ETV M R + G + + Sbjct: 168 NADDMAETVLMNVLRGDIARLERCTDIITKGPDGVDGDEDDDETEGCGAGRSGFGGSGIR 227 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 S+PF ++I + + + + R R F++D++ Sbjct: 228 RSKPFKYAYEKEIVMYAYFKQLDYFSTECIYSPNAYRGYARAFLKDLE 275 >gi|160894783|ref|ZP_02075558.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50] gi|156863717|gb|EDO57148.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50] Length = 385 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 86/245 (35%), Gaps = 21/245 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + + +D ET + + Sbjct: 130 ELVKPGDKIAVCISGGKDSMLMAKCFQELKLHNKF-EFEVKFLVMDPGYSETNRKVIE-- 186 Query: 74 SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L I ++ + + R + A+ + I H +D Sbjct: 187 -ENAKSLNIPITIFESDIFESVFTVEKSPCYLCARMRRGHLYHFAQELGCNKIALGHHYD 245 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + ++ + + RP R +DI+++ + + Sbjct: 246 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHFI 302 Query: 190 EDP---------SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + N ++R +RV ++ ++ + Y++ F+ + + V Sbjct: 303 QCACKFTDTCTTCNNENRSKRVEIKELIQTLKQVNPYVEGNIFKSVENVNLDTVVAWKQH 362 Query: 241 YLTVH 245 H Sbjct: 363 GEKHH 367 >gi|37679865|ref|NP_934474.1| ATPase [Vibrio vulnificus YJ016] gi|320156359|ref|YP_004188738.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus MO6-24/O] gi|81757527|sp|Q7MKU7|TTCA_VIBVY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|37198610|dbj|BAC94445.1| predicted ATPase [Vibrio vulnificus YJ016] gi|319931671|gb|ADV86535.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus MO6-24/O] Length = 310 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 24/258 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FSLVAVNLD-QKQPG---FPAHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V + R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMAGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R +++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267 Query: 247 RSIIAISQDILNIDSTLL 264 + I+ + D + Sbjct: 268 KDSGVINGGDIGFDKEEM 285 >gi|148653547|ref|YP_001280640.1| C32 tRNA thiolase [Psychrobacter sp. PRwf-1] gi|205830619|sp|A5WG99|TTCA_PSYWF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|148572631|gb|ABQ94690.1| PP-loop domain protein [Psychrobacter sp. PRwf-1] Length = 368 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 85/260 (32%), Gaps = 23/260 (8%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F +++ ++ V VSGG DS LL L + + I F ++V+ + Sbjct: 77 AIRDF--NMIEDGDVVMVCVSGGKDSYTLLDILLFL---KRIAPINFDVVAVNLDQKQPG 131 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTIN 118 +EV + + I H ++ + +A R + AK I Sbjct: 132 YPEEVLP--NYLQQQGIPHYILEKDTYSVVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 189 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L T ++ + K M + D D + RP +DI Sbjct: 190 ATKIALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNVLIRPLAYVEEKDII 245 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + + P N + R + D+ ++ + + N + Sbjct: 246 KYARYKEFPII--PCNLCGS-QENLQRAMINDMLRQWDDAHPQRLASIFKAMQNVAPSQL 302 Query: 239 PKYLTVHMRSIIAISQDILN 258 S+ D Sbjct: 303 ADRELFDFESLTLQRDDSKR 322 >gi|257053471|ref|YP_003131304.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940] gi|256692234|gb|ACV12571.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940] Length = 321 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 19/186 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P L+ +SGG DS+ L L ++ +I+ A+S+ + + + + Sbjct: 55 PVTWLIGLSGGKDSVVLTQLLAETFAE--DPRIELVALSIHEGIEGYRDESLDAAEALTD 112 Query: 79 RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L + H VS ++ A R L+S +A +A L++T H Sbjct: 113 DLDLRHETVSYAEAFGVRMDDVVEDDPENMAACAYCGVFRRDLLSRYADEYDADLLLTGH 172 Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 DD+ ET M L M + L D ++ ++P +++ + Sbjct: 173 NLDDEAETALMNFFEGDVDQMAKHFDASLGPMPERSLTDKHVPRAKPLRDVPEKEVALYA 232 Query: 182 LQRNIS 187 ++ Sbjct: 233 RLADLP 238 >gi|270291818|ref|ZP_06198033.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M143] gi|270279346|gb|EFA25188.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M143] Length = 310 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 15/194 (7%) Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 +TAH DDQ+ET+ MR R + L+G+ ++ + D + I RP L ++D Sbjct: 2 VTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIEIIRPLLYFHKKDFPP--- 55 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 I ED +N ++ + R R+R L L + + + + + ++ Sbjct: 56 ---IVHFEDQTNQENAYFRNRIRNR----YLPELEKENPRLKFALLDLGREISDYQATIT 108 Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301 + + + ++ + LL+ ++ + + +++ KS R Sbjct: 109 ELSKQIDVEDLNELFSYSQQTQGVLLQNYLNQFPELNLTKAQFAEVRQILAT-KSQYRHS 167 Query: 302 VSIGRVVIDRRANF 315 + G +I NF Sbjct: 168 LKNGYELIKEYQNF 181 >gi|291545412|emb|CBL18520.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus sp. SR1/5] Length = 382 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D E + + + Sbjct: 147 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYNEANRAVIEHN 205 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + L I +V + + R + AK + I H +D Sbjct: 206 ARL---LGIPITVFETEIFDAVYNIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYD 262 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + ++ + + RP R DI+ + ++ + Sbjct: 263 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMQLIRPMYLIREADIKHWRDYNDLHFI 319 >gi|119719832|ref|YP_920327.1| PP-loop domain-containing protein [Thermofilum pendens Hrk 5] gi|119524952|gb|ABL78324.1| PP-loop domain protein [Thermofilum pendens Hrk 5] Length = 328 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 23/239 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E+VRF+ + + + VAVSGG DS+ L + ++ ++VD + Sbjct: 33 RRFLEAVRFY-KLVERGERVAVAVSGGKDSLTTLYLFSRFAGELG---VEVFGVAVDEGI 88 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE-------------ARY 107 + ++ + + RL + V S+K T A A RE R Sbjct: 89 AGYREYKLEALRSLAGRLGVEIIVGSFKEYFGFTLDEAVKALREKGFKVKPCSVCGVLRR 148 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 +++ A+ A + T H DD+++ M + +++ E + + + + + Sbjct: 149 YVMNHAAREAGADKLATGHNLDDEVQVFVMNALKNHVEGILREGIVSERAEEGDLVPRIK 208 Query: 168 PFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 P +++ ++ L RNI + E P R +R +V +++ + K + Sbjct: 209 PLYFIPEKEVLAYTLIRNIYTPFVECP--YIVYALRHPIRHWVNEVEDSSPGFKYRVLA 265 >gi|67474924|ref|XP_653193.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56470124|gb|EAL47807.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 250 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 26/185 (14%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLR-ETAKDEV 70 I++ SGG DS L+ L ++ F + + V + L E + Sbjct: 32 APHDKIIIGFSGGKDSFLLVHVLSTLGKTSHFP-LDILVVHVTNEQVGYQLNIEDS---- 86 Query: 71 RYVSDVCSRLRIAHSVVS--------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 +C L I + +++ T + R + E+AK T I Sbjct: 87 ---KALCESLGIPFITLESEPVSRFDIEDADKNTTFCLNCGKNRRRALLEYAKEHGYTSI 143 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 H DD ET+ M G+ + + RP + I+ + Sbjct: 144 ALGHHMDDVAETLLMNQMFCGCIAGIPAQFTTEKY----GVKFIRPLIEVPVVFIQEWTK 199 Query: 183 QRNIS 187 + Sbjct: 200 YIELP 204 >gi|218191619|gb|EEC74046.1| hypothetical protein OsI_09038 [Oryza sativa Indica Group] Length = 373 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 25/220 (11%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L + + R + +SVD + D + V Sbjct: 60 NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NRRHKYCLDLFLLSVDEGITGYRDDSLETV 118 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + +VS+K+ + R + A + I Sbjct: 119 KRNEIQYGLPLKIVSYKDFYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----- 177 +T H DD ETV + R + + + T D + +PF ++I Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 236 Query: 178 -----RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R F++D++ Sbjct: 237 YAISHIMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 276 >gi|329904336|ref|ZP_08273768.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327548028|gb|EGF32764.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 315 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 19/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ +R+ + A+++D + ++ Sbjct: 53 GDKVMVCLSGGKDSYALLDILMTL-RERAPINFELIAVNLD-QKQPN---FPEHILPAYL 107 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L +A + + + + R ++ A + AT I H DD Sbjct: 108 TDLGVAFHIENQDTYSIVKRVIAEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 167 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189 LET ++ K S D + RP + D + +N Sbjct: 168 ILETFFLNMFFGGKLK----SMPPKLQSDDGKHIVIRPLAYVKEADTERYAEVKNFPIIP 223 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248 D + + +R +++ +RD D F L V ++ + + + + + Sbjct: 224 CDLCGSQENLQRKQLKNMLRDWDKKNPGRTDNIFAALSTVAPSHLMDRKLFDFAGLAVTG 283 Query: 249 IIAISQDILNIDSTLL 264 + DI D Sbjct: 284 APVVDGDIAFDDEPCA 299 >gi|206559013|ref|YP_002229773.1| C32 tRNA thiolase [Burkholderia cenocepacia J2315] gi|198035050|emb|CAR50922.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 321 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 32 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 90 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 91 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 146 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 147 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 202 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 203 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 260 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 261 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 291 >gi|312876098|ref|ZP_07736086.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797084|gb|EFR13425.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 114 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +E V+ + L +L+ SGG DSM LL + + + S + + ++ Sbjct: 1 MDFLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLN 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 H LR A D+ ++V ++C R I + Sbjct: 58 HMLRPEADDDEKFVIEICKRYNIKCITRKVDVA 90 >gi|302141685|emb|CBI18888.3| unnamed protein product [Vitis vinifera] Length = 370 Score = 95.4 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 33/226 (14%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L P I + SGG DS L L + + R + +SVD + D + V Sbjct: 56 QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + VVS+K+ R + A + + Sbjct: 115 KRNEIQYGLPLKVVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAMLKVDKL 174 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIR-- 178 T H DD ETV + R + C +I+ + I R PF ++I Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS----RCTSIITGEDGPIPRCKPFKYTYEKEIVIY 230 Query: 179 ------------SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 ++ + + + R R F++D++ Sbjct: 231 PYSFLQNLNRIYTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 276 >gi|283850711|ref|ZP_06367998.1| PP-loop domain protein [Desulfovibrio sp. FW1012B] gi|283573954|gb|EFC21927.1| PP-loop domain protein [Desulfovibrio sp. FW1012B] Length = 255 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 19/188 (10%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72 L A + +AVSGG DS+ +L + + ++ + ++ D + Sbjct: 33 QLAPRARVGLAVSGGVDSLVMLAVMA-IRRRIVPFPVELMLLHLNPGF-----DAANHEP 86 Query: 73 VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++ +C+ L + + ++ + + R + + T + Sbjct: 87 LAGLCADLGLPAHIEVTDFGPRAFSDENKKKSACFYCAWLRRKRLFDLCGQYGLTHLAFG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD T ++ ++ G+ C ++ L + RP L ++ I Sbjct: 147 HNADDLSATFFLNIFQNGRVDGLS----CRESFFEGRLTVIRPLLLVDKKTIIRAAKAWE 202 Query: 186 ISWCEDPS 193 + +P Sbjct: 203 LPVFSNPC 210 >gi|183598903|ref|ZP_02960396.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827] gi|188021111|gb|EDU59151.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827] Length = 304 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 51/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L S+ A+++D + ++ + Sbjct: 34 GDRIMVCLSGGKDSYTLLSILQSLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 88 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I + +V K P+ + R ++ A + AT I H DD Sbjct: 89 ENLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI + + Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYAQAKEFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F+ + V + + Sbjct: 204 -PCNLCGSQPNLQRQVIKDLLRDWDKRYPGRIETMFRATQNVVPSHLCDTELFDFKNVAH 262 Query: 248 SIIAISQDILNIDSTLL 264 I+ L D + Sbjct: 263 GDTVINGGDLAFDREEI 279 >gi|294934128|ref|XP_002780993.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983] gi|239891164|gb|EER12788.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983] Length = 527 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 26/193 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P +++++SGG DSM L L + F K A + H R+ A E+++V+ V + Sbjct: 63 PKVLVLSLSGGVDSMTHLYLLSKLQQPLGF---KLVACHIRHSNRDDAIQELQWVTYVTA 119 Query: 79 RLRIAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINAT--------- 120 RL + K +P L R+ R+++ ++ K A Sbjct: 120 RLGVPLYHHHVKLRRPHGSLKTGISRMDYEKQTRDIRFSMYAKAHKLAWAAAGLPEEERT 179 Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRP-FLRCRRE 175 +++ H DD E + G+ + D + RP L R+E Sbjct: 180 QPVVVVGHHMDDVDENRLAELGKGNLLNINGMVINAEGDGDDEIGGVCQVRPLLLSTRKE 239 Query: 176 DIRSFLLQRNISW 188 ++ + + NI + Sbjct: 240 ELIACAARHNIPY 252 >gi|186477640|ref|YP_001859110.1| C32 tRNA thiolase [Burkholderia phymatum STM815] gi|205830570|sp|B2JIL8|TTCA_BURP8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|184194099|gb|ACC72064.1| PP-loop domain protein [Burkholderia phymatum STM815] Length = 336 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 86/262 (32%), Gaps = 29/262 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 67 GDKVMVCLSGGKDSYAMLDVLMRL-RERAPIHFDIVAVNLD-QKQPG---FPEHVLPEYL 121 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S+L I + + + + + R ++ A + AT I H DD Sbjct: 122 SKLDIPYHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 182 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELRQFPII- 236 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-------IPK 240 P N +R ++ +R+ D F L V + + + Sbjct: 237 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALSNVVPSHLMDHKLFPFASLRA 295 Query: 241 YLTVHMRSIIAISQDILNIDST 262 IA ++ + DS Sbjct: 296 TGEADPHGDIAFDEEPCSADSA 317 >gi|167040416|ref|YP_001663401.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514] gi|300913703|ref|ZP_07131020.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561] gi|307723282|ref|YP_003903033.1| ATPase [Thermoanaerobacter sp. X513] gi|166854656|gb|ABY93065.1| PP-loop domain protein [Thermoanaerobacter sp. X514] gi|300890388|gb|EFK85533.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561] gi|307580343|gb|ADN53742.1| ATPase [Thermoanaerobacter sp. X513] Length = 297 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 20/212 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL + + L ++VA+SGG DS+ L + + I I+ + Sbjct: 30 FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKKLGYEVLGFFIDLG-ITQN-D 87 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---- 117 +++ V + C I +V K + A + R I K Sbjct: 88 FSPRSREV---VENFCKEHDIPLEIVDLKAGYGKGIPEVAKKHDRICAICGVTKRHLMNE 144 Query: 118 -----NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 NA + T HT DD + + R D G+ + + +P Sbjct: 145 YTLAVNADALATGHTLDDMAKLLLANLMRWDLHHLAKGIPTLPAEPGFAKK---IKPLAF 201 Query: 172 CRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 ++I +F NI E P + ++ R Sbjct: 202 QSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233 >gi|94266223|ref|ZP_01289931.1| PP-loop [delta proteobacterium MLMS-1] gi|93453196|gb|EAT03657.1| PP-loop [delta proteobacterium MLMS-1] Length = 290 Score = 95.4 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 28/236 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----------- 62 + L +++AVSGG DS+ L L + ++ + A+ +D Sbjct: 51 QMLADGDRVMIAVSGGIDSLVLCRLL-EIWRRKAPIDYELLAVHLDMGFAGYVPPPELGN 109 Query: 63 RE----TAKD--EVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALI 110 + A V + + + + ++ R A + Sbjct: 110 QPPGTINAPLPGTAAAVEAQLQLIGLPYYIEETSCGPEAMAAEGGKNGCYHCASRRRARL 169 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 E A+ + H +D +ET ++ G + + + L+ L + RP Sbjct: 170 FELARERGCNKLALGHHREDIIETFFLNLLYG----GNLSTMVPNQHLFAGRLQLIRPLA 225 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + + + +P D +R ++R+ + I L+ F L Sbjct: 226 LLEKAMVHQLGELFKVEAVANPCPLTDHSQRHQIRQLLHTITGDDPRLQANIFAAL 281 >gi|302386913|ref|YP_003822735.1| Rhodanese domain protein [Clostridium saccharolyticum WM1] gi|302197541|gb|ADL05112.1| Rhodanese domain protein [Clostridium saccharolyticum WM1] Length = 396 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 34/229 (14%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DSM + + F + + +D ET + + + + Sbjct: 147 DRIAVCISGGKDSMLMAKLFQELRRHNKFP-FELVFLVMDPGYNETNRQVIESNARL--- 202 Query: 80 LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I +V + + R + A+ + I H +DD +ET+ Sbjct: 203 LNIPITVFETQIFDAVYDVEKSPCYLCARMRRGYLYNKARELGCNKIALGHHYDDVIETI 262 Query: 136 YMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 M G + M + + + RP R +DI+ + + + + Sbjct: 263 LMGMM-----YGAQIQTMMPKLHSTNFEGMELIRPMYLIREDDIKDWRDYNGLHFIQCAC 317 Query: 194 NTDDRF---------------ERVRVRRFVRDIDLHALYLKMKKFQDLR 227 RF +RV ++ +R + Y++ F+ + Sbjct: 318 ----RFTDTCTTCRTDGSTGSKRVEIKNLIRQLKETNPYIESNIFKSVE 362 >gi|153852855|ref|ZP_01994292.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814] gi|149754497|gb|EDM64428.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814] Length = 384 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 15/188 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM + +L + + ++ E + + + D Sbjct: 142 GDKIAVCISGGKDSMLMAKLFQELLK-HGKANFELVFLVMNPGYNE--DNW-KIIQDNAK 197 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I +V + + R + HAK + I H FDD +ET Sbjct: 198 VLGIPLTVFETQIFDTVADIDKNPCYLCARMRRGYLYSHAKELGCNKIALGHHFDDVIET 257 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + M + M + ++ + + RP + +DI ++ +++ + Sbjct: 258 ILMGMFYGGKVETM--MPKLHSQNFE-GMELIRPMYLIKEDDIIAWRDYNQLNFIQCAC- 313 Query: 195 TDDRFERV 202 RF Sbjct: 314 ---RFTEN 318 >gi|115676810|ref|XP_795634.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115955398|ref|XP_001195059.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 1119 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 28/236 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVD-----HCLRETA 66 + L +LV +SGG DS+ LL L + + + A++VD R Sbjct: 876 KMLRDGDRVLVCLSGGKDSLSLLHCLRQYQFAAKKKGITFDLGAVTVDPQTPSFNPRP-- 933 Query: 67 KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQ--TGLMAAAREARYALISEHAKTINA 119 + ++L + + ++ S P + + + + A+ Sbjct: 934 ------LIGYLAKLGLPYFYEEQCIIDQAASLPDGCASICSFCSRMKRGRLYACARREGY 987 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ DD E+ M + + + + + + +L + RPF+ R +D+R Sbjct: 988 NVLAMGQHLDDLTESFLMSVFHNGFLR----TMKANYTVKEGDLRVIRPFVYVREKDLRD 1043 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F Q + N FE + R V+ + L + + L+ + +A Sbjct: 1044 FAEQAKLPVI--SENCPACFEAPKERHRVKQLLASQELLFPRLYPSLQTALRPLMA 1097 >gi|292492922|ref|YP_003528361.1| PP-loop domain protein [Nitrosococcus halophilus Nc4] gi|291581517|gb|ADE15974.1| PP-loop domain protein [Nitrosococcus halophilus Nc4] Length = 302 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 26/275 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L ++ + A+++D + ++ Sbjct: 35 AKDRVMVCLSGGKDSYALLDILLNLQKHAPV-DFELIAVNLD-QKQPG---FPEHILPQY 89 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R ++ A+ + AT I H D Sbjct: 90 LESLGVPYQIVERDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRD 149 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188 D LET+++ L GM +L D I RP CR +D+ + + Sbjct: 150 DILETLFLNMFHGGT-----LKGMPPKLLSDDGKHIVIRPLAYCREKDLEVYAKIKAFPI 204 Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTV 244 P N +R ++ ++ D F+ L+ VK ++ + + + Sbjct: 205 I--PCNLCGSQANLQRQAIKEMMKTWDRQFPGRLETMFRALQNVKPSHLADSTLYDFKGL 262 Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279 + + D + S + G+ Sbjct: 263 RKQGT-PFPEGDKAFDEEIFLESQEKSLSFNRGRA 296 >gi|239789230|dbj|BAH71252.1| ACYPI006714 [Acyrthosiphon pisum] Length = 333 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L L ++ ++R ++K +S+D + D ++ V + + Sbjct: 53 VAIAASGGKDSTVLAQVLKTL-NERYNYELKLVLLSIDEGITGYRDDSLKTVLENKDEYQ 111 Query: 82 IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + ++S++ + R + A +N I T H DD Sbjct: 112 MPLKILSYQQLYGWSMDKIVAEVGRKNNCTFCGVFRRQALDRGAMLLNVDCIATGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + + + + + +P ++I + + +++ Sbjct: 172 IAETVLMNILRGDVARLQRCVNI--ITITEGTIPRCKPLKYTYEKEIVMYAYFKKLNYFS 229 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 230 TECIFAPNAYRGYARTFLKDLE 251 >gi|193645837|ref|XP_001944809.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Acyrthosiphon pisum] Length = 333 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L L ++ ++R ++K +S+D + D ++ V + + Sbjct: 53 VAIAASGGKDSTVLAQVLKTL-NERYNYELKLVLLSIDEGITGYRDDSLKTVLENKDEYQ 111 Query: 82 IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + ++S++ + R + A +N I T H DD Sbjct: 112 MPLKILSYQQLYGWSMDKIVAEVGRKNNCTFCGVFRRQALDRGAMLLNVDCIATGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + + + + + +P ++I + + +++ Sbjct: 172 IAETVLMNILRGDVARLQRCVNI--ITITEGTIPRCKPLKYTYEKEIVMYAYFKKLNYFS 229 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R F++D++ Sbjct: 230 TECIFAPNAYRGYARTFLKDLE 251 >gi|3128173|gb|AAC16077.1| hypothetical protein [Arabidopsis thaliana] Length = 358 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 17/225 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +S+D Sbjct: 42 FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 161 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218 Query: 171 RCRREDIRSFLLQRN---ISWCEDPSNTDDRFERVRVRRFVRDID 212 ++I + N + + R R F++D++ Sbjct: 219 YTYEKEIVIYPSLHNAFKLDYFSTECIYSPNAYRGFAREFIKDLE 263 >gi|325282320|ref|YP_004254861.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus proteolyticus MRP] gi|324314129|gb|ADY25244.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus proteolyticus MRP] Length = 292 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 19/190 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + I+V +SGG DS LL L + R+ + + A+++D + +V Sbjct: 29 RMIEEGDRIMVCLSGGKDSYTLLDVLLHLQK-RAPVRFEVVAVNLDQG-QPGFPKDVLP- 85 Query: 74 SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 S L + H +++ + R ++ HA+ + AT I H Sbjct: 86 -RYLSELGVPHDILTEDTYSVVKEKIPEGKTTCSLCSRLRRGILYAHARRLGATKIALGH 144 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185 DD LET++M G L M + D + RP I ++ R Sbjct: 145 HRDDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVPESQIIAYAGARG 199 Query: 186 ISWCEDPSNT 195 P N Sbjct: 200 FPII--PCNL 207 >gi|223984482|ref|ZP_03634615.1| hypothetical protein HOLDEFILI_01909 [Holdemania filiformis DSM 12042] gi|223963553|gb|EEF67932.1| hypothetical protein HOLDEFILI_01909 [Holdemania filiformis DSM 12042] Length = 263 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 19/234 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAK--DEVRYV 73 I V VSGG DSM LL LH + + I + + D + Sbjct: 24 HDRIAVGVSGGKDSMLLLYCLHLYQQFCQRIQSKQFEVVGIHIQMGF-PSMDFTDAAVFF 82 Query: 74 SDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 RL + + ++ + + + + + ++ AK T + AH D Sbjct: 83 KQHGIRLELVPSRIYDILKIQANDDGSLKCSLCSTLKKGAVNRAAKDFGCTKVAFAHHGD 142 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + G + L + + RPF+ R IR+ + ++ Sbjct: 143 DAIETLLMNAIYG----GRLATFAPKMYLSNAEMPFIRPFIYARENQIRAAVESCHVPVV 198 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + + D + R R+ ++++ L LY + +D + + + L + Sbjct: 199 K-STCPMDGYTR---RQDMKEM-LERLYAEYPMARDNFLLMLHNEKQLSLWHEE 247 >gi|27365903|ref|NP_761431.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio vulnificus CMCP6] gi|81448038|sp|Q8D9J0|TTCA_VIBVU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|27362052|gb|AAO10958.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus CMCP6] Length = 310 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 24/258 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLDILISLQKSAPIS-FSLVAVNLD-QKQPG---FPAHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V + R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMAGYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R +++ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267 Query: 247 RSIIAISQDILNIDSTLL 264 + I+ + D + Sbjct: 268 KDSGVINGGDIGFDKEEM 285 >gi|78067798|ref|YP_370567.1| PP-loop superfamily ATPase [Burkholderia sp. 383] gi|123567481|sp|Q39C93|TTCA_BURS3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|77968543|gb|ABB09923.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia sp. 383] Length = 331 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 42 LFKRIVRQVGQAIGDFNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +R+ D F L Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVENMFNAL 270 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ + DI Sbjct: 271 AKVVPSHLMDTTLYPFQSLRASGVADPQGDI 301 >gi|300114179|ref|YP_003760754.1| PP-loop domain-containing protein [Nitrosococcus watsonii C-113] gi|299540116|gb|ADJ28433.1| PP-loop domain protein [Nitrosococcus watsonii C-113] Length = 294 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L S+ K A+++D + +V Sbjct: 38 GDRLMVCLSGGKDSYALLDILLSLQQHAPI-KFDLIAVNLD-QKQPG---FPEHVLPRYL 92 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V + + R ++ A+ + AT I H DD Sbjct: 93 ESLGVPYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEALGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET ++ KGM + D D + RP CR +D+ S+ +N Sbjct: 153 ILETFFLNMFHGGTLKGMPPKLLSD----DGKHMVIRPLAYCREKDLASYAQLKNFPII- 207 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ ++ D F+ L+ + +A R Sbjct: 208 -PCNLCGSQANLQRQVIKAMMKAWDKQFPGRLETMFRALQNVKPSHLADSTLYNFQGLQR 266 Query: 248 SIIAISQDILNIDSTLL 264 + D +L Sbjct: 267 QETPFPEGDKAFDEEIL 283 >gi|330805982|ref|XP_003290954.1| hypothetical protein DICPUDRAFT_38317 [Dictyostelium purpureum] gi|325078876|gb|EGC32504.1| hypothetical protein DICPUDRAFT_38317 [Dictyostelium purpureum] Length = 372 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 14/206 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++L+ + + +S+D + D + V Sbjct: 64 RGDRVAIGASGGKDSTVLAEVL-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 122 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +I ++S+K G R + A + A I+T H Sbjct: 123 EQYQIPLKILSYKELYNWTMDEIVKEIGLKGNCTFCGVFRRQALDRGAVILKANKIVTGH 182 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ETV M R + + + L S+PF +++I + + + Sbjct: 183 NADDIAETVLMNLLRGDIPRLQRCVYIITGS--EGALPRSKPFKYTYQKEIVMYAYFKKL 240 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212 + R R F++D++ Sbjct: 241 DYFSTECIYAPNAYRGHARDFLKDLE 266 >gi|33594173|ref|NP_881817.1| hypothetical protein BP3273 [Bordetella pertussis Tohama I] gi|81424444|sp|Q7VU56|TTCA_BORPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|33564248|emb|CAE43539.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gi|332383588|gb|AEE68435.1| hypothetical protein BPTD_3232 [Bordetella pertussis CS] Length = 320 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 20/223 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ F + A+++D + E+ D Sbjct: 45 AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--DYL 100 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + + + + + R ++ A + AT I H DD Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T ++ KGM + D + RP + D+ ++ + Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLVYVPESDLIAYAQFKQFPII- 215 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R +++ D F L V Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257 >gi|268592643|ref|ZP_06126864.1| PP-loop family protein [Providencia rettgeri DSM 1131] gi|291311783|gb|EFE52236.1| PP-loop family protein [Providencia rettgeri DSM 1131] Length = 304 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L S+ + A+++D + ++ Sbjct: 34 GDRIMVCLSGGKDSYTLLSILQSLQKSAPI-QFSLIAVNLD-QKQPG---FPEHILPAYL 88 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 89 DKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F ++ Sbjct: 149 ILQTMFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAKDFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F+ + V + + Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTELFDFKNISH 262 Query: 248 SIIAISQDILNIDSTLL 264 I+ L D L Sbjct: 263 GDEVINGGDLAFDKEEL 279 >gi|331240158|ref|XP_003332730.1| protein VEG136 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311720|gb|EFP88311.1| protein VEG136 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 392 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 17/211 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A SGG DS L + ++ ++R + +S+D + D + V Sbjct: 121 KGEKVAIAASGGKDSTVLAHVMTTL-NERYNYGLDLYLLSIDEGITGYRDDSLETVKRNS 179 Query: 78 SRLRIAHSVVSW----KNSKPQTGLMAAARE--------ARYALISEHAKTINATLIMTA 125 S+ + V+S+ + + R+ R + + A + I+T Sbjct: 180 SQYSLPLKVLSYNELYQGWTMDKVVENVGRKSNCTFCGVFRRQALDKGADLLKVDHIVTG 239 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI----SRPFLRCRREDIRSFL 181 H DD ETV M R + + + I S+PF ++I + Sbjct: 240 HNADDVAETVLMNVLRGDIARLERCTEITTGGTAKGTSGIPVKRSKPFKYAYEKEIVMYA 299 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + R R V+D++ Sbjct: 300 YFKKLDYFSTECTYSPEAYRGHARALVKDLE 330 >gi|150401224|ref|YP_001324990.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013927|gb|ABR56378.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3] Length = 311 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 20/195 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ I+V +SGG DS+ + L + + + + VD + K+ + + Sbjct: 48 KNITKDMTIIVGLSGGKDSLVMAHVLKELY--KPIPNTRIIGVMVDEGIEGYRKEGITHA 105 Query: 74 SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTIN 118 + C + + + ++K R ++++ + N Sbjct: 106 IEFCEEYNMEYKIATFKETVGYNLDEIVKIAKEKNVNLNPCTFCGVIRRKILNKVSLNEN 165 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 A + H DD + V M + K L + L+ + +P ++ Sbjct: 166 ADYLAIGHNLDDIAQAVMMNYIKGDINKLAILGKDAGSSLFVKRM---KPLQDIPEHEVL 222 Query: 179 SFLLQRNISWCEDPS 193 F +++ +DP Sbjct: 223 LFADLIGLNYHKDPC 237 >gi|312137453|ref|YP_004004790.1| pp-loop domain protein [Methanothermus fervidus DSM 2088] gi|311225172|gb|ADP78028.1| PP-loop domain protein [Methanothermus fervidus DSM 2088] Length = 297 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 85/196 (43%), Gaps = 16/196 (8%) Query: 4 SPIESVRFFVRS--LVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 ++ +R V++ L+ ++ VA+SGG DS+ L AL ++ ++ +F K +AI +D Sbjct: 22 ELMKKIRRVVKNYKLIENGDVISVALSGGKDSLLTLYALKNLQNEINF---KLNAIFIDE 78 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---------AREARYALIS 111 ++ K+ ++Y+ +L + S+K R L++ Sbjct: 79 GIKNYRKNALKYLRKHVKKLEVELIKKSFKEEFGFKVDEIKDYFDTPCIPCGIFRRYLLN 138 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + A + A+ + T H DD++++ M R + D ++ + +P Sbjct: 139 KTAYEVGASKLATGHNLDDEIQSFLMSLVRGDTFRFYKFGPKLD-RIHPKLIPRIKPLWE 197 Query: 172 CRREDIRSFLLQRNIS 187 +++ ++++ +I Sbjct: 198 VSEKEVIDWVVKNDIE 213 >gi|309799284|ref|ZP_07693532.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302] gi|308117129|gb|EFO54557.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302] Length = 266 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 15/156 (9%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 ++T ++TAH DDQ+ETV+MR R + LS + + +D + RP L Sbjct: 1 MGKTSSTALVTAHHADDQVETVFMRMIRG--VRLQHLSAIKERQTFDKG-ELIRPLLSFY 57 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNN 232 ++D I ED +N ++ + R RVR ++ ++ + +K + F + +V++ Sbjct: 58 KKDFPE------IEHFEDRTNEENYYFRNRVRNIYLPQLEKENIQVK-RAFLEFGKEVSD 110 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 L TV++ + L LL Sbjct: 111 YQIALTELSQTVNVEDLT----QFLFFSEATQRILL 142 >gi|332970898|gb|EGK09874.1| PP-loop domain protein [Psychrobacter sp. 1501(2011)] Length = 369 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 29/282 (10%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++R F +++ ++ V VSGG DS LL L + + I F ++V+ ++ Sbjct: 78 AIRDF--NMIEDGDVVMVCVSGGKDSYTLLDILLFL---KRIAPINFDVVAVN-LDQKQP 131 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINA 119 + + I H ++ + +A R + AK I A Sbjct: 132 GYPEDILPNYLQEQGIPHYILEKDTYSVVKSVVPEGKTYCSACSRLRRGSLYGFAKQIGA 191 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD L T ++ + K M + D D + RP +DI Sbjct: 192 TKIALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNVLIRPLAYVEEKDIIK 247 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + + P N + R + D+ ++++ D + ++ + Sbjct: 248 YARYKEFPII--PCNLCGS-QENLQRAMINDM--------LREWDDAHPQRLASIFKAMQ 296 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281 + + L +D GG+ L Sbjct: 297 NVAPSQLADRELFDFESLKLDRDESERPFEGVNIQVGGEADL 338 >gi|323698074|ref|ZP_08109986.1| PP-loop domain protein [Desulfovibrio sp. ND132] gi|323458006|gb|EGB13871.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132] Length = 249 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 15/218 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 A I +A+SGG DS L++ + ++ ++ A+ V+ + V C+ Sbjct: 31 GARIGLAISGGVDS-FLMLKVMTIRRAIMPFPVELMALHVNPGFDPASH--APLVR-WCA 86 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +A V + + R + E + N T + H DD Sbjct: 87 ENGLAAHVELTDFGPRAHTEENRKNSPCFWCAMQRRKRLFELCRDYNLTHLAFGHNADDN 146 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + T +M ++ G+ + + L + RP + ++ + Q + E+ Sbjct: 147 VITFFMNVVQNGRADGLS----ANEPFFGGKLKVIRPTMLLDKKTVIKAAAQWELPIWEN 202 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 ++ +R + ++R + +K F + + Sbjct: 203 VCPSNGFTKRDEIHEWLRAMWRKDKRIKNNIFNAITRQ 240 >gi|46581643|ref|YP_012451.1| hypothetical protein DVU3241 [Desulfovibrio vulgaris str. Hildenborough] gi|120601198|ref|YP_965598.1| PP-loop domain-containing protein [Desulfovibrio vulgaris DP4] gi|46451066|gb|AAS97711.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561427|gb|ABM27171.1| PP-loop domain protein [Desulfovibrio vulgaris DP4] gi|311235285|gb|ADP88139.1| PP-loop domain protein [Desulfovibrio vulgaris RCH1] Length = 248 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 23/200 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----EVR 71 L A I VAVSGG DS LL L + + A+ V+ + Sbjct: 27 LYPGARIGVAVSGGMDSWVLLQVL-RIRQRIVPFPFEIMALHVNPGFDPENHAPLLPWLE 85 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMT 124 R +A + + A R + E + + Sbjct: 86 -------RNGVAAHIEVTDHGPRAHSPENRRNSACFYCAWLRRKRLFELCAQYRLSHLAF 138 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD + T M ++ GM + + L + RP L + DI + Q Sbjct: 139 GHNADDLVGTFLMNLYQNGRVDGMSM----KEAFFGGRLQVIRPLLMVEKSDIARAVRQW 194 Query: 185 NISWCEDPSNTDDRFERVRV 204 + +P + R V Sbjct: 195 GLPVWSNPCPSAGATRRSEV 214 >gi|124026994|ref|YP_001012314.1| ATPase [Hyperthermus butylicus DSM 5456] gi|123977688|gb|ABM79969.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus DSM 5456] Length = 341 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 16/201 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +E V +L ILVA+SGG DS L AL + I+ AI + Sbjct: 48 RKVERTLRRVGALRKGVKILVAISGGKDSAVTLAALSDLAKK---YGIEVYAIHLRLGFG 104 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112 E + V +C+ L I VV + AR+AR ++ Sbjct: 105 EFSAKVEERVRSLCNMLGIPCIVVDV-AEAVGDPVHILARKARRPACSVCGLVKRYFLNA 163 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + A + H DD + +++ + + + G T + DL + RP Sbjct: 164 SAIELGADYVALGHNADDII-AYSIKAFLNQDLEALAKFGPVTTSIDDLAVARLRPLYEV 222 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++ + + R + D Sbjct: 223 YEKEDVLYAILRGLPVVFDKC 243 >gi|293375997|ref|ZP_06622255.1| PP-loop family protein [Turicibacter sanguinis PC909] gi|325842257|ref|ZP_08167649.1| PP-loop family protein [Turicibacter sp. HGF1] gi|292645374|gb|EFF63426.1| PP-loop family protein [Turicibacter sanguinis PC909] gi|325489663|gb|EGC92023.1| PP-loop family protein [Turicibacter sp. HGF1] Length = 244 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 23/223 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY-- 72 + + V VSGG DSM LL ALH F +KF + + L + Sbjct: 18 IQEGDRVAVGVSGGKDSMALLYALHLYQK---FAPVKFELVGITLKLGFPGMD----FNP 70 Query: 73 VSDVCSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 V + C I + ++ + + + + A++ + + I Sbjct: 71 VVEFCKEHGIEYHLVDTQVYEILQLNADENGKIPCSLCSKFKKAILIKKGVELGCNKISM 130 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 AH DD +ET+ M G + L ++ RP + C +DI S + Sbjct: 131 AHHADDAVETLVMN----TMYNGYMATFKPKMYLDRTDVTFIRPLVYCYEDDIISAANRH 186 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + D +R V++ ++ + K L Sbjct: 187 -VPIVPSTCPMDKHTKREDVKQLLKKLYRDYPMAKQNMLNALS 228 >gi|209517341|ref|ZP_03266184.1| PP-loop domain protein [Burkholderia sp. H160] gi|209502224|gb|EEA02237.1| PP-loop domain protein [Burkholderia sp. H160] Length = 330 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 62 GDKVMVCLSGGKDSYAMLDILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 116 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 117 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 176 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 177 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 231 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ +RD + K+F + NA++ ++P +L H Sbjct: 232 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 280 >gi|332158560|ref|YP_004423839.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2] gi|331034023|gb|AEC51835.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2] Length = 302 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 31/209 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE R L +LVAVSGG DS L + + ++ + Sbjct: 36 RTIEKYRL----LKKNEKVLVAVSGGKDSAVTAYVLKKL-------GYNIECLHINLGIG 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHA 114 E ++ Y C + +V + R RY ++++ A Sbjct: 85 EYSEKSEMYARKQCELIGAKLHIVRIREILGYGIGEVRTRRPPCSYCGLTKRY-IMNKFA 143 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172 I T H DD+ + + + M IL ++ +P Sbjct: 144 YDNGFDAIATGHNLDDEA-SFLLN---NLLHWNMEYIARGGPILPRQGKFVKKVKPLYEV 199 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFER 201 ++ ++ L + + + + R Sbjct: 200 TEREVVAYALAIGLEYIVEECP----YAR 224 >gi|66811248|ref|XP_639332.1| ATP-binding domain-containing protein 3 [Dictyostelium discoideum AX4] gi|161788992|sp|Q94480|CTU1_DICDI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=ATP-binding domain-containing protein 3; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|60467891|gb|EAL65904.1| ATP-binding domain-containing protein 3 [Dictyostelium discoideum AX4] Length = 360 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 18/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + ++L+ + + +S+D + D + V Sbjct: 57 RGDRVAIGASGGKDSTVLAEIM-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 115 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + +I ++S+K G R + A + A I+T H Sbjct: 116 EQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGH 175 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV M R + C I+ + R PF +++I + + Sbjct: 176 NADDIAETVLMNLLRGDIPR----LQRCVNIITGSEGALPRSKPFKYTYQKEIVMYAYFK 231 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 232 KLDYFSTECIYAPNAYRGHARDFLKDLE 259 >gi|107023912|ref|YP_622239.1| C32 tRNA thiolase [Burkholderia cenocepacia AU 1054] gi|123371203|sp|Q1BSY9|TTCA_BURCA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|105894101|gb|ABF77266.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia cenocepacia AU 1054] Length = 326 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 37 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 95 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 96 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 151 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 152 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 207 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +R+ D F L Sbjct: 208 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 265 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 266 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 296 >gi|149236786|ref|XP_001524270.1| VEG136 protein [Lodderomyces elongisporus NRRL YB-4239] gi|226711426|sp|A5E3Q3|CTU1_LODEL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 gi|146451805|gb|EDK46061.1| VEG136 protein [Lodderomyces elongisporus NRRL YB-4239] Length = 379 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 17/181 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L + ++ ++R +K + +D ++ + V Sbjct: 72 VAIGASGGKDSTVLASVMKTL-NERYNYGLKLVLLCIDEGIKGYRDHSLETVKMNQKEYD 130 Query: 82 IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + ++S+K+ R + + A+ + I+T H DD Sbjct: 131 MPLEILSYKDLYDWTMDEVVSCAGIRSSCTYCGVLRRQALDKGAEKLGINHIVTGHNADD 190 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188 ETV + R + + I N I R PF +++I + +N+++ Sbjct: 191 MAETVLLNLLRGDINR---IENSTKIITDSENSVIQRSKPFAYMSQKEIVLYAHYKNLTY 247 Query: 189 C 189 Sbjct: 248 F 248 >gi|170734333|ref|YP_001766280.1| C32 tRNA thiolase [Burkholderia cenocepacia MC0-3] gi|205830562|sp|B1JZU7|TTCA_BURCC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|169817575|gb|ACA92158.1| PP-loop domain protein [Burkholderia cenocepacia MC0-3] Length = 331 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 42 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 270 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301 >gi|84489110|ref|YP_447342.1| ATPase [Methanosphaera stadtmanae DSM 3091] gi|84372429|gb|ABC56699.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091] Length = 283 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 11/206 (5%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I++ VSGG DS+ L L+ + + A+ +D + + + + C Sbjct: 28 KNEKIMIGVSGGKDSILTLHMLYQYRQESGI-DFELEAVCIDEGICGYREHGIESAKENC 86 Query: 78 SRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 L I ++ S+K+ R L+++ + + I T H Sbjct: 87 KNLDIPLTIASFKDEWNYNLDDIHNLYKSTCMPCGVYRRYLLNKVSDSHKCDKIATGHNM 146 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD++++ M R+ K + + I + I +P + +D+ + + NI Sbjct: 147 DDEIQSFLMTFARNDQNKFPKFGPILNRIDKHMVPRI-KPLWQLPEKDVGIWCIVNNIPI 205 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214 ++ R V+ F+ ++ + Sbjct: 206 HDEECPYSVTSLRSDVKLFLNKLEEN 231 >gi|320585793|gb|EFW98472.1| pp-loop family protein [Grosmannia clavigera kw1407] Length = 686 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 22/171 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------FS 54 MF+S + S F S +A+SGG DSM L + + +I F+ Sbjct: 1 MFVSFVLSSSFVAHSS------ALAISGGVDSMALAFLCSQLRRVDPWFRIADAPVGGFT 54 Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARY 107 A+ VDH LR+ + E + V++ L H W +S + + AAR RY Sbjct: 55 ALIVDHRLRDGSAVEAQAVAEAVRNLG--HRTQVWALTNFGGSSSSSSSSIETAARHFRY 112 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 + ++ AH DDQ ETV +R Y G G+ G+ Sbjct: 113 RCLGVRMAQSRLVSLLLAHHADDQYETVLLRLLTGYGLHG-GIRGLRGMRP 162 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 2/96 (2%) Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218 DL + RP L + + + N+ W EDP+N D R VR R L A Sbjct: 261 DLGIVAYRPLLAFPKARLIATCEAHNVPWFEDPTNADPGLTLRNAVRHIARHHRLPAALQ 320 Query: 219 KMKKFQDLRVKVNNAVAMLIPK-YLTVHMRSIIAIS 253 + AVA L V R ++ S Sbjct: 321 PPSVLRLAERCHATAVAQEAEASRLLVRARVVVRFS 356 >gi|225075267|ref|ZP_03718466.1| hypothetical protein NEIFLAOT_00270 [Neisseria flavescens NRL30031/H210] gi|224953442|gb|EEG34651.1| hypothetical protein NEIFLAOT_00270 [Neisseria flavescens NRL30031/H210] Length = 319 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVSLERGQSLKHGGDLAFDSEKM 280 >gi|15606536|ref|NP_213916.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5] gi|2983761|gb|AAC07321.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5] Length = 301 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 22/229 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + +LVA+SGG DS+ L L + + I + E ++ Sbjct: 42 FKMFTKKDKVLVAISGGKDSLALWHVLRKLGYEADGLYINL-------GIGEYSEKSKEK 94 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREA--------RYALISEHAKTINATLI 122 V ++ +V K + +REA RY ++ AK +I Sbjct: 95 VLKFAEKINGKAIIVDLKEELAGIPELVKITSREACSVCGLVKRYN-FNKVAKEHGYNVI 153 Query: 123 MTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 T H DD+ + + G + + + + +PF + ++ + Sbjct: 154 ATGHNLDDEASALLANVLNWNEKYLGRKYPVLEEEAGF---VRKVKPFCKFTEKETALYA 210 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 L I + E+ + V ++ + +I+ + K++ + D K+ Sbjct: 211 LLNGIDFIEEECPFSEDATSVFYKKILNEIEERSPGTKLRFYLDYLRKI 259 >gi|15920850|ref|NP_376519.1| hypothetical protein ST0630 [Sulfolobus tokodaii str. 7] gi|15621634|dbj|BAB65628.1| 318aa long hypothetical veg136 protein [Sulfolobus tokodaii str. 7] Length = 318 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 26/228 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDH 60 F ++ + F S I VAVSGG DS LL + + + F I + + +D Sbjct: 34 FERIVDKYKMFENS----KKIAVAVSGGKDSTTLLHLMKKLSEKKGFEIIGINIDLGIDM 89 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALI 110 + ++K + + L + + +V K K + + + + + Sbjct: 90 GKQYSSKSTEFALKNF-EMLGVKYRIVRIKERYGFTIDDAKHKIKRPVCSTCGLVKRYTL 148 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 +E A+ A I+T H +D + M + + + + + +P Sbjct: 149 TEIAEEEGADTIVTGHNLNDMAQ-FIMAGYFNGDVRDLARLDIITPPEKGYKVTKVKPLF 207 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDID 212 ++I ++ L + I + D RV +RR + +++ Sbjct: 208 LIYEKEILTYALVKGIPFLYDSC---PHTFRVGGATQDTIRRKLEELE 252 >gi|269792410|ref|YP_003317314.1| PP-loop domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100045|gb|ACZ19032.1| PP-loop domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 247 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 16/214 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V F + I++ +SGG DSM LL L RS + +D T Sbjct: 19 KAVHLF-SMIAPGDRIMIGLSGGKDSM-LLSICLRELQRRSPVRFHLMTCFID----PTG 72 Query: 67 KD-EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + + + + + + ++ + + + R +++ A+ Sbjct: 73 GEMDPAPFEEFSANIGVPFVLIRHDTFKIIEGRGERNPCSLCANLRRGILASAARERGCN 132 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD +ET M G S + N+ + RP + R I + Sbjct: 133 AIALGHHLDDAVETAMMNLL----MAGRFRSFEPAMTMSRSNVKVIRPLVLLRESAIEAE 188 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + + + P +R RV+ +R+I+ Sbjct: 189 VRRLGLKTMAPPCPFGRVTQRTRVKGLIREIESE 222 >gi|303247997|ref|ZP_07334263.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ] gi|302490554|gb|EFL50459.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ] Length = 255 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 17/187 (9%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-V 73 L A + VAVSGG DS+ +L L + ++ + ++ E + Sbjct: 33 QLAPKARVGVAVSGGVDSLVMLAVLA-IRRRIVPFPVELMLLHLN----PGFDKENHLPL 87 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D+ + + +A + ++ + R + + T + H Sbjct: 88 VDLAAEMGLAAHIEVTDFGPRAFSEENKKNSPCFYCAWLRRKRLFDLCAAYGLTHLAFGH 147 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD T ++ ++ G+ C + L + RP L ++ I + Sbjct: 148 NADDLAATFFLNMFQNGRVDGLS----CRESFFHGRLTVIRPLLLVDKKSIIRAAKAWEL 203 Query: 187 SWCEDPS 193 +P Sbjct: 204 PVFANPC 210 >gi|116690998|ref|YP_836621.1| PP-loop domain-containing protein [Burkholderia cenocepacia HI2424] gi|205830563|sp|A0KB51|TTCA_BURCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|116649087|gb|ABK09728.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia cenocepacia HI2424] Length = 331 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 42 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +R+ D F L Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 270 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301 >gi|304313052|ref|YP_003812650.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [gamma proteobacterium HdN1] gi|301798785|emb|CBL47018.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [gamma proteobacterium HdN1] Length = 284 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 17/179 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L ++ D K + A+++D + +E+ Sbjct: 36 GDRIMVCLSGGKDSYTMLDILMNLQHDAPV-KFELVAVNLD-QKQPGFPEEILPA--YLQ 91 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I ++ + + R + A+ I AT + H DD Sbjct: 92 ELGIPFYILEEDTYSVVKSHIPEGKTMCSLCSRLRRGHLYSFAEEIGATKVALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ G L GM +L D I RP C+ +DI + R Sbjct: 152 METLFLNMF-----YGGKLKGMPPKLLSDDGKHILIRPMAYCKEQDIIEYAAIREFPII 205 >gi|303246570|ref|ZP_07332848.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ] gi|302491910|gb|EFL51788.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ] Length = 302 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 20/198 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E+ ++ +LVAVSGG DS+ LL L + D + + V Sbjct: 30 FKKQVETAIRRHGMILPGEKVLVAVSGGKDSLALLRVLSDLGHD-------VAGLHVHLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112 + +++ C A V+ + + + + + + + Sbjct: 83 IPDSSDPVCERTEAYCRENGFALHVLRMADVGLAIPEVKDAVRRPICSVCGKIKRHYFNR 142 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171 A + T H DD++ ++ R L G + + + +P R Sbjct: 143 FAYENGYAALATGHNLDDEVARLFANVLR---WDAAYLGGQGPMLPAEGRFVRKIKPLYR 199 Query: 172 CRREDIRSFLLQRNISWC 189 + ++ + I Sbjct: 200 LTEFETAAYCFFKGIDHW 217 >gi|305662983|ref|YP_003859271.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] gi|304377552|gb|ADM27391.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] Length = 321 Score = 94.6 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 32/230 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 IL+AVSGG DSM LL ++S+ +RS ++ A+ +D + E ++ VS + Sbjct: 49 RILIAVSGGKDSMALLHIMNSISQERS---LRVLALHIDLGIGEYSRRSREIVSMIAKSF 105 Query: 81 RIAHSVVSWKNSKPQTGLMAA---AR--------EARYALISEHAKTINATLIMTAHTFD 129 I V K + R RY +++ A + AT + TAH D Sbjct: 106 GIDLIVYDLKRDLGLSLPEMKKGIRRGTCSLCGLVKRY-VMNTAAIELGAT-LATAHNAD 163 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQRNI 186 D + + L ++ ++ ++ RP + +++ +NI Sbjct: 164 DIAIYILKNIVIGDWNSCIKLV----PVIPEVKGYVAKKIRPLYEVYENEAMLYVVSQNI 219 Query: 187 SWCEDPSNTDDRFE-RV----RVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 + + + R RVR F+ ++ +K+ + + Sbjct: 220 PYVDMECP----YTYRGGIEERVREFLNKLEEERPGIKISFLRKFTRNIE 265 >gi|293606581|ref|ZP_06688938.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553] gi|292815057|gb|EFF74181.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553] Length = 231 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 25/235 (10%) Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R+ARYA ++ A+ A+L++ AH DDQ ETV +R R GM + Sbjct: 1 RDARYAALARLAQDEGASLVLLAHHRDDQAETVLLRLLRGAGVLGMAAM---SEVSQRDG 57 Query: 163 LWISRPFLRCRREDIRSFL----LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218 + RP+L R I +DP+N D R+ R VR + + L Sbjct: 58 ITYLRPWLGQDRATILEAADAVRQASGWQAVQDPTNADPRYTRAAVRELLAPV----LDG 113 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----------LNIDSTLLFYLL 268 + ++ + + +A + V + + +L Sbjct: 114 RWPGWRAIVARHAAHMAEAVQILDEVARDDFARLEPSADGVSFSLKAWRELSPARQAQVL 173 Query: 269 RVSAAICGGQISLPGYRSMERVMLF----LKSGKRGCVSIGRVVIDRRANFLWIT 319 R + G ++ L L ++ V V+ +W+ Sbjct: 174 RFWLHLNGARMPTDARLRDLLRQLRELHSLGHDRQLRVVQAGHVVRCHRGRVWVE 228 >gi|33603590|ref|NP_891150.1| hypothetical protein BB4618 [Bordetella bronchiseptica RB50] gi|81579749|sp|Q7WEL6|TTCA_BORBR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|33577715|emb|CAE34980.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 320 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 20/223 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ F + A+++D + E+ D Sbjct: 45 AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--DYL 100 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + + + + + R ++ A + AT I H DD Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T ++ KGM + D + RP D+ ++ + Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPESDLIAYAQFKQFPII- 215 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R +++ D F L V Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257 >gi|217968052|ref|YP_002353558.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724] gi|217337151|gb|ACK42944.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724] Length = 318 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 26/202 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F ++ ILVAVSGG DS+ L L S+ K + +D + Sbjct: 36 KAIKKYKMFEKN----DQILVAVSGGKDSLALWDILISL-------GYKADGLHIDLGIS 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEH 113 E ++ V + ++S K+ K + A + +++ Sbjct: 85 EYSEKSKETVKKFAESKNLKLHIISIKDLYGLGIKEIAHKNRKTPCATCGVIKRYIMNLA 144 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG--MCDTILYDLNLWISRPFLR 171 A + +I T H DD+ T+ + S + D + + +P R Sbjct: 145 ALELKYNVIATGHNLDDESATLLGNILHWQIDYLKAHSPILLEDEVGFARK---VKPLYR 201 Query: 172 CRREDIRSFLLQRNISWCEDPS 193 + ++ + + I + D Sbjct: 202 VSEYETSAYCIMKKIEYIIDEC 223 >gi|77165079|ref|YP_343604.1| ATPase [Nitrosococcus oceani ATCC 19707] gi|123594216|sp|Q3JAS2|TTCA_NITOC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|76883393|gb|ABA58074.1| tRNA s(2)C-32 sulfurtransferase [Nitrosococcus oceani ATCC 19707] Length = 302 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L S+ K A+++D + +V Sbjct: 36 GDRLMVCLSGGKDSYALLDILLSLQKHAPV-KFDLIAVNLD-QKQPG---FPEHVLPHYL 90 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L +++ +V + + R ++ A+ + AT I H DD Sbjct: 91 ESLGVSYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRDD 150 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET ++ L GM +L D I RP CR +D+ ++ + Sbjct: 151 ILETFFLNMFHGGT-----LKGMPPKLLSDNGRHIVIRPLAYCREKDLETYAHLKAFPII 205 Query: 190 EDPSNT 195 P N Sbjct: 206 --PCNL 209 >gi|308158669|gb|EFO61238.1| ATPase of the PP-loop superfamily implicated in cell cycle control, putative [Giardia lamblia P15] Length = 360 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 49/244 (20%) Query: 13 VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDE 69 + +L+ P I + VSGG DS +L LH++ + ++F ++V+ ++ + Sbjct: 50 IHNLIRPGESIALGVSGGKDSSVMLHILHTLRLRYQDVYDGVRFVMVAVNEGIQGYRGES 109 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQT----------------------GLMAA------ 101 + + + + +V +K +T L A Sbjct: 110 LACLQRLRKKYPYELEIVGFKERYGRTLDQIVNTVNGDSCNDTFAPIKADLEDANDTGRP 169 Query: 102 ------------AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 R +S + + T + T H DD ET+ + R A K + Sbjct: 170 QPTAKTTTACSFCGILRRNSLSYGSLQTHCTKVATGHNADDNAETILLNLIRGDAAKLV- 228 Query: 150 LSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207 C L DLN ++R P + DI + + + + R + R F Sbjct: 229 ---RCSEPLSDLNQGVARIKPLCNIAQRDIVIYAHLKRLDYFSVECPYATTALRGKPRSF 285 Query: 208 VRDI 211 + ++ Sbjct: 286 LTNL 289 >gi|308163116|gb|EFO65476.1| PP family ATPase [Giardia lamblia P15] Length = 301 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 21/223 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A+SGG DS LL L + + RS K ++V+ + + + Sbjct: 62 QGDRVALALSGGKDSWTLLHVLLDI-AKRSPVKFTVIPVTVETGYPGFEANVAKLTKYIE 120 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I H V+ N + T + R + H + + + H +D Sbjct: 121 ENLGIKHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTHCQKLGINKLALGHHRED 180 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 E++ M + G + N+ + RP + C ED ++ Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNS----EKNITLIRPMVFCAEEDTIAYARHSTFPIVT 236 Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQ 224 P + R ++ R+++ DI L + FQ Sbjct: 237 CNCPHEGNKEHRRYKIKQTILAMRQWIPDIQRSILTGATELFQ 279 >gi|189460555|ref|ZP_03009340.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136] gi|189432799|gb|EDV01784.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136] Length = 249 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 34/229 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73 ILV +SGG DS+ L+ L + S + A V + + ++ Y+ Sbjct: 31 GDKILVGLSGGKDSLA-LLELLARRSRIYKPRFSVVAAHVVMTNIAY------ESDMDYL 83 Query: 74 SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 L + V ++ S + R + AK I H Sbjct: 84 RSFAENLGVPF--VRYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN--- 185 DD LET+ M A +G + ++ ++ I RP D+ + Sbjct: 142 DDILETLLMNM----AFQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLIEMAQAKGYRK 197 Query: 186 ----ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + +D +D + V R + ++ A Y +++ + Sbjct: 198 QIKNCPYEKDSHRSDMK----EVLRTLERMNPEARYSLWGSMNNIQTDL 242 >gi|167392464|ref|XP_001740167.1| hypothetical protein [Entamoeba dispar SAW760] gi|165895845|gb|EDR23434.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 250 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 26/185 (14%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLR-ETAKDEV 70 I++ SGG DS L+ L + F + + V + L E + Sbjct: 32 APHDRIIIGFSGGKDSFLLVHILSVLGKTSHFP-LDILVVHVTNKQVGYQLNIEDS---- 86 Query: 71 RYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 +C + I + +++ T + R + E+AK T I Sbjct: 87 ---KALCESMGIPFITLESEPVSKIDIEDADKNTTFCLNCGKNRRRALLEYAKEHGYTSI 143 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 H DD ET+ M G S + RP + I+ + Sbjct: 144 ALGHHMDDVAETLLMNQM----FCGCIASIPAQFTTEKYGVKFIRPLIEVPVVFIQEWTK 199 Query: 183 QRNIS 187 + Sbjct: 200 YIKLP 204 >gi|254434620|ref|ZP_05048128.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27] gi|207090953|gb|EDZ68224.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27] Length = 304 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L S+ K A+++D + +V Sbjct: 38 GDRLMVCLSGGKDSYALLDILLSLQKHAPV-KFDLIAVNLD-QKQPG---FPEHVLPHYL 92 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L +++ +V + + R ++ A+ + AT I H DD Sbjct: 93 ESLGVSYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET ++ L GM +L D I RP CR +D+ ++ + Sbjct: 153 ILETFFLNMFHGGT-----LKGMPPKLLSDNGRHIVIRPLAYCREKDLETYAHLKAFPII 207 Query: 190 EDPSNT 195 P N Sbjct: 208 --PCNL 211 >gi|115947384|ref|XP_788702.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115954905|ref|XP_001175915.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 992 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 28/236 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVD-----HCLRETA 66 + L +LV +SGG DS+ LL L + + + A++VD R Sbjct: 749 KMLRDGDRVLVCLSGGKDSLSLLHCLRQYQFAAKKKGITFDLGAVTVDPQTPSFNPRP-- 806 Query: 67 KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQ--TGLMAAAREARYALISEHAKTINA 119 + ++L + + ++ S P + + + + A+ Sbjct: 807 ------LIGYLAKLGLPYFYEEQCIIDQAASLPDGCASICSFCSRMKRGRLYACARREGY 860 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ DD E+ M + + + + + + + +L + RPF+ R +D+R Sbjct: 861 NVLAMGQHLDDLTESFLMSAFHNGFLR----TMKANYTVKEGDLRVIRPFVYVREKDLRD 916 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F Q + N FE + R V+ + L + + L+ + +A Sbjct: 917 FADQAKLPVI--SENCPACFEAPKERHRVKQLLASQELLFPRLYPSLQTALRPLMA 970 >gi|91785571|ref|YP_560777.1| hypothetical protein Bxe_A0206 [Burkholderia xenovorans LB400] gi|123358392|sp|Q13T64|TTCA_BURXL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91689525|gb|ABE32725.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia xenovorans LB400] Length = 336 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 67 GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 121 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 122 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 182 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 236 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ VRD + K+F + NA+A ++P +L H Sbjct: 237 -PCNLCGSQPNLKRAEMKALVRDWE--------KRFPGRIENMFNALANVVPSHLMDH 285 >gi|14521864|ref|NP_127340.1| hypothetical protein PAB1092 [Pyrococcus abyssi GE5] gi|5459084|emb|CAB50570.1| Predicted ATPase of the PP-loop superfamilyl [Pyrococcus abyssi GE5] Length = 303 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 27/199 (13%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILVAVSGG DS L+ + + ++ + E +K Y Sbjct: 42 KLLKKDEKILVAVSGGKDSAVTAYVLNKL-------GYNIECLHINLGIGEYSKKSEEYA 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124 C + +V K R RY ++++ A I T Sbjct: 95 KKQCELIGAPLHIVRIKEILGYGIGEVKTRRPTCSYCGLTKRY-IMNKFAYDNGFDAIAT 153 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLL 182 H DD+ + + + +L ++ +P ++ ++ L Sbjct: 154 GHNLDDEA-SFLLN---NLLYWNTEYIAKGGPLLPAEGKFVKKVKPLYELTEREVVAYAL 209 Query: 183 QRNISWCEDPSNTDDRFER 201 + + + + R Sbjct: 210 AVGLEYIVEECP----YAR 224 >gi|148244684|ref|YP_001219378.1| hypothetical protein COSY_0536 [Candidatus Vesicomyosocius okutanii HA] gi|146326511|dbj|BAF61654.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii HA] Length = 246 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 14/189 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + +L+AVSGG DS+ L L +F +++D + E + Sbjct: 23 FKMIKKDDKVLLAVSGGKDSLSLFHIFRHFLVSAPIY-FEFGVVTIDPKI---DGFEPQA 78 Query: 73 VSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + ++ K + + L+ + A+ ++ H Sbjct: 79 LEYFFRKFDTPYFFETFSIMKQAEKSMKGNSYCSFCARIKRGLMYQVARREGYNVLALGH 138 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD E++ M + + M + D +L + RP R + F ++ Sbjct: 139 HLDDLAESLMMSMCHNGKIQTMKAHYIND----AKDLRVIRPLTYVRERQLADFAKITHL 194 Query: 187 SWCEDPSNT 195 +D Sbjct: 195 PVIKDSCPA 203 >gi|307596367|ref|YP_003902684.1| PP-loop domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551568|gb|ADN51633.1| PP-loop domain protein [Vulcanisaeta distributa DSM 14429] Length = 393 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 24/215 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LVAVSGG DS +L L ++ R K A +D + + V ++ RL Sbjct: 117 VLVAVSGGKDSSTMLHVLSTL---RDSLKFDIVAYHIDQGIPGYSDKARSAVEELARRLN 173 Query: 82 IAHSVVSW------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + ++ K K + + R + A +NA+ I T H D Sbjct: 174 VPLIISTFKEMLGVDQPTLIKGMKSRRPPCSVCGIIRRYSYNALAMELNASSIATGHHAD 233 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D + L + T ++ + RP ++ + L I + Sbjct: 234 DIASYALKAVLTHDYQSLTKL--LPKTEPFEGAVAHIRPLYEIYEKETLLYALASEIPFT 291 Query: 190 EDPSNTDDRFERV----RVRRFVRDIDLHALYLKM 220 P R ++ F+ +++ +K+ Sbjct: 292 ACPCPFRP---RNTLDDHIKEFLNNLETRHPGIKL 323 >gi|296157394|ref|ZP_06840229.1| PP-loop domain protein [Burkholderia sp. Ch1-1] gi|295892166|gb|EFG71949.1| PP-loop domain protein [Burkholderia sp. Ch1-1] Length = 339 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 29/261 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 70 GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 124 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 125 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 184 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 185 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 239 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPK 240 P N +R ++ VRD + F L V + + + Sbjct: 240 -PCNLCGSQPNLKRAEMKALVRDWEKRFPGRIENMFNALSNVVPSHLMDHKLFPFAALRA 298 Query: 241 YLTVHMRSIIAISQDILNIDS 261 + IA ++ + D+ Sbjct: 299 TGEADPQGDIAFDEEPCSTDA 319 >gi|254283800|ref|ZP_04958768.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR51-B] gi|219680003|gb|EED36352.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR51-B] Length = 302 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 22/230 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V VSGG DS +L L + + A+++D + +V + Sbjct: 57 SGDRVMVCVSGGKDSYTMLDLLMQLRVSAPV-DFELIAVNLD-QKQPG---FPEHVLPEY 111 Query: 77 CSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFD 129 +L I ++ + R + A+ I AT I H D Sbjct: 112 LEQLDIPFYILERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAEQIGATKIALGHHRD 171 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+++ K M + D D + RP C+ EDI + + Sbjct: 172 DIVETLFLNMFFGGKLKAMPPKLLSD----DGQNVVIRPLAYCKEEDISRYAQAQAFPII 227 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R V++ +RD + F+ + + +A Sbjct: 228 --PCNLCGSQENLQRANVKQMLRDWERQYPGRTETIFRSISNVSPSQLAD 275 >gi|304319948|ref|YP_003853591.1| ATPase of the PP superfamily protein [Parvularcula bermudensis HTCC2503] gi|303298851|gb|ADM08450.1| ATPase of the PP superfamily protein [Parvularcula bermudensis HTCC2503] Length = 285 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 15/183 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ + A LV +SGG DS LL L + + + A ++D + Sbjct: 39 EAISRYAMVSKPGARWLVCLSGGKDSYTLLTLLMDLKAQ-GRLDVDLVAANLD-QAQPGF 96 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINA 119 EV L +AH + + P L R + A+ Sbjct: 97 PTEVLP--HYLEGLGLAHRIDRRDTYSTVIEKTAPGQTLCTLCSRLRRGHLYRMAREEGC 154 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H DD LET ++ + M + M D + ++ + RP R DI Sbjct: 155 DAIALGHHADDILETFFLNLFHGGRLEAMSPNLMND----EGDVQVVRPLTLVREADIVR 210 Query: 180 FLL 182 F Sbjct: 211 FAE 213 >gi|313668399|ref|YP_004048683.1| hypothetical protein NLA_10940 [Neisseria lactamica ST-640] gi|313005861|emb|CBN87317.1| hypothetical protein NLA_10940 [Neisseria lactamica 020-06] Length = 319 Score = 94.2 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQSLKHGGDLAFDSEKM 280 >gi|269102678|ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162576|gb|EEZ41072.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 309 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L S+ K + A+++D + D + + Sbjct: 39 GDRIMVCLSGGKDSYAMLDILRSLQRSAPV-KFELIAVNLD-QKQPGFPD--HILPEYLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + +V+ + R ++ AK I AT I H DD Sbjct: 95 TLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTAKEIGATKIALGHHRDDM 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ G L M ++ D + RP CR +DI F + Sbjct: 155 LETLFLNMF-----YGGKLKSMPPKLVSDNGEHVVIRPLAYCREKDIERFAELKEFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F L+ V + +A + Sbjct: 209 -PCNLCGSQPNLQRQVIKDMLRDWDRRYPGRIETMFTALQNVVPSHLADFNLFDFKSVTK 267 Query: 248 SIIAISQDILNIDSTLL 264 I + D + Sbjct: 268 ESGTIDGGDIAFDKQEI 284 >gi|254805067|ref|YP_003083288.1| putative PP-loop ATPase [Neisseria meningitidis alpha14] gi|205830655|sp|A9LZH0|TTCA_NEIM0 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254668609|emb|CBA06181.1| putative PP-loop ATPase [Neisseria meningitidis alpha14] Length = 319 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280 >gi|86157330|ref|YP_464115.1| C32 tRNA thiolase [Anaeromyxobacter dehalogenans 2CP-C] gi|123499724|sp|Q2IPE3|TTCA_ANADE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|85773841|gb|ABC80678.1| tRNA s(2)C-32 sulfurtransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 290 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 17/234 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + E++R F + I+VAVSGG DS LL L + +R+ A+++D Sbjct: 11 LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67 Query: 61 CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113 + V D L + + V + R ++ Sbjct: 68 --QGQPGFPAHVVEDHLRSLGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A + T I H DD +ET+ + G S D + RP Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVIRPLCYAA 181 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ED+ +F D + R RV+R + ++ +K L Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHAL 235 >gi|159115248|ref|XP_001707847.1| ATPases of the PP-loop superfamily [Giardia lamblia ATCC 50803] gi|157435955|gb|EDO80173.1| ATPases of the PP-loop superfamily [Giardia lamblia ATCC 50803] Length = 301 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 21/223 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + +A+SGG DS LL L + + RS K ++V+ + + + Sbjct: 62 QGDRVALALSGGKDSWTLLHVLLDI-AKRSPVKFTVIPVTVETGYPGFEANVAKLTKYIE 120 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I H V+ N + T + R + H + + + H +D Sbjct: 121 ENLGIKHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTHCQKLGINKLALGHHRED 180 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 E++ M + G + N+ + RP + C ED ++ Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNS----EKNVTLIRPMVFCAEEDTIAYARHSTFPIVT 236 Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQ 224 P + R ++ R+++ DI L + FQ Sbjct: 237 CNCPHEGNKEHRRYKIKQTILTMRQWIPDIQRSILTGATELFQ 279 >gi|167756861|ref|ZP_02428988.1| hypothetical protein CLORAM_02410 [Clostridium ramosum DSM 1402] gi|167703036|gb|EDS17615.1| hypothetical protein CLORAM_02410 [Clostridium ramosum DSM 1402] Length = 258 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 20/223 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDV 76 + V VSGG DSM LL L S+ + K + ++ + ++ + Sbjct: 35 GDKVCVGVSGGKDSMLLLYCL-SLYKKFATVKFDVIGVHIEMGFPNMDFSEADA-----F 88 Query: 77 CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C + I ++ + + + + AL+ + AK + AH Sbjct: 89 CKKNGIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYRCNKVAFAHHG 148 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET++M G + L + RP + DI S + + ++ Sbjct: 149 DDAVETLFMNMIYG----GKIATFTPKMYLTRTEMNFIRPLVYAYESDIVSAVEEAHVPI 204 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 D +R + + D+ L K L + N Sbjct: 205 VPSTCPADKHTKREEFKHLLNDLYLKYPQAKSNLLTSLTNEEN 247 >gi|307731306|ref|YP_003908530.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1003] gi|307585841|gb|ADN59239.1| PP-loop domain protein [Burkholderia sp. CCGE1003] Length = 324 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 55 GDKVMVCLSGGKDSYAMLDILMRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 109 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 170 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ +RD + K+F + NA++ ++P +L H Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 273 >gi|323527653|ref|YP_004229806.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1001] gi|323384655|gb|ADX56746.1| PP-loop domain protein [Burkholderia sp. CCGE1001] Length = 324 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 55 GDKVMVCLSGGKDSYAMLDILMRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 109 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 170 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ +RD + K+F + NA++ ++P +L H Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 273 >gi|317153081|ref|YP_004121129.1| PP-loop domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943332|gb|ADU62383.1| PP-loop domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 249 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 34/230 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--SD 75 + A I +A SGG DS +L L ++ ++ A+ ++ D + D Sbjct: 30 HGARIGIAASGGVDSFLMLKVL-TIRQAIMPFPVELMALHINAGF-----DTASHAPLVD 83 Query: 76 VCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C+ ++A + + R + E + T + H Sbjct: 84 WCASHKLAAHIEVTDYGPRAHSEENRKKSPCFYCSMLRRKRLFELCRDYGLTHLAFGHNA 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD + T +M ++ +G+ + + +D L + RP + ++ + Q + Sbjct: 144 DDNVVTFFMNIFQNGRVQGLSV----NEPFFDGRLNVIRPTMLLDKKTVIRAAKQWELPV 199 Query: 189 CEDPSNTDDRFER--------------VRVRRFVRD-IDLHALYLKMKKF 223 E+ ++ R R R++ V + + H L L KK Sbjct: 200 WENTCPSNGRTRRDEIHDWLHQTWQNDNRMKNNVFNAVIRHQLDLTCKKL 249 >gi|187925700|ref|YP_001897342.1| PP-loop domain protein [Burkholderia phytofirmans PsJN] gi|205830571|sp|B2T6U6|TTCA_BURPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|187716894|gb|ACD18118.1| PP-loop domain protein [Burkholderia phytofirmans PsJN] Length = 336 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 29/262 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 67 GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 121 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 122 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 182 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 236 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-------IPK 240 P N +R ++ VRD + F L V + + + Sbjct: 237 -PCNLCGSQPNLKRAEMKALVRDWEKRFPGRIENMFNALSNVVPSHLMDHKLFPFAGLRA 295 Query: 241 YLTVHMRSIIAISQDILNIDST 262 + IA ++ + D+ Sbjct: 296 TGEADPQGDIAFDEEPCSTDAA 317 >gi|154483148|ref|ZP_02025596.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC 27560] gi|149735956|gb|EDM51842.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC 27560] Length = 376 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 21/238 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DSM + + F + + +D + + + RL Sbjct: 138 IAVCISGGKDSMLMAKLFQELKLHNKF-DFQVKFLVMDPGYSPANRQVIE---ENARRLN 193 Query: 82 IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I ++ + R + AK + I H +DD +ET+ M Sbjct: 194 IPITIYESDIFESVFNVEKSPCYLCARMRRGHLYSFAKEMGCNKIALGHHYDDVIETILM 253 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS---- 193 + M + ++ + + RP R +DI+++ ++ + + Sbjct: 254 GMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNDLHFIQCACKFTD 310 Query: 194 ------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 N ++R +R+ ++ +R++ Y++ F+ + N V + H Sbjct: 311 TCTTCNNNENRSKRMEIKDLIRELKKVNPYVEGNIFKSIENVNLNTVVAYKKDGVKHH 368 >gi|332796837|ref|YP_004458337.1| PP-loop domain-containing protein [Acidianus hospitalis W1] gi|332694572|gb|AEE94039.1| PP-loop domain protein [Acidianus hospitalis W1] Length = 319 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 24/226 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRY 72 + L+ IL+AVSGG DS+ L L S + + + A ++ + + E Sbjct: 42 QGLLKANKILLAVSGGKDSLTLADTLASFIDPK-----RLVAFNIVEGISGYNRKEQAEK 96 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE-------------ARYALISEHAKTI 117 + L I S+K+S T +AR R LI++ + + Sbjct: 97 LRKYLDDLGIELISTSFKDSVGYTLDEMVSSARAKGLNISACTFCGGFRRKLINDAGRQV 156 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A L+ T H DD+ +TV + R ++ + L G L D + +P + + Sbjct: 157 KADLVATGHNLDDEAQTVIVNILRGDVKRLVRL-GDVPLKLSDKFVLRVKPLRKIYEWET 215 Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHALYLKMK 221 + + + E R +VR + I+ ++ Sbjct: 216 TMYAFLKGFEFQEVECPYISARPTLRAKVRELLYLIEQQKPGSLLR 261 >gi|325678703|ref|ZP_08158312.1| PP-loop family protein [Ruminococcus albus 8] gi|324109604|gb|EGC03811.1| PP-loop family protein [Ruminococcus albus 8] Length = 290 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 15/180 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYV 73 + I V +SGG DSM + + + + + K+ F I +D + + + Sbjct: 33 IQEGDKIAVCISGGKDSMMMAMCMKRLQ---RYSKVPFDVEYIVMDPGYNAENR---QKI 86 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D ++L I + K + R + ++A+ + I H FD Sbjct: 87 IDNAAKLEIPVRIFDTKIFDSVVNVRQNPCYLCARMRRGYLYKNAQELGCNKIALGHHFD 146 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + + + RP R EDI + + + Sbjct: 147 DVIETILMGMLYGSQVQTMMPKIHSENF---EGMQLIRPLYMVREEDIIKWCRYNGLEFI 203 >gi|37526466|ref|NP_929810.1| C32 tRNA thiolase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81419231|sp|Q7N3Y7|TTCA_PHOLL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|36785897|emb|CAE14949.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 306 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ A+++D + ++ Sbjct: 36 GDRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 90 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K P+ + R ++ A + AT I H DD Sbjct: 91 GELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 150 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI + + Sbjct: 151 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYATAKAFPII- 205 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +R+ D F+ ++ V + ++ Sbjct: 206 -PCNLCGSQPNLQRQVIKDMLREWDKRYPGRIETMFRAVQNVVPSHLSDFNLFDFKSITH 264 Query: 248 SIIAISQDILNIDSTLL 264 I L D L Sbjct: 265 GSEVIDGGDLAFDREEL 281 >gi|226330282|ref|ZP_03805800.1| hypothetical protein PROPEN_04195 [Proteus penneri ATCC 35198] gi|225201077|gb|EEG83431.1| hypothetical protein PROPEN_04195 [Proteus penneri ATCC 35198] Length = 307 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 82/254 (32%), Gaps = 22/254 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ A+++D + ++ + Sbjct: 34 GDKIMVCLSGGKDSYTLLSILMNLQKSAPI-NFSLIAVNLD-QKQPG---FPEHILPEYL 88 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + +V + R ++ A + AT I H DD Sbjct: 89 NELGVEYKIVEENTYGIVKDIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ KGM M D D + RP R +DI F + Sbjct: 149 ILETLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYAREKDIERFAQAKQFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F+ + V + + Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTQLFDFVNIKH 262 Query: 248 SIIAISQDILNIDS 261 I+ L D Sbjct: 263 GDEVINGGDLAFDK 276 >gi|218667600|ref|YP_002425839.1| PP-loop family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519813|gb|ACK80399.1| PP-loop family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 260 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 16/185 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71 R + +L+ +SGG DS+ LL L ++ + +VD + D + + Sbjct: 29 FRMIQPGDRVLLGLSGGKDSLTLLHLLRAMQRQSPVP-FDLAVATVD----PMSPDYDPQ 83 Query: 72 YVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + + + + + R ++ A+ ++ Sbjct: 84 PLVPYLRELGIPYFLERQNIYERAQKHLLRPSYCSFCARMRRGVLYRCARREGYQVLALG 143 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E+ +M + + + + + +L + RP + CR R F ++ Sbjct: 144 QHLDDFAESFFMSMFYNGELR----TMKAHYRVREGDLRVIRPLVYCRERQTRQFATEQA 199 Query: 186 ISWCE 190 + Sbjct: 200 LPVIH 204 >gi|237734571|ref|ZP_04565052.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382391|gb|EEO32482.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 258 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 20/223 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDV 76 + V VSGG DSM LL L S+ + K + ++ + ++ + Sbjct: 35 GDKVCVGVSGGKDSMLLLYCL-SLYKKFATVKFDVIGVHIEMGFPNMDFSEADA-----F 88 Query: 77 CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 C + I ++ + + + + AL+ + AK + AH Sbjct: 89 CKKNGIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYRCNKVAFAHHG 148 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET++M G + L + RP + DI S + + ++ Sbjct: 149 DDAVETLFMNMIYG----GKIATFTPKMYLTRTEMNFIRPLVYAYESDIVSAVEEAHVPI 204 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 D +R + + D+ L K L + N Sbjct: 205 VASTCPADKHTKREEFKHLLNDLYLKYPQAKSNLLTSLTNEEN 247 >gi|254247003|ref|ZP_04940324.1| PP-loop [Burkholderia cenocepacia PC184] gi|124871779|gb|EAY63495.1| PP-loop [Burkholderia cenocepacia PC184] Length = 331 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 42 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +R+ D F L Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 270 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301 >gi|78355291|ref|YP_386740.1| hypothetical protein Dde_0244 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217696|gb|ABB37045.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 250 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 15/185 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + VAVSGG DS LL L F + A+ V+ + + + Sbjct: 27 LYPGARVGVAVSGGMDSWVLLQVLLYRQRIVPF-HFEIMALHVNPGFDPQSH---APLLE 82 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAHTF 128 R +A V + R + + N T + H Sbjct: 83 WLHRNGVAGHVELTDHGPRAHSPENRRNSPCFYCAMLRRKHLFDLCGRYNLTHLAFGHNA 142 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD + T YM +GMG+ + L + RP + + I + + Sbjct: 143 DDLVATFYMNLYEGGRVEGMGMC----EDFFGGMLKVIRPLMLVEKSVIHRAVRAWELPL 198 Query: 189 CEDPS 193 +P Sbjct: 199 WTNPC 203 >gi|166030998|ref|ZP_02233827.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC 27755] gi|166029265|gb|EDR48022.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC 27755] Length = 390 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 27/194 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM L+ L L + + ++ A + + + D Sbjct: 142 GDKIAVCISGGKDSM-LMAKLFQELRKHGKANFELVFLVMNPGY--NADNW-KIIQDNAK 197 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I +V + R + HAK + I H +DD +ET Sbjct: 198 VLGIPLTVFESNIFDTVADIDKNPCYLCARMRRGYLYSHAKELGCNKIALGHHYDDVIET 257 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188 + M GM SG +T++ L + + RP + DI + +++ Sbjct: 258 ILM---------GMLYSGKIETMMPKLHSTNFEGMELIRPMYLIKEADIIGWRDYNQLNF 308 Query: 189 CEDPSNTDDRFERV 202 + RF Sbjct: 309 IQCAC----RFTEN 318 >gi|330818524|ref|YP_004362229.1| PP-loop family protein [Burkholderia gladioli BSR3] gi|327370917|gb|AEA62273.1| PP-loop family protein [Burkholderia gladioli BSR3] Length = 329 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 32/282 (11%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ + A++ Sbjct: 41 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFEIVAVN 99 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + ++ + + + + + R + Sbjct: 100 LD-QKQPG---FPEHVLPEYLRQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 155 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 156 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 211 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 212 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 269 Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261 V + + + IA +D D+ Sbjct: 270 SAVVPSHLMDTTLFPFKDLRATGVADPAGDIAFDEDPCGTDA 311 >gi|325142448|gb|EGC64852.1| PP-loop family protein [Neisseria meningitidis 961-5945] gi|325198416|gb|ADY93872.1| PP-loop family protein [Neisseria meningitidis G2136] Length = 319 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280 >gi|309379188|emb|CBX22145.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 319 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280 >gi|295677983|ref|YP_003606507.1| PP-loop domain protein [Burkholderia sp. CCGE1002] gi|295437826|gb|ADG16996.1| PP-loop domain protein [Burkholderia sp. CCGE1002] Length = 333 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 65 GDKVMVCLSGGKDSYAMLDILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 119 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L I + + + + R ++ A + AT I H DD Sbjct: 120 TQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 179 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 180 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 234 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ VRD + K+F + NA++ ++P +L H Sbjct: 235 -PCNLCGSQPNLKRAEMKALVRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 283 >gi|289596443|ref|YP_003483139.1| PP-loop domain protein [Aciduliprofundum boonei T469] gi|289534230|gb|ADD08577.1| PP-loop domain protein [Aciduliprofundum boonei T469] Length = 288 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 21/201 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F IE V ++ I +A+SGG DSM LL ++R + + ++ Sbjct: 27 LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 76 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112 + E + + V + C + V + + + G+ R+ RY L+++ Sbjct: 77 GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIENVRRKPCSACGTVKRY-LMNK 134 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + A+++ T H DD L+ + + + + + + I RP Sbjct: 135 VPRENGASVVTTGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSEHPKMLPKI-RPLYLL 193 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++I + N+ + D Sbjct: 194 GDKEIGMYAKLNNVPYSSDKC 214 >gi|254166581|ref|ZP_04873435.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469] gi|197624191|gb|EDY36752.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469] Length = 272 Score = 93.8 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 21/201 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F IE V ++ I +A+SGG DSM LL ++R + + ++ Sbjct: 11 LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112 + E + + V + C + V + + + G+ R+ RY L+++ Sbjct: 61 GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIENVRRKPCSACGTVKRY-LMNK 118 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + A+++ T H DD L+ + + + + + + I RP Sbjct: 119 VPRENGASVVTTGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSEHPKMLPKI-RPLYLL 177 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++I + N+ + D Sbjct: 178 GDKEIGMYAKLNNVPYSSDKC 198 >gi|241758779|ref|ZP_04756892.1| C32 tRNA thiolase [Neisseria flavescens SK114] gi|241320987|gb|EER57200.1| C32 tRNA thiolase [Neisseria flavescens SK114] Length = 319 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|240128505|ref|ZP_04741166.1| hypothetical protein NgonS_07716 [Neisseria gonorrhoeae SK-93-1035] gi|268686894|ref|ZP_06153756.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|268627178|gb|EEZ59578.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] Length = 319 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 30 NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86 Query: 74 SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I + +V + + R ++ AK + T I H Sbjct: 87 -TYLESIGIPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 DD L T+++ G L M ++ D I RP + +D+ + + Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R + +RD D F L+ V + +A Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258 Query: 243 TVHMRSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280 >gi|312795000|ref|YP_004027922.1| tRNA s2C32 biosynthesis protein TtcA [Burkholderia rhizoxinica HKI 454] gi|312166775|emb|CBW73778.1| tRNA s2C32 biosynthesis protein TtcA [Burkholderia rhizoxinica HKI 454] Length = 307 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 84/261 (32%), Gaps = 25/261 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V VSGG DS LL L + +R+ A+++D + +V + Sbjct: 45 AGDKVMVCVSGGKDSYALLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPAHVLPEY 99 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + V + + + R ++ A + AT I H D Sbjct: 100 LAARGVPFHVENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 159 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188 D L+TV + G L GM + D I RP + D+ + R Sbjct: 160 DILQTVLLNMF-----YGGKLKGMPPKLQSDDGKHIVIRPLAYVKEHDLEKYAQLREFPI 214 Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTV 244 P N +R ++ +++ D F L V ++ + + + + Sbjct: 215 I--PCNLCGSQPNLKRAEMKMLLQEWDKRFPGRVDNMFSALADVVPSHLMDHRLFPFAEL 272 Query: 245 HMRSIIAISQDILNIDSTLLF 265 + DI D Sbjct: 273 RATGVADPHGDIAFDDEPCAM 293 >gi|218188588|gb|EEC71015.1| hypothetical protein OsI_02708 [Oryza sativa Indica Group] Length = 361 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 21/212 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L + + R + +SVD + D + V Sbjct: 60 NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NHRHKYCLDLFLLSVDEGITGYRDDSLETV 118 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+K+ + R + A + I Sbjct: 119 KRNEIQYGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SF 180 +T H DD ETV + R + + + T D + +PF ++I + Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 236 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +I C N + R R F++D++ Sbjct: 237 YAISHIFSCIYSPNA---Y-RGFAREFIKDLE 264 >gi|227326371|ref|ZP_03830395.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTMFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R ++ +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284 >gi|218709460|ref|YP_002417081.1| hypothetical protein VS_1469 [Vibrio splendidus LGP32] gi|218322479|emb|CAV18636.1| Hypothetical protein VS_1469 [Vibrio splendidus LGP32] Length = 301 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L + R IKF ++V+ L + ++ Sbjct: 36 NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 90 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 91 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 150 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR D+ + + Sbjct: 151 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIQYAEHLD 206 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ + D D K F+ ++ + +A Sbjct: 207 FPII--PCNLCGSQENLQRQNIKAMLIDWDKQTPGRVEKIFKSIQNVSPSQLAD 258 >gi|198283257|ref|YP_002219578.1| PP-loop domain-containing protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247778|gb|ACH83371.1| PP-loop domain protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 256 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 16/185 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71 R + +L+ +SGG DS+ LL L ++ + +VD + D + + Sbjct: 25 FRMIQPGDRVLLGLSGGKDSLTLLHLLRAMQRQSPVP-FDLAVATVD----PMSPDYDPQ 79 Query: 72 YVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + + + + + R ++ A+ ++ Sbjct: 80 PLVPYLRELGIPYFLERQNIYERAQKHLLRPSYCSFCARMRRGVLYRCARREGYQVLALG 139 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E+ +M + + + + + +L + RP + CR R F ++ Sbjct: 140 QHLDDFAESFFMSMFYNGELR----TMKAHYRVREGDLRVIRPLVYCRERQTRQFATEQA 195 Query: 186 ISWCE 190 + Sbjct: 196 LPVIH 200 >gi|291541683|emb|CBL14793.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus bromii L2-63] Length = 382 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 23/229 (10%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D +D + Sbjct: 133 KLVEPNDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYSVENRDVIE-- 189 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 RL I +V R + + AK + I H +D Sbjct: 190 -SNARRLNIPITVFETDIFNSVYNVDKYPCYLCARMRRGYLYKKAKQLGCNKIALGHHYD 248 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + Y+ + + RP R +I+ + +++ Sbjct: 249 DVIETILMGMLYGGQVQTM--MPKLHSTNYE-GMELIRPLYLVREAEIKHWRDYNKLNFI 305 Query: 190 EDPS-----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N++ +R +++ + ++ ++ F + Sbjct: 306 QCACRFTDTCTTCSPNSNTGSKRQEIKQLIANLKKINPQIESNIFHSVE 354 >gi|209695076|ref|YP_002263005.1| hypothetical protein VSAL_I1573 [Aliivibrio salmonicida LFI1238] gi|254789866|sp|B6ELU0|TTCA_ALISL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|208009028|emb|CAQ79258.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238] Length = 307 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 42/267 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 I+V +SGG DS +L L + + I F I+V+ H L E Sbjct: 36 GDRIMVCLSGGKDSFTMLDILIGL---KKSAPISFDLIAVNLDQKQPGFPTHILPE---- 88 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121 L + + VV + R ++ AK + AT Sbjct: 89 -------YLDTLGVEYRVVEEDTYSIVQDKLIEGKTTCSLCSRLRRGILYRTAKELGATK 141 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180 I H DD LET+++ G L GM ++ D + RP CR +DI + Sbjct: 142 IALGHHRDDILETMFLNMF-----YGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKY 196 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + P N +R +++ + D F ++ V + +A Sbjct: 197 ADLADYPII--PCNLCGSQPNMQRQNIKQMLNTWDTQFPGRIESMFTAMQNVVPSHLADF 254 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 R I+ + D + Sbjct: 255 NTFDFKSINRDSGVINGGDIGFDKEEM 281 >gi|325132533|gb|EGC55226.1| PP-loop family protein [Neisseria meningitidis M6190] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGAHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQTLKHGGDLAFDSEKM 280 >gi|218263812|ref|ZP_03477788.1| hypothetical protein PRABACTJOHN_03478 [Parabacteroides johnsonii DSM 18315] gi|218222485|gb|EEC95135.1| hypothetical protein PRABACTJOHN_03478 [Parabacteroides johnsonii DSM 18315] Length = 251 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 18/194 (9%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F E V+ + +V IL+ +SGG DS+ L+ L S + + Sbjct: 10 LFRKVEEKVKKAIFEYGLIVDGDRILIGLSGGKDSLALVDLLGR-RSKIFRPRFEVVVTH 68 Query: 58 V---DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALIS 111 + + R ++ Y+ + V ++ + R + Sbjct: 69 IVMSNIPYRS----DISYLKSRTDEYGLPFFVHETSFDASTDTRKSPCFLCSWTRRKALF 124 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + AK I H DD LET+ M +G + + ++ I RP Sbjct: 125 DIAKKHGCNKIALGHHQDDILETLLMNMI----HQGAIGTMPPRLKMDKFDMEIIRPMCL 180 Query: 172 CRREDIRSFLLQRN 185 +D+ R Sbjct: 181 VEEKDLTRIAAWRG 194 >gi|159115787|ref|XP_001708116.1| ATPase of the PP-loop superfamily implicated in cell cycle control, putative [Giardia lamblia ATCC 50803] gi|157436225|gb|EDO80442.1| ATPase of the PP-loop superfamily implicated in cell cycle control, putative [Giardia lamblia ATCC 50803] Length = 351 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 102/302 (33%), Gaps = 57/302 (18%) Query: 2 FLSPIE-SVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSA 55 FL IE V+ V SLV P I + VSGG DS +L LH++ + ++F Sbjct: 27 FLRAIEDEVQRTVEMHSLVRPGESIALGVSGGKDSSVMLHILHTLRLRCQDVYDGVRFVM 86 Query: 56 ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------------------- 96 ++V+ ++ + + + + + +V ++ +T Sbjct: 87 VAVNEGIQGYRGESLACLQRLHKKYPYELEIVGFEERYGRTLDQLVNTVNGNSCTDTFAP 146 Query: 97 ---------------------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 + R +S + T + T H DD ETV Sbjct: 147 LKADLEDVNDTGRPQPTAKTATACSFCGILRRNSLSYGSLQTQCTKVATGHNADDNAETV 206 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPS 193 + R A K + C L DLN ++R P + DI + + + + Sbjct: 207 LLNLIRGDAAKLV----RCSEPLSDLNQGVARIKPLCNIAQRDIVIYAHLQRLDYFSVEC 262 Query: 194 NTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 R + R F+ R A ++ + LR+K + L +L +S Sbjct: 263 PYATTALRGKPRSFLTNLCTRPAYSDAALRIIRSTRKLRLKTTHETQKLTSLHLCPSCQS 322 Query: 249 II 250 + Sbjct: 323 PV 324 >gi|261400644|ref|ZP_05986769.1| PP-loop family protein [Neisseria lactamica ATCC 23970] gi|269209551|gb|EEZ76006.1| PP-loop family protein [Neisseria lactamica ATCC 23970] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILLRLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQTLKHGGDLAFDSEKM 280 >gi|261380133|ref|ZP_05984706.1| PP-loop family protein [Neisseria subflava NJ9703] gi|284796970|gb|EFC52317.1| PP-loop family protein [Neisseria subflava NJ9703] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|261379094|ref|ZP_05983667.1| PP-loop family protein [Neisseria cinerea ATCC 14685] gi|269144475|gb|EEZ70893.1| PP-loop family protein [Neisseria cinerea ATCC 14685] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|254672452|emb|CBA05859.1| conserved hypothetical protein [Neisseria meningitidis alpha275] gi|325128312|gb|EGC51196.1| PP-loop family protein [Neisseria meningitidis N1568] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280 >gi|126465307|ref|YP_001040416.1| PP-loop domain-containing protein [Staphylothermus marinus F1] gi|126014130|gb|ABN69508.1| PP-loop domain protein [Staphylothermus marinus F1] Length = 310 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+ +SGG DS+ L L + F K ++ + E +K V V + Sbjct: 33 RGDRVLLGLSGGKDSVVLAYILSKLRETIGF---KLYLTHLNLGIGEYSKKTVEIVRKIS 89 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHT 127 ++ ++ + A + R L++ A + A I T H Sbjct: 90 EKINAPLIILDLREILSIGIPELALKTRRPPCSVCGVVKRYLLNALAVELKADSIATGHN 149 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQR 184 DD + T + R++ + + + ++ +P EDI+ + Sbjct: 150 LDDMV-TFIL---REFLVQNLEQIPKLAPRIEGAEDYLATKIKPLYETYEEDIKKYAELN 205 Query: 185 NISWCE 190 NI + E Sbjct: 206 NIDYVE 211 >gi|258405487|ref|YP_003198229.1| PP-loop domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797714|gb|ACV68651.1| PP-loop domain protein [Desulfohalobium retbaense DSM 5692] Length = 299 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 24/196 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ R F ILVAVSGG DS+ LL L + + VD + Sbjct: 36 RAIKEERLFT----PEDRILVAVSGGKDSLALLWQLRDL-------GYNVHGLHVDLGIP 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114 +++ ++ C + I +VS + + + + + + + +A Sbjct: 85 DSSDRAKTAIAAFCDQQAIPLHIVSTEEAGVAIPDLAERIDQPVCSFCGKIKRHFFNTYA 144 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCR 173 ++ T H DD++ ++ + K L+ + D +P R Sbjct: 145 VEHGFNVLATGHNLDDEVSRLFANTL---GWKTDYLATQGPLLPADNGFARKVKPLYRHS 201 Query: 174 REDIRSFLLQRNISWC 189 + +F + I Sbjct: 202 EFETAAFCFLKGIEHV 217 >gi|260440230|ref|ZP_05794046.1| UPF0021 protein [Neisseria gonorrhoeae DGI2] gi|291043526|ref|ZP_06569242.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae DGI2] gi|291011989|gb|EFE03978.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae DGI2] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 30 NMIEPGDKIMVCLSGGKDSYALLDILRRLQATAPI-DFELVAVNLD-QKQPGFPEEVLP- 86 Query: 74 SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +V + + R ++ AK + T I H Sbjct: 87 -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 DD L T+++ G L M ++ D I RP + +D+ + + Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R + +RD D F L+ V + +A Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258 Query: 243 TVHMRSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280 >gi|238919821|ref|YP_002933336.1| C32 tRNA thiolase [Edwardsiella ictaluri 93-146] gi|238869390|gb|ACR69101.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 332 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 19/267 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + ++V +SGG DS +L L ++ A+++D + Sbjct: 49 EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-DFTLVAVNLD-QKQPGF 105 Query: 67 KDEV--RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + V Y+ + RI +V K + +T + R ++ A ++ Sbjct: 106 PETVLPAYLENQGIEYRIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTANELHCN 164 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD LET+++ KGM M D D + RP CR +DI F Sbjct: 165 KIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 220 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + P N +R ++ +RD D F+ ++ V + +A Sbjct: 221 AAAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNVVPSHLADG 278 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ I L D ++ Sbjct: 279 ALFDFKGLLQGGEIIDGGDLAFDRQII 305 >gi|121634977|ref|YP_975222.1| hypothetical protein NMC1192 [Neisseria meningitidis FAM18] gi|205830605|sp|A1KU93|TTCA_NEIMF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120866683|emb|CAM10435.1| hypothetical protein NMC1192 [Neisseria meningitidis FAM18] gi|325138307|gb|EGC60876.1| PP-loop family protein [Neisseria meningitidis ES14902] Length = 319 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQTLKHGGDLAFDSEKM 280 >gi|84385469|ref|ZP_00988500.1| putative ATPase [Vibrio splendidus 12B01] gi|84379449|gb|EAP96301.1| putative ATPase [Vibrio splendidus 12B01] Length = 297 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L + R IKF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIKYAEHKE 202 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ + D D K F+ ++ + +A Sbjct: 203 FPII--PCNLCGSQENLQRQNIKAMLIDWDKQTPGRVEKVFKSIQNVSPSQLAD 254 >gi|319410531|emb|CBY90896.1| putative ATPase [Neisseria meningitidis WUE 2594] Length = 319 Score = 93.4 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|224023947|ref|ZP_03642313.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM 18228] gi|224017169|gb|EEF75181.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM 18228] Length = 252 Score = 93.4 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 26/227 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEV 70 R + ILV +SGG DS+ L+ L + S K A V + + + Sbjct: 26 RLIEEGDRILVGLSGGKDSLA-LLELLARRSRIYKPKFSVVAAHVVMKN--IAYESDQ-- 80 Query: 71 RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ + L + + + ++ + R + AK I H Sbjct: 81 TYLREYAESLGVPYVCYETEFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL------ 181 DD LET+ M +G + ++ ++ I RP D++ Sbjct: 141 MDDILETLLMNMT----FQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLKEMAALRGFR 196 Query: 182 -LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +N + +D +D + V + ++ A Y +++ Sbjct: 197 KQVKNCPYEKDSHRSDMK----EVLARLEAMNPEARYSLWGSMSNIQ 239 >gi|255262373|ref|ZP_05341715.1| PP-loop domain containing protein [Thalassiobium sp. R2A62] gi|255104708|gb|EET47382.1| PP-loop domain containing protein [Thalassiobium sp. R2A62] Length = 290 Score = 93.4 bits (231), Expect = 7e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 19/258 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 V A LV +SGG DS LL L+ + R + A ++D + Sbjct: 42 VDQKSRNAKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLVACNLD---QGQPGFPATV 97 Query: 73 VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + ++ + H + V A R A + A+ + ++ Sbjct: 98 LPEFLEKMGVPHRIEYQDTYSVVMDKVPEGRTYCALCSRLRRANLYRIAREEGCSAVVLG 157 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQR 184 H DD LET +M LS M ++ D L++ RP D +F Sbjct: 158 HHRDDMLETFFMNLFHGGR-----LSTMPPKLVNDEGDLFLFRPLAHVAEADCEAFARAM 212 Query: 185 NISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPKYL 242 N D + D +R +V++ + + ++ + F+ + + ++ + + ++ Sbjct: 213 NYPIIPCDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMFRALMNARPSHLLDPKLFDFV 272 Query: 243 TVHMRSIIAISQDILNID 260 + S S DI ++ Sbjct: 273 GLQTSSDADNSTDIPDLS 290 >gi|325130372|gb|EGC53138.1| PP-loop family protein [Neisseria meningitidis OX99.30304] Length = 319 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|261252977|ref|ZP_05945550.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP 102891] gi|260936368|gb|EEX92357.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP 102891] Length = 297 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 D L I + +V R + A+ I AT + Sbjct: 87 LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|187927170|ref|YP_001897657.1| C32 tRNA thiolase [Ralstonia pickettii 12J] gi|309780128|ref|ZP_07674880.1| MesJ protein [Ralstonia sp. 5_7_47FAA] gi|254790135|sp|B2UD46|TTCA_RALPJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|187724060|gb|ACD25225.1| PP-loop domain protein [Ralstonia pickettii 12J] gi|308921160|gb|EFP66805.1| MesJ protein [Ralstonia sp. 5_7_47FAA] Length = 315 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 22/247 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS +L L ++ R+ K A+++D + +EV + +L Sbjct: 34 ILVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEEVLP--NYLKKLG 89 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + R +I AK + A I H DD + T Sbjct: 90 VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ K M + D I RP C +DI S+ P Sbjct: 150 FFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIASYARAMEFPII--PC 202 Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N + +R +V+ + + + F LR V + +A + Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFASLRNVVPSHLADTDLFDFNGLTTGLA 262 Query: 251 AISQDIL 257 I +D L Sbjct: 263 KIGEDAL 269 >gi|261211593|ref|ZP_05925880.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341] gi|260838943|gb|EEX65575.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341] Length = 310 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FELIAVNLD-QKQPG---FPAHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R+ Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRSYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V+ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKLMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267 Query: 247 RSIIAISQDILNIDST 262 ++ I+ + D Sbjct: 268 KNSGIINGGDIGFDKE 283 >gi|298368800|ref|ZP_06980118.1| PP-loop family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282803|gb|EFI24290.1| PP-loop family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADPELFDFVGLERGQALKHGGDLAFDSEKM 280 >gi|240115957|ref|ZP_04730019.1| UPF0021 protein [Neisseria gonorrhoeae PID18] gi|268601622|ref|ZP_06135789.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268585753|gb|EEZ50429.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 30 NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86 Query: 74 SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +V + + R ++ AK + T I H Sbjct: 87 -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 DD L T+++ G L M ++ D I RP + +D+ + + Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R + +RD D F L+ V + +A Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258 Query: 243 TVHMRSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280 >gi|194098942|ref|YP_002002007.1| UPF0021 protein [Neisseria gonorrhoeae NCCP11945] gi|239999222|ref|ZP_04719146.1| UPF0021 protein [Neisseria gonorrhoeae 35/02] gi|240013870|ref|ZP_04720783.1| UPF0021 protein [Neisseria gonorrhoeae DGI18] gi|240016313|ref|ZP_04722853.1| UPF0021 protein [Neisseria gonorrhoeae FA6140] gi|240113197|ref|ZP_04727687.1| UPF0021 protein [Neisseria gonorrhoeae MS11] gi|240121440|ref|ZP_04734402.1| UPF0021 protein [Neisseria gonorrhoeae PID24-1] gi|240125992|ref|ZP_04738878.1| UPF0021 protein [Neisseria gonorrhoeae SK-92-679] gi|254493986|ref|ZP_05107157.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268595046|ref|ZP_06129213.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae 35/02] gi|268599277|ref|ZP_06133444.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268684584|ref|ZP_06151446.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|293398841|ref|ZP_06643006.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae F62] gi|254790133|sp|B4RMM2|TTCA_NEIG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|193934232|gb|ACF30056.1| UPF0021 protein [Neisseria gonorrhoeae NCCP11945] gi|226513026|gb|EEH62371.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548435|gb|EEZ43853.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae 35/02] gi|268583408|gb|EEZ48084.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268624868|gb|EEZ57268.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|291610255|gb|EFF39365.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae F62] gi|317164507|gb|ADV08048.1| UPF0021 protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 30 NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86 Query: 74 SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +V + + R ++ AK + T I H Sbjct: 87 -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 DD L T+++ G L M ++ D I RP + +D+ + + Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R + +RD D F L+ V + +A Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258 Query: 243 TVHMRSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280 >gi|59800981|ref|YP_207693.1| hypothetical protein NGO0547 [Neisseria gonorrhoeae FA 1090] gi|240080432|ref|ZP_04724975.1| hypothetical protein NgonF_03847 [Neisseria gonorrhoeae FA19] gi|240118254|ref|ZP_04732316.1| hypothetical protein NgonPID_07301 [Neisseria gonorrhoeae PID1] gi|240123802|ref|ZP_04736758.1| hypothetical protein NgonP_07664 [Neisseria gonorrhoeae PID332] gi|268596574|ref|ZP_06130741.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae FA19] gi|268603963|ref|ZP_06138130.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682426|ref|ZP_06149288.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|75356195|sp|Q5F956|TTCA_NEIG1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|59717876|gb|AAW89281.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|268550362|gb|EEZ45381.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria gonorrhoeae FA19] gi|268588094|gb|EEZ52770.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622710|gb|EEZ55110.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ P I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 30 NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86 Query: 74 SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + +V + + R ++ AK + T I H Sbjct: 87 -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 DD L T+++ G L M ++ D I RP + +D+ + + Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R + +RD D F L+ V + +A Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258 Query: 243 TVHMRSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280 >gi|289522366|ref|ZP_06439220.1| Sua5/YciO/YrdC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504202|gb|EFD25366.1| Sua5/YciO/YrdC family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 238 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 15/218 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77 ++LV +SGG DS LLIAL + S + A+ VD T + + + C Sbjct: 27 GDNVLVGLSGGKDSSLLLIALKHLQR-VSPIRFNIEAMIVD----PTGGQFDPAGLKEFC 81 Query: 78 SRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + + + + + R ++S AK I H D Sbjct: 82 ESLDVPFTHYAYPIFEIIKIRREKSPCSFCANMRRGILSGIAKDRGFRKIALGHHLTDAT 141 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+ + G + T W+ RP + E + S + ++ Sbjct: 142 VTLMLNIF----FSGRLHTLQPKTWQSRTQTWVIRPLIFLPEETLISAASEMDLPERGPK 197 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 D +R R+ +++I A + + LR + Sbjct: 198 CPYGDDTKRKRINEILKNILEEAPQGEYSTLRALRKTL 235 >gi|220905422|ref|YP_002480734.1| PP-loop domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869721|gb|ACL50056.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 264 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 15/181 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + VA SGG DS LL L + + + A+ ++ + + Sbjct: 27 LWPGCRVGVAASGGVDSFVLLKTLK-IRQGIVPFRFEIMALHLNPGFDGQSH---AALLP 82 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTF 128 + I V + R A R + E T + H Sbjct: 83 WLAAHGIPAHVEVTSHGPDAHSEKNLRRSACFRCAWLRRKRLFELCSQYGLTHLALGHNA 142 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET +M R+ GM + + +D L + RP + ++ IR Q + Sbjct: 143 EDLVETFFMNICRNGRVDGMSM----NEPFFDGKLRLIRPLMLVEKKYIRQAARQWGLPI 198 Query: 189 C 189 Sbjct: 199 W 199 >gi|312881636|ref|ZP_07741414.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309370699|gb|EFP98173.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 297 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT + Sbjct: 87 LPEYFESLDIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ ++ + Sbjct: 147 HHMDDMVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLITYAEHKQ 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|319638342|ref|ZP_07993105.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria mucosa C102] gi|317400615|gb|EFV81273.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria mucosa C102] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQNLKHGGDLAFDSEKM 280 >gi|308389377|gb|ADO31697.1| hypothetical protein NMBB_1381 [Neisseria meningitidis alpha710] Length = 319 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQTLKHGGDLAFDSEKM 280 >gi|145337616|ref|NP_177744.2| ATP binding [Arabidopsis thaliana] gi|332197684|gb|AEE35805.1| 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis thaliana] Length = 332 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 14/199 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + + SGG DS L L + + R + +S+D Sbjct: 20 FEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSEL-NRRHSYGLDLFLLSIDEG 78 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 79 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 138 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 139 DRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 196 Query: 171 RCRREDIRSFLLQRNISWC 189 ++I + + + + Sbjct: 197 YTYEKEIVMYAYFKKLDYF 215 >gi|290462133|gb|ADD24114.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Lepeophtheirus salmonis] Length = 413 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 21/231 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISV 58 F +E++ F + +LV +SGG DS+ LL L + + + A++V Sbjct: 156 FKPFLEAMEQF-SMIKNGDRVLVCLSGGKDSLSLLHTLRQYRFYAKETNGIEFDLGAVTV 214 Query: 59 DHCLRETAKD-EVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISE 112 D + + R + L I + ++++ T + + + I Sbjct: 215 D----PGSDAYDPRPLIPYLEELDIHYLYEKQNIMAAALEADCTSICSYCSRMKRGRIYA 270 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ DD +E+ M + + + + + + +L + RPF+ Sbjct: 271 AARKEKYNVLAMGQHLDDLVESFIMSIFHNGRMR----TMKANYSVKEKDLRVIRPFVYV 326 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 R +R F + + P N FE + R + + L A L + Sbjct: 327 RESKLREFAQTKKLPII--PENCPACFESPKERHRTKQL-LAAQELLFPRL 374 >gi|256752672|ref|ZP_05493523.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748434|gb|EEU61487.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 298 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 24/214 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ + + L ++VA+SGG DS+ L + + I Sbjct: 30 FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82 Query: 62 LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117 + E + V C I +V+ K + A R+ R I K Sbjct: 83 IEENNFSSQSREVVESFCKENDIPLEIVNLKEKFGKGIPDVAKRQDRICAICGVTKRHLM 142 Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169 A + T HT DD + + R D G + + + +P Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGFARK---IKPL 199 Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 E+I +F NI P + + ++ R Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233 >gi|167038552|ref|YP_001666130.1| PP-loop domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116948|ref|YP_004187107.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857386|gb|ABY95794.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930039|gb|ADV80724.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 298 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 24/214 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ + + L ++VA+SGG DS+ L + + I Sbjct: 30 FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82 Query: 62 LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117 + E + V C I +V+ K + A R+ R I K Sbjct: 83 IEENNFSSQSREVVESFCKENDIPLEIVNLKEKFGKGIPDVAKRQDRICAICGVTKRHLM 142 Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169 A + T HT DD + + R D G + + + +P Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGFARK---IKPL 199 Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 E+I +F NI P + + ++ R Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233 >gi|325266520|ref|ZP_08133197.1| PP-loop family protein [Kingella denitrificans ATCC 33394] gi|324981963|gb|EGC17598.1| PP-loop family protein [Kingella denitrificans ATCC 33394] Length = 323 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 25/273 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ F + + I+V +SGG DS LL L + + + A+++D + Sbjct: 32 DAINDF-QMIENGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG- 87 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +V + + + + +V + + R ++ AK + Sbjct: 88 --FPEHVLPEYLTSIGVPFKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 145 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 146 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 200 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + ++D D F L+ V + + Sbjct: 201 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHL 258 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 A R L DS + + Sbjct: 259 ADTELFDFAGLQRGQELKHGGDLAFDSETVSFA 291 >gi|330445966|ref|ZP_08309618.1| PP-loop family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490157|dbj|GAA04115.1| PP-loop family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + L I + +V + R + A+ I AT I Sbjct: 87 LPEYFASLNIPYYIVDKDTYSVVKEKIEEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLAYCREKDLIKYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|91223706|ref|ZP_01258970.1| putative ATPase [Vibrio alginolyticus 12G01] gi|254229558|ref|ZP_04922971.1| pyridoxamine 5'-phosphate oxidase [Vibrio sp. Ex25] gi|262394248|ref|YP_003286102.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. Ex25] gi|91191198|gb|EAS77463.1| putative ATPase [Vibrio alginolyticus 12G01] gi|151937931|gb|EDN56776.1| pyridoxamine 5'-phosphate oxidase [Vibrio sp. Ex25] gi|262337842|gb|ACY51637.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. Ex25] Length = 297 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT + Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + ++ Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|28898307|ref|NP_797912.1| C32 tRNA thiolase [Vibrio parahaemolyticus RIMD 2210633] gi|260361897|ref|ZP_05774904.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus K5030] gi|260878644|ref|ZP_05890999.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AN-5034] gi|260894889|ref|ZP_05903385.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus Peru-466] gi|260903361|ref|ZP_05911756.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ4037] gi|81727716|sp|Q87PG9|TTCA_VIBPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|28806524|dbj|BAC59796.1| putative ATPase [Vibrio parahaemolyticus RIMD 2210633] gi|308087852|gb|EFO37547.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus Peru-466] gi|308091172|gb|EFO40867.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AN-5034] gi|308108216|gb|EFO45756.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ4037] gi|308114527|gb|EFO52067.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus K5030] gi|328473686|gb|EGF44521.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio parahaemolyticus 10329] Length = 297 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT + Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + ++ Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|291521355|emb|CBK79648.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Coprococcus catus GD/7] Length = 382 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 14/194 (7%) Query: 1 MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 +F +++ + L+ P I V +SGG DSM + + F + + +D Sbjct: 121 LFSKFAKAINTY--DLIQPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMD 177 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115 E + + + + + + +V + Q R + AK Sbjct: 178 PGYSEVNR---KLIENNARIMGVPITVFESQIFEAVYDIQKSPCYLCARMRRGHLYNKAK 234 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + I H +DD +ET+ M + M + ++ + + RP R E Sbjct: 235 ELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSSNFE-GMELIRPMYLIREE 291 Query: 176 DIRSFLLQRNISWC 189 DI+ + + + Sbjct: 292 DIKQWRDLNGLHFI 305 >gi|118594050|ref|ZP_01551397.1| hypothetical protein MB2181_00240 [Methylophilales bacterium HTCC2181] gi|118439828|gb|EAV46455.1| hypothetical protein MB2181_00240 [Methylophilales bacterium HTCC2181] Length = 286 Score = 93.0 bits (230), Expect = 9e-17, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS LL L ++ + A+++D + ++V + Sbjct: 38 GDKVMVCVSGGKDSFTLLTILLALQKKAPI-NFEVIAMNLD-QKQPGFPEDVLP--NYFK 93 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I +V+ + R +I + AK I A I H +D Sbjct: 94 KYGIPFEIVNADTYSIVKEKIPEGKTTCSLCSRLRRGIIYKKAKAIGANKIALGHHKNDI 153 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ K M + D D + I RP C +DI ++ N Sbjct: 154 VETFFLNMFHGSKLKAMPPKLLSD----DKDNIIIRPLAFCEEKDIMTYANTMNFPII-- 207 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + ER +++ + D D F + + +A Sbjct: 208 PCNLCGSQENLERKKIKAMLFDWDKANPGRVNNIFGAISNIELSHLAD 255 >gi|261821855|ref|YP_003259961.1| C32 tRNA thiolase [Pectobacterium wasabiae WPP163] gi|261605868|gb|ACX88354.1| PP-loop domain protein [Pectobacterium wasabiae WPP163] Length = 311 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R ++ +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRHPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 256 DHTLFDFKNIRHGSEVVDGGDLAFDREEL 284 >gi|325958096|ref|YP_004289562.1| hypothetical protein Metbo_0338 [Methanobacterium sp. AL-21] gi|325329528|gb|ADZ08590.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21] Length = 283 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 13/208 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++VA+SGG DS+ L L ++ + F A+S+D + + V C L Sbjct: 32 VVVALSGGKDSVLTLHILADLMGELEF---DLVAVSIDEGVAGYRSEGVEAARLNCESLG 88 Query: 82 IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I S+K+ R L+++ + + A + T H DD++ Sbjct: 89 IKLVEGSFKDEFGFKLDDLHGMYQSSCIPCGVFRRQLLNKISHQLGADKLATGHNLDDEI 148 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ++ M + + D I D+ I +P + +D+ + + NI Sbjct: 149 QSFLMSLAKAEIRRFYKFGPKLDKIHPDMVPRI-KPLWKTHEKDVGIWAVLNNIEVHFAE 207 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKM 220 R +++ ++ ++ K+ Sbjct: 208 CPYSATSLRSKIKGYLNQLEEKRPGTKL 235 >gi|323499029|ref|ZP_08104009.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis DSM 21326] gi|323315864|gb|EGA68895.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis DSM 21326] Length = 297 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 D L I + +V R + A+ I AT + Sbjct: 87 LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKA 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|227111869|ref|ZP_03825525.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R ++ +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284 >gi|67481529|ref|XP_656114.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|56473279|gb|EAL50713.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS] Length = 252 Score = 92.7 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 24/183 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRY 72 I++ SGG DS L+ L ++ + +F I A+ V + L ++ Sbjct: 35 PHDRIIIGFSGGKDSFLLVHVLSTLSKNVNFP-IDIVAVHVTNPQVGYQL------DLEQ 87 Query: 73 VSDVCSRLRIAHSVV--------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +C + + +++ T + R + + AK T I Sbjct: 88 SKTICESFGVPFISLQSEKMSESDIEDADKNTTFCLNCGKNRRRALLKFAKEHGFTSIAL 147 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD ET+ M G + + RP + I+ + Sbjct: 148 GHHMDDVAETLLMNQL----FCGCVATIPAQFTTEKYGIKFIRPLIEVPVVLIQEWTKYI 203 Query: 185 NIS 187 + Sbjct: 204 ELP 206 >gi|218887382|ref|YP_002436703.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758336|gb|ACL09235.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 248 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 27/220 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HC-------LRET 65 A I VAVSGG DS LL L + + + A+ V+ H LR Sbjct: 29 PGARIGVAVSGGMDSWVLLQVLK-LRQRIVPFRFEIMALHVNPGFDPHNHAPLLPWLRAN 87 Query: 66 AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 V S + + H V+ + + + R + E K T + Sbjct: 88 ---------GVASHIEVTDHGPVAHSPANLRNSPCFYCAKLRRTRLFELCKQYGLTHLAF 138 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD + T +M + GM + + L + RP + + I + Q Sbjct: 139 GHNADDLVTTFFMNLVQTGRVDGMSM----KEAFFGGRLTVIRPMMLVEKPVIARAVKQW 194 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 N+ +P + R + V+++ + + K F Sbjct: 195 NLPVWTNPCPSAFDSRRSEMTDEVKELCKGSKFAKANIFN 234 >gi|156937300|ref|YP_001435096.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566284|gb|ABU81689.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I] Length = 304 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 35/218 (16%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----CLRETAKDEVRYVSD 75 + IL+AVSGG DS+ L+ + + + A +V R E + Sbjct: 42 SKILLAVSGGKDSLVLMDVVAQLRDPK-----DLVAATVVEGAPGGYR---VKEAQVAKR 93 Query: 76 VCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 +L I H +++K +K + R + A+ + A ++ T Sbjct: 94 FAEKLGIKHITITFKELFGKSLEEMVAKGKLSPCTYCGVFRRRALEVLARRLGA-VVATG 152 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 HT DD+ T + R + + L+ +P + ++ + + Sbjct: 153 HTLDDEAHTALLNLLRGSWDDLLRLNAKSR----------IKPLRKVYEREVSIYAYIKK 202 Query: 186 ISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMK 221 + + R R R+R + + + K Sbjct: 203 FPFQSEECPYIVRRPSLRGRLREELFEYERERPGTLFK 240 >gi|260889893|ref|ZP_05901156.1| PP-loop family protein [Leptotrichia hofstadii F0254] gi|260860499|gb|EEX74999.1| PP-loop family protein [Leptotrichia hofstadii F0254] Length = 285 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 ++++ F + I + VSGG DS+ L+ + DR F A+S++ R Sbjct: 46 KFLKAINDF-DMIQDGDKIAIGVSGGKDSLLLVKLFQELKKDRR-KNFDFKAVSLNPGFR 103 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTIN 118 + + + + +L I +++ N K + + R ++ + + Sbjct: 104 -NSDLD-NF-KNNLDKLNIDCEIINTNIWEIANEKAKDYPCFLCAKMRRGILYTQVEELG 160 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + H FDD +ET + G + L + RP + + DI Sbjct: 161 FNKLTLGHHFDDVIETTLINML----YAGTMKTMTPKVPSTSGKLELIRPLIYVKEADII 216 Query: 179 SFLLQRNI 186 + I Sbjct: 217 DYTKTNGI 224 >gi|167579547|ref|ZP_02372421.1| PP-loop family family protein [Burkholderia thailandensis TXDOH] Length = 331 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDLVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D K+F Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264 Query: 227 RVKVNNAVAMLIPKYL 242 + NA+A ++P +L Sbjct: 265 VDNMFNALANVVPSHL 280 >gi|305662530|ref|YP_003858818.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] gi|304377099|gb|ADM26938.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] Length = 319 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 32/271 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVS 74 L + ILV +SGG DS L L + K + ++ + ++E ++ Sbjct: 49 LNHNDKILVGLSGGKDSYTLFKILLEI-----HDPAKIIGLMIEEGINGYNREEQYVFIK 103 Query: 75 DVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTINA 119 ++C + K + AR +++ +A+ N Sbjct: 104 NICKEFNVDCIKTDLKRELGYSVDDFMYLQHRKSLKFSACTYCGIARRRVLNYYARIYNV 163 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR- 178 + T H DD+++T + R + + L + + L + +P + Sbjct: 164 DKVATGHNLDDEVQTYIINILRGDIMRLVQLHPLSEVHSVSL-VKRIKPLRIIYEYETAF 222 Query: 179 -SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 ++L + E P +++ RVRVR + ++ ++ ++++ + + Sbjct: 223 FAYLEHYHFQETECPYISEEPTLRVRVRELLYSLE--------NRYPGIQLRFIEYIDKI 274 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 + Y+ I + + I + T LL Sbjct: 275 LEPYVISSRYRNIELPRCINCGEPTSPNRLL 305 >gi|261392453|emb|CAX50002.1| putative ATPase [Neisseria meningitidis 8013] Length = 338 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQSLKHGGDLAFDSEKM 280 >gi|254373114|ref|ZP_04988603.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570841|gb|EDN36495.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 251 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGKNTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|115763392|ref|XP_793633.2| PREDICTED: similar to MGC107918 protein [Strongylocentrotus purpuratus] gi|115952047|ref|XP_001189910.1| PREDICTED: similar to MGC107918 protein [Strongylocentrotus purpuratus] Length = 270 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 16/198 (8%) Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86 S G DS L L +L+++ + +SVD + D + V + + + Sbjct: 19 STGRDSTVLAYVLK-LLNEKYDYGLDLVLLSVDEGITGYRDDSLETVKRNQQQYDLPLKI 77 Query: 87 VSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 VS++ + R + A +NA I+T H DD ET+ Sbjct: 78 VSYEELYGWTMDSIVKQIGRKNNCTFCGVFRRQALDRGALLVNAGKIVTGHNADDIAETI 137 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 M R + L D I L +PF ++I + + + + Sbjct: 138 LMNILRGDIAR---LRRCADIITGAEGALPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI 194 Query: 195 TDDRFERVRVRRFVRDID 212 R R +++D++ Sbjct: 195 YSPNAYRGYARAYLKDLE 212 >gi|83718777|ref|YP_440848.1| C32 tRNA thiolase [Burkholderia thailandensis E264] gi|167617641|ref|ZP_02386272.1| PP-loop family family protein [Burkholderia thailandensis Bt4] gi|257140495|ref|ZP_05588757.1| PP-loop family protein [Burkholderia thailandensis E264] gi|123538186|sp|Q2T1V1|TTCA_BURTA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|83652602|gb|ABC36665.1| PP-loop family family [Burkholderia thailandensis E264] Length = 331 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDLVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D K+F Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264 Query: 227 RVKVNNAVAMLIPKYL 242 + NA+A ++P +L Sbjct: 265 VDNMFNALANVVPSHL 280 >gi|218768284|ref|YP_002342796.1| hypothetical protein NMA1465 [Neisseria meningitidis Z2491] gi|205830604|sp|A1IS67|TTCA_NEIMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|121052292|emb|CAM08621.1| hypothetical protein NMA1465 [Neisseria meningitidis Z2491] Length = 319 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|313887829|ref|ZP_07821509.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846172|gb|EFR33553.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 272 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 15/177 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I VA+SGG DS+ L L + + I++D ++ + Y C Sbjct: 38 PGDKIAVAISGGKDSLTLAKLLQELKKHNKVP-FELEFIAMDPGYLPENRERLEYN---C 93 Query: 78 SRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I V R + A+ + + H FDD Sbjct: 94 EKLGIPVKVHDSDVFSVAEKLSSGGSTCYMCARMRRGNLYNRAQELGCNKLALGHHFDDV 153 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNIS 187 +ETV + G + M + L + RP R E I F+ +S Sbjct: 154 IETVLLNII----YAGDFKTMMPKLKSKNFEGLELIRPMYLVREEAIIRFMKSTGLS 206 >gi|163800908|ref|ZP_02194808.1| putative ATPase [Vibrio sp. AND4] gi|159175257|gb|EDP60054.1| putative ATPase [Vibrio sp. AND4] Length = 297 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 D L I + +V R + A+ I AT + Sbjct: 87 LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|156974575|ref|YP_001445482.1| hypothetical protein VIBHAR_02293 [Vibrio harveyi ATCC BAA-1116] gi|269963076|ref|ZP_06177412.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|205830638|sp|A7N0R3|TTCA_VIBHB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|156526169|gb|ABU71255.1| hypothetical protein VIBHAR_02293 [Vibrio harveyi ATCC BAA-1116] gi|269832208|gb|EEZ86331.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 297 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 D L I + +V R + A+ I AT + Sbjct: 87 LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|90021870|ref|YP_527697.1| C32 tRNA thiolase [Saccharophagus degradans 2-40] gi|123090396|sp|Q21IJ4|TTCA_SACD2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|89951470|gb|ABD81485.1| PP-loop [Saccharophagus degradans 2-40] Length = 310 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 20/228 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L + IKF ++V+ ++ + + Sbjct: 36 GDKVMVCLSGGKDSYAMLDILMGLQKA---APIKFDIVAVN-MDQKQPGFPEHILPEYLD 91 Query: 79 RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I + +V + R + A+ I AT I H DD Sbjct: 92 SLGIEYHIVERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAERIGATKIALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ K M + D D I RP C D+ F Q+ Sbjct: 152 VETLFLNMFYGGRLKAMPPKLLAD----DKRNIIIRPLAYCVEADLEEFAKQKAFPII-- 205 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R +++ ++ + F L+ + +A Sbjct: 206 PCNLCGSQENLQRQAIKQMLQGWEKQFPGRIETIFSSLQRVSASQLAD 253 >gi|198274776|ref|ZP_03207308.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135] gi|198272223|gb|EDY96492.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135] Length = 254 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 26/222 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75 ILV +SGG DS+ L+ L + S K A V + + + Y+ + Sbjct: 31 GDRILVGLSGGKDSLA-LLELLARRSRIYKPKFSVVAAHVVMKN--IAYESDQ--TYLRE 85 Query: 76 VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + + + ++ + R + AK I H DD L Sbjct: 86 YAESLGVPYVCYETEFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL-------LQRN 185 ET+ M +G + ++ ++ I RP D++ +N Sbjct: 146 ETLLMNMT----FQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLKEMAALRGFRKQVKN 201 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +D +D + V + ++ A Y +++ Sbjct: 202 CPYEKDSHRSDMK----EVLARLEAMNPEARYSLWGSMNNIQ 239 >gi|118581899|ref|YP_903149.1| C32 tRNA thiolase [Pelobacter propionicus DSM 2379] gi|205830608|sp|A1AUS1|TTCA_PELPD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|118504609|gb|ABL01092.1| PP-loop domain protein [Pelobacter propionicus DSM 2379] Length = 269 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 21/212 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V VSGG DS L+ L L R+ + A+ +D D V D + Sbjct: 45 GDRIAVGVSGGKDS-YTLLLLLEELRRRAPIDFQLVAVIIDSGYPGYRGD---IVRDYVT 100 Query: 79 RLRIA-------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I H + + +P + + + + A ++ + H DD Sbjct: 101 SLGIPCHLETTTHYEIITEKRRPGSSYCSICARLKRGALYGLADSLGCNKLALGHHGDDF 160 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+ + + K M + + D + + RP + E+I F+ Q + Sbjct: 161 IETLLLNQFFVGSLKAMSANMLAD----NGRTTVIRPLVYASEEEIVDFMGQVGLPVV-- 214 Query: 192 PSN----TDDRFERVRVRRFVRDIDLHALYLK 219 N +R R++ +++++ +++ Sbjct: 215 SCNCPVSDSTDLKRRRMKELLKELEQEIPHIR 246 >gi|294636268|ref|ZP_06714674.1| PP-loop family protein [Edwardsiella tarda ATCC 23685] gi|291090443|gb|EFE23004.1| PP-loop family protein [Edwardsiella tarda ATCC 23685] Length = 311 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 87/273 (31%), Gaps = 35/273 (12%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65 E++ F + ++V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-DFTLVAVNLD-QKQPGF 84 Query: 66 ------AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISE 112 A + + I + +V + R ++ Sbjct: 85 PETVLPAYLDAQ---------GIEYRIVEEDTYGIVKEKIPEGKTTCSLCSRLRRGILYR 135 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A +N I H DD LET+++ KGM M D D + RP C Sbjct: 136 TATELNCNKIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYC 191 Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 R +DI F + P N +R ++ +RD D F+ ++ Sbjct: 192 REKDIERFASAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNV 249 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 V + +A + I L D Sbjct: 250 VPSHLADGALFDFKSLQQGGEVIDGGDLAFDRQ 282 >gi|255065884|ref|ZP_05317739.1| PP-loop family protein [Neisseria sicca ATCC 29256] gi|255049795|gb|EET45259.1| PP-loop family protein [Neisseria sicca ATCC 29256] Length = 319 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADPELFDFVGLERGQTLKHGGDLAFDSEKM 280 >gi|261364926|ref|ZP_05977809.1| PP-loop family protein [Neisseria mucosa ATCC 25996] gi|288566711|gb|EFC88271.1| PP-loop family protein [Neisseria mucosa ATCC 25996] Length = 319 Score = 92.7 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADPELFDFVGLERGQTLKHGGDLAFDSEKM 280 >gi|33598638|ref|NP_886281.1| hypothetical protein BPP4148 [Bordetella parapertussis 12822] gi|81426044|sp|Q7W398|TTCA_BORPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|33574767|emb|CAE39427.1| conserved hypothetical protein [Bordetella parapertussis] Length = 320 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 20/223 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ F + A+++D + E+ Sbjct: 45 AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--GYL 100 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + + + + + R ++ A + AT I H DD Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T ++ KGM + D + RP D+ ++ + Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPESDLIAYAQFKQFPII- 215 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R +++ D F L V Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257 >gi|197121365|ref|YP_002133316.1| PP-loop domain protein [Anaeromyxobacter sp. K] gi|254789868|sp|B4UF77|TTCA_ANASK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|196171214|gb|ACG72187.1| PP-loop domain protein [Anaeromyxobacter sp. K] Length = 291 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 20/270 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + E++R F + I+VAVSGG DS LL L + +R+ A+++D Sbjct: 11 LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67 Query: 61 CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113 + + V D + + + V + R ++ Sbjct: 68 --QGQPGFPAQVVEDHLRSVGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A + T I H DD +ET+ + G S D + RP Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVVRPLCYAA 181 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 ED+ +F D + R RV+R + ++ +K L V Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHALAHVVP- 240 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDST 262 + L+ + L + + D Sbjct: 241 --SHLLDRDLHRQLADATGRDPWLDAEDEE 268 >gi|288817937|ref|YP_003432284.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6] gi|288787336|dbj|BAI69083.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6] gi|308751535|gb|ADO45018.1| Rhodanese domain protein [Hydrogenobacter thermophilus TK-6] Length = 440 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 21/202 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F++ + V R + VAVSGG DS+ LL AL ++ A ++ Sbjct: 59 FVNRVRRVVEEFRMFKPGERVAVAVSGGKDSVALLHALKKAFPEQ-----DIYAFYINLG 113 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-----------QTGLMAAAREARYALI 110 ++ + + V ++ + + + + K + + + + + + Sbjct: 114 IKYYSDHLEKKVIELAEMVGVPIEIYNLKEKEGYTIDDFLLTKYKNKMCSVCGLIKRNIF 173 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A +NA + T H DD + T+ M +G+ L +P + Sbjct: 174 TTLAVRVNADTVATGHNLDDTVSTM-MSLFFAGDFEGIARLKPVLKPLIKGQPRKIKPLI 232 Query: 171 RCRREDIRS--FLLQRNISWCE 190 +I ++ + E Sbjct: 233 TTP--EIEDLYYVALNELPVQE 252 >gi|220916067|ref|YP_002491371.1| PP-loop domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|254789867|sp|B8JEH9|TTCA_ANAD2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|219953921|gb|ACL64305.1| PP-loop domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 291 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 20/270 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + E++R F + I+VAVSGG DS LL L + +R+ A+++D Sbjct: 11 LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67 Query: 61 CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113 + + V D + + + V + R ++ Sbjct: 68 --QGQPGFPAQVVEDHLRSVGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A + T I H DD +ET+ + G S D + RP Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVVRPLCYAA 181 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 ED+ +F D + R RV+R + ++ +K L V Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHALAHVVP- 240 Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDST 262 + L+ + L + + D Sbjct: 241 --SHLLDRDLHRQLADATGRDPWLDAEDEE 268 >gi|134283598|ref|ZP_01770297.1| PP-loop family protein [Burkholderia pseudomallei 305] gi|134245007|gb|EBA45102.1| PP-loop family protein [Burkholderia pseudomallei 305] Length = 331 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 32/282 (11%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272 Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261 V + + + IA +D D+ Sbjct: 273 ANVVPSHLMDARLFPFAGLRATGEADPNGDIAFDEDPCGTDA 314 >gi|86170928|ref|XP_966113.1| PP-loop family protein, putative [Plasmodium falciparum 3D7] gi|46361078|emb|CAG25365.1| PP-loop family protein, putative [Plasmodium falciparum 3D7] Length = 482 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 12/140 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R I +AVSGG DS L L ++ ++ + +++D ++ D ++ V Sbjct: 43 RMFEDNDKICIAVSGGKDSSVLAHVLVNLKKKYNY-NWELFLLAIDEGIKGYRDDSLKVV 101 Query: 74 SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++ ++N + R + A NAT + Sbjct: 102 YKLEKLYNLPLKILKFENLFSYTMDDVVKFIGKKNNCTVCGVFRRQSFEKGALLFNATKL 161 Query: 123 MTAHTFDDQLETVYMRSQRD 142 +T H DD ET+ M R Sbjct: 162 VTGHNADDLAETILMNMCRG 181 >gi|86145984|ref|ZP_01064311.1| putative ATPase [Vibrio sp. MED222] gi|85836189|gb|EAQ54320.1| putative ATPase [Vibrio sp. MED222] Length = 297 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L + R IKF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIQYAEHLD 202 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ + D D K F+ ++ + +A Sbjct: 203 FPII--PCNLCGSQENLQRQNIKAMLIDWDKKTPGRVEKIFKSIQNVSPSQLAD 254 >gi|149191306|ref|ZP_01869560.1| putative ATPase [Vibrio shilonii AK1] gi|148834842|gb|EDL51825.1| putative ATPase [Vibrio shilonii AK1] Length = 297 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 D L I + +V R + A+ I AT I Sbjct: 87 LPDYFETLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIRYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|118497755|ref|YP_898805.1| ATPase [Francisella tularensis subsp. novicida U112] gi|194323727|ref|ZP_03057503.1| hypothetical protein FTE_0562 [Francisella tularensis subsp. novicida FTE] gi|208779820|ref|ZP_03247164.1| hypothetical protein FTG_0565 [Francisella novicida FTG] gi|254374565|ref|ZP_04990046.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|205830356|sp|A0Q736|TTCA2_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|118423661|gb|ABK90051.1| predicted ATPase of the PP-loop superfamily [Francisella novicida U112] gi|151572284|gb|EDN37938.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|194322091|gb|EDX19573.1| hypothetical protein FTE_0562 [Francisella tularensis subsp. novicida FTE] gi|208744275|gb|EDZ90575.1| hypothetical protein FTG_0565 [Francisella novicida FTG] Length = 253 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|221199782|ref|ZP_03572825.1| PP-loop family protein [Burkholderia multivorans CGD2M] gi|221208613|ref|ZP_03581613.1| PP-loop family protein [Burkholderia multivorans CGD2] gi|221171424|gb|EEE03871.1| PP-loop family protein [Burkholderia multivorans CGD2] gi|221180021|gb|EEE12425.1| PP-loop family protein [Burkholderia multivorans CGD2M] Length = 331 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 63 GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 117 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ + + + + + R ++ A + AT I H DD Sbjct: 118 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM D D + RP + D+ + R Sbjct: 178 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 232 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246 P N +R ++ +R+ D F L V ++ + + + ++ Sbjct: 233 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 291 Query: 247 RSIIAISQDI 256 DI Sbjct: 292 TGQADPQGDI 301 >gi|221215612|ref|ZP_03588575.1| PP-loop family protein [Burkholderia multivorans CGD1] gi|221164600|gb|EED97083.1| PP-loop family protein [Burkholderia multivorans CGD1] Length = 326 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 58 GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 112 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ + + + + + R ++ A + AT I H DD Sbjct: 113 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 172 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM D D + RP + D+ + R Sbjct: 173 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 227 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246 P N +R ++ +R+ D F L V ++ + + + ++ Sbjct: 228 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 286 Query: 247 RSIIAISQDI 256 DI Sbjct: 287 TGQADPQGDI 296 >gi|294789286|ref|ZP_06754524.1| PP-loop family protein [Simonsiella muelleri ATCC 29453] gi|294482711|gb|EFG30400.1| PP-loop family protein [Simonsiella muelleri ATCC 29453] Length = 317 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 84/256 (32%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + + I F I+V+ L + +V + Sbjct: 39 GDKIMVCLSGGKDSYALLDILRQLQAS---APIDFEVIAVN--LDQKQPGFPEHVLPEYL 93 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + + R ++ AK + T I H DD Sbjct: 94 ASIGVPFKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 154 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIQYAELKKFPII 208 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + ++D D F L+ V + +A Sbjct: 209 --PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 266 Query: 247 RSIIAISQDILNIDST 262 R L DS Sbjct: 267 RGQNLKHGGDLAFDSE 282 >gi|167835154|ref|ZP_02462037.1| PP-loop family family protein [Burkholderia thailandensis MSMB43] Length = 331 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 91/283 (32%), Gaps = 32/283 (11%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272 Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDST 262 V + + + IA +D D+ Sbjct: 273 ANVVPSHLMDAQLFPFAGLRATGEADPNGDIAFDEDPCGTDAL 315 >gi|119945858|ref|YP_943538.1| PP-loop domain-containing protein [Psychromonas ingrahamii 37] gi|205830618|sp|A1SWS4|TTCA_PSYIN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|119864462|gb|ABM03939.1| PP-loop domain protein [Psychromonas ingrahamii 37] Length = 309 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 24/260 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + R+ I F I+V+ L + D ++ + Sbjct: 37 GDRVMVCLSGGKDSFTMLDILLEL---RAAAPIHFEIIAVN--LDQKQPDFPEHILPEYL 91 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V + R ++ AK + AT I H DD Sbjct: 92 QKLGVDYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L T+ + G L M ++ D + RP C+ ++I ++ + Sbjct: 152 LLATLMLNMF-----FGGKLKSMPAKLVSDNGEHVVIRPLAYCKEKEIEAYAKLKEYPII 206 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + + + D+ F ++ V + ++ Sbjct: 207 --PCNLCGSQPNLQRQVTKNMLNEWDVKFPGRLETMFTAMQNVVPSHLSDTALFNFKEID 264 Query: 247 RSIIAISQDILNIDSTLLFY 266 +S I L D + + Sbjct: 265 KSSGVIDGGDLAFDKEPIKH 284 >gi|317048255|ref|YP_004115903.1| PP-loop domain-containing protein [Pantoea sp. At-9b] gi|316949872|gb|ADU69347.1| PP-loop domain protein [Pantoea sp. At-9b] Length = 311 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS LL L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTLLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V +L + + +V+ + R ++ A + Sbjct: 84 --FPAHVLPAYLDKLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R V +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNIVPSHMA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + I L D L Sbjct: 256 DINLFDFKGIQHGDAVIDGGDLAFDRESL 284 >gi|325204266|gb|ADY99719.1| PP-loop family protein [Neisseria meningitidis M01-240355] Length = 319 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQSLKHGGDLAFDSEKM 280 >gi|325136231|gb|EGC58839.1| PP-loop family protein [Neisseria meningitidis M0579] gi|325202023|gb|ADY97477.1| PP-loop family protein [Neisseria meningitidis M01-240149] gi|325208224|gb|ADZ03676.1| PP-loop family protein [Neisseria meningitidis NZ-05/33] Length = 319 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQTLKHGGDLAFDSEKM 280 >gi|304387442|ref|ZP_07369633.1| PP-loop family protein [Neisseria meningitidis ATCC 13091] gi|304338535|gb|EFM04654.1| PP-loop family protein [Neisseria meningitidis ATCC 13091] Length = 319 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQSLKHGGDLAFDSEKM 280 >gi|15676911|ref|NP_274057.1| hypothetical protein NMB1023 [Neisseria meningitidis MC58] gi|81784654|sp|Q9JZJ6|TTCA_NEIMB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|7226263|gb|AAF41423.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984645|gb|EFV63609.1| PP-loop family protein [Neisseria meningitidis H44/76] gi|325134209|gb|EGC56858.1| PP-loop family protein [Neisseria meningitidis M13399] gi|325140257|gb|EGC62782.1| PP-loop family protein [Neisseria meningitidis CU385] gi|325144400|gb|EGC66702.1| PP-loop family protein [Neisseria meningitidis M01-240013] gi|325200292|gb|ADY95747.1| PP-loop family protein [Neisseria meningitidis H44/76] gi|325206148|gb|ADZ01601.1| PP-loop family protein [Neisseria meningitidis M04-240196] Length = 319 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + + A+++D + +EV Sbjct: 34 PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + +RD D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262 Query: 247 RSIIAISQDILNIDSTLL 264 R L DS + Sbjct: 263 RGQSLKHGGDLAFDSEKM 280 >gi|121603429|ref|YP_980758.1| C32 tRNA thiolase [Polaromonas naphthalenivorans CJ2] gi|205830609|sp|A1VJK9|TTCA_POLNA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120592398|gb|ABM35837.1| tRNA s(2)C-32 sulfurtransferase [Polaromonas naphthalenivorans CJ2] Length = 314 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 17/179 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V VSGG DS +L L + R+ + A+++D + +V + Sbjct: 50 GDKVMVCVSGGKDSYAMLDILLKLQK-RAPINFELVAVNLD-QKQPG---FPEHVLPEYL 104 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S+L + + + + + L + R ++ A + T I H DD Sbjct: 105 SKLGVPYHIENQDTYSIVTRVIPEGKTLCSLCSRLRRGILYRVAGELGCTKIALGHHRDD 164 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 L+T ++ KGM + D + RP +D+ + ++ Sbjct: 165 MLQTFFLNMFFAAKLKGM----PPKLVSDDGKNIVIRPMAYVTEKDLTRWAQVQDFPII 219 >gi|161526144|ref|YP_001581156.1| C32 tRNA thiolase [Burkholderia multivorans ATCC 17616] gi|189349141|ref|YP_001944769.1| C32 tRNA thiolase [Burkholderia multivorans ATCC 17616] gi|205830564|sp|A9AKB0|TTCA_BURM1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|160343573|gb|ABX16659.1| PP-loop domain protein [Burkholderia multivorans ATCC 17616] gi|189333163|dbj|BAG42233.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Burkholderia multivorans ATCC 17616] Length = 331 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 63 GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 117 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ + + + + + R ++ A + AT I H DD Sbjct: 118 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM D D + RP + D+ + R Sbjct: 178 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 232 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246 P N +R ++ +R+ D F L V ++ + + + ++ Sbjct: 233 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 291 Query: 247 RSIIAISQDI 256 DI Sbjct: 292 TGQADPQGDI 301 >gi|332296196|ref|YP_004438119.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796] gi|332179299|gb|AEE14988.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796] Length = 241 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 20/234 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + V +SGG DS+ L AL+ VL R K K A+ VD + D + D Sbjct: 21 LPNNTTLAVGLSGGKDSLITLWALNEVLRHRKE-KYKLCAVLVDQGFPGFSYD---KIKD 76 Query: 76 VCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I + + + A R + + AK + AT + H DD L Sbjct: 77 YLILNGIPYIERKSYIYSSLSKSESPCAICSHLRRGALVDGAKIMGATHLALGHHLDDLL 136 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ-RNISWCED 191 E + M + + + L ++++ RP L E IR + + I+ E Sbjct: 137 EGIVMTIAMNGRPNVL----VPIKYLSRRDIYLIRPLLLVEEEHIRILSKKIQGINPVES 192 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 ER++++ + LY ++ + + + +L+ + + Sbjct: 193 ECPYSKDSERIKIKNW--------LYQGYNNWKVMHQHMASWARLLLEEEMKKQ 238 >gi|251789383|ref|YP_003004104.1| C32 tRNA thiolase [Dickeya zeae Ech1591] gi|247538004|gb|ACT06625.1| PP-loop domain protein [Dickeya zeae Ech1591] Length = 313 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + +V Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHVLPQYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 DSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F R Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R ++ +RD D F ++ V + + + Sbjct: 209 -PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHLCDTALFDFKSIRQ 267 Query: 248 SIIAISQDILNIDSTLL 264 + L D + Sbjct: 268 GSAVVDGGDLAFDREEM 284 >gi|257386246|ref|YP_003176019.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286] gi|257168553|gb|ACV46312.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286] Length = 332 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 76/222 (34%), Gaps = 38/222 (17%) Query: 2 FLSPIES-VRFFVRS--LVY-------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51 F +E VR +R LV P ++ +SGG DS+ L L V ++ +I Sbjct: 26 FCRTVEKRVRRRIREDGLVPRDATPEDPETWVIGLSGGKDSVVLTQILQDVFAE--DPRI 83 Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS------------WKNSKPQTGLM 99 + A+S+ + + + + L I H VVS ++ Sbjct: 84 ELVALSIHEGIEGYRDESLDASVTLTDDLGIRHEVVSYDEEFDVRMDEVVEDDPEGMAAC 143 Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD------------YAEKG 147 A R L+S++A ++A ++T H DD+ ET M Sbjct: 144 AYCGVFRRDLLSKYADELDADKLLTGHNLDDEAETALMNVLEGDVTQIAQHFDSSLGPFD 203 Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNIS 187 G D + + I R P +++ + + Sbjct: 204 ADGDGPADRERPETDQHIPRAKPLRDIPEKEVALYARFEELP 245 >gi|257126090|ref|YP_003164204.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b] gi|257050029|gb|ACV39213.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b] Length = 275 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 14/188 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 ++++ F + I + VSGG DS+ L+ + DR F A+S++ R Sbjct: 36 KFLKAINDF-DMIQDGDKIAIGVSGGKDSLLLVKLFQELKKDRR-KNFDFKAVSLNPGFR 93 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + + + + +L I ++ N K + + R ++ + + Sbjct: 94 -NSDLD-NF-KNNLDKLNIDCEIIDTNIWEIANEKAKDYPCFLCAKMRRGILYTQVEELG 150 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + H FDD +ET + G + L + RP + + DI Sbjct: 151 FNKLTLGHHFDDVIETTLINMF----YAGTMKTMTPKVPSTSGKLELIRPLIYVKEADII 206 Query: 179 SFLLQRNI 186 + I Sbjct: 207 DYTKTNGI 214 >gi|317491972|ref|ZP_07950406.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920093|gb|EFV41418.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 312 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 86/256 (33%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L ++ A+++D + +++ Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 95 SIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDM 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARAFPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + +A Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDRRHPGRIETMFSAMQNVVPSHLADTNLFDFKGIQHG 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SEVVDGGDLAFDREEL 284 >gi|281212130|gb|EFA86290.1| ATP-binding domain-containing protein 3 [Polysphondylium pallidum PN500] Length = 385 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 27/234 (11%) Query: 16 LVYPAHILVAVSGGS---------DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + SGG DS L + ++L+ R + +S+D + Sbjct: 67 FQRGDKVAIGASGGITINIVFNLIDSTVLAEIM-TLLNKRHDYGLDLFLLSIDEGITGYR 125 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAK 115 D + V + +I ++S+K R + A Sbjct: 126 DDSLETVKRNQQQYQIPLKILSYKELYDWTMDEIVKEIGLKNNCTFCGVFRRQALDRGAV 185 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCR 173 + A I+T H DD ET+ M R + C I+ + R PF Sbjct: 186 LLGANKIVTGHNADDIAETILMNLLRGDVPR----LQRCVNIVTGSEGTLPRSKPFKYTY 241 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +++I + + + + R R F++D++ + + Sbjct: 242 QKEIVMYAYFKKLDYFTTECIYAPNAYRGHARDFLKDLEAARPSVIIDIIHSAE 295 >gi|50120922|ref|YP_050089.1| C32 tRNA thiolase [Pectobacterium atrosepticum SCRI1043] gi|81645225|sp|Q6D5P6|TTCA_ERWCT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|49611448|emb|CAG74896.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHILPQYLDNIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R ++ +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRHPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 256 DHALFDFKNIRHGSDVVDGGDLAFDREEL 284 >gi|238021289|ref|ZP_04601715.1| hypothetical protein GCWU000324_01188 [Kingella oralis ATCC 51147] gi|237868269|gb|EEP69275.1| hypothetical protein GCWU000324_01188 [Kingella oralis ATCC 51147] Length = 317 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 22/255 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS LL L + + + + A+++D + +EV Sbjct: 35 GDKIMVCLSGGKDSYALLDILRQLQASAPI-EFELVAVNLD-QKQPGFPEEVLP--TYLE 90 Query: 79 RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + + R ++ AK + T I H DD Sbjct: 91 SIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDI 150 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190 + T+++ G L M ++ D I RP + +D+ + + Sbjct: 151 IATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII- 204 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + ++D D F L+ V + +A R Sbjct: 205 -PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLQR 263 Query: 248 SIIAISQDILNIDST 262 L DS Sbjct: 264 GQALKHGGDLAFDSE 278 >gi|295093682|emb|CBK82773.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Coprococcus sp. ART55/1] Length = 408 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 25/225 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS L+ L + + I +D + + D Sbjct: 162 GDRIAVCISGGKDS-FLMAKCFQELKRHNKFPFELKFIVMDPGYSPANRKVIE---DNAR 217 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + R + +AK + I H +DD +ET Sbjct: 218 MLNIPIQIFESDIFDSVYNVEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIET 277 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + M G + M + + + RP R +DI+++ + + + Sbjct: 278 ILMGML-----YGAQMQTMMPKLHSTNFEGMELIRPLYMVREDDIKAWRDYNELHFIQCA 332 Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 N + + +R +++ + + +++ F+ + Sbjct: 333 CKFTDTCTTCNNEETKSKRQEIKQLIATLKKTNPFVEGNIFKSVE 377 >gi|163816026|ref|ZP_02207396.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759] gi|158448836|gb|EDP25831.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759] Length = 402 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 25/225 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS L+ L + + I +D + + D Sbjct: 158 GDRIAVCISGGKDS-FLMAKCFQELKRHNKFPFELKFIVMDPGYSPANRKVIE---DNAR 213 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + R + +AK + I H +DD +ET Sbjct: 214 MLNIPIQIFESDIFDSVYNVEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIET 273 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + M G + M + + + RP R +DI+++ + + + Sbjct: 274 ILMGML-----YGAQMQTMMPKLHSTNFEGMELIRPLYMVREDDIKAWRDYNELHFIQCA 328 Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 N + + +R +++ + + +++ F+ + Sbjct: 329 CKFTDTCTTCNNEETKSKRQEIKQLIATLKKTNPFVEGNIFKSVE 373 >gi|88859652|ref|ZP_01134292.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2] gi|88818669|gb|EAR28484.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2] Length = 304 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 22/254 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS + L S+ K + A+++D + +V Sbjct: 37 GDRIMVCMSGGKDSYTMFDILQSLQRAAPI-KFELIAVNLD-QKQPG---FPEHVLPQYF 91 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K + R ++ AK + AT I H DD Sbjct: 92 ESLGVEYKIVEEDTYKIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ KGM D + RP C+ DI + + Sbjct: 152 MIETLFLNMFYGGKLKGM----PAKLASDDGQHMVIRPLAYCKEADIEEYAEHKEFPII- 206 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + +R ++ +++ D F ++ + +A + Sbjct: 207 -PCNLCGSQENLQRKNIKMMLQEWDKTNPGRIETIFTAMQNVTPSHLADNNLFDFKNLQK 265 Query: 248 SIIAISQDILNIDS 261 S +AI + + +D Sbjct: 266 SDVAIGEGDIALDK 279 >gi|239618090|ref|YP_002941412.1| PP-loop domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506921|gb|ACR80408.1| PP-loop domain protein [Kosmotoga olearia TBF 19.5.1] Length = 307 Score = 92.3 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 73/208 (35%), Gaps = 27/208 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FLS ++ + + ILVAVSGG DS+ L L+ + + + + +D Sbjct: 30 FLSRVKKAIHMFKMFDKSSKILVAVSGGKDSLVLWDVLYRL-------EYQTEGLYIDLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LI 110 + ++ + + + AA + R ++ Sbjct: 83 IGSYSETSKEKAKSFAKSRNLTLHIEDVRKYLHGLSTPEAAWKMRRKTCSVCGLVKRYIM 142 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SR 167 ++ + + +I T H DD+ T+ G G +L + + + Sbjct: 143 NKFSHEGDYKVIATGHNLDDEAATLLGNLLHWQ----TGYLGKQYPVLPKTHEKLTPKVK 198 Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPS 193 P + +++ +F + + I + E PS Sbjct: 199 PLILVTEKEVATFAIMKGIEYIFEECPS 226 >gi|190572183|ref|YP_001970028.1| hypothetical protein Smlt0103 [Stenotrophomonas maltophilia K279a] gi|190010105|emb|CAQ43713.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 309 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L + + A+++D + D +V + Sbjct: 51 AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 105 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + + V + + + R + +A+T T I H D Sbjct: 106 LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 165 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T +M LSGM + D + RP R DI + R Sbjct: 166 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGKHVVIRPLAYVRESDIVDYAQARQFPI 220 Query: 189 CEDPSNT 195 P N Sbjct: 221 I--PCNL 225 >gi|53717955|ref|YP_106941.1| C32 tRNA thiolase [Burkholderia pseudomallei K96243] gi|53724604|ref|YP_104839.1| C32 tRNA thiolase [Burkholderia mallei ATCC 23344] gi|67639064|ref|ZP_00437981.1| PP-loop family protein [Burkholderia mallei GB8 horse 4] gi|76811437|ref|YP_331933.1| C32 tRNA thiolase [Burkholderia pseudomallei 1710b] gi|121598530|ref|YP_994348.1| PP-loop family protein [Burkholderia mallei SAVP1] gi|124386645|ref|YP_001028003.1| PP-loop family protein [Burkholderia mallei NCTC 10229] gi|126441802|ref|YP_001057380.1| PP-loop family protein [Burkholderia pseudomallei 668] gi|126451258|ref|YP_001081774.1| PP-loop family protein [Burkholderia mallei NCTC 10247] gi|126452389|ref|YP_001064623.1| PP-loop family protein [Burkholderia pseudomallei 1106a] gi|167004603|ref|ZP_02270361.1| PP-loop family protein [Burkholderia mallei PRL-20] gi|167717727|ref|ZP_02400963.1| PP-loop family protein [Burkholderia pseudomallei DM98] gi|167736759|ref|ZP_02409533.1| PP-loop family protein [Burkholderia pseudomallei 14] gi|167813861|ref|ZP_02445541.1| PP-loop family protein [Burkholderia pseudomallei 91] gi|167822379|ref|ZP_02453850.1| PP-loop family protein [Burkholderia pseudomallei 9] gi|167843967|ref|ZP_02469475.1| PP-loop family protein [Burkholderia pseudomallei B7210] gi|167892470|ref|ZP_02479872.1| PP-loop family protein [Burkholderia pseudomallei 7894] gi|167900969|ref|ZP_02488174.1| PP-loop family protein [Burkholderia pseudomallei NCTC 13177] gi|167909185|ref|ZP_02496276.1| PP-loop family protein [Burkholderia pseudomallei 112] gi|167917219|ref|ZP_02504310.1| PP-loop family protein [Burkholderia pseudomallei BCC215] gi|217424979|ref|ZP_03456475.1| PP-loop family protein [Burkholderia pseudomallei 576] gi|226199781|ref|ZP_03795332.1| PP-loop family protein [Burkholderia pseudomallei Pakistan 9] gi|242314458|ref|ZP_04813474.1| PP-loop family protein [Burkholderia pseudomallei 1106b] gi|254176826|ref|ZP_04883483.1| PP-loop family protein [Burkholderia mallei ATCC 10399] gi|254196263|ref|ZP_04902687.1| PP-loop family protein [Burkholderia pseudomallei S13] gi|254201947|ref|ZP_04908311.1| PP-loop family protein [Burkholderia mallei FMH] gi|254259203|ref|ZP_04950257.1| PP-loop family protein [Burkholderia pseudomallei 1710a] gi|254359781|ref|ZP_04976052.1| PP-loop family protein [Burkholderia mallei 2002721280] gi|81380602|sp|Q63Y74|TTCA_BURPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|81603697|sp|Q62EN9|TTCA_BURMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123600535|sp|Q3JWX0|TTCA_BURP1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830565|sp|A3MND8|TTCA_BURM7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830566|sp|A2S7T4|TTCA_BURM9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830567|sp|A1V7Z5|TTCA_BURMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830568|sp|A3NQK2|TTCA_BURP0 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830569|sp|A3N4V9|TTCA_BURP6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|52208369|emb|CAH34303.1| conserved hypothetical protein [Burkholderia pseudomallei K96243] gi|52428027|gb|AAU48620.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|76580890|gb|ABA50365.1| PP-loop family family [Burkholderia pseudomallei 1710b] gi|121227340|gb|ABM49858.1| PP-loop family protein [Burkholderia mallei SAVP1] gi|124294665|gb|ABN03934.1| PP-loop family protein [Burkholderia mallei NCTC 10229] gi|126221295|gb|ABN84801.1| PP-loop family protein [Burkholderia pseudomallei 668] gi|126226031|gb|ABN89571.1| PP-loop family protein [Burkholderia pseudomallei 1106a] gi|126244128|gb|ABO07221.1| PP-loop family protein [Burkholderia mallei NCTC 10247] gi|147747841|gb|EDK54917.1| PP-loop family protein [Burkholderia mallei FMH] gi|148028995|gb|EDK86927.1| PP-loop family protein [Burkholderia mallei 2002721280] gi|160697867|gb|EDP87837.1| PP-loop family protein [Burkholderia mallei ATCC 10399] gi|169653006|gb|EDS85699.1| PP-loop family protein [Burkholderia pseudomallei S13] gi|217391999|gb|EEC32025.1| PP-loop family protein [Burkholderia pseudomallei 576] gi|225928132|gb|EEH24168.1| PP-loop family protein [Burkholderia pseudomallei Pakistan 9] gi|238519619|gb|EEP83089.1| PP-loop family protein [Burkholderia mallei GB8 horse 4] gi|242137697|gb|EES24099.1| PP-loop family protein [Burkholderia pseudomallei 1106b] gi|243060159|gb|EES42345.1| PP-loop family protein [Burkholderia mallei PRL-20] gi|254217892|gb|EET07276.1| PP-loop family protein [Burkholderia pseudomallei 1710a] Length = 331 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 32/282 (11%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D F L Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272 Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261 V + + + IA +D D+ Sbjct: 273 ANVVPSHLMDARLFPFAGLRATGEADPNGDIAFDEDPCGTDA 314 >gi|92113003|ref|YP_572931.1| PP-loop [Chromohalobacter salexigens DSM 3043] gi|122420525|sp|Q1QZ76|TTCA_CHRSD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91796093|gb|ABE58232.1| tRNA s(2)C-32 sulfurtransferase [Chromohalobacter salexigens DSM 3043] Length = 284 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 22/260 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ + + A+++D + +V + Sbjct: 36 GDKVMVCLSGGKDSYTMLDILMNLQRNAPVA-FELVAVNLD-QKQPG---FPEHVLPEYL 90 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 R+ + + +V A R + A+ I A + H +D Sbjct: 91 ERVGVPYHIVERDTYSVVKEKTPEGKTTCALCSRLRRGTLYGFAEEIGANKVALGHHRED 150 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M +L D I RP CR DI + R Sbjct: 151 MLETLFLNMF-----FGGSLKSMPPKLLSDDGKHIVIRPLAYCREADIAEYAEWREFPII 205 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+++ + + + + N + + Sbjct: 206 --PCNLCGS-QPNLQRQVVKEMLTEWEEKHPGRLETMFKAITNVAPSQLADRAMFDFEGL 262 Query: 250 IAISQDILNIDSTLLFYLLR 269 +D L L R Sbjct: 263 EDKQRDFLARRIETFDVLAR 282 >gi|262402130|ref|ZP_06078691.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586] gi|262350912|gb|EEZ00045.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586] Length = 310 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 24/259 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 40 GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + ++ A R ++ AK + AT I H DD Sbjct: 95 ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G + GM ++ D + RP CR +DI + R Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRAYPII 209 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V+ + D D F+ ++ V + +A Sbjct: 210 --PCNLCGSQPNLQRQAVKMMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267 Query: 247 RSIIAISQDILNIDSTLLF 265 + I+ + D + Sbjct: 268 KDSGVINGGDIGFDKEEMA 286 >gi|254369146|ref|ZP_04985158.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122096|gb|EDO66236.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 251 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 KKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|288931458|ref|YP_003435518.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] gi|288893706|gb|ADC65243.1| PP-loop domain protein [Ferroglobus placidus DSM 10642] Length = 290 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 73/197 (37%), Gaps = 10/197 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 +LS +E L +L A+SGG DS+ ++ AL + IK A+ ++ Sbjct: 27 YLSLVERSIRKYGILKRGEKVLAAISGGKDSVAMIAALKELEDKLG---IKLEALHINLG 83 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKT 116 + E ++ VC L + VV + + + A+ +++ A+ Sbjct: 84 IGEYSRKSEEVSRKVCEELDVPLHVVYLSEYGFTIGDVKRKACSVCGNAKRYIMNRFARE 143 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 +I T H +D + V E L + Y + ++P ++ Sbjct: 144 EGFDVIATGHCAEDIVANVLKNLYSGNFEWSEKL--LPRIEGYFKFVSKAKPLYEIGEKE 201 Query: 177 IRSFLLQRNISWCEDPS 193 F+L + I++ D Sbjct: 202 NLLFVLSKGITFLPDEC 218 >gi|148978813|ref|ZP_01815166.1| putative ATPase [Vibrionales bacterium SWAT-3] gi|145962124|gb|EDK27409.1| putative ATPase [Vibrionales bacterium SWAT-3] Length = 297 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L + R IKF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR D+ + + Sbjct: 147 HHMDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIKYAEHKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|294917174|ref|XP_002778414.1| hypothetical protein Pmar_PMAR018210 [Perkinsus marinus ATCC 50983] gi|239886807|gb|EER10209.1| hypothetical protein Pmar_PMAR018210 [Perkinsus marinus ATCC 50983] Length = 484 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRE---TAKDEVRYVSDVC 77 +++++SGG DS LI L ++ R K A+ + + RE A+ E+ V+ +C Sbjct: 95 VVLSLSGGVDSSSTLILLCALRYHR-VADWKLRALYMGYSGNRENLDEARSELNLVAWLC 153 Query: 78 SRLRIAHSVVSWKNSKPQT------------GLMAAAREARYALISEHAKTINATLIMTA 125 + + + +P + R+ + S + N +++ Sbjct: 154 EQCNVQLFAFNIDLPRPHGLEGTTSGGVTRDEYETQTKSIRFRMYSLASGDENC-VVVLG 212 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQR 184 H DD E + R + M L+ I RP + R+ + Sbjct: 213 HHQDDVDENRLEQLSRGHVMGDMDGMHRVRESPPGLDRCIVCRPLIYERKSTFVKVATEA 272 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +I + D + R R+ + + L M + +++ A LI Sbjct: 273 HIPYVHDSTPAWS--VRGITRKALDAVLLDDNTTAMHQILADVACMSSRAAELI 324 >gi|170696061|ref|ZP_02887198.1| PP-loop domain protein [Burkholderia graminis C4D1M] gi|170139053|gb|EDT07244.1| PP-loop domain protein [Burkholderia graminis C4D1M] Length = 324 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 30/238 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 55 GDKVMVCLSGGKDSYAMLDVLMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 109 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + + + + R ++ A + AT I H DD Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 170 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ +RD + K+F + NA+ ++P +L H Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALTNVVPSHLMDH 273 >gi|237749225|ref|ZP_04579705.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter formigenes OXCC13] gi|229380587|gb|EEO30678.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter formigenes OXCC13] Length = 299 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 18/206 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R + ++V VSGG DS LL L + S R+ A+++D L D + Sbjct: 56 FRLIEENDKVMVCVSGGKDSFALLDILVVLQS-RAPIHFDIVAVNLDQQLPGFPTDILP- 113 Query: 73 VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + ++ + + + + R ++ + A + T I Sbjct: 114 --AYLEKKQVPYHIEVQDTYSIIQRLIPEGKAVCSLCSRLRRGILYKVASELGVTKIALG 171 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD LET ++ K S D + RP + + D+ F + Sbjct: 172 HHRDDVLETFFLNLFFGSKLK----SMPPKLKSKDGKHIVIRPLINVKETDLEKFAQMQQ 227 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI 211 P N + R+ ++ + Sbjct: 228 YPVF--PKNLCGA-KENMQRQHIKSM 250 >gi|251770826|gb|EES51414.1| probable ATPase, PP-loop superfamily protein [Leptospirillum ferrodiazotrophum] Length = 312 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 35/220 (15%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 H+LVAVSGG DS+ L L + + + +D + E + + +V Sbjct: 46 AGDHVLVAVSGGKDSLALWDILTRL-------GYRTTGFHLDLGIGEYSAESRGHVEAFA 98 Query: 78 SRLRIAHSVVSWKNSKPQTG---LMAAAREA--------RYALISEHAKTINATLIMTAH 126 SR + V S ++S + A R A RY ++ A NAT++ T H Sbjct: 99 SRHGLPLVVESLRDSVNGSVTDIAQATRRPACSGCGMSKRY-FFNKVALATNATVLATGH 157 Query: 127 TFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 DD+ ++ +SG+ +P +R +++ + Sbjct: 158 NLDDEASRLFGNLLHWHDEYLAKNRPDLPAISGLAKK---------VKPLVRLTEKEMAA 208 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 + R I + +++ ++ + +I+ + K Sbjct: 209 YAFLRKIPYVVKECPHSIDAKQILFKKVLGEIEAASPGTK 248 >gi|205830648|sp|B2FU61|TTCA_STRMK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 306 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L + + A+++D + D +V + Sbjct: 48 AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 102 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + + V + + + R + +A+T T I H D Sbjct: 103 LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 162 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T +M LSGM + D + RP R DI + R Sbjct: 163 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGKHVVIRPLAYVRESDIVDYAQARQFPI 217 Query: 189 CEDPSNT 195 P N Sbjct: 218 I--PCNL 222 >gi|253688694|ref|YP_003017884.1| PP-loop domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259550629|sp|C6DJ78|TTCA_PECCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|251755272|gb|ACT13348.1| PP-loop domain protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R ++ +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284 >gi|254522955|ref|ZP_05135010.1| PP-loop domain protein [Stenotrophomonas sp. SKA14] gi|219720546|gb|EED39071.1| PP-loop domain protein [Stenotrophomonas sp. SKA14] Length = 287 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L + + A+++D + D +V + Sbjct: 29 AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 83 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + + V + + + R + +A+T T I H D Sbjct: 84 LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 143 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T +M LSGM + D + RP R DI + R Sbjct: 144 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGRHVVIRPLAYVRESDIVEYAQARQFPI 198 Query: 189 CEDPSNT 195 P N Sbjct: 199 I--PCNL 203 >gi|150402525|ref|YP_001329819.1| PP-loop domain-containing protein [Methanococcus maripaludis C7] gi|150033555|gb|ABR65668.1| PP-loop domain protein [Methanococcus maripaludis C7] Length = 311 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 20/188 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + + +SGG DS+ + L+ + K K AI V+ + D + C Sbjct: 48 KVAMGLSGGKDSLVMAHILNEFY--KQIPKSKILAIIVNEGIEGYRTDGIDAAVKFCEEH 105 Query: 81 RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 I + +V +K+ + R +++ + + Sbjct: 106 GIEYRIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDYLAIG 165 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD + V M +K L+ + ++ + +P + E++ Sbjct: 166 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKNPKFVKRIKPLEKIPEEEVLLIADLLE 222 Query: 186 ISWCEDPS 193 + + + P Sbjct: 223 LKYHKSPC 230 >gi|167585222|ref|ZP_02377610.1| PP-loop domain protein [Burkholderia ubonensis Bu] Length = 324 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 26/271 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS +L L + +R+ A++ Sbjct: 35 LFKRIVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 93 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +R+ + + + + + R + Sbjct: 94 LD-QKQPG---FPEHVLPEYLTRIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 149 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 150 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 205 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +R+ D F L Sbjct: 206 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 263 Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256 V ++ + + + ++ DI Sbjct: 264 AKVVPSHLMDTTLFPFTSLRATGEADPQGDI 294 >gi|167575096|ref|ZP_02367970.1| PP-loop family protein [Burkholderia oklahomensis C6786] Length = 331 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 30/236 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 + ++V +SGG DS LL L + +R+ A+++D + +V + Sbjct: 64 HGDKVMVCLSGGKDSYALLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 118 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + + + R ++ A + AT I H D Sbjct: 119 LATIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 178 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D L+T+ + KGM D D + RP + D+ + R Sbjct: 179 DILQTLLLNLFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELREFPII 234 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R ++ +R+ D K+F + NA+A ++P +L Sbjct: 235 --PCNLCGSQPNLKRAEMKALIREWD--------KRFPGRVENMFNALANVVPSHL 280 >gi|56708253|ref|YP_170149.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670724|ref|YP_667281.1| hypothetical protein FTF1187 [Francisella tularensis subsp. tularensis FSC198] gi|224457372|ref|ZP_03665845.1| hypothetical protein FtultM_06802 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370739|ref|ZP_04986744.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875073|ref|ZP_05247783.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597358|sp|Q5NFP3|TTCA2_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|123063441|sp|Q14H45|TTCA2_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|56604745|emb|CAG45820.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110321057|emb|CAL09203.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|151568982|gb|EDN34636.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254841072|gb|EET19508.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159480|gb|ADA78871.1| hypothetical protein NE061598_06875 [Francisella tularensis subsp. tularensis NE061598] Length = 251 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLGVSYEIETKNTYGVIIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|299068269|emb|CBJ39490.1| putative ATP pyrophosphatase [Ralstonia solanacearum CMR15] Length = 312 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 22/247 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS +L L ++ R+ K A+++D + ++V + ++ Sbjct: 34 VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + R +I AK + A I H DD + T Sbjct: 90 VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ G + M + D I RP C ++I ++ P Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCSEKEIAAYARAMEFPII--PC 202 Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N + +R +V+ + + + A F L+ V + +A + Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFASLQSVVPSHLADTDLFDFNGLTTGLA 262 Query: 251 AISQDIL 257 I ++ L Sbjct: 263 KIGEEAL 269 >gi|281419847|ref|ZP_06250846.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205] gi|281405974|gb|EFB36654.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205] Length = 253 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 19/196 (9%) Query: 1 MFLSPIESVRFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54 M + + ++ F + L IL+A+SGG DS+ L+ L + I+ Sbjct: 22 MMKAEQKVLKRFNKGCVDYHLLQDGDRILIALSGGKDSLELVRLLAQ-RARIYKPHIEVE 80 Query: 55 AISV--DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYAL 109 A + D + Y+ D C+ I ++ +++ P+ R Sbjct: 81 AAHIIMD-NIPYETDR--SYLQDFCAENGIKLHILHSSFDESTDPRKTRCFLCAWNRRKT 137 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + E A + I H DD L T+ M +G + L L I RP Sbjct: 138 LFEFAVSHGFNKIALGHHMDDILVTLLMNIT----FEGSHSTMQPSLPLKHYPLTIIRPL 193 Query: 170 LRCRREDIRSFLLQRN 185 DIR + + Sbjct: 194 CLVHEADIRQVAEELH 209 >gi|163782668|ref|ZP_02177665.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1] gi|159882241|gb|EDP75748.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1] Length = 303 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 20/228 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R +LV VSGG DS+ L L + + + + E ++ R Sbjct: 45 FRMFTNEDRVLVTVSGGKDSLALWHVLRKLGYNADGFYLHL-------GIGEYSERSRRK 97 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--REA--------RYALISEHAKTINATLI 122 V + RL VV + A REA RY + AK ++ Sbjct: 98 VEEFAERLGAKVIVVDLMEELAGIPELKKATSREACSVCGLVKRYN-FNRVAKEYGYNVV 156 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD+ ++ ++ K +G + + +PF + ++ + L Sbjct: 157 ATGHNLDDEASSLLANVI-NWNVKYLG-RKYPVLEEEEGFVRKVKPFCKFTEKETALYAL 214 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 I + E+ + + + + I+ K++ + + KV Sbjct: 215 LNGIEFVEEECPYSEDASSIFYKETLNRIEEKFPGTKLRFYLEYLRKV 262 >gi|225712776|gb|ACO12234.1| tRNA Ile-lysidine synthase [Lepeophtheirus salmonis] Length = 275 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 21/231 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISV 58 F +E++ F + +LV +SGG DS+ LL L + + + A++V Sbjct: 18 FKPFLEAMEQF-SMIKNGDRVLVCLSGGKDSLSLLHTLRQYRFYAKETNGIEFDLGAVTV 76 Query: 59 DHCLRETAKD-EVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISE 112 D + + R + L I + ++++ T + + + I Sbjct: 77 D----PGSDAYDPRPLIPYLEELDIHYLYEKQNIMAAALEADCTSICSYCSRMKRGRIYA 132 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ DD +E+ M + + + + + + +L + RPF+ Sbjct: 133 AARKEKYNVLAMGQHLDDLVESFIMSIFHNGRMR----TMKANYSVKEKDLRVIRPFVYV 188 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 R +R F + + P N FE + R + + L A L + Sbjct: 189 RESKLREFAQTKKLPII--PENCPACFESPKERHRTKQL-LAAQELLFPRL 236 >gi|269968427|ref|ZP_06182443.1| putative ATPase [Vibrio alginolyticus 40B] gi|269826975|gb|EEZ81293.1| putative ATPase [Vibrio alginolyticus 40B] Length = 265 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 20/189 (10%) Query: 16 LVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 1 MIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHIL 55 Query: 75 -DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + L I + +V R + A+ + AT + H Sbjct: 56 PEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKVGATKLALGH 115 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +ET+++ K M D + RP CR +D+ + ++ Sbjct: 116 HMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKDF 171 Query: 187 SWCEDPSNT 195 P N Sbjct: 172 PII--PCNL 178 >gi|197301463|ref|ZP_03166543.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC 29176] gi|197299501|gb|EDY34021.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC 29176] Length = 398 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D + + Sbjct: 153 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKF-DFEVKFLVMDPGYSPANRQVIE-- 209 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + RL I + + R + HA+ + I H +D Sbjct: 210 -ENAKRLEIPIEIFESDIFESVYNVEKSPCYLCARMRRGYLYSHAQKMGCNKIALGHHYD 268 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M Y+ + + + ++ + + RP R + I+++ ++ + Sbjct: 269 DVIETILMGML--YSAQFQTMMPKLHSTNFE-GMELIRPLYLVREDAIKAWRDYNDLHFI 325 >gi|154490820|ref|ZP_02030761.1| hypothetical protein PARMER_00737 [Parabacteroides merdae ATCC 43184] gi|154088568|gb|EDN87612.1| hypothetical protein PARMER_00737 [Parabacteroides merdae ATCC 43184] Length = 251 Score = 91.9 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 18/194 (9%) Query: 1 MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F E V+ + +V IL+ +SGG DS+ L+ L S + + Sbjct: 10 LFRKVEEKVKKAIFEYGLIVDGDRILIGLSGGKDSLALVDLLGR-RSKIFRPRFEVIVTH 68 Query: 58 V---DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALIS 111 + + R ++ Y+ ++ V ++ + R + Sbjct: 69 IVMSNIPYRS----DIDYLKSRADEHGLSFFVHETSFDASTDTRKSPCFLCSWTRRKALF 124 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + AK I H DD LET+ M +G + + ++ I RP Sbjct: 125 DIAKRHGCNKIALGHHQDDILETLLMNMI----HQGAIGTMPPRLKMDKFDMEIIRPMCL 180 Query: 172 CRREDIRSFLLQRN 185 +D+ + R Sbjct: 181 VEEKDLTRIAVWRG 194 >gi|327401576|ref|YP_004342415.1| PP-loop domain-containing protein [Archaeoglobus veneficus SNP6] gi|327317084|gb|AEA47700.1| PP-loop domain protein [Archaeoglobus veneficus SNP6] Length = 300 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 29/218 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L VSGG DS +L L + F + A+ +D + E +K ++ V ++C Sbjct: 46 RGEKVLACVSGGKDSSAMLGVLSRLSEKLDF---EVEALHIDLGIGEYSKKSMKTVEELC 102 Query: 78 SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I V+S + P+ A RY L++ +A+ ++ T HT +D Sbjct: 103 GVLGIKLHVISVAEFGFTIDDIPKKTCSACGIVKRY-LMNRYARLNGFDVVATGHTAEDI 161 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCE 190 + + L + T +D + RP ++ +++ R + + Sbjct: 162 ISFFFKNWLSGNFSWSEKL--LPRTESFDERIVTRIRPLYDRSEKENLLYVICRGLPFLL 219 Query: 191 DPSNTDDR----------------FERVRVRRFVRDID 212 D R F R V + ++ Sbjct: 220 DDCPHAPRDEWKEIVYYIESRKPGFRRNFVLNLAKYLE 257 >gi|294671331|ref|ZP_06736182.1| hypothetical protein NEIELOOT_03040 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306963|gb|EFE48206.1| hypothetical protein NEIELOOT_03040 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 311 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMMRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS L Sbjct: 251 ADTELFDFAGLKRGQNLKHGGDLAFDSETL 280 >gi|258405204|ref|YP_003197946.1| PP-loop domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797431|gb|ACV68368.1| PP-loop domain protein [Desulfohalobium retbaense DSM 5692] Length = 245 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 17/224 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VS 74 L A + +A SGG DS LL L S+ R I+ A+ ++ + E + ++ Sbjct: 28 LWPGARLGIAFSGGVDSWALLKIL-SIYRKRLPFPIEMLALHIN----PGFEPENHFPLA 82 Query: 75 DVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 D + I + R + + + N T + HT Sbjct: 83 DWLHKHGIPGHLECLDIGPRAHTAENRTNSPCFWCSLQRRKRLFQLCQDYNLTHLAFGHT 142 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD + T +M + +GM + L + RP L + I + Sbjct: 143 SDDLVNTFFMNLTTNGRIEGM----YPKESFFQGTLEVIRPLLWIDKFQIERAARAWELP 198 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 +P + R V++++ + ++ LR N Sbjct: 199 VVPNPCPSAQNSRRGEVQQWLETLWGQDKRIRKNIVSALRRWQN 242 >gi|90578588|ref|ZP_01234398.1| putative ATPase [Vibrio angustum S14] gi|90439421|gb|EAS64602.1| putative ATPase [Vibrio angustum S14] Length = 297 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ + I F ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNL---KKAAPINFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVV-----SWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125 + S L I + +V S K + G R + A+ I AT I Sbjct: 87 LPEYFSSLNIPYYIVDKDTYSVVKEKVEEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLSYCREKDLIKYAEHKA 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|149925083|ref|ZP_01913396.1| PP-loop [Plesiocystis pacifica SIR-1] gi|149814054|gb|EDM73685.1| PP-loop [Plesiocystis pacifica SIR-1] Length = 287 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 20/221 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 H++VAVSGG DS LL L + R+ + +A+ +D ++ ++ D Sbjct: 31 GDHVMVAVSGGKDSYTLLDLLV-LARSRAPIDFQITAVHLD-QVQPGYDGSPLRTWLEDF 88 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 R ++ + + P A R ++ A+ + I H D Sbjct: 89 RGRTKVDFEIAQEDTYTTVVDLTPPGKAYCAVCSRLRRGVLYNVAERLGCNKIALGHHRD 148 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LET+ M + M D + ++ + RP + C DI Sbjct: 149 DALETLLMNLFYAGKLQAMPAKYTTDDVRFE----VIRPLIECAEADIIEHASWAKYPIL 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D R ++RR + D+ +++ +R Sbjct: 205 --PCNLCGSQDNLRREKMRRLIDDMATDNPHVRAVMLNAVR 243 >gi|326560307|gb|EGE10695.1| PP-loop family protein [Moraxella catarrhalis 7169] gi|326562977|gb|EGE13256.1| PP-loop family protein [Moraxella catarrhalis 46P47B1] gi|326566375|gb|EGE16525.1| PP-loop family protein [Moraxella catarrhalis BC1] gi|326570184|gb|EGE20229.1| PP-loop family protein [Moraxella catarrhalis BC8] gi|326570922|gb|EGE20946.1| PP-loop family protein [Moraxella catarrhalis BC7] gi|326575882|gb|EGE25805.1| PP-loop family protein [Moraxella catarrhalis CO72] gi|326576347|gb|EGE26256.1| PP-loop family protein [Moraxella catarrhalis O35E] Length = 377 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 27/253 (10%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F ++ ++ V +SGG DS LL L + + I F ++V+ + Sbjct: 70 AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124 Query: 66 AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116 +EV RY+S+ I + ++ +A R + AK Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I AT + H DD L T ++ + K M + D D + RP +D Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I + + P N + R + D+ K+ + + N Sbjct: 237 IIRYANYKKFPII--PCNLCGS-QENLQRAMINDMLREWDNAHPKRLASMFKALQNVAPS 293 Query: 237 LIPKYLTVHMRSI 249 + + Sbjct: 294 QLADRNLFDFEHL 306 >gi|90420934|ref|ZP_01228839.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans SI85-9A1] gi|90334909|gb|EAS48681.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans SI85-9A1] Length = 305 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 28/235 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 A LV +SGG DS LL L + R + A ++D + ++V D Sbjct: 71 PGARWLVGLSGGKDSYALLALLSDLKY-RGLLPVDILACNLDQG-QPN---FPKHVLPDF 125 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 SR I H + V + A R + A+ ++ H D Sbjct: 126 LSRYDIPHRIEYRDTYSVVTEKVPSNATYCALCSRLRRGNLYRIAREEGCEALVLGHHAD 185 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISW 188 D LET +M LS M ++ D L + RP +R EDI F Sbjct: 186 DCLETFFMNLFHGGR-----LSAMPAKLINDEGDLMVLRPLIRSVEEDIAKFSAAMKFPI 240 Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 D + D +R ++ + D++ ++F + + A+A + P +L Sbjct: 241 IPCDLCGSQDGLQRNVTKQMIADLE--------RRFPGRKQVMLRALANVRPGHL 287 >gi|330255306|gb|AEC10400.1| cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] Length = 358 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 21/222 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +S+D Sbjct: 52 FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 110 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + +VS+K+ R + Sbjct: 111 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 170 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 171 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFN 228 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 + + + + R R F++D++ Sbjct: 229 FT-------YAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 263 >gi|260778673|ref|ZP_05887565.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus ATCC BAA-450] gi|260604837|gb|EEX31132.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus ATCC BAA-450] Length = 310 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 87/267 (32%), Gaps = 42/267 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 I+V +SGG DS +L L S+ I FS I+V+ H L E Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKS---APINFSLIAVNLDQKQPGFPGHILPE---- 92 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121 L + + +V + R ++ A + AT Sbjct: 93 -------YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTANELGATK 145 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180 I H DD LET+++ KG M ++ D + RP CR +DI F Sbjct: 146 IALGHHRDDILETLFLNMFHGGKMKG-----MPPKLVSDNGEHVVIRPLAYCREKDIIKF 200 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R P N +R +++ + D D F+ ++ V + +A Sbjct: 201 SDMRGYPII--PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIESMFRAMQNVVPSHLADH 258 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 + I+ + D + Sbjct: 259 ELFDFKSIDKDSGVINGGDIGFDKEEM 285 >gi|332184252|gb|AEE26506.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida 3523] Length = 253 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S I D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQEGDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|45358919|ref|NP_988476.1| PP-loop domain-containing protein [Methanococcus maripaludis S2] gi|45047785|emb|CAF30912.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 314 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 20/188 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + + +SGG DS+ + L+ + AI V+ + D + C Sbjct: 51 KVAMGLSGGKDSLVMAYLLNEYY--KQIPNSNLIAIMVNEGIEGYRTDGIDAAVKFCEEY 108 Query: 81 RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 I + +V +K+ + R +++ + + Sbjct: 109 GIEYKIVHFKDYLGTNLDEIVKIAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDFLAIG 168 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD + V M +K L+ + ++ + + +P + +++ Sbjct: 169 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIPEDEVLLLAEMLE 225 Query: 186 ISWCEDPS 193 + + + P Sbjct: 226 LKYHKSPC 233 >gi|119503153|ref|ZP_01625237.1| Pyridoxamine 5'-phosphate oxidase [marine gamma proteobacterium HTCC2080] gi|119460799|gb|EAW41890.1| Pyridoxamine 5'-phosphate oxidase [marine gamma proteobacterium HTCC2080] Length = 310 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 20/228 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L ++ D + + A+++D + +EV Sbjct: 66 GDRIMVCLSGGKDSYAMLDILLNL-RDCAPINFELIAVNLD-QKQPDFPEEVLP--SYLE 121 Query: 79 RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + ++ + R + A+ I A+ I H DD Sbjct: 122 ELGVPYYILERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAEQIGASKIALGHHRDDI 181 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ K M + D D + RP C+ DI + + Sbjct: 182 VETLFLNLFFAGKLKAMPPKLLSD----DRKNVVIRPMAYCKEADIAQYAKAKAFPII-- 235 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N +R ++ ++ + F+ LR + +A Sbjct: 236 PCNLCGSQTNLQRQEIKHMLQGWEGQYPGRIETIFKALRSVSPSQLAD 283 >gi|167626278|ref|YP_001676778.1| hypothetical protein Fphi_0057 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205830350|sp|B0TY35|TTCA1_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|167596279|gb|ABZ86277.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 256 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 20/205 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 29 KGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQLRKYL 84 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L +++ + V + R I +AK I+ H DD Sbjct: 85 DNLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +E++ M +G S I D + RP + + D+ F + N Sbjct: 145 LIESLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII- 199 Query: 191 DPSNT---DDRFERVRVRRFVRDID 212 P N + +R +V++ ++D+ Sbjct: 200 -PCNLCGSQENLKRKKVKKLIQDLA 223 >gi|15789499|ref|NP_279323.1| hypothetical protein VNG0190C [Halobacterium sp. NRC-1] gi|169235215|ref|YP_001688415.1| hypothetical protein OE1318F [Halobacterium salinarum R1] gi|10579837|gb|AAG18803.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726281|emb|CAP13062.1| conserved hypothetical protein [Halobacterium salinarum R1] Length = 320 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 67/186 (36%), Gaps = 19/186 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 P ++ +SGG DS L + R +++ A+++ + + + + + + Sbjct: 53 PETWVIGLSGGKDSAVLTDLIEETF--RDDPRVELIALTIHEGIAGYRDESLDACTTLAA 110 Query: 79 RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 I H +V+++ A R L++++A +A ++T H Sbjct: 111 DRDIRHELVTYREEFDVAMDDVADDDPLDMAPCAYCGVFRRDLLAKYADEYDADKLLTGH 170 Query: 127 TFDDQLETVYMRSQRDYAEKG-----MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 DD+ ET M + L D D + ++P +++ + Sbjct: 171 NLDDEAETALMNILEGNVTQIATHFDASLGSFDDRAELDAMIPRAKPLRDIPEKEVALYA 230 Query: 182 LQRNIS 187 R++ Sbjct: 231 QLRDLP 236 >gi|254509242|ref|ZP_05121337.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16] gi|219547833|gb|EED24863.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16] Length = 265 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 20/189 (10%) Query: 16 LVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 ++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 1 MIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHIL 55 Query: 75 -DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 D L I + +V R + A+ I AT + H Sbjct: 56 PDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALGH 115 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +ET+++ K M D + RP CR +D+ + + Sbjct: 116 HMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKAF 171 Query: 187 SWCEDPSNT 195 P N Sbjct: 172 PII--PCNL 178 >gi|271500278|ref|YP_003333303.1| PP-loop domain-containing protein [Dickeya dadantii Ech586] gi|270343833|gb|ACZ76598.1| PP-loop domain protein [Dickeya dadantii Ech586] Length = 313 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 88/270 (32%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + + + +V + R ++ A + Sbjct: 84 --FPEHVLPQYLDSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 AT I H DD L+T+++ G L GM ++ D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMF-----YGGKLKGMPPKLVSDDGKHVVIRPLAYCREKDI 196 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 F R P N +R ++ +RD D F ++ V + + Sbjct: 197 ERFAEARQFPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHL 254 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + L D + Sbjct: 255 CDTALFDFKSIRQGSAVVDGGDLAFDREEM 284 >gi|168704844|ref|ZP_02737121.1| tRNA(Ile)-lysidine synthetase-like protein [Gemmata obscuriglobus UQM 2246] Length = 155 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M E+ RF +V VSGG+DS+ LL AL S + V+H Sbjct: 1 MTRVLREARRFAAGRAGAG---IVGVSGGADSVALLRALRS-------ADVTLVVAHVNH 50 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTI 117 LR + + +V ++C+ L + V+S + P L + AR RY + A + Sbjct: 51 RLRGAESDGDEAFVRELCAGLGLECRVLSADVAALPPGDTLDSTARRVRYEFFARFAGAV 110 Query: 118 NA 119 A Sbjct: 111 GA 112 >gi|326563609|gb|EGE13861.1| PP-loop family protein [Moraxella catarrhalis 103P14B1] gi|326565320|gb|EGE15500.1| PP-loop family protein [Moraxella catarrhalis 12P80B1] gi|326573216|gb|EGE23184.1| PP-loop family protein [Moraxella catarrhalis 101P30B1] Length = 377 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 27/253 (10%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F ++ ++ V +SGG DS LL L + + I F ++V+ + Sbjct: 70 AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124 Query: 66 AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116 +EV RY+S+ I + ++ +A R + AK Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I AT + H DD L T ++ + K M + D D + RP +D Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 I + + P N + R + D+ K+ + + N Sbjct: 237 IIRYANYKKFPII--PCNLCGS-QENLQRAMINDMLREWDNAHPKRLASMFKALQNVAPS 293 Query: 237 LIPKYLTVHMRSI 249 + + Sbjct: 294 QLADRNLFDFEHL 306 >gi|237810522|ref|YP_002894973.1| PP-loop family protein [Burkholderia pseudomallei MSHR346] gi|237504914|gb|ACQ97232.1| PP-loop family protein [Burkholderia pseudomallei MSHR346] Length = 331 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + + ++V +SGG DS LL L + +R+ A++ Sbjct: 44 LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD ++T+ + KGM D D + RP Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ + R P N +R ++ +RD D K+F Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264 Query: 227 RVKVNNAVAMLIPKYL 242 + NA+A ++P +L Sbjct: 265 VDNMFNALANVVPSHL 280 >gi|153839797|ref|ZP_01992464.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ3810] gi|149746686|gb|EDM57674.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ3810] Length = 297 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKF ++V+ L + ++ Sbjct: 32 NMIEECDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT + Sbjct: 87 LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + ++ Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|299116896|emb|CBN75006.1| conserved unknown protein [Ectocarpus siliculosus] Length = 471 Score = 91.5 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 38/260 (14%) Query: 33 MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92 M L AL + R + I +D+ R + E +V C+R + + Sbjct: 1 MALCRALVHL---RPVYGFEVVGIHIDYGNRHESGREADFVQGWCARHGVVFYKRAIGEV 57 Query: 93 KPQTGL----MAAAREARY----ALISEHAKTINAT----------------------LI 122 + ARE R+ A + +K N+ + Sbjct: 58 RRGVTARDEYEKVAREIRFDAYKAALGGRSKDGNSDGNSDGNEGGGKEEKGEGGGGRPAV 117 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 M H D E V + + + L+GM + + RP L ++ + F Sbjct: 118 MFGHHEGDVEENVLTNLIKGCSI--LELAGMSPENTV-NGVRVWRPMLPFGKDVVYDFAH 174 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 + + + +D + + R ++RR + + + + ++ + L+ + L Sbjct: 175 KFGVPYFKDTTPSWS--TRGKLRRQLIPMMEDVFGSGVLGHLSAVARESDDLRDLVHREL 232 Query: 243 TVHMRSIIAISQDILNIDST 262 + L +D Sbjct: 233 FQPVWDKAVTQPLGLRLDVE 252 >gi|89076564|ref|ZP_01162872.1| putative ATPase [Photobacterium sp. SKA34] gi|89047756|gb|EAR53355.1| putative ATPase [Photobacterium sp. SKA34] Length = 297 Score = 91.5 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ + I F ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNL---KKAAPINFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVV-----SWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125 + S L I + +V S K + G R + A I AT I Sbjct: 87 LPEYFSSLNIPYYIVDKDTYSVVREKVEEGKTTCGLCSRLRRGTLYSFADKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLSYCREKDLIKYAEHKA 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|167395467|ref|XP_001741539.1| hypothetical protein [Entamoeba dispar SAW760] gi|165893874|gb|EDR21992.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 252 Score = 91.5 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 26/184 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRY 72 I++ SGG DS L+ L ++ + +F I A+ V + L ++ Sbjct: 35 PHDRIIIGFSGGKDSFLLVHVLSTLSKNVNFP-IDVVAVHVTNPQVGYQL------DLEQ 87 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAA---------AREARYALISEHAKTINATLIM 123 +C + + + P++ + A + R + + AK T I Sbjct: 88 SKTICESFGVPFISLQSEQM-PESDIEDADKSTTFCLNCGKNRRRALLKFAKENGFTSIA 146 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD ET+ M G + + RP + I+ + Sbjct: 147 LGHHMDDVAETLLMNQL----FCGCIATIPAQFTTEKYGVKFIRPLIEVPVVLIQEWTKY 202 Query: 184 RNIS 187 + Sbjct: 203 IELP 206 >gi|95928919|ref|ZP_01311664.1| PP-loop [Desulfuromonas acetoxidans DSM 684] gi|95134820|gb|EAT16474.1| PP-loop [Desulfuromonas acetoxidans DSM 684] Length = 251 Score = 91.5 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 19/218 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRY 72 ILVA+SGG DS +L L + R+ + ++++ E + Sbjct: 28 DRILVAISGGKDSWTMLHVLKELCR-RAPIHYELVPVTINPGFDGFDTATITHYLTEQGF 86 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + V + +P + A R + A+ + + H DD + Sbjct: 87 TAHLETTNG---EEVINAHLRPGSSYCAFCARLRRGALYTTAQKLGCNKVALGHHLDDHI 143 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCED 191 ET+ + G +S M +L D + RP + I + RNI + Sbjct: 144 ETLLLNQF----YSGT-ISAMSPKLLADNGEQTVIRPLVYVEEHLIDQWTALRNIPRVDC 198 Query: 192 PSNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDLR 227 R + R R++ + ++ +K +R Sbjct: 199 SCPMLVRRDQKRQRMKVLIEELQGEIPQIKNSLLNAMR 236 >gi|260432494|ref|ZP_05786465.1| PP-loop domain containing protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416322|gb|EEX09581.1| PP-loop domain containing protein [Silicibacter lacuscaerulensis ITI-1157] Length = 297 Score = 91.5 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 P LV +SGG DS LL L+ + R + A ++D + + + Sbjct: 52 KPPRWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 107 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 R+ + H + + A R + A+ + ++ H DD Sbjct: 108 ERMGVPHRIEYQDTYSIVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 167 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189 LET +M G + + + +L++ RP D F N Sbjct: 168 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCEKFAKAMNYPIIP 223 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 D + D +R +V++ + + ++ + F+ L Sbjct: 224 CDLCGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRALTNA 263 >gi|238753582|ref|ZP_04614944.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia ruckeri ATCC 29473] gi|238708134|gb|EEQ00490.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia ruckeri ATCC 29473] Length = 315 Score = 91.5 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 S++ +++A SGG DS +L L + + IKF ++V+ L + ++ Sbjct: 50 SMIEENDVVMACMSGGKDSFAMLDILLGL---KKVAPIKFEVVAVN--LDQKQPGFPEHI 104 Query: 74 S-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 105 LPEYFESLNIPYYIVDKDTYSVVKEKIPAGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 164 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + ++ Sbjct: 165 HHLDDIVETLFLNIFHGARLKAM----PPKLRSDDGRNVVIRPLAYCREKDLIEYAEHKD 220 Query: 186 ISWCEDPSNT 195 P N Sbjct: 221 FPII--PCNL 228 >gi|323698543|ref|ZP_08110455.1| PP-loop domain protein [Desulfovibrio sp. ND132] gi|323458475|gb|EGB14340.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132] Length = 305 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 20/202 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E+ + + ILVA+SGG DS+ L++ L + + +D Sbjct: 30 FTKQVETAIRREKMFTHEDRILVALSGGKDSLALMLELK-------LQGYDVTGLHIDLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---------PQTGLMAAAREARYALISE 112 + +++ R V D C+ + V + + A + + + Sbjct: 83 IPNSSEKARRKVEDFCTLHGLPLRVFEMAAWGLPIPDVKKYVKRPVCAVCGKMKRHHFNR 142 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171 A ++ T H DD++ ++ + R LS + + +P R Sbjct: 143 IAVEEGFDVLATGHNLDDEVARLFANTLR---WDTAYLSDQGPVLPASEGFVRKVKPLFR 199 Query: 172 CRREDIRSFLLQRNISWCEDPS 193 + ++ + I DP Sbjct: 200 LSEYETANYAFLKGIEIHSDPC 221 >gi|300723510|ref|YP_003712815.1| putative ATPase [Xenorhabdus nematophila ATCC 19061] gi|297630032|emb|CBJ90667.1| putative ATPase [Xenorhabdus nematophila ATCC 19061] Length = 297 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ IKFS ++V+ L + YV Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFSVVAVN--LDQKQPGFPEYV 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 L I + +V R + A+ I AT + Sbjct: 87 LPQYFESLDIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKVALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR D+ + + Sbjct: 147 HHLDDIVETLFLNMFHGARMKAM----PPKLRSDDGRNVVIRPLAYCRETDLIDYAEHKA 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|90415029|ref|ZP_01222989.1| Putative ATPase [Photobacterium profundum 3TCK] gi|90323843|gb|EAS40449.1| Putative ATPase [Photobacterium profundum 3TCK] Length = 299 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 23/187 (12%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ + +++A SGG DS +L L + IKF I+V+ L + ++ Sbjct: 32 NMIEESDVVMACISGGKDSFAMLDILLGLQKS---APIKFKVIAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 87 LPNYFESLGIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K S D + RP CR +D+ ++ Sbjct: 147 HHMDDMVETMFLNMFYGSRLK----SMPPKLRSDDQRNVVIRPLTYCREKDLIAYAE--- 199 Query: 186 ISWCEDP 192 + E P Sbjct: 200 --YREYP 204 >gi|283852152|ref|ZP_06369425.1| PP-loop domain protein [Desulfovibrio sp. FW1012B] gi|283572378|gb|EFC20365.1| PP-loop domain protein [Desulfovibrio sp. FW1012B] Length = 302 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 20/198 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E+ + +LVAVSGG DS+ L+ L + D + V Sbjct: 30 FRKQVETAIRRHAMIQPGEKVLVAVSGGKDSLALMRVLSDLGHD-------VDGLHVHLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112 + +++ C V+ + + A + + + Sbjct: 83 IPDSSDPVCERTESYCRDNGFRLHVLRTAEVGLAIPKVKDAVRRPICAVCGKIKRHYFNR 142 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171 A + T H DD++ ++ R L T+ + + +P R Sbjct: 143 FAYENGYAALATGHNLDDEVARLFANVLR---WDATYLGSQGPTLPAEGRFVRKIKPLYR 199 Query: 172 CRREDIRSFLLQRNISWC 189 + ++ + I Sbjct: 200 VTEFETAAYCFLKGIDHW 217 >gi|89068158|ref|ZP_01155575.1| hypothetical protein OG2516_08252 [Oceanicola granulosus HTCC2516] gi|89046397|gb|EAR52454.1| hypothetical protein OG2516_08252 [Oceanicola granulosus HTCC2516] Length = 283 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 19/250 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R ++ A ++D + + + Sbjct: 44 RGAKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVELLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + H + + A R + A+ + ++ H DD Sbjct: 100 EKMGVPHRIEYQDTYSIVVDKVPAGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189 LET +M G + + + +L++ RP D F N Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCERFASAMNYPIIP 215 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 D + D +R +V++ + + ++ + F R +N + L+ L Sbjct: 216 CDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMF---RALMNARPSHLLDPKLFDFAGLT 272 Query: 250 IAISQDILNI 259 +DIL++ Sbjct: 273 RGTGEDILDL 282 >gi|312281579|dbj|BAJ33655.1| unnamed protein product [Thellungiella halophila] Length = 253 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 14/190 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + SGG DS L L + + R + +S+D Sbjct: 45 FEEEIHQVIVVNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHSYGLDLFLLSIDEG 103 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110 + D + V + + ++S+K+ R + Sbjct: 104 ITGYRDDSLETVKRNELQYGLPLQILSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 163 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 A + ++T H DD ETV + R + T D + +PF Sbjct: 164 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 221 Query: 171 RCRREDIRSF 180 ++I + Sbjct: 222 YTYEKEIVIY 231 >gi|170290828|ref|YP_001737644.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum cryptofilum OPF8] gi|170174908|gb|ACB07961.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum cryptofilum OPF8] Length = 328 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 22/191 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKDEVR 71 R L+ ++VA SGG DS L+ + +K ++++D R ++ + Sbjct: 42 RELLPGDKVMVAHSGGKDSSLALLLTKEFSDEVRELDLKVISVTLDEGTLYRRSS---IE 98 Query: 72 YVSDVCSRLRIAHSVVSWKN--------------SKPQTGLMAAAREARYALISEHAKTI 117 + RLR+ H + ++ + R +++ A+ I Sbjct: 99 LARKLAERLRVRHLTIQMRDILGFSLEDLRLAIPKGWKRNACTYCGVLRRQILNAVAREI 158 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRED 176 AT+++T H DD ++T M R A + M Y+ L RP + Sbjct: 159 GATVLVTGHNLDDLIQTSIMNLVRGDANAL--VKTMRHERKYEEGLVPRVRPLKYVYERE 216 Query: 177 IRSFLLQRNIS 187 I S ++ I Sbjct: 217 IASLVVALGIP 227 >gi|222618797|gb|EEE54929.1| hypothetical protein OsJ_02482 [Oryza sativa Japonica Group] Length = 501 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 21/212 (9%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L P + + SGG DS L L + + R + +SVD + D + V Sbjct: 200 NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NHRHKYCLDLFLLSVDEGITGYRDDSLETV 258 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 + + ++S+K+ + R + A + I Sbjct: 259 KRNEIQYGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 318 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SF 180 +T H DD ETV + R + + + T D + +PF ++I + Sbjct: 319 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 376 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 +I C N + R R F++D++ Sbjct: 377 YAISHIFSCIYSPNA---Y-RGFAREFIKDLE 404 >gi|239624850|ref|ZP_04667881.1| PP-loop domain-containing protein [Clostridiales bacterium 1_7_47_FAA] gi|239521236|gb|EEQ61102.1| PP-loop domain-containing protein [Clostridiales bacterium 1_7_47FAA] Length = 290 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 21/191 (10%) Query: 10 RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FVR L + V +SGG DSM L L + S + I +D Sbjct: 24 RPFVRGLQEYKMIQDGDKVAVCISGGKDSMLLAKCLQQLKRQ-SGTEFGLEFIVMDPGYH 82 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + + + D + + I + R + HA+ + Sbjct: 83 PDNR---KLIEDNAALMNIPVRIFDSDIFDIVVDVDQSPCYLCARMRRGYLYAHARELGC 139 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177 I H FDD +ET+ M G ++ M + + + RP + EDI Sbjct: 140 NKIALGHHFDDVIETILMGIL-----YGGQINTMMPKLHSTNFEGMELIRPLYFVKEEDI 194 Query: 178 RSFLLQRNISW 188 + + + Sbjct: 195 LDWKDYNGLHF 205 >gi|145298953|ref|YP_001141794.1| C32 tRNA thiolase [Aeromonas salmonicida subsp. salmonicida A449] gi|205830594|sp|A4SMC4|TTCA_AERS4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|142851725|gb|ABO90046.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 302 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 22/205 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + +V + Sbjct: 37 GDKIMVCLSGGKDSFAMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPEHVLPEYL 91 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + +V K+ P+ A R ++ A+ + T I H DD Sbjct: 92 ATLGVDFKIVEEDTYSIVKDKVPEGKTTCALCSRLRRGILYRTAQELGCTKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K S + D + RP C+ +D+ + + Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLVRYAEVKAFPII- 206 Query: 191 DPSNT---DDRFERVRVRRFVRDID 212 P N + +R +++ ++D D Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQDWD 230 >gi|187479696|ref|YP_787721.1| C32 tRNA thiolase [Bordetella avium 197N] gi|123513648|sp|Q2KU24|TTCA_BORA1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|115424283|emb|CAJ50836.1| conserved hypothetical protein [Bordetella avium 197N] Length = 315 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 20/222 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ R+ + + A+++D + ++ + S Sbjct: 46 GDRVMVCLSGGKDSYAMLDILMALQK-RAPFRFELIAVNLD-QKQPGFPADILP--NYLS 101 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + + + + + R ++ A + AT I H DD Sbjct: 102 SLGVPFHIETQDTYSIVTRVLAEGKTMCSLCSRLRRGILYRVADELGATKIALGHHRDDI 161 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T+++ KGM + D + RP D+ ++ + Sbjct: 162 LGTLFLNLFYGGKLKGM----PPKLVSDDGRHTVIRPLAYIAETDLIAYAELKQFPII-- 215 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R V++ D F L V Sbjct: 216 PCNLCGSQENLKRKEVSRMVQEWDRKFPGRSWNVFNALSRVV 257 >gi|71279129|ref|YP_269674.1| PP-loop family protein [Colwellia psychrerythraea 34H] gi|123632054|sp|Q47ZU5|TTCA_COLP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71144869|gb|AAZ25342.1| PP-loop family protein [Colwellia psychrerythraea 34H] Length = 314 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 31/249 (12%) Query: 1 MFLSPIESVRFFVRSLVY-------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53 F+ + +R V + ++V +SGG DS +L L +L + + Sbjct: 20 QFIKLEKKLRRNVGQAIAQYNMIEDGDKVMVCLSGGKDSYAMLSILM-LLKESAPIHFDI 78 Query: 54 SAISVDHCLRETAKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREA 105 A+++D + ++ + +L I + +V + Sbjct: 79 IAVNLD-QKQPG---FPEHILPEYLDKLGIEYHIVEEDTYGIVKEKVPEGKTTCSLCSRL 134 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW- 164 R A++ + AK I AT I H DD +ET+ + G + M ++ D Sbjct: 135 RRAVLYKAAKKIGATKIALGHHRDDMIETLMLNMF-----YGGKMKAMPAKLVSDNGEHV 189 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMK 221 + RP C+ ++ + ++ P N +R ++R + D Sbjct: 190 VIRPLAFCKESELIQYSELKHFPII--PCNLCGSQPNMQRQNIKRMLNDWHDQFPGRIES 247 Query: 222 KFQDLRVKV 230 F ++ V Sbjct: 248 MFTAMQNVV 256 >gi|167567472|ref|ZP_02360388.1| PP-loop family protein [Burkholderia oklahomensis EO147] Length = 331 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 30/236 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 + ++V +SGG DS LL L + +R+ A+++D + +V + Sbjct: 64 HGDKVMVCLSGGKDSYALLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 118 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + + + R ++ A + AT I H D Sbjct: 119 LATIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 178 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D L+T+ + KGM D D + RP + D+ + R Sbjct: 179 DILQTLLLNLFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELRAFPII 234 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242 P N +R ++ +R D K+F + NA+A ++P +L Sbjct: 235 --PCNLCGSQPNLKRAEMKALIRQWD--------KRFPGRVENMFNALANVVPSHL 280 >gi|326392440|ref|ZP_08213837.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991517|gb|EGD50112.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 87 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M I +++ + + + I++ VSGG DS+ +L L+++ + +K + V+H Sbjct: 1 MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56 Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS 85 +R E AK + ++V D+C +L++ Sbjct: 57 MIRGEEAKRDAQFVEDMCRKLKLPFF 82 >gi|269139128|ref|YP_003295829.1| C32 tRNA thiolase [Edwardsiella tarda EIB202] gi|267984789|gb|ACY84618.1| C32 tRNA thiolase [Edwardsiella tarda EIB202] gi|304559054|gb|ADM41718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Edwardsiella tarda FL6-60] Length = 311 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 19/267 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + ++V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-NFTLVAVNLD-QKQPGF 84 Query: 67 KDEV--RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + V Y+ RI +V K + +T + R ++ A + Sbjct: 85 PETVLPAYLETQGVEYRIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTANELRCN 143 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD LET+++ KGM M D D + RP CR +DI F Sbjct: 144 KIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + P N +R ++ +RD D F ++ V + +A Sbjct: 200 AAAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSAMQNVVPSHLADG 257 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 + I L D + Sbjct: 258 ALFDFKGLQQGGEIIDGGDLAFDRQTI 284 >gi|225023480|ref|ZP_03712672.1| hypothetical protein EIKCOROL_00338 [Eikenella corrodens ATCC 23834] gi|224943720|gb|EEG24929.1| hypothetical protein EIKCOROL_00338 [Eikenella corrodens ATCC 23834] Length = 317 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 82/256 (32%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + + + A+++D + +V + Sbjct: 35 GDKIMVCLSGGKDSYALLDILRHLQASAPI-NFELVAVNLD-QKQPG---FPEHVLPEYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + R ++ AK + T I H DD Sbjct: 90 TSIGVPFKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAEIKQFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V ++D D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVVGEMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLQ 262 Query: 247 RSIIAISQDILNIDST 262 R L DS Sbjct: 263 RGQTLKHGGDLAFDSE 278 >gi|124265747|ref|YP_001019751.1| C32 tRNA thiolase [Methylibium petroleiphilum PM1] gi|205830603|sp|A2SD77|TTCA_METPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|124258522|gb|ABM93516.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 313 Score = 91.1 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 17/180 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V VSGG DS LL L ++ I FS ++V+ L + D +V + Sbjct: 45 PGDKLMVCVSGGKDSYALLDILLNLQQR---APIDFSLVAVN--LDQKQPDFPEHVLPEY 99 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + + + + R ++ A + AT I H D Sbjct: 100 LASRGVPFHIENQDTYSIVKRVVPEGKTMCSLCSRLRRGILYRVAGELGATKIALGHHRD 159 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D L+T+++ KGM + D + RP D+ ++ R Sbjct: 160 DMLQTLFLNMFFGAKLKGM----PPKLVSDDGRHVVIRPLAYVPEHDLEAWAAHRQFPII 215 >gi|82701643|ref|YP_411209.1| hypothetical protein Nmul_A0509 [Nitrosospira multiformis ATCC 25196] gi|123545035|sp|Q2YBQ4|TTCA_NITMU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|82409708|gb|ABB73817.1| tRNA s(2)C-32 sulfurtransferase [Nitrosospira multiformis ATCC 25196] Length = 298 Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 22/206 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L S+ + + + + A+++D + +V + Sbjct: 39 SGDRVMVCLSGGKDSYALLDILRSLQA-HAATQFELIAVNLD-QKQPG---FPEHVLPNY 93 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + +V + R ++ A + AT I H D Sbjct: 94 LTSIGMPFRIVEQDTYSVVKRLIPEGKTTCSLCSRLRRGVLYRVADELGATKIALGHHRD 153 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188 D LET+ + L M ++ D I RP C+ +D+ ++ N Sbjct: 154 DILETLLLNLFHGGK-----LKTMPPKLVSDDGKHIVIRPLAYCKEKDLAAYAEMENFPI 208 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214 P N ++ R+ V+++ Sbjct: 209 I--PCNLCGS-QKNMQRQVVKEMLQQ 231 >gi|89094039|ref|ZP_01166983.1| hypothetical protein MED92_02041 [Oceanospirillum sp. MED92] gi|89081713|gb|EAR60941.1| hypothetical protein MED92_02041 [Oceanospirillum sp. MED92] Length = 320 Score = 90.7 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 24/243 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 ++V +SGG DS +L L ++ + A+++D + ++V Y+ + Sbjct: 53 GDKVMVCLSGGKDSYAMLDILMNLQRSAPV-NFELVAVNLD-QKQPGFPEDVLPAYLESI 110 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + V + A R + A+ I A I H D Sbjct: 111 ----GVPFHILERDTYSVVKEVVPEGKTTCALCSRLRRGSLYGFAEEIGANKIALGHHRD 166 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LET+++ K S + D + RP R +DI +F + Sbjct: 167 DILETLFLNMFYGGKLK----SMPPKLVSDDGKNMVIRPLAYSREKDIAAFAELKGFPII 222 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N + +R ++ ++D D F+ L+ V + +A Sbjct: 223 --PCNLCGSQENLQRQVIKEMLQDWDRRFPGRIETMFRSLQHVVPSHLADTALFDFKGLQ 280 Query: 247 RSI 249 Sbjct: 281 HGF 283 >gi|253742438|gb|EES99271.1| PP family ATPase [Giardia intestinalis ATCC 50581] Length = 301 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 25/226 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDVC 77 + +A+SGG DS LL L + +KF+ I +V+ + + + Sbjct: 64 DRVALALSGGKDSWTLLHILLDIAKR---SPVKFTVIPMTVETGYPGFDANVAKLTQYIK 120 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I H V+ N + T + R + + + + H +D Sbjct: 121 ENLGIEHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTRCQKLGINKLALGHHRED 180 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 E++ M + G + N+ + RP + C ED ++ Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNA----EKNITLIRPMVFCAEEDTIAYARHSTFPIVT 236 Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQDLR 227 P + R ++ R+++ DI L + FQ ++ Sbjct: 237 CNCPHEGNKEHRRYKIKQTILAMRQWIPDIQRSILAGATELFQVMQ 282 >gi|294878153|ref|XP_002768284.1| hypothetical protein Pmar_PMAR025097 [Perkinsus marinus ATCC 50983] gi|239870532|gb|EER01002.1| hypothetical protein Pmar_PMAR025097 [Perkinsus marinus ATCC 50983] Length = 484 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 23/235 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDEVRYVSDV 76 +++++SGG DS LI L ++ R K A+ + + L + A+ E+ V+ + Sbjct: 95 VVLSLSGGVDSSSTLILLCALRYHRVV-DWKLRALYMGYSANRENL-DEARSELNLVAWL 152 Query: 77 CSRLRIAHSVVSWKNSKPQTGL------------MAAAREARYALISEHAKTINATLIMT 124 C + + + +P + R+ + S + N +++ Sbjct: 153 CEQCNVQLFAFNIDLPRPHGSEGTTSSGVTRDEYETQTKTIRFRMYSLASGDENC-VVVL 211 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQ 183 H DD E + R + M L+ I RP + R+ + Sbjct: 212 GHHQDDVDENRLEQLSRGHVMGDMDGMHRVRESPPGLDRCIVCRPLIHERKSTFVKVATE 271 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +I + D + R R+ + + L M + +++ A LI Sbjct: 272 AHIPYVHDSTPAWS--VRGITRKALDAVLLDDNTTAMHQILADVACMSSRAAELI 324 >gi|160940060|ref|ZP_02087405.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC BAA-613] gi|158436640|gb|EDP14407.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC BAA-613] Length = 290 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 21/191 (10%) Query: 10 RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FV+ L + V +SGG DSM L L + S + I +D Sbjct: 24 RPFVKGLQDYEMIKDGDKVAVCISGGKDSMLLAKCLQQLKRQ-SRTDFELEFIVMDPGYN 82 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + + D + + I + + R + HA+ + Sbjct: 83 PDNR---NLIEDNAALMNIPVRIFDSDIFDIVVDVEQSPCYLCARMRRGYLYAHARELGC 139 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177 I H FDD +ET+ M G ++ M + + + RP + EDI Sbjct: 140 NKIALGHHFDDVIETILMGIL-----YGGQINTMMPKLHSTNFQGMELIRPLYYVKEEDI 194 Query: 178 RSFLLQRNISW 188 + + + Sbjct: 195 LDWKDYNGLHF 205 >gi|126728219|ref|ZP_01744035.1| ATPase of the PP superfamily protein [Sagittula stellata E-37] gi|126711184|gb|EBA10234.1| ATPase of the PP superfamily protein [Sagittula stellata E-37] Length = 283 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 18/192 (9%) Query: 4 SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +++VR V A LV +SGG DS LL LH + R ++ A ++D Sbjct: 27 RLVQNVREAVDQYGMVQEGARWLVCLSGGKDSYTLLAILHEL-KWRGLLPVELLACNLD- 84 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 + + + ++++ H + + A R + Sbjct: 85 --QGQPGFPATVLPEFLEKMQVPHRIEYQNTYSIVMDKVPQGRTYCALCSRLRRGHLYRI 142 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + ++ H DD LET +M G + + + +L++ RP Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVA 198 Query: 174 REDIRSFLLQRN 185 D F N Sbjct: 199 EADCDKFARDMN 210 >gi|145590171|ref|YP_001156768.1| PP-loop domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205830610|sp|A4T0E0|TTCA_POLSQ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145048577|gb|ABP35204.1| tRNA s(2)C-32 sulfurtransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 302 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 71/217 (32%), Gaps = 16/217 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS +L L + +R+ + A+++D + E + Sbjct: 35 GDKVMVCVSGGKDSYAMLDILMKL-RERAPIDFEIVAVNLD-QKQPNFPAETLP--NYLR 90 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I + + + R ++ A + AT I H DD Sbjct: 91 SLGIPFHIEEQDTYSIVKRVIPEGKTTCGLCSRLRRGILYRVADELGATKIALGHHRDDI 150 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190 LET+ + KGM D + RP + + + + N Sbjct: 151 LETLMLNMFYAGKLKGM----PPKLRSDDGKHIVIRPLAYVPEKLLERYAIDMNFPIIPC 206 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D + +R ++ +RD + F+ + Sbjct: 207 DLCGSQPNLQRQVMKEMLRDWEKKHPGRVENLFRSMH 243 >gi|307266583|ref|ZP_07548114.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326391761|ref|ZP_08213282.1| tRNA methyl transferase-like protein [Thermoanaerobacter ethanolicus JW 200] gi|306918380|gb|EFN48623.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325992199|gb|EGD50670.1| tRNA methyl transferase-like protein [Thermoanaerobacter ethanolicus JW 200] Length = 297 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 24/214 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ + + L ++VA+SGG DS+ L + + I Sbjct: 30 FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82 Query: 62 LRET--AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALI 110 + E + V + C I +VS K +K Q + A + L+ Sbjct: 83 IEENNFSSRSREVVENFCKENDIPLEIVSLKEKFRKGIPDVAKHQDRICALCGVTKRHLM 142 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169 +E+ ++ A + T HT DD + + R D G + + + +P Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEEPGFARK---IKPL 199 Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201 E+I +F NI P + + ++ R Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233 >gi|54309027|ref|YP_130047.1| putative ATPase [Photobacterium profundum SS9] gi|81399572|sp|Q6LR31|TTCA_PHOPR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|46913459|emb|CAG20245.1| Putative ATPase [Photobacterium profundum SS9] Length = 301 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 23/187 (12%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ + +++A SGG DS +L L + I F I+V+ L + ++ Sbjct: 34 NMIEESDVVMACISGGKDSFAMLDILLGLQKS---APINFKVIAVN--LDQKQPGFPEHI 88 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L I + +V R + A+ I AT I Sbjct: 89 LPNYFESLGIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 148 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K S D + RP CR +D+ ++ Sbjct: 149 HHMDDMVETMFLNMFYGSRLK----SMPPKLRSDDQRNVVIRPLTYCREKDLIAYAE--- 201 Query: 186 ISWCEDP 192 + E P Sbjct: 202 --YREYP 206 >gi|331006500|ref|ZP_08329800.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC1989] gi|330419700|gb|EGG94066.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC1989] Length = 330 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 20/253 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ + A+++D + +E+ + Sbjct: 53 GDKVMVCLSGGKDSYAMLDILLNLQKSAPV-NFELVAVNMD-QKQPGFPEEILP--NYLE 108 Query: 79 RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + +V L R + A+ I AT + H DD Sbjct: 109 SLGVPYYIVEKDTYTVVKSLVPEGKTTCGVCSRLRRGTLYGFAEEIGATKVALGHHKDDI 168 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ K M + D D I RP CR DI + + + Sbjct: 169 VETLFLNMFHGGRLKAMPPKLLSD----DKRNIIIRPMAFCRESDIARYAVYQQFPII-- 222 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + +R V+ ++ D F + + +A T Sbjct: 223 PCNLCGSQENLQRQSVKSMLQQWDKDTPGRTDNIFSAISKISPSQLADKDLFDFTHLTID 282 Query: 249 IIAISQDILNIDS 261 ++ + L + Sbjct: 283 RLSEDKKPLKFED 295 >gi|257454112|ref|ZP_05619386.1| PP-loop domain protein [Enhydrobacter aerosaccus SK60] gi|257448590|gb|EEV23559.1| PP-loop domain protein [Enhydrobacter aerosaccus SK60] Length = 407 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 28/270 (10%) Query: 2 FLSPIESVRFFVR------SLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54 F + +R V +++ ++ V +SGG DS LL L + + I+F Sbjct: 80 FRKLQKKLRKLVSWAIRDYNMIEDGDVVMVCISGGKDSFTLLDILLFL---KKIAPIQFD 136 Query: 55 AISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARY 107 I+V+ ++ + + ++ I + + V + +A R Sbjct: 137 VIAVN-LDQKQPDYPEDILPNYLTKHGIPYYILEKDTYSVVKQIVPEGKTYCSACSRLRR 195 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + AK I AT + H DD + T ++ + K M + D D + R Sbjct: 196 GSLYGFAKQIGATKVALGHHRDDIMATFFLNLFHGGSLKAMPPKLLSD----DGQNILIR 251 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 P +DI + + P N + +R + +R D F Sbjct: 252 PLAYVEEKDIIKYANYKQFPII--PCNLCGSQENLQRAMINDMLRAWDQQYPNRLDSIFG 309 Query: 225 DLR-VKVNNAVAMLIPKYLTVHMRSIIAIS 253 ++ V + + + + ++ I Sbjct: 310 AMQNVAPSQLADRELFDFENLQLKRDEHIR 339 >gi|18314221|ref|NP_560888.1| hypothetical protein PAE3646 [Pyrobaculum aerophilum str. IM2] gi|18161815|gb|AAL65070.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2] Length = 298 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 24/183 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VAVSGG DS L L + + A+ ++ +T+ V + +RL Sbjct: 38 IYVAVSGGKDSCAALALLKEYVDSAKI-DAEVKALHINLGF-KTSDRVEEAVKTLANRLG 95 Query: 82 IAHSVVSWKNSKPQTGLMAAARE------------ARYALISEHAKTINATLIMTAHTFD 129 ++ VV K+ + AAAR RY L+++ + + AT + T H Sbjct: 96 VSLHVVHAKDY---LDIEAAARATGRPICSVCGAVKRY-LLNKVPRELGATKVATGHHAH 151 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187 D ++ A + + L L + RP + R E+ + Sbjct: 152 D----FLAYYFKNLAGRHFEWNFKILPRLDGQGLILTRIRPLIFARPEENEELCRSLGLP 207 Query: 188 WCE 190 + E Sbjct: 208 FSE 210 >gi|119871537|ref|YP_929544.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119672945|gb|ABL87201.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184] Length = 304 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 24/180 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I VAVSGG DS L L + + + A ++ R +AK E V + L Sbjct: 36 IYVAVSGGKDSCAALALLKEYIEEYRI-DAEVRAFHINLGFRTSAKIEEA-VRTLAEALG 93 Query: 82 IAHSVVSWKNSKPQTGLMAAARE------------ARYALISEHAKTINATLIMTAHTFD 129 + VV ++ + AAAR RY L+++ + + AT + T H Sbjct: 94 VGIHVVYARDY---LDIEAAARATGRPICSVCGAVKRY-LMNKVPRELGATKVATGHHAY 149 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187 D ++ + + + L + RP + R E+ + +R + Sbjct: 150 D----FLTYYIKNLVGRNHLWNFKILPRVEGGGLLVTKIRPLIFARPEENEEYCRRRGLP 205 >gi|241668719|ref|ZP_04756297.1| hypothetical protein FphipA2_08125 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877251|ref|ZP_05249961.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843272|gb|EET21686.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 252 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 20/205 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 29 KGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSKLRAYL 84 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L +++ + V + R I +AK I+ H DD Sbjct: 85 DDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +E++ M +G S I D + RP + + D+ F + N Sbjct: 145 LIESLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII- 199 Query: 191 DPSNT---DDRFERVRVRRFVRDID 212 P N + +R +V++ ++D+ Sbjct: 200 -PCNLCGSQENLKRKKVKKLIQDLA 223 >gi|71900609|ref|ZP_00682735.1| PP-loop [Xylella fastidiosa Ann-1] gi|71729603|gb|EAO31708.1| PP-loop [Xylella fastidiosa Ann-1] Length = 299 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 49 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + + V + L A R + +A+T T I H DD Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|291535866|emb|CBL08978.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Roseburia intestinalis M50/1] Length = 412 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM LL L L + ++ E + R + + Sbjct: 172 GDKIAVCISGGKDSM-LLAKLFQELYRHGKRNFGLVFLCMNPGYNEE--NW-RIIQENAK 227 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + ++ R + AK + I H FDD +ET Sbjct: 228 LLDIPLTTFETQIFDSVAEVDKNPCYLCARMRRGYLYSKAKELGCNKIALGHHFDDVIET 287 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188 + M GM SG +T++ L + + RP + EDI+++ + + Sbjct: 288 ILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPLYLVKEEDIKAWRDYNRLQF 338 Query: 189 CEDPSNTDDRFERV 202 + RF Sbjct: 339 IQCAC----RFTEN 348 >gi|240145943|ref|ZP_04744544.1| PP-loop family protein [Roseburia intestinalis L1-82] gi|257201930|gb|EEV00215.1| PP-loop family protein [Roseburia intestinalis L1-82] Length = 415 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM LL L L + ++ E + R + + Sbjct: 175 GDKIAVCISGGKDSM-LLAKLFQELYRHGKRNFGLVFLCMNPGYNEE--NW-RIIQENAK 230 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + ++ R + AK + I H FDD +ET Sbjct: 231 LLDIPLTTFETQIFDSVAEVDKNPCYLCARMRRGYLYSKAKELGCNKIALGHHFDDVIET 290 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188 + M GM SG +T++ L + + RP + EDI+++ + + Sbjct: 291 ILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPLYLVKEEDIKAWRDYNRLQF 341 Query: 189 CEDPSNTDDRFERV 202 + RF Sbjct: 342 IQCAC----RFTEN 351 >gi|241358215|ref|XP_002408845.1| conserved hypothetical protein [Ixodes scapularis] gi|215497411|gb|EEC06905.1| conserved hypothetical protein [Ixodes scapularis] Length = 746 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 17/180 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75 +LV +SGG DS+ LL L R + A++VD + + R + Sbjct: 508 GDRVLVCLSGGKDSLSLLHTLRQFQFYFRRKGKRFDLGAVTVD----PGSPLYDPRPLKK 563 Query: 76 VCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + ++ ++ P+ T + + + I A+ ++ D Sbjct: 564 YLAALGVPYFYEEQCILDQASALPECTSICSFCSRMKRGRIYACARREGYNVLALGQHLD 623 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D E+ M + + + + + + +L ++RPF+ R +++R F + + Sbjct: 624 DLAESFVMSVFHNGRLR----TMKANYTVREGDLRVTRPFVYVREKNLRKFAEEMRLPVI 679 >gi|158320074|ref|YP_001512581.1| PP-loop domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158140273|gb|ABW18585.1| PP-loop domain protein [Alkaliphilus oremlandii OhILAs] Length = 285 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I++++ F +L+ I +A+SGG DS+ LL L L + I++D Sbjct: 39 KFIKAIKEF--NLIEDGDKIGIAISGGKDSL-LLAKLFQELKKHGRDNFEVEYIAMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEH 113 E+ + + C+ L I + K K + + R + + Sbjct: 96 HES-------IKKLLIDNCNHLNIPVHIFESKIFKVAENIAKEYPCFMCAKMRRGALYQK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET + L + T N+ + RP Sbjct: 149 AQELGCNKLALGHHFNDVVETTMLNLL-YTGSFKTMLPKLKATNF--ENMELIRPLYYVE 205 Query: 174 REDIRSFLLQRNI 186 E I + I Sbjct: 206 EESIIDYTESNGI 218 >gi|320333598|ref|YP_004170309.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus maricopensis DSM 21211] gi|319754887|gb|ADV66644.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus maricopensis DSM 21211] Length = 287 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 21/191 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L + I F I+V+ L + ++V Sbjct: 24 RMIEDGDTVMVCLSGGKDSYTLLDILLHLQKR---APIDFRLIAVN--LDQGQPGFPKHV 78 Query: 74 S-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + L + H + V + + R ++ HAK I AT I Sbjct: 79 LPQYLTALGVEHQILEQDTYSVVKDKTPEGKTTCSLCSRLRRGILYTHAKRIGATKIALG 138 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184 H DD LET++M G L M + D + RP DI+ + Sbjct: 139 HHRDDILETLFMNMF-----FGARLKAMPPKLQSDDGGNVVIRPLAYVAERDIQRYADAA 193 Query: 185 NISWCEDPSNT 195 P N Sbjct: 194 GYPII--PCNL 202 >gi|68063159|ref|XP_673589.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56491549|emb|CAI00377.1| conserved hypothetical protein [Plasmodium berghei] Length = 405 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I +AVSGG DS L L ++ ++ +++D ++ D ++ V + Sbjct: 49 DKICIAVSGGKDSSVLTHVLVNIKKKYNY-NWNLFLLAIDEGIKGYRDDSLKVVYKLEKL 107 Query: 80 LRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + SV+ +++ + R + + A NAT ++T H Sbjct: 108 YNLPLSVLKFQDIFSYTMDDVVSYIGKKNNCTVCGVFRRQAMEKGALLFNATKLVTGHNA 167 Query: 129 DDQLETVYMRSQRD 142 DD ET+ M R Sbjct: 168 DDLAETILMNMCRG 181 >gi|83316075|ref|XP_731068.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23490990|gb|EAA22633.1| Uncharacterized protein family UPF0021 [Plasmodium yoelii yoelii] Length = 418 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I +AVSGG DS L L ++ ++ +++D ++ D ++ V + Sbjct: 49 DKICIAVSGGKDSSVLTHVLVNIKKKYNY-NWNLFLLAIDEGIKGYRDDSLKVVYKLEKL 107 Query: 80 LRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + SV+ +++ + R + + A NAT ++T H Sbjct: 108 YNLPLSVLKFQDIFSYTMDDVVSYIGKKNNCTVCGVFRRQAMEKGALLFNATKLVTGHNA 167 Query: 129 DDQLETVYMRSQRD 142 DD ET+ M R Sbjct: 168 DDLAETILMNMCRG 181 >gi|296113321|ref|YP_003627259.1| PP-loop family protein [Moraxella catarrhalis RH4] gi|295921015|gb|ADG61366.1| PP-loop family protein [Moraxella catarrhalis RH4] Length = 377 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 29/243 (11%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F ++ ++ V +SGG DS LL L + + I F ++V+ + Sbjct: 70 AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124 Query: 66 AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116 +EV RY+S+ I + ++ +A R + AK Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 I AT + H DD L T ++ + K M + D D + RP +D Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236 Query: 177 IRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 I + + P N + +R + +R+ D + F+ L+ + Sbjct: 237 IIRYANYKKFPII--PCNLCGSQENLQRAMINDMLREWDNAHPKRLVSMFKALQNVAPSQ 294 Query: 234 VAM 236 +A Sbjct: 295 LAD 297 >gi|315126297|ref|YP_004068300.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913] gi|315014811|gb|ADT68149.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913] Length = 304 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 29/272 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V F + I+V +SGG DS +L L + K A+++D + Sbjct: 26 QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLDMLQHLQRVAPI-KFDLFAVNLD-QKQPG- 81 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + L I + +V + R ++ AK + Sbjct: 82 --FPEHVLPEYLDNLNIEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 AT I H DD +ET+++ G L M ++ D + RP C+ DI Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKEADI 194 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNA 233 + + P N + +R + + + F ++ V ++ Sbjct: 195 SKYAFSQGYPII--PCNLCGSQENLQRKHTKNMLEQWNKEHPGRIESIFTAMQNVVPSHL 252 Query: 234 VAMLIPKYLTVHMRSII---AISQDILNIDST 262 + + + +I I+ D +I Sbjct: 253 ADNQLFDFTNLQTGDVIDGGDIALDKPDIPKA 284 >gi|71909752|ref|YP_287339.1| PP-loop [Dechloromonas aromatica RCB] gi|123626220|sp|Q477W2|TTCA_DECAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71849373|gb|AAZ48869.1| PP-loop [Dechloromonas aromatica RCB] Length = 287 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 18/225 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 +LV VSGG DS LL L ++ R+ K + A+++D + ++ RY + Sbjct: 34 VLVCVSGGKDSYTLLAMLMALQ-QRAPVKFRLIAMNLD-QKQPGFPADILPRYFESIGIE 91 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI +SVV K + +T + R +I AK + A I H DD + T+ Sbjct: 92 YRIVEADTYSVVKEKIPEGKT-TCSLCSRLRRGIIYRTAKELGANKIALGHHRDDMVHTL 150 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ K M + D + + RP C DI F P N Sbjct: 151 FLNLLFGGKLKAM----PPKLVTDDKSHVVIRPLAYCAEADIAKFARGMEFPII--PCNL 204 Query: 196 ---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 D +R ++R +++ D F ++ V + +A Sbjct: 205 CGSQDNLQRQKIREMMQEWDKRYPGRTESVFTAMQNVVPSHLADA 249 >gi|28057567|gb|AAO29415.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 312 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 62 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 116 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + + V + L A R + +A+T T I H DD Sbjct: 117 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 176 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 177 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 230 Query: 191 DPSNT 195 P N Sbjct: 231 -PCNL 234 >gi|332678470|gb|AEE87599.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida Fx1] Length = 253 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 20/231 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLCVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 P N + +R +V++ ++D+ L + L +++ + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVLSSHL 240 >gi|238028813|ref|YP_002913044.1| PP-loop family protein [Burkholderia glumae BGR1] gi|237878007|gb|ACR30340.1| PP-loop family protein [Burkholderia glumae BGR1] Length = 329 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 22/223 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ + A+++D + +V + Sbjct: 63 GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFEIVAVNLD-QKQPG---FPEHVLPEYL 117 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ + + + + + R ++ A + AT I H DD Sbjct: 118 TRIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 178 ILQTLLLNLFYGGKLKGMPPKLQSD----DGRNIVIRPLAYVKEVDLEKYAELREFPII- 232 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N +R ++ VRD D F L V Sbjct: 233 -PCNLCGSQPNLKRAEMKALVRDWDKRFPGRVDNMFSALANVV 274 >gi|71274570|ref|ZP_00650858.1| PP-loop [Xylella fastidiosa Dixon] gi|71898109|ref|ZP_00680295.1| PP-loop [Xylella fastidiosa Ann-1] gi|170730829|ref|YP_001776262.1| C32 tRNA thiolase [Xylella fastidiosa M12] gi|205830710|sp|B0U453|TTCA_XYLFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71164302|gb|EAO14016.1| PP-loop [Xylella fastidiosa Dixon] gi|71732083|gb|EAO34139.1| PP-loop [Xylella fastidiosa Ann-1] gi|167965622|gb|ACA12632.1| conserved hypothetical protein [Xylella fastidiosa M12] Length = 299 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 49 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + + V + L A R + +A+T T I H DD Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|161870133|ref|YP_001599303.1| hypothetical protein NMCC_1172 [Neisseria meningitidis 053442] gi|161595686|gb|ABX73346.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 281 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 22/252 (8%) Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83 V +SGG DS LL L + + + A+++D + +EV + + Sbjct: 2 VCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYLESIGVP 57 Query: 84 HSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + +V + + R ++ AK + T I H DD L T++ Sbjct: 58 YKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATMF 117 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 + G L M ++ D I RP + +D+ + + P N Sbjct: 118 LNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII--PCNL 170 Query: 196 ---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 +R + +RD D F L+ V + +A R Sbjct: 171 CGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLERGQTLK 230 Query: 253 SQDILNIDSTLL 264 L DS + Sbjct: 231 HGGDLAFDSEKM 242 >gi|319936857|ref|ZP_08011269.1| PP-loop family protein [Coprobacillus sp. 29_1] gi|319808125|gb|EFW04697.1| PP-loop family protein [Coprobacillus sp. 29_1] Length = 279 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 29/196 (14%) Query: 10 RFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----- 58 R FV+ + I V +SGG DSM + L + + GK F + + Sbjct: 21 RKFVKGVQTYDMIQPNDKIAVCISGGKDSMLMAKLLQEL---KRHGKFDFELVFLSMDPG 77 Query: 59 -DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREARYALISEH 113 + R + + + L I + T + + R + Sbjct: 78 YNEKNR-------KKIEENAEILDIPVQFFESDIFQVVTNIEKSPCYLCARMRRGFLYAK 130 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK + I H DD +ET+ M + M + ++ + + RP Sbjct: 131 AKELGCNKIALGHHIDDVVETILMGMFYGSQIQTM--MPKLHSTNFE-GMELIRPMYLIE 187 Query: 174 REDIRSFLLQRNISWC 189 +DI + ++++ Sbjct: 188 EKDIIHWCHYNDLAFI 203 >gi|299143332|ref|ZP_07036412.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517817|gb|EFI41556.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 282 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 13/189 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + ++ F + I VA+SGG DS+ L + + I++D Sbjct: 27 VKFVRAINEF-EMISEGDRIAVAISGGKDSLTLAKLFQEL-KRHGKMNFELEFIAMDPGY 84 Query: 63 RETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R+ + + Y C ++ I V N Q R + A+ + Sbjct: 85 RKENRQVLEYN---CEKMGIPVKIHNSDVFEVANRVAQNNPCYMCARMRRGNLYSKAQEL 141 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H F+D +ETV + K M D L + RP E I Sbjct: 142 GCNKLALGHHFNDVIETVMLNVIFAGNFKTMMPKLHSDNF---EGLELIRPMYYVEEEAI 198 Query: 178 RSFLLQRNI 186 + F+ + Sbjct: 199 KRFMRSTGL 207 >gi|134297159|ref|YP_001120894.1| C32 tRNA thiolase [Burkholderia vietnamiensis G4] gi|205830572|sp|A4JIF6|TTCA_BURVG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|134140316|gb|ABO56059.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia vietnamiensis G4] Length = 337 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 22/224 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + +R+ A+++D + +V + Sbjct: 62 AGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 116 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +++ + + + + + R ++ A + AT I H D Sbjct: 117 LTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 176 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D L+T+ + KGM D D + RP + D+ + R Sbjct: 177 DILQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELREFPII 232 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N +R ++ +R+ D F L V Sbjct: 233 --PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFSALANVV 274 >gi|15805507|ref|NP_294203.1| C32 tRNA thiolase [Deinococcus radiodurans R1] gi|81551821|sp|Q9RX35|TTCA_DEIRA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|6458168|gb|AAF10060.1|AE001907_6 conserved hypothetical protein [Deinococcus radiodurans R1] Length = 299 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 23/192 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70 R + ++V +SGG DS LL L + I F ++V+ L + +V Sbjct: 36 RMIEQGDRVMVCLSGGKDSYTLLDVLLHLQKK---APIDFEVVAVN--LDQGQPGFPKDV 90 Query: 71 --RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 RY++ + R I +SVV K + +T + R ++ +HA+ I AT I Sbjct: 91 LPRYLTALGVRHDILTEDTYSVVKEKTPEGKT-TCSLCSRLRRGILYQHAREIGATKIAL 149 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H +D LET++M G L M + D + RP DI + Sbjct: 150 GHHREDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVAEADIIRYAQA 204 Query: 184 RNISWCEDPSNT 195 R P N Sbjct: 205 REFPVI--PCNL 214 >gi|332971603|gb|EGK10553.1| PP-loop family protein [Kingella kingae ATCC 23330] Length = 316 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + + + + A+++D + +V + Sbjct: 35 GDKIMVCLSGGKDSYALLDILRQLQASAPI-EFELIAVNLD-QKQPG---FPEHVLPEYL 89 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + + + R ++ AK + T I H DD Sbjct: 90 TSIGVPFKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 + T+++ G L M ++ D I RP + +D+ + + Sbjct: 150 IIATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKEFPII 204 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R + ++D D F L+ V + +A Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLKDWDRRFPGRIESMFSALQNVVPSHLADTELFDFAGLQ 262 Query: 247 RSIIAISQDILNIDST 262 R L DS Sbjct: 263 RGQNLKHGGDLAFDSE 278 >gi|237747072|ref|ZP_04577552.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter formigenes HOxBLS] gi|229378423|gb|EEO28514.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter formigenes HOxBLS] Length = 321 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 15/173 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ++V +SGG DS LL L + + R+ + A+++D L D + Sbjct: 88 DRVMVCLSGGKDSFALLDILLGLQA-RAPIHFELVAVNLDQQLPGFPTDVLP---AYLKD 143 Query: 80 LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I + + + + + R ++ A + AT I H DD L Sbjct: 144 KGIPFHIETQDTYSIIRRLIPENKPVCSLCSRLRRGILYRVASELGATKIALGHHRDDVL 203 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET ++ K S D + RP + + DI F + Sbjct: 204 ETFFLNLFYGSKIK----SMPPKLKTDDGKHIVIRPLVYVKETDIERFADIQQ 252 >gi|134302168|ref|YP_001122137.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418] gi|205830357|sp|A4IYL5|TTCA2_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|134049945|gb|ABO47016.1| putative ATPase, PP-loop family [Francisella tularensis subsp. tularensis WY96-3418] Length = 251 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L +++ +SGG DS GLL LH ++ D+++ I ++D + + + Sbjct: 20 KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 L +++ + V + R I +AK I+ H Sbjct: 76 RKYLDDLGVSYEIETKNTYGVIIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++++ M +G S + D + RP + + D+ F + N Sbjct: 136 HHDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191 Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R +V++ ++D+ L + L + Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236 >gi|210620722|ref|ZP_03292208.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275] gi|210155223|gb|EEA86229.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275] Length = 281 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 18/195 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL I + + I VA+SGG DS+ L+ + L S + +++D Sbjct: 31 FLKAINDYKL----ISDGDRIAVAISGGKDSL-LMAKMFQELKKYSNIDFELVFLAMDPG 85 Query: 62 LRETAKDEVR-YVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAK 115 R D++R + ++C L I + + + R + A+ Sbjct: 86 YR----DDIRVKLEELCKYLNIPVEIFESGIFRITDEIARDNPCYMCARMRRGALYNKAE 141 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H +DD +ET M L + + ++ I RP R E Sbjct: 142 ELGCNKLALGHHYDDVIETTMMNIL-CSGNFKTMLPKIKSSKSGEMQ--IIRPLYYIREE 198 Query: 176 DIRSFLLQRNISWCE 190 I+ F+ I + Sbjct: 199 YIKRFVRYTGIEPLD 213 >gi|291227129|ref|XP_002733541.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii] Length = 1090 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 18/198 (9%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISV 58 +F ++++ + + +LV +SGG DS+ LL L + + A++V Sbjct: 835 LFKPAVQALEEY-NMIENGDKVLVCLSGGKDSLSLLHTLRQYQFYASKKGIDYSLGAVTV 893 Query: 59 DHCLRETA-KDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALIS 111 D + + D L + + + K + + + I Sbjct: 894 D----PQTPSFDPSPLKDYLKALNVPYFYEEQGIIEQAKQLAVCESICSFCSRMKRGRIY 949 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ ++ DD E+ M + + + + + + + +L + RP + Sbjct: 950 ACARREGYNVLAMGQHLDDLTESFLMSAFHNGLLR----TMKANYSVKEGDLRVIRPLVY 1005 Query: 172 CRREDIRSFLLQRNISWC 189 R D RSF Q + Sbjct: 1006 VRETDTRSFAEQVKLPVI 1023 >gi|310778070|ref|YP_003966403.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926] gi|309747393|gb|ADO82055.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926] Length = 282 Score = 90.4 bits (223), Expect = 5e-16, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 19/233 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I++++ F L+ I V VSGG DS+ + + DR+ + IS++ Sbjct: 40 KFIKAIKDF--ELIEDGDRIAVGVSGGKDSLLMCKLFQELKKDRT-KNFEVVFISMNPGF 96 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117 A D ++ + L I + W+ + Q + R ++ + + + Sbjct: 97 --EAMDVDQF-KHNLTELDIPCEIFDSNVWEVAFEQDPENPCFLCAKMRRGVLYKKVEEL 153 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + L + RP + + DI Sbjct: 154 GCNKLALGHHFDDAVETALINMF----YAGTVKTMIPKVKSTSGKLGLIRPMIYIKEIDI 209 Query: 178 RSFLLQRNISWCEDPSNTD---DRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + IS + +R ++ + D++ +K F ++ Sbjct: 210 INYTHKNGISPMTCGCPIESGKTDSKRKEIKNLLADMEQKNPNIKQSIFNSMK 262 >gi|260425967|ref|ZP_05779946.1| PP-loop domain containing protein [Citreicella sp. SE45] gi|260420459|gb|EEX13710.1| PP-loop domain containing protein [Citreicella sp. SE45] Length = 286 Score = 90.4 bits (223), Expect = 6e-16, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 18/192 (9%) Query: 4 SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +++VR V R + A LV +SGG DS LL LH + R ++ A ++D Sbjct: 27 RIVQNVREAVDQYRMIEPGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLDQ 85 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 + + ++ + H + V A R + Sbjct: 86 GQPGFPSTVLP---EFLEKMGLPHRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRI 142 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + ++ H DD LET +M G + + + +L++ RP Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVA 198 Query: 174 REDIRSFLLQRN 185 D F N Sbjct: 199 EADCEKFARAMN 210 >gi|317055960|ref|YP_004104427.1| PP-loop domain-containing protein [Ruminococcus albus 7] gi|315448229|gb|ADU21793.1| PP-loop domain protein [Ruminococcus albus 7] Length = 290 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 15/180 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYV 73 + I V +SGG DSM + + + + + K+ F I +D A + + Sbjct: 33 IQEGDKIAVCISGGKDSMMMAVCMKRLQ---RYSKVPFDVEYIVMD---PGYAPANRQKI 86 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D ++L I + K + R + ++A+ + I H FD Sbjct: 87 IDNAAKLEIPIKIFETKIFDSVVNVKQNPCYLCARMRRGYLYKNAQELGCNKIALGHHFD 146 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + + + RP R EDI + ++ + Sbjct: 147 DVIETILMGMLYGSQVQTMMPKIHSENF---EGMQLIRPLYMVREEDIIKWCGYNDLKFI 203 >gi|89256143|ref|YP_513505.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS] gi|115314615|ref|YP_763338.1| PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|156502170|ref|YP_001428235.1| ATPase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010589|ref|ZP_02275520.1| hypothetical protein Ftulh_07739 [Francisella tularensis subsp. holarctica FSC200] gi|254367466|ref|ZP_04983492.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp. holarctica 257] gi|290953286|ref|ZP_06557907.1| ATPase [Francisella tularensis subsp. holarctica URFT1] gi|295313492|ref|ZP_06804088.1| ATPase [Francisella tularensis subsp. holarctica URFT1] gi|122325361|sp|Q0BMI3|TTCA1_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|122500903|sp|Q2A447|TTCA1_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|205830351|sp|A7NBC6|TTCA1_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|89143974|emb|CAJ79199.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129514|gb|ABI82701.1| possible PP-loop superfamily ATPase [Francisella tularensis subsp. holarctica OSU18] gi|134253282|gb|EBA52376.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp. holarctica 257] gi|156252773|gb|ABU61279.1| putative ATPase, PP-loop family [Francisella tularensis subsp. holarctica FTNF002-00] Length = 251 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 27/241 (11%) Query: 7 ESVRFFVRSLVYPAHIL-------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + +R ++ + +L + +SGG DS GLL LH ++ D+++ I ++D Sbjct: 6 KKLRHYITKAIADYKLLDKGDKAMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD 64 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + + + L +++ + V + R I Sbjct: 65 ---QSQPGWDDSQLRKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYR 121 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 +AK I+ H DD ++++ M +G S + D + RP + Sbjct: 122 YAKEHKMDKIILGHHRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLV 177 Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + D+ F + N P N + +R +V++ ++D+ L + L Sbjct: 178 QERDLIEFAKEENFPII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNV 235 Query: 230 V 230 + Sbjct: 236 L 236 >gi|254470160|ref|ZP_05083564.1| ATPase, PP superfamily [Pseudovibrio sp. JE062] gi|211960471|gb|EEA95667.1| ATPase, PP superfamily [Pseudovibrio sp. JE062] Length = 321 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 23/234 (9%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 L+ +SGG DS LL L + R + A ++D + + + Sbjct: 63 PEKTKWLICLSGGKDSYTLLAVLMDL-KWRGLLPVDLIACNLD---QSQPGFPQHILPEF 118 Query: 77 CSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFD 129 R I + +V + P+T + R ++ A+ + I+ H D Sbjct: 119 FERYEIPNLIVRENTYGIVTDKLPETSTYCSLCSRLRRGILYRTARELGCEAIVLGHHRD 178 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LET M G S + + +L + RP + DI F Sbjct: 179 DALETFMMNMFHG----GRMASMPPKLVNDEGDLMVLRPLMNSSEADIEKFSKAMEFPII 234 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAML 237 P N D +RV+V+ ++ + L + + +R + Sbjct: 235 --PCNLCGSQDGLQRVQVKNMLQQWEKETPGRLGIMARALAHVRPSHLHDAKAF 286 >gi|226324108|ref|ZP_03799626.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758] gi|225207657|gb|EEG90011.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758] Length = 377 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 88/236 (37%), Gaps = 24/236 (10%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 ++VR + LV I V +SGG DSM + + F + + +D Sbjct: 126 KAVREY--ELVKEGDRIAVCISGGKDSMLMAKLFQELKRHNKF-NFEVKFLVMDPGYSPE 182 Query: 66 AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121 + + + +++I + + + + R + A+ + Sbjct: 183 NRKVIE---ENARKMKIPIQIFESNIFESVFEIEKSPCYICARMRRGYLYNFAQQMGCNK 239 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I H +DD +ET+ M + M + ++ + + RP R +DI+++ Sbjct: 240 IALGHHYDDVIETILMGMLYSAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDIKAWR 296 Query: 182 LQRNISWCEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + + N +++ +R+ +++ + ++ +++ F+ + Sbjct: 297 DYNDLHFIQCACKFTDTCTTCNNEENQSKRMEIKKLIAELKKTNPFVEGNIFKSVE 352 >gi|323149149|ref|YP_004221978.1| tRNA(Ile)-lysidine synthetase [Coccomyxa sp. C-169] gi|317467205|gb|ADV29826.1| tRNA(Ile)-lysidine synthetase [Coccomyxa sp. C-169] Length = 227 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 9/168 (5%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + + VR ++ L ++A+SGG DS L+ + R F IS + Sbjct: 9 IELVNEVRTILKKRNALTANTATILAISGGQDSACLIAMATQMREQRR---CSFGVISCN 65 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 H + + + +V C + + + + A AR RY + + Sbjct: 66 HLWQRDSFHGLVHV---CRLAFLVCQPIYFVAAPFNISNEANARSWRYNSMHRIGGLYHF 122 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + I T HT D++ET+ R +G+ G + W R Sbjct: 123 STICTGHTASDRVETILFNFVRGSGTRGLSALGWNRFFVTSYPHWYHR 170 >gi|77747703|ref|NP_779766.2| hypothetical protein PD1573 [Xylella fastidiosa Temecula1] gi|182682182|ref|YP_001830342.1| C32 tRNA thiolase [Xylella fastidiosa M23] gi|205830660|sp|B2I7H1|TTCA_XYLF2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830734|sp|Q87B85|TTCA_XYLFT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|182632292|gb|ACB93068.1| PP-loop domain protein [Xylella fastidiosa M23] gi|307578450|gb|ADN62419.1| C32 tRNA thiolase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 299 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 49 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + + V + L A R + +A+T T I H DD Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|119774936|ref|YP_927676.1| C32 tRNA thiolase [Shewanella amazonensis SB2B] gi|205830625|sp|A1S6K0|TTCA_SHEAM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|119767436|gb|ABM00007.1| conserved hypothetical protein [Shewanella amazonensis SB2B] Length = 319 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 86/248 (34%), Gaps = 25/248 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + A+++D + +V L + Sbjct: 48 LSGGKDSYAMLDILINLQ-QRAPVSFEIVAVNLD-QKQPG---FPEHVLPAYLETLGVPF 102 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 103 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195 G + M +L D + RP CR +DI + + P N Sbjct: 163 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDIAEYAELKQFPII--PCNLC 215 Query: 196 --DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSIIAI 252 + +R V+ ++ D F ++ + V ++++ Sbjct: 216 GSQENLKRAAVKDMLKQWDRQHPGRIETIFTAMQNTAPSQGVDREQFDFVSLKQDPNAEF 275 Query: 253 SQDILNID 260 D+ D Sbjct: 276 RGDVAEAD 283 >gi|312880289|ref|ZP_07740089.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260] gi|310783580|gb|EFQ23978.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260] Length = 258 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 15/220 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVRYVS 74 ++ IL+ +SGG DS+ L + L + RS A VD H + Sbjct: 29 ILPHDRILLGLSGGKDSILLALGLRELQR-RSPVPFHLQACFVDSHG----EDSVPPSLQ 83 Query: 75 DVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D + L I S+ + + + R +++ A+ ++ H D Sbjct: 84 DFAASLGIPLVTRSYPIFPILKEREEAHPCSLCAHLRRGILASCAQETGNNVLALGHHLD 143 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D LET + G + + + RP + + + + + Sbjct: 144 DALETTLLNLC----HAGRFRCFSPHMTMSRSGIRVIRPLVFLEESAVAAEVARLGYIPS 199 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 P R ++ +++++ +K L+ Sbjct: 200 APPCPFGMEGRRGAMKHLLKELETSIPEIKGNLLHALQTH 239 >gi|117619906|ref|YP_856828.1| tRNA s2C32 biosynthesis protein TtcA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205830593|sp|A0KKM7|TTCA_AERHH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|117561313|gb|ABK38261.1| tRNA s2C32 biosynthesis protein TtcA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 302 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L S+ + A+++D + +V + Sbjct: 37 GDKVMVCLSGGKDSFAMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPEHVLPEYL 91 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L I +V A R ++ A+ + T I H DD Sbjct: 92 TTLGIDFKIVEEDTYAIVKEKVPEGKTTCALCSRLRRGILYRTAQELGCTKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K S + D + RP C+ +D+ + + Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLVRYAEVKAFPII- 206 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + +R +++ +++ D F ++ + + + R Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQEWDRRFPGRLETMFTAIQDVIPSHLLDHKLFDFKSINR 265 Query: 248 SIIAISQDILNIDSTLL 264 I D L Sbjct: 266 DSGIIDGGDKAFDPPEL 282 >gi|9105431|gb|AAF83379.1|AE003903_15 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 312 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 62 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 116 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + H + V + L A R + +A+T T I H DD Sbjct: 117 SIGMPHHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 176 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 177 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 230 Query: 191 DPSNT 195 P N Sbjct: 231 -PCNL 234 >gi|268608249|ref|ZP_06141976.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus flavefaciens FD-1] Length = 374 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 12/180 (6%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 LV P I V +SGG DSM + + F + + +D + + Sbjct: 128 QLVQPNDRIAVCISGGKDSMLMAKLFQELKRHDKFP-FEVVFLVMDPGYSPENRRVIE-- 184 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 D + I + + R + AK + I H FD Sbjct: 185 -DNARSMSIPVHIFESTIFDSVYNIEKNPCYICARMRRGYLYSKAKELGCNKIALGHHFD 243 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET+ M + M + +D + + RP R ++I+ + ++ + Sbjct: 244 DVIETILMGMLYGGQVQTM--MPKLHSTNFD-GMELIRPLYLVREDEIKHWRDYNDLHFI 300 >gi|325526540|gb|EGD04096.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Burkholderia sp. TJI49] Length = 332 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 22/223 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + +R+ + A+++D + +V + Sbjct: 64 GDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFEIVAVNLD-QKQPG---FPEHVLPEYL 118 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ + + + + + R ++ A + AT I H DD Sbjct: 119 TQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 178 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + KGM D D + RP + D+ + R Sbjct: 179 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 233 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N +R ++ +R+ D F L V Sbjct: 234 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFSALANVV 275 >gi|332535847|ref|ZP_08411573.1| tRNA(cytosine32)-2-thiocytidine synthetase [Pseudoalteromonas haloplanktis ANT/505] gi|332034756|gb|EGI71297.1| tRNA(cytosine32)-2-thiocytidine synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 304 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 22/198 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V F + I+V +SGG DS +L L + + IKF + V+ L + Sbjct: 26 QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVN--LDQKQ 79 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V +L + + +V + R ++ A + Sbjct: 80 PGFPEHVLPQYLDKLNVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTANELG 139 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 AT I H DD +ET+++ G L M ++ D + RP C+ DI Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKESDI 194 Query: 178 RSFLLQRNISWCEDPSNT 195 + + P N Sbjct: 195 SQYAFAQGYPII--PCNL 210 >gi|307131365|ref|YP_003883381.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii 3937] gi|306528894|gb|ADM98824.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii 3937] Length = 313 Score = 90.0 bits (222), Expect = 6e-16, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 85/256 (33%), Gaps = 24/256 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + +V Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHVLPQYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 DSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L+T+++ G L GM ++ D + RP CR +DI F R Sbjct: 154 ILQTLFLNMF-----YGGKLKGMPPKLVSDDGKHVVIRPLAYCREKDIERFADARQFPII 208 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R ++ +RD D F ++ V + + Sbjct: 209 --PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHLCDTNLFDFKSIR 266 Query: 247 RSIIAISQDILNIDST 262 + + L D Sbjct: 267 QGSEVVDGGDLAFDRE 282 >gi|254671409|emb|CBA08896.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 319 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVLYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + +RD D F L+ V + + Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 A R L DS + Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280 >gi|262278086|ref|ZP_06055871.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter calcoaceticus RUH2202] gi|262258437|gb|EEY77170.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter calcoaceticus RUH2202] Length = 301 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F L ++V VSGG DS LL + + I F ++V+ + Sbjct: 37 AIRDF-NMLEEGDKVMVCVSGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD L T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + R P N + +R + +RD D K+ + + N Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAMLNEMLRDWDKQYP----KRLHSIFGALQNVSPS 260 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + ++ + + L L Sbjct: 261 QLADRELFDFEALDSQRELDFKDPEELKNRL 291 >gi|293115558|ref|ZP_05792063.2| PP-loop family protein [Butyrivibrio crossotus DSM 2876] gi|292809265|gb|EFF68470.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876] Length = 390 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 11/178 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + V +SGG DSM + + F + + +D E + + Sbjct: 144 LKPGDKVAVCISGGKDSMLMAKLFQEIKRHNKF-DFELVFLVMDPGYSEVNRLVIE---K 199 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + ++ + + R + AK + I H +DD Sbjct: 200 NARMLGVPITIFETQIFDAVYDVKQSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDV 259 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET+ M + M + ++ + + RP R +DI + N+ + Sbjct: 260 IETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYYIREDDIMHWRDFNNLHFI 314 >gi|94309129|ref|YP_582339.1| hypothetical protein Rmet_0184 [Cupriavidus metallidurans CH34] gi|205830620|sp|Q1LS06|TTCA_RALME RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|93352981|gb|ABF07070.1| putative ydaO, C32 tRNA thiolase [Cupriavidus metallidurans CH34] Length = 314 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 96/281 (34%), Gaps = 24/281 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80 +LV +SGG DS +L L ++ R+ + K A+++D + +V L Sbjct: 34 VLVCMSGGKDSYTMLSVLTALQK-RAPIQFKLIAMNLD-QKQPG---FPEHVLPAYLKSL 88 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + R +I AK + A I H DD + Sbjct: 89 GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192 T ++ G + M + D I RP C +DI S+ P Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGQHIVIRPLAYCAEKDIASYARAMAFPII--P 201 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 N + +R +V ++ + F LR V + +A T + Sbjct: 202 CNLCGSQENLQRKKVSEMLQAWERENPGRIDNIFAALRNVVPSHLADTDLFPFTGLATGL 261 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 I + L ++T L + + ++ + +++V Sbjct: 262 AKIDEASLFGETTFTQQALTFTGNVEANRMEFVRFDKIQKV 302 >gi|293609921|ref|ZP_06692223.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828373|gb|EFF86736.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 313 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 21/268 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL L + I F ++V+ + Sbjct: 49 AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFEVVAVNLDQKQPGF 104 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 105 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 162 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 163 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 218 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + R P N + R + ++ K+ + + N + Sbjct: 219 YAEIRQFPII--PCNLCGS-QENLQRAMLNEMLREWDKQYPKRLHSIFGALQNVSPSQLA 275 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267 ++ + + + L L Sbjct: 276 DRELFDFEALDSQRELDIKDPEELKNRL 303 >gi|153003817|ref|YP_001378142.1| C32 tRNA thiolase [Anaeromyxobacter sp. Fw109-5] gi|205830553|sp|A7H8W2|TTCA_ANADF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|152027390|gb|ABS25158.1| PP-loop domain protein [Anaeromyxobacter sp. Fw109-5] Length = 303 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 21/285 (7%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + + ++R F + I+VAVSGG DS LL L + +R+ A+++D Sbjct: 24 LLRAAANAIRDF-ELIGDGDRIMVAVSGGKDSYTLLHVLMRL-RERAPIDFDLVAVNLD- 80 Query: 61 CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113 + V + + H + + R ++ Sbjct: 81 --QGQPGYPAEIVERHFQAVGVPHRMLYADTYSIVRRLVPEGKTTCPVCSRLRRGVLYNA 138 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A + T I H DD +ET+ + G S D + RP Sbjct: 139 AAEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSDDGRNVVVRPLCYAA 194 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-N 231 EDI +F D + R RV+ + ++ +K L V + Sbjct: 195 EEDIAAFATAMRFPIVPCDLCGSQPNLRRKRVKALLAELSDEHPAVKGNLLNALGHVVPS 254 Query: 232 NAVAMLIPKYLTVHMRSII---AISQDILNIDSTLLFYLLRVSAA 273 + + + + + R +D + + L++++ A Sbjct: 255 HLLDRDLHRLVASTGRDPWLDGDEDEDGGCLQGEVADALVKLAGA 299 >gi|115353078|ref|YP_774917.1| C32 tRNA thiolase [Burkholderia ambifaria AMMD] gi|122322057|sp|Q0BB90|TTCA_BURCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|115283066|gb|ABI88583.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia ambifaria AMMD] Length = 334 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 45 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 103 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 104 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 159 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD L+T+ + KGM D D + RP Sbjct: 160 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 215 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ F R P N +R ++ +RD D F L Sbjct: 216 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 273 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 V + + + A Q + D Sbjct: 274 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 309 >gi|319788521|ref|YP_004147996.1| PP-loop domain protein [Pseudoxanthomonas suwonensis 11-1] gi|317467033|gb|ADV28765.1| PP-loop domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 306 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + + + A+++D + +V + Sbjct: 48 GDKVMVCLSGGKDSYTLLDVLLQLQKKAPV-RFELVAVNLD-QKQPG---FPEHVLPEYL 102 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + V + + + R + +A T I H DD Sbjct: 103 RGLGVPFHIIEQDTYSVVTRVVPEGKTMCSLCSRLRRGALYSYAAEHGFTKIALGHHRDD 162 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 + T +M +SGM +L D + RP R EDI + R Sbjct: 163 MVATFFMNLFHHAK-----ISGMPPKLLSDDGRHVVIRPLAYVREEDIVQYAAARQFPII 217 Query: 190 EDPSNT 195 P N Sbjct: 218 --PCNL 221 >gi|329119523|ref|ZP_08248208.1| PP-loop family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464456|gb|EGF10756.1| PP-loop family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 313 Score = 90.0 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 25/268 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + S + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQSSAPV-DFELVAVNLD-QKQPR 79 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + + + +V + + R ++ AK + Sbjct: 80 FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177 T I H DD L T+++ G L M ++ D I RP + +D+ Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N +R + ++D D F LR V + + Sbjct: 193 IRYAEIKQFPII--PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALRNVVPSHL 250 Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDST 262 A R L DS Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSE 278 >gi|332527842|ref|ZP_08403880.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rubrivivax benzoatilyticus JA2] gi|332112237|gb|EGJ12213.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rubrivivax benzoatilyticus JA2] Length = 308 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 21/249 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75 ++V +SGG DS LL L S+ +R+ + A+++D + EV Y+ Sbjct: 42 AGDRVMVCMSGGKDSHALLDILLSM-RERAPIDFEIVAVNLD-QKQPGFPAEVLPTYLKS 99 Query: 76 VCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 RI +S+V + QT + + R ++ A I AT I H DD Sbjct: 100 RGVEFRIEEQDTYSIVKRLVPEGQT-MCSLCSRLRRGVLYRVASEIGATKIALGHHRDDM 158 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 + T+ M KGM + D + RP D+ + R Sbjct: 159 VVTLLMNMFFGSRMKGM----PPKLVSDDGRHVVIRPLAYVAETDLERWAEHRAFPII-- 212 Query: 192 PS----NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246 P N ++ +RV++++ +R+ + F + V ++ + + + T+ Sbjct: 213 PCSLCGNQENL-QRVQIKKMIREWERQYPGRIDNMFTAMGNIVPSHMMDRKLYPFETLRA 271 Query: 247 RSIIAISQD 255 + D Sbjct: 272 TGVADADGD 280 >gi|119472171|ref|ZP_01614373.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7] gi|119445090|gb|EAW26384.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7] Length = 303 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 25/262 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V F + I+V +SGG DS +L L + + IKF + V+ L + Sbjct: 26 QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVN--LDQKQ 79 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + +L + + +V + R ++ AK + Sbjct: 80 PGFPEHVLPEYLDKLDVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 AT I H DD +ET+++ G L M ++ D + RP C+ DI Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKEADI 194 Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + P N + +R + + + F ++ V + + Sbjct: 195 SKYAFTQGYPII--PCNLCGSQENLQRKHTKNMLAQWNKDHPGRIESIFTAMQNVVPSHL 252 Query: 235 AMLIPKYLTVHMRSIIAISQDI 256 A + DI Sbjct: 253 ADAELFDFENLKTGEVIDGGDI 274 >gi|297537477|ref|YP_003673246.1| PP-loop domain-containing protein [Methylotenera sp. 301] gi|297256824|gb|ADI28669.1| PP-loop domain protein [Methylotenera sp. 301] Length = 301 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 22/216 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 +LV +SGG DS +L+ L ++ +R+ K A+++D + + + Sbjct: 40 VLVCMSGGKDSHAMLMILLALQ-ERAPINFKLIAMNLD-QKQPGFPADILPAYF-----E 92 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + +V K P+ + R +I AK + A I H DD Sbjct: 93 KLGIDYRIVEADTYSIVKEKIPEGATTCSLCSRLRRGIIYTTAKKLGANKIALGHHRDDI 152 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190 +ET+++ K M D + RP C +DI S+ Q Sbjct: 153 VETLFLNMFFGAKLKAM----PPKLSTNDKQNIVIRPLAYCSEKDIASYARQMEFPIIPC 208 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + + +R +V+ ++ + F+ + Sbjct: 209 DLCGSQENLQRQKVKDMLQAWEREQPGRINNIFRAI 244 >gi|261403320|ref|YP_003247544.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] gi|261370313|gb|ACX73062.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] Length = 305 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 20/216 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I V +SGG DS+ + L S + VD ++ +YV + C Sbjct: 47 KIGVGISGGKDSLVMTYILKKFYD--SIPNSEIICFFVDEGIKGFRDVAKKYVVEFCKEF 104 Query: 81 RIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATLIMT 124 I ++S+K T + R L++++A N T + Sbjct: 105 DIDLRIISFKEEINYTMDELVEKNYLKHLNIGKPCSFCGVVRRYLLNKYAFLNNCTYLAI 164 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD +T+ M + + D + +P E++ + Sbjct: 165 GHNLDDFCQTILMNYIEGNVKNI--IQFGKDVSSSTNFVKRIKPLKLIPEEEVILYAKLN 222 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 N+ + ++P R ++++ + ++ ++ Sbjct: 223 NLKYQKEPCPYSHLSYRYKIKKIIEMLEEDKPGVRF 258 >gi|293409739|ref|ZP_06653315.1| C32 tRNA thiolase [Escherichia coli B354] gi|291470207|gb|EFF12691.1| C32 tRNA thiolase [Escherichia coli B354] Length = 311 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKSITHGSEVVNGGDLAFDREEI 284 >gi|84499795|ref|ZP_00998083.1| hypothetical protein OB2597_07690 [Oceanicola batsensis HTCC2597] gi|84392939|gb|EAQ05150.1| hypothetical protein OB2597_07690 [Oceanicola batsensis HTCC2597] Length = 297 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 19/234 (8%) Query: 4 SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +++VR V A LV +SGG DS LL L+ + R ++ A ++D Sbjct: 27 RIVQNVREAVDRYGMVEPGARWLVCLSGGKDSYTLLAILYEL-KWRGLLPVELLACNLD- 84 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 + + + R+ + H + V A R + Sbjct: 85 --QGQPGFPATVLPEFLERMGVPHRIEFQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRI 142 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + ++ H DD LET +M G + + + +L++ RP Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVA 198 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D F N D + D +R +V++ + + +A + F+ L Sbjct: 199 EADCERFARAMNYPIIPCDLCGSQDGLQRQQVKQILDGWERNAPGRRQVMFRAL 252 >gi|301025572|ref|ZP_07189095.1| PP-loop family protein [Escherichia coli MS 69-1] gi|300395892|gb|EFJ79430.1| PP-loop family protein [Escherichia coli MS 69-1] Length = 311 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDTLQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D L Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEL 284 >gi|224550203|gb|ACN54186.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia longicornis] Length = 150 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 6/138 (4%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219 I RP L R +I + + W ED SN D ++ R R ++ D + L Sbjct: 1 IFRPLLNFSRSEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278 + + + + + + VH I I + + + LL S + Sbjct: 61 ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120 Query: 279 ISLPGYRSMERVMLFLKS 296 P YRS+ + + Sbjct: 121 HYKPRYRSLIAIFNKISQ 138 >gi|255318930|ref|ZP_05360156.1| PP-loop domain protein [Acinetobacter radioresistens SK82] gi|262378818|ref|ZP_06071975.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] gi|255304186|gb|EET83377.1| PP-loop domain protein [Acinetobacter radioresistens SK82] gi|262300103|gb|EEY88015.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164] Length = 300 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 23/240 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD L T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + R P N + +R + +RD D F L+ + +A Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAIINDMLRDWDKAHPKRLHSIFGALQNVSPSQLAD 264 >gi|323492659|ref|ZP_08097803.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio brasiliensis LMG 20546] gi|323313034|gb|EGA66154.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio brasiliensis LMG 20546] Length = 310 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 86/267 (32%), Gaps = 42/267 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 I+V +SGG DS +L L S+ I FS ++V+ H L E Sbjct: 40 GDRIMVCLSGGKDSFTMLDILMSLQKS---APISFSLVAVNLDQKQPGFPGHILPE---- 92 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121 L + + +V + R ++ A + AT Sbjct: 93 -------YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTANELGATK 145 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180 I H DD LET+++ + M ++ D + RP CR +DI + Sbjct: 146 IALGHHRDDILETLFLNMFHGGK-----MKAMPPKLVSDNGEHVVIRPLAYCREKDIIKY 200 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R P N +R +++ + D D F+ ++ V + +A Sbjct: 201 SEMREYPII--PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADF 258 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 + I+ + D + Sbjct: 259 ELFDFKSIDKDSGVINGGDIGFDKEEM 285 >gi|224550207|gb|ACN54188.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia longicornis] Length = 150 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 6/138 (4%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219 I RP L R +I + + W ED SN D ++ R R ++ D + L Sbjct: 1 IFRPLLNFSRNEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278 + + + + + + VH I I + + + LL S + Sbjct: 61 ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120 Query: 279 ISLPGYRSMERVMLFLKS 296 P YRS+ + + Sbjct: 121 HYKPRYRSLIAIFNKISQ 138 >gi|84994388|ref|XP_951916.1| hypothetical protein [Theileria annulata strain Ankara] gi|65302077|emb|CAI74184.1| hypothetical protein, conserved [Theileria annulata] Length = 391 Score = 89.6 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 37/227 (16%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + VSGG DS L L + + VD ++ D ++ V + R Sbjct: 52 VCIGVSGGKDSSVLAHVLSKIKEKYKM-DWNLYLLGVDEGIKGYRDDSLKVVKSIFKD-R 109 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 S+ + G R ++ A+ A ++ T H DD ETV + R Sbjct: 110 FGFSMDQVVKLIGKRGNCTVCGSFRRQMLEIGARIFGANVLCTGHNADDMAETVLLNLFR 169 Query: 142 DYAEKGM----------------GLSGMCDTILYDLNLWI-------------------S 166 K G D + N+ + Sbjct: 170 GDLLKLTNSNITTYSINSVGELNGFKEDLDNQIDGKNVNLEIKSKLNQSTNNKLRKIKRV 229 Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213 +P ++I + ++ + R +R F+++++L Sbjct: 230 KPLKYSFEKEIVLYARYLSLDYFSTECIYSPEAYRGHMRSFIKNLEL 276 >gi|291544395|emb|CBL17504.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus sp. 18P13] Length = 276 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 77/237 (32%), Gaps = 29/237 (12%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +L+ P I V VSGG DSM L + + R +++D + + Sbjct: 35 ALIAPGDRIAVCVSGGKDSMLLAKLMQQLQRVRQ-NDFTLEFLTMDPGY------DPAHT 87 Query: 74 SDV---CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + L I V +K R + A+ + I H Sbjct: 88 QQLLDNAALLGIPVQVFETNILRIVNKQAQHPCFLCARMRRGHLYAKAQALGCNKIALGH 147 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQR 184 F+D +ET M G + M D + + RP EDI ++ Sbjct: 148 HFNDVIETTLMGML-----YGGQIQAMLPRRRSDNYDGMELIRPLYCVHEEDILAWRDAN 202 Query: 185 NISWCEDP------SNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + + + S D + R RV+ + + + ++ F + +++ Sbjct: 203 ALHFLQCACRFTSRSQEDAAYSRRARVKALIAHLKTESPEVERSIFHSIHTVQLDSM 259 >gi|317055588|ref|YP_004104055.1| PP-loop domain-containing protein [Ruminococcus albus 7] gi|315447857|gb|ADU21421.1| PP-loop domain protein [Ruminococcus albus 7] Length = 294 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 37/202 (18%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI---------SVDHCLRETA 66 + I V +SGG DSM + + + + + K+ F + +++ Sbjct: 37 IQEGDRIAVCISGGKDSMLMALCMKRLQ---RYSKVPFEVVFLVMDPGYNEINYQ----- 88 Query: 67 KDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + V + L I V +K R + + AK + I Sbjct: 89 ----KIVEN-AETLEIPIQVFKTGIFDAVAKVDEHPCYLCARMRRGHLYKTAKELGCNKI 143 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSF 180 H FDD +ET+ M G + M I + + + RP R DI + Sbjct: 144 ALGHHFDDVIETILMGML-----YGSQVQTMMPKIHSENYEGMQLIRPMYMVREADIIRW 198 Query: 181 LLQRNISWCEDPSNTDDRFERV 202 ++ + + RF Sbjct: 199 KQYNDLQFIQCAC----RFTEN 216 >gi|171323015|ref|ZP_02911676.1| PP-loop domain protein [Burkholderia ambifaria MEX-5] gi|171091602|gb|EDT37193.1| PP-loop domain protein [Burkholderia ambifaria MEX-5] Length = 338 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 48 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 106 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 107 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 162 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD L+T+ + KGM D D + RP Sbjct: 163 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 218 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ F R P N +R ++ +RD D F L Sbjct: 219 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 276 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 V + + + A Q + D Sbjct: 277 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 312 >gi|319426422|gb|ADV54496.1| PP-loop domain protein [Shewanella putrefaciens 200] Length = 310 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 22/200 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ + + A+++D + +++ +L++ + Sbjct: 44 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPGFPEDILPA--YLDKLKVPYH 99 Query: 86 VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 G + M +L D I RP CR +D+ + + P N Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANIVIRPLAYCREKDLEEYAQLKQFPII--PCNLCG 212 Query: 196 -DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 213 SQENLKRAAVKDMLNQWDRQ 232 >gi|325294837|ref|YP_004281351.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065285|gb|ADY73292.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 312 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 26/188 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 +L+AVSGG DS+ L ALH + I E +K + Sbjct: 51 KDEKVLIAVSGGKDSLSLWYALHRLGYKTYGFHISLGI----EGW-EYSKKSLDICKKFS 105 Query: 78 SRLRIAHSVVSWKNSKPQTGLMAAA----RE---------ARYALISEHAKTINATLIMT 124 R+ + K+ + A R+ RY L+++ K ++ T Sbjct: 106 ERIERPLIIFDIKDEF-GYSIEEIAKGSGRKDVCSVCGTFKRY-LMNKICKEQGFKVVAT 163 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSFLL 182 H DD E+ + +G G +L + N +PF+ ++I S+ + Sbjct: 164 GHNLDD--ESAL--LLSNTIRWEIGYLGRQHPVLPEKNGFARKVKPFVFFTEKEIVSYAI 219 Query: 183 QRNISWCE 190 I + E Sbjct: 220 LNKIEYLE 227 >gi|311279743|ref|YP_003941974.1| PP-loop domain-containing protein [Enterobacter cloacae SCF1] gi|308748938|gb|ADO48690.1| PP-loop domain protein [Enterobacter cloacae SCF1] Length = 311 Score = 89.6 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFAQAKAFPII--PCNL 212 >gi|30249461|ref|NP_841531.1| hypothetical protein NE1490 [Nitrosomonas europaea ATCC 19718] gi|75540489|sp|Q82UJ4|TTCA_NITEU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|30138824|emb|CAD85401.1| Uncharacterized protein family UPF0021 [Nitrosomonas europaea ATCC 19718] Length = 314 Score = 89.6 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 24/262 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L ++ + + A+++D + +V Sbjct: 37 KGDRVMVCLSGGKDSYALLDILRNLQAHAPL-DFELIAVNLD-QKQPG---FPEHVLPGY 91 Query: 77 CSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 S + + +V + + R ++ A + AT I H D Sbjct: 92 LSEINMPFRIVEQDTYSVVKRVIAEGKTTCSLCSRLRRGVLYRVATELGATKIALGHHRD 151 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D LET ++ G L M ++ D + RP C+ +D+ ++ Sbjct: 152 DILETFFLNMF-----YGGKLKAMPPKLVSDDGCHVVIRPLAYCKEKDLAAYAWHAQFPI 206 Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ ++ D F L+ + +A Sbjct: 207 I--PCNLCGSQPNLQRQVIKEMMQQWDKKYPGRLETMFTALQNIQLSHLADTSRYDFVGL 264 Query: 246 MRSIIAISQDILNIDSTLLFYL 267 IAI + D L + Sbjct: 265 KPHGIAIEEGDKAFDEEPLSVI 286 >gi|284007458|emb|CBA72913.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 324 Score = 89.6 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 22/222 (9%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I+V +SGG DS LL L ++ AI++D + ++ + Sbjct: 56 DRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFTLFAINLD-QKQPGFPADILP--SYLDK 111 Query: 80 LRIAHSVVS------WKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L I + +V+ K P + R ++ A + AT I H DD L Sbjct: 112 LGIEYQIVTENTYAIVKEKIPAGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDIL 171 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191 +TV++ G L GM ++ D I RP CR +DI + + Sbjct: 172 QTVFLNMF-----YGGKLKGMPPKLMSDNGKHIVIRPLAYCREKDIAHYAKIKEFPII-- 224 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N +R + +R+ D FQ ++ V Sbjct: 225 PCNLCGSQPNLQRQVIGNMLREWDKQYPGRIETMFQAMQNIV 266 >gi|262376609|ref|ZP_06069837.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter lwoffii SH145] gi|262308319|gb|EEY89454.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter lwoffii SH145] Length = 308 Score = 89.6 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 24/260 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + + ++V +SGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-KMIEEGDKVMVCISGGKDSYTLLDILLQF---KRIAPINFDVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ K + A R + A+ I A Sbjct: 93 PEDVLP--RYLEENNIPYYILEKDTYSITKKLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD L T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVA 235 + R P N D +R + +RD D F L+ + V Sbjct: 207 YAEMRQFPII--PCNLCGSQDNLQRAIINDMLRDWDKAHPKRLHSIFGALQNVSPSQLVD 264 Query: 236 MLIPKYLTVHMRSIIAISQD 255 + + + + Sbjct: 265 RELFDFEVLDSQREFDFKGG 284 >gi|218282849|ref|ZP_03489002.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989] gi|218216305|gb|EEC89843.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989] Length = 378 Score = 89.6 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 19/176 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYVSDVCSR 79 I V +SGG DSM + + F I +D + D + R Sbjct: 136 IAVCISGGKDSM---LMAKCFQELHKHSPVPFDVKYIVMDPGYSKENHDVIE---RNAQR 189 Query: 80 LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I + + R + +AK + I H +DD +ET+ Sbjct: 190 LNIPIEIFESDIFDNVFNIEKNPCYICARMRRGHLYNYAKNLGCNKIALGHHYDDVIETI 249 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWC 189 M G + M + + + + RP +DI+++ ++ + Sbjct: 250 LMSML-----YGGQIQTMMPKLHSNNFKGMEVIRPLYLIHEDDIKAWAKHNDLYFI 300 >gi|325123160|gb|ADY82683.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Acinetobacter calcoaceticus PHEA-2] Length = 301 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 21/268 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFEVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + R P N + R + ++ K+ + + N + Sbjct: 207 YAEIRQFPII--PCNLCGS-QENLQRAMLNEMLREWDKQYPKRLHSIFGALQNVSPSQLA 263 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267 ++ + + + L L Sbjct: 264 DRELFDFEALDSQRELDIKDPEELKNRL 291 >gi|134045267|ref|YP_001096753.1| PP-loop domain-containing protein [Methanococcus maripaludis C5] gi|132662892|gb|ABO34538.1| PP-loop domain protein [Methanococcus maripaludis C5] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 20/188 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + + +SGG DS+ + L+ + K AI V+ + D + C + Sbjct: 48 KVAMGLSGGKDSLVMAYLLNEFYKE--IPNSKIIAIMVNEGIEGYRLDGIEAAVKFCEKH 105 Query: 81 RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 I + +V +K+ + R +++ + + Sbjct: 106 DIEYKIVQFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDFLAIG 165 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD + V M +K L+ + ++ + + +P + +++ Sbjct: 166 HNLDDIAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIPEDEVLLLADMLE 222 Query: 186 ISWCEDPS 193 +++ + P Sbjct: 223 LTYHKSPC 230 >gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocardia farcinica IFM 10152] gi|61216446|sp|Q5Z2W1|TILS_NOCFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|54013860|dbj|BAD55230.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 318 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 74/192 (38%), Gaps = 17/192 (8%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG+DS+ ++ + A+ VDH L+ + + L + Sbjct: 25 LSGGADSL-------ALTAAAVVEAATVDALVVDHGLQPGSDAVAVAAAAQARTLGCRSA 77 Query: 86 VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 V GL AAAREARYA + + ++ HT DDQ ETV + R Sbjct: 78 RVLRVRVGSDGGLEAAAREARYAALGSARAGLP---VLLGHTLDDQAETVLLGLARGSGA 134 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 + + GM RP L RR D R ++ EDP N F RVR+R Sbjct: 135 R--SIRGMAAYTPPWG-----RPLLGVRRADTRRLCADLGLTPHEDPHNRSAEFTRVRLR 187 Query: 206 RFVRDIDLHALY 217 V + L Sbjct: 188 TEVLPLLEDVLG 199 >gi|120598865|ref|YP_963439.1| C32 tRNA thiolase [Shewanella sp. W3-18-1] gi|146293047|ref|YP_001183471.1| C32 tRNA thiolase [Shewanella putrefaciens CN-32] gi|205830630|sp|A4Y6T9|TTCA_SHEPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830631|sp|A1RJP0|TTCA_SHESW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120558958|gb|ABM24885.1| PP-loop domain protein [Shewanella sp. W3-18-1] gi|145564737|gb|ABP75672.1| PP-loop domain protein [Shewanella putrefaciens CN-32] Length = 310 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 22/200 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ + + A+++D + +++ +L++ + Sbjct: 44 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPGFPEDILPA--YLDKLKVPYH 99 Query: 86 VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 G + M +L D I RP CR +D+ + + P N Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANIVIRPLAYCREKDLEEYAQLKQFPII--PCNLCG 212 Query: 196 -DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 213 SQENLKRAAVKDMLNQWDRQ 232 >gi|300692819|ref|YP_003753814.1| ATP pyrophosphatase [Ralstonia solanacearum PSI07] gi|299079879|emb|CBJ52557.1| putative ATP pyrophosphatase [Ralstonia solanacearum PSI07] Length = 312 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 22/256 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + + +LV +SGG DS +L L ++ R+ K A+++D + ++V Sbjct: 25 FKMIEGGDTVLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP 82 Query: 73 VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 +L + + +V + R +I AK + A+ I Sbjct: 83 --TYLKKLGVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGASKIALG 140 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184 H DD + T ++ K M + D I RP C +DI ++ Sbjct: 141 HHRDDIVNTFFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIAAYARAM 195 Query: 185 NISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 P N + +R +V+ + + + F L+ V + +A Sbjct: 196 EFPII--PCNLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFSALQNVVPSHLADTELFD 253 Query: 242 LTVHMRSIIAISQDIL 257 + + I ++ L Sbjct: 254 FSGLTTGLAKIGEEAL 269 >gi|262195762|ref|YP_003266971.1| PP-loop domain protein [Haliangium ochraceum DSM 14365] gi|262079109|gb|ACY15078.1| PP-loop domain protein [Haliangium ochraceum DSM 14365] Length = 292 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 18/240 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS LL L +L R+ + + A++VD + + +++ + Sbjct: 53 GDRIMVCISGGKDSYALLEVL-RILQRRAPVRFELLAVNVD---QGWPGYDTAIIAEHLA 108 Query: 79 RLRIA-------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + V N P + R ++ A T I H DD Sbjct: 109 STGVPYRMITRDFASVVEANLAPGATPCSLCSRLRRGVLYNLAGEFACTKIALGHHADDL 168 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE- 190 +ET+ + G + D + RP + S+ +R Sbjct: 169 IETLMLNLM----YSGKLAAMPAKLHSDDGRNTVIRPLAYVPEALLSSYAQEREFPVVRC 224 Query: 191 -DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLIPKYLTVHMRS 248 PS +R V+R ++ ++ +K L +K + + + H R Sbjct: 225 GCPSCGLPEQKRQVVKRLLQSLEEADPGVKHHMLAALGNIKPSQLLDRALQGQADQHERG 284 >gi|327254039|gb|EGE65668.1| PP-loop family protein [Escherichia coli STEC_7v] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L I + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|323977023|gb|EGB72110.1| ydaO protein [Escherichia coli TW10509] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L I + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|323964520|gb|EGB59995.1| ydaO protein [Escherichia coli M863] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L I + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|300904997|ref|ZP_07122815.1| PP-loop family protein [Escherichia coli MS 84-1] gi|301305839|ref|ZP_07211924.1| PP-loop family protein [Escherichia coli MS 124-1] gi|300403146|gb|EFJ86684.1| PP-loop family protein [Escherichia coli MS 84-1] gi|300838929|gb|EFK66689.1| PP-loop family protein [Escherichia coli MS 124-1] gi|315254387|gb|EFU34355.1| PP-loop family protein [Escherichia coli MS 85-1] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGINHGSEVVNGGDLAFDREEI 284 >gi|153812311|ref|ZP_01964979.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174] gi|149831718|gb|EDM86805.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174] Length = 291 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 37/207 (17%) Query: 2 FLSPI-----ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 F PI +++R + LV I V +SGG DSM + + GK F Sbjct: 28 FRKPIWRRFTKAIREY--ELVQDGDKIAVCISGGKDSMLMAKLFQELS---RHGKKNFEV 82 Query: 56 I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102 + +++ + + D L + +V + + Sbjct: 83 VFLVMNPGYNEINY----------QTIKDNAQILNVPITVFESDIFNIVASEEQSPCYLC 132 Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R + AK + I H +DD +ET+ M + M + ++ Sbjct: 133 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-G 189 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWC 189 + + RP R DI + ++ + Sbjct: 190 MELIRPLYLIREADIIHWANYNDLHFI 216 >gi|241661692|ref|YP_002980052.1| C32 tRNA thiolase [Ralstonia pickettii 12D] gi|240863719|gb|ACS61380.1| PP-loop domain protein [Ralstonia pickettii 12D] Length = 315 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 22/247 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS +L L ++ R+ K A+++D + +EV + ++ Sbjct: 34 ILVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEEVLP--NYLKKVG 89 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + R +I AK + A I H DD + T Sbjct: 90 VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ K M + D I RP C +DI S+ P Sbjct: 150 FFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIASYARAMEFPII--PC 202 Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N + +R +V+ + + + F L+ V + +A + Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFASLQNVVPSHLADTDLFDFNGLTTGLA 262 Query: 251 AISQDIL 257 I +D L Sbjct: 263 KIGEDAL 269 >gi|237736916|ref|ZP_04567397.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817] gi|229420778|gb|EEO35825.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817] Length = 281 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 33/240 (13%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I++V+ F L+ I V VSGG DS+ L + DRS + + IS++ Sbjct: 39 KFIKAVKDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVAFISMNPGF 95 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117 A D ++ ++ L I + W+ + + G + R ++ + + Sbjct: 96 --GAMDMEQFKKNL-EELDIPCEIFDANVWEVAFREDPEGPCFLCAKMRRGVLYNKVEEL 152 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + + + RP + + +DI Sbjct: 153 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVSSTSGKMAVIRPLVYIKEKDI 208 Query: 178 RSFLLQRNIS------WCE----DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + I E D +R ++ + +I+ +K F ++ Sbjct: 209 IAYTQRNEIKAMSCGCPIESGKVDS-------KRKEIKNLLAEIEKANPNVKQSIFNSMK 261 >gi|77360792|ref|YP_340367.1| hypothetical protein PSHAa1852 [Pseudoalteromonas haloplanktis TAC125] gi|123588359|sp|Q3IHG8|TTCA_PSEHT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|76875703|emb|CAI86924.1| conserved protein of unknown function, contains adenine nucleotide alpha hydrolase domain [Pseudoalteromonas haloplanktis TAC125] Length = 304 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 22/198 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V F + I+V +SGG DS +L L + + IKF V+ L + Sbjct: 26 QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLDMLQHL---KRVAPIKFELFVVN--LDQKQ 79 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V +L + + +V + R ++ AK + Sbjct: 80 PGFPEHVLPQYLDKLNVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 AT I H DD +ET+++ G L M ++ D + RP C+ DI Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKESDI 194 Query: 178 RSFLLQRNISWCEDPSNT 195 + + P N Sbjct: 195 SQYAFVQGYPII--PCNL 210 >gi|218700064|ref|YP_002407693.1| C32 tRNA thiolase [Escherichia coli IAI39] gi|254790123|sp|B7NHP6|TTCA_ECO7I RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218370050|emb|CAR17826.1| putative C32 tRNA thiolase [Escherichia coli IAI39] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 +++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNRGDLAFDREEI 284 >gi|238796410|ref|ZP_04639919.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii ATCC 43969] gi|238719855|gb|EEQ11662.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii ATCC 43969] Length = 318 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L S+ A+++D + +++ Sbjct: 44 GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 99 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 100 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 159 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 160 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 213 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 214 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHNLFDFKGITHG 273 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 274 SEVVDGGDLAFDREEL 289 >gi|254292919|ref|YP_003058942.1| PP-loop domain protein [Hirschia baltica ATCC 49814] gi|254041450|gb|ACT58245.1| PP-loop domain protein [Hirschia baltica ATCC 49814] Length = 303 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 24/236 (10%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + P +V +SGG DS L+ AL + + G + + V+ L + ++ Sbjct: 61 AKKRETPYKWMVCLSGGKDSYTLMAALLDL---KWQGALPVDLLFVN--LDQGQPGFPKH 115 Query: 73 VS-DVCSRLRIAHSVVS------WKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124 + D + L + + +++ K P + A R ++ A+ I+ Sbjct: 116 ILPDYLTSLGVDYRIITEDTYSIVKEKTPAKATYCALCSRLRRGILYNAAREEGCDAIVL 175 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQ 183 H DD LET M L+ M T+L D + + RP L C DI F Sbjct: 176 GHHRDDALETFMMNLFHGGR-----LAAMPPTLLNDEGDIKVHRPLLHCAESDIERFSKA 230 Query: 184 RNISWCEDPSN---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 N P N T + +R +++ + + + A + F+ L+ + +A Sbjct: 231 MNFPII--PCNLCGTQEGLQRNAMKQMLNEWEQKAPGRRQTMFRALKNVRPSHLAD 284 >gi|331652394|ref|ZP_08353413.1| conserved hypothetical protein [Escherichia coli M718] gi|331050672|gb|EGI22730.1| conserved hypothetical protein [Escherichia coli M718] Length = 311 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKIKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|77747507|ref|NP_297859.2| C32 tRNA thiolase [Xylella fastidiosa 9a5c] gi|205830738|sp|Q9PFT8|TTCA_XYLFA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 299 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 I+V +SGG DS LL L + + + +A+++D + ++V + S Sbjct: 49 DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + H + V + L A R + +A+T T I H DD Sbjct: 104 SIGMPHHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 + T +M LSGM + D + RP DI ++ R Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|253995663|ref|YP_003047727.1| PP-loop domain-containing protein [Methylotenera mobilis JLW8] gi|253982342|gb|ACT47200.1| PP-loop domain protein [Methylotenera mobilis JLW8] Length = 301 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 22/216 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78 +LV +SGG DS +L+ L ++ +R+ K A+++D + + + Sbjct: 40 VLVCMSGGKDSHAMLMILLALQ-ERAPINFKLIAMNLD-QKQPGFPADILPAYF-----E 92 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + +V + R +I AK + A I H DD Sbjct: 93 KLGIDYRIVDADTYSIVKEKIPEGRTTCSLCSRLRRGVIYTTAKELGANKIALGHHRDDI 152 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190 +ET+++ K M D + RP C +DI S+ Q Sbjct: 153 VETLFLNLFFGAKMKAM----PPKLATNDKQNIVIRPLAYCSEKDIASYARQMEFPIIPC 208 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + + +R +V+ ++ + F+ + Sbjct: 209 DLCGSQENLQRQKVKDMLQAWEREQPGRINNIFRAI 244 >gi|170726762|ref|YP_001760788.1| C32 tRNA thiolase [Shewanella woodyi ATCC 51908] gi|205830632|sp|B1KFY6|TTCA_SHEWM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|169812109|gb|ACA86693.1| PP-loop domain protein [Shewanella woodyi ATCC 51908] Length = 319 Score = 89.2 bits (220), Expect = 1e-15, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 22/213 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L + R+ K + A+++D + +V L +A+ Sbjct: 44 LSGGKDSYAMLDILLDLQ-QRAPIKFEIVAVNLD-QKQPG---FPEHVLPAYLDSLGVAY 98 Query: 85 SVVS------WKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ ++ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 99 HILEKDTYSIVRDKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 G + + D + RP R +DI + + P N Sbjct: 159 NMF----FAGKQKAMPPKLLSDDGANMVIRPLAYAREKDIAEYAELKGFPII--PCNLCG 212 Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ + D+ F ++ Sbjct: 213 SQENLKRASVKEMLNQWDVEHPGRIESIFTAMQ 245 >gi|20094539|ref|NP_614386.1| ATPase [Methanopyrus kandleri AV19] gi|19887658|gb|AAM02316.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Methanopyrus kandleri AV19] Length = 303 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 17/247 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R I+VA+SGG DS L + + +++ A++VD + +R Sbjct: 43 RWFRPGQRIVVALSGGKDSSLALRLVTEYVE--PLPEVEVIALTVDEGISGFRDACLRAA 100 Query: 74 SDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123 V L + H VVS++ R L++ A+ + A +++ Sbjct: 101 ERVADELDVEHEVVSFEEEYGFALEEVVEDVDVSACTLCGVLRRRLLNRRARELGADVVV 160 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFL 181 T H DD+ + M + L+ + + + +L + +P ++R Sbjct: 161 TGHNLDDEAQAALMNFVK---ADLAQLARLHPEVRPEDDLIVPRVKPLRGVPEREVRWVA 217 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 + + + DP R R + +++ +K + L + + Sbjct: 218 EELGLPFHADPCPYARFSVRSFFREILDEMEERLPDVKFGLVRALDRAGPVLAEAFLEEG 277 Query: 242 LTVHMRS 248 L R Sbjct: 278 LGRCERC 284 >gi|253582348|ref|ZP_04859571.1| PP family ATPase [Fusobacterium varium ATCC 27725] gi|251835887|gb|EES64425.1| PP family ATPase [Fusobacterium varium ATCC 27725] Length = 267 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 33/240 (13%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ F +L+ I V VSGG DS+ L + DRS + + IS++ Sbjct: 22 KFVKAIKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117 A D ++ L I V + + R ++ + + Sbjct: 79 --EALDMEKF-KTNLEELGIPCEVFEANVWEIAFKEDPESPCFLCAKMRRGVLYNRVEEL 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + + + RP + + +DI Sbjct: 136 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 191 Query: 178 RSFLLQRNIS------WCE----DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + I E D +R ++ + ++ +K F ++ Sbjct: 192 IAYTQRNEIEAMGCGCPVESGKTDS-------KRKEIKNLLAKLEEQNPNVKQSIFNSMK 244 >gi|226356848|ref|YP_002786588.1| hypothetical protein Deide_18460 [Deinococcus deserti VCD115] gi|226318838|gb|ACO46834.1| Conserved hypothetical protein, precursor [Deinococcus deserti VCD115] Length = 300 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 17/189 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--R 71 R + ++V +SGG DS LL L + + + A+++D + +V R Sbjct: 37 RMIEEGDRVMVCLSGGKDSYTLLDVLLHLQRKAPI-RFEIVAVNLDQG-QPGFPQDVLPR 94 Query: 72 YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y++ + R I +SVV K + +T A R ++ HA+ I AT I H Sbjct: 95 YLTGMGVRHDILTQDTYSVVKEKTPEGKT-TCALCSRLRRGILYAHARRIGATKIALGHH 153 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD LET++M G L M + D + RP DI + R Sbjct: 154 RDDILETMFMNLF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVAESDIIRYAQAREF 208 Query: 187 SWCEDPSNT 195 P N Sbjct: 209 PII--PCNL 215 >gi|296314111|ref|ZP_06864052.1| PP-loop family protein [Neisseria polysaccharea ATCC 43768] gi|296839261|gb|EFH23199.1| PP-loop family protein [Neisseria polysaccharea ATCC 43768] Length = 319 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 90/274 (32%), Gaps = 33/274 (12%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F +++ P I+V +SGG DS LL L + + + A+++D + Sbjct: 24 DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79 Query: 66 AKDEVRYVSD----VCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114 + + + + +V + + R ++ A Sbjct: 80 ------FPEKVLPTYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTA 133 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCR 173 K + T I H DD L T+++ G L M ++ D + I RP + Sbjct: 134 KELGCTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNSEHIVIRPLAYVK 188 Query: 174 REDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 +D+ + + P N +R + +RD D F L+ V Sbjct: 189 EKDLIKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVV 246 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + +A R L DS + Sbjct: 247 PSHLADTELFDFVGLERGQSLKHGGDLAFDSEKM 280 >gi|295109785|emb|CBL23738.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ruminococcus obeum A2-162] Length = 383 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 37/207 (17%) Query: 2 FLSPI-----ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 F PI +++R + LV I V +SGG DSM + + GK F Sbjct: 120 FRKPIWRRFTKAIREY--ELVQDGDKIAVCISGGKDSMLMAKLFQELS---RHGKKNFEV 174 Query: 56 I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102 + +++ + + D L + +V + + Sbjct: 175 VFLVMNPGYNEINY----------QTIKDNAKILNVPITVFESDIFNIVASEEQSPCYLC 224 Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R + AK + I H +DD +ET+ M + M + ++ Sbjct: 225 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-G 281 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWC 189 + + RP R DI + ++ + Sbjct: 282 MELIRPLYLIREADIIHWANYNDLHFI 308 >gi|154505074|ref|ZP_02041812.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149] gi|153794553|gb|EDN76973.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149] Length = 391 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 12/192 (6%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F ++VR + + I V +SGG DSM + + F + + +D Sbjct: 131 LFSRFAKAVREY-ELVQEGDRIAVCISGGKDSMLMAKLFQELKKHNKFP-FEVEYLVMD- 187 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 ++ + + + I + + R + AK Sbjct: 188 --PGYSELNRKLIEQNAKMMGIPIKIFESDIFDAVFDVEKSPCYLCARMRRGHLYSKAKE 245 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I H +DD +ET+ M + M + ++ + + RP R +D Sbjct: 246 LGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDD 302 Query: 177 IRSFLLQRNISW 188 I+ + ++ + Sbjct: 303 IKHWRDYNHLHF 314 >gi|328866572|gb|EGG14956.1| hypothetical protein DFA_10830 [Dictyostelium fasciculatum] Length = 682 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Query: 90 KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 + +P T + R R L++ AK N+ I+ DD +ET R Q +G Sbjct: 262 EEGQPLTAIQEICRYKRLELLTSVAKKFNSPAILMGTNKDDNIETFIHRIQFASGIEG-- 319 Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L+ + ++ + RP L ++ + IS+ D +N FER R+R Sbjct: 320 LASIEPISPLSASISLHRPLLTFSKDSLFGLCNHFGISFNHDTANDSLDFERNRIR 375 >gi|328908035|gb|EGG27794.1| cell cycle protein MesJ [Propionibacterium sp. P08] Length = 230 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 19/208 (9%) Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 ++ HT DDQ E V + R + + + P L RR Sbjct: 31 GDEPVLLGHTLDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEIRRAQT 83 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNA 233 + + +DP N D RF R RVR + + L + + L + Sbjct: 84 VQACREWEVEPWQDPHNGDPRFLRSRVRTELMPVMAEVLGPGVAESLARSAALLAGEDQV 143 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293 VA + H S +S + +++ L +++ ++ V+ Sbjct: 144 VARAARVWADEHGVSSDELS-GLCGVEAGLARRVVKEWL-------PEARMVHVDSVLGL 195 Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRA 321 L+ V + ++ R L++TR Sbjct: 196 LEGPGGAGVDVPGGRVEVRRGTLYLTRR 223 >gi|149913109|ref|ZP_01901643.1| ATPase of the PP superfamily protein [Roseobacter sp. AzwK-3b] gi|149813515|gb|EDM73341.1| ATPase of the PP superfamily protein [Roseobacter sp. AzwK-3b] Length = 289 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R + A ++D + + + Sbjct: 44 KGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + H + V A R + A+ + ++ H DD Sbjct: 100 EKMGVPHRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + ++++ RP D F Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLLNEEGDVFVYRPLSFVAEADCEKFANSMG 210 >gi|242398445|ref|YP_002993869.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] gi|242264838|gb|ACS89520.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739] Length = 302 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 63/203 (31%), Gaps = 23/203 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++ + L +LV +SGG DS L + + ++ Sbjct: 30 FEKKVKKTIDKYKLLKASEKVLVVISGGKDSAVTAYVLKKL-------GYDVECLHINLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISE 112 + ++ Y C + + VV + R RY + ++ Sbjct: 83 IGGYSEKSEEYAKKQCELMGVPLYVVRVRELLGAGIGEVRTRRPACSYCGLTKRY-IFNK 141 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170 A +I T H DD+ + + ++ + + +L ++ +P Sbjct: 142 FAYDNGFGVIATGHNLDDEA-SFIFSNLMNWNTEYLA---KQGPVLPGEGTFVKKIKPLY 197 Query: 171 RCRREDIRSFLLQRNISWCEDPS 193 ++ ++ L + + + Sbjct: 198 GLTEREVVAYALAVGLEYIINEC 220 >gi|170702531|ref|ZP_02893409.1| PP-loop domain protein [Burkholderia ambifaria IOP40-10] gi|170132569|gb|EDT01019.1| PP-loop domain protein [Burkholderia ambifaria IOP40-10] Length = 332 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 25/244 (10%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 42 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 101 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD L+T+ + KGM D D + RP Sbjct: 157 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 212 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ F R P N +R ++ +RD D F L Sbjct: 213 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 270 Query: 227 RVKV 230 V Sbjct: 271 ANVV 274 >gi|160875323|ref|YP_001554639.1| C32 tRNA thiolase [Shewanella baltica OS195] gi|160860845|gb|ABX49379.1| PP-loop domain protein [Shewanella baltica OS195] gi|315267518|gb|ADT94371.1| PP-loop domain protein [Shewanella baltica OS678] Length = 322 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 56 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 110 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195 G + M +L D + RP CR +D+ + R P N Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223 Query: 196 --DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244 >gi|324117461|gb|EGC11367.1| ydaO protein [Escherichia coli E1167] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|320659159|gb|EFX26751.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O55:H7 str. USDA 5905] Length = 307 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 24 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 79 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 80 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 137 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 138 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 193 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 194 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 251 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 252 DTNLFDFKGITHGSEVVNGGDLAFDREEI 280 >gi|320653570|gb|EFX21675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 308 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 25 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 80 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 81 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 138 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 139 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 194 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 195 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 252 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 253 DTNLFDFKGITHGSEVVNGGDLAFDREEI 281 >gi|320189894|gb|EFW64546.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC1212] gi|320637248|gb|EFX07074.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H7 str. G5101] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|307137986|ref|ZP_07497342.1| C32 tRNA thiolase [Escherichia coli H736] gi|331641911|ref|ZP_08343046.1| conserved hypothetical protein [Escherichia coli H736] gi|331038709|gb|EGI10929.1| conserved hypothetical protein [Escherichia coli H736] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|307309897|ref|ZP_07589547.1| PP-loop domain protein [Escherichia coli W] gi|306909615|gb|EFN40109.1| PP-loop domain protein [Escherichia coli W] gi|315060598|gb|ADT74925.1| predicted C32 tRNA thiolase [Escherichia coli W] gi|323378839|gb|ADX51107.1| PP-loop domain protein [Escherichia coli KO11] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|300822486|ref|ZP_07102625.1| PP-loop family protein [Escherichia coli MS 119-7] gi|331677133|ref|ZP_08377829.1| conserved hypothetical protein [Escherichia coli H591] gi|300524902|gb|EFK45971.1| PP-loop family protein [Escherichia coli MS 119-7] gi|331075822|gb|EGI47120.1| conserved hypothetical protein [Escherichia coli H591] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|291282439|ref|YP_003499257.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615] gi|290762312|gb|ADD56273.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|260598076|ref|YP_003210647.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Cronobacter turicensis z3032] gi|260217253|emb|CBA31174.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Cronobacter turicensis z3032] Length = 310 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 91/281 (32%), Gaps = 22/281 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 AALGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSQAKGFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTELFDFKGIHH 267 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 ++ L D + + A + +E Sbjct: 268 GSEVVNGGDLAFDREEIPMMPTGWAPEDEEAPPMQRLDVLE 308 >gi|256022942|ref|ZP_05436807.1| C32 tRNA thiolase [Escherichia sp. 4_1_40B] gi|300948430|ref|ZP_07162532.1| PP-loop family protein [Escherichia coli MS 116-1] gi|300954598|ref|ZP_07167043.1| PP-loop family protein [Escherichia coli MS 175-1] gi|301647155|ref|ZP_07246976.1| PP-loop family protein [Escherichia coli MS 146-1] gi|300318432|gb|EFJ68216.1| PP-loop family protein [Escherichia coli MS 175-1] gi|300452054|gb|EFK15674.1| PP-loop family protein [Escherichia coli MS 116-1] gi|301074641|gb|EFK89447.1| PP-loop family protein [Escherichia coli MS 146-1] gi|332343043|gb|AEE56377.1| C32 tRNA thiolase [Escherichia coli UMNK88] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|218694920|ref|YP_002402587.1| C32 tRNA thiolase [Escherichia coli 55989] gi|254789877|sp|B7L5B2|TTCA_ECO55 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218351652|emb|CAU97367.1| putative C32 tRNA thiolase [Escherichia coli 55989] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|126737057|ref|ZP_01752792.1| hypothetical protein RSK20926_11519 [Roseobacter sp. SK209-2-6] gi|126721642|gb|EBA18345.1| hypothetical protein RSK20926_11519 [Roseobacter sp. SK209-2-6] Length = 295 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 16/214 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL LH + R ++ A ++D + + + ++ Sbjct: 53 KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFLEKM 108 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + + A R + A+ + ++ H DD LE Sbjct: 109 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 168 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 T +M G + + + +L++ RP ED F N D Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEEDCEKFAKAMNYPIIPCDL 224 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R +V++ + + ++ + F+ L Sbjct: 225 CGSQDGLQRQQVKQILDQWEKNSPGRRQIMFRAL 258 >gi|113866291|ref|YP_724780.1| ATPase [Ralstonia eutropha H16] gi|122947186|sp|Q0KF09|TTCA_RALEH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|113525067|emb|CAJ91412.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Ralstonia eutropha H16] Length = 314 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 24/277 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80 +LV +SGG DS +L L ++ R+ K K A+++D + ++ + + Sbjct: 34 VLVCMSGGKDSYTMLSVLMALQK-RAPIKFKLIAMNLD-QKQPG---FPEHILPEYLKSV 88 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + R +I AK + A I H DD ++ Sbjct: 89 GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVQ 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192 T ++ G + M + D I RP C +DI S+ P Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLSTDDGQHIVIRPLAYCSEKDIASYARAMEFPII--P 201 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 N + +R +V ++D + F LR V + +A T + Sbjct: 202 CNLCGSQENLQRKKVSEMLQDWERQNPGRIDNIFSALRNVVPSHLADTDLFPFTGLATGL 261 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + L ++T L + + ++ + Sbjct: 262 AKVDEASLFGETTFQQQPLMFAGNVEENRMEFVRFER 298 >gi|16129305|ref|NP_415860.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|89108192|ref|AP_001972.1| predicted C32 tRNA thiolase [Escherichia coli str. K-12 substr. W3110] gi|170081023|ref|YP_001730343.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli str. K-12 substr. DH10B] gi|238900579|ref|YP_002926375.1| putative C32 tRNA thiolase [Escherichia coli BW2952] gi|301022681|ref|ZP_07186534.1| PP-loop family protein [Escherichia coli MS 196-1] gi|2495598|sp|P76055|TTCA_ECOLI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830582|sp|B1XCH3|TTCA_ECODH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|259550623|sp|C4ZV92|TTCA_ECOBW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|1787606|gb|AAC74426.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|85674916|dbj|BAE76407.1| predicted C32 tRNA thiolase [Escherichia coli str. K12 substr. W3110] gi|169888858|gb|ACB02565.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli str. K-12 substr. DH10B] gi|238862182|gb|ACR64180.1| predicted C32 tRNA thiolase [Escherichia coli BW2952] gi|260449521|gb|ACX39943.1| PP-loop domain protein [Escherichia coli DH1] gi|299881169|gb|EFI89380.1| PP-loop family protein [Escherichia coli MS 196-1] gi|315135985|dbj|BAJ43144.1| C32 tRNA thiolase [Escherichia coli DH1] gi|323937670|gb|EGB33938.1| ydaO protein [Escherichia coli E1520] gi|323942291|gb|EGB38462.1| ydaO protein [Escherichia coli E482] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|157159153|ref|YP_001462653.1| C32 tRNA thiolase [Escherichia coli E24377A] gi|157160856|ref|YP_001458174.1| C32 tRNA thiolase [Escherichia coli HS] gi|168749012|ref|ZP_02774034.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113] gi|168756029|ref|ZP_02781036.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401] gi|168769430|ref|ZP_02794437.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486] gi|168775173|ref|ZP_02800180.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196] gi|168782878|ref|ZP_02807885.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076] gi|168788326|ref|ZP_02813333.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869] gi|168799658|ref|ZP_02824665.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508] gi|170020290|ref|YP_001725244.1| C32 tRNA thiolase [Escherichia coli ATCC 8739] gi|188491839|ref|ZP_02999109.1| PP-loop family protein [Escherichia coli 53638] gi|191165079|ref|ZP_03026923.1| PP-loop family protein [Escherichia coli B7A] gi|193066928|ref|ZP_03047897.1| PP-loop family protein [Escherichia coli E110019] gi|194426010|ref|ZP_03058566.1| PP-loop family protein [Escherichia coli B171] gi|195938013|ref|ZP_03083395.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024] gi|208810905|ref|ZP_03252738.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206] gi|208815195|ref|ZP_03256374.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045] gi|208820138|ref|ZP_03260458.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042] gi|209398638|ref|YP_002270404.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115] gi|218553904|ref|YP_002386817.1| C32 tRNA thiolase [Escherichia coli IAI1] gi|218704864|ref|YP_002412383.1| C32 tRNA thiolase [Escherichia coli UMN026] gi|254792939|ref|YP_003077776.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14359] gi|256018402|ref|ZP_05432267.1| C32 tRNA thiolase [Shigella sp. D9] gi|260843692|ref|YP_003221470.1| putative C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009] gi|261224338|ref|ZP_05938619.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli O157:H7 str. FRIK2000] gi|293404873|ref|ZP_06648865.1| C32 tRNA thiolase [Escherichia coli FVEC1412] gi|298380517|ref|ZP_06990116.1| C32 tRNA thiolase [Escherichia coli FVEC1302] gi|300900109|ref|ZP_07118303.1| PP-loop family protein [Escherichia coli MS 198-1] gi|300927859|ref|ZP_07143421.1| PP-loop family protein [Escherichia coli MS 187-1] gi|300937577|ref|ZP_07152391.1| PP-loop family protein [Escherichia coli MS 21-1] gi|309797092|ref|ZP_07691490.1| PP-loop family protein [Escherichia coli MS 145-7] gi|312971542|ref|ZP_07785717.1| PP-loop family protein [Escherichia coli 1827-70] gi|331667743|ref|ZP_08368607.1| conserved hypothetical protein [Escherichia coli TA271] gi|331682839|ref|ZP_08383458.1| conserved hypothetical protein [Escherichia coli H299] gi|332279456|ref|ZP_08391869.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9] gi|205830581|sp|A7ZLH4|TTCA_ECO24 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830583|sp|A7ZZT7|TTCA_ECOHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830585|sp|B1ISR7|TTCA_ECOLC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789878|sp|B5Z0R4|TTCA_ECO5E RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790125|sp|B7LYL5|TTCA_ECO8A RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790126|sp|B7N4F3|TTCA_ECOLU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|121486021|gb|ABM54890.1| ATPase [Escherichia coli] gi|157066536|gb|ABV05791.1| PP-loop family protein [Escherichia coli HS] gi|157081183|gb|ABV20891.1| PP-loop family protein [Escherichia coli E24377A] gi|169755218|gb|ACA77917.1| PP-loop domain protein [Escherichia coli ATCC 8739] gi|187769348|gb|EDU33192.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196] gi|188016561|gb|EDU54683.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113] gi|188487038|gb|EDU62141.1| PP-loop family protein [Escherichia coli 53638] gi|188999726|gb|EDU68712.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076] gi|189356826|gb|EDU75245.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401] gi|189361597|gb|EDU80016.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486] gi|189371828|gb|EDU90244.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869] gi|189377987|gb|EDU96403.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508] gi|190904851|gb|EDV64556.1| PP-loop family protein [Escherichia coli B7A] gi|192959518|gb|EDV89952.1| PP-loop family protein [Escherichia coli E110019] gi|194416065|gb|EDX32331.1| PP-loop family protein [Escherichia coli B171] gi|208724411|gb|EDZ74119.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206] gi|208731843|gb|EDZ80531.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045] gi|208740261|gb|EDZ87943.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042] gi|209160038|gb|ACI37471.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115] gi|218360672|emb|CAQ98233.1| putative C32 tRNA thiolase [Escherichia coli IAI1] gi|218431961|emb|CAR12846.1| putative C32 tRNA thiolase [Escherichia coli UMN026] gi|254592339|gb|ACT71700.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli O157:H7 str. TW14359] gi|257758839|dbj|BAI30336.1| predicted C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009] gi|291427081|gb|EFF00108.1| C32 tRNA thiolase [Escherichia coli FVEC1412] gi|298277959|gb|EFI19473.1| C32 tRNA thiolase [Escherichia coli FVEC1302] gi|300356388|gb|EFJ72258.1| PP-loop family protein [Escherichia coli MS 198-1] gi|300457385|gb|EFK20878.1| PP-loop family protein [Escherichia coli MS 21-1] gi|300464144|gb|EFK27637.1| PP-loop family protein [Escherichia coli MS 187-1] gi|308119262|gb|EFO56524.1| PP-loop family protein [Escherichia coli MS 145-7] gi|310336139|gb|EFQ01339.1| PP-loop family protein [Escherichia coli 1827-70] gi|315619432|gb|EFU99976.1| PP-loop family protein [Escherichia coli 3431] gi|320199385|gb|EFW73976.1| C32 tRNA thiolase [Escherichia coli EC4100B] gi|323162443|gb|EFZ48295.1| PP-loop family protein [Escherichia coli E128010] gi|323185488|gb|EFZ70849.1| PP-loop family protein [Escherichia coli 1357] gi|323947686|gb|EGB43689.1| PP-loop family protein [Escherichia coli H120] gi|324021226|gb|EGB90445.1| PP-loop family protein [Escherichia coli MS 117-3] gi|326340987|gb|EGD64780.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1125] gi|331065328|gb|EGI37223.1| conserved hypothetical protein [Escherichia coli TA271] gi|331080470|gb|EGI51649.1| conserved hypothetical protein [Escherichia coli H299] gi|332101808|gb|EGJ05154.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|193062617|ref|ZP_03043711.1| protein YdaO [Escherichia coli E22] gi|293433707|ref|ZP_06662135.1| C32 tRNA thiolase [Escherichia coli B088] gi|192931739|gb|EDV84339.1| protein YdaO [Escherichia coli E22] gi|284921219|emb|CBG34285.1| conserved hypothetical protein [Escherichia coli 042] gi|291324526|gb|EFE63948.1| C32 tRNA thiolase [Escherichia coli B088] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|126090134|ref|YP_001041615.1| hypothetical protein Sbal_4497 [Shewanella baltica OS155] gi|126174427|ref|YP_001050576.1| C32 tRNA thiolase [Shewanella baltica OS155] gi|205830626|sp|A3D4P4|TTCA_SHEB5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|125997632|gb|ABN61707.1| PP-loop domain protein [Shewanella baltica OS155] gi|125999790|gb|ABN63860.1| hypothetical protein Sbal_4497 [Shewanella baltica OS155] Length = 310 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 44 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 98 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 99 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195 G + M +L D + RP CR +D+ + + P N Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLKEFPII--PCNLC 211 Query: 196 --DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 212 GSQENLKRAAVKDMLNQWDRQ 232 >gi|15801821|ref|NP_287839.1| C32 tRNA thiolase [Escherichia coli O157:H7 EDL933] gi|15831182|ref|NP_309955.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. Sakai] gi|74312284|ref|YP_310703.1| C32 tRNA thiolase [Shigella sonnei Ss046] gi|168762635|ref|ZP_02787642.1| protein YdaO [Escherichia coli O157:H7 str. EC4501] gi|194437000|ref|ZP_03069099.1| protein YdaO [Escherichia coli 101-1] gi|209918589|ref|YP_002292673.1| C32 tRNA thiolase [Escherichia coli SE11] gi|217329161|ref|ZP_03445241.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588] gi|253773654|ref|YP_003036485.1| C32 tRNA thiolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161423|ref|YP_003044531.1| C32 tRNA thiolase [Escherichia coli B str. REL606] gi|260855043|ref|YP_003228934.1| putative C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368] gi|260867792|ref|YP_003234194.1| putative C32 tRNA thiolase [Escherichia coli O111:H- str. 11128] gi|293414670|ref|ZP_06657319.1| C32 tRNA thiolase [Escherichia coli B185] gi|331662754|ref|ZP_08363677.1| conserved hypothetical protein [Escherichia coli TA143] gi|331672873|ref|ZP_08373659.1| conserved hypothetical protein [Escherichia coli TA280] gi|81765103|sp|Q8X8Q5|TTCA_ECO57 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123617055|sp|Q3Z194|TTCA_SHISS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790127|sp|B6IA61|TTCA_ECOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|12515408|gb|AAG56453.1|AE005371_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361393|dbj|BAB35351.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73855761|gb|AAZ88468.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|189367043|gb|EDU85459.1| protein YdaO [Escherichia coli O157:H7 str. EC4501] gi|194423983|gb|EDX39971.1| protein YdaO [Escherichia coli 101-1] gi|209911848|dbj|BAG76922.1| conserved hypothetical protein [Escherichia coli SE11] gi|217317600|gb|EEC26028.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588] gi|242377120|emb|CAQ31848.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)] gi|253324698|gb|ACT29300.1| PP-loop domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973324|gb|ACT38995.1| predicted C32 tRNA thiolase [Escherichia coli B str. REL606] gi|253977537|gb|ACT43207.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)] gi|257753692|dbj|BAI25194.1| predicted C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368] gi|257764148|dbj|BAI35643.1| predicted C32 tRNA thiolase [Escherichia coli O111:H- str. 11128] gi|291434728|gb|EFF07701.1| C32 tRNA thiolase [Escherichia coli B185] gi|320180213|gb|EFW55148.1| C32 tRNA thiolase [Shigella boydii ATCC 9905] gi|320642614|gb|EFX11862.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H- str. 493-89] gi|320647967|gb|EFX16675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H- str. H 2687] gi|323153564|gb|EFZ39815.1| PP-loop family protein [Escherichia coli EPECa14] gi|323168226|gb|EFZ53912.1| PP-loop family protein [Shigella sonnei 53G] gi|323179692|gb|EFZ65253.1| PP-loop family protein [Escherichia coli 1180] gi|323962411|gb|EGB57994.1| ydaO protein [Escherichia coli H489] gi|323973546|gb|EGB68731.1| ydaO protein [Escherichia coli TA007] gi|326343225|gb|EGD66992.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1044] gi|331061176|gb|EGI33140.1| conserved hypothetical protein [Escherichia coli TA143] gi|331070094|gb|EGI41463.1| conserved hypothetical protein [Escherichia coli TA280] gi|332091755|gb|EGI96835.1| PP-loop family protein [Shigella boydii 5216-82] Length = 311 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|226945379|ref|YP_002800452.1| C32 tRNA thiolase [Azotobacter vinelandii DJ] gi|259550618|sp|C1DPQ6|TTCA_AZOVD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|226720306|gb|ACO79477.1| PP-loop ATPase protein [Azotobacter vinelandii DJ] Length = 274 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 21/240 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+V F + ++V +SGG DS +L L + G + A+++D + Sbjct: 21 EAVTDF-NMIEEGDKVMVCLSGGKDSYTMLDVLLYLQKVAPIG-FEIVAVNMD-QKQPGF 77 Query: 67 KDEV--RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 +EV Y+ + I +SVV K + +T + R + A I AT Sbjct: 78 PEEVLPTYLKSIGVDYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADRIGAT 136 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRS 179 + H DD LET ++ G L M +L D + RP C DI + Sbjct: 137 KMALGHHRDDILETFFLNLF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCSETDIEA 191 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + + P N + +R V+ +R+ + + F+ L+ + +A Sbjct: 192 YAKLKEFPII--PCNLCGSQENLQRQVVKEMLREWERQSPGRTEIMFRALQNVHPSQLAD 249 >gi|18976645|ref|NP_578002.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus DSM 3638] gi|18892216|gb|AAL80397.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM 3638] Length = 283 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 39/258 (15%), Positives = 81/258 (31%), Gaps = 58/258 (22%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE + + ILVAVSGG DS L + K + ++ + Sbjct: 18 RTIEKYKLASKD----ERILVAVSGGKDSAVTAYVLKKL-------GYKIECLHLNLGIG 66 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112 E ++ Y C + +++ K S+P RY ++++ Sbjct: 67 EYSEKSEIYAKKQCEFIGAPLNIIRVKELLGYGIGEVRTSRPTCSYCGL--TKRY-IMNK 123 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170 A + T H DD+ + M + + + + G +L ++ +P Sbjct: 124 FAYDNGFDAVATGHNLDDEA-SFLMNNLLHWNTEYLAKGG---PLLPGEGKFVKKIKPLY 179 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER-----------------------VRVRRF 207 ++ ++ + + + + + R VR F Sbjct: 180 ELTEREVVAYAIAVGLEYIVEECP----YARGATTLDMKEVLNELEEKRPGTKFNFVRGF 235 Query: 208 VRDIDLHALYLKMKKFQD 225 +R L +K K ++ Sbjct: 236 LRKKKLFEPEVKGKDLKE 253 >gi|218548977|ref|YP_002382768.1| C32 tRNA thiolase [Escherichia fergusonii ATCC 35469] gi|254790129|sp|B7LRU9|TTCA_ESCF3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|218356518|emb|CAQ89141.1| putative C32 tRNA thiolase [Escherichia fergusonii ATCC 35469] Length = 311 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI+ F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGIKH 267 Query: 248 SIIAISQDILNIDSTLL 264 I+ L D L Sbjct: 268 GFEVINGGDLAFDREEL 284 >gi|320664063|gb|EFX31250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli O157:H7 str. LSU-61] Length = 303 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 20 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 75 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 76 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 133 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 134 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 189 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 190 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 247 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 248 DTNLFDFKGITHGSEVVNGGDLAFDREEI 276 >gi|192359196|ref|YP_001982540.1| hypothetical protein CJA_2075 [Cellvibrio japonicus Ueda107] gi|254789871|sp|B3PID5|TTCA_CELJU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|190685361|gb|ACE83039.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107] Length = 302 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 21/211 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L S+ + + A+++D + +V + Sbjct: 37 GDKVMVCLSGGKDSYTMLDILLSLQQTAPI-RFELVAVNMD-QKQPG---FPEHVLPNYL 91 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L + ++ R + A I AT I H DD Sbjct: 92 AQLGVPFHIIERDTYSIVKEVVPEGKTTCGLCSRLRRGTLYGFADEIGATKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ K M + D D + RP C EDI F + Sbjct: 152 IIETLFLNMFYGGKLKAMPPKLLSD----DKRNIVIRPLAYCAEEDIAEFARLKGFPII- 206 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 P N + R+ V+++ LHA + Sbjct: 207 -PCNLCGS-QENLQRQAVKEM-LHAWERQFP 234 >gi|331002999|ref|ZP_08326511.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413043|gb|EGG92418.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon 107 str. F0167] Length = 382 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I V +SGG DSM + +L + + ++ D++ Y + D Sbjct: 143 GDKIAVCISGGKDSMLMAKLFQELLK-HGKRNFELVFLVMN----PG-YDDINYRTIVDN 196 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + V ++ + R + AK + I H FDD + Sbjct: 197 AKLLDVPIVVFESSIYDIVAEDEKSPCYLCARMRRGHLYAKAKELGCNKIALGHHFDDVI 256 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET+ M G + M + + + RP R EDI + +++ Sbjct: 257 ETIVMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREEDIIHWAKYNQLNFIR 311 Query: 191 DPS----NTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 N R V++ +R++ Y++ F+ + + V Sbjct: 312 CACRLTDNCSISETGDKGSMRAEVKKLIRELAAKNPYIEKNIFRSVENVSLDTV 365 >gi|167032255|ref|YP_001667486.1| C32 tRNA thiolase [Pseudomonas putida GB-1] gi|205830615|sp|B0KT32|TTCA_PSEPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|166858743|gb|ABY97150.1| PP-loop domain protein [Pseudomonas putida GB-1] Length = 274 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + IKF ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|47217570|emb|CAG02497.1| unnamed protein product [Tetraodon nigroviridis] Length = 300 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 12/171 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L + +L++R + +SVD + D + V + Sbjct: 53 VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A + I T H DD Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ETV M R + + + + ++I + Sbjct: 172 VAETVLMNVLRGDIARLRAVPPSPQPARATGSSRAASRLKYAYEKEIVLYA 222 >gi|302670988|ref|YP_003830948.1| PP-loop family protein [Butyrivibrio proteoclasticus B316] gi|302395461|gb|ADL34366.1| PP-loop family protein [Butyrivibrio proteoclasticus B316] Length = 287 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 11/175 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM L + GK F I + + + + Sbjct: 41 GDKIAVCISGGKDSMLLAKLFQELA---RHGKHNFEVIFLA-MNPGYSDANYQNILRNAE 96 Query: 79 RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + I ++ +K R + A+ + I H FDD +ET Sbjct: 97 LMNIPLTIFESDIFDVTTKVGGSPCYLCARMRRGALYSKAQELGCNKIALGHHFDDVIET 156 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ++M + M + + T + + RP R EDI ++ + + Sbjct: 157 IFMAMMYGGQIQTM-MPKLHSTNF--KGMELIRPLYLVREEDIVHWMNYNELKFI 208 >gi|104780539|ref|YP_607037.1| C32 tRNA thiolase [Pseudomonas entomophila L48] gi|205830612|sp|Q1IDN2|TTCA_PSEE4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|95109526|emb|CAK14227.1| putative PP-loop ATPase [Pseudomonas entomophila L48] Length = 274 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + IKF ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFDIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|301326916|ref|ZP_07220210.1| PP-loop family protein [Escherichia coli MS 78-1] gi|300846468|gb|EFK74228.1| PP-loop family protein [Escherichia coli MS 78-1] Length = 311 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFADAKAFPII--PCNL 212 >gi|300819436|ref|ZP_07099632.1| PP-loop family protein [Escherichia coli MS 107-1] gi|300527935|gb|EFK48997.1| PP-loop family protein [Escherichia coli MS 107-1] Length = 243 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFADAKAFPII--PCNL 212 >gi|300926735|ref|ZP_07142510.1| PP-loop family protein [Escherichia coli MS 182-1] gi|300417311|gb|EFK00622.1| PP-loop family protein [Escherichia coli MS 182-1] Length = 311 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFADAKAFPII--PCNL 212 >gi|215486638|ref|YP_002329069.1| C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69] gi|312966725|ref|ZP_07780943.1| PP-loop family protein [Escherichia coli 2362-75] gi|254789875|sp|B7URE9|TTCA_ECO27 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|215264710|emb|CAS09084.1| predicted C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69] gi|312288189|gb|EFR16091.1| PP-loop family protein [Escherichia coli 2362-75] Length = 311 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFADAKAFPII--PCNL 212 >gi|205830651|sp|A9L1D4|TTCA_SHEB9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 310 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 21/179 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 44 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 98 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 99 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + M +L D + RP CR +D+ + R P N Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNL 210 >gi|82776711|ref|YP_403060.1| C32 tRNA thiolase [Shigella dysenteriae Sd197] gi|309788962|ref|ZP_07683557.1| PP-loop family protein [Shigella dysenteriae 1617] gi|123562717|sp|Q32GI6|TTCA_SHIDS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|81240859|gb|ABB61569.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923233|gb|EFP68745.1| PP-loop family protein [Shigella dysenteriae 1617] Length = 311 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLLEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFADAKAFPII--PCNL 212 >gi|83745936|ref|ZP_00942992.1| tRNA s2C32 biosynthesis protein TtcA [Ralstonia solanacearum UW551] gi|207727654|ref|YP_002256048.1| cog0037, predicted atpase of the pp-loop superfamily protein [Ralstonia solanacearum MolK2] gi|207742047|ref|YP_002258439.1| cog0037, predicted atpase of the pp-loop superfamily protein [Ralstonia solanacearum IPO1609] gi|83727330|gb|EAP74452.1| tRNA s2C32 biosynthesis protein TtcA [Ralstonia solanacearum UW551] gi|206590893|emb|CAQ56505.1| cog0037, predicted atpase of the pp-loop superfamily protein [Ralstonia solanacearum MolK2] gi|206593433|emb|CAQ60360.1| cog0037, predicted atpase of the pp-loop superfamily protein [Ralstonia solanacearum IPO1609] Length = 312 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 22/247 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS +L L ++ R+ K A+++D + ++V + ++ Sbjct: 34 VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + R +I AK + A I H DD + T Sbjct: 90 VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ G + M + D I RP C ++I ++ P Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIAAYARAMEFPII--PC 202 Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N + +R +V+ + + + A F L+ V + +A + + Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFAALQNVVPSHLADTGLFDFSGLATGLA 262 Query: 251 AISQDIL 257 I ++ L Sbjct: 263 RIGEEAL 269 >gi|114330769|ref|YP_746991.1| PP-loop domain-containing protein [Nitrosomonas eutropha C91] gi|122314289|sp|Q0AI06|TTCA_NITEC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|114307783|gb|ABI59026.1| tRNA s(2)C-32 sulfurtransferase [Nitrosomonas eutropha C91] Length = 313 Score = 88.8 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 24/259 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 I+V +SGG DS LL L ++ + + A+++D + +V Sbjct: 37 SGDRIMVCLSGGKDSYALLDILRNLQAHAPL-DFELIAVNLD-QKQPG---FPEHVLPGY 91 Query: 77 CSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 S + + +V + + R ++ A + AT I H D Sbjct: 92 LSEINMPFRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGVLYRVATELGATKIALGHHRD 151 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D LET ++ G L M ++ D + RP C+ +D+ ++ Sbjct: 152 DILETFFLNMF-----YGGKLKAMPPKLVSDDGCHVVIRPLAYCKEKDLAAYAQLVQFPI 206 Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245 P N +R ++ ++ + F L+ + +A Sbjct: 207 I--PCNLCGSQPNLQRQVIKEMMQQWNKKYPGRLETMFTALQNIQLSHLADTSRYDFVGI 264 Query: 246 MRSIIAISQDILNIDSTLL 264 IA + D LL Sbjct: 265 KPHGIATEEGDKAFDEELL 283 >gi|167947098|ref|ZP_02534172.1| PP-loop [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 148 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 4/111 (3%) Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+ ++ R G+ + + RP L R + ++ Q+ + W EDP Sbjct: 5 ETLLLQLLRGSGPAGLAAMPRIAPL---GQGRLVRPLLDFPRSALEAYAHQQGLQWLEDP 61 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 SN +F+R +R V + L A + + LI + + Sbjct: 62 SNAQLQFDRNYLRHRVVPM-LKARWPAADATLSRSASLCGDAQQLIDELVA 111 >gi|330941398|gb|EGH44224.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. pisi str. 1704B] gi|330980171|gb|EGH78353.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 274 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|170720389|ref|YP_001748077.1| C32 tRNA thiolase [Pseudomonas putida W619] gi|205830616|sp|B1J1K3|TTCA_PSEPW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|169758392|gb|ACA71708.1| PP-loop domain protein [Pseudomonas putida W619] Length = 274 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + IKF ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + + KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGSLKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|257091915|ref|YP_003165556.1| PP-loop domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044439|gb|ACV33627.1| PP-loop domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 294 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 20/225 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 +LV VSGG DS LL L ++ +R+ + A+++D + EV Y++ + Sbjct: 34 VLVCVSGGKDSHTLLSLLIAL-RERAPVNFRVIAMNLD-QKQPGFPAEVLPDYLAKIGVD 91 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI ++VV K + +T + R +I AK + A I H DD + T+ Sbjct: 92 YRIVEQDTYAVVKDKIPEGKT-TCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVHTL 150 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ G L M + D + RP CR DI F P N Sbjct: 151 FLNLF-----FGGQLKAMPPKLRTDDGCHVVIRPLAYCRESDIARFARGMEYPII--PCN 203 Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 D +R ++R + D D F L+ V + +A Sbjct: 204 LCGSQDNLQRQKIREMMADWDQRYPGRTDVVFSALQKVVPSHLAD 248 >gi|237731651|ref|ZP_04562132.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp. 30_2] gi|226907190|gb|EEH93108.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp. 30_2] Length = 311 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 89/266 (33%), Gaps = 40/266 (15%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 I+V +SGG DS +L L ++ I FS ++V+ H L E Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQS---APISFSLVAVNLDQKQPGFPGHILPE---- 91 Query: 69 EVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATL 121 +L + + +V K+ P+ + R ++ A + AT Sbjct: 92 -------YLEQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATK 144 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 I H DD L+T+++ KGM M D D + RP CR +DI F Sbjct: 145 IALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFS 200 Query: 182 LQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + P N +R + +RD D F ++ V + ++ + Sbjct: 201 EAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDIN 258 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 259 LFDFKGIKHGSEVVDGGDLAFDREEI 284 >gi|149911837|ref|ZP_01900439.1| hypothetical protein PE36_11367 [Moritella sp. PE36] gi|149805090|gb|EDM65114.1| hypothetical protein PE36_11367 [Moritella sp. PE36] Length = 309 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 18/228 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 ++V +SGG+DS +L L + + A+++D + +++ RY+ ++ Sbjct: 38 GDRVMVCLSGGADSYTMLDILLQLKAAAPIS-FDIIAVNLD-QKQPGFPEDILPRYLENL 95 Query: 77 CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +I +S+V K + +T + R ++ A + AT + H DD + Sbjct: 96 GIEYKIVQKDTYSIVKDKIPEGKT-TCSLCSRLRRGILYNAAVELRATKLALGHHADDIV 154 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ K + I D + RP CR DI+++ + P Sbjct: 155 ETLFLNMFHGAKMK----TMPPKLISDDKRNIVIRPLAYCREADIKAYSAFKAFPII--P 208 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 N + +R V++ + D F +R V + +A L Sbjct: 209 CNLCGSQENLQRQAVKKMLAQWDETNPGRVNNCFNSIRNIVPSHLADL 256 >gi|113970353|ref|YP_734146.1| C32 tRNA thiolase [Shewanella sp. MR-4] gi|114047455|ref|YP_738005.1| C32 tRNA thiolase [Shewanella sp. MR-7] gi|117920561|ref|YP_869753.1| C32 tRNA thiolase [Shewanella sp. ANA-3] gi|113885037|gb|ABI39089.1| PP-loop domain protein [Shewanella sp. MR-4] gi|113888897|gb|ABI42948.1| PP-loop domain protein [Shewanella sp. MR-7] gi|117612893|gb|ABK48347.1| PP-loop domain protein [Shewanella sp. ANA-3] Length = 322 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 22/195 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V L I + Sbjct: 56 LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPG---FPEHVLPAYLDSLNIPY 110 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 111 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETMFL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 G + M +L D + RP CR +D+ + + P N Sbjct: 171 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNLC 223 Query: 197 DRFERVRVRRFVRDI 211 + R+ V+D+ Sbjct: 224 GS-QENLKRQAVKDM 237 >gi|172061930|ref|YP_001809582.1| C32 tRNA thiolase [Burkholderia ambifaria MC40-6] gi|205830561|sp|B1YP61|TTCA_BURA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|171994447|gb|ACB65366.1| PP-loop domain protein [Burkholderia ambifaria MC40-6] Length = 340 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%) Query: 1 MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 +F + V + + ++V +SGG DS +L L + +R+ A++ Sbjct: 45 LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 103 Query: 58 VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109 +D + +V + +++ + + + + + R + Sbjct: 104 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 159 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A + AT I H DD L+T+ + KGM D D + RP Sbjct: 160 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 215 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D+ F R P N +R ++ +RD D F L Sbjct: 216 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 273 Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262 V + + + A Q + D Sbjct: 274 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 309 >gi|317122881|ref|YP_004102884.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter marianensis DSM 12885] gi|315592861|gb|ADU52157.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter marianensis DSM 12885] Length = 304 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 24/189 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ILVAVSGG DS+ + L + + + +D + E +K V Sbjct: 42 RMFTHDDRILVAVSGGKDSLAIWDVLLRL-------GYEAHGLYIDLGIGEYSKRSTEKV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------------RYALISEHAKTINATL 121 VVS + + G AR+A RY L + A + Sbjct: 95 RRFAEERGAVLRVVSVE-EEYGLGTTELARKAGRPACSACGLNKRY-LFNREALAGGYDV 152 Query: 122 IMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I+T H DD+ T+ + + + + +P R +I S+ Sbjct: 153 IVTGHNLDDEAATLLGNVLHWNTGYLARQAPVLEASAP--NLVKKVKPLYRLTEREIASY 210 Query: 181 LLQRNISWC 189 + R I + Sbjct: 211 AVLRGIDYI 219 >gi|289677052|ref|ZP_06497942.1| hypothetical protein PsyrpsF_27458 [Pseudomonas syringae pv. syringae FF5] Length = 274 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERNTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|300705432|ref|YP_003747035.1| ATP pyrophosphatase [Ralstonia solanacearum CFBP2957] gi|299073096|emb|CBJ44453.1| putative ATP pyrophosphatase [Ralstonia solanacearum CFBP2957] Length = 312 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 22/247 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +LV +SGG DS +L L ++ R+ K A+++D + ++V + ++ Sbjct: 34 VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +V + R +I AK + A I H DD + T Sbjct: 90 VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193 ++ G + M + D I RP C ++I S+ P Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIASYARAMEFPII--PC 202 Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N + +R +V+ + + + A F L+ V + +A + + Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFAALQNVVPSHLADTGLFDFSGLATGLA 262 Query: 251 AISQDIL 257 I ++ L Sbjct: 263 RIGEEAL 269 >gi|169794994|ref|YP_001712787.1| hypothetical protein ABAYE0832 [Acinetobacter baumannii AYE] gi|184159220|ref|YP_001847559.1| C32 tRNA thiolase [Acinetobacter baumannii ACICU] gi|213158341|ref|YP_002320392.1| PP-loop domain protein [Acinetobacter baumannii AB0057] gi|215482544|ref|YP_002324734.1| PP-loop family protein [Acinetobacter baumannii AB307-0294] gi|239503410|ref|ZP_04662720.1| PP-loop family protein [Acinetobacter baumannii AB900] gi|301346028|ref|ZP_07226769.1| PP-loop family protein [Acinetobacter baumannii AB056] gi|301511850|ref|ZP_07237087.1| PP-loop family protein [Acinetobacter baumannii AB058] gi|301594317|ref|ZP_07239325.1| PP-loop family protein [Acinetobacter baumannii AB059] gi|332855914|ref|ZP_08436088.1| PP-loop family protein [Acinetobacter baumannii 6013150] gi|332867124|ref|ZP_08437403.1| PP-loop family protein [Acinetobacter baumannii 6013113] gi|332876184|ref|ZP_08443963.1| PP-loop family protein [Acinetobacter baumannii 6014059] gi|205830360|sp|B2HXA8|TTCA_ACIBC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830364|sp|B0VDQ2|TTCA_ACIBY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789862|sp|B7GY44|TTCA_ACIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789863|sp|B7I610|TTCA_ACIB5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|169147921|emb|CAM85784.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|183210814|gb|ACC58212.1| predicted ATPase of the PP-loop superfamily [Acinetobacter baumannii ACICU] gi|213057501|gb|ACJ42403.1| PP-loop domain protein [Acinetobacter baumannii AB0057] gi|213986850|gb|ACJ57149.1| PP-loop family protein [Acinetobacter baumannii AB307-0294] gi|322509134|gb|ADX04588.1| ATPase [Acinetobacter baumannii 1656-2] gi|323519162|gb|ADX93543.1| C32 tRNA thiolase [Acinetobacter baumannii TCDC-AB0715] gi|332727233|gb|EGJ58682.1| PP-loop family protein [Acinetobacter baumannii 6013150] gi|332734197|gb|EGJ65327.1| PP-loop family protein [Acinetobacter baumannii 6013113] gi|332735618|gb|EGJ66666.1| PP-loop family protein [Acinetobacter baumannii 6014059] Length = 301 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 25/263 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 ++V I + ++ A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235 + R P N + +R + +R+ D F L+ + +A Sbjct: 207 YAELRKFPII--PCNLCGSQENLQRAMINEMLREWDKQYPKRLHSIFGALQNVSPSQLAD 264 Query: 236 -MLIPKYLTVHMRSIIAISQDIL 257 L + R + + L Sbjct: 265 RDLFDFEVLDSQRELDFKDPEEL 287 >gi|116622294|ref|YP_824450.1| PP-loop domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116225456|gb|ABJ84165.1| PP-loop domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 260 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 20/228 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRE 64 E++ F + + + VA+SGG DS +L AL +L R+ + +V+ LR Sbjct: 13 EAIHRF-KMIRDGDRVAVALSGGKDSATMLEALL-LLQKRAPIDFSVVSFTVEQGKFLRP 70 Query: 65 TAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + V + + I + + +P G R + E A+ + Sbjct: 71 -----IEPVGEYLKQRGIPWTYFRDDPSMRLLEEQPDHG-CDLCSRYRRRAVYEIARDLG 124 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 +I HT DD E R+ G S T + + + RP + Sbjct: 125 VNVIAFGHTADDFCE----ALLRNTMFTGKLSSLPPVTWSRNRDYRLIRPLCFVTEDITT 180 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 ++ I + R +R ++ +LK + Sbjct: 181 AYAASMGIPVIPCGCSQRTGTVRRALRDLFAGLEQEHPHLKENMLSAM 228 >gi|89899625|ref|YP_522096.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodoferax ferrireducens T118] gi|122479910|sp|Q220I8|TTCA_RHOFD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|89344362|gb|ABD68565.1| PP-loop [Rhodoferax ferrireducens T118] Length = 338 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 17/179 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS GLL L + R+ + A+++D ++ + + + Sbjct: 78 GDRVMVCVSGGKDSYGLLDILLKMQ-QRAPINFEIVAVNLD---QKQPGFPAHILPEYLA 133 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L I + + K + + R ++ A + T I H DD Sbjct: 134 KLGIEFHIETQDTYSIVKKVIPEGKTMCSLCSRLRRGILYRVADELKITKIALGHHRDDM 193 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L+T ++ G L GM ++ D I RP +D+ + R Sbjct: 194 LQTFFLNMF-----FGGKLKGMPPKLVSDDGGHIVIRPLANVAEKDLTRWAAHRQFPII 247 >gi|309701645|emb|CBJ00952.1| conserved hypothetical protein [Escherichia coli ETEC H10407] Length = 277 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + +V + Sbjct: 5 GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG---FPEHVLPEYL 59 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 60 EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI+ F + Sbjct: 120 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 174 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + + Sbjct: 175 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITH 233 Query: 248 SIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 234 GSEVVNGGDLAFDREEI 250 >gi|299769035|ref|YP_003731061.1| PP-loop family protein [Acinetobacter sp. DR1] gi|298699123|gb|ADI89688.1| PP-loop family protein [Acinetobacter sp. DR1] Length = 301 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL + + I F ++V+ + Sbjct: 37 AIRDF-NMIEEGDKVMVCVSGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD L T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + R P N + +R + +RD D K+ + + N Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAMLNEMLRDWDKQYP----KRLHSIFGALQNVSPS 260 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + ++ + + L L Sbjct: 261 QLADRELFDFEALDSQRELDFKDPEELKNRL 291 >gi|283832996|ref|ZP_06352737.1| PP-loop family protein [Citrobacter youngae ATCC 29220] gi|291071608|gb|EFE09717.1| PP-loop family protein [Citrobacter youngae ATCC 29220] Length = 311 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K+ P+ + R ++ A + AT I H DD Sbjct: 94 QQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSEAKGFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + ++ + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDINLFDFKGIKH 267 Query: 248 SIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 268 GSEVVNGGDLAFDREEI 284 >gi|262369470|ref|ZP_06062798.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter johnsonii SH046] gi|262315538|gb|EEY96577.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter johnsonii SH046] Length = 307 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 21/255 (8%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + + ++V +SGG DS LL + + I F ++V+ + Sbjct: 37 AIRDF-KMIEEGDKVMVCISGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 ++V I + ++ A R + A+ I A Sbjct: 93 PEDVLP--RYLEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD L T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + R P N + R + D+ K+ + + N + Sbjct: 207 YAEMRQFPII--PCNLCGS-QENLQRAMLNDMLREWDKAHPKRLHSIFGALQNVSPSQLA 263 Query: 240 KYLTVHMRSIIAISQ 254 ++ + + Sbjct: 264 DRELFDFEALDSERE 278 >gi|302390349|ref|YP_003826170.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646] gi|302200977|gb|ADL08547.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646] Length = 316 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E VR +R +LV VSGG DSM L L +A+ ++ + Sbjct: 32 EQVRRNIRREKMFGPKDRVLVVVSGGKDSMALWHILLK-------EGYDVTAMYINLGIG 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISE 112 + ++ V V + + + + ARE R + L ++ Sbjct: 85 DYSERSQEVVERFSEEHEAPLIVKNIE-KEYGLNIPWLAREIRRSTCSLCGTIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A ++ T H DD+ T+ + E + + + +P Sbjct: 144 VALDEGFDVVATGHNLDDEAATLLGNVL-SWQEGYLARQSPVLPSTHPKLVKKVKPLFTL 202 Query: 173 RREDIRSFLLQRNISWCEDPS 193 + +++L IS+ + Sbjct: 203 TERENLAYVLFNGISFIHEEC 223 >gi|229828920|ref|ZP_04454989.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM 14600] gi|229792083|gb|EEP28197.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM 14600] Length = 484 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 48/237 (20%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----------K 67 I V +SGG DSM + +L H + + + Sbjct: 228 GDKIAVCISGGKDSMIMAKLFQELLR---------------HGKQNFSLEFLLMNPGYNE 272 Query: 68 DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122 + R ++D L I V + R + A+ + I Sbjct: 273 ENYRRITDNARLLGIPIRVFESSIYDIVAGEEIENPCYLCARMRRGHLYAKARELGCNKI 332 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSF 180 H FDD +ET+ M G + M + + + RP R DI + Sbjct: 333 ALGHHFDDVIETILMGML-----YGGQIQTMMPKVHSTNFQGMELIRPLYLVREADIIHW 387 Query: 181 LLQRNISWC------EDPSN----TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + D + + +R ++ +R++ Y++ F+ + Sbjct: 388 ARYNDLRFILCACRLTDSCSVVGGAETGSKRAEIKALIRELKKTNPYVEKNIFRSVE 444 >gi|85859574|ref|YP_461776.1| tRNA s2C32 biosynthesis protein [Syntrophus aciditrophicus SB] gi|85722665|gb|ABC77608.1| tRNA s2C32 biosynthesis protein [Syntrophus aciditrophicus SB] Length = 265 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 71/225 (31%), Gaps = 23/225 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS-----FGKIKFSAISVDHCLRETAKD 68 R + H+LV VSGG ++L + + + + +D A Sbjct: 25 RMIEEGDHVLVGVSGG-------ADSLALLDLLNTPMIFVPEFSLTVVHIDPGFDPDAAG 77 Query: 69 EVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 + + + + + R I E A I I Sbjct: 78 -YDRLESYMKAGGYNYVMEKTDIGPLSHSDYNKKNPCFLCSRLRRKRIFEIAGEIGCNKI 136 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 AH DD +ET+ + + M D ++ ++ I RP R E I+ + Sbjct: 137 ALAHHQDDMIETLLINMFYGREIS----TMMPDQPIFGGSMHIIRPLTYIREELIKKYSR 192 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +R E T+ R ++ + ++ ++ F+ + Sbjct: 193 EREFPIVESSCPTNPVSRRRYIKNLLDSLEKENKDIRANIFKAMS 237 >gi|188590997|ref|YP_001795597.1| c32 tRNA thiolase [Cupriavidus taiwanensis LMG 19424] gi|205830576|sp|B2AGH6|TTCA_CUPTR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|170937891|emb|CAP62875.1| putative ATP pyrophosphatase [Cupriavidus taiwanensis LMG 19424] Length = 308 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 24/277 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80 +LV +SGG DS +L L ++ R+ K K A+++D + ++ + + Sbjct: 34 VLVCMSGGKDSYTMLSVLMALQK-RAPIKFKLIAMNLD-QKQPG---FPEHILPEYLKSV 88 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + R +I AK + A I H DD + Sbjct: 89 GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192 T ++ G + M + D I RP C +DI S+ P Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGAHIVIRPLAYCSEKDIASYARAMEFPII--P 201 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 N + +R +V +++ + F LR V + +A T + Sbjct: 202 CNLCGSQENLQRKKVSEMLQEWERQNPGRIDNIFSALRNVVPSHLADTELFPFTGLATGL 261 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + L ++T L + ++ ++ + Sbjct: 262 AKVDEASLFGETTFQQQPLTFAGSLDENRMEFVRFER 298 >gi|330974376|gb|EGH74442.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 274 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID + V Sbjct: 239 LQNVQPSQLADRNLFDFTNLRIDEAAASRFVNV 271 >gi|205830644|sp|Q0HIM8|TTCA_SHESM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830645|sp|Q0HVA7|TTCA_SHESR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830649|sp|A0KX28|TTCA_SHESA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 310 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V L I + Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPG---FPEHVLPAYLDSLNIPY 98 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 99 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETMFL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + M +L D + RP CR +D+ + + P N Sbjct: 159 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNL 210 >gi|257463784|ref|ZP_05628172.1| PP family ATPase [Fusobacterium sp. D12] gi|317061329|ref|ZP_07925814.1| PP family ATPase [Fusobacterium sp. D12] gi|313687005|gb|EFS23840.1| PP family ATPase [Fusobacterium sp. D12] Length = 262 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 16/190 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I++V+ F LV I V VSGG DS+ L + DRS + IS++ Sbjct: 22 KFIKAVQDF--ELVENGDKIAVGVSGGKDSLLLCKLFQELEKDRS-KHFEVHFISMNPGF 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117 A D ++ ++ L I + W+ + Q + R ++ + + + Sbjct: 79 --EAMDMDKFQQNL-KELGINCELFDANVWQVAFEQDPESPCFLCAKMRRGVLYKKVEEL 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + K + + L I RP + + +DI Sbjct: 136 GCNKLALGHHFDDVIETTLINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191 Query: 178 RSFLLQRNIS 187 +SF+ I Sbjct: 192 KSFMKTNEIE 201 >gi|153000684|ref|YP_001366365.1| C32 tRNA thiolase [Shewanella baltica OS185] gi|217973395|ref|YP_002358146.1| C32 tRNA thiolase [Shewanella baltica OS223] gi|151365302|gb|ABS08302.1| PP-loop domain protein [Shewanella baltica OS185] gi|217498530|gb|ACK46723.1| PP-loop domain protein [Shewanella baltica OS223] Length = 322 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 56 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 110 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195 G + M +L D + RP CR +D+ + R P N Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223 Query: 196 --DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244 >gi|67588028|ref|XP_665313.1| cancer-associated gene protein like (41.3 kD) (4A872) [Cryptosporidium hominis TU502] gi|54655939|gb|EAL35084.1| cancer-associated gene protein like (41.3 kD) (4A872) [Cryptosporidium hominis] Length = 306 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 34/263 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + V +SGG DS LL L+ + + R I+ I+VD ++ D + V Sbjct: 4 RMFKRGNRVGVCISGGKDSSVLLNVLYEL-NKRKDYGIELELIAVDEGIKGYRDDSLEVV 62 Query: 74 SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122 +++S+K+ ++ R + + +NA +I Sbjct: 63 KYQQEYYNCPLTILSFKDMFNTTMDEIQSKSSKSNSCTYCGVFRRKALDIGSYKVNADVI 122 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM----------------GLSGMCDTILYDLNLW-I 165 T H+ DD ET+ + R + + LN+ Sbjct: 123 CTGHSCDDTCETLLLNILRGDFNRLRRCINPITNNEITKTKDQMQNHDSQNEAFLNIKPR 182 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFE---RVRVRRFVRDIDLHALYLKMK 221 +P + C ++I + N+ + D + R +R+ ++ D + + Sbjct: 183 VKPLMYCYEKEIVLYAHYLNLKYFSTECTYSVDAYRGVSREFIRK-IQSFDYKYSFNMIL 241 Query: 222 KFQDLRVKVNNAVAMLIPKYLTV 244 Q+L ++ +N+ I + T+ Sbjct: 242 AAQELNLEQSNSSPNYIARKCTI 264 >gi|304408712|ref|ZP_07390333.1| PP-loop domain protein [Shewanella baltica OS183] gi|307305541|ref|ZP_07585289.1| PP-loop domain protein [Shewanella baltica BA175] gi|304352533|gb|EFM16930.1| PP-loop domain protein [Shewanella baltica OS183] gi|306911844|gb|EFN42269.1| PP-loop domain protein [Shewanella baltica BA175] Length = 322 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 56 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 110 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195 G + M +L D + RP CR +D+ + R P N Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223 Query: 196 --DDRFERVRVRRFVRDIDLH 214 + +R V+ + D Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244 >gi|50085874|ref|YP_047384.1| C32 tRNA thiolase [Acinetobacter sp. ADP1] gi|81392465|sp|Q6F8Q3|TTCA_ACIAD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|49531850|emb|CAG69562.1| conserved hypothetical protein [Acinetobacter sp. ADP1] Length = 301 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 20/196 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT 195 + R P N Sbjct: 207 YADLRKFPII--PCNL 220 >gi|254468643|ref|ZP_05082049.1| hypothetical protein KB13_868 [beta proteobacterium KB13] gi|207087453|gb|EDZ64736.1| hypothetical protein KB13_868 [beta proteobacterium KB13] Length = 277 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 20/215 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V +SGG DS LL L ++ R+ A+++D + + V D + Sbjct: 42 VMVCLSGGKDSYTLLSLLSAL-RKRAPIDFSIVAMNLD-QKQPGFPENVLP--DYLNSHG 97 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + + +++ + R +I A+ I A I H +D +ET Sbjct: 98 VDYKIITEDTYSIVKEKIPEGKTTCSLCSRLRRGIIYRVAREIGANKIALGHHKNDIVET 157 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 +M K S + D + RP +DI SF N P N Sbjct: 158 FFMNMFFGSKLK----SMPPKLLSDDQTNIVIRPLAYIEEKDIISFSKTMNYPII--PCN 211 Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + +R +++ + + FQ L Sbjct: 212 LCGSQENLQRNKIKSMLNSWEKEQPGRINNIFQSL 246 >gi|66046934|ref|YP_236775.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae B728a] gi|75501097|sp|Q4ZQ35|TTCA_PSEU2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|63257641|gb|AAY38737.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae B728a] Length = 274 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFTNLRIDETAASRFVNV 271 >gi|153955725|ref|YP_001396490.1| hypothetical protein CKL_3111 [Clostridium kluyveri DSM 555] gi|219856094|ref|YP_002473216.1| hypothetical protein CKR_2751 [Clostridium kluyveri NBRC 12016] gi|146348583|gb|EDK35119.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219569818|dbj|BAH07802.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 299 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 17/192 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHC 61 + ++ F +LV + VAVSGG DSM + + I+F A+ D Sbjct: 39 KFVRAISEF--NLVEEGDRVGVAVSGGKDSMLMAKLFQELKRHWKVNFHIEFIAM--DPG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKT 116 E+ + + + C+ L I V + ++ + + R + A+ Sbjct: 95 YHESNR---NLLIENCNYLNIPLHVFESHIFNVVDNIAKDYPCYICAKMRRGALYSKAQQ 151 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + + H F+D +ET + + K M L + N+ + RP + Sbjct: 152 LGCSKLALGHHFNDVIETTLLNLFYGGSFKTM-LPKLKSKNF--KNIELIRPLYFVEESN 208 Query: 177 IRSFLLQRNISW 188 +++F+ IS Sbjct: 209 VKAFMKNAGISP 220 >gi|332141492|ref|YP_004427230.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas macleodii str. 'Deep ecotype'] gi|327551514|gb|AEA98232.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas macleodii str. 'Deep ecotype'] Length = 317 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 ++V +SGG DS +L L + + I F ++V+ L + +V + Sbjct: 49 DKVMVCLSGGKDSYTMLDILLFL---KKIAPIHFDIVAVN--LDQKQPGFPEHVLPEYLE 103 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 R+ + + +V K+ P+ + R ++ AK + AT I H DD Sbjct: 104 RIGVDYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190 LET ++ L M ++ D I RP C +DI + Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIVKYSQAVEFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|229825237|ref|ZP_04451306.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC 49176] gi|229790609|gb|EEP26723.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC 49176] Length = 280 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 26/196 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62 + +++V+ + + I V +SGG DS L + + R F + + I +D Sbjct: 25 NFVKAVKEY-ELIKEGDRIAVCISGGKDSFLLAKLMQELKRHRKF-EYELKFIVMDPGYN 82 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E + + + + L I + + + R + AK + Sbjct: 83 SENS----KLIEENAKLLEIPVEIFHSEIFDVVVDIEKSPCYLCARMRRGHLYSKAKELG 138 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRC 172 I H FDD +ETV M GM +G +T++ L + + RP Sbjct: 139 CNKIALGHHFDDAIETVLM---------GMFYAGKYETMMPKLHSQNFEGMELIRPLYMV 189 Query: 173 RREDIRSFLLQRNISW 188 R E IR+++ N+ + Sbjct: 190 REEYIRAWVKYNNLRF 205 >gi|188533797|ref|YP_001907594.1| C32 tRNA thiolase [Erwinia tasmaniensis Et1/99] gi|254790128|sp|B2VKN8|TTCA_ERWT9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|188028839|emb|CAO96701.1| Predicted ATPase of the PP-loop superfamily [Erwinia tasmaniensis Et1/99] Length = 309 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 96/294 (32%), Gaps = 23/294 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D ++ Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD---QKQP 82 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 + + + + + +V + R ++ A + Sbjct: 83 GFPAHILPEYLEQQGVEYKIVDEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIER 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + R P N +R + +RD D F ++ V + +A Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFTAMQNVVPSHLAD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 I L D L L+ SA + P + ++ Sbjct: 257 ADLFDFKQIRHGSEVIDGGDLAFDRETL--PLQPSAWQPEEDEATPARLDVVQI 308 >gi|22125890|ref|NP_669313.1| C32 tRNA thiolase [Yersinia pestis KIM 10] gi|45441914|ref|NP_993453.1| C32 tRNA thiolase [Yersinia pestis biovar Microtus str. 91001] gi|108807679|ref|YP_651595.1| C32 tRNA thiolase [Yersinia pestis Antiqua] gi|108811956|ref|YP_647723.1| C32 tRNA thiolase [Yersinia pestis Nepal516] gi|145598114|ref|YP_001162190.1| C32 tRNA thiolase [Yersinia pestis Pestoides F] gi|149365753|ref|ZP_01887788.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125] gi|153947235|ref|YP_001400777.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 31758] gi|162419399|ref|YP_001606655.1| C32 tRNA thiolase [Yersinia pestis Angola] gi|165926443|ref|ZP_02222275.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938602|ref|ZP_02227158.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166010640|ref|ZP_02231538.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210960|ref|ZP_02236995.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400851|ref|ZP_02306357.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422098|ref|ZP_02313851.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424807|ref|ZP_02316560.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467094|ref|ZP_02331798.1| PP-loop family protein [Yersinia pestis FV-1] gi|170024151|ref|YP_001720656.1| C32 tRNA thiolase [Yersinia pseudotuberculosis YPIII] gi|218929427|ref|YP_002347302.1| C32 tRNA thiolase [Yersinia pestis CO92] gi|229837856|ref|ZP_04458015.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895014|ref|ZP_04510192.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Pestoides A] gi|229898417|ref|ZP_04513564.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. India 195] gi|229902264|ref|ZP_04517384.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Nepal516] gi|270490553|ref|ZP_06207627.1| PP-loop family protein [Yersinia pestis KIM D27] gi|294503652|ref|YP_003567714.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003] gi|123072798|sp|Q1C7C2|TTCA_YERPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123073391|sp|Q1CIQ7|TTCA_YERPN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123777122|sp|Q7CIP8|TTCA_YERPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830672|sp|A7FHP9|TTCA_YERP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830674|sp|A9R8Q5|TTCA_YERPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830675|sp|A4TIV5|TTCA_YERPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830676|sp|B1JJU2|TTCA_YERPY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|21958825|gb|AAM85564.1|AE013802_9 hypothetical protein y1998 [Yersinia pestis KIM 10] gi|45436777|gb|AAS62330.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Yersinia pestis biovar Microtus str. 91001] gi|108775604|gb|ABG18123.1| hypothetical protein YPN_1794 [Yersinia pestis Nepal516] gi|108779592|gb|ABG13650.1| hypothetical protein YPA_1684 [Yersinia pestis Antiqua] gi|115348038|emb|CAL20963.1| conserved hypothetical protein [Yersinia pestis CO92] gi|145209810|gb|ABP39217.1| hypothetical protein YPDSF_0811 [Yersinia pestis Pestoides F] gi|149292166|gb|EDM42240.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125] gi|152958730|gb|ABS46191.1| PP-loop family protein [Yersinia pseudotuberculosis IP 31758] gi|162352214|gb|ABX86162.1| PP-loop family protein [Yersinia pestis Angola] gi|165913476|gb|EDR32097.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165921664|gb|EDR38861.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165990342|gb|EDR42643.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166208140|gb|EDR52620.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958910|gb|EDR55931.1| PP-loop family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049704|gb|EDR61112.1| PP-loop family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055994|gb|EDR65772.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750685|gb|ACA68203.1| PP-loop domain protein [Yersinia pseudotuberculosis YPIII] gi|229680599|gb|EEO76695.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Nepal516] gi|229688707|gb|EEO80776.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. India 195] gi|229694222|gb|EEO84269.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702109|gb|EEO90130.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis Pestoides A] gi|262362230|gb|ACY58951.1| hypothetical protein YPD4_2044 [Yersinia pestis D106004] gi|262365563|gb|ACY62120.1| hypothetical protein YPD8_1435 [Yersinia pestis D182038] gi|270339057|gb|EFA49834.1| PP-loop family protein [Yersinia pestis KIM D27] gi|294354111|gb|ADE64452.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003] gi|320014992|gb|ADV98563.1| putative magnesium chelatase family protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 313 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L S+ A+++D + +++ Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFSLIAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268 Query: 249 IIAISQDILNIDSTLL 264 I L D L Sbjct: 269 SDIIDGGDLAFDREAL 284 >gi|302188993|ref|ZP_07265666.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae 642] Length = 274 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|295115158|emb|CBL36005.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SM4/1] Length = 131 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R +++ AK + I AH DD ++T+ + +G S T L ++L+ Sbjct: 1 MRKGALNQAAKNLGCNKIAYAHHRDDLIDTMLLSLI----YEGRFHSFSPKTYLDRMDLF 56 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224 + RPFL DI F + ++ C++P D + +R V++ ++ I++ A +K + F Sbjct: 57 VIRPFLYIPEADIIGFKNRYSLPVCKNPCPVDGKTKREYVKQLIKTINMEASGVKDRLFH 116 Query: 225 DL 226 + Sbjct: 117 AI 118 >gi|298530265|ref|ZP_07017667.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509639|gb|EFI33543.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 299 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 26/185 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76 IL+A+SGG DS+ L LH + + + I + + + R +V Sbjct: 46 KEDRILIALSGGKDSLALARELHLLGYNTAGLYIDLAI--------PGSSETARDHVERF 97 Query: 77 CSRLRIAHSV------------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 C L I+ V V K ++P + R RY + A +++ T Sbjct: 98 CRDLGISLHVLEMEKEGMPIPEVRKKFNRPVCSVC--GRIKRY-YFNRFALDNGFSVLAT 154 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD+ ++ R + +G G D + +P R + ++ Sbjct: 155 GHNLDDEAARLFSNVMR-WDVSYLGSQG-PDLPAEQGFVRKVKPLYRLSEFETANYSFLA 212 Query: 185 NISWC 189 I +C Sbjct: 213 GIDYC 217 >gi|332993129|gb|AEF03184.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas sp. SN2] Length = 313 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 ++V +SGG DS +L L + + I F I+V+ L + +V + Sbjct: 49 DKVMVCLSGGKDSYAMLDILMFL---KRIAPIHFDIIAVN--LDQKQPGFPEHVLPEYLE 103 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ AK + AT I H DD Sbjct: 104 SVGVEYKIVEEDTYSIVMDKVPEGKTTCSLCSRLRRGILYSTAKKLGATKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190 LET ++ L M ++ D I RP C +DI+ + Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIQRYSDAVEFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|163854634|ref|YP_001628932.1| C32 tRNA thiolase [Bordetella petrii DSM 12804] gi|205830557|sp|A9HY25|TTCA_BORPD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|163258362|emb|CAP40661.1| conserved hypothetical protein [Bordetella petrii] Length = 324 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 20/223 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ F A+++D + EV + Sbjct: 46 AGDRVMVCLSGGKDSYALLDILLSLRKRAPFS-FDIVAVNLD-QKQPGFPPEVLP--NYL 101 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + + + + + R ++ A + AT I H DD Sbjct: 102 TSLGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVAGELGATKIALGHHRDD 161 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T ++ G + + D + RP D+ ++ + Sbjct: 162 ILATFFLNLFYG----GKAKAMPPKLVSDDGRHTVIRPLAYVPEHDLVAYAKFKQFPII- 216 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R +++ D F L V Sbjct: 217 -PCNLCGSQENLKRQEVSRMIQEWDRRHPGRSWNVFNALSRIV 258 >gi|329896676|ref|ZP_08271669.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC3088] gi|328921612|gb|EGG28988.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC3088] Length = 278 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 22/205 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L S+ + A+++D + +V Sbjct: 35 GDRVMVCLSGGKDSYTMLELLMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPQYL 89 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I + + V + R + A+ I A I H DD Sbjct: 90 DALGIEYYILERDTYSVVKRVIPEGKTTCGLCSRLRRGTLYGFAEEIGAQKIALGHHRDD 149 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ +G + + D I RP C+ DI F R Sbjct: 150 IVETLFLNMF----FQGSLKAMPPKLLSDDGKNVIIRPLAYCKESDIERFAQARAFPII- 204 Query: 191 DPSNT---DDRFERVRVRRFVRDID 212 P N D +RV+V+ + + Sbjct: 205 -PCNLCGSQDHLQRVQVKEMLAQWE 228 >gi|238782626|ref|ZP_04626657.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri ATCC 43970] gi|238716553|gb|EEQ08534.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri ATCC 43970] Length = 313 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L S+ A+++D + +++ Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKAITHD 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SEVVDGGDLAFDREEL 284 >gi|205830650|sp|A6WNB3|TTCA_SHEB8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 310 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 21/179 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + + A+++D + +V +L + + Sbjct: 44 LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 98 Query: 85 SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 99 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + M +L D + RP CR +D+ + R P N Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNL 210 >gi|292488333|ref|YP_003531215.1| hypothetical protein EAMY_1857 [Erwinia amylovora CFBP1430] gi|292899532|ref|YP_003538901.1| hypothetical protein EAM_1822 [Erwinia amylovora ATCC 49946] gi|291199380|emb|CBJ46497.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946] gi|291553762|emb|CBA20807.1| UPF0021 protein HI1371.1 [Erwinia amylovora CFBP1430] gi|312172472|emb|CBX80729.1| UPF0021 protein HI1371.1 [Erwinia amylovora ATCC BAA-2158] Length = 309 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D ++ Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 + + +L + + +V+ + R ++ A + Sbjct: 83 GFPAHILPEYLEKLGVQYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F R P N +R + +RD D F ++ V + +A Sbjct: 199 FAFARQYPII--PCNLCGSQPNLQRQAIGDMLRDWDKRYPGRIETMFTAMQNVVPSHLAD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 R + L D L Sbjct: 257 ADLFDFKHIRRGADVVDGGDLAFDRETL 284 >gi|206890224|ref|YP_002248861.1| ATPase, PP-loop superfamily [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742162|gb|ACI21219.1| ATPase, PP-loop superfamily [Thermodesulfovibrio yellowstonii DSM 11347] Length = 304 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 26/200 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 IE + F + IL+AVSGG DSM +L AL + + A+ +D + Sbjct: 42 ETIEKFKMFSK----KDSILIAVSGGKDSMSILKALKDM-------EYNIKALHIDVGIG 90 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEH 113 E +K +V + C + I+ + + + + A R +++ Sbjct: 91 EVSKKSKEFVQEFCEKEDISLKTIKLQEEIQLPLKELSKISKRPICAVCGMLRRYILN-- 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 + + I+T HT +D++ + + + + +P Sbjct: 149 -RESSGQTIVTGHTLNDEVAFILKNMI--FWNDELLARIYPVLHEKEGFSRKVKPLCLIT 205 Query: 174 REDIRSFLLQRNISWCEDPS 193 E+ R F +I + ++P Sbjct: 206 EEETRFFCETLSIKYIDEPC 225 >gi|259908376|ref|YP_002648732.1| C32 tRNA thiolase [Erwinia pyrifoliae Ep1/96] gi|224963998|emb|CAX55503.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Erwinia pyrifoliae Ep1/96] gi|283478316|emb|CAY74232.1| UPF0021 protein HI1371.1 [Erwinia pyrifoliae DSM 12163] Length = 310 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D ++ Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 + + +L + + +V+ + R ++ A + Sbjct: 83 GFPAHILPEYLEQLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + R P N +R + +RD D F ++ V + +A Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETLFTAMQNVVPSHLAD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 257 ANLFDFKHIRHGADVVDGGDLAFDRETL 284 >gi|148262788|ref|YP_001229494.1| C32 tRNA thiolase [Geobacter uraniireducens Rf4] gi|205830590|sp|A5GBX4|TTCA_GEOUR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|146396288|gb|ABQ24921.1| PP-loop domain protein [Geobacter uraniireducens Rf4] Length = 252 Score = 88.0 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 13/172 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75 I VAVSGG DS LL L ++ R+ + + AI++D R A ++ + Sbjct: 29 GDRIAVAVSGGKDSYTLLHILETL-RKRAPVRYEIMAINIDSGYPGFR--ADIIEEHLRE 85 Query: 76 ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 V + H + + +P + + + ++ A+ N + H DD + Sbjct: 86 HGFVAHMEKTDHYGIIKEKRRPDSSYCSICARLKRGVLYGLAQRYNCNKLALGHHMDDFI 145 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 ET+ + + K M S + D L + RP + EDI F Sbjct: 146 ETLLLNQFFVGSLKAMAPSMLADNGL----TTVIRPLVYVPEEDIIPFSRNN 193 >gi|330949806|gb|EGH50066.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae Cit 7] Length = 274 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|114320103|ref|YP_741786.1| PP-loop domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226497|gb|ABI56296.1| tRNA s(2)C-32 sulfurtransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 294 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 22/249 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++R + R + ++V +SGG DS LL L + R+ + + A+++D + Sbjct: 18 NAIRDY-RMIEEGDRVMVCLSGGKDSYALLDVLLRLQK-RAPVRFELVAVNLD-QKQPG- 73 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + + L + + ++ + R L+ A+ + Sbjct: 74 --FPEHVLPEYLASLGVPYRILEADTYSTVERVIPEGKTKCSLCSRLRRGLLYGAAEEMG 131 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 + I H DD LET ++ G L+ M + + + RP + Sbjct: 132 CSKIALGHHRDDILETFFLNLF-----YGGRLAAMPPKLRSNNGRHVVIRPLAYVPEPYL 186 Query: 178 RSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVA 235 + + + +R ++ +R+ F L+ V+ ++ Sbjct: 187 ERYAERMAFPIIPCTLCGSQPDLKRQMIKAMLREWGEIEPRRLANIFSALQNVQPSHLAD 246 Query: 236 MLIPKYLTV 244 + ++ + Sbjct: 247 KELYDFINL 255 >gi|169632661|ref|YP_001706397.1| hypothetical protein ABSDF0830 [Acinetobacter baumannii SDF] gi|260556474|ref|ZP_05828692.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter baumannii ATCC 19606] gi|205830459|sp|A3M828|TTCA_ACIBT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789864|sp|B0VT10|TTCA_ACIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|169151453|emb|CAP00197.1| conserved hypothetical protein [Acinetobacter baumannii] gi|193078129|gb|ABO13072.2| hypothetical protein A1S_2656 [Acinetobacter baumannii ATCC 17978] gi|260409733|gb|EEX03033.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter baumannii ATCC 19606] Length = 301 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 25/263 (9%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 ++V I + ++ A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235 + R P N + +R + +R+ D F L+ + +A Sbjct: 207 YAELRKFPII--PCNLCGSQENLQRAMINEMLREWDRQYPKRLHSIFGALQNVSPSQLAD 264 Query: 236 -MLIPKYLTVHMRSIIAISQDIL 257 L + R + + L Sbjct: 265 RDLFDFEVLDSQRELDFKDPEEL 287 >gi|295090663|emb|CBK76770.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Clostridium cf. saccharolyticum K10] Length = 309 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 10 RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FV++L +I V +SGG DSM L + +L + + +D Sbjct: 57 RPFVKALNEYDMIQEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 115 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + R + + + I +V R + +AK + Sbjct: 116 PENR---RMIEENARIMGIPITVFESDIFNVVVDVDQSPCYLCARMRRGYLYANAKKLGC 172 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H FDD +ET+ M M + ++ + + RP + DI++ Sbjct: 173 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADIQA 229 Query: 180 FLLQRNISW 188 + + + Sbjct: 230 WRDFNQLRF 238 >gi|237798956|ref|ZP_04587417.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021810|gb|EGI01867.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 274 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + I+F ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIRFEIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLD--------WERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSSLRIDETAASRFVNV 271 >gi|332285699|ref|YP_004417610.1| hypothetical protein PT7_2446 [Pusillimonas sp. T7-7] gi|330429652|gb|AEC20986.1| hypothetical protein PT7_2446 [Pusillimonas sp. T7-7] Length = 323 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 22/223 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ + R+ A+++D + +V D Sbjct: 53 GDKVMVCLSGGKDSYTMLDILLTLKA-RAPINFDIIAVNLD-QKQPG---FPEHVLPDYL 107 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + + + R ++ A + AT I H DD Sbjct: 108 RSIDVPFHIENQDTYSIVTRVIPEGKTTCSLCSRLRRGILYRVASELGATKIALGHHRDD 167 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T ++ K M M D D + RP +DI ++ + Sbjct: 168 ILGTFFLNLFYGGRMKAMPPKLMSD----DGKHIVIRPLAYIPEKDIIAYAEMKQFPII- 222 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 P N + +R V R + + D H F L V Sbjct: 223 -PCNLCGSQENLKRKEVSRMIAEWDRHFPGRSWNVFGALSRVV 264 >gi|291460401|ref|ZP_06599791.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291416968|gb|EFE90687.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 387 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 11/175 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM + V F + + +D E + R + + + Sbjct: 142 GDRICVCISGGKDSMLMAKLFQEVKRHNKFP-FELVFLCMDPGYNEANR---RIIEENAA 197 Query: 79 RLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + R + A+ + I H +DD +ET Sbjct: 198 LLGIPLRFFQTEIFDAVFHIEKSPCYVCARMRRGWLYRRARELGCNKIALGHHYDDVIET 257 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 V M Y+ + + + ++ + + RP R EDI + + ++++ Sbjct: 258 VLMGML--YSGQFQAMMPKLRSTNFE-GMELIRPLYLIREEDILRWRDENHLNFI 309 >gi|283785362|ref|YP_003365227.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter rodentium ICC168] gi|282948816|emb|CBG88417.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter rodentium ICC168] Length = 311 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ I+FS ++V+ L + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQS---APIRFSLVAVN--LDQKQPGFPEHILPEYL 93 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V + R ++ A + AT I H DD Sbjct: 94 EQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKAFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + ++ + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDINLFDFKGIRH 267 Query: 248 SIIAISQDILNIDSTLL 264 + L D + Sbjct: 268 GAEVVDGGDLAFDRQEI 284 >gi|224550205|gb|ACN54187.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia giraulti] Length = 150 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219 I RP L R +I + + W ED SN D ++ R R ++ D + L Sbjct: 1 IFRPLLNFSRSEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60 Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278 + + + + + + VH I I + + + LL S + Sbjct: 61 ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120 Query: 279 ISLPGYRSMERVMLFLKS 296 P +RS+ + + Sbjct: 121 HYKPRHRSLIAIFNKISQ 138 >gi|166714054|ref|ZP_02245261.1| hypothetical protein Xoryp_22105 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 305 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 22/245 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS +L L + + F+ ++V+ L + D +V Sbjct: 48 IAPGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + + R + +A+T T I H Sbjct: 103 AYLDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N + R+ V + H + + + + + + + + Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQHWDHEQPGRVEQIARALGDVRPEQLADRTLFDF 274 Query: 247 RSIIA 251 ++ Sbjct: 275 LALGR 279 >gi|320353077|ref|YP_004194416.1| PP-loop domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320121579|gb|ADW17125.1| PP-loop domain protein [Desulfobulbus propionicus DSM 2032] Length = 253 Score = 88.0 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 72/223 (32%), Gaps = 19/223 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRY 72 L +LVAVSGG DS+ L+ L ++ + VD E Sbjct: 21 LADGDRVLVAVSGGMDSLV-LVWLLLHWRKKAPIDYALEVVHVDMEPEG--EAPGAAAIQ 77 Query: 73 VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---------EARYALISEHAKTINATLIM 123 +D+ +R + +V +G AR +R + EHA+ T I Sbjct: 78 TADLVARFGVQVHIVPALWRPVLSGEGEDARGQDLCFQCARSRRTQLFEHARQTGCTKIA 137 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD +ET + G + L+ L + RP + +I + + Sbjct: 138 FGHHRDDIVETFLLNLT----CAGNISTMSPRQELFAGRLSLIRPLAYLDKSEIAAIGGE 193 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + +R R + + I K F L Sbjct: 194 LGLEPVRSTCPLSERTRRGEMHQLAEHIYRQIPGAKEHIFAAL 236 >gi|317497510|ref|ZP_07955829.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895193|gb|EFV17356.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 404 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +++++ + + I + +SGG DSM + + F + +D Sbjct: 145 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 202 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 E + + + + L I +V + + R + AK + Sbjct: 203 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 259 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H +DD +ET+ M + M + ++ + + RP R +DI Sbjct: 260 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 316 Query: 178 RSFLLQRNISWC 189 + + + + Sbjct: 317 KHWRDYNGLHFI 328 >gi|291558374|emb|CBL37174.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SSC/2] Length = 404 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +++++ + + I + +SGG DSM + + F + +D Sbjct: 145 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 202 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 E + + + + L I +V + + R + AK + Sbjct: 203 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 259 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H +DD +ET+ M + M + ++ + + RP R +DI Sbjct: 260 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 316 Query: 178 RSFLLQRNISWC 189 + + + + Sbjct: 317 KHWRDYNGLHFI 328 >gi|296109212|ref|YP_003616161.1| PP-loop domain protein [Methanocaldococcus infernus ME] gi|295434026|gb|ADG13197.1| PP-loop domain protein [Methanocaldococcus infernus ME] Length = 296 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 33/222 (14%) Query: 7 ESVRFFVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 E V V+ +V P I + +SGG DS+ + L+ + S+ ++K I + Sbjct: 27 EEVERRVKKVVKPYMKRGVKINIGISGGKDSLVMAHILNKL----SYPEVKLRCIFIHEG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALI 110 + +R V C + + V+ K + + R L+ Sbjct: 83 IEGFRDKALRVVKKFCEKEGLELKVIYLKEEFNYTLDEMITLLKEYKPCSICAVFRRYLL 142 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 ++++K ++ + H DD +T+ M + + + + +P Sbjct: 143 NKYSK--DSDYLAIGHNLDDHAQTILMNYIEGNIKNIIYFGKDAEGFVKR-----IKPLK 195 Query: 171 RCRREDIRSFLLQRNISWCEDPSN-TDDRFERVRVRRFVRDI 211 E+++ + + + ++P + + R +++I Sbjct: 196 YVPEEEVKFYADLVKLEYQKEPCPYSSLSY-----RHKMKEI 232 >gi|260587727|ref|ZP_05853640.1| PP-loop family protein [Blautia hansenii DSM 20583] gi|260541992|gb|EEX22561.1| PP-loop family protein [Blautia hansenii DSM 20583] Length = 386 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 19/179 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76 I V +SGG DSM + + R K+ F I +D ET + + + + Sbjct: 137 GDKIAVCISGGKDSMLMAKLFQELQKHR---KVNFDVIFLVMDPGYNETNRKVIEENARL 193 Query: 77 CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L I ++ + + + R + AK + I H +DD + Sbjct: 194 ---LNIPITIFETNIFETVYEIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDVI 250 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWC 189 ET+ M G + M + + + RP R +DI+ + ++ + Sbjct: 251 ETILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPMYLIREDDIKHWRDYNDLHFI 304 >gi|167766681|ref|ZP_02438734.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1] gi|167711618|gb|EDS22197.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1] Length = 438 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +++++ + + I + +SGG DSM + + F + +D Sbjct: 179 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 236 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 E + + + + L I +V + + R + AK + Sbjct: 237 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 293 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H +DD +ET+ M + M + ++ + + RP R +DI Sbjct: 294 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 350 Query: 178 RSFLLQRNISWC 189 + + + + Sbjct: 351 KHWRDYNGLHFI 362 >gi|205830657|sp|Q0AA41|TTCA_ALHEH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 314 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 22/249 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++R + R + ++V +SGG DS LL L + R+ + + A+++D + Sbjct: 38 NAIRDY-RMIEEGDRVMVCLSGGKDSYALLDVLLRLQK-RAPVRFELVAVNLD-QKQPG- 93 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + + L + + ++ + R L+ A+ + Sbjct: 94 --FPEHVLPEYLASLGVPYRILEADTYSTVERVIPEGKTKCSLCSRLRRGLLYGAAEEMG 151 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177 + I H DD LET ++ G L+ M + + + RP + Sbjct: 152 CSKIALGHHRDDILETFFLNLF-----YGGRLAAMPPKLRSNNGRHVVIRPLAYVPEPYL 206 Query: 178 RSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVA 235 + + + +R ++ +R+ F L+ V+ ++ Sbjct: 207 ERYAERMAFPIIPCTLCGSQPDLKRQMIKAMLREWGEIEPRRLANIFSALQNVQPSHLAD 266 Query: 236 MLIPKYLTV 244 + ++ + Sbjct: 267 KELYDFINL 275 >gi|226951515|ref|ZP_03821979.1| PP-loop domain-containing protein [Acinetobacter sp. ATCC 27244] gi|294651155|ref|ZP_06728489.1| PP-loop superfamily ATPase [Acinetobacter haemolyticus ATCC 19194] gi|226837734|gb|EEH70117.1| PP-loop domain-containing protein [Acinetobacter sp. ATCC 27244] gi|292822951|gb|EFF81820.1| PP-loop superfamily ATPase [Acinetobacter haemolyticus ATCC 19194] Length = 301 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 21/268 (7%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R + + + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDY-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIMATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239 + R P N + R + D+ K+ + + N + Sbjct: 207 YAEMRKFPII--PCNLCGS-QENLQRAIINDMLREWDKQYPKRLHSIFGALQNVSPSQLA 263 Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267 ++ + L L L Sbjct: 264 DRELFDFEALDGQREFDLKDPEELKNRL 291 >gi|26553959|ref|NP_757893.1| hypothetical protein MYPE5070 [Mycoplasma penetrans HF-2] gi|26453967|dbj|BAC44297.1| conserved hypothetical protein [Mycoplasma penetrans HF-2] Length = 264 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 26/200 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVD--- 59 S I + + F + I V VSGG DSM +L AL +S + + Sbjct: 7 SIIRANKAF-NMIKNGDRIAVGVSGGKDSMLMLKALSIYKKIVKSELNWDIDVVGIHLKM 65 Query: 60 ---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYAL 109 H E + + + I VV K + + + A+ Sbjct: 66 NLCH-------IEYDPIIKYWNDMGINFKVVETTMGEILRGQIKKGKIQCSLCSKLKKAI 118 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + + AK +N + H DD +ET +M +G + L ++W RPF Sbjct: 119 LIDEAKKLNCNKVAMGHHADDAIETFFMNMI----NEGRIATFKPSMYLDRSDIWFIRPF 174 Query: 170 LRCRREDIRSFLLQRNISWC 189 + R +DI + N+ Sbjct: 175 IFAREKDIAKAANKENMPIV 194 >gi|126642690|ref|YP_001085674.1| hypothetical protein A1S_2656 [Acinetobacter baumannii ATCC 17978] Length = 259 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 24/252 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77 ++V VSGG DS LL L + I F ++V+ + ++V Sbjct: 5 GDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGFPEDVLP--RYM 59 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I + ++ A R + A+ I AT + H DD Sbjct: 60 EENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGATKVALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T ++ + K M + D + RP +DI + R Sbjct: 120 IIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIKYAELRKFPII- 174 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVH 245 P N + +R + +R+ D F L+ + +A L + Sbjct: 175 -PCNLCGSQENLQRAMINEMLREWDRQYPKRLHSIFGALQNVSPSQLADRDLFDFEVLDS 233 Query: 246 MRSIIAISQDIL 257 R + + L Sbjct: 234 QRELDFKDPEEL 245 >gi|1513300|gb|AAB06790.1| ORFveg136; similar to Saccharomyces cerevisiae chromosome VII reading frame ORF YGL211w encoded by EMBL Accession Number Z72733 [Dictyostelium discoideum] Length = 357 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 18/208 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L + ++L+ + + +S+D + D + V Sbjct: 54 RGDRVAIGASGGKDSTVLAEIM-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 112 Query: 78 SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + I ++S+K G + R + A + A I+T H Sbjct: 113 EQYPIPSQILSYKELYNWTMDDIVKEIGLKGNCTSCGVFRRQALDRGAVMLKANKIVTGH 172 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184 DD ETV+M R + C I+ + R PF + +I + + Sbjct: 173 NADDIAETVFMDLLRGDIPR----LQRCVNIITGSEGALPRSKPFKYTYQREIVMYAYFK 228 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212 + + R R F++D++ Sbjct: 229 KLDYFSTECIYAPNAYRGHARDFLKDLE 256 >gi|254785358|ref|YP_003072787.1| C32 tRNA thiolase [Teredinibacter turnerae T7901] gi|259550665|sp|C5BRQ7|TTCA_TERTT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|237687418|gb|ACR14682.1| conserved hypothetical protein [Teredinibacter turnerae T7901] Length = 302 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 84/252 (33%), Gaps = 25/252 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS G+L L S+ K + A+++D + +V Sbjct: 36 GDRVMVCLSGGKDSYGMLDILLSLQRTAPV-KFELVAVNLD-QKQPG---FPEHVLPAYL 90 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I + +V R + A+ I AT I H DD Sbjct: 91 DTLDIEYHIVERDTYSIVKSVVPEGKTTCGLCSRLRRGTLYGFAEKIGATKIALGHHRDD 150 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ G + D I RP C ED+ +F R Sbjct: 151 IVETLFLNLF----YAGRLKAMPPKLRSDDKRNIIIRPLAYCPEEDLEAFAQARAFPII- 205 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTV 244 P N + +R ++ +R D F L+ + + A+ LT+ Sbjct: 206 -PCNLCGSQENLQRQVIKEMLRGWDKQFPGRVETIFAALQRVSPSQLADNALFNFTDLTL 264 Query: 245 HMRSIIAISQDI 256 + AI D Sbjct: 265 DRSAPAAIEDDA 276 >gi|313500192|gb|ADR61558.1| TRNA 2-thiocytidine biosynthesis protein ttcA [Pseudomonas putida BIRD-1] Length = 274 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + I F ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|310816966|ref|YP_003964930.1| tRNA 2-thiocytidine biosynthesis protein [Ketogulonicigenium vulgare Y25] gi|308755701|gb|ADO43630.1| tRNA 2-thiocytidine biosynthesis protein [Ketogulonicigenium vulgare Y25] Length = 291 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 18/192 (9%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +++VR + +V LV +SGG DS LL L+ + R + A ++D Sbjct: 30 RIVQNVREAIDQYGMIVPGQRWLVCLSGGKDSYTLLAVLNEL-KWRGLLPVDLLACNLD- 87 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 + + + +++ + H + + + A R + Sbjct: 88 --QGQPNFPATVLPEFLTKMGVPHRIEYQDTYSIVVDKIPQGRTMCALCSRLRRGNLYRI 145 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + ++ H DD LET +M G + + D +L++ RP Sbjct: 146 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLLNEDGDLFVFRPLAHVA 201 Query: 174 REDIRSFLLQRN 185 D F + Sbjct: 202 EADCEKFASAMH 213 >gi|261257408|ref|ZP_05949941.1| putative C32 tRNA thiolase [Escherichia coli O157:H7 str. FRIK966] Length = 295 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V + +L + + +V + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|283798640|ref|ZP_06347793.1| ATPase of the PP family protein [Clostridium sp. M62/1] gi|291073625|gb|EFE10989.1| ATPase of the PP family protein [Clostridium sp. M62/1] Length = 334 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 10 RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FV++L +I V +SGG DSM L + +L + + +D Sbjct: 82 RPFVKALNEYDMIQEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 140 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + R + + + I +V R + +AK + Sbjct: 141 PENR---RMIEENARIMGIPITVFESDIFNVVVDVDQSPCYLCARMRRGYLYANAKKLGC 197 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H FDD +ET+ M M + ++ + + RP + DI++ Sbjct: 198 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADIQA 254 Query: 180 FLLQRNISW 188 + + + Sbjct: 255 WRDFNQLRF 263 >gi|301384487|ref|ZP_07232905.1| hypothetical protein PsyrptM_17700 [Pseudomonas syringae pv. tomato Max13] gi|302060521|ref|ZP_07252062.1| hypothetical protein PsyrptK_11080 [Pseudomonas syringae pv. tomato K40] gi|331016777|gb|EGH96833.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 274 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L I+F ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + A K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L + + + + N Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + R + SQ L ID T + V Sbjct: 247 LAD------RKLFDFSQ--LRIDETAASRFVNV 271 >gi|291561231|emb|CBL40030.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [butyrate-producing bacterium SS3/4] Length = 412 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 27/183 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76 I V +SGG DSM + L + GK+KF + ++ E + + + Sbjct: 172 GDKIAVCISGGKDSMLMAKLLQELQ---LHGKVKFDLVFLVMNPGYNE--DNW-NIILNN 225 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L I +V + R + HAK + I H FDD + Sbjct: 226 AKLLGIPINVFESDIFNIVADVDKSPCYLCARMRRGYLYSHAKELGCNKIALGHHFDDVI 285 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNI 186 ET M GM SG +T++ L + + RP R DI+++ ++ Sbjct: 286 ETTLM---------GMLYSGKVETMMPKLHSKNFEGMELIRPMYMVREADIKAWRDYNHL 336 Query: 187 SWC 189 + Sbjct: 337 HFI 339 >gi|24373901|ref|NP_717944.1| hypothetical protein SO_2354 [Shewanella oneidensis MR-1] gi|81461573|sp|Q8EEM4|TTCA_SHEON RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|24348323|gb|AAN55388.1|AE015676_10 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 310 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 20/194 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ + + A+++D + ++V L + + Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPGFPEDVLPA--YLDSLNVPYH 99 Query: 86 VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197 G + M +L D + RP CR +D+ + + P N Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNLCG 212 Query: 198 RFERVRVRRFVRDI 211 + R+ V+D+ Sbjct: 213 S-QENLKRQAVKDM 225 >gi|260880923|ref|ZP_05403147.2| PP-loop family protein [Mitsuokella multacida DSM 20544] gi|260849928|gb|EEX69935.1| PP-loop family protein [Mitsuokella multacida DSM 20544] Length = 401 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +E+V F LV P I V +SGG DSM + + F + + +D Sbjct: 146 KFVEAVCKF--ELVRPGDKIAVCISGGKDSMLMAKLFQDLKRHNKFP-FELVFLCMDPGY 202 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118 E + R + + L + + S + + R + A+ + Sbjct: 203 NEMNR---RIIEENAKLLHVPLTFFSTDIFESVFHVEESPCYLCAKMRRGYLYRKARALG 259 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 I H FDD +ET M A + M + + + RP DI+ Sbjct: 260 CNKIALGHHFDDVIETNLMSMLYSGAIRTMMPKVKSTSCP---GMELIRPLYYIHEADIK 316 Query: 179 SFLLQRNISWC 189 + + + Sbjct: 317 RWRDDNGLYFI 327 >gi|323172285|gb|EFZ57922.1| PP-loop family protein [Escherichia coli LT-68] Length = 311 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP R +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYSREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|17544894|ref|NP_518296.1| hypothetical protein RSc0175 [Ralstonia solanacearum GMI1000] gi|81506945|sp|Q8Y306|TTCA_RALSO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|17427183|emb|CAD13703.1| putative cog0037, predicted atpase of the pp-loop superfamily protein [Ralstonia solanacearum GMI1000] Length = 312 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR--YVSDVCSR 79 +LV +SGG DS +L L ++ R+ K A+++D + ++V Y+ V Sbjct: 34 VLVCLSGGKDSYTMLSVLMALQK-RAPIDFKLIAMNLD-QKQPGFPEDVLPGYLKKV--- 88 Query: 80 LRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + +V + R +I AK + A I H DD + Sbjct: 89 -GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIV 147 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191 T ++ G + M + D I RP C ++I ++ Sbjct: 148 NTFFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIAAYARAMEFPII-- 200 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + +R +V+ + + + A F L+ V + +A Sbjct: 201 PCNLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFSALQNVVPSHLADTDLFDFNGLTTG 260 Query: 249 IIAISQDIL 257 + I ++ L Sbjct: 261 LAKIGEEAL 269 >gi|205830654|sp|Q4K882|TTCA_PSEF5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 274 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 23/217 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M + D D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFYNGSLKAMPPKLLAD----DGRNVVIRPLAYCSEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 +++ + P N + R+ V+++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLQE 223 >gi|70731809|ref|YP_261551.1| C32 tRNA thiolase [Pseudomonas fluorescens Pf-5] gi|68346108|gb|AAY93714.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 288 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 23/217 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 35 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG 90 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 91 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 147 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M + D D + RP C +DI Sbjct: 148 GATKMALGHHRDDIVETFFLNMFYNGSLKAMPPKLLAD----DGRNVVIRPLAYCSEKDI 203 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 +++ + P N + R+ V+++ Sbjct: 204 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLQE 237 >gi|169831320|ref|YP_001717302.1| PP-loop domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638164|gb|ACA59670.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 297 Score = 87.7 bits (216), Expect = 3e-15, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 22/213 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 FL +E + L +LVAVSGG DS+ + L + + VD Sbjct: 30 FLRQVEKTIRRYQMLQPGERVLVAVSGGKDSLTVADVLDRL-------GYAVRGVHVDLG 82 Query: 62 LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------YALI 110 + + + + + + + + S K ++ R R ++ Sbjct: 83 IDDNGFSSESTALCREFFTARGLPLEIYSLKERFGRSIKDVGRRFNRFCSICGMTKRHVM 142 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A + T H DD ++ R G+ +P Sbjct: 143 NARAVEQGLDALATGHNLDDLSAALFANLMRWDRRYLA--KGLPSLPPEGGFCRKIKPLA 200 Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFER 201 ++I ++ R+I P + + +F+R Sbjct: 201 LLSEKEIATYAAVRDIRMVTATCPYSREAKFKR 233 >gi|330877101|gb|EGH11250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 274 Score = 87.7 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L I+F ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + A K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L + + + + N Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + R++ SQ L ID T + V Sbjct: 247 LAD------RNLFDFSQ--LRIDETAASRFVNV 271 >gi|310767700|gb|ADP12650.1| C32 tRNA thiolase [Erwinia sp. Ejp617] Length = 310 Score = 87.7 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D ++ Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119 + + +L + +++V+ + R ++ A + Sbjct: 83 GFPAHILPEYLEQLGVEYNIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + R P N +R + +RD D F ++ V + +A Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETLFTAMQNVVPSHLAD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 257 ANLFDFKHIRHGADVVDGGDLAFDRETL 284 >gi|300716862|ref|YP_003741665.1| ATPase [Erwinia billingiae Eb661] gi|299062698|emb|CAX59818.1| putative ATPase [Erwinia billingiae Eb661] Length = 297 Score = 87.7 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 23/234 (9%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ + I F ++V+ L + ++ Sbjct: 32 NMIEENDVVMACMSGGKDSFAMLDILLNL---KKVAPIHFDVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 +L I + +V R + A+ I AT I Sbjct: 87 LPAYFEKLDIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAERIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHMDDIVETLFLNIFHGARMKAM----PPKLRSDDGRNVVIRPLAYCREKDLIEYSEHKA 202 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ + D D F+ ++ + +A Sbjct: 203 FPII--PCNLCGSQENLQRQAIKSMLTDWDKKEPGRVESVFKSIQNVSPSQLAD 254 >gi|51596578|ref|YP_070769.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 32953] gi|186895636|ref|YP_001872748.1| C32 tRNA thiolase [Yersinia pseudotuberculosis PB1/+] gi|81639280|sp|Q66A78|TTCA_YERPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830673|sp|B2K5E0|TTCA_YERPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|51589860|emb|CAH21492.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|186698662|gb|ACC89291.1| PP-loop domain protein [Yersinia pseudotuberculosis PB1/+] Length = 313 Score = 87.7 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L S+ A+++D + +++ Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFSLIAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPDGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268 Query: 249 IIAISQDILNIDSTLL 264 I L D L Sbjct: 269 SDIIDGGDLAFDREAL 284 >gi|206578688|ref|YP_002238857.1| PP-loop family protein [Klebsiella pneumoniae 342] gi|288935785|ref|YP_003439844.1| PP-loop domain protein [Klebsiella variicola At-22] gi|290509811|ref|ZP_06549182.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55] gi|254790132|sp|B5XRN3|TTCA_KLEP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|206567746|gb|ACI09522.1| PP-loop family protein [Klebsiella pneumoniae 342] gi|288890494|gb|ADC58812.1| PP-loop domain protein [Klebsiella variicola At-22] gi|289779205|gb|EFD87202.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55] Length = 311 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + L D + Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|163745585|ref|ZP_02152945.1| PP-loop [Oceanibulbus indolifex HEL-45] gi|161382403|gb|EDQ06812.1| PP-loop [Oceanibulbus indolifex HEL-45] Length = 284 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 15/176 (8%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 LV +SGG DS LL LH + R + A ++D + + + Sbjct: 49 APKPKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVDLLACNLD---QGQPNFPATVLPEF 104 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ + H + + A R + A+ + ++ H D Sbjct: 105 LEKMGVPHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRD 164 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 D LET +M G + + + +L++ RP D F N Sbjct: 165 DILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAERDCERFATAMN 216 >gi|152969928|ref|YP_001335037.1| C32 tRNA thiolase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|205830598|sp|A6T886|TTCA_KLEP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150954777|gb|ABR76807.1| hypothetical protein KPN_01375 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 311 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262 + + L D Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDRE 282 >gi|39973603|ref|XP_368192.1| hypothetical protein MGG_01052 [Magnaporthe oryzae 70-15] gi|145017992|gb|EDK02271.1| hypothetical protein MGG_01052 [Magnaporthe oryzae 70-15] Length = 833 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 39/185 (21%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72 P + +A+SGG DSM + V ++F I VDH R + E + Sbjct: 92 PIPVALAISGGVDSMAMAWLCAEVRRLDPTMRVADHRVLRFMPIIVDHDYRRHSYREAKT 151 Query: 73 VSDVC-SRLRIAHSVVSW------------------------------KNSKPQ--TGLM 99 V D RL + + K+ +PQ Sbjct: 152 VGDFLRERLNMRPIIARIMWDKLDRDRVLNHGEPSGRSKGASQDDSRLKSIRPQDIPNFE 211 Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159 ARE RY L ++ + + AH DDQ E + MR + +G+ + + + Sbjct: 212 TVAREQRYRLFAQKMVHERSMSLFLAHHEDDQYEWLLMRLMDGHGPRGLVGIPAANQLPH 271 Query: 160 DLNLW 164 ++ Sbjct: 272 TQDIH 276 Score = 63.4 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 12/161 (7%) Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRR 206 G + + D + RP L ++ I + ++ + W ED +N D R +R Sbjct: 348 RGAPELEPCRVEDGGTMLYRPMLEFSKDRIIATCVENGVPWFEDSTNKDMTLTPRNAIRH 407 Query: 207 FVRDIDLH---------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257 V+ + A+ ++++ +L+ + + + + Y I + L Sbjct: 408 MVKHHTMPVALQKPAVLAMSNRIRRRLELQKQEADRIFNRLVFYEFHPNVGSIVVEFPNL 467 Query: 258 NIDSTLLFYLL--RVSAAICGGQISLPGYRSMERVMLFLKS 296 + + I ++ ++ R++ + Sbjct: 468 RRPGPRRRHSIYTTRWRQIALDNKTIAAAQAFRRLLRIVSP 508 >gi|28868890|ref|NP_791509.1| hypothetical protein PSPTO_1684 [Pseudomonas syringae pv. tomato str. DC3000] gi|81731877|sp|Q885Z7|TTCA_PSESM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|28852129|gb|AAO55204.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 274 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L I+F ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGVEYHIVEKDTHSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + A K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L + + + + N Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + R + SQ L ID T + V Sbjct: 247 LAD------RKLFDFSQ--LRIDETAASRFVNV 271 >gi|332796633|ref|YP_004458133.1| PP-loop family protein [Acidianus hospitalis W1] gi|332694368|gb|AEE93835.1| PP-loop family protein [Acidianus hospitalis W1] Length = 320 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 27/230 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDH 60 F + +E L + +AVSGG DS LL + + I + + +D Sbjct: 36 FENRVERTVRKYNMLEGTRKLAIAVSGGKDSTTLLHVMTKIAEKEGIEIIGITIDLGIDM 95 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALI 110 + + V + L + + +V K T A + R ++ Sbjct: 96 GK-KYSAKSVEFAIKNYEMLGVKYRIVKLKEEYGFTIDEAKVKIRRPVCSTCGLTKRYIL 154 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRP 168 + AK +A + T H +D + V L + N +I +P Sbjct: 155 EKVAKEESADTLATGHNLNDVAQYVLTGYYNGDILSLARL----RPVSPAENGYIKKIKP 210 Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDID 212 ++I ++ L + I + D RV ++RR + +++ Sbjct: 211 LFLSPEKEIMTYALVKGIPFIYDSC---PHTFRVGGETQDKIRRTIEEME 257 >gi|324113197|gb|EGC07172.1| C32 tRNA thiolase [Escherichia fergusonii B253] gi|325497404|gb|EGC95263.1| C32 tRNA thiolase [Escherichia fergusonii ECD227] Length = 311 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI+ F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGIKH 267 Query: 248 SIIAISQDILNIDSTLL 264 I+ L D L Sbjct: 268 GSEVINGGDLAFDREEL 284 >gi|71737240|ref|YP_275868.1| C32 tRNA thiolase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485919|ref|ZP_05639960.1| hypothetical protein PsyrptA_21801 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627103|ref|ZP_06460057.1| hypothetical protein PsyrpaN_18494 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648114|ref|ZP_06479457.1| hypothetical protein Psyrpa2_10249 [Pseudomonas syringae pv. aesculi str. 2250] gi|298487955|ref|ZP_07005994.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635491|sp|Q48FG8|TTCA_PSE14 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71557793|gb|AAZ37004.1| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157506|gb|EFH98587.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323411|gb|EFW79499.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. B076] gi|320327607|gb|EFW83619.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. race 4] gi|330866036|gb|EGH00745.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876302|gb|EGH10451.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. glycinea str. race 4] gi|330889410|gb|EGH22071.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. mori str. 301020] gi|330986729|gb|EGH84832.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 274 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ + ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|148549282|ref|YP_001269384.1| C32 tRNA thiolase [Pseudomonas putida F1] gi|205830614|sp|A5W7U0|TTCA_PSEP1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|148513340|gb|ABQ80200.1| PP-loop domain protein [Pseudomonas putida F1] Length = 274 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + I F ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKAFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|238749377|ref|ZP_04610882.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC 43380] gi|238712032|gb|EEQ04245.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC 43380] Length = 313 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L S+ A+++D + +++ Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SDIVDGGDLAFDREEL 284 >gi|238762544|ref|ZP_04623514.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia kristensenii ATCC 33638] gi|238699189|gb|EEP91936.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia kristensenii ATCC 33638] Length = 318 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ A+++D + +++ Sbjct: 44 GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 99 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 100 KQGVEYKIVEENTYGIVKDIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 159 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 160 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAREYPII-- 213 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + + Sbjct: 214 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHQLFDFKSITHN 273 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 274 SEIVDGGDLAFDREEL 289 >gi|330811221|ref|YP_004355683.1| tRNA 2-thiocytidine biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379329|gb|AEA70679.1| tRNA 2-thiocytidine biosynthesis protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 274 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 23/217 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLESLGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ G + D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMF----YNGSLKAMPPKLRADDGRNVVIRPLAYCSEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 +++ + P N + R+ V+++ Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEMLQE 223 >gi|306813631|ref|ZP_07447812.1| C32 tRNA thiolase [Escherichia coli NC101] gi|305852905|gb|EFM53350.1| C32 tRNA thiolase [Escherichia coli NC101] Length = 311 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+TV++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTVFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|242239175|ref|YP_002987356.1| C32 tRNA thiolase [Dickeya dadantii Ech703] gi|242131232|gb|ACS85534.1| PP-loop domain protein [Dickeya dadantii Ech703] Length = 313 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 90/275 (32%), Gaps = 35/275 (12%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + ++V +SGG DS +L L ++ I FS I+V+ Sbjct: 28 EAIADF-SMIEDGDRVMVCLSGGKDSYTMLEILRNLQQS---APISFSLIAVN------- 76 Query: 67 KDEVR------YVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISE 112 + + +V + + I + +V + R ++ Sbjct: 77 -LDQKQPGFPGHVLPNYLDSIGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYR 135 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + AT I H DD L+T+++ KGM M D D + RP C Sbjct: 136 TATELGATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYC 191 Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 R +DI F R P N +R ++ +RD D F ++ Sbjct: 192 REKDIERFAEARQFPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQSV 249 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 V + + + L D L Sbjct: 250 VPSHLCDTNLFDFKSIRHGGEVVDGGDLAFDREEL 284 >gi|302131995|ref|ZP_07257985.1| hypothetical protein PsyrptN_11424 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 253 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 85/261 (32%), Gaps = 30/261 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L I+F ++V+ + +V Sbjct: 11 GDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG---FPEHVLPAY 64 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 65 LKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQIGATKMALGHHRD 124 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A K M D + RP C +DI+++ + Sbjct: 125 DIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFPII 180 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ L + + + + N + R + Sbjct: 181 --PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQLAD------RKL 231 Query: 250 IAISQDILNIDSTLLFYLLRV 270 SQ L ID T + V Sbjct: 232 FDFSQ--LRIDETAASRFVNV 250 >gi|239996110|ref|ZP_04716634.1| ATPase of the PP-loop superfamily protein [Alteromonas macleodii ATCC 27126] Length = 317 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 21/185 (11%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 ++V +SGG DS +L L + + I F ++V+ L + ++ + Sbjct: 49 DKVMVCLSGGKDSYTMLDILLFL---KKIAPIHFDIVAVN--LDQKQPGFPEHILPEYLE 103 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V K+ P+ + R ++ AK + AT I H DD Sbjct: 104 SIGVDYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDM 163 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190 LET ++ L M ++ D I RP C +DI + Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIEKYSQAAEFPII- 217 Query: 191 DPSNT 195 P N Sbjct: 218 -PCNL 221 >gi|328543191|ref|YP_004303300.1| ATPase, PP superfamily [polymorphum gilvum SL003B-26A1] gi|326412937|gb|ADZ70000.1| ATPase, PP superfamily [Polymorphum gilvum SL003B-26A1] Length = 322 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 23/228 (10%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R+ YP LV +SGG DS LL L + R + A ++D + +V Sbjct: 58 ARADGYPPKWLVCLSGGKDSYTLLAVLMDL-KWRGLLPVDLIACNLD-QAQPGFPADVLP 115 Query: 73 VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 + I H +V + R ++ A+ I+ Sbjct: 116 A--FFEKNAIKHVIVREDTYSIVTDKIPAHKTYCSLCSRLRRGILYRIAREQGCEAIVLG 173 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H +D LET +M G S + D +L++ RP C DI F Sbjct: 174 HHREDILETFFMNLFHG----GRLASMPPKLLNDDGDLFVLRPLSYCSENDIARFARAMA 229 Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHA---LYLKMKKFQDLR 227 P N D +R ++R ++ + A L + + R Sbjct: 230 FPII--PCNLCGSQDGLQREEIKRMLQAWEQQAPGRLGVMARALAHTR 275 >gi|238894461|ref|YP_002919195.1| C32 tRNA thiolase [Klebsiella pneumoniae NTUH-K2044] gi|238546777|dbj|BAH63128.1| hypothetical protein KP1_2451 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 311 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262 + + L D Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDRE 282 >gi|170768722|ref|ZP_02903175.1| protein YdaO [Escherichia albertii TW07627] gi|170122270|gb|EDS91201.1| protein YdaO [Escherichia albertii TW07627] Length = 311 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + +V Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHVLPKYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI+ F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|156933849|ref|YP_001437764.1| C32 tRNA thiolase [Cronobacter sakazakii ATCC BAA-894] gi|205830588|sp|A7MLI7|TTCA_ENTS8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|156532103|gb|ABU76929.1| hypothetical protein ESA_01675 [Cronobacter sakazakii ATCC BAA-894] Length = 310 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 22/281 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 S L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 SSLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSQAKGFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + + Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTELFDFKGIHH 267 Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288 ++ L D + + + +E Sbjct: 268 GSEVVNGGDLAFDREEIPMMPAGWTPEDDAAPPMQRLDVLE 308 >gi|330014984|ref|ZP_08308019.1| PP-loop family protein [Klebsiella sp. MS 92-3] gi|328532464|gb|EGF59261.1| PP-loop family protein [Klebsiella sp. MS 92-3] Length = 310 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 43 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 98 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 99 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 156 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 157 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 212 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 213 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 270 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262 + + L D Sbjct: 271 DVNLFDFKGITHGSEVVDGGDLAFDRE 297 >gi|291279839|ref|YP_003496674.1| hypothetical protein DEFDS_1458 [Deferribacter desulfuricans SSM1] gi|290754541|dbj|BAI80918.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 223 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 42/223 (18%) Query: 1 MFLSPIESVRFFVRSLVYPAH--------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK 52 M IE + + SL+ ++V VSGG DS L L + SF K Sbjct: 1 MMYKKIE--KRLIGSLLKTHQKYPFLGEDLIVGVSGGIDSAVLYHLLSKFYENNSFAG-K 57 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALIS 111 + V + + + ++ V K R I Sbjct: 58 IYPVHV--GISGD------------LKTTLPDAINVEVKEDVKFPIDCYFCSRLRRHYIF 103 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 + AK + ++ AH DD E L + Y + + RPF Sbjct: 104 QFAKEVGCKYVLFAHHADDFAERFLWNIFYQKK-----LESLPVKRDYFGEVTVLRPFFY 158 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFE---RVRVRRFVRDI 211 + DI + + I TD+ ++ + RV FV + Sbjct: 159 VFKRDIEKYAKKYGI--------TDNEYKCLVKNRVTGFVEKV 193 >gi|325980894|ref|YP_004293296.1| PP-loop domain-containing protein [Nitrosomonas sp. AL212] gi|325530413|gb|ADZ25134.1| PP-loop domain protein [Nitrosomonas sp. AL212] Length = 302 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 28/281 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L ++ S + A+++D + ++V + Sbjct: 32 AGDRIMVCLSGGKDSYALLDILRNLQ-IHSPVNFELIAVNLD-QKQPGFPEQVLP--NYL 87 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +++ + +V + + R ++ A + AT I H DD Sbjct: 88 TQIGMPFQIVEQDTYSVVKRVIAEGKTTCSLCSRLRRGVLYRVAGELGATKIALGHHRDD 147 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +D+ ++ + Sbjct: 148 ILETLFLNMF-----YGGKLKAMPPKLVSDNGRHIVIRPLAYCKEKDLAAYAEISDFPII 202 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ R+ ++++ + + + + N + + S+ Sbjct: 203 --PCNLCGS-QKNLQRQAIKEMMQQWDKKFPGRLETMFRSIQNIQLSHLADTSHYNFVSL 259 Query: 250 IAISQDILNIDSTL--------LFYLLRVSAAICGGQISLP 282 A Q N D+ + +L + A G+ +P Sbjct: 260 QAQDQPFENGDTAFDEETFEPNIEEMLALGAEEATGRPLVP 300 >gi|330966571|gb|EGH66831.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 274 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L I+F ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPRYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + A K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L + + + + N Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + R++ SQ L ID T + V Sbjct: 247 LAD------RNLFDFSQ--LRIDETAASRFVNV 271 >gi|312961654|ref|ZP_07776152.1| hypothetical protein PFWH6_3573 [Pseudomonas fluorescens WH6] gi|311283913|gb|EFQ62496.1| hypothetical protein PFWH6_3573 [Pseudomonas fluorescens WH6] Length = 292 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 23/252 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L + I+F ++V+ + Sbjct: 39 EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIQFEIVAVNMDQKQPG 94 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 95 ---FPEHVLPAYLKALGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 151 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 152 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 207 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ L + + + + N + Sbjct: 208 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLLDWERKTPGRTESIFRSLQNVIPSQ 264 Query: 238 IPKYLTVHMRSI 249 + S+ Sbjct: 265 LADRNLFDFTSL 276 >gi|189426525|ref|YP_001953702.1| C32 tRNA thiolase [Geobacter lovleyi SZ] gi|189422784|gb|ACD97182.1| PP-loop domain protein [Geobacter lovleyi SZ] Length = 258 Score = 87.3 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 14/215 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVC 77 I V +SGG DS+ LL+ L + R+ + +++D +V+D+ Sbjct: 32 GDRICVGISGGKDSLLLLMLLVEMQR-RAPINYQLVPVTIDAGFPGFNTTTIQNFVADLG 90 Query: 78 SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I H+ + +P + + + + A+ + L+ H DD +ET Sbjct: 91 LELSIEQTGHASLITTKLRPGSSYCSFCARLKRGALYGAARRLGCNLLALGHHRDDFIET 150 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 + + K M +CDT ++ + RP + EDI + + Q I+ N Sbjct: 151 LLLNQFFIGTLKAMAAKTVCDT----GDITVIRPLVYLAEEDIITTVRQAGITTV--SCN 204 Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D +R R+++ + ++ +K L Sbjct: 205 CPVADADQQRQRMKQLLHRLEQEIPQIKNSLLAAL 239 >gi|321467456|gb|EFX78446.1| hypothetical protein DAPPUDRAFT_105239 [Daphnia pulex] Length = 679 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 35/225 (15%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLR 63 +E++ + + + +L+ VSGG DS+ LL L I AI+VD Sbjct: 428 LEALLRY-KMISNGDRVLICVSGGKDSLSLLHTLRQYQKQSKGFGISFDIGAITVD---- 482 Query: 64 ETAKDEVRYVSD---------VCSRLRIAHSVVSWKNSKPQT--GLMAAAREARYALISE 112 + + +++ + L+ ++ + + R I Sbjct: 483 PGSSS-LAFLTSMSGNVLNILLERALQTPLTIDQMCVNIHHSYSNNSLGGR------IYA 535 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ +I DD E+ M + + + + + +L I RPF+ Sbjct: 536 TARNHGFNVIALGQHLDDLAESFLMSTFHNGRLR----TMKAAYANRERDLKIIRPFVYV 591 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDL 213 R +++R F + P N F ER R+++ + +L Sbjct: 592 REKELRQFASDTRLPVI--PENCPACFEAPKERHRIKQLLAQQEL 634 >gi|320169682|gb|EFW46581.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 879 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLW--ISRPFL 170 AK++ + ++ AH DD+LE++ MR R G+ G + + D + + I RP L Sbjct: 387 AKSMFSPVLAVAHHADDRLESMIMRFSRASQMDGLRGPMAWYNRLSPDNSSFFSIVRPLL 446 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + + + + DPSN D F R VR +R + Sbjct: 447 PFPKARLVATCEAMGVPYVRDPSNDDLAFRRNSVRFALRAL 487 Score = 48.4 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 18/32 (56%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49 +HI +AVSGG DSM L+ LH + G Sbjct: 105 PKSHIAIAVSGGPDSMALVALLHRYMMTSRLG 136 Score = 48.0 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 49 GKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRI---AHSVVSWKNSKPQTGLMAAARE 104 A +VDH R + DEV +V + R I + + AR+ Sbjct: 197 PPRNLLAFTVDHGFRPESADEVVFVKKLLERRFGIQTYPLKITWPDGLPSGPSKLGDARD 256 Query: 105 ARYALISEHAKTINATLIMTAHTF 128 RY ++++ + TL A T Sbjct: 257 QRYQMMADELVKMRQTLETAAQTA 280 >gi|229591221|ref|YP_002873340.1| C32 tRNA thiolase [Pseudomonas fluorescens SBW25] gi|259550641|sp|C3JY43|TTCA_PSEFS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|229363087|emb|CAY50081.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 274 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 23/252 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L + I+F ++V+ + Sbjct: 21 EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIQFEIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 YV L + + +V + R + A I Sbjct: 77 ---FPEYVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ L + + + + N + Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEMLLDWERKTPGRTESIFRSLQNVIPSQ 246 Query: 238 IPKYLTVHMRSI 249 + S+ Sbjct: 247 LADRNLFDFASL 258 >gi|146329374|ref|YP_001209974.1| adenine nucleotide alpha hydrolase ATP-binding family protein [Dichelobacter nodosus VCS1703A] gi|205830579|sp|A5EXQ4|TTCA_DICNV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|146232844|gb|ABQ13822.1| adenine nucleotide alpha hydrolase ATP-binding family protein [Dichelobacter nodosus VCS1703A] Length = 267 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 21/191 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + I+V +SGG DS LL L ++ I F I+V+ L + + V Sbjct: 24 QMIADGDRIMVCLSGGKDSYALLDILLALQKS---APIHFEIIAVN--LNQKFPNFPERV 78 Query: 74 S-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTA 125 D +L + + ++ + + + R ++ +A+ T I Sbjct: 79 LPDYLEKLGVKYDIIEHDTYQVVMEKIPAGKTMCSLCSRLRRGILYRYAEEHGITKIALG 138 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184 H D +ET ++ L M +L D I RP + C +DI + + Sbjct: 139 HHKIDVIETFFLNLFFTGR-----LKAMPAKLLSDNKKQIVIRPLVYCDEKDIVKYAKLK 193 Query: 185 NISWCEDPSNT 195 PSN Sbjct: 194 AFPII--PSNL 202 >gi|320100612|ref|YP_004176204.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752964|gb|ADV64722.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162] Length = 320 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 15/170 (8%) Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90 DSM LL + G K + V+ + + V + C L + +V+ + Sbjct: 60 DSMSLLAI--TAKRRVEMGVEKIVGVHVNLGIEGYSDLAEAAVREYCGSLGVECTVLRLR 117 Query: 91 NSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140 + A+R R LI+ +A A+ + T H DD + Sbjct: 118 DILGVGLPELASRAGRPPCSVCGLVKRYLITAYAVATGASAVFTGHHLDDAARYMLKDLY 177 Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + GL + ++P + ++DI ++ + E Sbjct: 178 VGDFKSLAGLKPAVREPGLPVK---AKPLITLGKKDIEAYAELAGVPHLE 224 >gi|161613875|ref|YP_001587840.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205830623|sp|A9MXN4|TTCA_SALPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|161363239|gb|ABX67007.1| hypothetical protein SPAB_01611 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 311 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|331013475|gb|EGH93531.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 274 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRGDDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ + ++ ++ Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271 >gi|315650358|ref|ZP_07903430.1| PP-loop family protein [Eubacterium saburreum DSM 3986] gi|315487469|gb|EFU77779.1| PP-loop family protein [Eubacterium saburreum DSM 3986] Length = 381 Score = 86.9 bits (214), Expect = 5e-15, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 77/234 (32%), Gaps = 29/234 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76 I V +SGG DSM + +L + ++ D++ Y + D Sbjct: 143 GDKIAVCISGGKDSMLMAKLFQELLR-HGKKNFTLVFLVMN----PG-YDDINYQTILDN 196 Query: 77 CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 L + +V ++ + R + AK + I H FDD + Sbjct: 197 AKLLDVPITVFESSIYDIVAEDEKSPCYLCARMRRGHLYAKAKELGCNKIALGHHFDDVI 256 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ET+ M G + M + + + RP R +DI + +S+ Sbjct: 257 ETIVMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIIHWARYNELSFIR 311 Query: 191 DPS----NTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 N R +V++ +R++ Y++ F+ + + V Sbjct: 312 CACRLTDNCSISETGDKGSMRAQVKKLIRELAAKNPYIEKNIFRSVENVSLDTV 365 >gi|82544200|ref|YP_408147.1| C32 tRNA thiolase [Shigella boydii Sb227] gi|123559537|sp|Q320D9|TTCA_SHIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|81245611|gb|ABB66319.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 311 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 TTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|24113173|ref|NP_707683.1| C32 tRNA thiolase [Shigella flexneri 2a str. 301] gi|30062867|ref|NP_837038.1| C32 tRNA thiolase [Shigella flexneri 2a str. 2457T] gi|110805759|ref|YP_689279.1| C32 tRNA thiolase [Shigella flexneri 5 str. 8401] gi|81723327|sp|Q83KS7|TTCA_SHIFL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123048160|sp|Q0T3Z1|TTCA_SHIF8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|24052163|gb|AAN43390.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041115|gb|AAP16845.1| hypothetical protein S1448 [Shigella flexneri 2a str. 2457T] gi|110615307|gb|ABF03974.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281601229|gb|ADA74213.1| ATPase [Shigella flexneri 2002017] gi|313650582|gb|EFS14985.1| PP-loop family protein [Shigella flexneri 2a str. 2457T] gi|332757685|gb|EGJ88016.1| PP-loop family protein [Shigella flexneri 4343-70] gi|332760198|gb|EGJ90494.1| PP-loop family protein [Shigella flexneri K-671] gi|332767615|gb|EGJ97808.1| C32 tRNA thiolase [Shigella flexneri 2930-71] gi|333004457|gb|EGK23987.1| PP-loop family protein [Shigella flexneri VA-6] gi|333004753|gb|EGK24275.1| PP-loop family protein [Shigella flexneri K-218] gi|333007299|gb|EGK26781.1| PP-loop family protein [Shigella flexneri K-272] gi|333018636|gb|EGK37930.1| PP-loop family protein [Shigella flexneri K-304] gi|333019295|gb|EGK38579.1| PP-loop family protein [Shigella flexneri K-227] Length = 311 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 TTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|56413420|ref|YP_150495.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168235782|ref|ZP_02660840.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735405|ref|YP_002114682.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197362343|ref|YP_002141980.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204927784|ref|ZP_03218985.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911960|ref|ZP_04655797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81360568|sp|Q5PHS1|TTCA_SALPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790145|sp|B5BJ71|TTCA_SALPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790146|sp|B4TWA6|TTCA_SALSV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56127677|gb|AAV77183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194710907|gb|ACF90128.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093820|emb|CAR59303.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197291136|gb|EDY30489.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323126|gb|EDZ08322.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322614907|gb|EFY11832.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619347|gb|EFY16227.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623159|gb|EFY20001.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628448|gb|EFY25236.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634856|gb|EFY31587.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638579|gb|EFY35274.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640886|gb|EFY37534.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645385|gb|EFY41913.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651730|gb|EFY48102.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654370|gb|EFY50692.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661211|gb|EFY57437.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662661|gb|EFY58868.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667728|gb|EFY63888.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671860|gb|EFY67981.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677095|gb|EFY73159.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680243|gb|EFY76282.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685328|gb|EFY81324.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194309|gb|EFZ79505.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199387|gb|EFZ84481.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204135|gb|EFZ89148.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205859|gb|EFZ90822.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217186|gb|EGA01907.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220065|gb|EGA04533.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227264|gb|EGA11434.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232048|gb|EGA16155.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234575|gb|EGA18662.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238028|gb|EGA22087.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243371|gb|EGA27390.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246178|gb|EGA30163.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253679|gb|EGA37506.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259112|gb|EGA42758.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260420|gb|EGA44033.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266492|gb|EGA49979.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271216|gb|EGA54643.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 311 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|146304686|ref|YP_001192002.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702936|gb|ABP96078.1| PP-loop domain protein [Metallosphaera sedula DSM 5348] Length = 315 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 36/245 (14%) Query: 2 FLSPI-ESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 FLS + E V + L + +L+AVSGG DS+ L L V+ K A ++ Sbjct: 27 FLSDVQERVAREAKKLGVTSVSRVLIAVSGGKDSLVLADTLSKVMD-----PSKLIAFNI 81 Query: 59 DHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREA-------- 105 ++ +D+V+ + L I S+K S + AR Sbjct: 82 VEGIQGYNREDQVKELYHYLRDLGIELISTSFKTSVGYSLDEMVSSSRARGLNIAACTFC 141 Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R LI++ + + A L+ T H DD+ +T+ + R K M + G L D Sbjct: 142 GGFRRKLINQAGRDVKADLVATGHNLDDEAQTIIINLLRGDVRKLMRV-GESPLKLSDKF 200 Query: 163 LWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRF--ERVRVRRFVRDIDLHALYL 218 + +P + + + + + E P + R +R VRD+ ++AL Sbjct: 201 VMRVKPLRKIYEWETTMYAFLKGFKFQEVECP------YISARPTMRAKVRDL-MYALEE 253 Query: 219 KMKKF 223 K F Sbjct: 254 KSPGF 258 >gi|239907698|ref|YP_002954439.1| hypothetical protein DMR_30620 [Desulfovibrio magneticus RS-1] gi|239797564|dbj|BAH76553.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 308 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 22/199 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E+ + +LVAVSGG DS+ L+ L + G + + V Sbjct: 30 FKKQVETAVRRHGMIGRDEKVLVAVSGGKDSLALMRVLTDL------GHV-VEGLHVHLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112 + +++ C+ + V+ + + A + + + Sbjct: 83 IPDSSDPVAERTRAFCAASGLTLHVLHTAEHGLAVPDVKDAVRRPVCAVCGKIKRHYFNR 142 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170 A + T H DD ET R + G L ++ +P Sbjct: 143 FAYENGFAALATGHNLDD--ETA--RLFANVLRWDPAYLGTQGPTLPGEGKFVRKIKPLY 198 Query: 171 RCRREDIRSFLLQRNISWC 189 R + ++ + I Sbjct: 199 RLTEFETAAYCFLKGIDHW 217 >gi|325277005|ref|ZP_08142671.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas sp. TJI-51] gi|324097859|gb|EGB96039.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas sp. TJI-51] Length = 274 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + I F ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKALGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C +DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKAFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|323213900|gb|EFZ98671.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 310 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|152987414|ref|YP_001349540.1| hypothetical protein PSPA7_4186 [Pseudomonas aeruginosa PA7] gi|205830611|sp|A6V906|TTCA_PSEA7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150962572|gb|ABR84597.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 274 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L + I+F ++V+ H L Sbjct: 32 GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82 Query: 69 EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + I +SVV K + +T + R + A I AT + Sbjct: 83 -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD LET ++ G L M +L D + RP C +DI ++ Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + P N + R+ V+++ L + + + + N V + Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252 Query: 244 VHMRSI 249 S+ Sbjct: 253 FDFASL 258 >gi|298708709|emb|CBJ49206.1| conserved unknown protein [Ectocarpus siliculosus] Length = 1257 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 16/234 (6%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + + R + + + +SGG DSM LL L + R+ + + +VD Sbjct: 875 MRAVGQAVQAWRMIEDGDRLCLGLSGGKDSMTLLHVLLHLQK-RAPITFEVACATVD--- 930 Query: 63 RETAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKT 116 +T + + RL + + K S L A + L+ + Sbjct: 931 PQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCARMKRGLLYACCRE 990 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 ++ A DD E+ M + + + + + + ++ + RP R Sbjct: 991 QGYNKLVLAQHLDDLAESFIMSALHNGQVR----TMKANYKIEAGDVRVIRPLCYAREAL 1046 Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + F + + N FE + R V+ + L + +LR + Sbjct: 1047 TKDFARTNRLPLVNE--NCPACFEEPKERHRVKKMLAKEESLFPSMYANLRKAL 1098 >gi|307822366|ref|ZP_07652598.1| PP-loop domain protein [Methylobacter tundripaludum SV96] gi|307736932|gb|EFO07777.1| PP-loop domain protein [Methylobacter tundripaludum SV96] Length = 284 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + + + A+++D + +V + Sbjct: 36 GDKVMVCLSGGKDSFTLLDILMHLQKTAPV-EFELIAVNLD-QKQPG---FPEHVLPEYL 90 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + + V + T R + +A+ N T I H DD Sbjct: 91 ASLDVPYHIIEKDTYSVVKRVIPEGTTTCGLCSRLRRGTLYGYAEANNVTKIALGHHRDD 150 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET ++ K M + D D I RP R +DI +N Sbjct: 151 ILETFFLNIFYGGKLKAMPPKLLSD----DKKNIIIRPLAYTREKDIERLAAFKNYPII- 205 Query: 191 DPSNT 195 P N Sbjct: 206 -PCNL 209 >gi|300853679|ref|YP_003778663.1| putative ATPase [Clostridium ljungdahlii DSM 13528] gi|300433794|gb|ADK13561.1| predicted ATPase [Clostridium ljungdahlii DSM 13528] Length = 290 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCL 62 + ++ F + + + VAVSGG DS+ + + ++F A+ D Sbjct: 39 KFVRAISEF-KLVEEGDKVAVAVSGGKDSLTMAKLFQELQKHWKVNFNLEFIAM--DPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEH 113 E + + C L I + + ++ + + R + Sbjct: 96 HED-------IKKLLISNCEYLNIPVHIFESGIFNVVDNIAKDYPCYMCAKMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172 AK + + H F+D +ET + G + M + + + RP Sbjct: 149 AKELGCNKLALGHHFNDVIETTLLNIF----YSGSFKTMMPKLRSQNYEGIELIRPLYYV 204 Query: 173 RREDIRSFLLQRNI 186 I F+ I Sbjct: 205 EESYIERFIQSSGI 218 >gi|269119262|ref|YP_003307439.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386] gi|268613140|gb|ACZ07508.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386] Length = 276 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 16/189 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V F LV I +A+SGG DS+ LL L L +F A++++ Sbjct: 36 KFLKAVNEF--GLVKDGDKIAIAISGGKDSL-LLYKLFQRLKKDKRRNFEFRAVNLNPGF 92 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTI 117 ++ ++ + +L I + WK + + + R ++ + + Sbjct: 93 KKE---DLDNFKNNLLKLDIDCEIFDTNIWKIANEKAKDYPCFLCAKMRRGILYKKVEEY 149 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + L + RP + +DI Sbjct: 150 GYNKLALGHHFDDVIETTLINIF----YSGSVKTMTPEVDSTSGKLKVIRPLIYVEEKDI 205 Query: 178 RSFLLQRNI 186 ++ + I Sbjct: 206 INYTKKNGI 214 >gi|289522928|ref|ZP_06439782.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503952|gb|EFD25116.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 29/237 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 M +++ F + + ILVAVSGG DS+ L L + + ++ Sbjct: 30 MLKRAAKAIDEF-KMFTKDSKILVAVSGGKDSLALWDILTRL-------GYNAHGLYINL 81 Query: 61 CLRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------EAR 106 + E + + +R+ VV+ K + A R Sbjct: 82 GIEENDYSNESEELSRTFANRIGKKLYVVNVK-EIHGMSIPDKAYSKKRKTCSVCGVTKR 140 Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166 Y +++ A+ N +I+T H DDQ + + + L+ + Sbjct: 141 Y-YMNKTAREGNFDVIVTGHNLDDQAAALLGNLL-YWKFDYLAKGAPYSPPLWKGEFAKA 198 Query: 167 RPFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 +P + C ++ + L + I + E P + F R + + +I+ ++ K Sbjct: 199 KPLILCTEKENTVYCLLQGIDYIQKECPYSEGATFLRWK--HILNEIEENSPGAKQA 253 >gi|167992837|ref|ZP_02573933.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205329037|gb|EDZ15801.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267993586|gb|ACY88471.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|332988541|gb|AEF07524.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 311 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|326791339|ref|YP_004309160.1| PP-loop domain protein [Clostridium lentocellum DSM 5427] gi|326542103|gb|ADZ83962.1| PP-loop domain protein [Clostridium lentocellum DSM 5427] Length = 281 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 11/178 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DSM L + + K + + +D + + D Sbjct: 33 IQNGDKIAVCISGGKDSMLLAKCMQELQRHWQV-KFELVFLVMDPGYNPYNRKVIE---D 88 Query: 76 VCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I ++ ++ + R + + AK + I H FDD Sbjct: 89 NAKLLNIPITIFESPIFDVVAEVEDTPCYLCARMRRGYLYKEAKDLGCNKIALGHHFDDV 148 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET+ M K M + Y+ + + RP + DI +++ +S+ Sbjct: 149 IETILMSMLYSGQIKTM--MPKLHSTNYE-GMELIRPLYLVKEADIVAWVRYNELSFI 203 >gi|168819457|ref|ZP_02831457.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|200390490|ref|ZP_03217101.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602935|gb|EDZ01481.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205343858|gb|EDZ30622.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085852|emb|CBY95628.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 311 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 I L D + Sbjct: 256 DTNLFDFKGITHGSEVIDGGDLAFDREEI 284 >gi|66357668|ref|XP_626012.1| MJ1157-like thiouridine synthase (Pploop atpase) plus Zn ribbon. involved in RNA metabolism. [Cryptosporidium parvum Iowa II] gi|46227217|gb|EAK88167.1| MJ1157-like thiouridine synthase (Pploop atpase) plus Zn ribbon. involved in RNA metabolism. [Cryptosporidium parvum Iowa II] Length = 306 Score = 86.9 bits (214), Expect = 6e-15, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 34/256 (13%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + V +SGG DS LL L+ + + R I+ I+VD ++ D + V Sbjct: 11 RVGVCISGGKDSSVLLNVLYEL-NKRKDYGIELELIAVDEGIKGYRDDSLEVVKYQQEYY 69 Query: 81 RIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 +++S+K+ ++ R + + +NA +I T H+ D Sbjct: 70 NCPLTILSFKDMFNTTMDEIQSKSSKSNSCTYCGVFRRKALDIGSYKVNADVICTGHSCD 129 Query: 130 DQLETVYMRSQRDYAEKGM----------------GLSGMCDTILYDLNLW-ISRPFLRC 172 D ET+ + R + + LN+ +P + C Sbjct: 130 DTCETLLLNILRGDFNRLRRCINPITNNEITTTKDQMQNHDSQNEAFLNIKPRVKPLMYC 189 Query: 173 RREDIRSFLLQRNISWCEDPSNTD-DRFE---RVRVRRFVRDIDLHALYLKMKKFQDLRV 228 ++I + N+ + D + R +R+ ++ D + + Q+L + Sbjct: 190 YEKEIVLYAHYLNLKYFSTECTYSVDAYRGVSREFIRK-IQSFDYKYSFNMILAAQELNL 248 Query: 229 KVNNAVAMLIPKYLTV 244 + +N+ I + T+ Sbjct: 249 EQSNSSPNYIARKCTI 264 >gi|260549245|ref|ZP_05823465.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter sp. RUH2624] gi|260407651|gb|EEX01124.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter sp. RUH2624] Length = 301 Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 20/196 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66 ++R F + ++V VSGG DS LL L + I F ++V+ + Sbjct: 37 AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92 Query: 67 KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 ++V I + + ++ + + A R + A+ I A Sbjct: 93 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T + H DD + T ++ + K M + D + RP +DI Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206 Query: 180 FLLQRNISWCEDPSNT 195 + R P N Sbjct: 207 YAELRKFPII--PCNL 220 >gi|254466190|ref|ZP_05079601.1| hypothetical protein RBY4I_2798 [Rhodobacterales bacterium Y4I] gi|206687098|gb|EDZ47580.1| hypothetical protein RBY4I_2798 [Rhodobacterales bacterium Y4I] Length = 295 Score = 86.5 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R LV +SGG DS LL L+ + R + A ++D + + Sbjct: 46 REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ + H + + A R + A+ + ++ H Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 161 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD LET +M G + + + +L++ RP D F N Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMNY 217 Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + D +R +V++ + + ++ + F+ L Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258 >gi|330911208|gb|EGH39718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Escherichia coli AA86] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|324006197|gb|EGB75416.1| PP-loop family protein [Escherichia coli MS 57-2] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|170683989|ref|YP_001743832.1| C32 tRNA thiolase [Escherichia coli SMS-3-5] gi|205830586|sp|B1LG84|TTCA_ECOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|170521707|gb|ACB19885.1| PP-loop family protein [Escherichia coli SMS-3-5] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|117623596|ref|YP_852509.1| C32 tRNA thiolase [Escherichia coli APEC O1] gi|205830584|sp|A1AAV5|TTCA_ECOK1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|115512720|gb|ABJ00795.1| hypothetical protein YdaO [Escherichia coli APEC O1] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|91210638|ref|YP_540624.1| C32 tRNA thiolase [Escherichia coli UTI89] gi|218558331|ref|YP_002391244.1| C32 tRNA thiolase [Escherichia coli S88] gi|237705374|ref|ZP_04535855.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp. 3_2_53FAA] gi|122423840|sp|Q1RC21|TTCA_ECOUT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254789876|sp|B7MM21|TTCA_ECO45 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91072212|gb|ABE07093.1| hypothetical protein YdaO [Escherichia coli UTI89] gi|218365100|emb|CAR02807.1| putative C32 tRNA thiolase [Escherichia coli S88] gi|226900131|gb|EEH86390.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp. 3_2_53FAA] gi|294492177|gb|ADE90933.1| PP-loop family protein [Escherichia coli IHE3034] gi|307627082|gb|ADN71386.1| C32 tRNA thiolase [Escherichia coli UM146] gi|315289077|gb|EFU48475.1| PP-loop family protein [Escherichia coli MS 110-3] gi|323949053|gb|EGB44945.1| ydaO protein [Escherichia coli H252] gi|323956905|gb|EGB52637.1| ydaO protein [Escherichia coli H263] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|26247680|ref|NP_753720.1| C32 tRNA thiolase [Escherichia coli CFT073] gi|110641578|ref|YP_669308.1| C32 tRNA thiolase [Escherichia coli 536] gi|191170922|ref|ZP_03032473.1| protein YdaO [Escherichia coli F11] gi|218689334|ref|YP_002397546.1| C32 tRNA thiolase [Escherichia coli ED1a] gi|227886219|ref|ZP_04004024.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972] gi|300971603|ref|ZP_07171514.1| PP-loop family protein [Escherichia coli MS 45-1] gi|300972036|ref|ZP_07171796.1| PP-loop family protein [Escherichia coli MS 200-1] gi|301046193|ref|ZP_07193366.1| PP-loop family protein [Escherichia coli MS 185-1] gi|331646675|ref|ZP_08347778.1| conserved hypothetical protein [Escherichia coli M605] gi|331657398|ref|ZP_08358360.1| conserved hypothetical protein [Escherichia coli TA206] gi|81476555|sp|Q8FHP6|TTCA_ECOL6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123344045|sp|Q0TI22|TTCA_ECOL5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790124|sp|B7MUI7|TTCA_ECO81 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|26108082|gb|AAN80282.1|AE016760_141 Hypothetical protein ydaO [Escherichia coli CFT073] gi|27526304|emb|CAD42727.1| YdaO protein [Escherichia coli] gi|110343170|gb|ABG69407.1| hypothetical protein YdaO [Escherichia coli 536] gi|190908654|gb|EDV68242.1| protein YdaO [Escherichia coli F11] gi|218426898|emb|CAR07753.2| putative C32 tRNA thiolase [Escherichia coli ED1a] gi|222033148|emb|CAP75888.1| UPF0021 protein ydaO [Escherichia coli LF82] gi|227836423|gb|EEJ46889.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972] gi|281178535|dbj|BAI54865.1| conserved hypothetical protein [Escherichia coli SE15] gi|300301802|gb|EFJ58187.1| PP-loop family protein [Escherichia coli MS 185-1] gi|300309258|gb|EFJ63778.1| PP-loop family protein [Escherichia coli MS 200-1] gi|300411217|gb|EFJ94755.1| PP-loop family protein [Escherichia coli MS 45-1] gi|307553406|gb|ADN46181.1| PP-loop family protein [Escherichia coli ABU 83972] gi|312945980|gb|ADR26807.1| C32 tRNA thiolase [Escherichia coli O83:H1 str. NRG 857C] gi|315295394|gb|EFU54724.1| PP-loop family protein [Escherichia coli MS 153-1] gi|315297175|gb|EFU56455.1| PP-loop family protein [Escherichia coli MS 16-3] gi|320195642|gb|EFW70267.1| C32 tRNA thiolase [Escherichia coli WV_060327] gi|323187578|gb|EFZ72887.1| PP-loop family protein [Escherichia coli RN587/1] gi|324011375|gb|EGB80594.1| PP-loop family protein [Escherichia coli MS 60-1] gi|331045427|gb|EGI17554.1| conserved hypothetical protein [Escherichia coli M605] gi|331055646|gb|EGI27655.1| conserved hypothetical protein [Escherichia coli TA206] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 +V + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|16764998|ref|NP_460613.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549859|ref|ZP_02343617.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168260142|ref|ZP_02682115.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197248499|ref|YP_002146377.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264456|ref|ZP_03164530.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|81522812|sp|Q8ZP88|TTCA_SALTY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790138|sp|B5F5C0|TTCA_SALA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|16420181|gb|AAL20572.1| putative ATPase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197212202|gb|ACH49599.1| YdaO [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242711|gb|EDY25331.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205324962|gb|EDZ12801.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205350986|gb|EDZ37617.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246846|emb|CBG24662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301158182|emb|CBW17680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912645|dbj|BAJ36619.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224280|gb|EFX49343.1| tRNACytosine32-2-thiocytidine synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129923|gb|ADX17353.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|262371972|ref|ZP_06065251.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter junii SH205] gi|262311997|gb|EEY93082.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter junii SH205] Length = 301 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 20/239 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77 ++V VSGG DS LL L + I F ++V+ + ++V Sbjct: 47 GDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGFPEDVLP--RYM 101 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I + + ++ + + A R + A+ I AT + H DD Sbjct: 102 EENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGATKVALGHHRDD 161 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T ++ + K M + D + RP +DI + R Sbjct: 162 IMATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIKYAELRKFPII- 216 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R + D+ K+ + + N + ++ Sbjct: 217 -PCNLCGS-QENLQRAIINDMLREWDKQYPKRLHSIFGALQNVSPSQLADRELFDFEAL 273 >gi|26988373|ref|NP_743798.1| C32 tRNA thiolase [Pseudomonas putida KT2440] gi|81441647|sp|Q88MD2|TTCA_PSEPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|24983126|gb|AAN67262.1|AE016353_2 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 274 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + I F ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + + +V + R + A I AT + H D Sbjct: 86 LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET ++ + A KGM D + RP C DI+++ + Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSERDIQAYSDMKAFPII 201 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ + + + + + N + S+ Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258 >gi|222478949|ref|YP_002565186.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222451851|gb|ACM56116.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 326 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 19/184 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 ++ +SGG DS+ L L V +++ A+++ + + + ++ L Sbjct: 55 RWVIGLSGGKDSVALTQILDDVFGK--DPRVEMLALTIHEGIEGYRDESIDATIELTEDL 112 Query: 81 RIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 I H VVS++ A R L+ ++A +A ++T H Sbjct: 113 SIRHEVVSYEEEFDVQMDDVVESDPENMAACAYCGVFRRDLLEKYAAEFDADKLLTGHNL 172 Query: 129 DDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD+ +T M L + D + ++P ++I + Sbjct: 173 DDEAQTAMMNFLEGDVRQVAKHFDASLGPFDERGGTDAFVPRAKPLRDVPEKEIALYCHV 232 Query: 184 RNIS 187 R++ Sbjct: 233 RDLP 236 >gi|157375358|ref|YP_001473958.1| PP-loop domain-containing protein [Shewanella sediminis HAW-EB3] gi|205830641|sp|A8FVF7|TTCA_SHESH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157317732|gb|ABV36830.1| PP-loop domain protein [Shewanella sediminis HAW-EB3] Length = 316 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 20/212 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K + A+++D + +EV L + + Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEVLPA--YLDTLNVPYH 99 Query: 86 VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 100 IIEKDTYSVVREKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195 G + + D + RP R +DI + + P N Sbjct: 160 MF----FAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKAFPII--PCNLCGS 213 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ + D H F ++ Sbjct: 214 QENLKRAEVKDMLNLWDEHHPGRIESIFTAMQ 245 >gi|320186802|gb|EFW61523.1| C32 tRNA thiolase [Shigella flexneri CDC 796-83] gi|332094958|gb|EGI99998.1| PP-loop family protein [Shigella boydii 3594-74] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGF 84 Query: 67 KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119 + V V +L + + +V K P+ + R ++ A + A Sbjct: 85 PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + P N +R + +RD D F ++ V + + Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|187732105|ref|YP_001880184.1| C32 tRNA thiolase [Shigella boydii CDC 3083-94] gi|205830633|sp|B2U0Z1|TTCA_SHIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|187429097|gb|ACD08371.1| PP-loop family protein [Shigella boydii CDC 3083-94] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGF 84 Query: 67 KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119 + V V +L + + +V K P+ + R ++ A + A Sbjct: 85 PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + P N +R + +RD D F ++ V + + Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|331083984|ref|ZP_08333091.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402346|gb|EGG81916.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium 6_1_63FAA] Length = 386 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 11/175 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DSM + + R + +D ET + + + + Sbjct: 137 GDKIAVCISGGKDSMLMAKLFQELQKHRKV-NFDVVFLVMDPGYNETNRKVIEENARL-- 193 Query: 79 RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I ++ + + + R + AK + I H +DD +ET Sbjct: 194 -LNIPITIFETNIFETVYEIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDVIET 252 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 + M + M + ++ + + RP R +DI+ + ++ + Sbjct: 253 ILMGMLYGAQIQTM--MPKLHSTNFEA-MELIRPMYLIREDDIKHWRDYNDLHFI 304 >gi|163749023|ref|ZP_02156274.1| hypothetical protein KT99_12994 [Shewanella benthica KT99] gi|161331399|gb|EDQ02287.1| hypothetical protein KT99_12994 [Shewanella benthica KT99] Length = 316 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 20/212 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K +++D + +EV + L + + Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPIKFDIVVVNLD-QKQPGFPEEVLP--NYLDTLNVPYH 99 Query: 86 VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVRSKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195 G + + D + RP R +DI + ++ P N Sbjct: 160 MF----YAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAQLKSFPII--PCNLCGS 213 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ + D+ F ++ Sbjct: 214 QENLKRASVKAMLEQWDVEHPGRIESIFTAMQ 245 >gi|330960606|gb|EGH60866.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 274 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS LL L + I+F ++V+ + Sbjct: 21 EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIRFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L + + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKALGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+D+ L ++ ++ Sbjct: 190 QAYSGLKQFPII--PCNLCGS-QENLQRQVVKDMLLD--------WERKTPGRTESIFRA 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + L ID T + V Sbjct: 239 LQNVQPSQLADRKLFDFSNLRIDETAASRFVNV 271 >gi|91789928|ref|YP_550880.1| C32 tRNA thiolase [Polaromonas sp. JS666] gi|123059391|sp|Q124R0|TTCA_POLSJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91699153|gb|ABE45982.1| tRNA s(2)C-32 sulfurtransferase [Polaromonas sp. JS666] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 17/179 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V VSGG DS +L L + R+ + A+++D + ++V D Sbjct: 50 GDKVMVCVSGGKDSYAMLDILLKLQK-RAPIRFDLIAVNLD-QKQPG---FPKHVLPDYL 104 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + + + L + R ++ A + AT I H DD Sbjct: 105 GKLDVPFHIENQDTYSIVKRVIPEGKTLCSLCSRLRRGILYRVAGELGATKIALGHHRDD 164 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 L+T ++ KGM + D + RP +D+ + R+ Sbjct: 165 MLQTFFLNMFFAAKLKGM----PPKLVSDDGKNIVIRPMAYVPEKDLTRWAQVRDFPII 219 >gi|320174310|gb|EFW49465.1| C32 tRNA thiolase [Shigella dysenteriae CDC 74-1112] Length = 311 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILLNLQQSAPI-NFSLVAVNLD-QKQPGF 84 Query: 67 KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119 + V V +L + + +V K P+ + R ++ A + A Sbjct: 85 PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 T I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198 Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 F + P N +R + +RD D F ++ V + + Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256 Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|221064982|ref|ZP_03541087.1| PP-loop domain protein [Comamonas testosteroni KF-1] gi|220710005|gb|EED65373.1| PP-loop domain protein [Comamonas testosteroni KF-1] Length = 327 Score = 86.5 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + R+ K A+++D + +V + Sbjct: 66 GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 120 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + R A++ + A + T + H DD Sbjct: 121 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 180 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM + D + RP +D + +N Sbjct: 181 IVQTMMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTTRWAQYQNFPII- 235 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N D +RV V +R+ D F+ + V + Sbjct: 236 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 294 Query: 248 SIIAISQDILNIDSTLL 264 + IA + D L Sbjct: 295 TGIADPNGDMAFDHEEL 311 >gi|16760232|ref|NP_455849.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141999|ref|NP_805341.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053470|ref|ZP_03346348.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416969|ref|ZP_03350113.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213614398|ref|ZP_03371224.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289823675|ref|ZP_06543287.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|81514744|sp|Q8Z783|TTCA_SALTI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|25305888|pir||AC0663 conserved hypothetical protein STY1412 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502527|emb|CAD01676.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137628|gb|AAO69190.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 311 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 I L D + Sbjct: 256 DTNLFDFKGITHGSEVIDGGDLAFDREEI 284 >gi|194433858|ref|ZP_03066132.1| protein YdaO [Shigella dysenteriae 1012] gi|194417961|gb|EDX34056.1| protein YdaO [Shigella dysenteriae 1012] gi|332098106|gb|EGJ03079.1| PP-loop family protein [Shigella dysenteriae 155-74] Length = 311 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI+ Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 ++ L D + Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284 >gi|87045850|gb|ABD17746.1| putative GMP synthase [Methanococcus voltae PS] Length = 318 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 22/203 (10%) Query: 8 SVRFFVRSLVYPAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 VR + + HI V +SGG DS+ + L+ + K I V+ + Sbjct: 43 KVRKNLGKNILKNHITIGVGISGGKDSLVMAHILNEFFNQ--IPNSKIVGIMVNEGIEGF 100 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAAREARYALI 110 D + C I + +V++ K + R ++ Sbjct: 101 RNDGIEKGIKFCEEYGIEYHIVTFSEYIDSDLDSIVAIAKEKNMTMNPCSFCGVIRRKIL 160 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + A + H DD + V M +K L+ + + D + +P Sbjct: 161 NRVAIEKGCDYLAIGHNLDDISQAVMMNYIEGDIKK---LAILGKSSQSDKFVKRIKPLS 217 Query: 171 RCRREDIRSFLLQRNISWCEDPS 193 + E+++ F + + ++P Sbjct: 218 KIPEEEVKLFADILEMDYHKEPC 240 >gi|291612641|ref|YP_003522798.1| PP-loop domain protein [Sideroxydans lithotrophicus ES-1] gi|291582753|gb|ADE10411.1| PP-loop domain protein [Sideroxydans lithotrophicus ES-1] Length = 284 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 96/250 (38%), Gaps = 21/250 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V +SGG DS LL L ++ R+ K A+++D + +V Y+ + Sbjct: 44 VMVCLSGGKDSYTLLDILRTLQK-RAPVDFKLIAMNLD-QKQPGFPADVLPNYLKSIGVD 101 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +S+V K + +T + R +I + A + A I H DD +ET+ Sbjct: 102 FHIETQDTYSIVKEKIPEGKT-TCSLCSRLRRGIIYKVAGELGANKIALGHHRDDMVETL 160 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ G L M ++ D I RP C +DI + P N Sbjct: 161 FLNMF-----FGGKLKAMPPKLVTDKGDHIVIRPLAYCAEKDIARYARGMEFPII--PCN 213 Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSII 250 + +R +++ + + + F ++ VK ++ + + + + + + + Sbjct: 214 LCGSQENLQRQNIKQMLHEWERQYPGRSQTIFTAMQNVKPSHLLDTSLFDFRNIQLGAAV 273 Query: 251 AISQDILNID 260 + + Sbjct: 274 DEGDVAFDQE 283 >gi|83950480|ref|ZP_00959213.1| ATPase of the PP superfamily protein [Roseovarius nubinhibens ISM] gi|83838379|gb|EAP77675.1| ATPase of the PP superfamily protein [Roseovarius nubinhibens ISM] Length = 295 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R ++ A ++D + + Sbjct: 50 RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVEILACNLD---QGQPGFPATVLPKFL 105 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + H + V A R + A+ + ++ H DD Sbjct: 106 EDMGVPHRIEYQDTYSVVMDKVPEGRTFCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 165 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + +L++ RP ED F Sbjct: 166 MLETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAFVAEEDCEKFSRAMQ 216 >gi|163733764|ref|ZP_02141206.1| hypothetical protein RLO149_05613 [Roseobacter litoralis Och 149] gi|161392875|gb|EDQ17202.1| hypothetical protein RLO149_05613 [Roseobacter litoralis Och 149] Length = 274 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 15/163 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL L+ + R ++ A ++D + + Sbjct: 44 KGAKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPAFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + H V + L A R + A+ + ++ H DD Sbjct: 100 EKMGVPHRVEYQDTYSIVMDKVPEGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 LET M G + + + +L++ RP Sbjct: 160 ILETFLMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVS 198 >gi|266622461|ref|ZP_06115396.1| PP-loop family protein [Clostridium hathewayi DSM 13479] gi|288865817|gb|EFC98115.1| PP-loop family protein [Clostridium hathewayi DSM 13479] Length = 307 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 11/179 (6%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + +I V +SGG DSM L + +L K + +D + + + Sbjct: 35 KMIEEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMKFGLHFLVMDPGYHPANR---KLI 90 Query: 74 SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + I + R + HAK + I H FD Sbjct: 91 EENAALMEIPIEIFESDIFDVVVDVDESPCYLCARMRRGFLYAHAKELGCNKIALGHHFD 150 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 D +ETV M M + ++ + + RP + I + + + + Sbjct: 151 DVIETVLMSMLYGGQVNTM--MPKLHSTNFE-GMELLRPLYFVKERAIIDWKEENGLQF 206 >gi|325114092|emb|CBZ49650.1| conserved putative aminotransferase class V domain-containing protein [Neospora caninum Liverpool] Length = 1778 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 25/196 (12%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HC 61 E++R F + +LV +SGG DS+ LL L + R+ +A +VD Sbjct: 1416 EAIRSF-DMIREGDRLLVGISGGKDSLTLLHVLRDLQR-RAPVSFSLAAATVDPVTPEFN 1473 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAK 115 R + L I + + K + + A + L+ + Sbjct: 1474 PRP--------LIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMR 1525 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 +++ DD E+ M + + M + D +L I RP + R Sbjct: 1526 KHGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTRER 1581 Query: 176 DIRSFLLQRNISWCED 191 + F + D Sbjct: 1582 ETAQFAGTHRLPVIAD 1597 >gi|238758667|ref|ZP_04619842.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia aldovae ATCC 35236] gi|238703178|gb|EEP95720.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia aldovae ATCC 35236] Length = 314 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ A+++D + +++ + Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLN 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYQIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F L + Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFALAKEYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SQIVDGGDLAFDREEL 284 >gi|296137275|ref|YP_003644517.1| PP-loop domain protein [Thiomonas intermedia K12] gi|295797397|gb|ADG32187.1| PP-loop domain protein [Thiomonas intermedia K12] Length = 334 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 15/177 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ +R+ A+++D + EV D Sbjct: 73 QGDKVMVCMSGGKDSYALLDILLSL-RERAPIDFDLVAVNLD-QKQPGFPQEVLP--DYL 128 Query: 78 SRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + R ++ A + AT I H DD Sbjct: 129 KSRGVPFHIEEQDTYSIVKSIIPEGKTTCGLCSRLRRGILYRVAGELGATKIALGHHRDD 188 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 LET ++ KGM + D + RP D+ + R Sbjct: 189 ILETFFLNLFFGGTLKGM----PPKLVSDDGKHVVIRPLAYVEETDLERWAELRAFP 241 >gi|253989444|ref|YP_003040800.1| C32 tRNA thiolase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780894|emb|CAQ84056.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 297 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L ++ +KF ++V+ L + ++ Sbjct: 32 NMIEENDVVMACISGGKDSFAMLDILLNLQK---VAPVKFKVVAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTA 125 L I + +V K P+ R + A+ I AT I Sbjct: 87 LPQYFESLDIPYYIVDKDTFSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHLDDIVETLFLNMFHGSRMKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYSEYKE 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|294624762|ref|ZP_06703426.1| PP-loop family ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600943|gb|EFF45016.1| PP-loop family ATPase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 306 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 77/245 (31%), Gaps = 22/245 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 48 IAPGDKIMVCLSGGKDSYTLLDMLLRLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + VV + + R + +A+T T I H Sbjct: 103 AYLRGLGVPFDVVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N + R+ V + + + + + + + + Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRTLFDF 274 Query: 247 RSIIA 251 ++ Sbjct: 275 LALGR 279 >gi|289666219|ref|ZP_06487800.1| PP-loop family ATPase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 22/248 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + I+V +SGG DS LL L + + F+ ++V+ L + D + Sbjct: 45 FSMIAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAH 99 Query: 73 VS-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMT 124 V L + +V + + R + +A+T T I Sbjct: 100 VLPAYLRGLGVPFDIVEQDTYSVVSRLIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIAL 159 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD + T +M L+ M + D + RP R DI ++ Sbjct: 160 GHHRDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQA 214 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R P N + R+ V + + + + + + + + + Sbjct: 215 RQFPII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRML 271 Query: 244 VHMRSIIA 251 ++ Sbjct: 272 FDFLALGR 279 >gi|168241213|ref|ZP_02666145.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194447955|ref|YP_002045696.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|254790142|sp|B4TIS7|TTCA_SALHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|194406259|gb|ACF66478.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339158|gb|EDZ25922.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 311 Score = 86.5 bits (213), Expect = 8e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|53803008|ref|YP_115273.1| hypothetical protein MCA2880 [Methylococcus capsulatus str. Bath] gi|81680839|sp|Q603C7|TTCA_METCA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|53756769|gb|AAU91060.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 289 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 62/188 (32%), Gaps = 19/188 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L + + A+++D + +V + Sbjct: 38 IQEGDRVMVCLSGGKDSFTLLDILLKLRINAPV-NFDLVAVNLD-QKQPGFPADVLP--N 93 Query: 76 VCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTF 128 S I ++ + R L+ +A T I H Sbjct: 94 YLSEQGIPFHIIEQDTYSVVKSIIPEGKTTCGLCSRLRRGLLYRYAADHGITKIALGHHR 153 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD LET ++ G L M +L D I RP C+ EDI + R Sbjct: 154 DDILETFFLNLF-----YGGTLKAMPPKLLSDDRRHIVIRPLAYCKEEDIARYARIRAFP 208 Query: 188 WCEDPSNT 195 P N Sbjct: 209 II--PCNL 214 >gi|146281659|ref|YP_001171812.1| hypothetical protein PST_1276 [Pseudomonas stutzeri A1501] gi|205830617|sp|A4VJ19|TTCA_PSEU5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145569864|gb|ABP78970.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] gi|327479906|gb|AEA83216.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 274 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 35/258 (13%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------- 59 E+V F + ++V +SGG DS +L L + I+F ++V+ Sbjct: 21 EAVTDF-NMIEDGDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIRFEVVAVNMDQKQPG 76 Query: 60 ---HCLRETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE 112 H L Y+ + I +SVV K + +T + R + Sbjct: 77 FPEHVL-------PEYLKSIGVEYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYT 128 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLR 171 A I AT + H DD LET ++ G L M +L D + RP Sbjct: 129 FADEIGATKMALGHHRDDILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAY 183 Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 C DI ++ + P N + R+ V+++ + + + + Sbjct: 184 CSEADIEAYSKMKEFPII--PCNLCGS-QENLQRQVVKEMLQEWERKSPGRTEIMFRALQ 240 Query: 232 NAVAMLIPKYLTVHMRSI 249 N V + +S+ Sbjct: 241 NVVPSQLADRNLFDFKSL 258 >gi|323483399|ref|ZP_08088787.1| hypothetical protein HMPREF9474_00536 [Clostridium symbiosum WAL-14163] gi|323691102|ref|ZP_08105382.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] gi|323403253|gb|EGA95563.1| hypothetical protein HMPREF9474_00536 [Clostridium symbiosum WAL-14163] gi|323504799|gb|EGB20581.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673] Length = 303 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 10 RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FV++L +I V +SGG DSM L + +L + + +D Sbjct: 48 RPFVKALNEYDMIKEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 106 Query: 64 ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + R + + + I ++ + R + +AK + Sbjct: 107 PANR---RMIEENAKTMNIPVTIFDSDIFDVVVDVDQSPCYLCARMRRGFLYANAKKLGC 163 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H FDD +ET+ M M + ++ + + RP + DI + Sbjct: 164 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADILA 220 Query: 180 FLLQRNISW 188 + + + Sbjct: 221 WKDYNGLRF 229 >gi|168230078|ref|ZP_02655136.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471984|ref|ZP_03077968.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458348|gb|EDX47187.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335366|gb|EDZ22130.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 311 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|238792248|ref|ZP_04635883.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia intermedia ATCC 29909] gi|238728485|gb|EEQ20004.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia intermedia ATCC 29909] Length = 297 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 20/190 (10%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 +++ +++A SGG DS +L L + IKF I+V+ L + ++ Sbjct: 32 NMIEDNDVVMACMSGGKDSFAMLDILLGLQK---VAPIKFEVIAVN--LDQKQPGFPEHI 86 Query: 74 S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125 L I + +V R + A+ I AT I Sbjct: 87 LPAYLESLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD +ET+++ K M D + RP CR +D+ + + Sbjct: 147 HHMDDIVETLFLNIFHGARMKAM----PPKLRSDDGRNIVIRPLAYCREKDLIKYSEYKT 202 Query: 186 ISWCEDPSNT 195 P N Sbjct: 203 FPII--PCNL 210 >gi|294667509|ref|ZP_06732725.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602738|gb|EFF46173.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 306 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 77/243 (31%), Gaps = 22/243 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 48 IAPGDKIMVCLSGGKDSYTLLDMLLRLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+T T I H Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N + R+ V + + + + + + + + Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQQWNREQPGRVEQIARALGDVRPEQLADRTLFDF 274 Query: 247 RSI 249 ++ Sbjct: 275 LAL 277 >gi|304439167|ref|ZP_07399085.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372299|gb|EFM25887.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 276 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 12/175 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I VA+SGG DS+ L + + F I++D ++ D++ Y C Sbjct: 40 KGDKIAVAISGGKDSLTLAKLFQELKKHKKF-DFDLEFIAMDPGYKKEKLDQMLYN---C 95 Query: 78 SRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L I V R + A+ + + H FDD + Sbjct: 96 EKLGIPVKVHQSDIFEVSERIAGENPCYMCARMRRGNLYAKAQELGCNKLALGHHFDDVI 155 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 ETV + +A + ++ N+ + RP E I F+ ++ Sbjct: 156 ETVMLNII--FAGDFKTMMPKLKAQNFE-NMELIRPMYLIEEESIIRFMKSTGLT 207 >gi|52840935|ref|YP_094734.1| C32 tRNA thiolase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81378004|sp|Q5ZXN3|TTCA_LEGPH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|52628046|gb|AAU26787.1| hypothetical protein lpg0698 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 283 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 26 IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I H +++ + R +I +A+ I H Sbjct: 82 WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 142 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220 >gi|319940761|ref|ZP_08015101.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Sutterella wadsworthensis 3_1_45B] gi|319805781|gb|EFW02557.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Sutterella wadsworthensis 3_1_45B] Length = 311 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 17/175 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+VA+SGG DS LL L +L R+ A++V + E + Sbjct: 67 GDKIMVAMSGGKDSYVLLDTLK-ILQARAPIHFDLLAVNVHQHI-PEFPLEA--LKKHLE 122 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + + + + R ++ A+ I H DD Sbjct: 123 HSGIPFHIEDQDTNSLIQKLIPEGKNVCSLCARLRRGILYRVARETGCNRIALGHHMDDI 182 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185 + T+ + G L M + D + RP R + R Sbjct: 183 VSTLLLNLF-----YGGRLKSMPPALKNDRGDCVVIRPLAYVREAETAKMAKIRG 232 >gi|91774584|ref|YP_544340.1| PP-loop [Methylobacillus flagellatus KT] gi|123254878|sp|Q1H4T8|TTCA_METFK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91708571|gb|ABE48499.1| PP-loop [Methylobacillus flagellatus KT] Length = 303 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 19/245 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ILV +SGG DS +L+ L ++ +R+ K A+++D ++ + +L Sbjct: 40 ILVCMSGGKDSYTMLMMLLALQ-ERAPVNFKLIAMNLD---QKQPGFPAHILPAYLEQLG 95 Query: 82 IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 + H +V + R +I A+ + A I H DD +ET Sbjct: 96 VDHRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYRTAQELGANKIALGHHRDDIVET 155 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 +++ G + M + + + RP C +DI S+ + D Sbjct: 156 LFLNMF-----FGAKMKAMPPKLATNKGEFHVIRPLAYCAEKDIASYARGMDFPIIPCDL 210 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + + +R +V+ ++ + F+ + + +A Y HM A Sbjct: 211 CGSQENLQRQKVKDMLQAWEREQPGRVNNIFRAICNVEPSHLADT-DLYDFKHMSQSKAE 269 Query: 253 SQDIL 257 +D L Sbjct: 270 DEDPL 274 >gi|15596389|ref|NP_249883.1| hypothetical protein PA1192 [Pseudomonas aeruginosa PAO1] gi|107100641|ref|ZP_01364559.1| hypothetical protein PaerPA_01001667 [Pseudomonas aeruginosa PACS2] gi|116049140|ref|YP_792058.1| ATPase [Pseudomonas aeruginosa UCBPP-PA14] gi|218892831|ref|YP_002441700.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa LESB58] gi|254234325|ref|ZP_04927648.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|313106167|ref|ZP_07792420.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa 39016] gi|81541550|sp|Q9I4E6|TTCA_PSEAE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|122258248|sp|Q02J28|TTCA_PSEAB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790134|sp|B7UWY4|TTCA_PSEA8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|9947118|gb|AAG04581.1|AE004549_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115584361|gb|ABJ10376.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa UCBPP-PA14] gi|126166256|gb|EAZ51767.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|218773059|emb|CAW28871.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa LESB58] gi|310878922|gb|EFQ37516.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa 39016] Length = 274 Score = 86.1 bits (212), Expect = 9e-15, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L + I+F ++V+ H L Sbjct: 32 GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82 Query: 69 EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + I +SVV K + +T + R + A I AT + Sbjct: 83 -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD LET ++ G L M +L D + RP C +DI ++ Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + P N + R+ V+++ L + + + + N V + Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252 Query: 244 VHMRSI 249 ++ Sbjct: 253 FDFANL 258 >gi|330834210|ref|YP_004408938.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566349|gb|AEB94454.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] Length = 316 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 27/244 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72 ++L+ IL+AVSGG DS+ L L +++ + A ++ ++ +D+VR Sbjct: 42 QNLLNANKILIAVSGGKDSLVLADTLSKIVNPN-----RIVAFNIVEGIKGYNREDQVRE 96 Query: 73 VSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAARE----ARYALISEHAKTI 117 +S+ L I S++ S Q GL AA R LI+ + + Sbjct: 97 LSNYLKELGIDLISTSFEKSVGYTLDQMVKSSSQRGLNVAACTFCGGFRRKLINGAGREV 156 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 NA + T H DD+++T+ + R +K + + G L + + +P + + Sbjct: 157 NADFVSTGHNLDDEVQTIIINLLRGDVKKLLRI-GDSQPKLSEKFVMRVKPLRKVYEWET 215 Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRF---VRDIDLHALYLKMKKFQDLRVKVNN 232 + + + E R +VR + + AL ++ F L + Sbjct: 216 TMYAYFKGFHFQEVECPYISAKPTMRAKVRDLLYALEERSPGALLQILENFDSLAESIRK 275 Query: 233 AVAM 236 + Sbjct: 276 GTKL 279 >gi|221134474|ref|ZP_03560779.1| ATPase of the PP-loop superfamily protein [Glaciecola sp. HTCC2999] Length = 288 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 24/226 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L + I F+ +V+ ++ + + + Sbjct: 27 GDRVMVCLSGGKDSYTMLDNLLYLQ---QVAPINFAIFAVN-LDQKQPGFPAHILPEYLT 82 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + I H +V+ A R A++ AK AT I H DD Sbjct: 83 QRDIEHYIVTEDTYSIVKEKTPEGKTTCALCSRLRRAILYRTAKEYGATKIALGHHRDDM 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 LET+ + G L M ++ D + RP C DI + + Sbjct: 143 LETLLLNMF-----HGGQLKSMPPKLVSDNGEHVVIRPLAFCAESDIAQYSQIQQYPII- 196 Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAV 234 P N + R+ ++ + D H + + + + V Sbjct: 197 -PCNLCGS-QENLQRKQIKMMLQDWHERFPT--RIASMAKSLQQVV 238 >gi|317062669|ref|ZP_07927154.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185] gi|313688345|gb|EFS25180.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185] Length = 292 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ F +L+ I V VSGG DS+ L + DRS + + IS++ Sbjct: 47 KFVKAVKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 103 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117 A D ++ L I V + + R ++ + + Sbjct: 104 --GAMDMEQF-KSNLEELEIPCEVFEANVWEIAFKENPESPCFLCAKMRRGVLYNKVEEL 160 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + + + RP + + +DI Sbjct: 161 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 216 Query: 178 RSFLLQRNIS 187 ++ + I Sbjct: 217 IAYTQRNEIE 226 >gi|257468396|ref|ZP_05632490.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185] Length = 267 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ F +L+ I V VSGG DS+ L + DRS + + IS++ Sbjct: 22 KFVKAVKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117 A D ++ L I V + + R ++ + + Sbjct: 79 --GAMDMEQF-KSNLEELEIPCEVFEANVWEIAFKENPESPCFLCAKMRRGVLYNKVEEL 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + + + RP + + +DI Sbjct: 136 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 191 Query: 178 RSFLLQRNIS 187 ++ + I Sbjct: 192 IAYTQRNEIE 201 >gi|281203415|gb|EFA77615.1| hypothetical protein PPL_12222 [Polysphondylium pallidum PN500] Length = 636 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 55/375 (14%), Positives = 114/375 (30%), Gaps = 112/375 (29%) Query: 22 ILVAVSGGSDS---------------------MGLLIALHSVLSDRSFGKIKFSAISVDH 60 I+ AVSGG+DS M L L + I A+++DH Sbjct: 157 IIAAVSGGADSICNLSYLMNYCYFYRNDVVYSMALCFLLKGWCNRHG---ISLVAVTIDH 213 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 L ++D V ++ ++ + K +G+ Sbjct: 214 GLVPPSEDIVAIAENI-RKIDADIQHIVVKIDWFGSGVE--------------------- 251 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 GL+GM T+ N I RP L ++++ Sbjct: 252 ----------------------------GLAGMQPTLPLA-NASIYRPLLNIGKDELFGL 282 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI----------------------------- 211 N+ + D +N FER R+R + + Sbjct: 283 CNAYNLRYTHDQANNLTTFERNRIRLALSKLLCSSSGNSGQQHDHSNNNSSNNSSPSIVQ 342 Query: 212 --DLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268 D + + ++F+ + +V +V L ++ + I + + + LL Sbjct: 343 LKDFNNVLSIFREFRYSIEEQVMASVRELYNSSFSLELPMFRVDVDRIKKLSAPIGCRLL 402 Query: 269 RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA---VRNL 325 + I G ++ + + SG+ ++ +++ + N ++I Sbjct: 403 YQLSMIINGDYEKFRHQDYASLYRSVVSGQ--TRTLNQIIFYTQQNHIYIHPESHSSAKQ 460 Query: 326 PTLILYPEETTVWDG 340 I+ ++ + DG Sbjct: 461 AKRIVIEQQRHLRDG 475 >gi|168462890|ref|ZP_02696821.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443213|ref|YP_002040903.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198242873|ref|YP_002215492.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352663|ref|YP_002226464.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856831|ref|YP_002243482.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|254790139|sp|B5FUP1|TTCA_SALDC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790140|sp|B5R4D8|TTCA_SALEP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790141|sp|B5RA25|TTCA_SALG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790143|sp|B4T6P5|TTCA_SALNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|16611693|gb|AAL27304.1|AF370716_7 YdaO [Salmonella enterica subsp. enterica serovar Enteritidis] gi|194401876|gb|ACF62098.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195633936|gb|EDX52288.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197937389|gb|ACH74722.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272444|emb|CAR37331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708634|emb|CAR32956.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326623238|gb|EGE29583.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326627729|gb|EGE34072.1| YdaO [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 311 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|52425142|ref|YP_088279.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] gi|81387134|sp|Q65TL6|TTCA_MANSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|52307194|gb|AAU37694.1| MesJ protein [Mannheimia succiniciproducens MBEL55E] Length = 312 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ + A+++D + ++ + Sbjct: 40 GDKVMVCLSGGKDSYTLLDILLNLRHNAPV-HFDIVAVNLD-QKQPG---FPEHILPEYL 94 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 S + + + +V K P+ + R ++ A + AT I H DD Sbjct: 95 SSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 154 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K S + D + RP C+ +DI + + + Sbjct: 155 MLETLFLNMFYGGKLK----SMPPKLVSDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 209 Query: 191 DPSNT 195 P N Sbjct: 210 -PCNL 213 >gi|149920545|ref|ZP_01909012.1| ATPase [Plesiocystis pacifica SIR-1] gi|149818589|gb|EDM78035.1| ATPase [Plesiocystis pacifica SIR-1] Length = 310 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 12/231 (5%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L + + + I+VA+SGG DS LL L + F + A+++D Sbjct: 27 LLRQMSRLNRRFDLIAPDDTIMVAISGGKDSWALLHLLRAYKRVVPF-DYELVAVNLD-Q 84 Query: 62 LRETAKDEV--RYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116 EV ++ R+ H V N+K + R ++ + A Sbjct: 85 GHPGFPVEVLRAHLEAEGFAYRLVHRDTHSVVKANTKAGKAYCSLCSRLRRGILYDVAVE 144 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + AT I H DD +ET+ + G + D I RP C D Sbjct: 145 LGATKIALGHHRDDVVETLMLNLF----YAGQLKAMPPKLRSDDGRNVIIRPLGTCAEAD 200 Query: 177 IRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 I + N D + +R +++ + ++ L+ + Sbjct: 201 IARYAALANFPIVPCDLCGSQPNLKRQQMKALLTQLEGDNPLLRKNMLAAV 251 >gi|148360650|ref|YP_001251857.1| hypothetical protein LPC_2596 [Legionella pneumophila str. Corby] gi|205830599|sp|A5IGL1|TTCA_LEGPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|148282423|gb|ABQ56511.1| hypothetical protein LPC_2596 [Legionella pneumophila str. Corby] Length = 283 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 20/205 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 28 HGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQWL 83 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + I H +++ + R +I +A+ I H DD Sbjct: 84 AEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHRDD 143 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 144 LIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFPII 198 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 199 --PCNLCGS-QENLMRKKVASLIDQ 220 >gi|225386687|ref|ZP_03756451.1| hypothetical protein CLOSTASPAR_00435 [Clostridium asparagiforme DSM 15981] gi|225047214|gb|EEG57460.1| hypothetical protein CLOSTASPAR_00435 [Clostridium asparagiforme DSM 15981] Length = 289 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 17/189 (8%) Query: 10 RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 R FV+ L I V +SGG DSM LL L S + I +D Sbjct: 23 RPFVKGLQAYEMIADGDRIAVCISGGKDSM-LLAKCMQELKRHSKTNFELEFIVMDPGYN 81 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119 + R + + + + I + R + + A+++ Sbjct: 82 PANR---RLIEENAALMNIPVQIFESDIFDAVVDVDQSPCYLCARMRRGYLYDRARSLGC 138 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 I H +DD +ET+ M M + + T + + RP + DI Sbjct: 139 NKIALGHHYDDVIETILMSMLYGGQVNTM-MPKLHSTNFP--GMELIRPLYFVKEGDILD 195 Query: 180 FLLQRNISW 188 + + + Sbjct: 196 WKDYNGLHF 204 >gi|296390437|ref|ZP_06879912.1| putative ATPase of the PP-loop superfamily protein [Pseudomonas aeruginosa PAb1] Length = 274 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 24/241 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + I+F ++V+ + +V + Sbjct: 32 GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPG---FPEHVLPEY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + +V + R + A I AT + H D Sbjct: 86 LKSIGVEYHIVEKDTYSMVKEKIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D LET ++ G L M +L D + RP C +DI ++ + Sbjct: 146 DILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQLKEFPI 200 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + R+ V+++ L + + + + N V + + Sbjct: 201 I--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLFDFAN 257 Query: 249 I 249 + Sbjct: 258 L 258 >gi|164686251|ref|ZP_02210281.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM 16795] gi|164601853|gb|EDQ95318.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM 16795] Length = 287 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---- 59 I++++ + + + I VA+SGG DS L+ + G++KF + + Sbjct: 39 KFIKAIKDY-KLVEEGDKIAVAISGGKDS---LLMAKMFQELQKHGQVKFDLVFLAMDPG 94 Query: 60 -H-CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-----AAREARYALISE 112 H +R + + + C L I ++ + R + Sbjct: 95 YHKNIR-------QLLEENCEYLNIPLTIFDTNIFDVAGEIAEDYPCYMCARMRRGALYN 147 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + + H FDD +ET + L + + + I RP Sbjct: 148 KAEELGCNKLALGHHFDDVIETTMLNLL-CAGNFKTMLPKLKSSNYEKMQ--IIRPLYYI 204 Query: 173 RREDIRSFLLQRNI 186 R E I F+ I Sbjct: 205 REESIIRFIQNSGI 218 >gi|123442369|ref|YP_001006348.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205830671|sp|A1JND8|TTCA_YERE8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|122089330|emb|CAL12178.1| conserved hypothetical protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 313 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ A+++D + +++ Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAREYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SEIVDGGDLAFDREEL 284 >gi|54293682|ref|YP_126097.1| hypothetical protein lpl0735 [Legionella pneumophila str. Lens] gi|81369111|sp|Q5WYK1|TTCA_LEGPL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|53753514|emb|CAH14969.1| hypothetical protein lpl0735 [Legionella pneumophila str. Lens] Length = 283 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 26 IQRGDKVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I H +++ + R +I +A+ I H Sbjct: 82 WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 142 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220 >gi|262042928|ref|ZP_06016073.1| PP-loop family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039768|gb|EEW40894.1| PP-loop family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 326 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 87/267 (32%), Gaps = 23/267 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 43 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 98 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 ++ +L + + +V + R ++ A + Sbjct: 99 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 156 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 157 ATKIALGHHRDDILQTLFLNIFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 212 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 213 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 270 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262 + + L D Sbjct: 271 DVNLFDFKGITHGSEVVDGGDLAFDRE 297 >gi|238917758|ref|YP_002931275.1| hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750] gi|238873118|gb|ACR72828.1| Hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750] Length = 412 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 41/209 (19%) Query: 2 FLSPIESVRFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55 F PI R F ++L I V +SGG DSM + + + GK F Sbjct: 132 FRKPI--WRKFTQALNEYDLIQDGDKIAVCISGGKDSMLMAKLFQEL---KRHGKNNFEL 186 Query: 56 I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102 + ++++ + + + L I +V + + + Sbjct: 187 VFLVMNPGYNNINYQV----------ILNNAKILDIPITVFKSEIFDTVADIEESPCYLC 236 Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--D 160 R + AK + I H +DD +ET+ M G + M + Sbjct: 237 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGML-----YGAQIQTMMPKLHSTNF 291 Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC 189 + + RP R DI + N+++ Sbjct: 292 EGMELIRPLYLIREADIIHWRDYNNLAFI 320 >gi|307609493|emb|CBW98990.1| hypothetical protein LPW_07751 [Legionella pneumophila 130b] Length = 283 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 26 IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I H +++ + R +I +A+ I H Sbjct: 82 WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 142 DDLIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220 >gi|189236796|ref|XP_969974.2| PREDICTED: similar to Y71H2B.5 [Tribolium castaneum] gi|270006241|gb|EFA02689.1| hypothetical protein TcasGA2_TC008410 [Tribolium castaneum] Length = 1280 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 102/256 (39%), Gaps = 25/256 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLR 63 +E+++ F + +++V +SGG DS+ LL L + I A++VD Sbjct: 1013 MEAIQEF-EMIKDGDNVMVCLSGGKDSLSLLHTLLQFQNYAQNKGILFSLGAVTVD---P 1068 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARYAL--------ISEH 113 +T+ + + L + H ++ K S P A+E Y+ + Sbjct: 1069 DTSGCDPCILIPHLRSLGV-HYIIDDKKSDPGDESEQREEAKENLYSFCTSSVRRRLYSA 1127 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK+ ++ DD E ++ + + + D L + RPF+ R Sbjct: 1128 AKSSGYNVLAIGQHLDDLCENFFLSVFHTGRLR----TMRAHYYIKDHKLRVIRPFVYVR 1183 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 + +R F+ +N+ + D ER R+++ + ++ L+ K+ F LR ++ Sbjct: 1184 EKYLRQFVSNQNLPVSANVCGPDLTKERQRIKQVLTQQEI--LFPKL--FTSLRSALHPL 1239 Query: 234 VAMLIPKYLTVHMRSI 249 + I + + R + Sbjct: 1240 IGFQIKECEVKYRRRL 1255 >gi|54296722|ref|YP_123091.1| C32 tRNA thiolase [Legionella pneumophila str. Paris] gi|81371023|sp|Q5X752|TTCA_LEGPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|53750507|emb|CAH11901.1| hypothetical protein lpp0753 [Legionella pneumophila str. Paris] Length = 283 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 26 IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + I H +++ + R +I +A+ I H Sbjct: 82 WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 142 DDLIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220 >gi|294341575|emb|CAZ89992.1| Putative N-TYPE ATP PYROPHOSPHATASE ydaO [Thiomonas sp. 3As] Length = 334 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 15/177 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L S+ +R+ A+++D + EV D Sbjct: 73 QGDKVMVCMSGGKDSYALLDILLSL-RERAPIDFDLVAVNLD-QKQPGFPQEVLP--DYL 128 Query: 78 SRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + R ++ A + AT I H DD Sbjct: 129 KSRGVPFHIEEQDTYSIVKSIIPEGKTTCGLCSRLRRGILYRVAGELGATKIALGHHRDD 188 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 LET ++ KGM + D + RP D+ + R Sbjct: 189 ILETFFLNLFFGGKLKGM----PPKLVSDDGKHVVIRPLAYVEETDLERWAELRAFP 241 >gi|294668241|ref|ZP_06733348.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309949|gb|EFE51192.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 137 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L + HI A+SGG DS+ LL L + IK +A+ V H L++ A + + D Sbjct: 16 LSHARHIEAALSGGLDSVVLLHLLSRLA---GRLNIKLTAVHVHHGLQDEADGWLEFCRD 72 Query: 76 VCSRLRIAHS 85 C+RL + Sbjct: 73 YCARLAVPLR 82 >gi|149203004|ref|ZP_01879975.1| PP-loop [Roseovarius sp. TM1035] gi|149143550|gb|EDM31586.1| PP-loop [Roseovarius sp. TM1035] Length = 289 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 15/177 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + LV +SGG DS LL L+ + R ++ A ++D + + D Sbjct: 42 IAPGGKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPD 97 Query: 76 VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 SR+++ H + + A R + A+ T ++ H Sbjct: 98 FLSRMQVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCTAVVLGHHR 157 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD LET +M G + + + +L++ RP ED F N Sbjct: 158 DDILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEEDCERFARAMN 210 >gi|296106286|ref|YP_003617986.1| hypothetical protein lpa_01086 [Legionella pneumophila 2300/99 Alcoy] gi|295648187|gb|ADG24034.1| hypothetical protein lpa_01086 [Legionella pneumophila 2300/99 Alcoy] Length = 283 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 20/205 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L+ + +S K + A ++D + + Sbjct: 28 RGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQWL 83 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + I H +++ + R +I +A+ I H DD Sbjct: 84 AEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHRDD 143 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 + T+ M + + M +L D I RP + +DI +F ++ Sbjct: 144 LIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFPII 198 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH 214 P N + +R+ V + Sbjct: 199 --PCNLCGS-QENLMRKKVASLIDQ 220 >gi|161503260|ref|YP_001570372.1| C32 tRNA thiolase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|205830622|sp|A9MQT5|TTCA_SALAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|160864607|gb|ABX21230.1| hypothetical protein SARI_01329 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 311 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQDIVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGIAHGSEVVDGGDLAFDREEI 284 >gi|295100762|emb|CBK98307.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Faecalibacterium prausnitzii L2-6] Length = 288 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 27/195 (13%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVR 71 I V +SGG DSM + + + + + +D E + E+ Sbjct: 39 AGDKIAVCISGGKDSMLMAKLMQELQRHSDVP-FELVFLVMDPGYNEINRQKIESNAEL- 96 Query: 72 YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L I ++ + R + A+ + I H Sbjct: 97 --------LHIPVTIFESNIFSVANNTDKNPCYLCARMRRGHLYSKARELGCNKIALGHH 148 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 F+D +ET M + + M + + + + RP R EDI ++ + Sbjct: 149 FNDVIETTVMSMFYGSQLQ--AMPPMLHSTSFP-GMTLIRPMYCIREEDILAWKRYNELE 205 Query: 188 WCEDPSNTDDRFERV 202 + + RF Sbjct: 206 FIQCAC----RFTEN 216 >gi|264680405|ref|YP_003280315.1| PP-loop [Comamonas testosteroni CNB-2] gi|262210921|gb|ACY35019.1| PP-loop [Comamonas testosteroni CNB-2] Length = 330 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + R+ K A+++D + +V + Sbjct: 69 GDRVMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 123 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + R A++ + A + T + H DD Sbjct: 124 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 183 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM + D + RP +D + +N Sbjct: 184 IVQTMMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTTRWAQYQNFPII- 238 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N D +RV V +R+ D F+ + V + Sbjct: 239 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 297 Query: 248 SIIAISQDILNIDSTLL 264 + IA + D L Sbjct: 298 TGIADPNGDMAFDHEEL 314 >gi|296102189|ref|YP_003612335.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056648|gb|ADF61386.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 311 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ K A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-KFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPEYLDKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + +A Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + ++ L D + Sbjct: 256 DVELFDFKGINHDSEVVNGGDLAFDREEI 284 >gi|302038685|ref|YP_003799007.1| putative P-loop ATPase [Candidatus Nitrospira defluvii] gi|300606749|emb|CBK43082.1| putative PP-loop ATPase, YdaO type [Candidatus Nitrospira defluvii] Length = 305 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 29/199 (14%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +++ F + ILVAVSGG DS+ L L ++ + A+ V+ + ++ Sbjct: 30 AIKSF-KMFTPEDRILVAVSGGKDSLALWHILLAL-------GYRADALYVNLGIGGYSE 81 Query: 68 DEVRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREA------------RYALISE 112 + R V + AH +V + G+ A RY + Sbjct: 82 ESHRKVRHYADTVAAAHGAKLIVHVVEQEAGAGIRELATILHRPTCSTCGTIKRYQ-FNR 140 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFL 170 A + ++ T H DD+ + E L T+ + + +P Sbjct: 141 AAVEQDYDVMATGHNLDDEAARLLGNVLHWQDEY---LDKQSPTLPASVEGFAKKVKPLC 197 Query: 171 RCRREDIRSFLLQRNISWC 189 R +I ++ + I + Sbjct: 198 RLSEREIAAYAVVNRIDYI 216 >gi|225684431|gb|EEH22715.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 1416 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 120/365 (32%), Gaps = 90/365 (24%) Query: 96 TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-------------- 141 + +AR+ RY ++ K N + H DD +ETV R R Sbjct: 22 SNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVETVLSRLVRGQRQASGFTGVASV 81 Query: 142 DYAEKGMGLSGMCDTILY------------------------------------------ 159 + + G+ G+ ++ + Sbjct: 82 GHIPECHGIYGLAESGSFIKLKNVKSRIDPAGRHPVHDRERPDESQLKQAWGIDSNTPHS 141 Query: 160 --------DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD 210 D +++ RPF + + S LQ NI + D +N D R +R + + Sbjct: 142 NDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIKFAIDKTNFDPTVTSRNTLRYLLSN 201 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI------LNIDSTLL 264 L L+ L + V+ + + + +R I D+ +N + L Sbjct: 202 DMLPR-ALRAPSILQLIEN-SKQVSEELNRQSNIFLRKSQIIKLDLRTGSLVINFPNPRL 259 Query: 265 FYLLRVSAAICGGQISLPGYRS----MERVMLFLKSGKRGCVSIGRVVIDRRANFLWI-- 318 VS G S+ ++ + R + + G++ V + + A + Sbjct: 260 IQNFGVSLDDPVGPASVMTQKAMVITLRRFLDVILPGQKNHVPFHKF---KSALQIIFPA 316 Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP---SGIPPIIAQR 375 + A+ + + + + +WD RY + ++ + P++Y + P P + R Sbjct: 317 SEAINDHVDSVTWSDWQ-LWDNRYWIRLGAEKV----PRTYPIEEWPYEYRDTPVPLVVR 371 Query: 376 ALSSM 380 + S+ Sbjct: 372 PMKSL 376 >gi|195941077|ref|ZP_03086459.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024] gi|295095744|emb|CBK84834.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 311 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPEYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + +A Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + ++ L D + Sbjct: 256 DVELFDFKGINHGSEVVNGGDLAFDREEI 284 >gi|157370847|ref|YP_001478836.1| C32 tRNA thiolase [Serratia proteamaculans 568] gi|205830624|sp|A8GF18|TTCA_SERP5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157322611|gb|ABV41708.1| PP-loop domain protein [Serratia proteamaculans 568] Length = 310 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 22/255 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K+ P+ + R ++ A + AT I H DD Sbjct: 94 ESLGVEYQIVEENTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + + Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFSVAKGFPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + ++ Sbjct: 209 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRLETMFSAMQNVVPSHLSDYNLFDFKGIHH 267 Query: 248 SIIAISQDILNIDST 262 + L D Sbjct: 268 GSEVVDGGDLAFDRE 282 >gi|206602942|gb|EDZ39422.1| probable ATPase, PP-loop superfamily [Leptospirillum sp. Group II '5-way CG'] Length = 307 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 27/198 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ F +S ILVAVSGG DS+ L L+ + + + +D + Sbjct: 36 KAIDEFEMFTKS----DRILVAVSGGKDSLALWDILNRL-------GYQTTGFHLDLGIG 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----------GLMAAAREARYALISEH 113 + + V R ++ V S + +A ++ L + Sbjct: 85 GYSGESVEKTRAFALRHGLSLHVESLVQEVGASVANIADLTNRPPCSACGVSKRHLFNRA 144 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLR 171 AK + ++ T H DD+ R + G + L D + +P R Sbjct: 145 AKKLECQVVATGHNLDDEAS----RLLGNILHWQDGYLEKQNPALPDEGGLVRKVKPLNR 200 Query: 172 CRREDIRSFLLQRNISWC 189 +++ ++ + I++ Sbjct: 201 LTEKEMAAYAFLKGINYV 218 >gi|255526695|ref|ZP_05393599.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296185613|ref|ZP_06854022.1| PP-loop family protein [Clostridium carboxidivorans P7] gi|255509627|gb|EET85963.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296049741|gb|EFG89166.1| PP-loop family protein [Clostridium carboxidivorans P7] Length = 289 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAI----SV 58 +++++ + + + I VA+SGG DSM + + R +++F A+ Sbjct: 39 KFVKAIKNY-KLVEEGDKIAVAISGGKDSMLMAKLFQELHRHRQMNFQLEFIAMDPGYH- 96 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEH 113 KD + + D C L I + + Q R + Sbjct: 97 --------KDIKKLLIDNCEYLNIPVQIFESGIFEVADKIAQKYPCYMCARMRRGALYTK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK + + H F+D +ET + L + T + + RP Sbjct: 149 AKELGCNKLALGHHFNDVIETTLLNVL-YSGNFKTMLPKLKSTNF--EGIELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E+I+ F+ + I Sbjct: 206 EENIQRFIQKSGI 218 >gi|58584039|ref|YP_203055.1| C32 tRNA thiolase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625816|ref|YP_453188.1| hypothetical protein XOO_4159 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|75433627|sp|Q5GUF3|TTCA_XANOR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|123520583|sp|Q2NXR3|TTCA_XANOM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|58428633|gb|AAW77670.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369756|dbj|BAE70914.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 22/243 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 I+V +SGG DS +L L + + F+ ++V+ L + D +V Sbjct: 50 PGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLPAY 104 Query: 77 CSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + +V + + + R + +A+T T I H D Sbjct: 105 LDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHHRD 164 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T +M L+ M + D + RP R I ++ R Sbjct: 165 DIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREAHIAAYAQARQFPI 219 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + R+ V + H + + + + + + + + + Sbjct: 220 I--PCNLCGS-QENLQRQQVGKMLQHWDHEQPGRVEQIARALGDVRPEQLADRTLFDFLA 276 Query: 249 IIA 251 + Sbjct: 277 LGR 279 >gi|21244941|ref|NP_644523.1| C32 tRNA thiolase [Xanthomonas axonopodis pv. citri str. 306] gi|81798222|sp|Q8PEW6|TTCA_XANAC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|21110658|gb|AAM39059.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 22/245 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 48 IAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + ++V + + R + +A+T T I H Sbjct: 103 AYLRGLGVPFAIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N + R+ V + + + + + + + Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKLLQQWDRESPGRVEQIARALGDVRPEQLADRTLFDF 274 Query: 247 RSIIA 251 ++ Sbjct: 275 LALGR 279 >gi|299532629|ref|ZP_07046017.1| PP-loop [Comamonas testosteroni S44] gi|298719264|gb|EFI60233.1| PP-loop [Comamonas testosteroni S44] Length = 331 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + R+ K A+++D + +V + Sbjct: 70 GDKVMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 124 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + R A++ + A + T + H DD Sbjct: 125 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 184 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM + D + RP +D + +N Sbjct: 185 IVQTMMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTTRWAQYQNFPII- 239 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N D +RV V +R+ D F+ + V + Sbjct: 240 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 298 Query: 248 SIIAISQDILNIDSTLL 264 + IA + D L Sbjct: 299 TGIADPNGDMAFDHEEL 315 >gi|18404236|ref|NP_566753.1| RSY3 (RASPBERRY 3) [Arabidopsis thaliana] gi|14532774|gb|AAK64168.1| unknown protein [Arabidopsis thaliana] gi|332643402|gb|AEE76923.1| protein raspberry 3 [Arabidopsis thaliana] Length = 462 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%) Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRS 179 Q E +R R G+ + I + + ++ + RP L +ED+ Sbjct: 8 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 67 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235 W EDP+N F R R+R + +++ L + + + R V+ Sbjct: 68 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 127 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVML 292 LI + +TV + + + LN L + A+ + + + ++ Sbjct: 128 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 187 Query: 293 FLKS 296 ++++ Sbjct: 188 YIRA 191 >gi|258544149|ref|ZP_05704383.1| PP-loop family protein [Cardiobacterium hominis ATCC 15826] gi|258520591|gb|EEV89450.1| PP-loop family protein [Cardiobacterium hominis ATCC 15826] Length = 326 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 22/247 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + H++V +SGG DS +L L S+ + K +A+++D + +V Sbjct: 52 QMIEAGDHVMVCLSGGKDSYAMLDLLLSLQRSAPV-EFKLTAVNLD-QKQPG---FPEHV 106 Query: 74 S-DVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + + + + ++ P + + R + +AK T I Sbjct: 107 LPEYLASIGVDYHIIESDTYSIVTDKIAPGNTMCSLCSRLRRGHLYTYAKQFGMTKIALG 166 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184 H D +ET ++ G L M + D I RP C DI + R Sbjct: 167 HHKFDIMETFFLNLF-----HGGQLKAMPPKLQSDDGAHIVIRPLAYCDERDIAKYAEWR 221 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 P N + R+ ++++ L L K+ + + + Sbjct: 222 QFPII--PCNLCGS-QENLQRKAIKEMLLQWDKLAPKRLDSIFAALTRVRPSHLLDRELF 278 Query: 245 HMRSIIA 251 ++ A Sbjct: 279 DFAALGA 285 >gi|150006134|ref|YP_001300878.1| hypothetical protein BVU_3645 [Bacteroides vulgatus ATCC 8482] gi|254883522|ref|ZP_05256232.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294775313|ref|ZP_06740836.1| PP-loop family protein [Bacteroides vulgatus PC510] gi|319641690|ref|ZP_07996373.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A] gi|149934558|gb|ABR41256.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] gi|254836315|gb|EET16624.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|294450890|gb|EFG19367.1| PP-loop family protein [Bacteroides vulgatus PC510] gi|317386664|gb|EFV67560.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A] Length = 251 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70 R + IL+ +SGG DS+ L + K KF+ I+V + + E Sbjct: 26 RLIEDGDKILIGLSGGKDSL---ALLELLARRSRILKPKFTVIAVHVGMTNIPYQSDLE- 81 Query: 71 RYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ L + ++ + R + AK I H Sbjct: 82 -YLKGYSEDLGVPFVHYETFFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD LET+ M +G + ++ + I RP D+ R Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARIRG 194 >gi|213647076|ref|ZP_03377129.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 268 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFAEAKAFPII--PCNL 212 >gi|213580971|ref|ZP_03362797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 224 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 20/197 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT 195 F + P N Sbjct: 198 RFAEAKAFPII--PCNL 212 >gi|313904543|ref|ZP_07837919.1| PP-loop domain protein [Eubacterium cellulosolvens 6] gi|313470685|gb|EFR66011.1| PP-loop domain protein [Eubacterium cellulosolvens 6] Length = 396 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 26/237 (10%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72 LV P I V +SGG DSM L+ L L R+ KI F + + C+ ++ + Sbjct: 135 ELVKPGDKIAVCISGGKDSM-LMAMLFKELKRRN--KIPFEVVYL--CMNPGYSETTLGM 189 Query: 73 VSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + L + + + ++ P++ AR R + A+ + I H Sbjct: 190 IEGNAKLLDLPLTMFETRIFDAVDNIPKSPCYICAR-MRRGYLYRKAQDLGCNKIALGHH 248 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 +DD +ET M + + + T L + RP R +DI+ + + Sbjct: 249 YDDVIETTLMSIL-YSGQVQTMMPKLRSTNF--KGLELIRPLYLIREDDIKDWRDYNGLQ 305 Query: 188 WC------EDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 + D + D +RV ++ + I ++ F+ + NAV Sbjct: 306 FIRCACHFTDTCSIDGHGGTGSKRVEAKQLIAQIKKTTPAVEGNIFRSMENISLNAV 362 >gi|77460453|ref|YP_349960.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1] gi|123603637|sp|Q3K8D5|TTCA_PSEPF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|77384456|gb|ABA75969.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1] Length = 274 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 31/273 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVTDF-NMIEDGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFEIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 AT + H DD +ET ++ + + K M D + RP C +DI Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 189 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 +++ + P N + R+ V+++ ++ ++ ++ Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRS 238 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270 + + + L ID T + V Sbjct: 239 LQNVIPSQLADRNLFDFTSLKIDETAASRFVNV 271 >gi|227872664|ref|ZP_03990994.1| PP-loop family ATPase [Oribacterium sinus F0268] gi|227841478|gb|EEJ51778.1| PP-loop family ATPase [Oribacterium sinus F0268] Length = 393 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 11/172 (6%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DSM + + F + +D + + + + + L Sbjct: 144 ICVCISGGKDSMIMAKLFQELKRHNKFP-FTLHFLCMDPGYNAYNR---QIIEENAALLG 199 Query: 82 IAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 I + + R + AK + I H FDD +ETV M Sbjct: 200 IPLEFFQSDIFESVFTIDSSPCYVCARMRRGHLYSKAKELGCNKIALGHHFDDVIETVLM 259 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 Y+ + + + ++ + + RP R +DI + +++ Sbjct: 260 GML--YSGQFQAMMPKLHSTNFE-GMELIRPLYYVREKDIIHWRNYNQLNFI 308 >gi|15897505|ref|NP_342110.1| hypothetical protein SSO0586 [Sulfolobus solfataricus P2] gi|284174823|ref|ZP_06388792.1| hypothetical protein Ssol98_09246 [Sulfolobus solfataricus 98/2] gi|6015886|emb|CAB57713.1| hypothetical protein [Sulfolobus solfataricus P2] gi|13813752|gb|AAK40900.1| Conserved hypothetical protein [Sulfolobus solfataricus P2] gi|261602266|gb|ACX91869.1| PP-loop domain protein [Sulfolobus solfataricus 98/2] Length = 323 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 27/247 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRY 72 + +V IL+AVSGG DS+ L L + + A +++ ++ ++E V+ Sbjct: 42 QEIVNSNKILLAVSGGKDSLVLADTLSQFI-----HPSRLIAFNINEGIKGYNRNEYVKK 96 Query: 73 VSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTI 117 + + L I +K K R LI+E + Sbjct: 97 LEEYLKDLGIELIKSGFKEEVGFSLDEMLEASLKKKLNVSACTFCGGFRRKLINEAGIKV 156 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + T H DD+++T+ + R + + G ++ + +P + + Sbjct: 157 AADYVATGHNLDDEVQTIVINLIRGDLLRLIRF-GDKPLMVSSKFVMRVKPLRKIYEWET 215 Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNN 232 + + + E + R +VR + ++ L +++F ++ K+ Sbjct: 216 TMYAHLKGFEFQETECPYISQKPTLRAKVRDLLYKLEEKKPGTLLRILEQFDEISEKIKK 275 Query: 233 AVAMLIP 239 + Sbjct: 276 EYRLTNE 282 >gi|319789617|ref|YP_004151250.1| PP-loop domain protein [Thermovibrio ammonificans HB-1] gi|317114119|gb|ADU96609.1| PP-loop domain protein [Thermovibrio ammonificans HB-1] Length = 309 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 28/199 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F + +LVAVSGG DS+ L ALH + + + Sbjct: 41 KTIKKFKMFSKR----EKVLVAVSGGKDSLSLWFALHRLGYETYGFHVSLGIK----GW- 91 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREA--------RYALIS 111 + ++ + + R+ V K T A R+ RY L++ Sbjct: 92 DYSERSLEMCRKLSERIGRPLIVFDLKEEFGYTIEEIAKGTGRRDVCSVCGTFKRY-LMN 150 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPF 169 + A+ ++ T H DD E+ + +G G +L + +PF Sbjct: 151 KVAREHGFKVVATGHNLDD--ESAL--LLSNTIRWEIGYLGRQAPVLPEEGGFARKVKPF 206 Query: 170 LRCRREDIRSFLLQRNISW 188 ++ S+ + NI + Sbjct: 207 CFLTEKETVSYAIVNNIEF 225 >gi|146311794|ref|YP_001176868.1| C32 tRNA thiolase [Enterobacter sp. 638] gi|205830587|sp|A4WAT7|TTCA_ENT38 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145318670|gb|ABP60817.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter sp. 638] Length = 311 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 22/255 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ K A+++D + ++ + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-KFSLVAVNLD-QKQPG---FPEHILPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K+ P+ + R ++ A + AT I H DD Sbjct: 94 EQQGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F R Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAREYPII- 208 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F ++ V + ++ + Sbjct: 209 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLSDVELFDFKGIQH 267 Query: 248 SIIAISQDILNIDST 262 ++ L D Sbjct: 268 GSEVVAGGDLAFDRE 282 >gi|157962045|ref|YP_001502079.1| C32 tRNA thiolase [Shewanella pealeana ATCC 700345] gi|205830629|sp|A8H4Q7|TTCA_SHEPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157847045|gb|ABV87544.1| PP-loop domain protein [Shewanella pealeana ATCC 700345] Length = 311 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 77/212 (36%), Gaps = 20/212 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K + A+++D + +++ L +A+ Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEDILPA--YLDTLGVAYH 99 Query: 86 VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195 G + + D + RP R +DI + + P N Sbjct: 160 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYAREKDIAEYAALKGFPII--PCNLCGS 213 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ + D F ++ Sbjct: 214 QENLKRAAVKEMLVQWDKQHPGRIETIFTAMQ 245 >gi|110825826|gb|ABH00989.1| PP superfamily ATPase [Rhodobacter capsulatus] Length = 250 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R + A ++D + + + Sbjct: 44 RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 SR+ + H + + A R + A+ + ++ H DD Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 LET +M G + + D +L++ RP D F Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207 >gi|257466208|ref|ZP_05630519.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563] gi|315917366|ref|ZP_07913606.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563] gi|313691241|gb|EFS28076.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563] Length = 262 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 16/190 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 22 KFVKAVQDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFELQFISMNPGF 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTI 117 A D ++ ++ L I ++ + + R ++ + + + Sbjct: 79 --EAMDIDKFEQNL-KDLEIDCTIFDANVWQVAFDQDPESPCFLCAKMRRGVLYKKVEEL 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + K + + L I RP + + +DI Sbjct: 136 GCNKLALGHHFDDVIETTMINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191 Query: 178 RSFLLQRNIS 187 +SF+ I Sbjct: 192 KSFMKSNEIE 201 >gi|114770126|ref|ZP_01447664.1| hypothetical protein OM2255_10835 [alpha proteobacterium HTCC2255] gi|114548963|gb|EAU51846.1| hypothetical protein OM2255_10835 [alpha proteobacterium HTCC2255] Length = 280 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 17/176 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL AL + R I+ A ++D + + + Sbjct: 44 RGKKWLVCLSGGKDSYTLLAALTELQ-WRGLLPIEILACNLD---QGQPNFPATVLPEFL 99 Query: 78 SRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ + +S+V K +T A R + A+ + ++ H D Sbjct: 100 KKMGVPNRIEYEDTYSIVKEKVPAGRT-YCAMCSRLRRGNLYRIAREEGCSAVVLGHHRD 158 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 D LET +M G + + + +L++ RP D F N Sbjct: 159 DMLETFFMNLFHG----GRLATMPPKLVNDEGDLFVYRPLAHVAEADCEKFAKSLN 210 >gi|114566542|ref|YP_753696.1| PP family ATPase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337477|gb|ABI68325.1| ATPase of the pp-loop superfamily [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 240 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 19/222 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVR 71 R L + + +SGG DS+ L+ +L + + FS + +D EV Sbjct: 21 RLLENGDRVAIGMSGGKDSL---TLLYFLLLLYRYTPLDFSVFPVYLDLGW--ENDIEVM 75 Query: 72 YVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 C L ++ +++ + + R ++ AK +N + Sbjct: 76 LA--FCEELGTPLTIEKTNIGQIVFDNRQEKNPCSLCANLRRGALNRVAKGLNCNKVALG 133 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD + T+++ +G T L +++ I RP + DI F+ + Sbjct: 134 HHLDDVVNTMFLSML----FEGRFKVFKPSTYLDRMDITIIRPLVYVEEADIIRFIEAKG 189 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 ++ + D +R V + I+ H + K + Sbjct: 190 LALAPNRCPADGVGKRAEVEELLNLIESHFPGARKKFLASIE 231 >gi|116749048|ref|YP_845735.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698112|gb|ABK17300.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB] Length = 273 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 18/179 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVSDV 76 I VAVSGG DSM L+ L R A+ VD D E +V + Sbjct: 25 GDRIAVAVSGGKDSML-LLWLLRERLSRIPVSYDLVAVHVDPGFDPQGADRLEAFFVRE- 82 Query: 77 CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + V+ + + + R + A + + I H DD Sbjct: 83 ----GFRYEVIRTDHGRIAHGPDNRENPCFLCSRLRRTALFRKAHELGCSKIAMGHNQDD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET ++ GM + +D + + RP + + + Sbjct: 139 LIETFFINIFYGAQVAGM----VPRQSFFDGAVTVIRPLALVPAAKVLRLSQRLGLPIV 193 >gi|254512428|ref|ZP_05124495.1| hypothetical protein RKLH11_2973 [Rhodobacteraceae bacterium KLH11] gi|221536139|gb|EEE39127.1| hypothetical protein RKLH11_2973 [Rhodobacteraceae bacterium KLH11] Length = 297 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 16/217 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L+ + R + A ++D + + + R+ Sbjct: 55 RWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLKRM 110 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + + A R + A+ + I+ H DD LE Sbjct: 111 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAIVLGHHRDDILE 170 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 T +M G + + + +L++ RP D F D Sbjct: 171 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCEKFANAMRYPIIPCDL 226 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + D +R +V++ + + ++ + F+ L Sbjct: 227 CGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRALSNA 263 >gi|322832780|ref|YP_004212807.1| PP-loop domain protein [Rahnella sp. Y9602] gi|321167981|gb|ADW73680.1| PP-loop domain protein [Rahnella sp. Y9602] Length = 311 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS +L L ++ A+++D ++ + + Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD---QKQPGFPAHILPEYLD 94 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L + + +V+ K+ P+ + R ++ A + T I H DD Sbjct: 95 ALGVEYKIVTEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGCTKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAIAREYPII-- 208 Query: 192 PSNT 195 P N Sbjct: 209 PCNL 212 >gi|294140932|ref|YP_003556910.1| hypothetical protein SVI_2161 [Shewanella violacea DSS12] gi|293327401|dbj|BAJ02132.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 316 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 20/212 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K + A+++D + +EV + L +A+ Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEVLP--NYLDSLNVAYH 99 Query: 86 VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVRSKIPEGQKTCSLCSRLRRGTLYGFAQQIGATKIALGHHRDDIIETMFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195 G + + D + RP R +DI + ++ P N Sbjct: 160 MF----YAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKSFPII--PCNLCGS 213 Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ + D F ++ Sbjct: 214 QENLKRASVKAMLEQWDTEHPGRIESIFTAMQ 245 >gi|283768767|ref|ZP_06341678.1| PP-loop family protein [Bulleidia extructa W1219] gi|283104553|gb|EFC05926.1| PP-loop family protein [Bulleidia extructa W1219] Length = 253 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 36/239 (15%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVD-------------HC 61 + I V VSGG DS+ LL AL + + FS I + H Sbjct: 20 IQKGDRICVGVSGGKDSVLLLYALSLYQKAAKRIANKDFSVIGIHLEMGFENMDFTDLH- 78 Query: 62 LRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118 + K E+ YV D +RL + KN+K Q L + + + I + AK + Sbjct: 79 ----SFLKKKEIEYV-DYPTRL-YEILKLHPKNNKIQCSLCS---KLKKGAIVQAAKEYS 129 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + AH DD +ET+ M + L + RP + C +IR Sbjct: 130 CNKVAFAHHADDAIETLLMNMIYGARIS----TFSPAMHLKVSGMDFIRPLIYCFENEIR 185 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + Q + + + +D + + R+ +++ LH +Y ++ + + A L Sbjct: 186 KTVEQEQLPLVK-STCPNDGYTK---RQETKEL-LHQIYHAFPTAKENFLTSLSNQAQL 239 >gi|254239559|ref|ZP_04932881.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|126192937|gb|EAZ57000.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] Length = 275 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 31/245 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L + I+F ++V+ H L Sbjct: 32 GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82 Query: 69 EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + I +SVV K + +T + R + A I AT + Sbjct: 83 -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD LET ++ +G + D + RP C +DI ++ + Sbjct: 141 GHHRDDILETFLLQHVLRRHPEG---HCSPKLLADDGRNVVIRPLAYCSEKDIEAYSQLK 197 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 P N + R+ V+++ L + + + + N V + Sbjct: 198 EFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLF 254 Query: 245 HMRSI 249 ++ Sbjct: 255 DFANL 259 >gi|224827083|ref|ZP_03700180.1| PP-loop domain protein [Lutiella nitroferrum 2002] gi|224600749|gb|EEG06935.1| PP-loop domain protein [Lutiella nitroferrum 2002] Length = 320 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 22/230 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L + I FS ++V+ L + +V + Sbjct: 41 QGDRVMVCLSGGKDSFALLDILLGLQKS---APIDFSIVAVN--LDQKQPGFPEHVLPEY 95 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + + + +V + R ++ A + AT I H D Sbjct: 96 LTAIGVEYRIVEEDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRD 155 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D L T+++ K S + D + RP CR +D+ + R Sbjct: 156 DMLHTLFLNMFYGGKLK----SMPPKLVSDDGKHMVIRPLAYCREKDLERYARLREFPII 211 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N +R V+ V D D F+ L+ V + +A Sbjct: 212 --PCNLCGSQPNLQRQVVKEMVNDWDKRFPGRLESMFRALQNVVPSHLAD 259 >gi|308049624|ref|YP_003913190.1| tRNA s(2)C-32 sulfurtransferase [Ferrimonas balearica DSM 9799] gi|307631814|gb|ADN76116.1| tRNA s(2)C-32 sulfurtransferase [Ferrimonas balearica DSM 9799] Length = 312 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 17/181 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V +SGG DS LL L ++ R+ + A+++D + +++ Y+ + Sbjct: 39 VMVCLSGGKDSYTLLDILLNLQ-HRAPVNFQLVAVNLD-QKQPGFPEDILPNYLKTLGVT 96 Query: 80 LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +S+V K + +T + R + A+ I AT I H DD +ET+ Sbjct: 97 YHILEKDTYSIVKEKIPEGKT-TCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETL 155 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ G L M +L D + RP CR +DI + + P N Sbjct: 156 FLNMF-----YGGKLKAMPPKLLSDDGANMVIRPMAYCREKDISEYADLKAFPII--PCN 208 Query: 195 T 195 Sbjct: 209 L 209 >gi|304396028|ref|ZP_07377910.1| PP-loop domain protein [Pantoea sp. aB] gi|304356397|gb|EFM20762.1| PP-loop domain protein [Pantoea sp. aB] Length = 311 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 19/267 (7%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L S+ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPV-NFSLIAVNLD-QKQPGF 84 Query: 67 KDEV--RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + +Y+ RI +S+V K + +T + R ++ A + T Sbjct: 85 PEHILPQYLEAQGVEYRIIEEDTYSIVKEKVPEGKT-TCSLCSRLRRGILYRVATELGCT 143 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD L+T+++ KGM M D D + RP CR +DI F Sbjct: 144 KIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199 Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 R P N +R V +RD D F ++ V + +A + Sbjct: 200 SDARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHLADI 257 Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 258 NLFDFKGIKHGDAVVDGGDLAFDRETL 284 >gi|156370799|ref|XP_001628455.1| predicted protein [Nematostella vectensis] gi|156215432|gb|EDO36392.1| predicted protein [Nematostella vectensis] Length = 321 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 18/202 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + + SGG DS L L ++ ++R +K +SVD + D + + + Sbjct: 52 VAIGASGGKDSTVLAYVLKTL-NERYNYGLKLLLLSVDEGITGYRDDSLE----LAKNYQ 106 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + ++ ++ R + A + I+T H DD Sbjct: 107 LVNELLYFQELYGWSMDAIVKQIGLKNNCTFCGVFRRQALDRGAMLLKVNKIVTGHNADD 166 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ETV M R + T + + +PF ++I + + + + Sbjct: 167 IAETVIMNVLRGDIARLR--RCTAITTGTEGAIPRCKPFKYTYEKEIVMYAYFKKLDYFS 224 Query: 191 DPSNTDDRFERVRVRRFVRDID 212 R R +++D++ Sbjct: 225 TECIYSPNAYRGHARTYLKDLE 246 >gi|261491597|ref|ZP_05988180.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494957|ref|ZP_05991426.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309366|gb|EEY10600.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312723|gb|EEY13843.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 312 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEV--RYVSD 75 ++V +SGG DS LL L ++ + FS ++V+ + +EV RY+ Sbjct: 40 GDRVMVCLSGGKDSYTLLDILLNLQQS---APVNFSVVAVNLDQKQPGFPEEVLPRYLES 96 Query: 76 VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +I +V K + +T + R ++ A + AT I H DD Sbjct: 97 IGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDM 155 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T+++ K S I D + RP C+ +DI + + Sbjct: 156 LATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPII-- 209 Query: 192 PSNT 195 P N Sbjct: 210 PCNL 213 >gi|254361814|ref|ZP_04977949.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica PHL213] gi|153093349|gb|EDN74345.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica PHL213] Length = 312 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEV--RYVSD 75 ++V +SGG DS LL L ++ + FS ++V+ + +EV RY+ Sbjct: 40 GDRVMVCLSGGKDSYTLLDILLNLQQS---APVNFSVVAVNLDQKQPGFPEEVLPRYLES 96 Query: 76 VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +I +V K + +T + R ++ A + AT I H DD Sbjct: 97 IGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDM 155 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L T+++ K S I D + RP C+ +DI + + Sbjct: 156 LATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPII-- 209 Query: 192 PSNT 195 P N Sbjct: 210 PCNL 213 >gi|194272234|gb|ACF37202.1| At3g24560 [Arabidopsis thaliana] Length = 456 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%) Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRS 179 Q E +R R G+ + I + + ++ + RP L +ED+ Sbjct: 2 QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 61 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235 W EDP+N F R R+R + +++ L + + + R V+ Sbjct: 62 ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 121 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVML 292 LI + +TV + + + LN L + A+ + + + ++ Sbjct: 122 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 181 Query: 293 FLKS 296 ++++ Sbjct: 182 YIRA 185 >gi|330829641|ref|YP_004392593.1| PP-loop superfamily ATPase MesJ [Aeromonas veronii B565] gi|328804777|gb|AEB49976.1| PP-loop superfamily ATPase MesJ [Aeromonas veronii B565] Length = 302 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 22/205 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS G+L L S+ + A+++D + +V + Sbjct: 37 GDKVMVCLSGGKDSFGMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPVHVLPEYL 91 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I + +V + R ++ A+ + T I H DD Sbjct: 92 DSLGIEYKIVEEDTYSIVKEKVPEGKTTCSLCSRLRRGILYRTAQELGCTKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K S + D + RP C+ +D+ + + Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLIRYADVKAFPII- 206 Query: 191 DPSNT---DDRFERVRVRRFVRDID 212 P N + +R +++ ++D D Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQDWD 230 >gi|307243871|ref|ZP_07525996.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678] gi|306492693|gb|EFM64721.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678] Length = 296 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---- 58 I++++ + +LV I VA+SGG DS+ + + + + F + + Sbjct: 41 KFIKAIKAY--NLVEEGDKIAVAISGGKDSILMAKMFQEL---KRHSPVNFEVVYIGMDP 95 Query: 59 --DHCLRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALIS 111 +R+ D RY L I V ++ + R + Sbjct: 96 GYHETIRDILLDNARY-------LEIPIQVFDSQIFEVADRIASDYPCYMCARMRRGALY 148 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A+ + + H FDD +ET M L + T L + RP Sbjct: 149 GKAEALGCNKLALGHHFDDVIETTMMNIL-CSGNFKTMLPRLKSTNF--DGLELIRPLYY 205 Query: 172 CRREDIRSFLLQRNISWC 189 R EDI ++ ++ Sbjct: 206 IREEDIIRWIKYTGLAPI 223 >gi|163739494|ref|ZP_02146904.1| PP-loop [Phaeobacter gallaeciensis BS107] gi|161387247|gb|EDQ11606.1| PP-loop [Phaeobacter gallaeciensis BS107] Length = 295 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R LV +SGG DS LL L+ + R + A ++D + + Sbjct: 46 REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ + H + + A R + A+ + ++ H Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGH 161 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD LET +M G + + + +L++ RP D F N Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEVDCEKFAKALNY 217 Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + D +R +V++ + + ++ + F+ L Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258 >gi|212692022|ref|ZP_03300150.1| hypothetical protein BACDOR_01517 [Bacteroides dorei DSM 17855] gi|237708965|ref|ZP_04539446.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724693|ref|ZP_04555174.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212665414|gb|EEB25986.1| hypothetical protein BACDOR_01517 [Bacteroides dorei DSM 17855] gi|229436888|gb|EEO46965.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229457027|gb|EEO62748.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 251 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70 R + IL+A+SGG DS+ L + K KF+ I+V + + E Sbjct: 26 RLIEDGDKILIALSGGKDSL---ALLELLARRSRILKPKFAVIAVHVGMTNIPYQSDLE- 81 Query: 71 RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ L + ++ + R + AK I H Sbjct: 82 -YLKGYSEDLGVPFVHYETFFDLSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD LET+ M +G + ++ + I RP D+ Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARILG 194 >gi|85059473|ref|YP_455175.1| hypothetical protein SG1495 [Sodalis glossinidius str. 'morsitans'] gi|123519274|sp|Q2NSV5|TTCA_SODGM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|84779993|dbj|BAE74770.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 353 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 22/255 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L ++ A+++D + +V + Sbjct: 41 GDRIMVCLSGGKDSYTLLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPAHVLPEYL 95 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V+ + R ++ A + AT I H DD Sbjct: 96 AAQGVEYHIVTEDTYHIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATRIALGHHQDD 155 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F R Sbjct: 156 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIARFAQARQFPII- 210 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N +R + +RD D F+ ++ V + ++ M+ Sbjct: 211 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRSETLFRAMQNVVPSHLSDTHLFDFKGLMQ 269 Query: 248 SIIAISQDILNIDST 262 + + D Sbjct: 270 GSAVVDGGDIAFDRE 284 >gi|15669670|ref|NP_248483.1| hypothetical protein MJ_1478 [Methanocaldococcus jannaschii DSM 2661] gi|2501588|sp|Q58873|Y1478_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1478 gi|1592117|gb|AAB99482.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 303 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 17/182 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILVAVSGG D L + ++ + +++ ++ V Sbjct: 46 KMLSKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIEGFSEESLKAV 98 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126 ++ +L + VV+ K+ +T ++ RY L+++ +I+T H Sbjct: 99 KELAEKLEVPLHVVNLKDITGKTMEDIRGKKCSICGTTKRY-LMNKFGYENGFDVIVTGH 157 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD++ + + + ++ + + +D L + F E I + I Sbjct: 158 NLDDEV-SFILNNLFNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAEEI 215 Query: 187 SW 188 + Sbjct: 216 PY 217 >gi|265756274|ref|ZP_06090603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263233865|gb|EEZ19474.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 247 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70 R + IL+A+SGG DS+ L + K KF+ I+V + + E Sbjct: 26 RLIEDGDKILIALSGGKDSL---ALLELLARRSRILKPKFAVIAVHVGMTNIPYQSDLE- 81 Query: 71 RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 Y+ L + ++ + R + AK I H Sbjct: 82 -YLKGYSEDLGVPFVHYETFFDLSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD LET+ M +G + ++ + I RP D+ Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARILG 194 >gi|99080150|ref|YP_612304.1| PP-loop [Ruegeria sp. TM1040] gi|123379114|sp|Q1GJX4|TTCA_SILST RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|99036430|gb|ABF63042.1| PP-loop [Ruegeria sp. TM1040] Length = 295 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 15/172 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L+ + R + A ++D + + + ++ Sbjct: 53 KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLEKM 108 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ H + + A R + A+ + ++ H DD LE Sbjct: 109 QVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 168 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 T +M G + + + +L++ RP D F N Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMN 216 >gi|259416595|ref|ZP_05740515.1| PP-loop domain containing protein [Silicibacter sp. TrichCH4B] gi|259348034|gb|EEW59811.1| PP-loop domain containing protein [Silicibacter sp. TrichCH4B] Length = 311 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L+ + R + A ++D + + + ++ Sbjct: 69 KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLEKM 124 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + + A R + A+ + ++ H DD LE Sbjct: 125 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 184 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 T +M G + + + +L++ RP D F N Sbjct: 185 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARSMN 232 >gi|319791723|ref|YP_004153363.1| pp-loop domain protein [Variovorax paradoxus EPS] gi|315594186|gb|ADU35252.1| PP-loop domain protein [Variovorax paradoxus EPS] Length = 316 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS +L L + + R+ A+++D + +EV S Sbjct: 56 GDKVMVCVSGGKDSYAMLDILLKLKA-RAPIHFDIVAVNLD-QKQPGFPEEVLP--KYLS 111 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L +A + + + R ++ A + AT + H DD Sbjct: 112 ELGVAFHIENQDTYSIVKRVIPEGKTTCGLCSRLRRGILYRVADELGATKVALGHHRDDM 171 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 L+T ++ G S + D + RP +D+ + R Sbjct: 172 LQTFFLNMF----FAGKLKSMPPKLVSDDGKHIVIRPLAYVAEKDLVRWAQHREFPII 225 >gi|254480597|ref|ZP_05093844.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] gi|214039180|gb|EEB79840.1| PP-loop family protein [marine gamma proteobacterium HTCC2148] Length = 281 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 20/228 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS G+L L ++ + A+++D + ++V D + Sbjct: 36 GDKVMVCLSGGKDSYGMLDILMNLQRSAPVS-FELVAVNLD-QKQPGFPEQVLP--DFLA 91 Query: 79 RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + + ++ R + A+ I AT I H DD Sbjct: 92 QMDVPYYILEKDTYSIVKEVVPEGKTTCGLCSRLRRGSLYGFAQDIGATKIALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ + K M + D D + RP C+ +D+ ++ + Sbjct: 152 VETLFLNMFFGGSLKAMPPKLLSD----DKKNVVIRPMAYCKEKDLAAYAQYKEFPII-- 205 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N D +RV+V++ + + F +R + +A Sbjct: 206 PCNLCGSQDNLQRVQVKKMLLQWEREYPGRTETIFSSIRNVAPSQLAD 253 >gi|254453775|ref|ZP_05067212.1| hypothetical protein OA238_4396 [Octadecabacter antarcticus 238] gi|198268181|gb|EDY92451.1| hypothetical protein OA238_4396 [Octadecabacter antarcticus 238] Length = 321 Score = 85.3 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 19/234 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 IE P LV +SGG DS LL LH + R + A ++D Sbjct: 63 REAIEKYGMLDDRADRP-KWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVDLLACNLD--- 117 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAK 115 + + + + H + + + A R + A+ Sbjct: 118 QGQPNFPATILPKFLKDMGVPHRIEYQDTYSIVVDKIPMGRTMCALCSRLRRGNLYRIAR 177 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRR 174 + ++ H DD LET +M L+ M +L + L++ RP Sbjct: 178 EEGCSAVVLGHHRDDILETFFMNMFHGSR-----LAAMPPKLLNEQGDLFVFRPLAHVAE 232 Query: 175 EDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 E+ F D + D +R +++ + + ++ + K F L Sbjct: 233 ENCEKFSSSMGYPIIPCDLCGSQDGLQRQQIKAMLDQWETNSPGRRQKMFTALS 286 >gi|325929500|ref|ZP_08190622.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas perforans 91-118] gi|325540130|gb|EGD11750.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas perforans 91-118] Length = 298 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + ++V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 48 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+T T I H Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNT 195 P N Sbjct: 218 PII--PCNL 224 >gi|146278903|ref|YP_001169062.1| C32 tRNA thiolase [Rhodobacter sphaeroides ATCC 17025] gi|205830640|sp|A4WWJ3|TTCA_RHOS5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145557144|gb|ABP71757.1| PP-loop domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 292 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL AL + R ++ A ++D + + + Sbjct: 45 RDARWLVCLSGGKDSFTLLAALIEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 100 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ I H + + + R + A+ + I+ H DD Sbjct: 101 ARMGIPHRIEYQDTYSIVVDKIPQGRTYCSLCSRLRRGNLYRIAREEGCSAIVLGHHRDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + +L++ RP D F N Sbjct: 161 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAFVAEADCERFARSMN 211 >gi|163740287|ref|ZP_02147681.1| hypothetical protein RG210_09307 [Phaeobacter gallaeciensis 2.10] gi|161386145|gb|EDQ10520.1| hypothetical protein RG210_09307 [Phaeobacter gallaeciensis 2.10] Length = 295 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R LV +SGG DS LL L+ + R + A ++D + + Sbjct: 46 REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ + H + + A R + A+ + ++ H Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGH 161 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD LET +M G + + + +L++ RP D F N Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEVDCEKFAKALNY 217 Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + D +R +V++ + + ++ + F+ L Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258 >gi|317132000|ref|YP_004091314.1| PP-loop domain protein [Ethanoligenens harbinense YUAN-3] gi|315469979|gb|ADU26583.1| PP-loop domain protein [Ethanoligenens harbinense YUAN-3] Length = 274 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 16/193 (8%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDH 60 L I+S++ + + I V +SGG DSM + ++ ++ F+A + +D Sbjct: 21 LRFIQSIKDY-ELIKAGDRIAVCISGGKDSMCMAKCFQQLVP---HSEVPFTAEYLVMDP 76 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116 + R + D L + + K + + R + + A+ Sbjct: 77 GYNAANR---RRILDNAEALHVPIHLFETKIFDIVADVEHSPCYLCARMRRGYLYKKAQE 133 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + I AH FDD +ETV + K M + Y + + RP R D Sbjct: 134 LGCNKIALAHHFDDAIETVLLSMLYSGEIKTM--MPKLHSAHYP-GMELIRPMYLVREAD 190 Query: 177 IRSFLLQRNISWC 189 I ++ + + Sbjct: 191 IIAWRQYNGLQFI 203 >gi|149376348|ref|ZP_01894111.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter algicola DG893] gi|149359362|gb|EDM47823.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Marinobacter algicola DG893] Length = 303 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 15/176 (8%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSRLRI- 82 +SGG DS +L L ++ + + A+++D + +EV Y+S + I Sbjct: 56 LSGGKDSYAMLDILLNLQKSAPV-RFELIAVNLD-QKQPGFPEEVLPEYLSALGIEYHII 113 Query: 83 ---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +S+V K + +T R ++ A+ T I H DD LET+++ Sbjct: 114 EKDTYSIVKEKVPEGKT-TCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFLNM 172 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 K M D D + RP R +DI + R P N Sbjct: 173 FYGGKLKSMPPVLHSD----DGRNTVIRPLAYSREKDIARYARLREFPII--PCNL 222 >gi|300814739|ref|ZP_07094987.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511126|gb|EFK38378.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 276 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 22/199 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I++ + + + I VA+SGG DS+ L + + R I++D Sbjct: 26 FRKFIKACKEY-ELIQDGDKIAVAISGGKDSLTLAKLMQELKKHRQV-DFSLEFIAMDPG 83 Query: 62 -LRETAKDEVRYVSDV---CSRLRIA---HSVVSWKNSKP---QTGLMAAAREARYALIS 111 ++E + ++ C +L I + ++ ++ R + Sbjct: 84 YIKENSD-------NLLYNCKKLGIPVKLYKSDIFEVAEKLTNGDSPCYMCARMRRGNLY 136 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 AK + + H F+D +ET+ + + + + D+ + RP Sbjct: 137 SKAKELGCNKLALGHHFNDVIETILLNII-FAGDYKTMMPKLKAKNFSDM--ELIRPMYL 193 Query: 172 CRREDIRSFLLQRNISWCE 190 + E I F+ ++ + Sbjct: 194 VKEEAIIRFMKSTGLNPLD 212 >gi|289423511|ref|ZP_06425312.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L] gi|289156013|gb|EFD04677.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L] Length = 299 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 22/178 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HCLRETAKDEVRYV 73 I VA+SGG DSM + + + + F + + H + + + Sbjct: 62 GDKIAVAISGGKDSMLMAKMFQEL---KRHSPVNFEVVYLAMDPGYH----DSIR--KLL 112 Query: 74 SDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128 D C L I ++ + R + A+ + + H F Sbjct: 113 EDNCEYLDIPLVTFDSQIFEVADRIASDYPCYMCARMRRGALYGKAEELGCNKLALGHHF 172 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD +ET + L + T + + RP R EDI ++ I Sbjct: 173 DDVIETTMLNVL-CAGNFKTMLPKLKSTNF--EGIELIRPLYYIREEDIIRWMTYTGI 227 >gi|289668514|ref|ZP_06489589.1| PP-loop family ATPase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 22/248 (8%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + I+V +SGG DS LL L + + F+ ++V+ L + D + Sbjct: 45 FSMIAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAH 99 Query: 73 VS-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMT 124 V L + +V + + R + +A+T T I Sbjct: 100 VLPAYLRGLGVPFDIVEQDTYSVVSRLIPAGKTMCSLCSRLRRGALYAYAQTHGVTKITL 159 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD + T +M L+ M + D + RP R DI ++ Sbjct: 160 GHHRDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQA 214 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 R P N + R+ V + + + + + + + + + Sbjct: 215 RQFPII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRML 271 Query: 244 VHMRSIIA 251 ++ Sbjct: 272 FDFLALGR 279 >gi|307264980|ref|ZP_07546541.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919965|gb|EFN50178.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 300 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 22/201 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L ++ + F + +LV VSGG DSM L L A+ ++ + Sbjct: 35 LKNVQKNKMFKKD----DRVLVVVSGGKDSMALWDVLAK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + + + V + K + + + L ++ Sbjct: 84 GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A ++I T H DD++ T+ ++ E + G + + +PF Sbjct: 144 VAYDNGFSVIATGHNLDDEVATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPFYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++ ++L I + + Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223 >gi|205830647|sp|Q3BMF4|TTCA_XANC5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 305 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + ++V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 48 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+T T I H Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217 Query: 187 SWCEDPSNT 195 P N Sbjct: 218 PII--PCNL 224 >gi|284048673|ref|YP_003399012.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731] gi|283952894|gb|ADB47697.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731] Length = 391 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 11/178 (6%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DSM + + + +D + + + + Sbjct: 149 IQPGDKIAVCISGGKDSMLMAKLFQDLKRHNKIP-FDLVFLCMDPGYNAMNR---KIIEE 204 Query: 76 VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L++ + S + + + R + A+ + I H FDD Sbjct: 205 NAKLLQVPLTFFSTEIFEAVFHVEDSPCYLCAKMRRGYLYRKARELGCNKIALGHHFDDV 264 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET M A + M L + T + + RP R EDI+S+ + + + Sbjct: 265 IETNLMSMLYSGAIRTM-LPRLKSTSCP--GMELIRPLYYVREEDIKSWRDENGLYFI 319 >gi|29654375|ref|NP_820067.1| PP-loop family protein [Coxiella burnetii RSA 493] gi|81628995|sp|Q83CP2|TTCA_COXBU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|29541642|gb|AAO90581.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii RSA 493] Length = 256 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 22 RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77 Query: 74 SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +I + +++ + R +I +A+ + I H Sbjct: 78 RGWLDDKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++T+ M + + S + + + RP C+ DI + +++ Sbjct: 138 HRDDLIQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQF 193 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N D ++ +R+ V+ + K ++ ++N + + + Sbjct: 194 PLI--PCNLCDS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNF 250 Query: 247 RSI 249 R + Sbjct: 251 REL 253 >gi|270157460|ref|ZP_06186117.1| PP-loop family protein [Legionella longbeachae D-4968] gi|289164149|ref|YP_003454287.1| C32 tRNA thiolase [Legionella longbeachae NSW150] gi|269989485|gb|EEZ95739.1| PP-loop family protein [Legionella longbeachae D-4968] gi|288857322|emb|CBJ11149.1| putative C32 tRNA thiolase [Legionella longbeachae NSW150] Length = 280 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 21/228 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L+ + RS K + + ++D + D + Sbjct: 25 IQRGDRVMVCLSGGKDSFTLLTILNQLRR-RSGNKFELFSFTLD-QAQPGWNDSA--LRQ 80 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 I H +++ + R +I +A+ I H Sbjct: 81 WLKERSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 140 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + DI ++ ++ Sbjct: 141 DDLVRTLMMSIFYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQENDIITYAQEQAYP 195 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 P N + +R+ V + + L + K + ++ Sbjct: 196 II--PCNLCGS-QENLMRKKVARL-IDQLAEENPKVPSNILHALQSIK 239 >gi|257451991|ref|ZP_05617290.1| PP family ATPase [Fusobacterium sp. 3_1_5R] gi|317058540|ref|ZP_07923025.1| PP family ATPase [Fusobacterium sp. 3_1_5R] gi|313684216|gb|EFS21051.1| PP family ATPase [Fusobacterium sp. 3_1_5R] Length = 262 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 16/190 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ F L+ I V VSGG DS+ L + DRS IS++ Sbjct: 22 KFVKAVQDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFDLQFISMNPGF 78 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTI 117 A D ++ ++ L I ++ + + R ++ + + + Sbjct: 79 --EAMDIDKFEQNL-KDLEIDCTIFDANVWQVAFDQDPESPCFLCAKMRRGVLYKKVEEL 135 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + K + + L I RP + + +DI Sbjct: 136 GCNKLALGHHFDDVIETTMINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191 Query: 178 RSFLLQRNIS 187 +SF+ I Sbjct: 192 KSFMKSNEIE 201 >gi|282881884|ref|ZP_06290535.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus lacrimalis 315-B] gi|281298293|gb|EFA90738.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus lacrimalis 315-B] Length = 277 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 22/199 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I++ + + + I VA+SGG DS+ L + + R I++D Sbjct: 27 FRKFIKACKEY-ELIQDGDKIAVAISGGKDSLTLAKLMQELKRHRQV-DFSLEFIAMDPG 84 Query: 62 -LRETAKDEVRYVSDV---CSRLRIA---HSVVSWKNSKP---QTGLMAAAREARYALIS 111 ++E + ++ C +L I + ++ ++ R + Sbjct: 85 YIKENSD-------NLLYNCKKLGIPVKLYKSDIFEVAEKLTNGDSPCYMCARMRRGNLY 137 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 AK + + H F+D +ET+ + +A + + ++ + RP Sbjct: 138 SKAKELGCNKLALGHHFNDVIETILLNII--FAGDYKTMMPKLKAQNF-SDMELIRPMYL 194 Query: 172 CRREDIRSFLLQRNISWCE 190 + E I F+ ++ + Sbjct: 195 VKEEAIIRFMKSTGLNPLD 213 >gi|157145670|ref|YP_001452989.1| C32 tRNA thiolase [Citrobacter koseri ATCC BAA-895] gi|205830573|sp|A8AGE0|TTCA_CITK8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157082875|gb|ABV12553.1| hypothetical protein CKO_01418 [Citrobacter koseri ATCC BAA-895] Length = 311 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPEYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + ++ Sbjct: 198 RFSEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + L D + Sbjct: 256 DINLFDFKGINHDSDVVDGGDLAFDREEI 284 >gi|326390081|ref|ZP_08211643.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993946|gb|EGD52376.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 300 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 22/201 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I+ + F + +LV VSGG DSM L L A+ ++ + Sbjct: 35 LKNIQKNKMFKKD----DRVLVVVSGGKDSMALWDVLAK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + + + V + K + + + L ++ Sbjct: 84 GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A ++I T H DD++ T+ ++ E + G + + +P Sbjct: 144 VAYDNGFSVIATGHNLDDEVATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++ ++L I + + Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223 >gi|167039805|ref|YP_001662790.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514] gi|300915540|ref|ZP_07132850.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307724869|ref|YP_003904620.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513] gi|166854045|gb|ABY92454.1| PP-loop domain protein [Thermoanaerobacter sp. X514] gi|300888404|gb|EFK83556.1| PP-loop domain protein [Thermoanaerobacter sp. X561] gi|307581930|gb|ADN55329.1| PP-loop domain protein [Thermoanaerobacter sp. X513] Length = 300 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 22/201 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I+ + F + +LV VSGG DSM L L A+ ++ + Sbjct: 35 LKNIQKNKMFKKD----DRVLVVVSGGKDSMALWDVLVK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + + + V + K + + + L ++ Sbjct: 84 GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A ++I T H DD+ T+ ++ E + G + + +P Sbjct: 144 VAYDNGFSVIATGHNLDDEAATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++ ++L I + + Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223 >gi|94499113|ref|ZP_01305651.1| putative ATPase [Oceanobacter sp. RED65] gi|94428745|gb|EAT13717.1| putative ATPase [Oceanobacter sp. RED65] Length = 321 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 24/230 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ + A+++D + +V + Sbjct: 51 GDRIMVCLSGGKDSYTMLDILQNLQKSAPVS-FELVAVNLD-QKQPG---FPEHVLPEYL 105 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L I + +V+ R + A+ I A + H DD Sbjct: 106 DSLDIEYYIVNRDTYSVVKEKVPEGRTTCGLCSRLRRGTLYGFAEDIGANKVALGHHRDD 165 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ G L+ M +L D I RP C+ DI +F + Sbjct: 166 IVETMFLNMF-----YGARLAAMPPKLLSDDKRNIVIRPMAYCKESDIAAFSEYKQFPII 220 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ + D + F ++ + +A Sbjct: 221 --PCNLCGSQENLQRQNIKAMLEQWDKEHPGRIQQIFNSMQNIAPSQMAD 268 >gi|73539933|ref|YP_294453.1| PP-loop [Ralstonia eutropha JMP134] gi|123626023|sp|Q476S4|TTCA_RALEJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|72117346|gb|AAZ59609.1| PP-loop [Ralstonia eutropha JMP134] Length = 312 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 92/277 (33%), Gaps = 24/277 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80 +LV +SGG DS +L L ++ R+ + K A+++D + +V + Sbjct: 34 VLVCMSGGKDSYTMLSVLMALQK-RAPIQFKLIAMNLD-QKQPG---FPEHVLPEYLKST 88 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V + R +I AK + A I H DD + Sbjct: 89 GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192 T ++ G + M + D I RP C +DI ++ P Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGAHIVIRPLAYCSEKDIAAYARAMEFPII--P 201 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 N + +R +V ++ + F LR V + +A T + Sbjct: 202 CNLCGSQENLQRKKVSEMLQAWERENPGRIDNIFASLRNVVPSHLADTDLFPFTGLATGL 261 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286 + + L ++T L + + ++ + Sbjct: 262 AKVDEASLFGETTFTQQPLVFAGSSDENRLEFVRFER 298 >gi|257439082|ref|ZP_05614837.1| PP-loop family protein [Faecalibacterium prausnitzii A2-165] gi|257198460|gb|EEU96744.1| PP-loop family protein [Faecalibacterium prausnitzii A2-165] Length = 284 Score = 85.0 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 27/194 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72 I V +SGG DSM + + + + + +D E + E+ Sbjct: 40 GDKIAVCISGGKDSMLMAKLMQELQKHSDVP-FELVFLVMDPGYNEINRQKIESNAEL-- 96 Query: 73 VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 L I ++ + + R + AK + I H F Sbjct: 97 -------LHIPVTIFESNIFSVANNTEKNPCYLCARMRRGHLYSKAKELGCNKIALGHHF 149 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D +ET M + M + + + RP R EDI ++ ++ + Sbjct: 150 NDVIETTVMSMFYGSQMQAMPPKLHSTSFP---GMTLIRPMYCIREEDILAWKRYNDLEF 206 Query: 189 CEDPSNTDDRFERV 202 + RF Sbjct: 207 IQCAC----RFTEN 216 >gi|205830646|sp|Q16A99|TTCA_ROSDO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 274 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL L+ + R ++ A ++D + + + Sbjct: 44 KDARWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + H V + L A R + A+ + ++ H DD Sbjct: 100 KKMEVPHRVEYQDTYSIVMDKVPQGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + +L++ RP D F Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVSEADCDRFSTAMG 210 >gi|150396724|ref|YP_001327191.1| C32 tRNA thiolase [Sinorhizobium medicae WSM419] gi|205830634|sp|A6U9M6|TTCA_SINMW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150028239|gb|ABR60356.1| PP-loop domain protein [Sinorhizobium medicae WSM419] Length = 293 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 79/239 (33%), Gaps = 29/239 (12%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59 + VR + L LV VSGG DS LL L + R ++ A ++D Sbjct: 45 RLLRQVRQALDDFGMLKGSKRWLVGVSGGKDSYSLLALLMDL-KWRGLLPVELVACNLDQ 103 Query: 60 -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108 H L Y+ + R RI + +V K T + R Sbjct: 104 GQPNFPKHVL-------PDYLQSIGVRHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 155 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + A+ ++ H +D LET +M G S + + +L + RP Sbjct: 156 NLYRIAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRP 211 Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +DI F D + D ER ++ + DI+ K + L Sbjct: 212 LAYAAEDDIAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLSDIERRMPGRKDTMLRAL 270 >gi|86135818|ref|ZP_01054397.1| hypothetical protein MED193_16884 [Roseobacter sp. MED193] gi|85826692|gb|EAQ46888.1| hypothetical protein MED193_16884 [Roseobacter sp. MED193] Length = 295 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 19/254 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL LH + R + A ++D + + ++ Sbjct: 53 KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPAFLEKM 108 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + + A R + A+ + ++ H DD LE Sbjct: 109 GVEHRIEYQDTYSIVMDKVPEGRTFCALCSRLRRGNLYRVAREEGCSAVILGHHRDDILE 168 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 T +M G + + + +L++ RP D F + D Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEVDCEKFAKAMDYPIIPCDL 224 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252 + D +R +V++ + + ++ + F R N + L+ L I Sbjct: 225 CGSQDGLQRQQVKQILDQWEANSPGRRQVMF---RALTNARPSHLLDPKLFDFAGLERKI 281 Query: 253 SQDILNIDSTLLFY 266 S + + D L Sbjct: 282 SAESADSDEIPLLR 295 >gi|127512923|ref|YP_001094120.1| PP-loop domain-containing protein [Shewanella loihica PV-4] gi|205830628|sp|A3QEG3|TTCA_SHELP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|126638218|gb|ABO23861.1| PP-loop domain protein [Shewanella loihica PV-4] Length = 317 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 22/200 (11%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++L R+ A+++D + +++ L++ + Sbjct: 45 LSGGKDSYAMLDILVNLL-QRAPVNFNLVAVNLD-QKQPGFPEDILPA--YLDSLKVPYH 100 Query: 86 VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 101 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 160 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 L M +L D + RP R +DI + + P N Sbjct: 161 MFYAGK-----LKAMPPKLLSDDGANVVIRPLAYSREKDIAEYAELKAFPII--PCNLCG 213 Query: 196 -DDRFERVRVRRFVRDIDLH 214 + +R V+ ++ D Sbjct: 214 SQENLKRAAVKEMLKSWDKQ 233 >gi|256831234|ref|YP_003159962.1| PP-loop domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256580410|gb|ACU91546.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028] Length = 249 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 19/220 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDV 76 A I +AVSGG DS +L + ++ R ++ I ++ ET+ ++D Sbjct: 30 PGARIGLAVSGGIDSWVMLQVM--IMRQRIIPFPVELFVIHLNPGFDETSH---APLADW 84 Query: 77 CSRLRIAHSVVSWKNSKPQTGLMAA--------AREARYALISEHAKTINATLIMTAHTF 128 + + + A R + N T + H Sbjct: 85 MRAHGVPGHLETTDFGPRAHSAENRKKSPCFFCAWHRRKRFFD-ICRQYNLTHLALGHNT 143 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD + T +M + G+ + + L + RP L + I Q + Sbjct: 144 DDLVSTFFMNMLKTGKIYGL----VPKESYFGGKLTLIRPLLLLDKATITQACRQWKLPV 199 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 E+ + D+ R + + ++ F LR Sbjct: 200 WENDCPSKDKTARSQTLNQALALCGGDKRIRTNMFNALRR 239 >gi|212635383|ref|YP_002311908.1| C32 tRNA thiolase [Shewanella piezotolerans WP3] gi|212556867|gb|ACJ29321.1| ATPase of the PP-loop [Shewanella piezotolerans WP3] Length = 280 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 17/177 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K + A+++D + +E+ +L +A+ Sbjct: 12 LSGGKDSYAMLDILVNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEILPA--YLDKLGVAYH 67 Query: 86 VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 68 ILEKDTYSIVRDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFLN 127 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + + D + RP R +DI + + P N Sbjct: 128 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKQFPII--PCNL 178 >gi|159905700|ref|YP_001549362.1| PP-loop domain-containing protein [Methanococcus maripaludis C6] gi|159887193|gb|ABX02130.1| PP-loop domain protein [Methanococcus maripaludis C6] Length = 311 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 20/168 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 + + +SGG DS+ + L+ + K AI V+ + D + C Sbjct: 48 RVAMGLSGGKDSLVMAYILNEFY--KQIPNSKIIAIIVNEGIEGYRTDGIDAAIKFCEEH 105 Query: 81 RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 I + +V +K+ + R +++ + + Sbjct: 106 NIEYKIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSLEEKCDFLAIG 165 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 H DD + V M +K L+ + ++ + + +P + Sbjct: 166 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIP 210 >gi|20808825|ref|NP_623996.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|254478816|ref|ZP_05092183.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] gi|20517476|gb|AAM25600.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] gi|214035271|gb|EEB75978.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] Length = 300 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 22/201 (10%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I+ + F + +LV VSGG DSM L L A+ ++ + Sbjct: 35 LKNIQKNKMFKKD----DKVLVVVSGGKDSMALWDVLVK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + + + V + K + + + L ++ Sbjct: 84 GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A ++I T H DD+ T+ ++ E + G + + +P Sbjct: 144 VAYDNGFSVIATGHNLDDEAATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPS 193 ++ ++L I + + Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223 >gi|298528399|ref|ZP_07015803.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512051|gb|EFI35953.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 248 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 14/184 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L A + +AVSGG DS L L + + + V+ + + D Sbjct: 28 LWPGARVGIAVSGGVDSWVLARVLM-IRQKIVPFYFEIILLHVNPGFDPGNH---QPLVD 83 Query: 76 VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + S N +R ++ + + + T + H + Sbjct: 84 WLGANPLPGHIQSTDIGPRAHNPGNTKSPCFLCSWSRRKVLFDLCRKYSLTHLALGHNAE 143 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D T +M + G+ + +L + RP L ++ IR+ + + Sbjct: 144 DLAATFFMNLIQTSRVDGLS----AREEFFQGSLTLIRPLLLVEKKYIRNAARRWELPVW 199 Query: 190 EDPS 193 E+P Sbjct: 200 ENPC 203 >gi|320120350|gb|EFE28381.2| PP-loop family protein [Filifactor alocis ATCC 35896] Length = 276 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 26/246 (10%) Query: 1 MFLSPIESVRF-----FVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49 M + I+ R F+R+++ I +A+SGG DS+ + + + Sbjct: 14 MERALIKKFRKYLWSPFIRAIIDFEMIQQNDRIAIAISGGKDSLVMAKLMQELYRHSDIP 73 Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAARE 104 IS++ + +E +++ C + I + S + Sbjct: 74 FEPVF-ISMNPGFSKE--NESSLIAN-CKAMDIPVHFFQSDIFEVTTSIAKENPCYMCAR 129 Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164 R + A+ + + H F+D ET M L + T N+ Sbjct: 130 MRRGALYGKAEELGCNKLALGHHFNDVNETTIMNLL-YTGCFKTMLPKLKSTNF--NNME 186 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCED---PSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 I RP E I ++ I + + + +R ++ + + + ++ Sbjct: 187 IIRPLYYVYEEHIHKYMNYIQIFPMDCGCTVTKNEVSSKRKEIKNLIATLKIQNPNVEKC 246 Query: 222 KFQDLR 227 F+ ++ Sbjct: 247 IFKSIQ 252 >gi|332528301|ref|ZP_08404303.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Hylemonella gracilis ATCC 19624] gi|332042246|gb|EGI78570.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Hylemonella gracilis ATCC 19624] Length = 314 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 17/175 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS G+L L + S R+ K A+++D + D + Sbjct: 51 GDRVMVCMSGGKDSYGMLDILMKLQS-RAPVKFTLVAVNLD-QKQPGFPD--HILPAYLK 106 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L I + + KN + + R ++ A+ + + H DD Sbjct: 107 ELGIEFHIETQDTYSIVKKNIPEGKTMCSLCSRLRRGILYRVARELKCNKLALGHHRDDM 166 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 L+T ++ G L GM ++ D +I RP +D+ + R Sbjct: 167 LQTFFLNMF-----FGGKLKGMPPKLVSDNGEFIVIRPLAYVAEKDLIRWAAHRQ 216 >gi|261339969|ref|ZP_05967827.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316] gi|288317886|gb|EFC56824.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316] Length = 311 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + +A Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTELFDFKGINHDSDVVDGGDLAFDREEI 284 >gi|254487850|ref|ZP_05101055.1| hypothetical protein RGAI101_2509 [Roseobacter sp. GAI101] gi|214044719|gb|EEB85357.1| hypothetical protein RGAI101_2509 [Roseobacter sp. GAI101] Length = 275 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75 LV +SGG DS LL LH + R ++ A ++D + V ++ Sbjct: 44 PGGKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVEILACNLDQG-QPNFPATVLPEFLEK 101 Query: 76 VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + RI + + A R + A+ T ++ H DD L Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPSGRTFCALCSRLRRGNLYRIAREEGCTAVVLGHHRDDIL 161 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET +M G + + + +L++ RP D F N Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEIDCEKFSKAMN 210 >gi|78049884|ref|YP_366059.1| C32 tRNA thiolase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038314|emb|CAJ26059.1| putative PP-loop family ATPase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 369 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + ++V +SGG DS LL L + + FS ++V+ L + D +V Sbjct: 112 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 166 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+T T I H Sbjct: 167 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 226 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 227 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 281 Query: 187 SWCEDPSNT 195 P N Sbjct: 282 PII--PCNL 288 >gi|114765429|ref|ZP_01444544.1| hypothetical protein 1100011001294_R2601_17232 [Pelagibaca bermudensis HTCC2601] gi|114542272|gb|EAU45302.1| hypothetical protein R2601_17232 [Roseovarius sp. HTCC2601] Length = 328 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 16/214 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL LH + R ++ A ++D + + + Sbjct: 86 KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPKFLEDM 141 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 ++ H + + A R + A+ + ++ H DD LE Sbjct: 142 QVPHRIEYQDTYSIVVDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 201 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 T +M G + + + +L++ RP D F N D Sbjct: 202 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEVDCEKFARAMNYPIIPCDL 257 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R +V++ + + ++ + F+ L Sbjct: 258 CGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRSL 291 >gi|222054017|ref|YP_002536379.1| PP-loop domain protein [Geobacter sp. FRC-32] gi|254790131|sp|B9M1Y2|TTCA_GEOSF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|221563306|gb|ACM19278.1| PP-loop domain protein [Geobacter sp. FRC-32] Length = 252 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 17/174 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V VSGG DS LL L ++ R+ + + AI++D D + + Sbjct: 29 GDRIAVGVSGGKDSYTLLHMLDTLRR-RAPVRYEVVAINIDSGYPGFRAD---IIEEHLH 84 Query: 79 RLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 H + + + + + + + A+ N + H DD Sbjct: 85 ENGFTVHMEKTDHYGIIKEKRRLDSSYCSICARLKRGALYALAQQHNCNKLALGHHMDDF 144 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQR 184 +ET+ + A L M +L D L + RP + EDI F Sbjct: 145 IETLLLNQFFVGA-----LKAMAPGMLADNGLTTVIRPLVYVSEEDIIQFSRNN 193 >gi|329577263|gb|EGG58727.1| PP-loop family protein [Enterococcus faecalis TX1467] Length = 119 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 17 VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 I+VAVSGG DSM LL + V +++ V+H LRE + E +Y++ Sbjct: 51 QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107 Query: 77 CSRLRIAHS 85 C + + + Sbjct: 108 CQQRELTYY 116 >gi|110678773|ref|YP_681780.1| hypothetical protein RD1_1457 [Roseobacter denitrificans OCh 114] gi|109454889|gb|ABG31094.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114] Length = 309 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL L+ + R ++ A ++D + + + Sbjct: 79 KDARWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 134 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ + H V + L A R + A+ + ++ H DD Sbjct: 135 KKMEVPHRVEYQDTYSIVMDKVPQGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 194 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + +L++ RP D F Sbjct: 195 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVSEADCDRFSTAMG 245 >gi|254475553|ref|ZP_05088939.1| hypothetical protein RR11_1391 [Ruegeria sp. R11] gi|214029796|gb|EEB70631.1| hypothetical protein RR11_1391 [Ruegeria sp. R11] Length = 295 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 15/177 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R+ LV +SGG DS LL L+ + R + A ++D + + Sbjct: 46 RADGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + ++ + H + + A R + A+ + ++ H Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 161 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 DD LET +M G + + + +L++ RP D F Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARA 214 >gi|291279007|ref|YP_003495842.1| hypothetical protein DEFDS_0604 [Deferribacter desulfuricans SSM1] gi|290753709|dbj|BAI80086.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1] Length = 300 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 27/209 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ +E R ILV VSGG DS+ L + L + + + ++ Sbjct: 30 FIRQVEKAIKEFRMFSRKDKILVCVSGGKDSLVLWLVLSKL-------GYNVTGMYINLG 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVV------------SWKNSKPQTGLMAAAREARYAL 109 + E ++ V + + + +++V S K+ +P+ + RY Sbjct: 83 IDEYSEKSKTKVINFAEKNNLKYTIVDLNELGYPIPELSKKSRRPECSVCGT--VKRY-Y 139 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167 ++ A N ++ T H DD+ + E L + + + + Sbjct: 140 FNKIAYDYNFDVVATGHNLDDEASRLLGNILHWNDEY---LEKQLPVLPAEGKMLKKKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTD 196 P +R ++I SF + + D Sbjct: 197 PLIRLTEQEIASFAFLNKVDYILDECPLS 225 >gi|90407731|ref|ZP_01215910.1| putative ATPase [Psychromonas sp. CNPT3] gi|90311200|gb|EAS39306.1| putative ATPase [Psychromonas sp. CNPT3] Length = 208 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L + R+ I F I+++ L + +V Sbjct: 37 GDRIMVCLSGGKDSFTMLDILLEL---RAAAPINFDIIAIN--LDQKQPGFPEHVLPQYL 91 Query: 78 SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + L + + ++ + + + R ++ AK + AT I H DD Sbjct: 92 TALGVEYRIIEENTYAIVKEKIEEGKTTCSLCSRLRRGILYRTAKEVGATKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185 L T+ + + L M ++ D I RP C+ ++I ++ + Sbjct: 152 MLATMMLNMFFNGK-----LKSMPPKLVSDNGEHVIIRPLAYCKEKEIEAYARLKK 202 >gi|188574631|ref|YP_001911560.1| ATPase of the PP-loop superfamily [Xanthomonas oryzae pv. oryzae PXO99A] gi|205830642|sp|B2SIG7|TTCA_XANOP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|188519083|gb|ACD57028.1| ATPase of the PP-loop superfamily [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 77/243 (31%), Gaps = 22/243 (9%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 I+V +SGG DS +L L + + F+ ++V+ L + D +V Sbjct: 50 PGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLPAY 104 Query: 77 CSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + +V + + + R + +A+T T I H D Sbjct: 105 LDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHHRD 164 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T +M L+ M + D + RP R I ++ R Sbjct: 165 DIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREAHIAAYAQARQFPI 219 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N + R+ V + + + + + + + + + + Sbjct: 220 I--PCNLCGS-QENLQRQQVGKMLQQWDHEQPGRVEQIARALGDVRPEQLADRTLFDFLA 276 Query: 249 IIA 251 + Sbjct: 277 LGR 279 >gi|319779066|ref|YP_004129979.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Taylorella equigenitalis MCE9] gi|317109090|gb|ADU91836.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Taylorella equigenitalis MCE9] Length = 293 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L +L +R+ K + A+++D + +V + Sbjct: 26 GDRVMVCLSGGKDSYTLLEVL-RILQNRAPIKFELVAVNLD-QKQPG---FPEHVLPEYL 80 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + + + + R ++ + + T I H DD Sbjct: 81 ESIGVPYHIENQDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVSDELGCTKIALGHHRDD 140 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L T ++ L M ++ D + RP +DI + Q+ Sbjct: 141 ILATFFLNLF-----YAAKLKTMPPKLVSDDGKHMVIRPLAFVAEKDIILYAKQKAFPII 195 Query: 190 EDPSNT 195 P N Sbjct: 196 --PCNL 199 >gi|254798694|ref|YP_003058278.1| tRNA-Ile lysidine synthase [Parachlorella kessleri] gi|229915642|gb|ACQ90985.1| tRNA-Ile lysidine synthase [Parachlorella kessleri] Length = 502 Score = 84.6 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 7/138 (5%) Query: 11 FFVRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69 ++ + P I + SGG DS+ L I L + + I+ A+ H +E Sbjct: 12 LLQKTKINPHDICICGFSGGQDSVLLFIILLHLKKQWN---IQIQALHFHHFWQEKNFFS 68 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + +I +++ S+ AR R + + + I+T HT Sbjct: 69 TYQVWKLNFVFKIPFYLIT---SEIFLETEKTARHWRQKGLERISNLEKSNKILTGHTAS 125 Query: 130 DQLETVYMRSQRDYAEKG 147 D++ET R + +G Sbjct: 126 DRIETALWHLIRGTSPQG 143 Score = 60.7 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%) Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKM 220 + RP L R DI F + + DPSN R+ R R+R + + + Sbjct: 364 LLRPLLALHRNDIIFFSKKYLLPIVCDPSNEKLRWSRNRIRHQLFPLLRIFFNPNTEYLL 423 Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLL 268 + ++ ++ + LI K + ++ I + + LL Sbjct: 424 SNYLEISIEEQKYIEYLIQKIIKYWLKKYKNDSDIKSQLQFFPKAIQRRLL 474 >gi|254514173|ref|ZP_05126234.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR5-3] gi|219676416|gb|EED32781.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR5-3] Length = 281 Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 23/243 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I+V +SGG DS +L L S+ + A+ +D ++ + + Sbjct: 38 RIMVCLSGGKDSYAMLDILQSLQRSAPV-NFELIAVHMD---QKQPGYPPEILPAYLDKQ 93 Query: 81 RIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + ++ + R + A++I AT I H DD +E Sbjct: 94 NIEYHILEKDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAESIGATRIALGHHRDDIVE 153 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+++ G L M +L D + RP C+ D+ + P Sbjct: 154 TLFLNMF-----FGGSLKAMPPKLLSDDGKNVVIRPMAYCKEADLERYAQAMEFPII--P 206 Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLIPKYLTVHMRS 248 N D +R +++ + D + F+ + V + + +L+++ Sbjct: 207 CNLCGSQDNLQRQAIKKMLLDWERQYPGRTETIFKAIGNVSPSQLADRELFDFLSLNAAE 266 Query: 249 IIA 251 +A Sbjct: 267 PVA 269 >gi|152979071|ref|YP_001344700.1| PP-loop domain-containing protein [Actinobacillus succinogenes 130Z] gi|205830592|sp|A6VP68|TTCA_ACTSZ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150840794|gb|ABR74765.1| PP-loop domain protein [Actinobacillus succinogenes 130Z] Length = 312 Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 24/244 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ A+++D + +V Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLKFSAPI-HFDIVAVNLD-QKQPG---FPEHVLPQYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP C+ +DI + + + Sbjct: 154 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 208 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N +R V+ + D F ++ V + + Sbjct: 209 --PCNLCGSQPNLQRQVVKEMLNTWDRQYPGRLETMFSAMQNVVPSHLCDPNLFDFKNIR 266 Query: 247 RSII 250 R I Sbjct: 267 RGQI 270 >gi|83941454|ref|ZP_00953916.1| ATPase of the PP superfamily protein [Sulfitobacter sp. EE-36] gi|83847274|gb|EAP85149.1| ATPase of the PP superfamily protein [Sulfitobacter sp. EE-36] Length = 275 Score = 84.2 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75 LV +SGG DS LL LH + R ++ A ++D + V ++ Sbjct: 44 PGGKWLVCMSGGKDSYTLLAILHELQ-WRGLLPVELVACNLDQG-QPNFPATVLPAFLEK 101 Query: 76 VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + RI + + A R + A+ T ++ H DD L Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGHLYRIAREEGCTAVVLGHHRDDIL 161 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET +M G + + + +L++ RP D F N Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFSTAMN 210 >gi|254490506|ref|ZP_05103692.1| hypothetical protein MDMS009_838 [Methylophaga thiooxidans DMS010] gi|224464250|gb|EEF80513.1| hypothetical protein MDMS009_838 [Methylophaga thiooxydans DMS010] Length = 288 Score = 84.2 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 22/230 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ R I F I+V+ L + +V + Sbjct: 37 GDKVMVCLSGGKDSYTMLDILINL---RDHAPINFELIAVN--LDQKQPGFPEHVLPEYL 91 Query: 78 SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + ++ R + +A+ T I H DD Sbjct: 92 ASIGVPYHIIEKDTYSIVKEVVPEGKTTCGICSRLRRGSLYGYARQNGITKIALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ K M + D D + RP + DI + Sbjct: 152 IIETLFLNMFYGSKIKAMPPKLLSD----DKTNIVIRPLCYAKESDIVKYSDAMQFPII- 206 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 P N + +R ++ ++ + F+ ++ + +A L Sbjct: 207 -PCNLCGSQENLQRQVIKDMLQGWEKEHPGRLENIFRSIQNLSPSQLADL 255 >gi|206900215|ref|YP_002251379.1| Veg136 protein [Dictyoglomus thermophilum H-6-12] gi|206739318|gb|ACI18376.1| Veg136 protein [Dictyoglomus thermophilum H-6-12] Length = 318 Score = 84.2 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 35/216 (16%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F ++ ILVAVSGG DS+ L L+S+ + I + Sbjct: 36 KAIKKYKMFEKT----DKILVAVSGGKDSLALWDILNSLGYNSDGLYIDL-------GIS 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------ARYALIS 111 E ++ + VVS K+ G+ A + RY +++ Sbjct: 85 EYSEKSKEVAQKFAESRNLKLHVVSIKDI-YGVGIKEIAHKNRKPPCSTCGVIKRY-IMN 142 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPF 169 AK + +I T H DD E+ + + L + D +P Sbjct: 143 LTAKELQYKVIATGHNLDD--ESAIL-LGNILHWQIDYLKAQSPILFEDEAGFARKVKPL 199 Query: 170 LRCRREDIRSFLLQRNISWCEDPSN-----TDDRFE 200 R + ++ + + I + D R++ Sbjct: 200 YRISEYETSAYCIMKKIEYILDECPMSIDAQSLRYK 235 >gi|223995303|ref|XP_002287335.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976451|gb|EED94778.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 492 Score = 84.2 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 30/240 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I + +L+ +SGG DS+ LL L K + ++D Sbjct: 136 MMKFITQAMIQWEMIQEGDKLLLGLSGGKDSLSLLHCLLEFQRKLP-TKFEIEVCTIDPM 194 Query: 62 --------LRETAKDEVRYVSDVCSRLR------IAHSVVSWKNSKPQTGLMAAAREARY 107 L + YV + + +A + S K+ + L + + Sbjct: 195 TPSFDPSPL-------IPYVESLGLKYHYIRDDIVARANTSGKDGSTVSSLCSFCARMKR 247 Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167 + A+ N ++ A DD E+ M + + + + + ++ + R Sbjct: 248 GNLYTCARKNNCNKLVLAQHLDDCAESFLMSVMHNGFVR----TMKANYKINAGDVSVIR 303 Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL--HALYLKMKKF 223 P + CR + F N+ P+ ++ ER R+++ + + LY +++ Sbjct: 304 PLVYCRESLMTDFAKSNNLPVINENCPACFEEPKERARIKKLLSREETLYPNLYDHIRRA 363 >gi|124516144|gb|EAY57652.1| probable ATPase, PP-loop superfamily protein [Leptospirillum rubarum] Length = 307 Score = 84.2 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 26/240 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ILVAVSGG DS+ L L+ + + + +D + + + + Sbjct: 46 KNDRILVAVSGGKDSLALWDILNRL-------GYRTTGFHLDLGIGGYSGESLEKTRAFA 98 Query: 78 SRLRIAHSVVSWKNSKPQT----------GLMAAAREARYALISEHAKTINATLIMTAHT 127 R + V S + +A ++ L + A+ + ++ T H Sbjct: 99 LRYGLTLHVESLVQEVGASVANIAELTNRPPCSACGVSKRHLFNRAAQKLECQVVATGHN 158 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRN 185 DD+ R + G + L D + +P R +++ ++ + Sbjct: 159 LDDEAS----RLLGNILHWQDGYLEKQNPALPDEGGLVRKVKPLNRLTEKEMAAYAFLKG 214 Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLIPKYL 242 I++ +++ ++ + ++ + K F D R + A P YL Sbjct: 215 INYVVHECPMSVNAKQLFYKKIMNQVEQESPGTKQAFYFGFLDRRSRFYPEKAEEAPAYL 274 >gi|330998361|ref|ZP_08322185.1| PP-loop family protein [Paraprevotella xylaniphila YIT 11841] gi|329568467|gb|EGG50272.1| PP-loop family protein [Paraprevotella xylaniphila YIT 11841] Length = 242 Score = 84.2 bits (207), Expect = 4e-14, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 30/216 (13%) Query: 25 AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-----ETAKDEVRYVSDVCSR 79 +SGG DS+ LL + + K+ +A+ V R + Y+ D + Sbjct: 36 GLSGGKDSLALLDFMAR-RARIHRPKLTLTALHV----RMTNIAYESD--TAYLEDFAAA 88 Query: 80 LRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V ++ + R ++ A+ ++ I H DD L T+ Sbjct: 89 RGVRLIVRETSFDPSTDTRKSPCFLCSWNRRKMLFTVAQELSCHKIALGHHQDDILHTLL 148 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-------ISWC 189 + + +G + + + I RP + +D+ ++ + + Sbjct: 149 LNL----SFQGQFGTMPVRLQMRKFPMTIIRPLCMVQEKDLAAWAELQGYRKQKKLCPYE 204 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 D +D + ++ + ++ A Y + Sbjct: 205 TDSHRSDIK----QIFGQIEQLNPEARYSMWNAMEQ 236 >gi|90416674|ref|ZP_01224604.1| putative ATPase [marine gamma proteobacterium HTCC2207] gi|90331427|gb|EAS46663.1| putative ATPase [marine gamma proteobacterium HTCC2207] Length = 278 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 22/229 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L + S K + A+++D + +V + Sbjct: 34 GDRIMVCLSGGKDSYAMLDILMGLQSSAPI-KFELVAVNLD-QKQPG---FPEHVLPEYL 88 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L I + ++ + R + A+ I T + H DD Sbjct: 89 DKLDIEYHILEKDTYSIVTSKVPEGKTYCSLCSRLRRGTLYGFAEQIGCTKVALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ K M + D D + RP CR D+ + + Sbjct: 149 IVETLFLNMFYQSKLKAMPPKLLSD----DKKNIVIRPLAYCRESDLVALAELKEFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N D +R V+ + + F ++ + +A Sbjct: 204 -PCNLCGSQDGLQRNVVKDMLVQWERQYPGRVESIFSSIKNVSPSQLAD 251 >gi|168704845|ref|ZP_02737122.1| tRNA(Ile)-lysidine synthetase [Gemmata obscuriglobus UQM 2246] Length = 173 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 8/173 (4%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI------ 211 + D + RP L R D+ ++L + + D SN D +F R RVR + + Sbjct: 1 MKDGGRPLVRPLLAVTRADVVTYLNELGQPFRTDSSNADPKFTRNRVRHELLPLLRTFNP 60 Query: 212 -DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLR 269 + AL + + V A A L+ + + + L L LR Sbjct: 61 EIVGALAHLAEHANEAHDIVIAAAADLLSRAERPPAAGTLILDAATLRSASPGLARAALR 120 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322 + G +S + + ER + C G V + + +TR Sbjct: 121 LVWEREGWPVSDMTFAAWERAVSVAGGSASACDFPGGVRMRGAGKVVQLTRRA 173 >gi|49083500|gb|AAT51049.1| PA1192 [synthetic construct] Length = 275 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L + I+F ++V+ H L Sbjct: 32 GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82 Query: 69 EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + I +SVV K + +T + R + A I AT + Sbjct: 83 -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD LET ++ G L M +L D + RP C +DI ++ Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 + P N + R+ V+++ L + + + + N V + Sbjct: 196 KEFP--ITPCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252 Query: 244 VHMRSI 249 ++ Sbjct: 253 FDFANL 258 >gi|332161706|ref|YP_004298283.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665936|gb|ADZ42580.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861073|emb|CBX71341.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia enterocolitica W22703] Length = 313 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ A+++D ++ V + Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD---QKQPGFPVDILPAYLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVARAYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SEIVDGGDLAFDREEL 284 >gi|318605799|emb|CBY27297.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Yersinia enterocolitica subsp. palearctica Y11] Length = 313 Score = 83.8 bits (206), Expect = 4e-14, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 20/256 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ A+++D ++ V + Sbjct: 39 GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD---QKQPGFPVDILPAYLD 94 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 95 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVARAYPII-- 208 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R ++ +RD D F ++ V + + + Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268 Query: 249 IIAISQDILNIDSTLL 264 + L D L Sbjct: 269 SEIVDGGDLAFDREEL 284 >gi|83854931|ref|ZP_00948461.1| ATPase of the PP superfamily [Sulfitobacter sp. NAS-14.1] gi|83842774|gb|EAP81941.1| ATPase of the PP superfamily [Sulfitobacter sp. NAS-14.1] Length = 275 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75 LV +SGG DS LL LH + R ++ A ++D + V ++ Sbjct: 44 SGGKWLVCMSGGKDSYTLLAILHELQ-WRGLLPVELVACNLDQG-QPNFPATVLPAFLEK 101 Query: 76 VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + RI + + A R + A+ T ++ H DD L Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGHLYRIAREEGCTAVVLGHHRDDIL 161 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 ET +M G + + + +L++ RP D F N Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFSTAMN 210 >gi|255292072|dbj|BAH90552.1| putative ATPase [uncultured bacterium] gi|255292619|dbj|BAH89729.1| putative ATPase [uncultured bacterium] Length = 291 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 21/187 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS LL L ++ R I F ++V+ L + +V + Sbjct: 35 AGDRVMVCISGGKDSYTLLDILMNL---RLNAPIDFEIVAVN--LDQKQPGFPAHVLPEY 89 Query: 77 CSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFD 129 + + ++ L R ++ HA+ I A I H D Sbjct: 90 FESVGVPFDILEEDTYSIVQSLTPEGKTTCPVCSRMRRGILYSHARRIGADKIALGHHLD 149 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISW 188 D +ET+++ G L M + D + RP CR +DI + R Sbjct: 150 DVVETLFLNLF-----YGGRLKAMPPKLRSDDGANMVIRPLYYCREKDIARWADFRGYPI 204 Query: 189 CEDPSNT 195 P N Sbjct: 205 I--PCNL 209 >gi|167624131|ref|YP_001674425.1| PP-loop domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|205830627|sp|B0TUN8|TTCA_SHEHH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|167354153|gb|ABZ76766.1| PP-loop domain protein [Shewanella halifaxensis HAW-EB4] Length = 311 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 17/177 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85 +SGG DS +L L ++ R+ K + A+++D + +++ L +A+ Sbjct: 44 LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEDILPA--YLDTLGVAYH 99 Query: 86 VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138 ++ K+ P+ + R + A+ I AT I H DD +ET+++ Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159 Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + + D + RP R +DI + + P N Sbjct: 160 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAGLKGFPII--PCNL 210 >gi|114563191|ref|YP_750704.1| PP-loop domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|122299732|sp|Q082E9|TTCA_SHEFN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|114334484|gb|ABI71866.1| PP-loop domain protein [Shewanella frigidimarina NCIMB 400] Length = 312 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 19/178 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ K + A+++D + +V +L +A+ Sbjct: 46 LSGGKDSYTMLDILLTLQ-QRAPIKFEIVAVNLD-QKQPG---FPEHVLPAYLDKLGVAY 100 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 101 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQHIGATKIALGHHRDDIIETMFL 160 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 G + + D + RP CR +DI + ++ P N Sbjct: 161 NMF----YAGKQKAMPPKLLSDDGANMVIRPLAYCREKDIEEYSTLKSFPII--PCNL 212 >gi|256811396|ref|YP_003128765.1| PP-loop domain protein [Methanocaldococcus fervens AG86] gi|256794596|gb|ACV25265.1| PP-loop domain protein [Methanocaldococcus fervens AG86] Length = 296 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 17/182 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILVAVSGG D L + ++ +++ ++ + V Sbjct: 43 KMLNKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIKDFSEISLETV 95 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126 + +L + VV+ K+ +T ++ RY L+++ +I+T H Sbjct: 96 KKLAEKLEVPLHVVNLKDITGKTMEDVRGKKCSICGTTKRY-LMNKFGYENGFDVIVTGH 154 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD++ + + + ++ + + +D L + F E I + I Sbjct: 155 NLDDEV-SFILNNILNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAEGI 212 Query: 187 SW 188 + Sbjct: 213 PF 214 >gi|188585053|ref|YP_001916598.1| PP-loop domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349740|gb|ACB84010.1| PP-loop domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 313 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 24/196 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 I++++ F + L ++VA+SGG DS+ L L K A +D + E Sbjct: 35 IKAIKKF-KMLPPNEKVIVAISGGKDSLALWDMLLD-------RGYKADAFYIDLGIDEY 86 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHA 114 +K + ++ +S + P++ A RY +++ A Sbjct: 87 SKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKEISRNNPRSACSACGLIKRY-IMNIFA 145 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCR 173 K N + T H DD+ ++ + R LS ++ + L +P R Sbjct: 146 KYGNYHAVATGHNLDDEASSLLGNTLRWQTGY---LSRQSPSMPSNNGLAKKIKPLCRLA 202 Query: 174 REDIRSFLLQRNISWC 189 ++ ++ + +NI + Sbjct: 203 EKETAAYCITKNIDYI 218 >gi|325918575|ref|ZP_08180685.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas vesicatoria ATCC 35937] gi|325535204|gb|EGD07090.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas vesicatoria ATCC 35937] Length = 304 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 19/183 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS LL L + + F+ ++V+ L + D +V Sbjct: 48 IAAGDKIMVCLSGGKDSYTLLDMLLHLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+ T I H Sbjct: 103 AYLRELGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186 DD + T +M L+ M + D + RP R DI + R Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAQYAQARQF 217 Query: 187 SWC 189 Sbjct: 218 PII 220 >gi|62180219|ref|YP_216636.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583854|ref|YP_002637652.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|75483213|sp|Q57P06|TTCA_SALCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790144|sp|C0Q3V6|TTCA_SALPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|62127852|gb|AAX65555.1| putative ATPase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468381|gb|ACN46211.1| hypothetical protein SPC_2080 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322714691|gb|EFZ06262.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 311 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEPLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F + P N +R + +RD D F ++ V + + Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + L D + Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284 >gi|77464643|ref|YP_354147.1| PP family ATPase [Rhodobacter sphaeroides 2.4.1] gi|123590901|sp|Q3IYY8|TTCA_RHOS4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|77389061|gb|ABA80246.1| ATPases of the PP superfamily [Rhodobacter sphaeroides 2.4.1] Length = 292 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R + A ++D + + + Sbjct: 44 RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 SR+ + H + + A R + A+ + ++ H DD Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 LET +M G + + D +L++ RP D F Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207 >gi|161829910|ref|YP_001596664.1| C32 tRNA thiolase [Coxiella burnetii RSA 331] gi|205830575|sp|A9NCM4|TTCA_COXBR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|161761777|gb|ABX77419.1| PP-loop family protein [Coxiella burnetii RSA 331] Length = 256 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 22 RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77 Query: 74 SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +I + +++ + R +I +A+ + I H Sbjct: 78 RGWLDDKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++T+ M + + M + D + + RP C+ DI + +++ Sbjct: 138 HRDDLIQTLLMSVFYNGQIRSMPPKLLSDNRRH----VLIRPLAYCQERDIIKYAMEQQF 193 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N ++ +R+ V+ + K ++ ++N + + + Sbjct: 194 PLI--PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNF 250 Query: 247 RSI 249 R + Sbjct: 251 REL 253 >gi|291617567|ref|YP_003520309.1| YdaO [Pantoea ananatis LMG 20103] gi|291152597|gb|ADD77181.1| YdaO [Pantoea ananatis LMG 20103] Length = 277 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDEV 70 I+V +SGG DS +L L S+ A+++D H L E Sbjct: 5 GDRIMVCLSGGKDSYTMLEILRSLQKSAPVS-FSLVAVNLDQKQPGFPGHILPE------ 57 Query: 71 RYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIM 123 + + +V K+ P+ + R ++ A + T I Sbjct: 58 -----YLDAQGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGCTKIA 112 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD L+T+++ KGM M D D + RP CR +DI F Sbjct: 113 LGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRFSEA 168 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 R P N +R V +RD D F ++ V + +A + Sbjct: 169 RQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHMADINLF 226 Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264 + L D L Sbjct: 227 DFKGIQHGDAVVDGGDLAFDRETL 250 >gi|83644992|ref|YP_433427.1| C32 tRNA thiolase [Hahella chejuensis KCTC 2396] gi|123533751|sp|Q2SK22|TTCA_HAHCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|83633035|gb|ABC29002.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Hahella chejuensis KCTC 2396] Length = 285 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ + I F I+V+ L + +V + S L + + Sbjct: 48 LSGGKDSYAMLDILLNL---KKHAPISFEVIAVN--LDQKQPGFPEHVLPEYLSSLGVEY 102 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 V+ R ++ + A T I H DD +ET+++ Sbjct: 103 YVIERDTYSIVKDKIPEGKTTCGLCSRLRRGILYDFAVEHKCTKIALGHHRDDIMETLFL 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 + M D + RP CR +DI + R P N Sbjct: 163 NMFYGGKMRAM----PPKLKSDDGRNIVIRPLAYCREKDIERYAGLREFPII--PCNLCG 216 Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + +R ++ ++D D F+ ++ + Sbjct: 217 SQENLQRQNIKMMLQDWDKRFPGRLENMFRAVQNVL 252 >gi|56477339|ref|YP_158928.1| C32 tRNA thiolase [Aromatoleum aromaticum EbN1] gi|81357490|sp|Q5P3T7|TTCA_AZOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56313382|emb|CAI08027.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Aromatoleum aromaticum EbN1] Length = 316 Score = 83.8 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 94/251 (37%), Gaps = 21/251 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V VSGG DS LL L ++ +R+ + A+++D + EV Y + Sbjct: 53 VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIIAMNLD-QKQPGFPAEVLPAYFESIGVE 110 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI +S+V K + +T + R +I A+ + AT I H DD LET+ Sbjct: 111 YRIVTEDTYSIVKDKIPEGKT-TCSLCSRLRRGIIYRVARELGATRIALGHHRDDMLETL 169 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ G + M ++ D + RP C DI F P N Sbjct: 170 FLNLF-----FGGKIKAMPPKLVSDNGEHVVIRPLAYCTEADIAKFARTMEFPII--PCN 222 Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254 + R+ ++ + + + + + V + R+ +++ Sbjct: 223 LCGS-QENAQRKQIKTMLQGWAREHPGRIESIATALGQVVPSHLADASLFDFRN---LTR 278 Query: 255 DILNIDSTLLF 265 D L + + F Sbjct: 279 DTLVAEGDIAF 289 >gi|227822181|ref|YP_002826152.1| C32 tRNA thiolase [Sinorhizobium fredii NGR234] gi|254790136|sp|C3MD80|TTCA_RHISN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|227341181|gb|ACP25399.1| putative ATPase [Sinorhizobium fredii NGR234] Length = 296 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 79/238 (33%), Gaps = 27/238 (11%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59 + VR L LV VSGG DS LL L + R ++ A ++D Sbjct: 46 RLLRQVRQAFDGFGMLKGSKRWLVGVSGGKDSYSLLALLMDL-KWRGLLPVELIACNLDQ 104 Query: 60 -------HCLRETAKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGL--MAAAREARYAL 109 H L Y++ + R RI + S K TG + R Sbjct: 105 GQPNFPKHIL-------PDYLASIGVRHRIEYRDTYSIVKEKVPTGATYCSLCSRLRRGN 157 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 + A+ ++ H +D LET +M G S + + +L + RP Sbjct: 158 LYRIAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRPL 213 Query: 170 LRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +D+ F D + D ER ++ + DI+ K + L Sbjct: 214 TYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 271 >gi|255307424|ref|ZP_05351595.1| hypothetical protein CdifA_12587 [Clostridium difficile ATCC 43255] Length = 286 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAI----SV 58 ++++R + + + I VA+SGG DS+ + + I+F A+ Sbjct: 39 KFMKAIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQELKKHGQVNFDIEFIAMDPGYHA 97 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEH 113 + +R + + D C L I + + + R + Sbjct: 98 N--IR-------QLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H +DD +ET + L + T + I RP R Sbjct: 149 AEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYIR 205 Query: 174 REDIRSFLLQRNI 186 E I F+ I Sbjct: 206 EEHIIRFIQNSGI 218 >gi|85712899|ref|ZP_01043940.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] gi|85693279|gb|EAQ31236.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica OS145] Length = 306 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 19/172 (11%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 + I+V +SGG DS LL L + + I F ++V+ L + +V + Sbjct: 37 HNDKIMVCLSGGKDSYTLLDTLMYL---KRVAPISFDIVAVN--LDQKQPGFPEHVLPNY 91 Query: 77 CSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + +V K+ P+ + R ++ + AK + AT I H D Sbjct: 92 LNSLGVDYEIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYKTAKRLGATKIALGHHRD 151 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180 D +ET+++ G L M ++ D + RP CR +DI + Sbjct: 152 DMIETLFLNMF-----YGGKLKSMPPKLVSDNGEHVVIRPLAFCREKDIARY 198 >gi|84517258|ref|ZP_01004613.1| hypothetical protein SKA53_00425 [Loktanella vestfoldensis SKA53] gi|84508933|gb|EAQ05395.1| hypothetical protein SKA53_00425 [Loktanella vestfoldensis SKA53] Length = 283 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 16/214 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L+ + R + A ++D + + + +R+ Sbjct: 51 KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLARM 106 Query: 81 RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + H + + A R + A+ + ++ H DD LE Sbjct: 107 GVPHRIEYQDTYSIVMDKVPAGRTFCALCSRLRRGNLYRVAREEGCSAVVLGHHRDDILE 166 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192 T +M G + + + +L++ RP D F D Sbjct: 167 TFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFAQAMQYPIIPCDL 222 Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 + D +R +V++ + + ++ + F+ L Sbjct: 223 CGSQDGLQRQQVKQILDGWERNSPGRRQVMFRSL 256 >gi|302348716|ref|YP_003816354.1| ATPase, PP-loop superfamily [Acidilobus saccharovorans 345-15] gi|302329128|gb|ADL19323.1| ATPase, PP-loop superfamily [Acidilobus saccharovorans 345-15] Length = 338 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 16/180 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80 +LVAVSGG DS+ L+ L + + + A+ + + E ++ + D CS+ Sbjct: 66 LLVAVSGGKDSVTLMNVLDEIAPELG---VNIVAVHIVLGMGEFSEKSLEAFRDSCSKAK 122 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHTFDD 130 + V K R R +++ A ++ A+ I T H +D Sbjct: 123 NVKCVTVDLKELLGMYMPEIIRRSRRPACSVCGLVKRYILNAMAVSLGASSIATGHHMND 182 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + + L + ++ + RP ++ R+F+ +++ + Sbjct: 183 LMTYAIKNFMEQKLDNITKLGPVSES--EGSAVKRVRPLYDIYEDETRAFVKVYGLNYVD 240 >gi|126463483|ref|YP_001044597.1| C32 tRNA thiolase [Rhodobacter sphaeroides ATCC 17029] gi|221640555|ref|YP_002526817.1| PP-loop domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559536|ref|ZP_08413858.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodobacter sphaeroides WS8N] gi|205830639|sp|A3PNA9|TTCA_RHOS1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|254790137|sp|B9KNZ4|TTCA_RHOSK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|126105147|gb|ABN77825.1| PP-loop domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161336|gb|ACM02316.1| PP-loop domain protein [Rhodobacter sphaeroides KD131] gi|332277248|gb|EGJ22563.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodobacter sphaeroides WS8N] Length = 292 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A LV +SGG DS LL LH + R + A ++D + + + Sbjct: 44 RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 SR+ + H + + A R + A+ + ++ H DD Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 LET +M G + + D +L++ RP D F Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207 >gi|242278578|ref|YP_002990707.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638] gi|242121472|gb|ACS79168.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638] Length = 310 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 17/138 (12%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 R+L+ P +LVA+SGG DS+GL+ AL + + + +D + E++ Sbjct: 41 RNLLEPDDKVLVALSGGKDSLGLMYALSEL-------GYDVTGLHIDLGIYESSIKARAV 93 Query: 73 VSDVCSRLRIAHSVVSWKNSKP---------QTGLMAAAREARYALISEHAKTINATLIM 123 V C VV + + + A + + ++ A T + Sbjct: 94 VEGFCKDKGYPLRVVELEKEGVPMPLIKKHIRRPICAICGKFKRHYFNKVAIEEGYTALA 153 Query: 124 TAHTFDDQLETVYMRSQR 141 T H DD++ ++ + R Sbjct: 154 TGHNLDDEVARLFANTLR 171 >gi|119476323|ref|ZP_01616674.1| putative ATPase [marine gamma proteobacterium HTCC2143] gi|119450187|gb|EAW31422.1| putative ATPase [marine gamma proteobacterium HTCC2143] Length = 333 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 22/222 (9%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L + + A+++D + ++ + +L + Sbjct: 78 LSGGKDSFVMLDILLQLQKSAPV-NFELIAVNLD-QKQPG---FPEHILPEYLEKLAVPF 132 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ R + A+TI AT I H DD +ET+++ Sbjct: 133 YIIDKDTYSVVKSKIPEGKTTCGLCSRLRRGTLYSFAETIGATKIALGHHRDDMVETLFL 192 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 K S D + RP C+ +D+ + R P N Sbjct: 193 NMFYGSRLK----SMPPKLRSNDGRNVVIRPLAYCKEKDLIALAEHREFPII--PCNLCG 246 Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 + +R ++ ++D + F+ ++ + +A Sbjct: 247 SQENLQRQSIKVMLQDWEKQHPGRVENIFRSMQNISPSQLAD 288 >gi|239813981|ref|YP_002942891.1| PP-loop domain protein [Variovorax paradoxus S110] gi|259550672|sp|C5CNK9|TTCA_VARPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|239800558|gb|ACS17625.1| PP-loop domain protein [Variovorax paradoxus S110] Length = 309 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 ++V VSGG DS +L L + + R+ A+++D + +EV RY+S++ Sbjct: 49 GDKVMVCVSGGKDSYAMLDILLKLRA-RAPIHFDIVAVNLD-QKQPGFPEEVLPRYLSEL 106 Query: 77 CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I +S+V + +T R ++ A + AT + H DD L Sbjct: 107 GVDFHIENQDTYSIVKRVIPEGKT-TCGLCSRLRRGILYRVADELGATKVALGHHRDDML 165 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +T ++ G S + D + RP +D+ + R Sbjct: 166 QTFFLNMF----FAGKLKSMPPKLVSDDGKHIVIRPLAYVAEKDLVRWAQHREFPII 218 >gi|88798315|ref|ZP_01113901.1| hypothetical protein MED297_13692 [Reinekea sp. MED297] gi|88779091|gb|EAR10280.1| hypothetical protein MED297_13692 [Reinekea sp. MED297] Length = 310 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L S+ + A+++D + ++ + Sbjct: 37 GDRIMVCLSGGKDSFTMLDILMSLQKSAPV-NFELIAVNLD-QKQPG---FPEHILPEYL 91 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + ++ R + I A I A + H DD Sbjct: 92 KSVGVPFHILERDTYSIVQETVPEGKTTCGICSRLRRSTIYAFADQIGANKVALGHHRDD 151 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ G L M +L D + + RP CR DI F +N Sbjct: 152 IIETLFLNMF-----YGGKLKAMPPKLLSDSKSNILIRPLAYCRESDIEEFARLKNYPII 206 Query: 190 EDPSNT 195 P N Sbjct: 207 --PCNL 210 >gi|327393998|dbj|BAK11420.1| ATPase YdaO [Pantoea ananatis AJ13355] Length = 311 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 56/276 (20%), Positives = 89/276 (32%), Gaps = 37/276 (13%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------- 59 E++ F + I+V +SGG DS +L L S+ A+++D Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPVS-FSLVAVNLDQKQPGFP 85 Query: 60 -HCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALIS 111 H L E + + +V K+ P+ + R ++ Sbjct: 86 GHILPE-----------YLDAQGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILY 134 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 A + T I H DD L+T+++ KGM M D D + RP Sbjct: 135 RTATELGCTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAY 190 Query: 172 CRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 CR +DI F R P N +R V +RD D F ++ Sbjct: 191 CREKDIIRFSEARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQN 248 Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264 V + +A + + L D L Sbjct: 249 VVPSHMADINLFDFIGIQHGDAVVDGGDLAFDRETL 284 >gi|308186953|ref|YP_003931084.1| UPF0021 protein [Pantoea vagans C9-1] gi|308057463|gb|ADO09635.1| UPF0021 protein [Pantoea vagans C9-1] Length = 311 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 53/269 (19%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L S+ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPV-NFSLIAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ + + +V K+ P+ + R ++ A + Sbjct: 84 --FPEHILPQYLESQGVEYRIVEEDTYSIVKDKVPEGKTTCSLCSRLRRGILYRVATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H DD L+T+++ KGM M D D + RP CR +DI Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDII 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R V +RD D F ++ V + +A Sbjct: 198 RFSEARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + L D L Sbjct: 256 DVSLFDFKGIKHGDAVVDGGDLAFDRQTL 284 >gi|85705857|ref|ZP_01036953.1| hypothetical protein ROS217_08670 [Roseovarius sp. 217] gi|85669445|gb|EAQ24310.1| hypothetical protein ROS217_08670 [Roseovarius sp. 217] Length = 289 Score = 83.4 bits (205), Expect = 6e-14, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 16/217 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL LH + R + A ++D + + D Sbjct: 44 PGGKWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPDFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+++ H + + A R + A+ T ++ H DD Sbjct: 100 NRMQVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCTAVVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189 LET +M G + + + +L++ RP D F N Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCERFSRAMNYPIIP 215 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + D +R +V++ + + +A + F+ L Sbjct: 216 CDLCGSQDGLQRQQVKQILDGWEANAPGRRQVMFRAL 252 >gi|302877435|ref|YP_003845999.1| PP-loop domain-containing protein [Gallionella capsiferriformans ES-2] gi|302580224|gb|ADL54235.1| PP-loop domain protein [Gallionella capsiferriformans ES-2] Length = 280 Score = 83.4 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 91/241 (37%), Gaps = 21/241 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR--YVSDVCSR 79 ++V +SGG DS LL L ++ R+ + A+++D + ++ Y+ + Sbjct: 43 VMVCLSGGKDSYTLLDILLTL-RKRAPIDFRIVAMNLD-QKQPGFPADILPGYLKALGVE 100 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 I +S+V K + +T + R +I + A + A I H DD +ET+ Sbjct: 101 YHIETQDTYSIVKEKIPEGKT-TCSLCSRLRRGIIYKVAGELGANKIALGHHRDDMIETL 159 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSN 194 ++ L M ++ D I RP C +DI + P N Sbjct: 160 FLNMFFAGK-----LKAMPPKLVTDKGDHIVIRPLAYCVEKDIARYARGMEFPII--PCN 212 Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSII 250 + +R ++ + + + F ++ V ++ + + + + M + Sbjct: 213 LCGSQENLQRQNIKEMLTNWERQYPGRSQTIFTAMQNVAPSHLLDGTLFDFKGMQMGQDV 272 Query: 251 A 251 A Sbjct: 273 A 273 >gi|119896776|ref|YP_931989.1| C32 tRNA thiolase [Azoarcus sp. BH72] gi|205830554|sp|A1K2P7|TTCA_AZOSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|119669189|emb|CAL93102.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 306 Score = 83.4 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 16/196 (8%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79 ++V VSGG DS LL L ++ +R+ + A+++D + D+V Y + Sbjct: 44 VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIVAMNLD-QKQPGFPDDVLPAYFESIGVE 101 Query: 80 LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 RI +S+V K + +T + R +I AK I AT I H DD LET+ Sbjct: 102 YRIVTEDTYSIVKDKIPEGKT-TCSLCSRLRRGIIYRTAKEIGATRIALGHHRDDMLETL 160 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 ++ K M + D + RP C DI F + P N Sbjct: 161 FLNMFFGGKIKAM----PPKLVSDDGQHVVIRPLAYCTENDIERFARGMDFPII--PCNL 214 Query: 196 DDRFERVRVRRFVRDI 211 + R+ ++ + Sbjct: 215 CGS-QENAQRKQIKTM 229 >gi|325922029|ref|ZP_08183831.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas gardneri ATCC 19865] gi|325547489|gb|EGD18541.1| putative ATPase of the PP-loop superfamily implicated in cell cycle control [Xanthomonas gardneri ATCC 19865] Length = 304 Score = 83.4 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 20/242 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74 + I+V +SGG DS LL L + + F+ ++V+ L + D +V Sbjct: 48 IAAGDKIMVCLSGGKDSYTLLDMLLHLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102 Query: 75 DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + +V + + R + +A+ T I H Sbjct: 103 SYLRGLDVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHH 162 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD + T +M M D + RP R DI ++ R Sbjct: 163 RDDIVATFFMNLFHHARLAAMA----PKLRSDDGQHVVIRPLAYVRETDIAAYAQARQFP 218 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + R+ V + + + + + + + + Sbjct: 219 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVEQIARALGDVRPEQLADRTLFDFL 275 Query: 248 SI 249 S+ Sbjct: 276 SL 277 >gi|241766471|ref|ZP_04764341.1| PP-loop domain protein [Acidovorax delafieldii 2AN] gi|241363323|gb|EER58853.1| PP-loop domain protein [Acidovorax delafieldii 2AN] Length = 318 Score = 83.4 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + R+ A+++D + +V D Sbjct: 58 GDKVMVCMSGGKDSYALLDILLKL-KTRAPIHFDLVAVNLD-QKQPG---FPEHVLPDYL 112 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S + + + + R ++ A + AT I H DD Sbjct: 113 SSTGVPFHIENEDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 172 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+ + K S + D + RP +D + RN Sbjct: 173 ILQTLLLNMFFGGKLK----SMPPKLVSDDGRHVVIRPLAFVPEKDTARWAQHRNFPII- 227 Query: 191 DPSNT 195 P N Sbjct: 228 -PCNL 231 >gi|329298379|ref|ZP_08255715.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Plautia stali symbiont] Length = 311 Score = 83.4 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ + FS ++V+ L + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQS---APVNFSLVAVN--LDQKQ 81 Query: 67 KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 +V L + + +V+ + R + A + Sbjct: 82 LGFPAHVLPAYLDTLGVEYQIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGTLYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H DD L+T+++ KGM M + D + RP CR +DI Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSN----DGKHIVIRPLAYCREKDIV 197 Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 F R P N +R V +RD D F ++ V + +A Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNIVPSHMA 255 Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264 + + + D L Sbjct: 256 DINLFDFKGIKHGDAVVDGGDIGFDRESL 284 >gi|325578378|ref|ZP_08148513.1| PP-loop family protein [Haemophilus parainfluenzae ATCC 33392] gi|325160114|gb|EGC72243.1| PP-loop family protein [Haemophilus parainfluenzae ATCC 33392] Length = 309 Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 38 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 92 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 93 QSIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP C+ +DI + + + Sbjct: 153 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII 207 Query: 190 EDPSNT 195 P N Sbjct: 208 --PCNL 211 >gi|126700013|ref|YP_001088910.1| hypothetical protein CD2398 [Clostridium difficile 630] gi|255101555|ref|ZP_05330532.1| hypothetical protein CdifQCD-6_12149 [Clostridium difficile QCD-63q42] gi|255656373|ref|ZP_05401782.1| hypothetical protein CdifQCD-2_11914 [Clostridium difficile QCD-23m63] gi|296450178|ref|ZP_06891939.1| PP-loop family protein [Clostridium difficile NAP08] gi|296878559|ref|ZP_06902564.1| PP-loop family protein [Clostridium difficile NAP07] gi|115251450|emb|CAJ69283.1| putative 2-thiocytidine tRNA biosynthesis protein TtcA [Clostridium difficile] gi|296260941|gb|EFH07775.1| PP-loop family protein [Clostridium difficile NAP08] gi|296430366|gb|EFH16208.1| PP-loop family protein [Clostridium difficile NAP07] Length = 286 Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHC 61 ++++R + + + I VA+SGG DS+ + + + G++ F I++D Sbjct: 39 KFMKAIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQEL---KKHGQVNFDVEFIAMDPG 94 Query: 62 LRETAKDEVRYVSDV----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112 + + C L I + + + R + Sbjct: 95 YHAN-------IRQLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYS 147 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + + H +DD +ET + L + T + I RP Sbjct: 148 KAEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYI 204 Query: 173 RREDIRSFLLQRNI 186 R E I F+ I Sbjct: 205 REEHIIRFIQNSGI 218 >gi|260222290|emb|CBA31706.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 318 Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 26/207 (12%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS G+L L + R+ + A+++D + D + + + Sbjct: 29 GDRVMVCMSGGKDSYGMLDILLKMQ-QRAPINFEIVAVNLD-QKQPGFPD--HILPEYLA 84 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + + + +N + + R ++ A+ + + H DD Sbjct: 85 KLGVEFHIETQDTYSIVKRNIPEGKTMCSLCSRLRRGILYSVARKLKCNKLALGHHRDDM 144 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 L+T ++ G L GM + D + + RP +D+ + R Sbjct: 145 LQTFFLNMF-----FGGKLKGMPPKLTSDNGEFVVIRPLAYVAEKDLIRWAAHREFPIIP 199 Query: 191 DP-----SNTDDRFERVRVRRFVRDID 212 +N RV++ +RD + Sbjct: 200 CSLCGSQTNLQ----RVQIGNMLRDWE 222 >gi|254463423|ref|ZP_05076839.1| hypothetical protein RB2083_4014 [Rhodobacterales bacterium HTCC2083] gi|206680012|gb|EDZ44499.1| hypothetical protein RB2083_4014 [Rhodobacteraceae bacterium HTCC2083] Length = 304 Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 16/220 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL L + R ++ A ++D + + + Sbjct: 67 PGGKWLVCMSGGKDSYTLLAILIEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 122 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ I H + + A R + A+ T ++ H DD Sbjct: 123 EKMGIPHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGNLYRVAREEGCTAVVLGHHRDD 182 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189 LET +M G + + + +L++ RP D F N Sbjct: 183 ILETFFMNLFHG----GRLATMPPKLLNEEGDLFVYRPLAHVAEVDCEKFASAMNYPIIP 238 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229 D + D +R +V++ + + + + F+ L Sbjct: 239 CDLCGSQDGLQRQQVKQILDGWEANNPGRRQVMFRALTNA 278 >gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] gi|325554637|gb|EGD24312.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Rhodococcus equi ATCC 33707] Length = 244 Score = 83.0 bits (204), Expect = 8e-14, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT DDQ ETV + R G + GM + RP LR RR+ R Sbjct: 41 VLLGHTLDDQAETVLLGLARGSG--GRSIRGMAGY-----DAPWGRPLLRVRRDVTRRAC 93 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 + + EDP N D F RVR+R V + AL Sbjct: 94 AELGLVAHEDPHNADPAFTRVRLRTEVLPLLEDALG 129 >gi|294675904|ref|YP_003576519.1| PP-loop family ATPase [Rhodobacter capsulatus SB 1003] gi|294474724|gb|ADE84112.1| ATPase, PP-loop family [Rhodobacter capsulatus SB 1003] Length = 294 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 41/279 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL AL + R + A ++D + + D Sbjct: 45 PGDRWLVCLSGGKDSYTLLAALVEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPDFL 100 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ +AH + V + + R + A+ + ++ H DD Sbjct: 101 TRMGVAHRIEFQDTYSVVKEKIPEGQTTCSLCSRLRRGNLYRIAREEGCSTVVLGHHRDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET +M G + + + +L++ RP D F Sbjct: 161 ILETFFMNLFHG----GRLATMPPRLLNEEGDLFVCRPLAFVAEADCEKFARGMGYPII- 215 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTVHMRSI 249 P N L + Q ++V ++ +A P V RS+ Sbjct: 216 -PCN---------------------LCGSQEGLQRVQVKQILDAWEARSPGRRQVMFRSL 253 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGG--QISLPGYRS 286 + + L F L + A G ++P R Sbjct: 254 MNVRPSHLCDPGLFDFAALMRAEAPIAGDFNENMPNLRQ 292 >gi|160896694|ref|YP_001562276.1| C32 tRNA thiolase [Delftia acidovorans SPH-1] gi|205830578|sp|A9BXV6|TTCA_DELAS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|160362278|gb|ABX33891.1| PP-loop domain protein [Delftia acidovorans SPH-1] Length = 313 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L + R+ K + A+++D + D +V + Sbjct: 52 GDKIMVCMSGGKDSYTMLDVLRKLQK-RAPVKFELVAVNLD-QKQPGFPD---HVLPEYF 106 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + R A++ + A + T + H DD Sbjct: 107 KSIGVDYHIETQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADELGCTKVALGHHRDD 166 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 ++T+ + KGM + D + RP +D + +N Sbjct: 167 IVQTLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTVRWAQYQNFPII- 221 Query: 191 DPSNT 195 P N Sbjct: 222 -PCNL 225 >gi|301156276|emb|CBW15747.1| predicted C32 tRNA thiolase [Haemophilus parainfluenzae T3T1] Length = 309 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 38 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 92 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 93 QSIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP C+ +DI + + + Sbjct: 153 MLATLFLNIF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPII 207 Query: 190 EDPSNT 195 P N Sbjct: 208 --PCNL 211 >gi|205830656|sp|A5UBX9|TTCA_HAEIE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 310 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|148825910|ref|YP_001290663.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE] gi|148716070|gb|ABQ98280.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE] Length = 276 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 5 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 60 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 174 Query: 191 DPSNT 195 P N Sbjct: 175 -PCNL 178 >gi|145634319|ref|ZP_01790029.1| hypothetical protein CGSHiAA_05999 [Haemophilus influenzae PittAA] gi|145268299|gb|EDK08293.1| hypothetical protein CGSHiAA_05999 [Haemophilus influenzae PittAA] Length = 313 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|159042886|ref|YP_001531680.1| C32 tRNA thiolase [Dinoroseobacter shibae DFL 12] gi|205830580|sp|A8LMA2|TTCA_DINSH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|157910646|gb|ABV92079.1| PP-loop ATPase [Dinoroseobacter shibae DFL 12] Length = 287 Score = 83.0 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 LV +SGG DS LL AL + R ++ A ++D + + + Sbjct: 50 KPRWLVCLSGGKDSYTLLAALTELQ-WRGLLPVEILACNLD---QGQPGFPATVLPEFLE 105 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 R+ + H + + A R + A+ + ++ H DD Sbjct: 106 RMGVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCSAVLLGHHRDDI 165 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 LET +M G + + + +L++ RP D F Sbjct: 166 LETFFMNLFHG----GRLATMPPKLVNEEGDLFVLRPLAHVAEADCARFAKA 213 >gi|68250114|ref|YP_249226.1| C32 tRNA thiolase [Haemophilus influenzae 86-028NP] gi|81335462|sp|Q4QK81|TTCA_HAEI8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|68058313|gb|AAX88566.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae 86-028NP] Length = 310 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ + K A+++D + +V + Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLQQNAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|152996252|ref|YP_001341087.1| PP-loop domain-containing protein [Marinomonas sp. MWYL1] gi|205830602|sp|A6VXH3|TTCA_MARMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|150837176|gb|ABR71152.1| PP-loop domain protein [Marinomonas sp. MWYL1] Length = 279 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 30/258 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ + I FS ++V+ L + ++ Sbjct: 38 GDKVMVCLSGGKDSYTMLEILRNLQAS---APINFSIVAVN--LDQKQPGFPEHILPAYL 92 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + ++ R + A+ I AT I H DD Sbjct: 93 EELGVDFHILERDTYSIVKEIVPEGKTTCGLCSRLRRGSLYGFAEEIGATKIALGHHRDD 152 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M +L D I RP C+ EDI +F + + Sbjct: 153 ILETLFLNMF-----FGGKLKSMPPKLLSDDGKHIVIRPLAYCKEEDIEAFSVMKEYPII 207 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+D+ ++K++ ++ I + H+ Sbjct: 208 --PCNLCGS-QENLQRQVVKDM--------LQKWEKEFPGRTESMFSAIQNVVPSHLADT 256 Query: 250 IAISQDILNIDSTLLFYL 267 L L Sbjct: 257 KLFDFKGLKQSPAAFDRL 274 >gi|330504156|ref|YP_004381025.1| C32 tRNA thiolase [Pseudomonas mendocina NK-01] gi|328918442|gb|AEB59273.1| C32 tRNA thiolase [Pseudomonas mendocina NK-01] Length = 274 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 34/211 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L + IKF ++V+ H L Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIKFEIVAVNMDQKQPGFPEHVL------ 82 Query: 69 EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + + I +SVV K + +T + R + +A I AT + Sbjct: 83 -PAYLESIGVQYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTYADEIGATKMAL 140 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183 H DD LET ++ G L M +L D + RP C DI ++ Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCAEADIEAYSQL 195 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214 + P N + R+ V+++ Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLQE 223 >gi|303244453|ref|ZP_07330788.1| PP-loop domain protein [Methanothermococcus okinawensis IH1] gi|302485151|gb|EFL48080.1| PP-loop domain protein [Methanothermococcus okinawensis IH1] Length = 306 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 20/182 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +SGG DS+ + L+ + A+ VD + KD V C Sbjct: 50 IGMGLSGGKDSLVMAYILNEFY--KPIPNSNIIALIVDEGIEGFRKDGVNMAIKFCEEYD 107 Query: 82 IAHSVVSWK---------------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 IA+ + ++K + + R ++++ A + H Sbjct: 108 IAYKIATFKEYIGYDLDELVKIAKDKNLTMNPCSFCGVIRRKILNKMALNEKCNYLAIGH 167 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD + + M +K L + ++ + +P ++ F I Sbjct: 168 NLDDMAQAIMMNYIEGDVKKLAILGHDANNPMF---VKRIKPLKYIPENEVLLFADLLEI 224 Query: 187 SW 188 + Sbjct: 225 KY 226 >gi|307069632|ref|YP_003878109.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Zinderia insecticola CARI] gi|306482892|gb|ADM89763.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Zinderia insecticola CARI] Length = 443 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 46/229 (20%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS LL ++ + ++ K+ I ++ Sbjct: 24 VAIAYSGGIDSSVLLNIIYKLNLNK---KLNIFIIYIN--------------------HN 60 Query: 82 IAHSVVSWKNSKPQTG--------------------LMAAAREARYALISEHAKTINATL 121 I + K + L R+ RY I + K N Sbjct: 61 INKNFFFLKKKLKKNLKKYKYLRIKIIKIKKNKDNNLEKKLRDQRYLKILNYCKKNNIKY 120 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ AH D +E +++ R I N+ I RPFL + I+ + Sbjct: 121 VLLAHHKLDLIENIFLNILRGCNLF---NIINIKNINILNNIKIIRPFLNLSKIYIKKYS 177 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 I + D +N + ++R +R + L+ +KK +L+ + Sbjct: 178 KIYKIKFINDKTNYNIYYKRNILRNKIIPFILNYFPNFIKKLNNLKKNI 226 >gi|313679560|ref|YP_004057299.1| pp-loop domain protein [Oceanithermus profundus DSM 14977] gi|313152275|gb|ADR36126.1| PP-loop domain protein [Oceanithermus profundus DSM 14977] Length = 329 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 23/187 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ILVAVSGG DS+ L L + + I+ + + ++ + Sbjct: 42 RMIRPGDRILVAVSGGKDSLVLWDTLARLGHAATGFHIQL-------GIGDYSQRALEAT 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREA--------RYALISEHAKTINATLI 122 + + VV + S T A R A RY L++ A+ ++ Sbjct: 95 RAFAAARGLELIVVDVRQSFGLTIPQLAQATGRAACSGCGLSKRY-LMNRVAEEEGFNVV 153 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFL 181 T H DD+ T+ + L + L +P ++ ++ Sbjct: 154 ATGHNLDDEAATLLGNV---SHWQLDALVRQGPMLEGREGLARRIKPLYTFTEREVAAYA 210 Query: 182 LQRNISW 188 I++ Sbjct: 211 FLAGIAY 217 >gi|150398925|ref|YP_001322692.1| PP-loop domain-containing protein [Methanococcus vannielii SB] gi|150399417|ref|YP_001323184.1| PP-loop domain-containing protein [Methanococcus vannielii SB] gi|150011628|gb|ABR54080.1| PP-loop domain protein [Methanococcus vannielii SB] gi|150012120|gb|ABR54572.1| PP-loop domain protein [Methanococcus vannielii SB] Length = 308 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 20/183 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I + +SGG DS+ + L + K + VD + D + D C+ Sbjct: 48 KIGIGLSGGKDSLVMAHLLSEFF--KPIPNAKLIGLMVDEGIDGFRTDGINNAIDFCNEY 105 Query: 81 RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 I + VV +K+ + R ++++ A + Sbjct: 106 DIEYKVVHFKDYIETDLDTIVKLAKEKNLTMNPCSFCGVIRRKILNKIAIIEKCDYLAIG 165 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD + V M +K L + + +P + +++ F Sbjct: 166 HNLDDISQAVMMNYIEGNIKKLAVLGKDSKNSKF---VKRIKPLEKIPEDEVLLFADFLK 222 Query: 186 ISW 188 + + Sbjct: 223 LKY 225 >gi|315425194|dbj|BAJ46864.1| hypothetical conserved protein [Candidatus Caldiarchaeum subterraneum] Length = 233 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 24/185 (12%) Query: 45 DRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104 ++ F + A++VD + + + YV +V L + S++ + ++ A + Sbjct: 5 EKRFPRAGLVAVTVDEGIEGYRDEALEYVEEVTRMLEVPLYKTSFEEAFGKSLSEIVASK 64 Query: 105 ---------------ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149 R I+ AK AT+I TAHT DD ++T ++++ R G Sbjct: 65 QFRSSGLAACSVCGPLRRRAINIAAKRAGATVIATAHTLDDVVQTYFLKTFRGEL--GTS 122 Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRF 207 G+ + + PF ++ + NI + P N R +RRF Sbjct: 123 EIGLRLEGPF---IPRVAPFRLTPEREVVFYAYLHNIPFQSQVCP-NAATS-MRNMIRRF 177 Query: 208 VRDID 212 + + D Sbjct: 178 LAEFD 182 >gi|145631383|ref|ZP_01787154.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae R3021] gi|144983042|gb|EDJ90546.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae R3021] Length = 273 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 19/183 (10%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSR 79 ++V +SGG DS LL L ++ + K A+++D + +V + Sbjct: 4 KVMVCLSGGKDSYTLLDILLNLQQNAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYLES 58 Query: 80 LRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + + + +V K P+ + R ++ A + AT I H DD L Sbjct: 59 IGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDML 118 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 T+++ K S I D + RP C+ +DI + + + P Sbjct: 119 ATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII--P 172 Query: 193 SNT 195 N Sbjct: 173 CNL 175 >gi|319897022|ref|YP_004135217.1| hypothetical protein HIBPFp02 [Haemophilus influenzae F3031] gi|317432526|emb|CBY80886.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 276 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 5 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 60 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLTYCKEKDIEKYAIAKEFPII- 174 Query: 191 DPSNT 195 P N Sbjct: 175 -PCNL 178 >gi|144897903|emb|CAM74767.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] Length = 259 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 13/223 (5%) Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAM 236 QR+ W +DP N R RV +R + L + +N VA Sbjct: 2 RQRDQDWVDDPFNIGPRHARVPLRLLADTLAAEGLEPGRLAQTARTLAVAGDALNRMVAD 61 Query: 237 LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295 + +++ +H + D + + LL GG+ P + ++ L+ Sbjct: 62 AVVEWVDIHPPGFAWVRSDAWGQLPEDVALRLLVRLLCCHGGEEFPPRLERSQSLLRRLR 121 Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL---- 351 G+ G ++ RV+ L+ A R + P +WDGR++ + + Sbjct: 122 HGQGGTLAGCRVMAAADGRVLFCREAGRMAEPVSAEPGAEILWDGRFRAVVPAQAPPGLR 181 Query: 352 -IQIGPQSYRK--ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391 +GPQ + K V G P I +++P + A Sbjct: 182 LGGLGPQGWGKVVKAVGRGRLPDIPAMVRATLPVLMDEDGVFA 224 >gi|188997411|ref|YP_001931662.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932478|gb|ACD67108.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 304 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 89/243 (36%), Gaps = 28/243 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +E + + ILVAVSGG DS+ L AL + ++ Sbjct: 31 FDNRVEKTIKEFKMFDKNSKILVAVSGGKDSLSLWNALAKL-------GYNVDGFYINLG 83 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------KPQTGLMAAAREARYAL 109 + + ++ ++ +V K+ +P + RY Sbjct: 84 IGDYSQKSKELALKFAEKIGKTLHIVELKDEIATIPEMKTYDNRPACSICGT--IKRY-F 140 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167 +++ AK + +I T H DD+ V + +++ + + +L + N +I + Sbjct: 141 MNKKAKELGYDIIATGHNLDDEA-AVLFSNTLNWSVEYL---KRQYPVLKEENGFIRKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P + ++ + + I + E+ + + F+ ++ + K++ + + Sbjct: 197 PLCKISEKESAMYAILSGIEYIEEECPYSVGATSIDYKLFLSQLEEKSPGTKLRFYSEFL 256 Query: 228 VKV 230 K+ Sbjct: 257 RKM 259 >gi|270262062|ref|ZP_06190334.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera 4Rx13] gi|270043938|gb|EFA17030.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera 4Rx13] Length = 312 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K+ P+ + R ++ A + AT I H DD Sbjct: 94 ESLGVEYKIVEENTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + + Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFSVAKEFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|225175443|ref|ZP_03729438.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1] gi|225169195|gb|EEG77994.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1] Length = 233 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82 VA+SGG DS+ + + R +++ I++D K + D C L+I Sbjct: 2 AVAISGGKDSLLMAKLFQELQRQRQV-ELELEFIAMDPGYHPNIK---ELLIDNCKHLQI 57 Query: 83 AHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 + +K ++ G + R + A+ + + H FDD +ET + Sbjct: 58 PLHIFEADIFKIAQKIAGDYPCYMCAKMRRGALYTKAQEMGCNKLALGHHFDDVIETTML 117 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + K M L + + + RP + +DI F Sbjct: 118 NLLCAGSFKNM-LPKLKAKNF--AGMELIRPLYLIKEKDISRF 157 >gi|289192452|ref|YP_003458393.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp. FS406-22] gi|288938902|gb|ADC69657.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp. FS406-22] Length = 300 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 17/182 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + ILVAVSGG D L + ++ ++ +++ ++ V Sbjct: 43 KMIDKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIKGFSEESLKAV 95 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126 +++ +L + VV+ K+ +T ++ RY L++ +I+T H Sbjct: 96 NELAEKLEVPLHVVNLKDITGKTMEDIRGKKCSICGITKRY-LMNRFGYENGFDVIVTGH 154 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD++ + + + ++ + + +D L + F E I + NI Sbjct: 155 NLDDEV-SFILNNILNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAENI 212 Query: 187 SW 188 + Sbjct: 213 PY 214 >gi|229915473|gb|ACQ90818.1| tRNA-Ile lysidine synthase [Oocystis solitaria] Length = 425 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 29/232 (12%), Positives = 78/232 (33%), Gaps = 38/232 (16%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 ++L+ P IL+ S G DS+ L+I + ++ +++ + + +H ++ + + + Sbjct: 22 KNLINPQQKILIGFSAGQDSICLVIFFILI---KNQWELQINILWCNHFWQKESMNFFLH 78 Query: 73 VSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ +C +I + + R R + K ++T HT DQ Sbjct: 79 IAKICFYFKIKMFTTLPIFIP----NTEVRGRNWRSKISLRLLKFFIFNCLVTGHTASDQ 134 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS------------ 179 +ET R +G+ + + ++ Sbjct: 135 IETFLFNLSRGSGSQGLFALKWKKCLNVPKQKNFL-----FTKHNLIKLKKAKKIYKKHK 189 Query: 180 -----FLLQR-------NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 +L ++ + SN + + + + ++ + + +K Sbjct: 190 VKGKFYLNKKLKKEINEKLFVFIYSSNLQEIYLQNQNKKKIFHLLFKQFQIK 241 Score = 50.7 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 21/47 (44%) Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 ++ RP L+ R DI+ ++ D +N + R +R+ + Sbjct: 254 FVIRPLLKITRFDIKKICNFFDLPVYPDQTNQKKEYSRNFLRKKILP 300 >gi|237808949|ref|YP_002893389.1| PP-loop domain-containing protein [Tolumonas auensis DSM 9187] gi|259550668|sp|C4L8F7|TTCA_TOLAT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|237501210|gb|ACQ93803.1| PP-loop domain protein [Tolumonas auensis DSM 9187] Length = 302 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ + A+++D + EV Sbjct: 36 GDRVMVCLSGGKDSFAMLDILRNLQASAPI-NFDIVAVNLD-QKQPGFPPEVLP--QYLD 91 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + +V + R ++ A + AT I H DD Sbjct: 92 SIGVEYKIVEEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+ + G + + D + RP C +D+ + + Sbjct: 152 LETLMLNMF----YAGKLKAMPPKLVSDDGKHVVIRPLAYCHEKDLIRYAEWKEFPII-- 205 Query: 192 PSNT 195 P N Sbjct: 206 PCNL 209 >gi|319405658|emb|CBI79281.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 278 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 24/223 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 L I L L+A+SGG DS L +L + G + ++ + Sbjct: 34 LLRHIRQALDDFSMLSSGKKWLIALSGGKDS---YALLALLLDLKWRGLLSIDILACN-- 88 Query: 62 LRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113 L + +++ D + +I + + + + R + Sbjct: 89 LDQGQPAFPKHILPDFLNYYQIPYRIEYQDTYSIVTDKLTQTQTYCSLCSRLRRGHLYRI 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172 A+ + ++ H DD LET M L+ M ++ D +L++ RP + Sbjct: 149 AREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDEKDLFVLRPLIYA 203 Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212 EDI F P N D +R +++ + DI+ Sbjct: 204 AEEDIEKFSQAMQFPII--PCNFCGSQDGLQRNAMKKMLNDIE 244 >gi|229846776|ref|ZP_04466883.1| hypothetical protein CGSHi7P49H1_02093 [Haemophilus influenzae 7P49H1] gi|229810265|gb|EEP45984.1| hypothetical protein CGSHi7P49H1_02093 [Haemophilus influenzae 7P49H1] Length = 310 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 154 MLATLFLNMFYGGKIK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|16273282|ref|NP_439523.1| C32 tRNA thiolase [Haemophilus influenzae Rd KW20] gi|260580795|ref|ZP_05848621.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae RdAW] gi|2495599|sp|Q57184|TTCA_HAEIN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|1574205|gb|AAC23019.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092612|gb|EEW76549.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae RdAW] Length = 313 Score = 82.6 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKIK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|91793197|ref|YP_562848.1| PP-loop [Shewanella denitrificans OS217] gi|123166124|sp|Q12N51|TTCA_SHEDO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|91715199|gb|ABE55125.1| PP-loop [Shewanella denitrificans OS217] Length = 323 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 22/213 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ R+ + A+++D + ++ L +A+ Sbjct: 48 LSGGKDSYAMLDILLNLQK-RAPISFEIVAVNLD-QKQPG---FPEHILPAYLDNLGVAY 102 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ + R + A+ I AT I H DD +ET+++ Sbjct: 103 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 162 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195 G + + D + RP CR +DI + + P N Sbjct: 163 NMF----FAGKMKAMPPKLLSDDGANMVIRPLAYCREKDIAEYAKFKEFPII--PCNLCG 216 Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + +R V+ ++ D H F ++ Sbjct: 217 SQENLKRGAVKDMLKQWDKHHPGRIESIFTAMQ 249 >gi|303256269|ref|ZP_07342285.1| PP-loop family protein [Burkholderiales bacterium 1_1_47] gi|302860998|gb|EFL84073.1| PP-loop family protein [Burkholderiales bacterium 1_1_47] Length = 301 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 17/175 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS LL AL + R+ + + A ++ L + D R ++ + Sbjct: 64 GDKVMVCVSGGKDSYALLDALVRLQ-GRAPIRFELLAFCLNQHLPDFPLD--RLIAHL-E 119 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + + + + L + R +I A+ T I H DD Sbjct: 120 KIGVPYHIEDQDTFSIVKSKYSDNRNLCSLCSRLRRGIIYRVAREQKCTKIALGHHLDDV 179 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 + T+ + G L M +L D I RP + R +D+ + + Sbjct: 180 VSTLMLNMF-----YGGRLKSMPPKLLSDAKEHIVIRPLVYLREKDLARWCRIKG 229 >gi|165918877|ref|ZP_02218963.1| PP-loop family protein [Coxiella burnetii RSA 334] gi|165917425|gb|EDR36029.1| PP-loop family protein [Coxiella burnetii RSA 334] Length = 256 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 27 GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +I + +++ + R +I +A+ + I H DD Sbjct: 83 DKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T+ M + + S + + + RP C+ DI + +++ Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHLLIRPLAYCQERDIIKYAMEQQFPLI-- 196 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ +R+ V+ + K ++ ++N + + + R + Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253 >gi|330998964|ref|ZP_08322689.1| PP-loop family protein [Parasutterella excrementihominis YIT 11859] gi|329575706|gb|EGG57232.1| PP-loop family protein [Parasutterella excrementihominis YIT 11859] Length = 301 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 17/175 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V VSGG DS LL AL + R+ + + A ++ L + D R ++ + Sbjct: 64 GDKVMVCVSGGKDSYALLDALVRLQ-GRAPIRFELLAFCLNQHLPDFPLD--RLIAHL-E 119 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ + + + + L + R +I A+ T I H DD Sbjct: 120 KIGVPYHIEDQDTFSIVKSKYSDNRNLCSLCSRLRRGIIYRVAREQKCTKIALGHHLDDV 179 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185 + T+ + G L M +L D I RP + R +D+ + + Sbjct: 180 VSTLMLNMF-----YGGRLKSMPPKLLSDAKEHIVIRPLVYLREKDLARWCRIKG 229 >gi|332704481|ref|ZP_08424569.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332554630|gb|EGJ51674.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 311 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 23/205 (11%) Query: 2 FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 FL + ++ ILVA+SGG DS+ L+ L + + V Sbjct: 27 FLYFRRQIERAIKKHGMFGPQDKILVALSGGKDSLALMYELAD-------QGYDVTGLHV 79 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------QTGLMAAAREARYAL 109 + +++ V C++ + + + + + Sbjct: 80 YLGIGRSSEQARHLVESFCAKHGFKLMIADMPAEGLAIPEVKECISRPICSVCGKIKRHY 139 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRP 168 + A T + T H DD++ ++ + R LS T+ D +P Sbjct: 140 FNRIALEHGFTALATGHNLDDEVARLFANTLR---WDAAYLSDQGPTLSEDSGFARKVKP 196 Query: 169 FLRCRREDIRSFLLQRNISWCEDPS 193 R + ++ R I + DP Sbjct: 197 LYRLTEFETAAYSFLRGIDYGVDPC 221 >gi|254449152|ref|ZP_05062603.1| hypothetical protein GP5015_1695 [gamma proteobacterium HTCC5015] gi|198261266|gb|EDY85560.1| hypothetical protein GP5015_1695 [gamma proteobacterium HTCC5015] Length = 298 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 22/229 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L S+ + A+++D + ++ D Sbjct: 34 GDRVMVCLSGGKDSYTMLEILRSLQQSAPVS-FELFAVNLD-QKQPG---FPEHILPDYL 88 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + H ++ R + +A+ T I H DD Sbjct: 89 NSIDMPHHIIERDTYSVVKRVIPEGKTTCGLCSRLRRGTLYGYAEEHGFTKIALGHHRDD 148 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ G S + D + RP C+ DI + ++ Sbjct: 149 MIETLFLNMF----YAGKMKSMPPKLLSDDGKNMVIRPLAYCKEADIADYAEAKDFPII- 203 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N + +R ++ +RD D F L+ + +A Sbjct: 204 -PCNLCGSQPKLQRQEIKAMLRDWDKQFPGRIETIFSALQSVAPSQLAD 251 >gi|254975987|ref|ZP_05272459.1| hypothetical protein CdifQC_11769 [Clostridium difficile QCD-66c26] gi|255093375|ref|ZP_05322853.1| hypothetical protein CdifC_12054 [Clostridium difficile CIP 107932] gi|255315120|ref|ZP_05356703.1| hypothetical protein CdifQCD-7_12247 [Clostridium difficile QCD-76w55] gi|255517790|ref|ZP_05385466.1| hypothetical protein CdifQCD-_11811 [Clostridium difficile QCD-97b34] gi|255650905|ref|ZP_05397807.1| hypothetical protein CdifQCD_12011 [Clostridium difficile QCD-37x79] gi|260683976|ref|YP_003215261.1| hypothetical protein CD196_2241 [Clostridium difficile CD196] gi|260687636|ref|YP_003218770.1| hypothetical protein CDR20291_2288 [Clostridium difficile R20291] gi|306520791|ref|ZP_07407138.1| hypothetical protein CdifQ_13896 [Clostridium difficile QCD-32g58] gi|260210139|emb|CBA64296.1| conserved hypothetical protein [Clostridium difficile CD196] gi|260213653|emb|CBE05492.1| conserved hypothetical protein [Clostridium difficile R20291] Length = 286 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHC 61 ++S+R + + + I VA+SGG DS+ + + + G++ F I++D Sbjct: 39 KFMKSIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQEL---KKHGQVNFDVEFIAMDPG 94 Query: 62 LRETAKDEVRYVSDV----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112 + + C L I + + + R + Sbjct: 95 YHAN-------IRQLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYS 147 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ + + H +DD +ET + L + T + I RP Sbjct: 148 KAEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYI 204 Query: 173 RREDIRSFLLQRNI 186 R E I F+ I Sbjct: 205 REEHIIRFIQNSGI 218 >gi|226941600|ref|YP_002796674.1| PP-loop superfamily ATPase MesJ [Laribacter hongkongensis HLHK9] gi|226716527|gb|ACO75665.1| PP-loop superfamily ATPase MesJ [Laribacter hongkongensis HLHK9] Length = 319 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 19/186 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS LL L + A+++D + ++V Sbjct: 43 AGDRVMVCLSGGKDSYALLDILLGLQKSAPI-DFSIVAVNLD-QKQPGFPEDVLPA--YL 98 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V + R ++ A + AT I H DD Sbjct: 99 ESLGVEYHIVEEDTYSIVKRLVPEGKTTCSLCSRLRRGVLYRVAGELGATKIALGHHRDD 158 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L+T+++ G L M +L D + RP CR +DI + R Sbjct: 159 ILQTLFLNMF-----YGGKLKAMPPKLLSDNGKHVVIRPLAYCREKDIERYAGLREFPII 213 Query: 190 EDPSNT 195 P N Sbjct: 214 --PCNL 217 >gi|126460621|ref|YP_001056899.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250342|gb|ABO09433.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548] Length = 290 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 17/194 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++R + R + I VAVSGG DS L L + + + A+ ++ + Sbjct: 25 ETIRRY-RLVEMGDVIYVAVSGGKDSCAALSLLREYVEEYRV-DAEVKALHINLGF-GYS 81 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKN--------SKPQTGLMAAAREARYALISEHAKTIN 118 V L + V K+ + + + ++++ + + Sbjct: 82 PKLEEIVKRQAEALGVELHVAYAKDYLDILAASKASGRPICSVCGAVKRYIMNKVPRELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRRED 176 AT + T H D ++ A + + + L + RP + R E+ Sbjct: 142 ATKVATGHHMYD----FLAYYFKNLAGQNHQWNFKILPKVEGRGLLLTKIRPLIFARPEE 197 Query: 177 IRSFLLQRNISWCE 190 ++ + + E Sbjct: 198 NEAYCKSKGLPVNE 211 >gi|301170124|emb|CBW29728.1| predicted C32 tRNA thiolase [Haemophilus influenzae 10810] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|260582701|ref|ZP_05850489.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae NT127] gi|260094267|gb|EEW78167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae NT127] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|229844169|ref|ZP_04464310.1| hypothetical protein CGSHi6P18H1_07036 [Haemophilus influenzae 6P18H1] gi|229813163|gb|EEP48851.1| hypothetical protein CGSHi6P18H1_07036 [Haemophilus influenzae 6P18H1] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KYDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|145636081|ref|ZP_01791751.1| DNA topoisomerase I [Haemophilus influenzae PittHH] gi|145270603|gb|EDK10536.1| DNA topoisomerase I [Haemophilus influenzae PittHH] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|145632883|ref|ZP_01788616.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae 3655] gi|144986539|gb|EDJ93105.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae 3655] Length = 276 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 5 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 60 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 174 Query: 191 DPSNT 195 P N Sbjct: 175 -PCNL 178 >gi|145639032|ref|ZP_01794640.1| hypothetical protein CGSHiII_02560 [Haemophilus influenzae PittII] gi|145272004|gb|EDK11913.1| hypothetical protein CGSHiII_02560 [Haemophilus influenzae PittII] gi|309750991|gb|ADO80975.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Haemophilus influenzae R2866] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|309973056|gb|ADO96257.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Haemophilus influenzae R2846] Length = 313 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|312876099|ref|ZP_07736087.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311797085|gb|EFR13426.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 310 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 11/171 (6%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----- 212 + + I+RP + RE+I F NI + D +N +++R VR + + Sbjct: 7 VPPVRDIIARPLINISREEIEEFARVNNIPFVVDKTNFSLKYKRNIVRNEILSLIKEKFG 66 Query: 213 ---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269 L+ ++ ++ ++ ++ + + + + N+ L +++ Sbjct: 67 ESVLNTIFRTVEIIREESDQIEELAQKSFEECVQKEDIYYVLNIEKTKNLPVFLQRRIIK 126 Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320 + IS + +E + L SGK+ + +V++R+ + L R Sbjct: 127 MILKYFNAPISYDILKEIEEL-ASLSSGKKKVYN--ELVVERQNDELVFYR 174 >gi|289547809|ref|YP_003472797.1| PP-loop domain protein [Thermocrinis albus DSM 14484] gi|289181426|gb|ADC88670.1| PP-loop domain protein [Thermocrinis albus DSM 14484] Length = 311 Score = 82.3 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 35/248 (14%) Query: 7 ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 E V+ ++ + +LVAVSGG DS+ L LH + + + +D + Sbjct: 33 ERVQRTIKQFGMMEKRDRVLVAVSGGKDSLSLWQVLHRL-------GYEADGLYIDLGIG 85 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYALIS 111 + + R+ +V +S+P + RY ++ Sbjct: 86 DYSAKSKELCKKFSERIGRKLHIVDLSQELSTIPQIKQLDSRPACSFCGS--IKRY-YMN 142 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISR 167 +AK + T++ T H DD ET + L + D + + Sbjct: 143 LYAKKLGYTVVATGHNLDD--ETAVL----LSNVLSWNLQYLERQTPLLEEKDGFVRKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P + + + NI + E+ + + ++ + I+ + K++ + + Sbjct: 197 PLCLLTERETALYAVVTNIDYIEEECPFAENATSIDYKKIMAQIEEKSPGTKLRFYLEFL 256 Query: 228 VKVNNAVA 235 KV A++ Sbjct: 257 RKVRPALS 264 >gi|326437533|gb|EGD83103.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salpingoeca sp. ATCC 50818] Length = 1135 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 25/182 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVD-----HCLRETAKDEVR 71 +LV VSGG DS+ LL + ++ A +VD + R Sbjct: 883 GDRVLVCVSGGKDSLTLLHTMKQAQYVFRAQGVRFELGAATVDPGTEAYNPRP------- 935 Query: 72 YVSDVCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + + L + + + N + + + + A+ ++M Sbjct: 936 -LVEYMKALGVPYFYESQCIIDAASNVDNLASICSFCSRMKRGRLYACARREGYNVLMFG 994 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E+ M + + + + + +L ++RPF+ R +DIR+F + Sbjct: 995 QHLDDLAESFMMSLFHNGFLR----TMKAHYTVQEGDLRMARPFVFVREKDIRAFAEDAD 1050 Query: 186 IS 187 ++ Sbjct: 1051 VA 1052 >gi|319784053|ref|YP_004143529.1| PP-loop domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169941|gb|ADV13479.1| PP-loop domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 295 Score = 82.3 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 23/232 (9%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F S+V P LVA+SGG DS GLL L + R + A ++D + Sbjct: 46 QAIEDF--SMVKPGQRWLVALSGGKDSYGLLAVLLDL-KWRGLLPVDLLACNLDQG-QPN 101 Query: 66 AKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +++ D IAH + V + + R + A+ Sbjct: 102 ---FPKHILPDYLDSHGIAHRIEYQDTYSVVTDKLPAGSTYCSLCSRLRRGHLYRIAREE 158 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRRED 176 + ++ H +D LET +M L+ M +L D + + RP C D Sbjct: 159 GCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCAEVD 213 Query: 177 IRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + F D + + +R ++ + D++ K + L Sbjct: 214 LEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDLEKRMPGRKDTMLRALS 265 >gi|146307984|ref|YP_001188449.1| PP-loop domain-containing protein [Pseudomonas mendocina ymp] gi|205830613|sp|A4XWK1|TTCA_PSEMY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|145576185|gb|ABP85717.1| PP-loop domain protein [Pseudomonas mendocina ymp] Length = 274 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 24/206 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76 ++V +SGG DS +L L + IKF ++V+ + +V Sbjct: 32 GDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85 Query: 77 CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + +A+ ++ + R + +A I AT + H D Sbjct: 86 LESIGVAYHIIEKDTYSVVKEKIPEGKTTCSLCSRLRRGTLYTYADEIGATKMALGHHRD 145 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D LET ++ G L M +L D + RP C DI ++ + Sbjct: 146 DILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCAEADIEAYSQLKEFPI 200 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + R+ V+++ Sbjct: 201 I--PCNLCGS-QENLQRQVVKEMLQE 223 >gi|307302658|ref|ZP_07582414.1| PP-loop domain protein [Sinorhizobium meliloti BL225C] gi|307318505|ref|ZP_07597939.1| PP-loop domain protein [Sinorhizobium meliloti AK83] gi|205830653|sp|Q92PH1|TTCA_RHIME RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|306895845|gb|EFN26597.1| PP-loop domain protein [Sinorhizobium meliloti AK83] gi|306903022|gb|EFN33613.1| PP-loop domain protein [Sinorhizobium meliloti BL225C] Length = 294 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 78/239 (32%), Gaps = 29/239 (12%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59 + VR + L LV VSGG DS LL L + R ++ A ++D Sbjct: 44 RLLRQVRQALDDFGMLKGSRRWLVGVSGGKDSYSLLALLMDLQ-WRGLLPVELVACNLDQ 102 Query: 60 -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108 H L Y+ + + RI + +V K T + R Sbjct: 103 GQPNFPKHVL-------PDYLRSIGVKHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 154 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + + ++ H +D LET +M G S + + +L + RP Sbjct: 155 NLYRIGREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRP 210 Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +D+ F D + D ER ++ + DI+ K + L Sbjct: 211 LAYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 269 >gi|315634290|ref|ZP_07889577.1| PP-loop family protein [Aggregatibacter segnis ATCC 33393] gi|315476880|gb|EFU67625.1| PP-loop family protein [Aggregatibacter segnis ATCC 33393] Length = 310 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 ++V +SGG DS LL L ++ + A+++D + + + Y+ + Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLQQNAPV-NFDIVAVNLD-QKQPGFPEHILPEYLQSI 96 Query: 77 CSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +I +V K + +T + R ++ A + AT I H DD L Sbjct: 97 GVNYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDML 155 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191 T+++ G L M ++ D I RP C+ +DI + + + Sbjct: 156 ATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII-- 208 Query: 192 PSNT 195 P N Sbjct: 209 PCNL 212 >gi|110633624|ref|YP_673832.1| PP-loop [Mesorhizobium sp. BNC1] gi|122966063|sp|Q11IV8|TTCA_MESSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|110284608|gb|ABG62667.1| PP-loop [Chelativorans sp. BNC1] Length = 284 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 23/229 (10%) Query: 4 SPIESVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR +V P LVA+SGG DS GLL L + R ++ A ++D Sbjct: 37 RLLRQVRQAFEDFTMVKPGDRWLVALSGGKDSYGLLAVLLDL-KWRGLLPVELLACNLD- 94 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + +++ D +RL + H + V + + R + Sbjct: 95 QGQPN---FPKHILPDYLTRLGVPHRIEYQDTYSVVTEKIPENRTYCSLCSRLRRGHLYR 151 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171 A+ + ++ H +D LET +M L+ M +L D + + RP Sbjct: 152 IAREEGCSSLVLGHHREDILETFFMNFFHGGR-----LAAMPPKLLNDEGDVLVLRPLAY 206 Query: 172 CRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 C D+ F D + D +R ++ + DI+ K Sbjct: 207 CAETDLVKFAEGMKFPIIPCDLCGSQDGLQRNAMKAMLEDIERRMPGRK 255 >gi|325971461|ref|YP_004247652.1| PP-loop domain protein [Spirochaeta sp. Buddy] gi|324026699|gb|ADY13458.1| PP-loop domain protein [Spirochaeta sp. Buddy] Length = 249 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 38/208 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--------- 72 +L++ SGG DS+ L +AL S+ + A+ ++ + + Sbjct: 41 VLLSASGGKDSLALALAL-SIRRNWLPITYNLKALMIN---------WIEHPIPDEFREK 90 Query: 73 VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ + L ++V K + +R R L + + + L+ H Sbjct: 91 LTTYFTDLGYDFTIVDEHQYPESFKGEFNCYLCSRNRRRVLFNY-CEEHSIGLVAMGHHL 149 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD +ET M + + +D + I RP + + ++ Sbjct: 150 DDLVETSLMNLC----FRANFSTMQPVQPFFDGKIHIIRPMIEIHESVTQRLADVYDLPV 205 Query: 189 CE-----DPSNTDDRFERVRVRRFVRDI 211 + D +N R R++ ++D+ Sbjct: 206 VKPVCPYDQTN-----IRARLKPIIKDL 228 >gi|154705798|ref|YP_001424532.1| C32 tRNA thiolase [Coxiella burnetii Dugway 5J108-111] gi|205830574|sp|A9KE14|TTCA_COXBN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|154355084|gb|ABS76546.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii Dugway 5J108-111] Length = 256 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 27 GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +I + +++ + R +I +A+ + I H DD Sbjct: 83 DKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T+ M + + S + + + RP C+ DI + +++ Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQFPLI-- 196 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ +R+ V+ + K ++ ++N + + + R + Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253 >gi|261414858|ref|YP_003248541.1| PP-loop domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371314|gb|ACX74059.1| PP-loop domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327597|gb|ADL26798.1| conserved hypothetical protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 286 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 15/192 (7%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F++ I++ + + I V +SGG DSM L+ L +L S K + +D Sbjct: 27 FITAIKNYKL----IEEGDKIAVCISGGKDSM-LMAKLIQMLHRHSDVKFDVEYLVMDPG 81 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 E + + + L I +V + + + R + AK + Sbjct: 82 YNEINR---QKIESNAKLLEIPITVFETNIFDVANNTERSPCYVCAKMRRGHLYHKAKDL 138 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 I H D +ET M +GM ++ + + + RP +DI Sbjct: 139 GCNKIALGHHLSDVIETTVMAMFYGSQLQGM--MPKLHSLNFG-GMELIRPMYCINEQDI 195 Query: 178 RSFLLQRNISWC 189 ++ + + Sbjct: 196 INWKNYNGLQFI 207 >gi|145641388|ref|ZP_01796967.1| DNA topoisomerase I [Haemophilus influenzae R3021] gi|145273931|gb|EDK13798.1| DNA topoisomerase I [Haemophilus influenzae 22.4-21] Length = 313 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 22/220 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIRVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLTYCKEKDIEKYAIAKEFPII- 211 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N +R V+ + + D F ++ Sbjct: 212 -PCNLCGSQPNLQRQVVKEMLNNWDRQYPGRLETMFSAMQ 250 >gi|293396003|ref|ZP_06640284.1| PP-loop family protein [Serratia odorifera DSM 4582] gi|291421501|gb|EFE94749.1| PP-loop family protein [Serratia odorifera DSM 4582] Length = 312 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS +L L ++ A+++D + ++ Sbjct: 39 GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLIAVNLD-QKQPG---FPEHILPAYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 DGLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L+T+++ KGM M D D + RP CR +DI F + + Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAKEYPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|153207650|ref|ZP_01946314.1| PP-loop family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218511|ref|YP_002305298.1| C32 tRNA thiolase [Coxiella burnetii CbuK_Q154] gi|254789872|sp|B6J7A4|TTCA_COXB1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120576469|gb|EAX33093.1| PP-loop family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212012773|gb|ACJ20153.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii CbuK_Q154] Length = 256 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 27 GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +I + +++ + R +I +A+ + I H DD Sbjct: 83 DKKIPYEILTRDTYSIVKEKIPAGKMYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 ++T+ M + + S + + + RP C+ DI + +++ Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQFPLI-- 196 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ +R+ V+ + K ++ ++N + + + R + Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253 >gi|300313690|ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum seropedicae SmR1] gi|300076475|gb|ADJ65874.1| ATPase of the PP-loop superfamily implicated in cell cycle control protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 25/211 (11%) Query: 15 SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 ++ +++A SGG+DS +L L + S K + A+++D + ++ Sbjct: 59 DMIRDGDVIMACMSGGADSYTMLDTLRYLQSVAPV-KFEIIAVNLD-QKQPG---FPEHI 113 Query: 74 S-DVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTA 125 + R+ + + +V P + R ++ AK + AT I Sbjct: 114 LPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALG 173 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184 H DD L T + G + M ++ D + RP R DI+ + Sbjct: 174 HHRDDILHTFMLNMF-----YGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAM 228 Query: 185 NISWCEDPSNT---DDRFERVRVRRFVRDID 212 P N +R +R + + + Sbjct: 229 QFPII--PCNLCGSQPNLQRQAMREMLNEWE 257 >gi|256821945|ref|YP_003145908.1| PP-loop domain-containing protein [Kangiella koreensis DSM 16069] gi|256795484|gb|ACV26140.1| PP-loop domain protein [Kangiella koreensis DSM 16069] Length = 305 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 17/184 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS LL L + + A+++D + ++V + Sbjct: 41 GDKIMVCLSGGKDSYTLLDILMGLQKSAPVS-FELIAVNLD-QKQPGFPEQVLP--NYLK 96 Query: 79 RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + + ++ + + R +I A+ T I H DD Sbjct: 97 SVGVPYEIIEEDTYSVVKSIIPEGKTTCSLCSRLRRGIIYSWAEQNGITKIALGHHRDDI 156 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ K S D + RP C+ +DI F + Sbjct: 157 IETLFLNMFFGGKMK----SMPPKLKSDDGKHIVIRPLAYCKEKDIAKFAKLKEFPII-- 210 Query: 192 PSNT 195 P N Sbjct: 211 PCNL 214 >gi|34499586|ref|NP_903801.1| hypothetical protein CV_4131 [Chromobacterium violaceum ATCC 12472] gi|81654212|sp|Q7NQK6|TTCA_CHRVO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|34105437|gb|AAQ61792.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 319 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 22/229 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L + I FS ++V+ L + +V + Sbjct: 41 GDRVMVCLSGGKDSYTLLDILRGLQKS---APINFSIVAVN--LDQKQPGFPEHVLPEYL 95 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V + R ++ A + AT I H DD Sbjct: 96 KSIGVEYRIVEEDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 155 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K M + D + RP CR +DI + + Sbjct: 156 ILHTLFLNMFYGGKMKAM----PPKLVSDDGRHMVIRPLAYCREKDIIRYADWKAFPII- 210 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236 P N +R V+ V D D F+ L+ V + +A Sbjct: 211 -PCNLCGSQPNLQRQVVKEMVNDWDKRFPGRVESMFRALQNVVPSHLAD 258 >gi|311695007|gb|ADP97880.1| PP-loop domain protein [marine bacterium HP15] Length = 304 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 15/176 (8%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSRLRI- 82 +SGG DS +L L ++ + A+++D + +EV Y+S + I Sbjct: 56 LSGGKDSYAMLDILLNLQKSAPVS-FELIAVNLD-QKQPGFPEEVLPEYLSSMGIEYHII 113 Query: 83 ---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139 +S+V K + +T R ++ A+ T I H DD LET+++ Sbjct: 114 EKDTYSIVKEKVPEGKT-TCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFLNM 172 Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 K M D D + RP R +DI + R P N Sbjct: 173 FYGGKLKSMPPVLHSD----DGRNTVIRPLAYSREKDIARYAGLREFPII--PCNL 222 >gi|212696527|ref|ZP_03304655.1| hypothetical protein ANHYDRO_01065 [Anaerococcus hydrogenalis DSM 7454] gi|212676463|gb|EEB36070.1| hypothetical protein ANHYDRO_01065 [Anaerococcus hydrogenalis DSM 7454] Length = 123 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +E R + I+V SGG DS L+ L+ + + F KI ++H Sbjct: 11 FKNTVEKHRLIEEN----DTIIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHM 63 Query: 62 LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 R+ A D+ V + +L ++H + + + A R RY + K + Sbjct: 64 HRKDAIDDENLVIETGKKLSLKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKKL 123 >gi|291287571|ref|YP_003504387.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884731|gb|ADD68431.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 298 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 27/206 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ +E + + I+V +SGG DS+ L LH + + + I Sbjct: 30 FIKQVEKGIKEYKMFDFSDKIMVCISGGKDSLVLWYLLHKMGYETTGMYINL-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYAL 109 + E ++ +R V + + +V+ + + A RY Sbjct: 83 IGEYSEKSLRKVEAFTEKFGLKAVIVNLTELGHPIPLLEKSVKRHACSICGIA--KRY-Y 139 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISR 167 ++ A N ++ T H DD+ + + LS M + + + + Sbjct: 140 FNKVAYENNFDVVATGHNLDDESARLLGNVLK---WDPAYLSKMDPNLPEEGDYIKRKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPS 193 P +R ++ +F I + D Sbjct: 197 PLIRLTELEVGAFAFMNGIDYITDEC 222 >gi|171464268|ref|YP_001798381.1| PP-loop domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|254790150|sp|B1XSG8|TTCA_POLNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|171193806|gb|ACB44767.1| PP-loop domain protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 302 Score = 81.9 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 24/221 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----------AK 67 ++V VSGG DS +L L + +R+ + A+++D + + Sbjct: 35 GDKVMVCVSGGKDSYAMLDLLMKL-RERAPINFEIVAVNLD-QKQPNFPTNILPNYLKSL 92 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 D ++ + I V+ + K GL + R ++ A + AT I H Sbjct: 93 DIQYHIEEQ-DTYSIVKRVIP--DGKTTCGLCS---RLRRGILYRVADELGATKIALGHH 146 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD LET+ + KGM D + RP + + + N Sbjct: 147 RDDILETLMLNMFYAGKLKGM----PPKLRSDDGKHIVIRPLAYVPEKLLERYSADMNFP 202 Query: 188 WC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D + +R ++ +RD + F+ + Sbjct: 203 IIPCDLCGSQPNLQRQVMKEMLRDWEKKHPGRVENLFRSMH 243 >gi|317154147|ref|YP_004122195.1| PP-loop domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316944398|gb|ADU63449.1| PP-loop domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 309 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E+ + + ILVA+SGG DS+ L++ L + + + +D Sbjct: 30 FTRQVETAIRREKMFTHEERILVALSGGKDSLSLMLELAA-------QGYDVTGLHIDLG 82 Query: 62 LRETAKDEVR-YVSDVCSRLRIAHSVVSWKNSK---------PQTGLMAAAREARYALIS 111 + + R V CS + V+ + + + + + Sbjct: 83 I-PGSSPSARVKVEAFCSSHGLKLEVLEMEKEGLPIPDIKAYVNRPVCSVCGRIKRHHFN 141 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL 170 A + T H DD++ ++ + R LS T+ + +P Sbjct: 142 RIAMEGGYDALATGHNLDDEVARLFANTLR---WDTAYLSDQGPTLPAREGFVRKVKPLF 198 Query: 171 RCRREDIRSFLLQRNIS 187 R + ++ + I Sbjct: 199 RLSEFETANYAFLKGIE 215 >gi|126724912|ref|ZP_01740755.1| hypothetical protein RB2150_13791 [Rhodobacterales bacterium HTCC2150] gi|126706076|gb|EBA05166.1| hypothetical protein RB2150_13791 [Rhodobacterales bacterium HTCC2150] Length = 279 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 15/175 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 A +V +SGG DS LL LH + RS + A+++D + + Sbjct: 44 RGARWMVCMSGGKDSYTLLAVLHELQ-WRSLLPVDILAVNLD---QGQPGFPATVLPKFL 99 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S + H + + + R + + A+ + I+ H DD Sbjct: 100 SDKGVPHRIEYQDTYSIVMDKVPAGRTFCSLCSRLRRSHLYRIAREEGCSAIVLGHHRDD 159 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 LET +M G + + + +L++ RP D F N Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFAQALN 210 >gi|15965538|ref|NP_385891.1| hypothetical protein SMc00534 [Sinorhizobium meliloti 1021] gi|15074719|emb|CAC46364.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 313 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 78/239 (32%), Gaps = 29/239 (12%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59 + VR + L LV VSGG DS LL L + R ++ A ++D Sbjct: 63 RLLRQVRQALDDFGMLKGSRRWLVGVSGGKDSYSLLALLMDLQ-WRGLLPVELVACNLDQ 121 Query: 60 -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108 H L Y+ + + RI + +V K T + R Sbjct: 122 GQPNFPKHVL-------PDYLRSIGVKHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 173 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + + ++ H +D LET +M G S + + +L + RP Sbjct: 174 NLYRIGREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRP 229 Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 +D+ F D + D ER ++ + DI+ K + L Sbjct: 230 LAYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 288 >gi|145629546|ref|ZP_01785344.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae 22.1-21] gi|144978389|gb|EDJ88153.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus influenzae 22.1-21] Length = 310 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 39 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIRVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|285016886|ref|YP_003374597.1| hypothetical protein XALc_0065 [Xanthomonas albilineans GPE PC73] gi|283472104|emb|CBA14611.1| hypothetical protein XALc_0065 [Xanthomonas albilineans] Length = 287 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 13/178 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYV 73 + ++V +SGG DS LL L + + A+++D + +V Y+ Sbjct: 43 IAAGDKVMVCLSGGKDSYTLLDILLQLQRKAPVP-FELVAVNLD-QKQPGFPADVLPDYL 100 Query: 74 SDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + V + L + R + +A + I H DD Sbjct: 101 RKRGVAWDVIEQDTYSVVTRVVPEGKTLCSLCSRLRRGALYRYAAEHGISKIALGHHCDD 160 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187 + T +M L+ M + D + RP R DI ++ R+ Sbjct: 161 MVATFFMNLF-----FHAKLAAMAPLLRSDDGQHVVIRPLAYVREHDIAAYAQARHFP 213 >gi|289209738|ref|YP_003461804.1| PP-loop domain protein [Thioalkalivibrio sp. K90mix] gi|288945369|gb|ADC73068.1| PP-loop domain protein [Thioalkalivibrio sp. K90mix] Length = 269 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 18/219 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVC 77 ILV +SGG DS+ L+ L L+ R+ + + A++++ E + + D Sbjct: 31 GDRILVGLSGGKDSLT-LLWLLHNLARRAPVRFEVGAVTIN----PEIEGFEPQRLMDYL 85 Query: 78 SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I + VS ++ + + L+ A+ ++ DD Sbjct: 86 GGYGIPYHFVSEPIAELAGEHMDNDSFCSFCSRMKRGLMYRTAREHGYNVLALGQHLDDL 145 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 E+ M + + M D +L + RP + R R F + D Sbjct: 146 AESFMMSAFHGGQLRTMKAHYAID----AGDLRVIRPLVYVRERQTRDFAEAAGLPVILD 201 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 N F R ++ + + F++LR + Sbjct: 202 --NCPACFAMPTQREHMKQLLAQEEAQHPRLFRNLRTTL 238 >gi|30468051|ref|NP_848938.1| cell-cycle protein mesJ family [Cyanidioschyzon merolae strain 10D] gi|61216632|sp|Q85G85|TILS_CYAME RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|30409151|dbj|BAC76100.1| cell-cycle protein mesJ family [Cyanidioschyzon merolae strain 10D] Length = 290 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 20/190 (10%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81 L+A+SGG DS+ LL +H ++ + A V Y+S Sbjct: 29 LLAISGGQDSLCLLKFMHDLVHHHLVVVHFDH------RWSCSLAALRVYYLSRYM---- 78 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 H + + AR+ RYA + + ++ I TAHT D LET + Sbjct: 79 --HLAWRYFRTALPITTEQDARQYRYANLIQLLYQTHSHAICTAHTASDDLETYLDQWIS 136 Query: 142 DYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200 +G+ L + + + + RP L R F L + D SN F+ Sbjct: 137 LRHPEGIWRLCHLSGSQI------LFRPLLHLTRAQTHWFTLVHYLPIWSDVSNYQITFK 190 Query: 201 RVRVRRFVRD 210 R ++R + Sbjct: 191 RNQLRHQLIP 200 >gi|310823887|ref|YP_003956245.1| tRNA 2-thiocytidine biosynthesis protein ttca [Stigmatella aurantiaca DW4/3-1] gi|309396959|gb|ADO74418.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Stigmatella aurantiaca DW4/3-1] Length = 279 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 16/219 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I+V VSGG DS LL L + R+ + + A+++D + + Sbjct: 25 IQEGDRIMVGVSGGKDSYTLLYLLREMQR-RAPVRFELLAVNLD---QGHPGFPADTLEG 80 Query: 76 VCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + + + P + R ++ A + T I H Sbjct: 81 YFQKEGYPYKMLKEDTYSIVLEKTPPGKTQCSVCSRMRRGILYTAAVELGCTKIALGHHR 140 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD + T+ + G + D + RP ++I F + Sbjct: 141 DDLIHTLLLNLF----FAGSLKAMPPLLRSDDGRNTVIRPLCYAPEKEIAQFAELKGFPI 196 Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + + +R R++R V ++ ++ + Sbjct: 197 IPCDLCGSQENLQRKRMQRLVEELGREIPNVRQSLLSAM 235 >gi|330823185|ref|YP_004386488.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alicycliphilus denitrificans K601] gi|329308557|gb|AEB82972.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alicycliphilus denitrificans K601] Length = 310 Score = 81.5 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + R+ K A+++D + +V D Sbjct: 50 GDRIMVCMSGGKDSYTLLDILRRLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 104 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + + R A++ + A + T + H DD Sbjct: 105 KSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELGCTKLALGHHRDD 164 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T+ + KGM + D + RP +D + + Sbjct: 165 IVATLMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPII- 219 Query: 191 DPSNT 195 P N Sbjct: 220 -PCNL 223 >gi|171056792|ref|YP_001789141.1| C32 tRNA thiolase [Leptothrix cholodnii SP-6] gi|205830600|sp|B1Y629|TTCA_LEPCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|170774237|gb|ACB32376.1| PP-loop domain protein [Leptothrix cholodnii SP-6] Length = 326 Score = 81.5 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 19/250 (7%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS G+L L + R+ A+++D ++ + Sbjct: 52 IQEGDRVMVCLSGGKDSYGMLDILLGLQ-QRAPITFSIVAVNLD---QKQPGFPEHILPA 107 Query: 76 VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + + + + R ++ A + AT I H Sbjct: 108 YLKARGVEFHIENQDTYSIVKRVIPEGKTMCSLCSRLRRGILYRVADELGATKIALGHHR 167 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD L TV++ KGM + D + RP D+ + R Sbjct: 168 DDFLGTVFLNMFFGSKLKGM----PPKLVSDDGRHTVIRPLAYVAETDLERWAEHRAFPI 223 Query: 189 CEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV--NNAVAMLIPKYLTVH 245 T D +RV+++ +RD D ++ +V ++ + + + T+ Sbjct: 224 IPCTLCGTQDNLQRVQIKHMLRDWD-QRFPGRIDNMHRAFSQVVPSHLMDRALFPFETLV 282 Query: 246 MRSIIAISQD 255 + + D Sbjct: 283 PTGVADPAGD 292 >gi|160878340|ref|YP_001557308.1| PP-loop domain-containing protein [Clostridium phytofermentans ISDg] gi|160427006|gb|ABX40569.1| PP-loop domain protein [Clostridium phytofermentans ISDg] Length = 288 Score = 81.5 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 51/218 (23%) Query: 10 RFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI------- 56 R FV++ + I V +SGG DSM L + + GKI F + Sbjct: 21 RPFVKAVQEYELIKEGDKIAVCISGGKDSMLLAKCMQELQK---HGKIPFELVFLVMDPG 77 Query: 57 --SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI 110 ++ R+T + + L I + ++ R + Sbjct: 78 YNEIN---RQT-------IINNAKLLNIPIEIFESNIFDIVAEVDESPCYLCARMRRGYL 127 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLW 164 ++AK I H FDD +ET+ M GM SG T++ L + Sbjct: 128 YKNAKAHGCNKIALGHHFDDVIETILM---------GMLYSGQIQTMMPKLHSTNFEGME 178 Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202 + RP + + I + + + + RF Sbjct: 179 LIRPMYYVKEDAILHWKQFHELQFIQCAC----RFTEN 212 >gi|254498126|ref|ZP_05110881.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352641|gb|EET11421.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 281 Score = 81.5 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 17/182 (9%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L + RS K + + ++D + + + Sbjct: 25 IQRGDRVMVCLSGGKDSFTLLTILEQLRR-RSGNKFELFSFTLD---QAQPGWDDSALRQ 80 Query: 76 VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 I H +++ + R +I +A+ I H Sbjct: 81 WLEDRSIKHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGYNKIALGHHR 140 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187 DD + T+ M + + M +L D I RP + +DI +F + Sbjct: 141 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLSYVQEKDIIAFANAQAFP 195 Query: 188 WC 189 Sbjct: 196 II 197 >gi|218295238|ref|ZP_03496074.1| PP-loop domain protein [Thermus aquaticus Y51MC23] gi|218244441|gb|EED10966.1| PP-loop domain protein [Thermus aquaticus Y51MC23] Length = 321 Score = 81.5 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 23/204 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ E R L +LVAVSGG DS+ L LH + + ++ Sbjct: 30 FVKETERAIRRHRMLHPGERVLVAVSGGKDSLALWDVLHRLGYEAVGLHLEL-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AREA--------RYALI 110 + ++ + + VV K + A R A RY +I Sbjct: 83 IGAYSRRSLEVTQAFAKERGLPLLVVDLKEAYGFGVPELAELSGRVACSACGLSKRY-II 141 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169 ++ A ++ T H DD+ ++ + L + L +PF Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEDALVRQGPVLPEKPGLAARVKPF 198 Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193 R ++ S+ L R I + + Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222 >gi|120612867|ref|YP_972545.1| PP-loop domain-containing protein [Acidovorax citrulli AAC00-1] gi|205830359|sp|A1TUY3|TTCA_ACIAC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120591331|gb|ABM34771.1| tRNA s(2)C-32 sulfurtransferase [Acidovorax citrulli AAC00-1] Length = 310 Score = 81.5 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 17/189 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L + R+ A+++D ++ + Sbjct: 45 RMIEEGDKVMVCMSGGKDSYTLLDILIKLQK-RAPIHFDLVAVNLD---QKQPGFPEHIL 100 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + + + + R ++ A + T I H Sbjct: 101 PEYLAATGVPFHIENQDTYSIVKRVVPEGKTTCGLCSRLRRGILYRVADELGCTKIALGH 160 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD L+T+ + K M + D + RP +D + QR Sbjct: 161 HRDDILQTLLLNMFFGGKMKAM----PPKLVSDDGRHVVIRPLAYVPEKDTTRWAQQRQF 216 Query: 187 SWCEDPSNT 195 P N Sbjct: 217 PII--PCNL 223 >gi|71065332|ref|YP_264059.1| hypothetical protein Psyc_0772 [Psychrobacter arcticus 273-4] gi|123649139|sp|Q4FTN3|TTCA_PSYA2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|71038317|gb|AAZ18625.1| conserved hypothetical protein [Psychrobacter arcticus 273-4] Length = 381 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 23/263 (8%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F +++ ++ V VSGG DS L +L + I F ++V+ + Sbjct: 83 AIRDF--NMIEDGDVVMVCVSGGKDS---YTLLDILLLLKRIAPIHFDIVAVNLDQKQPG 137 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + IAH ++ +A R + AK I Sbjct: 138 YPEEVLPA--YLNEQGIAHYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 195 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L T ++ A K S + D + RP +DI Sbjct: 196 ATKIALGHHRDDMLATFFLNLFHGGALK----SMPPKLLSDDKQNMLIRPLAYVEEKDII 251 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + + P N R + D+ ++ + + N + Sbjct: 252 EYARLKEFPII--PCNLCGSQT-NLQRAIINDMLREWDDAHPQRLASIFKAMQNVAPSQL 308 Query: 239 PKYLTVHMRSIIAISQDILNIDS 261 ++ D + Sbjct: 309 ADRELFDFETLSLERDDNERLFE 331 >gi|219130024|ref|XP_002185175.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403354|gb|EEC43307.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 220 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 42/196 (21%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---------------- 59 L +L+ +SGG DS+ LL L K + ++D Sbjct: 28 LEEGDRLLLGLSGGKDSLSLLHCLLEFQKKLPI-KFEIEVCTIDPMTPSFDPSPLIPYIN 86 Query: 60 ------HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH 113 H ++ + S K+ K + L A + + Sbjct: 87 TLGLKYH---------------FIKDNIVSRASSSGKDGKVVSSLCAYCARMKRGNLYAC 131 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ N ++ A DD E+ M + + + + + + + RP CR Sbjct: 132 ARRNNCNKLVLAQHLDDCAESFMMSVMHNGFLR----TMKANYQINAGGISVIRPLAYCR 187 Query: 174 REDIRSFLLQRNISWC 189 + F N+ Sbjct: 188 ESLMTEFARSANLPVI 203 >gi|329123502|ref|ZP_08252066.1| PP-loop family protein [Haemophilus aegyptius ATCC 11116] gi|327471084|gb|EGF16539.1| PP-loop family protein [Haemophilus aegyptius ATCC 11116] Length = 313 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 42 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 97 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAITKEFPII- 211 Query: 191 DPSNT 195 P N Sbjct: 212 -PCNL 215 >gi|319776349|ref|YP_004138837.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae F3047] gi|317450940|emb|CBY87166.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus influenzae F3047] Length = 276 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ K A+++D + +V + Sbjct: 5 GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 60 ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 L T+++ K S I D + RP C+ +DI + + + Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAITKEFPII- 174 Query: 191 DPSNT 195 P N Sbjct: 175 -PCNL 178 >gi|297587563|ref|ZP_06946207.1| PP-loop family protein [Finegoldia magna ATCC 53516] gi|297574252|gb|EFH92972.1| PP-loop family protein [Finegoldia magna ATCC 53516] Length = 275 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I V +SGG DS+ L + + ++F A +++ +R + Sbjct: 37 GDKIAVCMSGGKDSLLLAKLFQELQKHGMNNFDLEFIA-----MNPGYSEENIRLEKENF 91 Query: 78 SRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 +L I + V S R + AK + + H FDD + Sbjct: 92 EKLNIPYHMYDTDVFSVSEKISSNNPCYMCARMRRGALYSKAKELGCNKMALGHHFDDVI 151 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 ET+ + K M + ++ + + RP R E ++S+L + Sbjct: 152 ETILLNVLCSGNYKTM--MPKLHSNNFE-GIELIRPMYLIREESVKSWLNYSGLK 203 >gi|222086149|ref|YP_002544681.1| hypothetical protein Arad_2599 [Agrobacterium radiobacter K84] gi|221723597|gb|ACM26753.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 290 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 81/236 (34%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR + + L LV VSGG DS GLL L + R ++ A ++D Sbjct: 41 RLLRQVRQALDDFQMLKGQKRWLVGVSGGKDSYGLLSILLDL-KWRGLLPVELIACNLDQ 99 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V + +++ + H + + + + R + Sbjct: 100 G-QPN---FPKHVLPEYLTKIGVEHRIEYRDTYSIVKEKVPAGATYCSLCSRLRRGNLYR 155 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 156 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 211 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F D + D +R ++ + DI+ K + L Sbjct: 212 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLGDIERRMPGRKDTMLRALA 267 >gi|88703490|ref|ZP_01101206.1| conserved hypothetical protein [Congregibacter litoralis KT71] gi|88702204|gb|EAQ99307.1| conserved hypothetical protein [Congregibacter litoralis KT71] Length = 285 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 20/204 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 I+V +SGG DS +L L ++ + A+ +D ++ + + Sbjct: 38 RIMVCLSGGKDSYAMLDILQNLQRSAPVS-FELIAVHMD---QKQPGYPPEILPAYLDKQ 93 Query: 81 RIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I + ++ + R + A++I A+ I H DD +E Sbjct: 94 NIEYHILEKDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAESIGASRIALGHHRDDIVE 153 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+++ K M + D D + RP C+ D+ + + P Sbjct: 154 TLFLNMFFGGTLKAMPPKLLSD----DGKNVVIRPMAYCKEADLARYAEEMQFPII--PC 207 Query: 194 NT---DDRFERVRVRRFVRDIDLH 214 N D +R +++ + D + Sbjct: 208 NLCGSQDNLQRQAIKKMLVDWERQ 231 >gi|293392314|ref|ZP_06636648.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952848|gb|EFE02967.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 321 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS LL L ++ + K + A+++D + ++ + Sbjct: 50 GDKVMVCLSGGKDSYTLLDILLNLQQNAPI-KFRIVAVNLD-QKQPG---FPEHILPEYL 104 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 105 KGIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 164 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 L T+++ G L M ++ D I RP C+ +DI + + + Sbjct: 165 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPII 219 Query: 190 EDPSNT 195 P N Sbjct: 220 --PCNL 223 >gi|322804614|emb|CBZ02166.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum H04402 065] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C+ L I + + + R + Sbjct: 96 HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--QGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|260460838|ref|ZP_05809088.1| PP-loop domain protein [Mesorhizobium opportunistum WSM2075] gi|259033415|gb|EEW34676.1| PP-loop domain protein [Mesorhizobium opportunistum WSM2075] Length = 291 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 20/192 (10%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++ F S+V P LVA+SGG DS GLL L + R ++ A ++D + Sbjct: 44 QAIEDF--SMVRPGERWLVALSGGKDSYGLLAVLLDL-KWRGLLQVDLLACNLDQG-QPN 99 Query: 66 AKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 +++ D + IAH + V + + R + A+ Sbjct: 100 ---FPKHILPDYLNANGIAHRIEYQDTYSVVTDKLPQGSTYCSLCSRLRRGHLYRIAREE 156 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + ++ H +D LET +M G + + D ++ + RP C D+ Sbjct: 157 GCSALVLGHHREDILETFFMNLFHG----GRLAAMPPKLLNDDGDVMVLRPLSYCAEIDL 212 Query: 178 RSFLLQRNISWC 189 F Sbjct: 213 EKFAAAMRFPII 224 >gi|182418364|ref|ZP_02949659.1| PP-loop family protein [Clostridium butyricum 5521] gi|237666423|ref|ZP_04526408.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377746|gb|EDT75290.1| PP-loop family protein [Clostridium butyricum 5521] gi|237657622|gb|EEP55177.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ + +L+ I V +SGG DSM + L + K +++D Sbjct: 39 KFVKAVKEY--NLIEEGDKIAVGISGGKDSMLMAKLLQELQR-HGQVKFDLVFLAMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEH 113 + + C L I + + + R + Sbjct: 96 HPE-------IKKLLIENCEHLDIPIHIYDSGIFEVVDRMAKDYPCYLCARMRRGSLYAK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172 A+ + H ++D +ET + G + M + NL + RP Sbjct: 149 AQEFGCNKLALGHHYNDVIETTMLNIL----YAGNFKTMMPKLKAKNFANLELIRPMYYI 204 Query: 173 RREDIRSFLLQRNI 186 + I+ F+ I Sbjct: 205 EEDYIKKFINNAGI 218 >gi|170754940|ref|YP_001779993.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] gi|169120152|gb|ACA43988.1| PP-loop family protein [Clostridium botulinum B1 str. Okra] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C L I + + + R + Sbjct: 96 HED-------IRKLLIDNCDYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|153938765|ref|YP_001389708.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|152934661|gb|ABS40159.1| PP-loop family protein [Clostridium botulinum F str. Langeland] gi|295317796|gb|ADF98173.1| PP-loop family protein [Clostridium botulinum F str. 230613] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C L I + + + R + Sbjct: 96 HED-------IRKLLIDNCDYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|148378344|ref|YP_001252885.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502] gi|168184830|ref|ZP_02619494.1| PP-loop family protein [Clostridium botulinum Bf] gi|226947572|ref|YP_002802663.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] gi|237793661|ref|YP_002861213.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] gi|148287828|emb|CAL81894.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|182672085|gb|EDT84046.1| PP-loop family protein [Clostridium botulinum Bf] gi|226843802|gb|ACO86468.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto] gi|229260770|gb|ACQ51803.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C L I + + + R + Sbjct: 96 HED-------IRKLLIDNCDYLNIPINLFDSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|119383626|ref|YP_914682.1| PP-loop domain-containing protein [Paracoccus denitrificans PD1222] gi|205830607|sp|A1B0E2|TTCA_PARDP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|119373393|gb|ABL68986.1| PP-loop domain protein [Paracoccus denitrificans PD1222] Length = 297 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 15/179 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL LH + R ++ A ++D + + + Sbjct: 52 PGDRWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 107 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ ++ H + + + + R + A+ ++ H DD Sbjct: 108 TQRQVPHRIEYQDTYSIVKEKVPEGRTYCSLCSRLRRGNLYRIAREEGCQAVVLGHHRDD 167 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 LET +M G S + + +L + RP D F N Sbjct: 168 ILETFFMNLFHG----GRLASMPPKLLNEEGDLNVLRPLAFVAEADCDRFARAMNYPVI 222 >gi|169824156|ref|YP_001691767.1| PP family ATPase [Finegoldia magna ATCC 29328] gi|302380842|ref|ZP_07269305.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3] gi|303234889|ref|ZP_07321514.1| PP-loop family protein [Finegoldia magna BVS033A4] gi|167830961|dbj|BAG07877.1| ATPases of the PP superfamily [Finegoldia magna ATCC 29328] gi|302311337|gb|EFK93355.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3] gi|302494007|gb|EFL53788.1| PP-loop family protein [Finegoldia magna BVS033A4] Length = 275 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 12/174 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I V +SGG DS+ LL L L I+++ E + + Sbjct: 37 GDKIAVCMSGGKDSL-LLAKLFQELQKHGMNNFDLEFIAMNPGYSEENTRLEK--ENF-E 92 Query: 79 RLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +L I + V S R + AK + + H FDD +E Sbjct: 93 KLNIPYHMYDTDVFSVSEKISSNNPCYMCARMRRGALYSKAKELGCNKMALGHHFDDVIE 152 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 T+ + K M + ++ + + RP R E ++S+L + Sbjct: 153 TILLNVLCSGNYKTM--MPKLHSNNFE-GIELIRPMYLIREESVKSWLNYSGLK 203 >gi|56695448|ref|YP_165796.1| C32 tRNA thiolase [Ruegeria pomeroyi DSS-3] gi|81350680|sp|Q5LW09|TTCA_SILPO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56677185|gb|AAV93851.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 294 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 15/179 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R+ LV +SGG DS LL L+ + R + A ++D + Sbjct: 45 RADGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLDQGQPGFPSTVLP-- 101 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + R+ + + + V A R + A+ + ++ H Sbjct: 102 -EFLDRMGVPNRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 160 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD LET +M G + + + +L++ RP D F N Sbjct: 161 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMN 215 >gi|260439428|ref|ZP_05793244.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876] gi|292808116|gb|EFF67321.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876] Length = 400 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 28/239 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ IE + + I V +SGG DSM L L + D I ++ Sbjct: 154 FVEAIEKYKL----IKDGDRIAVCISGGKDSMLLARMLK-MAKDYRLYDFSPEYIMMNPG 208 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEH 113 E ++ + + + V + R + Sbjct: 209 YMERDMKQMEF-------NNLLFDIPVSYFNTNVFDDVDEIGKNPCFFCSRMRRGHLYRK 261 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK + I H +DD +ET M + M D I ++ + RP R Sbjct: 262 AKELGCNKIALGHHYDDVIETTLMSMLYGAQARTMLPVIKSDNI---EDMKLIRPMYLIR 318 Query: 174 REDIRSFLLQRNISWCEDPS--NTDD---RFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +DI + + N+++ + NT D R+R+++ +RD+ + F + Sbjct: 319 EDDINLWKNRNNLNFVKCACRLNTKDGGEDTIRLRIKKLIRDLTNENPAVPANIFGSMS 377 >gi|158335112|ref|YP_001516284.1| C32 tRNA thiolase [Acaryochloris marina MBIC11017] gi|205830358|sp|B0CEK4|TTCA_ACAM1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|158305353|gb|ABW26970.1| conserved hypothetical protein, possible PP loop protein [Acaryochloris marina MBIC11017] Length = 283 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 15/179 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 I+V +SGG DS LL L + + A+++D + ++V + Sbjct: 40 AGDRIMVCLSGGKDSYTLLDILLHLQRAAPI-DFEILAVNLD-QKQPNFPEQVLP--NYL 95 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L++ + +V + R ++ A+ AT I H +D Sbjct: 96 NQLQVPYRIVEEDTYSTVKRVIPEGKTMCGLCSRLRRGILYRVAQEEQATKIALGHHRED 155 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ + M + D + + RP C DI+ + R Sbjct: 156 IIETLFLNLFHAGKLEAMPPKLLSDNRQH----MVIRPLAYCPEADIQRYADLRQFPII 210 >gi|163785862|ref|ZP_02180328.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1] gi|159878868|gb|EDP72906.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1] Length = 229 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 24/200 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + R IL+AVSGG DS+ L AL + + I Sbjct: 42 FEKRVAKTIKEFRMFSPKDRILIAVSGGKDSLALWNALVKLGYEADGFYIDL-------G 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALIS 111 + E ++D R ++ +VS K + A RY ++ Sbjct: 95 IDEYSQDSKRLALQFAEKIERPLHIVSLKEEIAPIPQIDQITNRPACSACGTVKRY-YMN 153 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPF 169 ++AK + +I T H DD++ V + + + +L + N +I +P Sbjct: 154 KYAKELGYNIIATGHNLDDEV-AVLFGNTLHWDIDYL---KRQYPVLREENGFIRKVKPL 209 Query: 170 LRCRREDIRSFLLQRNISWC 189 + ++ + NI + Sbjct: 210 CKITEKEAALYAFFNNIEYI 229 >gi|170760980|ref|YP_001785678.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407969|gb|ACA56380.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree] Length = 288 Score = 81.1 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDRIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C+ L I + + + R + Sbjct: 96 HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|326318898|ref|YP_004236570.1| PP-loop domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375734|gb|ADX48003.1| PP-loop domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 310 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 19/190 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L + R+ A+++D ++ + Sbjct: 45 RMIEEGDKVMVCMSGGKDSYTLLDILIKL-KKRAPIHFDLVAVNLD---QKQPGFPEHIL 100 Query: 74 SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + + + + + + R ++ A + T I H Sbjct: 101 PEYLATTGVPFHIENQDTYSIVKRVVPEGKTTCGLCSRLRRGILYRVADELGCTKIALGH 160 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185 DD L+T+ + G L M ++ D + RP +D + Q+ Sbjct: 161 HRDDILQTLLLNMF-----FGGKLKAMPPKLVSDDGRHVVIRPLAYVTEKDTTRWAQQQQ 215 Query: 186 ISWCEDPSNT 195 P N Sbjct: 216 FPII--PCNL 223 >gi|225158870|ref|ZP_03725185.1| tRNA(Ile)-lysidine synthetase [Opitutaceae bacterium TAV2] gi|224802562|gb|EEG20819.1| tRNA(Ile)-lysidine synthetase [Opitutaceae bacterium TAV2] Length = 250 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 21/220 (9%) Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS------------GMCD 155 A + + H DD ET++MR R G+ Sbjct: 2 AFFAGQLSRRRIRCLFLGHQLDDIAETLFMRVARGSGTAGLAAPRPVHHLDNVGVGSGGG 61 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 RP L + I L +W ED SN + F R R+R V L A Sbjct: 62 GGAAGRGRVHLRPLLTLSKARIVDSLAAAGATWREDASNAEGDFFRNRIRLDVLPRWLEA 121 Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD------ILNIDSTLLFYLLR 269 ++ + + + +++ L + + ++R Sbjct: 122 ASGRVPSQARDALAGAALTRAQLEEDADALDEWAGRVARTDADGRLPLTQLAGVPRAVVR 181 Query: 270 VSAAICGGQISLP---GYRSMERVMLFLKSGKRGCVSIGR 306 + G + + + + ++ L + S+G Sbjct: 182 RVLHLWLGSLPVASDLSRQGFDSLLDKLMVARSTRFSLGD 221 >gi|153931917|ref|YP_001382743.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|153935004|ref|YP_001386294.1| PP-loop family protein [Clostridium botulinum A str. Hall] gi|152927961|gb|ABS33461.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397] gi|152930918|gb|ABS36417.1| PP-loop family protein [Clostridium botulinum A str. Hall] Length = 288 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 15/189 (7%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117 E + + + D C+ L I + + + R + A+ + Sbjct: 96 HEDIR---KLLVDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSKAQEL 152 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H F+D +ET+ + L T L + RP E I Sbjct: 153 GCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIEEEYI 209 Query: 178 RSFLLQRNI 186 + F+ I Sbjct: 210 QKFIQNSGI 218 >gi|187777058|ref|ZP_02993531.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC 15579] gi|187773986|gb|EDU37788.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC 15579] Length = 288 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I++++ + +LV I VAVSGG DS+ L+ L L + IS++ Sbjct: 39 KFIKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMNPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C+ L I + + + R + Sbjct: 96 HED-------IRKLLIDNCNYLNIPINLFDSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFKSTNF--EGLELIRPLYYVE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|56460414|ref|YP_155695.1| C32 tRNA thiolase [Idiomarina loihiensis L2TR] gi|81363164|sp|Q5QZ01|TTCA_IDILO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56179424|gb|AAV82146.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR] Length = 300 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 25/250 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 HI+V +SGG DS L ++L + ++FS ++V+ L + +V Sbjct: 33 GDHIMVCLSGGKDSY---TLLDTLLYLQKVAPVRFSLVAVN--LDQKQPGFPEHVLPAYL 87 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L + + +V + R ++ AK + AT I H DD Sbjct: 88 NKLGVDYKIVEEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTAKELKATKIALGHHRDD 147 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 +ET+++ L M + D + RP R +DI + Sbjct: 148 MIETLFLNMFHGGK-----LKSMPPKLASDNGEHVVIRPLAYAREKDIEQYSAAMEFPII 202 Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVH 245 P N + +R ++++ + D F ++ V ++ + + V Sbjct: 203 --PCNLCGSQENLQRKQIKQMLNGWDKQFPGRIESLFTAMQNVVPSHLADSALFDFKAVT 260 Query: 246 MRSIIAISQD 255 + + D Sbjct: 261 ADGVADENGD 270 >gi|78358650|ref|YP_390099.1| hypothetical protein Dde_3611 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221055|gb|ABB40404.1| Protein of unknown function UPF0021 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 302 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 22/198 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E + L + +LVA+SGG DS+ L++ L + + + I + Sbjct: 30 FTRQVEKGIRRQKLLTFEDRVLVALSGGKDSLALMLVLSKLGYNVTGLHIDLAI------ 83 Query: 62 LRETAKDEVR-YVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALIS 111 + R V C + V + ++ + +A + + + Sbjct: 84 --PGSSPVARGVVERFCHKHGFKLIVKEMAEEGLAIPLVKARLNRPVCSACGKIKRYFFN 141 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFL 170 + A T++ T H DD++ ++ + R LS + + +P Sbjct: 142 KTALDEGYTVLATGHNLDDEIARLFSNTLR---WDIAYLSDQGPALPAEGGFARKIKPLY 198 Query: 171 RCRREDIRSFLLQRNISW 188 R + ++ + I + Sbjct: 199 RLSEFETANYSFLQGIEY 216 >gi|217969129|ref|YP_002354363.1| C32 tRNA thiolase [Thauera sp. MZ1T] gi|217506456|gb|ACK53467.1| PP-loop domain protein [Thauera sp. MZ1T] Length = 317 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 20/198 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80 ++V VSGG DS LL L ++ +R+ + A+++D + D +V + Sbjct: 53 VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIVAMNLD-QKQPGFPD---HVLPAYFESI 107 Query: 81 RIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 + + +V+ K+ P+ + R +I A I AT I H DD LE Sbjct: 108 GVEYRIVTEDTYSIVKDKIPEGKTTCSLCSRLRRGIIYRTATEIGATRIALGHHRDDMLE 167 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T+++ K M + D + RP C DI F + P Sbjct: 168 TLFLNMFFGGKIKAM----PPKLVSDDGKHVVIRPLAYCTEADIARFARTMDFPII--PC 221 Query: 194 NTDDRFERVRVRRFVRDI 211 N + R+ ++++ Sbjct: 222 NLCGS-QENAQRKLIKNM 238 >gi|260833476|ref|XP_002611683.1| hypothetical protein BRAFLDRAFT_63633 [Branchiostoma floridae] gi|229297054|gb|EEN67693.1| hypothetical protein BRAFLDRAFT_63633 [Branchiostoma floridae] Length = 1156 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 38/216 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEVRYVSDV 76 +L+ +SGG DS+ LL L I + A++VD +TA + + + Sbjct: 929 GDRVLLCLSGGKDSLSLLHTLRQYQFFAKSKNITFELGAVTVD---PQTASYDPSPLKNY 985 Query: 77 CSRLRIAHS-----VVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++L + + +++ S P T + + + I A+ ++ DD Sbjct: 986 LAKLGVPYFYEEQGIMAQAASIPVCTSICSYCSRMKRGRIYACARREGYNVLAMGQHLDD 1045 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 E + +L + RPF+ R +D+R+F Q + Sbjct: 1046 LAE-------------------------REEDLRVIRPFVYVREKDLRNFAEQAKLPII- 1079 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 P N FE + R + + L K FQ L Sbjct: 1080 -PENCPACFEAPKERHRTKQLLASQELLFPKLFQSL 1114 >gi|168177683|ref|ZP_02612347.1| PP-loop family protein [Clostridium botulinum NCTC 2916] gi|182670918|gb|EDT82892.1| PP-loop family protein [Clostridium botulinum NCTC 2916] Length = 288 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + +LV I VAVSGG DS+ L+ L L + IS+D Sbjct: 39 KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95 Query: 63 RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113 E + + C+ L I + + + R + Sbjct: 96 HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H F+D +ET+ + L T L + RP Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 E I+ F+ I Sbjct: 206 EEYIQKFIQNSGI 218 >gi|289764409|ref|ZP_06523787.1| PP family ATPase [Fusobacterium sp. D11] gi|289715964|gb|EFD79976.1| PP family ATPase [Fusobacterium sp. D11] Length = 279 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 38 RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116 A D ++ ++ + I + W+ + ++ + R ++ + + Sbjct: 95 F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 151 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H FDD +ET + G + + + I RP R +D Sbjct: 152 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 207 Query: 177 IRSFLLQRNI 186 I +F+ I Sbjct: 208 IINFMKHNEI 217 >gi|270648390|ref|ZP_06222198.1| conserved hypothetical protein [Haemophilus influenzae HK1212] gi|270317215|gb|EFA28806.1| conserved hypothetical protein [Haemophilus influenzae HK1212] Length = 76 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 L+A+SGG DS LL + + + AI + H L A ++ D+C Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCD 76 >gi|256026395|ref|ZP_05440229.1| PP family ATPase [Fusobacterium sp. D11] Length = 277 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 36 RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116 A D ++ ++ + I + W+ + ++ + R ++ + + Sbjct: 93 F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 149 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H FDD +ET + G + + + I RP R +D Sbjct: 150 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 205 Query: 177 IRSFLLQRNI 186 I +F+ I Sbjct: 206 IINFMKHNEI 215 >gi|237744628|ref|ZP_04575109.1| PP family ATPase [Fusobacterium sp. 7_1] gi|229431857|gb|EEO42069.1| PP family ATPase [Fusobacterium sp. 7_1] Length = 279 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 38 RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 94 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116 A D ++ ++ + I + W+ + ++ + R ++ + + Sbjct: 95 F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 151 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H FDD +ET + G + + + I RP R +D Sbjct: 152 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 207 Query: 177 IRSFLLQRNI 186 I +F+ I Sbjct: 208 IINFMKHNEI 217 >gi|212212518|ref|YP_002303454.1| C32 tRNA thiolase [Coxiella burnetii CbuG_Q212] gi|254789873|sp|B6J031|TTCA_COXB2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|212010928|gb|ACJ18309.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii CbuG_Q212] Length = 256 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + ++V +SGG DS LL L+S+ + K A +D + + + Sbjct: 22 RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77 Query: 74 SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 +I++ +++ + R +I +A+ + I H Sbjct: 78 RGWLDDKKISYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD ++T+ M + + S + + + RP C+ DI + +++ Sbjct: 138 HRDDLIQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQF 193 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246 P N ++ +R+ V+ + K ++ ++N + + + Sbjct: 194 PLI--PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNILRALSNIKPSQLMDHELWNF 250 Query: 247 RSI 249 R + Sbjct: 251 REL 253 >gi|281337548|gb|EFB13132.1| hypothetical protein PANDA_017848 [Ailuropoda melanoleuca] Length = 307 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 28/225 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------- 65 R L A + V SGG DS L L + + ++VD + Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRELTPRLG---VSLRLVAVDEGIGGYRDAALAAG 102 Query: 66 ----------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + S R + R + E A+ Sbjct: 103 GGRRRAGTSRSPSWPTQTSSGAGRW------TPTAGTGRSRACCTFCGVLRRRALEEGAR 156 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + AT I+T H DD ETV M R A + G+ L RP ++ Sbjct: 157 LVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSRGEGGA-LPRCRPLQLASQK 215 Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 ++ + R + + + R R ++ ++ + Sbjct: 216 EVVLYAHFRRLDYFSEECVYAPEAFRGHARHLLKLLEAARPAQQQ 260 >gi|84685373|ref|ZP_01013271.1| hypothetical protein 1099457000258_RB2654_10908 [Maritimibacter alkaliphilus HTCC2654] gi|84666530|gb|EAQ13002.1| hypothetical protein RB2654_10908 [Rhodobacterales bacterium HTCC2654] Length = 287 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 16/220 (7%) Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74 LV +SGG DS +L AL+ + R ++ A ++D + + Sbjct: 49 QAKPGQKWLVCLSGGKDSYTMLAALYEM-KWRGLLPVEILACNLD---QGQPGFPATVLP 104 Query: 75 DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + ++ H + A R + A+ ++ H Sbjct: 105 EFLEDRQVPHRIEYEDTYSIVMGKVPEGRTFCALCSRLRRGNLYRIAREEGCNAVVLGHH 164 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD LET +M G + + + +L++ RP D F Sbjct: 165 RDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFSRDMGYP 220 Query: 188 WC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226 D + D +R +V++ + + ++ + F+ L Sbjct: 221 IIPCDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMFRAL 260 >gi|256829264|ref|YP_003157992.1| PP-loop domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578440|gb|ACU89576.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 80.7 bits (198), Expect = 4e-13, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 26/184 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + IL+A+SGG DS+ L L + + +D + E++ Y C Sbjct: 46 FDDRILIAISGGKDSLALAWQLKDL-------GYNIEGLHIDLGIPESSPIARSYAERFC 98 Query: 78 ------------SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125 ++L +A V + +P + RY L ++ A+ T++ T Sbjct: 99 AMGEIPLHVIETAKLGLAMCDVKRRVKRPICSVCGQ--TKRY-LFNKFAQENGFTVLATG 155 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQR 184 H DD+ ++ R LS + + +P R + + Sbjct: 156 HNLDDETSRLFANVMR---WDVEFLSDQGPVMPAEKGFAKKVKPLFRLTEFETANLCFLA 212 Query: 185 NISW 188 I + Sbjct: 213 GIDY 216 >gi|308799667|ref|XP_003074614.1| unnamed protein product [Ostreococcus tauri] gi|116000785|emb|CAL50465.1| unnamed protein product [Ostreococcus tauri] Length = 1183 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 40/245 (16%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E+++ F + +L+ +SGG DS+ +L L S+ G + +VD Sbjct: 856 EAIQDF-EMIQPGDRVLLGLSGGKDSLAMLHILMSIKQRLPPGTFTLACATVDPGT---- 910 Query: 67 KDEVRY----VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKT 116 + + L I + + + + A + + + Sbjct: 911 ---EAFNPRPLIPYVESLGIEYHYLEEEIMAMAEAHMNGDSICAFCARMKRGALYSCCRK 967 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRC--- 172 ++ A DD +E+ M + + M S + D + + WI+ C Sbjct: 968 YGYNKLVLAQHLDDCVESFLMSTMYNGRNPTMKASYLIDEAISSRTSGWINENCPACFEA 1027 Query: 173 --RREDIRSF-------------LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 R I+ ++ ++ DPS D +R + + + Sbjct: 1028 PKERNHIKKLLAREESVFPSLYSCMKNALTPLFDPSAQDLL---SMIREAIEARNANKQR 1084 Query: 218 LKMKK 222 K ++ Sbjct: 1085 AKSQR 1089 >gi|297619559|ref|YP_003707664.1| PP-loop domain-containing protein [Methanococcus voltae A3] gi|297378536|gb|ADI36691.1| PP-loop domain protein [Methanococcus voltae A3] Length = 318 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I V +SGG DS+ + L+ + K I V+ + D + C + Sbjct: 59 IAVGISGGKDSLVMAYVLNEFF--KQIPNSKIIGIMVNEGIEGFRNDGIEKGIKFCEKFG 116 Query: 82 IAHSVVSW---------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 I + + ++ K + R +++ A + H Sbjct: 117 IEYHIATFSEYIGANLDEIVNIAKEKNMTMNPCSFCGVIRRKILNRVAIEKKCDYLAIGH 176 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 DD + V M +K L+ + + D + +P + +++ F + Sbjct: 177 NLDDISQAVMMNYIEGDIKK---LAILGKSSNSDKFVKRIKPLSKIPENEVKLFADILKM 233 Query: 187 SW 188 + Sbjct: 234 DY 235 >gi|255527644|ref|ZP_05394504.1| TilS [Clostridium carboxidivorans P7] gi|255508657|gb|EET85037.1| TilS [Clostridium carboxidivorans P7] Length = 327 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 75/201 (37%), Gaps = 16/201 (7%) Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R G GL G+ N++ RP + R +I + + NI+ D +N + Sbjct: 1 MRIMR-----GTGLEGLVGIKAVRDNIF-VRPLIDVTRHEIEEYCCKENINPRIDKTNLE 54 Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSI 249 + R +VR + + + + D N + + + + Sbjct: 55 TIYSRNKVRLELIPYIQENFNKDIIKVLNRLSDTIKIDNEYLETVAKEKFKKYCDIQGEK 114 Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRV 307 + IS++ + ++ ++R + G ++ + ++ +GK + V Sbjct: 115 VIISKEAFLENEAIITRIIRKALYEVTGNLNNFEKIHIYDIINIQSRSTGKNIDLPNHVV 174 Query: 308 VIDRRANFLWITRAVRNLPTL 328 V ++ + ++I + V+ + Sbjct: 175 VSNKYGD-IYILKKVKENKEV 194 >gi|209876207|ref|XP_002139546.1| PP-loop family protein [Cryptosporidium muris RN66] gi|209555152|gb|EEA05197.1| PP-loop family protein [Cryptosporidium muris RN66] Length = 1229 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 90/237 (37%), Gaps = 24/237 (10%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETA 66 +++ F + ILV VSGG DS+ + +L R K +A +VD Sbjct: 987 AIKTF-NMIKQGDRILVGVSGGKDSLT--MLHTLLLLQRIAPVKFSIAAATVD----PQT 1039 Query: 67 KD-EVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKT 116 K+ +V + + L I + +S+ K + + + + ++ K Sbjct: 1040 KEMDVTSLKPYMNSLGIEYHFLSYPIVQLASKLKYKQQKLSYCSFCARMKRGILYSCMKK 1099 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + ++ DD E+ + + + + ++ N+ + RP + CR +D Sbjct: 1100 YDYNVLALGQHTDDICESFLLSIIHNGKLN----TMKANYLVPKYNIRVIRPMIYCREKD 1155 Query: 177 IRSFLLQRNISWCE--DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231 + F L+ + P+ ER ++++ + ++ + + L+ ++ Sbjct: 1156 LEKFALRWKLPVITENCPACFSQAKERRKIKQLLSQEEIDHPNVHSSIIKALQPLIS 1212 >gi|251780998|ref|ZP_04823918.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085313|gb|EES51203.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 288 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++++ + + I VA+SGG DS+ L+ L L + I++D Sbjct: 39 KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96 Query: 64 ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114 ++ + C L I ++ + + R + A Sbjct: 97 P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H ++D +ET + K M L + NL + RP Sbjct: 150 QELGCNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206 Query: 175 EDIRSFLLQRNISW 188 E I+ F+ I+ Sbjct: 207 EYIKKFIKSTGITP 220 >gi|118431097|ref|NP_147309.2| hypothetical protein APE_0537.1 [Aeropyrum pernix K1] gi|116062423|dbj|BAA79504.2| conserved hypothetical protein [Aeropyrum pernix K1] Length = 338 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 26/228 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80 +L+ +SGG DS LL AL ++ G + A+S+ + ++ ++ + V + Sbjct: 54 VLLGLSGGKDSYVLLDALSEIV-----GPSRLVAVSIVEGIPGYNREGDIEKIRRVAAAR 108 Query: 81 RIAHSVVSWKNSKPQTGLMAAAREA---------------RYALISEHAKTINATLIMTA 125 + V S + + +R R +++ +A+ A + TA Sbjct: 109 GVDVIVTSIREYVGASLYEIYSRARGRGAGHAACTYCGISRRRILALYARLYGAHKVATA 168 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD+ +T + R + + + DL I +P + + S+++ Sbjct: 169 HNLDDEAQTAIVNFLRGDWVGMLKTHPLYRSGGEDLVPRI-KPLRKVYEWETASYVVLHR 227 Query: 186 ISWCEDPS---NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 E N + R RVR +R ++ + ++ + L ++ Sbjct: 228 YPIQEAECPFINMNPT-LRARVRTALRVLEERSPGTLLRMMERLDEEL 274 >gi|168334209|ref|ZP_02692412.1| PP-loop domain protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 275 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 19/225 (8%) Query: 15 SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 L+ I V +SGG DS L + +L + + +D + + Sbjct: 35 QLIKDGDKIAVCISGGKDSFVLAKCMQELLR-HGRNNFELVFLVMD---PGYSNQNRELI 90 Query: 74 SDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + + I + + + R + + A+ + I H FD Sbjct: 91 IENAKLMGIPIQMFESPIFTVVADVGGNPCYLCARMRRGYLYKEAQQLGCNKIALGHHFD 150 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET M K M ++ + + + RP + +DI +F + + Sbjct: 151 DVIETTLMNMLYSGEIKTM--MPKLKSLNFKP-MELIRPLYMVKEKDILAFKDYNKLMFL 207 Query: 190 EDPS-------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + N + +R +++ +++ ++ FQ + Sbjct: 208 QCACLMTEKIANDNVDSKRQEMKKLIQNFRKINPHIDRNIFQSMH 252 >gi|225850787|ref|YP_002731021.1| PP-loop domain protein [Persephonella marina EX-H1] gi|225644978|gb|ACO03164.1| PP-loop domain protein [Persephonella marina EX-H1] Length = 315 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 22/207 (10%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E R ILVAVSGG DS+ L L + + I +D Sbjct: 42 FEKRVEKTIKEFRMFSKKDRILVAVSGGKDSLTLWNVLTKLGYEADGFYIDLG---ID-Q 97 Query: 62 LRETAKD-EVRYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISE 112 E +K+ +R+ + L I V+ +KP A RY ++ Sbjct: 98 YSEDSKNLSLRFSERIGRPLHIISLKDEIAPIPVIDKSTNKPACSACGTA--KRY-YMNR 154 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170 +AK + +I T H DD++ V + + K + +L + +I +P Sbjct: 155 YAKQLGYNIIATGHNLDDEV-AVLFGNTLHWDIKYL---KKQYPVLREEGGFIRKVKPLC 210 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDD 197 + ++ + +I + E + Sbjct: 211 KITEKESAMYAFFNDIEYIEYECPFSE 237 >gi|302344685|ref|YP_003809214.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075] gi|301641298|gb|ADK86620.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075] Length = 324 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 24/187 (12%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYV 73 L +LVAVSGG DS+ L + ++ + V CL E ++ ++ Sbjct: 49 LRPGQEVLVAVSGGKDSLAL---------WLTLEELGYRTAGVHLCLEMGEFSEASLQSC 99 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLI 122 + +RL S + R ++ + + Sbjct: 100 RQMAARLGRPLHEASLGQLTDGLSMQEIVWATRRQFCSVCGTFKRHFLNRLCLELGFDTV 159 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSF 180 T H DD+ + ++ + + + ++ +P R +IR+F Sbjct: 160 ATGHHLDDEAGRLLGNLIHNHLDYLQAMWPVLESGGDAATGFARKVKPLCRLEGAEIRAF 219 Query: 181 LLQRNIS 187 + Sbjct: 220 AQVHELP 226 >gi|188588612|ref|YP_001920117.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43] gi|188498893|gb|ACD52029.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43] Length = 288 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++++ + + I VA+SGG DS+ L+ L L + I++D Sbjct: 39 KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96 Query: 64 ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114 ++ + C L I ++ + + R + A Sbjct: 97 P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H ++D +ET + K M L + NL + RP Sbjct: 150 QELGCNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206 Query: 175 EDIRSFLLQRNISW 188 E I+ F+ I+ Sbjct: 207 EYIKKFIKSTGIAP 220 >gi|306820973|ref|ZP_07454593.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551087|gb|EFM39058.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 285 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 24/179 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVD---HC-LRETAKDEVRY 72 I VA+SGG DSM + + + G + F A + +D H +R + Sbjct: 52 GDRIAVAISGGKDSMLMAKLFQEL---KEHGNVNFDAEFVVMDPGYHKDIR-------KL 101 Query: 73 VSDVCSRLRIAHSVVSWKN---SKPQTG--LMAAAREARYALISEHAKTINATLIMTAHT 127 + + C L I + + G + R + A+ + + H Sbjct: 102 LEENCKYLEIPIKIFDTDVFAIADKIAGDYPCYMCAKMRRGALYNIAEQLKCNKLALGHH 161 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 F+D +ET + L + ++ + RP + I + + Sbjct: 162 FNDVIETTMLNVL-YAGSYKTMLPKLKSKNF--DSIELIRPLFLIEEKSIIKYTQNAGL 217 >gi|319945211|ref|ZP_08019473.1| PP-loop family protein [Lautropia mirabilis ATCC 51599] gi|319741781|gb|EFV94206.1| PP-loop family protein [Lautropia mirabilis ATCC 51599] Length = 379 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 19/186 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 ++V +SGG DS +L L + R+ A+++D + +V + Sbjct: 144 PNDRVMVCLSGGKDSFAMLDILLGLQK-RAPVPFSIVAVNLD-QRQPGFPADVLP--NYL 199 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +L + + + + + R ++ A + AT I H DD Sbjct: 200 QKLGVEYHIETEDTYSTVQRVIPDGKTKCSLCSRLRRGILYRVASELGATRIALGHHRDD 259 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L T ++ G L M ++ D + RP +D+ + +N Sbjct: 260 ILATFFLNLF-----YGGQLKTMPAKLVSDDGRHVVIRPLAYVEEKDLIRWAEVKNFPII 314 Query: 190 EDPSNT 195 P N Sbjct: 315 --PCNL 318 >gi|227500613|ref|ZP_03930662.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098] gi|227217200|gb|EEI82544.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098] Length = 269 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 25/242 (10%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCL 62 I++++ F SL+ + VA+SGG DS+ L + + K+KF + D Sbjct: 23 IKAIKEF--SLINEGDKVAVAISGGKDSLILAKLIEEL---HKHSKVKFDVAYISMD--- 74 Query: 63 RETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAK 115 E + + L I ++ + + + A R + AK Sbjct: 75 -PGYDKENRELLEENIKYLNIDATIYDSEVFEVAETITKGAYPCYMCARMRRGFLYNKAK 133 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H +D +ET M K M + + RP + Sbjct: 134 ELGCNKLALGHHMNDAIETTMMNVLYAGNFKTMKPKLRAQNF---EGMELIRPLYYLHED 190 Query: 176 DIRSFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 DI+ + + + + + + R +++ + D+ ++ + + Sbjct: 191 DIKRWRDYVGLKALNCACTVTKSSESYTRKKIKELIADLKKDNPEVEKSILRSAENVNCD 250 Query: 233 AV 234 V Sbjct: 251 MV 252 >gi|167534104|ref|XP_001748730.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772692|gb|EDQ86340.1| predicted protein [Monosiga brevicollis MX1] Length = 1003 Score = 80.3 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 16/186 (8%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVDHCLR 63 ++++R F L +LV VSGG DS+ L+ + + I+ A +VD Sbjct: 749 LKAIRDF-DMLRDGDRVLVCVSGGKDSLSLVHVMKQLQYKLRGDGINIQLGAATVD---P 804 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKTI 117 T + + +L + + + A + + A+ Sbjct: 805 GTEAFDPSPLQAYFQQLGMPYFYEEQCIMDDAMNIENLASICSFCARMKRGRLYACARRE 864 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 ++M DD E++ M + + + ++ + +L ++RPF+ R +D+ Sbjct: 865 GYNVLMFGQHLDDMAESLMMSLFHNGYLR----TMKAHYVVAEGDLRMARPFVYVREKDL 920 Query: 178 RSFLLQ 183 R F Sbjct: 921 RMFAEH 926 >gi|332297415|ref|YP_004439337.1| PP-loop domain protein [Treponema brennaborense DSM 12168] gi|332180518|gb|AEE16206.1| PP-loop domain protein [Treponema brennaborense DSM 12168] Length = 235 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 24/192 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ F R + IL+ SGG DS L+ + + + F+A+ V Sbjct: 8 RIIDKAVFEYRMIEDGDRILIGASGGKDSTALVEYFAA-RKKQGRDRFDFTALHV----- 61 Query: 64 ETAKDEV----RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMA---AAREARYALISEHAK 115 + + R + ++ ++ + V+ + + G R ++ +A Sbjct: 62 --STEIAPAFDRRLLELFAQWNVFPETVNVGVLERLKPGRRMNCWWCSTQRRTELNAYAI 119 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDL-NLWISRPFLRCR 173 I H DD LET+ M + G G LS M + Y+ + + RP Sbjct: 120 AHGYNKIALGHHMDDILETLLMNAL------GKGELSTMPPRLQYEKYPVTVVRPLCFSD 173 Query: 174 REDIRSFLLQRN 185 + I + +R Sbjct: 174 VDTIVAHAAERG 185 >gi|332306563|ref|YP_004434414.1| PP-loop domain protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173892|gb|AEE23146.1| PP-loop domain protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 311 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + A+++D + +V + Sbjct: 49 GDKVMVCLSGGKDSYTMLDMLLHMQKSAPI-HFSIIAVNLD-QKQPG---FPEHVLPNYL 103 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + ++++ + R ++ +A + T I H DD Sbjct: 104 ENLGVDYAIIEEDTYSIVVDKVPEGKTTCSLCSRLRRGILYTNAIKMGVTKIALGHHRDD 163 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K S D + RP C +DI + + Sbjct: 164 MLETLFLNMFHTGRLK----SMPPKLTSDDGKNVVIRPLAYCSEQDIADYSIHMGFPII- 218 Query: 191 DPSNT 195 P N Sbjct: 219 -PCNL 222 >gi|260494489|ref|ZP_05814619.1| PP family ATPase [Fusobacterium sp. 3_1_33] gi|260197651|gb|EEW95168.1| PP family ATPase [Fusobacterium sp. 3_1_33] Length = 277 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 36 RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116 A D ++ ++ + I + W+ + ++ + R ++ + + Sbjct: 93 F--EAIDVYKFKENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 149 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H FDD +ET + G + + + I RP R +D Sbjct: 150 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 205 Query: 177 IRSFLLQRNI 186 I +F+ I Sbjct: 206 IINFMKHNEI 215 >gi|269123504|ref|YP_003306081.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314830|gb|ACZ01204.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112] Length = 286 Score = 80.0 bits (196), Expect = 6e-13, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 I VA+SGG DS+ LL L L S K + I+++ + D ++ ++ Sbjct: 53 DKIAVAISGGKDSL-LLAKLFQELKRASKTKFELVFIAMNPGFNQRNLDNLKL--NL-EH 108 Query: 80 LRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134 L I + + + R + A + + H DD +ET Sbjct: 109 LNIPCHIYDDNIFDIAGKIAKDYPCYMCAKMRRGSLYSKATELGCNKLALGHHLDDVVET 168 Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 M G + + + ++ + RP ++I F+ I Sbjct: 169 TLMSMF----YMGKFETMLPKLKSDNFDIELIRPLFYIEEKNIIKFVKNNGI 216 >gi|294785550|ref|ZP_06750838.1| ATPase of the PP family protein [Fusobacterium sp. 3_1_27] gi|294487264|gb|EFG34626.1| ATPase of the PP family protein [Fusobacterium sp. 3_1_27] Length = 277 Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 20/192 (10%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 36 RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114 A D ++ ++ + I + + + Q A + R ++ + Sbjct: 93 F--EAIDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKV 147 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H FDD +ET + G + + + I RP R Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203 Query: 175 EDIRSFLLQRNI 186 +DI +F+ +I Sbjct: 204 KDIINFMKYNDI 215 >gi|34762504|ref|ZP_00143502.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741809|ref|ZP_04572290.1| PP family ATPase [Fusobacterium sp. 4_1_13] gi|27887837|gb|EAA24907.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429457|gb|EEO39669.1| PP family ATPase [Fusobacterium sp. 4_1_13] Length = 277 Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 20/192 (10%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 36 RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114 A D ++ ++ + I + + + Q A + R ++ + Sbjct: 93 F--EAIDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKV 147 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H FDD +ET + G + + + I RP R Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203 Query: 175 EDIRSFLLQRNI 186 +DI +F+ +I Sbjct: 204 KDIINFMKYNDI 215 >gi|120554711|ref|YP_959062.1| PP-loop domain-containing protein [Marinobacter aquaeolei VT8] gi|205830601|sp|A1U1K6|TTCA_MARAV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120324560|gb|ABM18875.1| tRNA s(2)C-32 sulfurtransferase [Marinobacter aquaeolei VT8] Length = 302 Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 19/178 (10%) Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84 +SGG DS +L L ++ + + A+++D + +V D + I + Sbjct: 56 LSGGKDSYAMLDILLNLQKSAPV-RFELIAVNLD-QKQPG---FPEHVLPDYLESMGIEY 110 Query: 85 SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137 ++ R ++ A+ T I H DD LET+++ Sbjct: 111 HIIEKDTYSIVKEKVPEGKTTCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFL 170 Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195 K M D D + RP R +DI + R P N Sbjct: 171 NMFYGGKLKSMPPVLHSD----DGRNTVIRPLAYAREKDIARYASLREFPII--PCNL 222 >gi|237755420|ref|ZP_04584046.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692420|gb|EEP61402.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 304 Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 28/243 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +E + + ILVAVSGG DS+ L AL + ++ Sbjct: 31 FDNRVEKTIKEFKMFDKNSKILVAVSGGKDSLSLWNALAKL-------GYNVDGFYINLG 83 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------KPQTGLMAAAREARYAL 109 + + ++ ++ ++V K+ +P + RY Sbjct: 84 IGDYSQKSKELALKFAKKIGKTLNIVELKDEIATIPEMKTYDNRPACSICGT--IKRY-F 140 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167 +++ AK + +I T H DD+ V + +++ + + +L + N +I + Sbjct: 141 MNKKAKELGYNIIATGHNLDDEA-AVLFSNTLNWSIEYL---KRQYPVLKEENGFIRKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P + ++ + + I + E+ + + F+ ++ + K++ + + Sbjct: 197 PLCKISEKESAIYAILSGIEYIEEECPYSVGATSIDYKLFLSQLEEKSPGTKLRFYSEFL 256 Query: 228 VKV 230 K+ Sbjct: 257 RKM 259 >gi|254303881|ref|ZP_04971239.1| possible PP-loop family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324073|gb|EDK89323.1| possible PP-loop family ATPase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 277 Score = 80.0 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 16/189 (8%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + +++V+ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 37 NFVKAVKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKTI 117 A D ++ ++ + I + W+ + ++ + R ++ + + + Sbjct: 94 --EAIDVDKFKENLIE-MGIDCELFDANVWQIAFEESPESPCFLCAKMRRGVLYKKVEEL 150 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H FDD +ET + G + + + I RP R +DI Sbjct: 151 GFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKDI 206 Query: 178 RSFLLQRNI 186 +F+ +I Sbjct: 207 INFMKYNDI 215 >gi|260889780|ref|ZP_05901043.1| PP-loop family protein [Leptotrichia hofstadii F0254] gi|260860386|gb|EEX74886.1| PP-loop family protein [Leptotrichia hofstadii F0254] Length = 310 Score = 80.0 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 19/186 (10%) Query: 12 FVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 F+R+L I VA+SGG DS+ LL L L S IS++ Sbjct: 66 FIRALKEFEMVKDGDRIAVAISGGKDSL-LLSKLFQELKRASRTNFDLVFISMNPGFNP- 123 Query: 66 AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + L I + + + R + A ++ Sbjct: 124 --ANLNNLKKNLEHLNIPCEIYNDNIFEIAEKIAKDYPCYMCAKMRRGSLYTKAASLGCN 181 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + H FDD +ET M G + + + + + RP + I + Sbjct: 182 KLALGHHFDDVIETTLMSMF----YMGKFETMLPKLKSDNFEIELIRPLFYVEEKAIIKW 237 Query: 181 LLQRNI 186 + I Sbjct: 238 VRNNGI 243 >gi|326795425|ref|YP_004313245.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas mediterranea MMB-1] gi|326546189|gb|ADZ91409.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas mediterranea MMB-1] Length = 278 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 31/191 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS +L L ++ + I+F ++V+ H L Sbjct: 37 GDKVMVCLSGGKDSYTMLEILLNLQAS---APIEFEIVAVNLDQKQPGFPEHIL------ 87 Query: 69 EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +Y+ D+ I +S+V + +T R + A+ I AT I Sbjct: 88 -PKYLEDIGVNFHILERDTYSIVKEVVPEGKT-TCGLCSRLRRGSLYGFAEEIGATKIAL 145 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD LET+++ K S + D + RP C+ EDI F + Sbjct: 146 GHHRDDILETLFLNMFFGGKLK----SMPPKLLSDDGKHVVIRPLAYCKEEDIEKFADYK 201 Query: 185 NISWCEDPSNT 195 + P N Sbjct: 202 SFPII--PCNL 210 >gi|261403374|ref|YP_003247598.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] gi|261370367|gb|ACX73116.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] Length = 304 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 19/183 (10%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILVAVSGG D L + ++ ++ + + +R V Sbjct: 43 KMLNKDEKILVAVSGGKDGHVAAWILKKL-------GYNIELFHINLGIKGFSDESLRAV 95 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISEHAKTINATLIMTA 125 + RL VV K +T + + RY L+++ +I+T Sbjct: 96 KALAERLNTPLHVVDLKEITGKT-IEDIRGKKCSICGITKRY-LMNKFGYERGFDVIITG 153 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 H DD++ + + + ++ + + +D L + F I + Sbjct: 154 HNLDDEI-SFILNNVLNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIDEYLILKYAEAEE 211 Query: 186 ISW 188 I + Sbjct: 212 IPF 214 >gi|307945599|ref|ZP_07660935.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Roseibium sp. TrichSKD4] gi|307771472|gb|EFO30697.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Roseibium sp. TrichSKD4] Length = 312 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 17/189 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R+ P LV +SGG DS LL L + R + A ++D + +V Sbjct: 51 RAREKPVKWLVCLSGGKDSYALLAVLTEL-KWRGLLPVDILACNLD-QAQPGFPADVLP- 107 Query: 74 SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + H ++ + R ++ A+ ++ H Sbjct: 108 -KFFEDNGVEHLIIREDTYSIVTDKIPAHRTYCSLCSRLRRGILYRVARENGCETVVLGH 166 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 +D LET +M G S + + +L + RP DI F Sbjct: 167 HREDILETFFMNLFHG----GRLASMPPKLVNDEGDLLVLRPLAYSAESDIAKFASGMEF 222 Query: 187 SWCEDPSNT 195 P N Sbjct: 223 PII--PCNL 229 >gi|46198414|ref|YP_004081.1| veg136 protein [Thermus thermophilus HB27] gi|46196036|gb|AAS80454.1| veg136 protein [Thermus thermophilus HB27] Length = 321 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 23/204 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ E R L+ +LVAVSGG DS+ L L + I+ Sbjct: 30 FVKETERAIRRHRMLLPGERVLVAVSGGKDSLALWDVLSRLGYQAVGLHIEL-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA--------RYALI 110 + E +K + + VV K + A R A RY +I Sbjct: 83 IGEYSKRSLEVTQAFARERGLELLVVDLKEAYGFGVPELARLSGRVACSACGLSKRY-II 141 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169 ++ A ++ T H DD+ ++ + LS + L +PF Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEETLSRQGPVLPEKPGLAARVKPF 198 Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193 R ++ S+ L R I + + Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222 >gi|108759455|ref|YP_634115.1| hypothetical protein MXAN_5980 [Myxococcus xanthus DK 1622] gi|123247362|sp|Q1CZQ8|TTCA_MYXXD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|108463335|gb|ABF88520.1| conserved hypothetical protein [Myxococcus xanthus DK 1622] Length = 284 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 21/179 (11%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--H-CLRETAKDEV 70 R + I+V VSGG DS +L L + R+ K + A+++D H K E Sbjct: 27 RLIEDGDRIMVGVSGGKDSYTMLHLLRELQR-RAPVKFELLAVNLDQGHPGF-PADKLEA 84 Query: 71 RYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 + R + + + + P + R ++ A + T I Sbjct: 85 YF-----QREGYPYKLLKEDTYSIVLEKTPPGKTQCSVCSRMRRGILYTAAVELGCTKIA 139 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 H DD + T+ + G + D + RP +DI F Sbjct: 140 LGHHRDDLIHTLLLNLF----FAGSIKAMPPLLRSDDGRNVVIRPLCYAPEKDIAKFAE 194 >gi|74318526|ref|YP_316266.1| putative cell cycle control ATPase [Thiobacillus denitrificans ATCC 25259] gi|74058021|gb|AAZ98461.1| putative cell cycle control ATPase [Thiobacillus denitrificans ATCC 25259] Length = 251 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72 R + IL+ +SGG D L+ L ++ K + A +VD + + Sbjct: 28 RMIRDGDRILLGLSGGKD-SLSLLHALHHLQQKAPVKFELLACTVD----PQSDQFDPSP 82 Query: 73 VSDVCSRLRIAHSVVS--------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 ++ + L + + + S +K A R ++ A+ +I Sbjct: 83 LAPYMAALGVPYFLESQPILEDAQRTLTKDTDSYCAYCSRMRRGILYRVAREQRCNVIAL 142 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 A DD ET+ M + M + D +L I RP R R+F Sbjct: 143 AQHLDDLAETLMMSMFFGGKLRTMSPHYLND----AGDLRIIRPLAYARERQTRAFAADA 198 Query: 185 NISWC 189 + Sbjct: 199 GLPVI 203 >gi|41615074|ref|NP_963572.1| hypothetical protein NEQ283 [Nanoarchaeum equitans Kin4-M] gi|40068798|gb|AAR39133.1| NEQ283 [Nanoarchaeum equitans Kin4-M] Length = 268 Score = 79.6 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 24/209 (11%) Query: 4 SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++++ + SL P +L+A+SGG DS+ LL L+++ I + Sbjct: 9 KVLDTIKRY--SLFSPNEKLLLAISGGKDSVTLLDILYNLNYKFDLYFIDL-------GI 59 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKT 116 + + + V + + + + + A + L+++ A Sbjct: 60 KGFSDISEKIVESLSKEYGLNLYIDRVADYGITIKPIGKMPACAVCGIVKRYLMNKFAYE 119 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + TLI TAH FDD + E + + + Y +P R ++ Sbjct: 120 KDYTLI-TAHNFDDIIAFALANLFSGNYEYLLKIRPKNER--YYKLAKKVKPLFFVREKE 176 Query: 177 IRSFLLQRNISWC--EDP---SNTDDRFE 200 ++ ++N+ + E P NT DR++ Sbjct: 177 TLQYVKEKNLPYVNIECPLRRKNTQDRYK 205 >gi|326475107|gb|EGD99116.1| PP-loop ATPase superfamily protein [Trichophyton tonsurans CBS 112818] Length = 402 Score = 79.6 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 12/181 (6%) Query: 43 LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS-----------WKN 91 L++R + +S+D ++ D + V + + +VS Sbjct: 49 LNERYNYGLDLVLLSIDEGIKGYRDDSLETVKRNAIQYEMPLEIVSYGELYGWTMDQVVA 108 Query: 92 SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151 + G R + A +N ++T H DD ETV M R + + S Sbjct: 109 EIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVTGHNADDVAETVMMNLLRGDLPR-LARS 167 Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 T ++ S+P ++I + + + + R R ++D+ Sbjct: 168 TSIITGSAASDIKRSKPLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGSARTLIKDL 227 Query: 212 D 212 + Sbjct: 228 E 228 >gi|222109722|ref|YP_002551986.1| pp-loop domain-containing protein [Acidovorax ebreus TPSY] gi|254789874|sp|B9MCI6|TTCA_ACIET RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|221729166|gb|ACM31986.1| PP-loop domain protein [Acidovorax ebreus TPSY] Length = 317 Score = 79.6 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + R+ K A+++D + +V D Sbjct: 57 GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 111 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + + R A++ + A + T + H DD Sbjct: 112 KSIGVQYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADDLGCTKLALGHHRDD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T+ + KGM + D + RP +D + + Sbjct: 172 IVATLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTARWAQYQQFPII- 226 Query: 191 DPSNT 195 P N Sbjct: 227 -PCNL 230 >gi|47199436|emb|CAF87748.1| unnamed protein product [Tetraodon nigroviridis] Length = 286 Score = 79.6 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 12/169 (7%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG D L + +L++R + +SVD + D + V + Sbjct: 53 VGIAASGGKDFTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111 Query: 82 IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +VS++ R + A + I T H DD Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ETV M R G+ Y+ + + F + +D+ S Sbjct: 172 VAETVLMNVLRASEGDGVVPRCKPLKYAYEKEIVLYAYFKKTFLKDLES 220 >gi|319761311|ref|YP_004125248.1| pp-loop domain protein [Alicycliphilus denitrificans BC] gi|317115872|gb|ADU98360.1| PP-loop domain protein [Alicycliphilus denitrificans BC] Length = 310 Score = 79.6 bits (195), Expect = 9e-13, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + R+ K A+++D + +V D Sbjct: 50 GDRIMVCMSGGKDSYTLLDILRRLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 104 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + + R A++ + A + T + H DD Sbjct: 105 KSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELRCTKLALGHHRDD 164 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T+ + KGM + D + RP +D + + Sbjct: 165 IVATLMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPII- 219 Query: 191 DPSNT 195 P N Sbjct: 220 -PCNL 223 >gi|121592925|ref|YP_984821.1| C32 tRNA thiolase [Acidovorax sp. JS42] gi|205830365|sp|A1W3C0|TTCA_ACISJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120605005|gb|ABM40745.1| tRNA s(2)C-32 sulfurtransferase [Acidovorax sp. JS42] Length = 317 Score = 79.6 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 I+V +SGG DS LL L + R+ K A+++D + +V D Sbjct: 57 GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 111 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + + V + + R A++ + A + T + H DD Sbjct: 112 KSIGVQYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADDLGCTKLALGHHRDD 171 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 + T+ + KGM + D + RP +D + + Sbjct: 172 IVATLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTARWAQYQQFPII- 226 Query: 191 DPSNT 195 P N Sbjct: 227 -PCNL 230 >gi|55980446|ref|YP_143743.1| ATP pyrophosphatase [Thermus thermophilus HB8] gi|55771859|dbj|BAD70300.1| probable ATP pyrophosphatase, PP-loop superfamily [Thermus thermophilus HB8] Length = 320 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 23/204 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ E R L+ +LVAVSGG DS+ L L + I+ Sbjct: 30 FVKETERAIRRHRMLLPGERVLVAVSGGKDSLALWDVLSRLGYQAVGLHIEL-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA--------RYALI 110 + E +K + + VV K + A R A RY +I Sbjct: 83 IGEYSKRSLEVTQAFARERGLELLVVDLKEAYGFGVPELARLSGRVACSACGLSKRY-II 141 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169 ++ A ++ T H DD+ ++ + LS + L +PF Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEETLSRQGPVLPEKPGLAARVKPF 198 Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193 R ++ S+ L R I + + Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222 >gi|262068052|ref|ZP_06027664.1| PP-loop family protein [Fusobacterium periodonticum ATCC 33693] gi|291378274|gb|EFE85792.1| PP-loop family protein [Fusobacterium periodonticum ATCC 33693] Length = 276 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 20/191 (10%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 37 NFIKAIKEF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115 A D ++ ++ + I + + + Q A + R ++ + + Sbjct: 94 --EALDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKVE 148 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H FDD +ET + G + + + I RP R + Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204 Query: 176 DIRSFLLQRNI 186 DI +F+ I Sbjct: 205 DIINFMKYNEI 215 >gi|262037772|ref|ZP_06011214.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] gi|261748244|gb|EEY35641.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia goodfellowii F0264] Length = 295 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 19/186 (10%) Query: 12 FVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 F+R L I VA+SGG DS+ LL L L S + IS++ E Sbjct: 53 FIRGLKEFEMVKDGDKIAVAISGGKDSL-LLSKLFQELKRASKTNFELVFISMNPGFNE- 110 Query: 66 AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + L I + + + R + A + Sbjct: 111 --VNLTNLRKNLEHLEIPCEIYNDNIFEVAEKIAKDYPCYMCAKMRRGSLYTKAASYGCN 168 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + H DD +ET M G + + + ++ + RP + I + Sbjct: 169 KLALGHHLDDVIETTLMSIF----YMGKFETMLPKLKADNFDIELIRPLFYVEEKSIIKW 224 Query: 181 LLQRNI 186 + I Sbjct: 225 IRNNGI 230 >gi|237740722|ref|ZP_04571203.1| PP family ATPase [Fusobacterium sp. 2_1_31] gi|294782124|ref|ZP_06747450.1| ATPase of the PP family protein [Fusobacterium sp. 1_1_41FAA] gi|229422739|gb|EEO37786.1| PP family ATPase [Fusobacterium sp. 2_1_31] gi|294480765|gb|EFG28540.1| ATPase of the PP family protein [Fusobacterium sp. 1_1_41FAA] Length = 277 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 20/191 (10%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + I++++ F L+ I V VSGG DS+ L + DRS + IS++ Sbjct: 37 NFIKAIKEF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115 A D ++ ++ + I + + + Q A + R ++ + + Sbjct: 94 --EALDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKVE 148 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H FDD +ET + G + + + I RP R + Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204 Query: 176 DIRSFLLQRNI 186 DI +F+ I Sbjct: 205 DIINFMKYNEI 215 >gi|312134203|ref|YP_004001541.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor owensensis OL] gi|311774254|gb|ADQ03741.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor owensensis OL] Length = 303 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R ILV +SGG DSM L L + + ++ + + + + V Sbjct: 42 RMFDKKDKILVVISGGKDSMALWHILAK-------EGYNVTGMYINLGIGQYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + V K + + + L ++ A + + Sbjct: 95 ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKIAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ + E + ++ + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESIHPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPS 193 I + D Sbjct: 214 NKIEFLHDEC 223 >gi|66770486|ref|YP_245248.1| C32 tRNA thiolase [Xanthomonas campestris pv. campestris str. 8004] gi|81303567|sp|Q4UNZ5|TTCA_XANC8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|66575818|gb|AAY51228.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 300 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 20/242 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L + A+++D + +V Sbjct: 46 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 101 Query: 76 VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ + V + + + R + +A+ T I H Sbjct: 102 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 161 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187 DD + T +M L+ M + D + RP R DI ++ R Sbjct: 162 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQFP 216 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + R+ V + + + + + + + Sbjct: 217 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVDQIARALGDVRPEQLADRTLFDFP 273 Query: 248 SI 249 + Sbjct: 274 GL 275 >gi|15921747|ref|NP_377416.1| hypothetical protein ST1453 [Sulfolobus tokodaii str. 7] gi|15622534|dbj|BAB66525.1| 322aa long hypothetical veg136 protein [Sulfolobus tokodaii str. 7] Length = 322 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 28/214 (13%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVS 74 L IL+AVSGG DS L L S + + + E V + Sbjct: 44 LQKAKKILLAVSGGKDSFVLADTLASFIDHNKLIAYNIV-----EGIHGYNRKEQVEQLK 98 Query: 75 DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARYALISEHAKTINA 119 + L I S+K+S T R LI+ + +NA Sbjct: 99 KFLTDLGIELIEDSFKDSVGYTLDEMVKSSMEKGLNVSACTFCGGFRRKLINNAGRMVNA 158 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDI 177 + T H DD+++ + + R + L D L + ++ R P + + Sbjct: 159 DYVATGHNLDDEVQAIVINLIRGDLIR---LIRFGDKPLKLSSKFVLRVKPLRKIYEWET 215 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211 + + ++ E R +R VR++ Sbjct: 216 TMYAYYKGYNFQEVECPY--ITTRPTLRAKVREL 247 >gi|150391073|ref|YP_001321122.1| PP-loop domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950935|gb|ABR49463.1| PP-loop domain protein [Alkaliphilus metalliredigens QYMF] Length = 287 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 12/173 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I +A+SGG DS+ L+ L L + I +D E+ K + D C Sbjct: 53 GDKIAIAISGGKDSL-LMAKLFQELHRHGTANFQMEFIVMDPGYHESIK---ALLVDNCK 108 Query: 79 RLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I + + + + + R + + A+ + + H ++D +E Sbjct: 109 HLEIPVHIFEARIFEVAEKMAKEYPCFMCAKMRRGALYQKAQELGCNKLALGHHYNDVIE 168 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T + L + T + I RP E I F I Sbjct: 169 TTMLNLL-YTGNFKTMLPKLKSTNF--EGMEIIRPLYLIEEEAIIDFTESSGI 218 >gi|256546122|ref|ZP_05473475.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170] gi|256398239|gb|EEU11863.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170] Length = 270 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 16/216 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I++V+ + + + A+SGG DS+ L L L S + I +D Sbjct: 22 KFIKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSNVNFEVEYICMDPGYD 79 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEHAKTIN 118 + +D + L I + + + R + AK + Sbjct: 80 KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGEYPCYMCARMRRGFLYAKAKELG 136 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + H +D +ET M K M M ++ + RP +D+ Sbjct: 137 CNKVALGHHMNDAIETTLMNVLYAGNYKTMKPKLMAQNF---DDMELIRPMYFIEEKDVI 193 Query: 179 SFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDI 211 ++ +S + + + R +++ + D+ Sbjct: 194 AWRDYVGLSALNCACTVTKKSESYTRKKIKNLIEDL 229 >gi|21233521|ref|NP_639438.1| hypothetical protein XCC4099 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|81792269|sp|Q8P3H2|TTCA_XANCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|205830643|sp|B0RYY8|TTCA_XANCB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|21115375|gb|AAM43320.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 300 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 20/242 (8%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L + A+++D + +V Sbjct: 46 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 101 Query: 76 VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ + V + + + R + +A+ T I H Sbjct: 102 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 161 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187 DD + T +M L+ M + D + RP R DI ++ R+ Sbjct: 162 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARHFP 216 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + R+ V + + + + + + + Sbjct: 217 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVDQIARALGDVRPEQLADRTLFDFP 273 Query: 248 SI 249 + Sbjct: 274 GL 275 >gi|331083660|ref|ZP_08332771.1| hypothetical protein HMPREF0992_01695 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403871|gb|EGG83423.1| hypothetical protein HMPREF0992_01695 [Lachnospiraceae bacterium 6_1_63FAA] Length = 292 Score = 79.2 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 8/147 (5%) Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYL 218 RP L +R +I +L + ISW D +N + + R ++R + + + Sbjct: 9 IRPLLFVKRAEIEKYLKGQGISWVTDSTNEETEYTRNKIRHQIIPVIEEINPQAVSCIGR 68 Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278 + + + +L KY+ I+++ + + YL+ Sbjct: 69 AAENMWKIEEYLQEQTDILYRKYVKKT-GDTFCIAKECFSEKEIMQSYLIMRVLEQASKG 127 Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSIG 305 +E V K VS+ Sbjct: 128 KKNITATHIEAVRRLFKGRTGASVSLA 154 >gi|260577134|ref|ZP_05845111.1| PP-loop domain protein [Rhodobacter sp. SW2] gi|259020608|gb|EEW23927.1| PP-loop domain protein [Rhodobacter sp. SW2] Length = 287 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 15/173 (8%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 LV +SGG DS LL LH + R + A ++D + + V + Sbjct: 42 RGDRWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLDQG-QPGFPETVLP--EFL 97 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 +R+ +AH + + A R + A+ + ++ H DD Sbjct: 98 TRMGVAHRIEYQDTYSIVMDKVPAGQTTCALCSRLRRGNLYRIAREEGCSTVVLGHHRDD 157 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 LET +M G + + + +L++ RP D +F Sbjct: 158 ILETFFMNLFHG----GRLATMPPRLLNEEGDLFVCRPLAMVAEADCDAFARA 206 >gi|319408558|emb|CBI82211.1| conserved hypothetical protein [Bartonella schoenbuchensis R1] Length = 276 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 76/233 (32%), Gaps = 44/233 (18%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L I L LVA+SGG DS AL L R +I+ A ++ Sbjct: 32 LLRHIRQAFDDFSMLSSGKKWLVALSGGKDS----YGLLALLLDLKWRGLLQIEILACNL 87 Query: 59 D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103 D H L D + +I + + V P + Sbjct: 88 DQGQPGFPKHILP-----------DYLNNYQIPYRIEYQDTYSVVTDKLTPTQTYCSLCS 136 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162 R + A+ + ++ H DD LET +M L+ M ++ D Sbjct: 137 RLRRGHLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGD 191 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212 L++ RP + ED++ F P N +R ++ + DI+ Sbjct: 192 LFVLRPLVYAAEEDMKKFSQAMQFPII--PCNLCGSQSGLQRNVIKEMLNDIE 242 >gi|254502065|ref|ZP_05114216.1| hypothetical protein SADFL11_2103 [Labrenzia alexandrii DFL-11] gi|222438136|gb|EEE44815.1| hypothetical protein SADFL11_2103 [Labrenzia alexandrii DFL-11] Length = 347 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 15/167 (8%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L + R + A ++D + + Sbjct: 91 KWLVCLSGGKDSYTLLAVLIEL-KWRGVLPVDLVACNLD---QAQPGFPPEILPKFFEDN 146 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I H +V + R ++ A+ I+ H DD LE Sbjct: 147 GIEHIIVREDTYSIVTDKIPEHRTYCSLCSRLRRGILYRVAREQGCEAIVLGHHRDDILE 206 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 T +M G S I + +L + RP DI+ F Sbjct: 207 TFFMNLFHG----GRLASMPPKLINDEGDLLVLRPLAYAAERDIQKF 249 >gi|86133422|ref|ZP_01052004.1| PP-loop family protein [Polaribacter sp. MED152] gi|85820285|gb|EAQ41432.1| PP-loop family protein [Polaribacter sp. MED152] Length = 265 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 28/208 (13%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS LL L A+++D + +EV S Sbjct: 28 GDKIMVCLSGGKDSYTLLDLLLYFQKVAPI-NFDLIAVNLD-QKQPGFPEEVLP--TYLS 83 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 L++ ++ K + R + E AK + + H +D Sbjct: 84 NLKVDFKIIEKNTYKVVMDKTPEGKTTCSLCSRLRRGTLYEAAKDLGCNKLALGHHKNDI 143 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNI 186 LET ++ SG +T+ +L + RP C DI F +N Sbjct: 144 LETFFLNMF---------FSGKLETMPPKFKNDAGDLVVLRPLAFCNESDIEEFSNYKNY 194 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLH 214 P N + R+ V+++ H Sbjct: 195 PII--PCNLCGS-QENLQRKKVKEMIAH 219 >gi|330834635|ref|YP_004409363.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566774|gb|AEB94879.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4] Length = 321 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 81/246 (32%), Gaps = 31/246 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 +E V + + + VAVSGG DS LL L + F I++D + Sbjct: 38 VEKVIKEYKMISEKDVVAVAVSGGKDSTTLLHILKGLSERNGF---DLVGINIDLGIDNG 94 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE---------ARYALIS 111 + + + + V+ K A AR RY ++ Sbjct: 95 TKYSALSTELAVKNFELTHVRYKVIELKREYGFGIDEAKLKARRPVCSTCGLVKRY-VLE 153 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWI--SR 167 E A+++ A ++ T H +D M L + + N +I + Sbjct: 154 EAAESVGANVLATGHNLND------MAVFVMSGYHTGDLQNLARLRAVSPAENGYIKKVK 207 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRF---ERVRVRRFVRDIDLHALYLKMKKFQ 224 P ++ ++ + I + D + ++RR + + + ++ + Sbjct: 208 PLFLTSEKETATYAIVNKIPFIMDSCPNNPSVGGPTSDKLRRLIENTEDEIPGFMVRLVE 267 Query: 225 DLRVKV 230 + K+ Sbjct: 268 NFENKI 273 >gi|222148435|ref|YP_002549392.1| C32 tRNA thiolase [Agrobacterium vitis S4] gi|221735423|gb|ACM36386.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 295 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 18/217 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 L+ +SGG DS GLL L + R ++ A ++D + ++V D Sbjct: 64 KRWLIGLSGGKDSYGLLALLMDL-KWRGLLPVELIACNLDQG-QPN---FPKHVLPDYLK 118 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + H + K P G + R + A+ ++ H +D Sbjct: 119 SIGMPHRIEYRDTYSIVKEKVPAGGTYCSLCSRLRRGNLYRIAREEGCDALVLGHHREDI 178 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190 LET +M G + + + +L++ RP +D+ F Sbjct: 179 LETFFMNFFHG----GRLAAMPAKLLNDEGDLFVLRPLAYAAEDDLAKFAAAMQFPIIPC 234 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D + D +R ++ + I+ K + L Sbjct: 235 DLCGSQDGLQRNAMKDMLAGIEAKMPGRKDAMLRALS 271 >gi|254429034|ref|ZP_05042741.1| PP-loop family [Alcanivorax sp. DG881] gi|196195203|gb|EDX90162.1| PP-loop family [Alcanivorax sp. DG881] Length = 297 Score = 78.8 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ + F ++V+ ++ + + Sbjct: 50 GDKVMVCLSGGKDSYTMLEILRNLQ---HSAPVNFELVAVN-MDQKQPGFPEHILPEYLE 105 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +A+ ++ R + A+ I A I H DD Sbjct: 106 KEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDI 165 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190 +ET+++ G + M + D N + RP CR +DI F + Sbjct: 166 VETLFLNMF-----YGGKMKAMPPKLRSDDNRNVVIRPLAYCREKDIIEFSALKEYPII- 219 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ R+ ++D+ + + +++ V N + ++ Sbjct: 220 -PCNLCGS-QKNLQRQVIKDMLQQWDKQQPGRIENIFAAVQNIAPSQLADTRLFDFENL 276 >gi|20093584|ref|NP_613431.1| ATPase [Methanopyrus kandleri AV19] gi|19886440|gb|AAM01361.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Methanopyrus kandleri AV19] Length = 263 Score = 78.8 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 19/192 (9%) Query: 7 ESVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCL 62 + ++ VR +P + ILVA+SGG DS + L + + +VD Sbjct: 29 DKIKECVRRSGHPRPGSRILVAMSGGKDSFAVAFGLKRLRGGYGWEVEGAHVAPTVDGK- 87 Query: 63 RETAKDEVRYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + + +V V + L I V+ K + A R R + + A+ Sbjct: 88 -KISAWDV--VEEQAKILEIHAYLLEPESDVLELKEEMNARKVCYACRTLRRIELGQLAE 144 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 I HT DD TV + L + T + + RP +RC Sbjct: 145 EKGFDYIALGHTLDDAAATVILSLLTGAER----LKLLWYTGTWRGGPRLIRPLVRCPEA 200 Query: 176 DIRSFLLQRNIS 187 ++ + + Sbjct: 201 VTKALAEELKVD 212 >gi|212703980|ref|ZP_03312108.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098] gi|212672593|gb|EEB33076.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098] Length = 354 Score = 78.8 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 38/200 (19%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE + F R ILVA+SGG DS+ L++ + S + + +D + Sbjct: 90 IEGQKLFTRD----ERILVALSGGKDSLALML-------ELSRQGYDVTGLHIDLGI-PE 137 Query: 66 AKDEVR-YVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAK 115 + R V C++ + V + + + +A + + ++ A Sbjct: 138 SSPVARGVVERFCAKHGLKLMVKELAAEGLAIPLVKERLNRPVCSACGKIKRHFFNKVAL 197 Query: 116 TINATLIMTAHTFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRP 168 + T H DD++ ++ + R D + G G +P Sbjct: 198 DEGFDALATGHNLDDEVARLFSNTLRWDTAYLSDQGPRLDGEDGFARK---------VKP 248 Query: 169 FLRCRREDIRSFLLQRNISW 188 R + ++ I Sbjct: 249 LWRLSEFETANYAFLMGIEH 268 >gi|256845151|ref|ZP_05550609.1| PP family ATPase [Fusobacterium sp. 3_1_36A2] gi|256718710|gb|EEU32265.1| PP family ATPase [Fusobacterium sp. 3_1_36A2] Length = 277 Score = 78.8 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%) Query: 3 LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 + +++++ F L+ I V VSGG DS+ L + DR+ + IS++ Sbjct: 36 RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRN-KNFEVKFISMNPG 92 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114 A D ++ ++ + I + + + Q A + R ++ + Sbjct: 93 F--EAIDIDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPNSPCFLCAKMRRGVLYKKV 147 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H FDD +ET + G + + + I RP R Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203 Query: 175 EDIRSFLLQRNI 186 +DI +F+ +I Sbjct: 204 KDIINFMKYNDI 215 >gi|300120077|emb|CBK19631.2| unnamed protein product [Blastocystis hominis] Length = 190 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 MR R GL+ M D RP L + + + +RN+ + DPSN D Sbjct: 1 MRLFRGSGI--AGLACMKQIQTMDDGTRRIRPLLYQSKASLEATCKERNVPFVLDPSNLD 58 Query: 197 DRFERVRVRRFVRD------IDLHALYLKMKKFQDLR 227 ++R R+R V+ + L + FQ +R Sbjct: 59 LTYDRNRIRSGVQQLKSNGSLQGPMLLEAIAYFQSVR 95 >gi|297544017|ref|YP_003676319.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841792|gb|ADH60308.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 300 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 23/231 (9%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I R F + +LV VSGG DSM L L A+ ++ + Sbjct: 35 LKNIRKNRMFEK----GEKVLVVVSGGKDSMALWDILVK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + V K + + + L ++ Sbjct: 84 GEYSNRSQEVVEKFAKENNLPLIVKDIKKEFGLDIYKLSKTLRRSPCSVCGSIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + + T H DD+ T++ ++ E + G + + +P Sbjct: 144 VAYDGGFSAVATGHNLDDEAATLFGNVL-NWEEGYLARQGPVLPQTHPKLIKKVKPLYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 + ++L I + + R + + V + ++F Sbjct: 203 TERENMYYVLLNKIEFLHEECPHSVG-ARSILYKEVLNKLEEESPGTKQRF 252 >gi|251792546|ref|YP_003007272.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] gi|247533939|gb|ACS97185.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] Length = 322 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS LL L ++ + IKF ++V+ H L Sbjct: 51 GDKVMVCLSGGKDSYTLLDILLNLQQN---APIKFDIVAVNLDQKQPGFPEHVL------ 101 Query: 69 EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I + +V K + +T + R ++ A + T I Sbjct: 102 -PNYLQSISVDYKIIEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGVTKIAL 159 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD L T+++ G L M ++ D I RP C+ +DI + + Sbjct: 160 GHHRDDMLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 214 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 215 KAFPII--PCNL 224 >gi|257456412|ref|ZP_05621608.1| PP-loop domain protein [Treponema vincentii ATCC 35580] gi|257446072|gb|EEV21119.1| PP-loop domain protein [Treponema vincentii ATCC 35580] Length = 235 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 10/156 (6%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVRYVSD 75 IL+A SGG DS L + L R + + +A+ + D E A + Sbjct: 22 AGDRILIAASGGKDSTALTEYFAARL-QRRYPVFEAAALHIATDIG-SEFAPELAERFKS 79 Query: 76 VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135 L I V + + R +S++A+ I H DD LETV Sbjct: 80 WGISLHIKTISVLDRLKTGKKMNCWWCSSQRRLELSKYAQEHGFNKIALGHHLDDILETV 139 Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFL 170 M + L+ M + +D L RP Sbjct: 140 LMNALTKGE-----LAAMPPVLKFDKFPLTFIRPLC 170 >gi|118588580|ref|ZP_01545988.1| hypothetical protein SIAM614_17779 [Stappia aggregata IAM 12614] gi|118438566|gb|EAV45199.1| hypothetical protein SIAM614_17779 [Stappia aggregata IAM 12614] Length = 312 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 54/182 (29%), Gaps = 17/182 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 LV +SGG DS LL L + R + A ++D + + Sbjct: 57 KWLVCLSGGKDSYTLLAVLIEL-KWRGLLPVDLIACNLD---QAQPGFPTDILPKFFEDN 112 Query: 81 RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I H +V + R ++ A+ I+ H +D LE Sbjct: 113 GIEHIIVREDTYSIVTDKIPEHRTYCSLCSRLRRGILYRIAREQGCEAIVLGHHREDILE 172 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T +M G S I + +L + RP DI F P Sbjct: 173 TFFMNLFHG----GRLASMPPKLINDEGDLLVLRPLAYSAESDIARFASGMQFPII--PC 226 Query: 194 NT 195 N Sbjct: 227 NL 228 >gi|110834127|ref|YP_692986.1| hypothetical protein ABO_1266 [Alcanivorax borkumensis SK2] gi|123345558|sp|Q0VQ34|TTCA_ALCBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|110647238|emb|CAL16714.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 284 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 18/238 (7%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS +L L ++ + F ++V+ ++ + + Sbjct: 37 GDKVMVCLSGGKDSYTMLEILRNLQ---HSAPVNFELVAVN-MDQKQPGFPEHILPEYLE 92 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + +A+ ++ R + A+ I A I H DD Sbjct: 93 KEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDI 152 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET+++ K M D + RP CR +DI F + Sbjct: 153 VETLFLNMFYGGKMKAM----PPKLRSDDSRNVVIRPLAYCREKDIIEFSALKEYPII-- 206 Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N ++ R+ ++++ + + +++ V N + ++ Sbjct: 207 PCNLCGS-QKNLQRQVIKEMLQQWDKQQPGRIENIFAAVQNIAPSQLADTRLFDFENL 263 >gi|42525970|ref|NP_971068.1| hypothetical protein TDE0454 [Treponema denticola ATCC 35405] gi|41816020|gb|AAS10949.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 276 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 24/241 (9%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ F + + IL+A SGG DS L S+ R + + A+ + Sbjct: 49 RTIDRAVFDYKMIEEGDRILLAASGGKDSTALAEYF-SMRLKRPSPRFEVHAMHI----- 102 Query: 64 ETAKDEV-----RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHA 114 A D + I ++ + R +++ A Sbjct: 103 --ATDVAPPLSPDLIKMF-ENWNIPLTIKTVSVLGRLKPNEKMNCWWCSTQRRTELNKFA 159 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCR 173 I H DD LET+ M EKG+ LS M + ++ + + RP Sbjct: 160 MEEGFNKIALGHHLDDILETLLMN----SLEKGI-LSTMPPVLKFEKYPVTMIRPLCLAD 214 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 I Q N + R R + + + LK+ F L+ + Sbjct: 215 LPMIIRHSEQAGYICSTCTCNFQENSARKTARSRLDRLTGGSYKLKINLFNSLKNILPEY 274 Query: 234 V 234 + Sbjct: 275 L 275 >gi|149925908|ref|ZP_01914171.1| hypothetical protein LMED105_02630 [Limnobacter sp. MED105] gi|149825196|gb|EDM84407.1| hypothetical protein LMED105_02630 [Limnobacter sp. MED105] Length = 290 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77 ++V VSGG DS L +L R I F ++V+ + +EV + Sbjct: 43 GDKVMVCVSGGKDS---YGLLDILLLLRQRAPINFDIVAVNLDQKQPGFPEEVLP--NYL 97 Query: 78 SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + ++ + + + + R ++ A + AT + H DD Sbjct: 98 RSINVSFHIEEQDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVASELGATKVALGHHKDD 157 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189 L+T+ + G + GM ++ D I RP CR D+ + +++ Sbjct: 158 ILQTLLLNLF-----YGGRMKGMPPKLVSDNGEHTIIRPLAYCRESDLARYAEEKSFPII 212 Query: 190 EDPSNT 195 P N Sbjct: 213 --PCNL 216 >gi|109898381|ref|YP_661636.1| PP-loop superfamily ATPase [Pseudoalteromonas atlantica T6c] gi|123171263|sp|Q15U56|TTCA_PSEA6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|109700662|gb|ABG40582.1| tRNA s(2)C-32 sulfurtransferase [Pseudoalteromonas atlantica T6c] Length = 318 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L + I FS I+V+ L + +V + Sbjct: 56 GDKVMVCLSGGKDSYTMLDMLLHMQKA---APISFSIIAVN--LDQKQPGFPEHVLPNYL 110 Query: 78 SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 L + +++ + R ++ +A + T I H DD Sbjct: 111 EGLGVDFAIIEEDTYSIVVDKVPEGKTTCSLCSRLRRGILYSNAIKMGVTKIALGHHRDD 170 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ + K S D + RP C +DI + + Sbjct: 171 MLETLFLNMFHNGRLK----SMPPKLTSDDGRNVVIRPLAYCAEQDIADYSILSGFPII- 225 Query: 191 DPSNT 195 P N Sbjct: 226 -PCNL 229 >gi|315231707|ref|YP_004072143.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus MP] gi|315184735|gb|ADT84920.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus MP] Length = 307 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 27/188 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + L ILV VSGG DS + L + + ++ + E + Y Sbjct: 42 KLLKRDERILVVVSGGKDSAVVSYVLKKL-------GYNIECLYINLGIGEYSAKSEEYA 94 Query: 74 SDVCSRLRIAHSVVSW-----------KNSKPQTGLMAAAREARYALISEHAKTINATLI 122 C + +V K S+P RY + ++ A +I Sbjct: 95 KKQCEMINAKLHIVRVRELLGAGIGELKTSRPTCSYCGI--TKRY-IFNKFAYDNGFDVI 151 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180 +T H DD+ + + ++ + + +L ++ +P ++ ++ Sbjct: 152 VTGHNLDDEA-SFIFGNIMNWNTQYLA---KQGPLLPGEGKFVKKVKPLYEVTEREVVAY 207 Query: 181 LLQRNISW 188 L I + Sbjct: 208 ALAVGIDY 215 >gi|261868040|ref|YP_003255962.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413372|gb|ACX82743.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 280 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 39/195 (20%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS LL L ++ + IKF ++V+ H L Sbjct: 50 GDKVMVCLSGGKDSYTLLDILLNLQQN---APIKFRIVAVNLDQKQPGFPEHILPG---- 102 Query: 69 EVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATL 121 + + + +V K P+ + R ++ A + AT Sbjct: 103 -------YLQGIGVGYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATK 155 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSF 180 I H DD L T+++ G L M ++ D I RP C+ +DI + Sbjct: 156 IALGHHRDDMLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKY 210 Query: 181 LLQRNISWCEDPSNT 195 + + P N Sbjct: 211 AIAKAFPII--PCNL 223 >gi|93005608|ref|YP_580045.1| PP-loop [Psychrobacter cryohalolentis K5] gi|122415717|sp|Q1QCP2|TTCA_PSYCK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|92393286|gb|ABE74561.1| PP-loop [Psychrobacter cryohalolentis K5] Length = 381 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 91/283 (32%), Gaps = 31/283 (10%) Query: 8 SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 ++R F +++ ++ V VSGG DS L +L + I F ++V+ + Sbjct: 83 AIRDF--NMIEDGDVVMVCVSGGKDS---YTLLDILLLLKRIAPIHFDIVAVNLDQKQPG 137 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTIN 118 +EV + IAH ++ +A R + AK I Sbjct: 138 YPEEVLPA--YLNEQGIAHYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 195 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 AT I H DD L T ++ A K S + D + RP +DI Sbjct: 196 ATKIALGHHRDDMLATFFLNLFHGGALK----SMPPKLLSDDKQNMLIRPLAYVEEKDII 251 Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 + + P N R + D+ ++++ D + ++ + Sbjct: 252 EYSNLKEFPII--PCNLCGSQT-NLQRAIINDM--------LREWDDAHPQRLASIFKAM 300 Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281 + + L++D L G SL Sbjct: 301 QNVAPSQLADRELFDFETLSLDRDDNERLFEGDNIQAGQIESL 343 >gi|187935286|ref|YP_001884957.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B] gi|187723439|gb|ACD24660.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B] Length = 288 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++++ + + I VA+SGG DS+ L+ L L + I++D Sbjct: 39 KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96 Query: 64 ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114 ++ + C L I ++ + + R + A Sbjct: 97 P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + + H ++D +ET + K M L + NL + RP Sbjct: 150 QELECNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206 Query: 175 EDIRSFLLQRNISW 188 E I+ F+ I+ Sbjct: 207 EYIKKFIKSTGIAP 220 >gi|227486136|ref|ZP_03916452.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172] gi|227235900|gb|EEI85915.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172] Length = 270 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 23/232 (9%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63 I++++ F + + + VA+SGG DS+ L + + G + F L Sbjct: 24 IKAIKEF-KLIEEGDRVGVAISGGKDSLILAKLIEEL---HKHGPVDFDVEY----LSMD 75 Query: 64 -ETAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116 ++ + + + L+I + + R + AK Sbjct: 76 PGYDEENLELLKKNLAYLQIPGKIYDSRVFDISETLADGGNPCYLCARMRRGFLYAKAKE 135 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H +D +ET+ + K M ++ + RP R ED Sbjct: 136 LGCNKLALGHHLNDVIETIMINVLYAGNYKTMKPKLTAQNF---DDMLLIRPLYYLREED 192 Query: 177 IRSFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225 I + + + + + + R +V+ + D+ ++M + Sbjct: 193 IIRWRDFAELKALDCACTVTKSSESHTRKKVKDLIADLKKDNPNVEMSILRS 244 >gi|325475681|gb|EGC78857.1| hypothetical protein HMPREF9353_00109 [Treponema denticola F0402] Length = 235 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 24/241 (9%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ F + + IL+A SGG DS L S+ R + + A+ + Sbjct: 8 RTIDRAVFDYKMIEEGDRILLAASGGKDSTALAEYF-SMRLKRPSPRFEVHAMHI----- 61 Query: 64 ETAKDEV-----RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHA 114 A D + I ++ + R +++ A Sbjct: 62 --ATDVAPPLSPDLIKMF-ENWNIPLTIKTVSVLGRLKPNEKMNCWWCSTQRRTELNKFA 118 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCR 173 I H DD LET+ M EKG+ LS M + ++ + + RP Sbjct: 119 MEEGFNKIALGHHLDDILETLLMN----SLEKGI-LSTMPPVLKFEKYPVTMIRPLCLAD 173 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 I Q N + R R + + + LK+ F L+ + Sbjct: 174 LPMIIRHSEQAGYICSTCTCNFQENSARKTARSRLDRLTGGSYKLKINLFNSLKNILPEY 233 Query: 234 V 234 + Sbjct: 234 L 234 >gi|327398487|ref|YP_004339356.1| PP-loop domain-containing protein [Hippea maritima DSM 10411] gi|327181116|gb|AEA33297.1| PP-loop domain protein [Hippea maritima DSM 10411] Length = 294 Score = 78.0 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 25/194 (12%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V+ F + IL+AVSGG DSM L AL + +A+ VD + + Sbjct: 36 KAVKQF-KMFDKEDKILIAVSGGKDSMSLWSALLEL-------GYNTTALFVDLGIGGFS 87 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK----------PQTGLMAAAREARYALISEHAKT 116 + V R VV K + R RY + Sbjct: 88 ELARSKVEAFSDRFDAPLRVVELKKEGIPIPEVVKKIKRPACAVCGRIKRY-YFNTEGLK 146 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRR 174 ++ T H DD ET R + M +L + +PF R Sbjct: 147 GGFDVLATGHNLDD--ETS--RLFSNVLHWKMEYLEDQSPVLPSEEGLLKKVKPFFRLTE 202 Query: 175 EDIRSFLLQRNISW 188 +I ++ +NI + Sbjct: 203 FEIAAYAFFKNIDY 216 >gi|188993699|ref|YP_001905709.1| putative PP-loop family ATPase [Xanthomonas campestris pv. campestris str. B100] gi|167735459|emb|CAP53674.1| putative PP-loop family ATPase [Xanthomonas campestris pv. campestris] Length = 439 Score = 78.0 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 19/188 (10%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + ++V +SGG DS LL L + A+++D + +V Sbjct: 185 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 240 Query: 76 VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 ++ + V + + + R + +A+ T I H Sbjct: 241 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 300 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187 DD + T +M L+ M + D + RP R DI ++ R+ Sbjct: 301 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARHFP 355 Query: 188 WCEDPSNT 195 P N Sbjct: 356 II--PCNL 361 >gi|110638235|ref|YP_678443.1| ATPase [Cytophaga hutchinsonii ATCC 33406] gi|123163527|sp|Q11U13|TTCA_CYTH3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|110280916|gb|ABG59102.1| conserved hypothetical protein; possible ATPase [Cytophaga hutchinsonii ATCC 33406] Length = 285 Score = 78.0 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 21/197 (10%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E+V F L+ P I+V +SGG DS +L + R + A+++D ++ Sbjct: 29 EAVEEF--DLIEPGDKIMVCLSGGKDSYTMLDMFIHAQTVRK--NFEIIAVNLD---QKQ 81 Query: 66 AKDEVRYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTIN 118 + + + L + +V + + + R + A+ + Sbjct: 82 PDYPEHILPEYLTHLGVNFKIVEKDTYSIVIDKTPAGKTMCSLCSRLRRGSLYATAEELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 T I H +D LET ++ G + D + RP + C+ +I Sbjct: 142 VTKIALGHHREDVLETFFLNLF----FSGKMEAMPAKYRTDDGKHVVIRPLVYCKENEIA 197 Query: 179 SFLLQRNISWCEDPSNT 195 + + + P N Sbjct: 198 EYSIYKKFPII--PCNL 212 >gi|284161871|ref|YP_003400494.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] gi|284011868|gb|ADB57821.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631] Length = 290 Score = 78.0 bits (191), Expect = 3e-12, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 27/240 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 L ILV VSGG DS + AL+ + +D + +K+ ++ V + Sbjct: 43 LKSSEKILVCVSGGKDSTAMAYALNEL-------DYNIELFHIDLGIGNYSKESLKAVEE 95 Query: 76 VCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + +VV ++ + +A + +++ A+ +I TAHT + Sbjct: 96 LAQTLNLNLNVVKLEDYGFTIDDVESKKVCSACGIVKRYIMNRFARERGFDVIATAHTCE 155 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW- 188 D + E LS D +D + ++P ++ + +L N+ + Sbjct: 156 DIILFFIKNVLSGNVEYISKLSPRIDG--FDKLVAKAKPLFERTEKENATLVLTLNLPFT 213 Query: 189 -CEDPS--NT---DDRFE-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 E P N + +E R + FVR I A +K ++++ K+ V+ Sbjct: 214 PMECPHAPNDIWKEIIYEIEAKRRGFKQNFVRGIVKLAKSVKAEEWEVKHCKICGEVSNF 273 >gi|332024574|gb|EGI64772.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acromyrmex echinatior] Length = 1426 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 25/207 (12%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAIS 57 M+ +E+++ F + +LV +S G DS+ LL LH I + A + Sbjct: 1116 MWKPSVEAMQEF-DMIRDNDKVLVCLSAIGKDSLSLLHTLHQYRFYVRSKGIDFEIGAAT 1174 Query: 58 VDHCLRETAKDEVRYVSDVCSRLRIAHS------------VVSWKNSKPQTGLMAAAREA 105 +D T+ + + L I + V + ++ +G + ++ Sbjct: 1175 ID-----TSGSDPMELMSYLKTLEIPYFYKEQVTDSNSVNVDNPLDASIASGTCSFCDKS 1229 Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 + AK ++ DD E+ + K + + +L + Sbjct: 1230 VRTQLYSLAKRNGYNVLALGQHLDDLAESFLISVLHGGVLK----TMKAHYYIRREDLRV 1285 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDP 192 RPF+ R + +R F + + D Sbjct: 1286 IRPFIYVREKALRQFTESKKLPISRDS 1312 >gi|303326287|ref|ZP_07356730.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] gi|302864203|gb|EFL87134.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] Length = 301 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 24/192 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE + F R ILVA+SGG DS+ L++ L + + + +D + + Sbjct: 38 IEGQKLFTRD----ERILVALSGGKDSLALMLELAR-------QEYNVTGLHIDLAIPGS 86 Query: 66 AKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKT 116 + V C++ + V + + + +A + + ++ A Sbjct: 87 SAAARGVVERFCAKHGLKLLVKDMAAEGLPIPAVKERLHRPICSACGKIKRHFFNKVALD 146 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRE 175 + T H DD+ ++ + R LS + + +P R Sbjct: 147 EGFDALATGHNLDDEAARLFSNTLR---WDTAYLSDQGPLLPGEHGFARKVKPLWRLTEF 203 Query: 176 DIRSFLLQRNIS 187 + ++ I Sbjct: 204 ETANYAFLMGIE 215 >gi|320537144|ref|ZP_08037116.1| PP-loop family protein [Treponema phagedenis F0421] gi|320146017|gb|EFW37661.1| PP-loop family protein [Treponema phagedenis F0421] Length = 235 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +F + ++V + + + IL+ SGG DS L + L R + SA+ + Sbjct: 6 LFRTIDKAVSDY-QMIKDGDRILIGASGGKDSTALAEYFAARLKRRD-AQFTVSAMHI-- 61 Query: 61 CLRETAKDEV-----RYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALIS 111 ++ + + ++ R I + + + + R ++ Sbjct: 62 ------ATDIGSPFNQNLVELFERWGIPLIIKTVSVLGRLKEGHRMNCWWCSSQRRTELN 115 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDL-NLWISRPF 169 A I H DD LET+ M + G G LS M + ++ + + RP Sbjct: 116 NFALKNGFNKIALGHHLDDILETLLMNAL------GKGILSTMPPVLQFEKYPITMIRPL 169 Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 I +N N R R + + + LK+K F Sbjct: 170 CLADIPMIVRHAQMQNYFSSTCTCNYQSNSTRKEARSRLDALTGGSYELKLKLF 223 >gi|19704203|ref|NP_603765.1| PP family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328581|ref|ZP_06871098.1| PP-loop family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714425|gb|AAL95064.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154180|gb|EFG94981.1| PP-loop family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 277 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 20/191 (10%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 + I++++ F L+ I V VSGG DS+ L + D+S + IS++ Sbjct: 37 NFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDKS-KNFEVKFISMNPGF 93 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115 A D ++ ++ + I + + + Q A + R ++ + + Sbjct: 94 --EAIDIDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPNNPCFLCAKMRRGVLYKKVE 148 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175 + + H FDD +ET + G + + + I RP R + Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204 Query: 176 DIRSFLLQRNI 186 DI +F+ +I Sbjct: 205 DIINFMKYNDI 215 >gi|261402621|ref|YP_003246845.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] gi|261369614|gb|ACX72363.1| PP-loop domain protein [Methanocaldococcus vulcanius M7] Length = 342 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 43/242 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRE--TAKDEVRYVSDV 76 I+V +SGG DS+ + LH + R IK A +VD +R + V+ + Sbjct: 81 IIVGLSGGKDSL---LLLHLLEPYRRKYGIKLIAATVDVNIGGIRPWKEDSEGVKLIKHH 137 Query: 77 CSRLRIAH-------------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--- 120 C L I H ++S + + + + L+S+ K I+ Sbjct: 138 CEMLSIPHITLKSELDVVELSEILSKNSRGMEFSPCFSCSVIKRHLLSKLCKEISKRDNL 197 Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISR 167 I H DD +T+ + K M + D I R Sbjct: 198 PYEKVKIAYGHNLDDNSDTILANMFKGERLKFMKPITKFNHSEVDYGTFKIPLEECTIIR 257 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRRFVRDIDLHALYLKMKKFQ 224 P L +DI L + N+S+ +D + + R R VR+ +I L + ++ + Sbjct: 258 PMLPVLEQDIVKSLEECNLSYYKDK--DECPYSRDRGDSVRKRCHEI-LEEVEKEIPNIR 314 Query: 225 DL 226 ++ Sbjct: 315 EM 316 >gi|332290509|ref|YP_004421361.1| C32 tRNA thiolase [Gallibacterium anatis UMN179] gi|330433405|gb|AEC18464.1| C32 tRNA thiolase [Gallibacterium anatis UMN179] Length = 306 Score = 77.6 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 20/241 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 ++V +SGG DS L+ + L + + A+++D + +EV Sbjct: 35 GDRVMVCLSGGKDS-YTLLDILLNLKLNAPVNFEIVAVNLD-QKQPGFPEEVLP--TYLQ 90 Query: 79 RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + + +V K P+ + R ++ A + AT I H DD Sbjct: 91 QLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDM 150 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 LET+++ K S I D + RP CR +DI + + Sbjct: 151 LETLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCREKDIARYAEAKQFPII-- 204 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248 P N +R V+ ++ D F L+ V + + R Sbjct: 205 PCNLCGSQPNLQRQVVKEMLQQWDRQYPGRIETMFSALQNIVPSHLCDAKLFDFKSIQRG 264 Query: 249 I 249 + Sbjct: 265 V 265 >gi|312877002|ref|ZP_07736976.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796233|gb|EFR12588.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 303 Score = 77.6 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +LV +SGG DSM L L S + + ++ + + + + V Sbjct: 42 RMFDKKDKVLVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + V K + + + L ++ A + + Sbjct: 95 ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ + E + + + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPS 193 I + D Sbjct: 214 NKIEFLHDEC 223 >gi|219870570|ref|YP_002474945.1| putative ATPase [Haemophilus parasuis SH0165] gi|219690774|gb|ACL31997.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Haemophilus parasuis SH0165] Length = 295 Score = 77.6 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ R I F ++V+ L + +V + Sbjct: 22 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVN--LDQKQSGFPEHVLPEYL 76 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 77 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 136 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +DI + + + Sbjct: 137 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 191 Query: 190 EDPSNT 195 P N Sbjct: 192 --PCNL 195 >gi|256811518|ref|YP_003128887.1| PP-loop domain protein [Methanocaldococcus fervens AG86] gi|256794718|gb|ACV25387.1| PP-loop domain protein [Methanocaldococcus fervens AG86] Length = 335 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 45/243 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEV--RYVSDV 76 I+V +SGG DS+ + LH + R IK A++VD +R +D + + Sbjct: 78 IIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGGVRPWREDTEGVKLIKHH 134 Query: 77 CSRLRIAH-------------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--- 120 C L + H +++ + + + + L+ + AK I Sbjct: 135 CEMLDVPHLLLKNDLDVVELSEILTKNSKGMEFSPCFSCSVIKRHLLGKLAKEIAEKENI 194 Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNL---WISR 167 + H DD +T+ + K M S + D + + L I R Sbjct: 195 PYEKVKLAYGHNLDDNSDTILANLFKGERLKFMRPLTKFKSNVVDYQSFKIPLEECTIIR 254 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVR---VRRFVRDIDLHALYLKMKKF 223 P L +DI L + I + +D D + R R +RR +I L +L +++ Sbjct: 255 PMLPVLEKDIVKALEECGIEYYKDK---DVCPYSRDRGDSIRRRCHEI-LESLEVEIPNI 310 Query: 224 QDL 226 +++ Sbjct: 311 REM 313 >gi|323342529|ref|ZP_08082761.1| PP-loop family protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463641|gb|EFY08835.1| PP-loop family protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 276 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 10/178 (5%) Query: 15 SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RY 72 L+ P I V +SGG DSM L+ +L S I +D E + + + Sbjct: 28 QLIQPNDCIGVCISGGKDSM-LMALCFKILVQHSEVPFTVKYIVMDPGYNEVNRQRIYQN 86 Query: 73 VSDVCSRLRIAHSVVSW--KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 ++ L I + R + + A+ + I H +DD Sbjct: 87 AHEL--ELDIEMFDAKIFDYVDHIEKSPCYLCARMRRGHLYQFAEQLGCNKIALGHHYDD 144 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +ET M + G + + T D + + RP R I ++ + + Sbjct: 145 VIETTVMNLFYG-GQFGTMMPRLKSTSHPD--IELIRPLYLVRESSIIKWVNCTGLEF 199 >gi|317484593|ref|ZP_07943497.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924133|gb|EFV45315.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 303 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 28/195 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE+ + F ILVA+SGG DS+ L++ + S + + +D + Sbjct: 39 IETGKLFTHE----DRILVALSGGKDSLSLML-------ELSRQGYDVTGLHIDLGI-PG 86 Query: 66 AKDEVRYV-SDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAK 115 + + VR V C + V + + + + +A + + ++ A Sbjct: 87 SSEIVRGVIERFCGKHGFKLIVKEMAKEGLAIPLVKQRLKRPICSACGKIKRHYFNKTAL 146 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCR 173 T + T H DD++ R + +G L + +PF R Sbjct: 147 EEGFTALATGHNLDDEI----ARLFSNTLRWDVGYLSDQGPRLDGEDGFARKVKPFWRLT 202 Query: 174 REDIRSFLLQRNISW 188 + ++ I Sbjct: 203 EFETATYAFLEEIEH 217 >gi|110798619|ref|YP_696182.1| PP-loop family protein [Clostridium perfringens ATCC 13124] gi|110802622|ref|YP_698796.1| PP-loop family protein [Clostridium perfringens SM101] gi|168208039|ref|ZP_02634044.1| PP-loop family protein [Clostridium perfringens E str. JGS1987] gi|168210083|ref|ZP_02635708.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626] gi|168213775|ref|ZP_02639400.1| PP-loop family protein [Clostridium perfringens CPE str. F4969] gi|168216881|ref|ZP_02642506.1| PP-loop family protein [Clostridium perfringens NCTC 8239] gi|169347271|ref|ZP_02866210.1| PP-loop family protein [Clostridium perfringens C str. JGS1495] gi|182624682|ref|ZP_02952463.1| PP-loop family protein [Clostridium perfringens D str. JGS1721] gi|110673266|gb|ABG82253.1| PP-loop family protein [Clostridium perfringens ATCC 13124] gi|110683123|gb|ABG86493.1| PP-loop family protein [Clostridium perfringens SM101] gi|169296667|gb|EDS78798.1| PP-loop family protein [Clostridium perfringens C str. JGS1495] gi|170660672|gb|EDT13355.1| PP-loop family protein [Clostridium perfringens E str. JGS1987] gi|170711838|gb|EDT24020.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626] gi|170714722|gb|EDT26904.1| PP-loop family protein [Clostridium perfringens CPE str. F4969] gi|177910079|gb|EDT72473.1| PP-loop family protein [Clostridium perfringens D str. JGS1721] gi|182381048|gb|EDT78527.1| PP-loop family protein [Clostridium perfringens NCTC 8239] Length = 345 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 25/194 (12%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---- 59 I++++ + + + I +A+SGG DS LI + G+I F + + Sbjct: 39 KFIKAIKDY-KLVEEGDKIAIAISGGKDS---LIMAKLFQELKKHGQINFELVFLAMDPG 94 Query: 60 -H-CLRETAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISE 112 H +RE + D C L I + + + R + Sbjct: 95 YHPQIRE-------LLEDNCKYLDIPVHIYDSGIFQVVDKIAKDYPCYMCARMRRGSLYG 147 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 AK + + H F+D +ET + L + + + RP Sbjct: 148 KAKELGCNKLALGHHFNDVIETTMLNVL-YAGNFKTMLPKLKAANF--DGIELIRPLYYI 204 Query: 173 RREDIRSFLLQRNI 186 + I+ ++ + I Sbjct: 205 EEKYIKRWIQRAGI 218 >gi|220905538|ref|YP_002480850.1| PP-loop domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869837|gb|ACL50172.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 303 Score = 77.3 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 IE + F R +LVA+SGG DS+ L++ + S + + +D + + Sbjct: 38 IEGQKLFTRD----ERVLVALSGGKDSLALML-------ELSRQGYNVTGLHIDLGIPVS 86 Query: 66 AKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKT 116 + V C++ + + + ++ + +A + + ++ A Sbjct: 87 SAAARGVVERFCAKHGLKLMIREMAAEGLAIPAVKARLNRPVCSACGKIKRHFFNKVALD 146 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRE 175 + T H DD++ ++ + R LS + + +P R Sbjct: 147 EGFDALATGHNLDDEVARLFSNTLR---WDTAYLSDQGPRLDSEHGFSRKVKPLWRLTEF 203 Query: 176 DIRSFLLQRNIS 187 + ++ I Sbjct: 204 ETANYAFLMGIE 215 >gi|254519485|ref|ZP_05131541.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913234|gb|EEH98435.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 288 Score = 77.3 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 +++V+ + +LV I VA+SGG DS+ L+ L + I++D Sbjct: 39 KFVKAVKDY--NLVEEGDKIAVAISGGKDSL-LMAKCFQELKKHGQMNFELEFIAMDPGY 95 Query: 63 RETAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 K + + C+ L I + + + R + AK + Sbjct: 96 HPQIK---ELLIENCNHLGIPVHIYEGKIFEVVDKMARDYPCYLCARMRRGSLYSKAKEL 152 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + H ++D +ET + L + + + RP E I Sbjct: 153 GCNKLALGHHYNDVIETTLLNVL-YAGNFKTMLPKLKAANF--EGMELVRPLYYVEEEYI 209 Query: 178 RSFLLQRNI 186 + F I Sbjct: 210 KRFTNNAGI 218 >gi|124505367|ref|XP_001351425.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] gi|6562748|emb|CAB62887.1| conserved Plasmodium protein, unknown function [Plasmodium falciparum 3D7] Length = 1245 Score = 77.3 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 4/148 (2%) Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 K +++ H +D ETV ++ R K L G+ + Y N + RPF+ Sbjct: 515 YCILKKKIKSIVFLGHHQNDNNETVLLQFFRGVFLK--NLRGIK-FLTYYKNCLLYRPFI 571 Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + + + ++ N +W D SN + R +R V H L K K ++ + Sbjct: 572 KLNKLHLYRYMQLINKTWNFDSSNNNMSISRNFIRNVVIPNITHMLKDKSYKNRENH-NI 630 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILN 258 + + K++ + + L+ Sbjct: 631 DKEINEKNDKHMLDDNVCVDYHDETPLH 658 >gi|121602698|ref|YP_989113.1| PP-loop family protein [Bartonella bacilliformis KC583] gi|205830555|sp|A1UT10|TTCA_BARBK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|120614875|gb|ABM45476.1| PP-loop family protein [Bartonella bacilliformis KC583] Length = 278 Score = 77.3 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 47/235 (20%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAIS 57 + + +++ F L LVA+SGG DS AL L R ++ A + Sbjct: 38 LLRNMRQAIDDF-SMLSSGEKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACN 92 Query: 58 VD--------HCLRETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAA 101 +D H L D +I H + V+ K ++ QT + Sbjct: 93 LDQGQPGFPKHILP-----------DFLKSYKIPHRIEYQDTYSIVTGKLAQTQT-YCSL 140 Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161 R + A+ + ++ H DD LET +M L+ M ++ D Sbjct: 141 CSRLRRGHLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDE 195 Query: 162 N-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212 L++ RP + ED+ F P N D +R ++ + DI+ Sbjct: 196 GDLFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKVMLNDIE 248 >gi|319404220|emb|CBI77813.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 278 Score = 77.3 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 74/240 (30%), Gaps = 44/240 (18%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L I L L+A+SGG DS AL L R + A ++ Sbjct: 34 LLRHIRQALDDFAMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 89 Query: 59 D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103 D H L D + +I + + + Sbjct: 90 DQGQPGFPKHILP-----------DFLNYYQIPFRIEYQDTYSIVTDKLAQTQTYCSLCS 138 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LN 162 R + A+ + ++ H DD LET M L+ M ++ D + Sbjct: 139 RLRRGHLYRIAREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDERD 193 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219 L++ RP + ED+ F P N D +R +++ + DI+ K Sbjct: 194 LFVLRPLIYAAEEDMEKFSQAMQFPII--PCNFCGSQDGLQRNAMKKMLNDIERKMPGRK 251 >gi|313109042|ref|ZP_07795015.1| hypothetical protein PA39016_001660022 [Pseudomonas aeruginosa 39016] gi|310881517|gb|EFQ40111.1| hypothetical protein PA39016_001660022 [Pseudomonas aeruginosa 39016] Length = 281 Score = 77.3 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 65/231 (28%), Gaps = 26/231 (11%) Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228 L R ++ ++ + W EDPSN D RF R +RR + + Sbjct: 1 MLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWPQAVAGMARCAA 60 Query: 229 KVNNA---VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285 + A +A L L + D L++ L LR +A + Sbjct: 61 HLREAEDLLAELAAIDLRACRQPSELDWPDWLDLPRIAL-EPLRRLSAARQRNLLRAWLG 119 Query: 286 SMERV-----------MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334 + R+ + + + R A +W LP Sbjct: 120 QLTRLPDSDHWAGWESLRDAGDDADPIWRLESGELRRGAGRIWW------LPADWRAAAG 173 Query: 335 TTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSGIPPIIAQRALSSM 380 VW+ L + L ++ R G +A R + Sbjct: 174 PFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYRRGGEVLALAGRGRRDL 224 >gi|312792431|ref|YP_004025354.1| PP-loop domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179571|gb|ADQ39741.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 303 Score = 76.9 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R +LV +SGG DSM L L S + + ++ + + + + V Sbjct: 42 RMFDKEDKVLVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + V K + + + L ++ A + + Sbjct: 95 ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ + E + + + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPS 193 I + D Sbjct: 214 NKIEFLHDEC 223 >gi|289193222|ref|YP_003459163.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22] gi|288939672|gb|ADC70427.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22] Length = 336 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 50/226 (22%) Query: 8 SVRFFV--RSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HC 61 V F+ ++ P ++ V +SGG DS+ + LH + R IK A++VD Sbjct: 63 KVGRFINKHKIIAPRDVVIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGG 119 Query: 62 LRETAKD--EVRYVSDVCSRLRIAH-------------SVVSWKNSKPQTGLMAAAREAR 106 +R ++D V+ + C L + H +++ + + + + Sbjct: 120 IRPWSEDKEGVKLIKHHCEMLDVPHLILKNDLDVVELSEILTKNSKGMEFSPCFSCSVIK 179 Query: 107 YALISEHAKTINAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 L+ + AK I + H DD +T+ + L M Sbjct: 180 RHLLGKLAKEIAEEENIPYEKVKLAYGHNLDDNSDTILANIFKGER-----LKFMRPLTR 234 Query: 159 YDLN-------------LWISRPFLRCRREDIRSFLLQRNISWCED 191 + N I RP L DI L + I + +D Sbjct: 235 FKYNEVDYQSFKIPLEECIIIRPMLPVLERDIIKALEECGIEYYKD 280 >gi|49475605|ref|YP_033646.1| hypothetical protein BH08400 [Bartonella henselae str. Houston-1] gi|81648390|sp|Q6G5E1|TTCA_BARHE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|49238412|emb|CAF27639.1| hypothetical protein BH08400 [Bartonella henselae str. Houston-1] Length = 282 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 76/240 (31%), Gaps = 44/240 (18%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L I L LVA+SGG DS AL L R ++ A ++ Sbjct: 38 LLRHIRQAFDDFSMLSSGKKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACNL 93 Query: 59 D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103 D H L D + +I H + + + Sbjct: 94 DQGQPGFPKHILP-----------DFLNSYQIPHRIEYQDTYSIVTDKLVHTQTYCSLCS 142 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162 R + A+ + ++ H DD LET +M L+ M ++ D Sbjct: 143 RLRRGNLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGD 197 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219 L++ RP + ED+ F P N D +R ++ ++DI+ K Sbjct: 198 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKDIERKMPGRK 255 >gi|222528237|ref|YP_002572119.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222455084|gb|ACM59346.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 301 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 73/251 (29%), Gaps = 21/251 (8%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ILV +SGG DSM L L S + + ++ + + + V Sbjct: 42 KMFDKKDKILVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGHYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + V K + + + L ++ A + + Sbjct: 95 ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ + E + + + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243 I + D R + + V + ++F + + Y Sbjct: 214 NKIEFLHDECPH-AIGARSILYKEVLNRLEEESPGTKQRF--ITSFLEKGRRHFQDVYEK 270 Query: 244 VHMRSIIAISQ 254 V ++ I+ Q Sbjct: 271 VELKECISCGQ 281 >gi|108773397|ref|YP_635915.1| hypothetical protein RF62 [Helicosporidium sp. ex Simulium jonesii] gi|122197346|sp|Q2EEX9|TILS_HELSJ RecName: Full=tRNA(Ile)-lysidine synthase, plastid; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|87242972|gb|ABD33964.1| tRNA(Ile)-lysidine synthase [Helicosporidium sp. ex Simulium jonesi] Length = 280 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 57/265 (21%) Query: 1 MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 M + I S +++L+ ++L S G DS LL L ++S+++ KIK Sbjct: 1 MLKNIIYSYITQLKNLLSKKLNVLCTFSAGQDSFFLLYCLIHIISNKN-NKIKLQ--HNH 57 Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYA-LISEHAKT 116 H L+ + V S +I + + + AR+ RY + Sbjct: 58 HFLQSSNILSFWQCIKVASIFKIPLVINLLEINLANKDFMTENEARKWRYDSFLRNSLFQ 117 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL-SGMCDTILY---------------- 159 I HT D LET + R+ + + I Y Sbjct: 118 NEKPSIFIGHTGSDLLETFFWHFLRNSIIDYQLIKKKLLWNIPYYISNFSSVGYKNSSKV 177 Query: 160 ---------------DLNLWISRPFLRCRREDIRS----------------FLLQRNI-- 186 + NL +++ ++D+ FL ++N+ Sbjct: 178 KIKLTNKKKKINCLINHNLMLNKAKKSFLKKDLTQLVLITRPLVNLHRQDIFLFRKNLKL 237 Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI 211 D SN ++ + R R+R + I Sbjct: 238 PVITDKSNDNNYYYRNRIRNILFPI 262 >gi|225848863|ref|YP_002729027.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225644597|gb|ACN99647.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 303 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 91/243 (37%), Gaps = 28/243 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F + +E + ILVAVSGG DS+ L AL ++ I Sbjct: 31 FDNRVEKTIKEFKMFKKEDKILVAVSGGKDSLSLWKALTNLGYQADGFYINL-------G 83 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYAL 109 + E ++ + + ++ +S K +S+P + RY Sbjct: 84 IGEYSEKSEKLATAFSEKIGRPLYKISLKQEIMPIPEIKKHDSRPTCSVCGT--VKRY-Y 140 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167 +++ AK +I T H DD+ V + +++ + + +L + + +I + Sbjct: 141 MNKFAKDNGYKIIATGHNLDDEA-AVLFSNTLNWSVEYL---KRQYPVLPEEDGFIRKVK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P + ++ + + I + E+ + + + F+ ++ + K++ + + Sbjct: 197 PLCKISEKESAMYAILSGIEYIEEECPFSEGATSIDYKIFLSQLEEKSPGTKLRFYSEFL 256 Query: 228 VKV 230 K+ Sbjct: 257 RKM 259 >gi|323143988|ref|ZP_08078642.1| PP-loop family protein [Succinatimonas hippei YIT 12066] gi|322416237|gb|EFY06917.1| PP-loop family protein [Succinatimonas hippei YIT 12066] Length = 290 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 13/166 (7%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76 ++V +SGG DS +L L S+ F + +D T + V ++ V Sbjct: 56 PDDKVMVCISGGKDSYAMLDLLLSLKRSAPFP-FSLIPVHLDPGFPGTPEGVVEGHLQKV 114 Query: 77 CSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 I +S + + + + + R + A+ + + H DD L Sbjct: 115 GLPYHIIKRPVFEISKEKLQGKKTMCSICSRMRRGFLYGFAREMGFNKVALGHHRDDILA 174 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177 T ++ G+ IL D L + RP CR D+ Sbjct: 175 TYFLNLF------YSGIMKTMPPILRTDDDTLTLIRPLAYCRERDL 214 >gi|315927396|gb|EFV06734.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 200 Score = 76.9 bits (188), Expect = 6e-12, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 15/151 (9%) Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R + C+ N + RP L +++I SFL +++I + D SN + Sbjct: 1 MQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 57 Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256 +++ R +R+ + + + +K+ + + L ++ I Q + Sbjct: 58 EKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDFENIKEIQGL 107 Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287 L L+ + + G +S + + Sbjct: 108 LICPKNE--SLIARAVKMKGLLLSTAQRKEL 136 >gi|312128625|ref|YP_003993499.1| PP-loop domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311778644|gb|ADQ08130.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 303 Score = 76.5 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ILV +SGG DSM L L S + + ++ + + + + V Sbjct: 42 KMFDKKDKILVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + V K + + + L ++ A + + Sbjct: 95 ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ + E + + + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPS 193 I + D Sbjct: 214 NKIEFLHDEC 223 >gi|240850638|ref|YP_002972038.1| putative PP-loop ATPase [Bartonella grahamii as4aup] gi|240267761|gb|ACS51349.1| putative PP-loop ATPase [Bartonella grahamii as4aup] Length = 291 Score = 76.5 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 44/240 (18%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L + L LVA+SGG DS AL L R ++ A ++ Sbjct: 48 LLRHMRQALDDFSMLSTGKKWLVALSGGKDS----YGLLALLLDLKWRGLLSVEILACNL 103 Query: 59 D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103 D H L D S +I + + + + Sbjct: 104 DQGQPGFPKHILP-----------DFLSSYKIPYRIEYQDTYSIVTDKLAESQTYCSLCS 152 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162 R + A+ + ++ H DD LET +M L+ M + D Sbjct: 153 RLRRGNLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLKNDEGD 207 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219 L++ RP + ED+ F P N D +R ++ +++I+ K Sbjct: 208 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKNIERQMPGRK 265 >gi|121608434|ref|YP_996241.1| PP-loop domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|205830636|sp|A1WHW6|TTCA_VEREI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|121553074|gb|ABM57223.1| PP-loop domain protein [Verminephrobacter eiseniae EF01-2] Length = 316 Score = 76.5 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 17/185 (9%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + ++V +SGG DS LL L + + R+ A+++D + + Sbjct: 48 FHMIEAGDKVMVCMSGGKDSYTLLDILLKLRA-RAPIAFDLVAVNLD-QKQPG---FPAH 102 Query: 73 VS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMT 124 V + + + + + + R ++ A + T I Sbjct: 103 VLPGYLASAGVPYHIETEDTYGIVKRLIPEGKTTCSLCSRLRRGILYRVASELGCTKIAL 162 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H DD L+T+ + K S + D + RP +D + QR Sbjct: 163 GHHRDDILQTLLLNMFFGGKMK----SMPPKLVSDDGQHVVIRPLAYVAEKDTARWAAQR 218 Query: 185 NISWC 189 N Sbjct: 219 NFPII 223 >gi|332678208|gb|AEE87337.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida Fx1] Length = 267 Score = 76.5 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFYIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + KGM + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKGMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|114704638|ref|ZP_01437546.1| hypothetical protein FP2506_06876 [Fulvimarina pelagi HTCC2506] gi|114539423|gb|EAU42543.1| hypothetical protein FP2506_06876 [Fulvimarina pelagi HTCC2506] Length = 297 Score = 76.1 bits (186), Expect = 9e-12, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 19/175 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 A LVA+SGG DS L+AL L R + A ++D + ++V D Sbjct: 60 QGARWLVAISGGKDS-YGLLALLLDLKWRGLLPVDLLACNLD-QGQPN---FPKHVLPDW 114 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 ++ IAH + + + R + A+ ++ H D Sbjct: 115 LAKNGIAHRIEYRDTYSIVTDKLPDNATYCSLCSRLRRGHLYRIAREEGCEALVLGHHRD 174 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQ 183 D LET ++ LS M +L Y+ +L + RP + ED+ F Sbjct: 175 DCLETFFLNLFHGGK-----LSAMPAKLLNYEGDLLVLRPLINSAEEDLARFAEA 224 >gi|257465651|ref|ZP_05630022.1| MesJ protein [Actinobacillus minor 202] gi|257451311|gb|EEV25354.1| MesJ protein [Actinobacillus minor 202] Length = 310 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ + I F ++V+ L + +V + Sbjct: 39 GDKVMVCLSGGKDS---YTLLDILLNLKLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K M M D D + RP C+ +DI + + + Sbjct: 154 MLETLFLNMFYGGKLKSMPPKLMSD----DGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|240949554|ref|ZP_04753894.1| hypothetical protein AM305_11435 [Actinobacillus minor NM305] gi|240296127|gb|EER46788.1| hypothetical protein AM305_11435 [Actinobacillus minor NM305] Length = 310 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ + I F ++V+ L + +V + Sbjct: 39 GDKVMVCLSGGKDS---YTLLDILLNLKLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 93 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 94 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 LET+++ K M M D D + RP C+ +DI + + + Sbjct: 154 MLETLFLNMFYGGKLKSMPPKLMSD----DGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 208 Query: 191 DPSNT 195 P N Sbjct: 209 -PCNL 212 >gi|307546134|ref|YP_003898613.1| C32 tRNA thiolase [Halomonas elongata DSM 2581] gi|307218158|emb|CBV43428.1| C32 tRNA thiolase [Halomonas elongata DSM 2581] Length = 298 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ + A+++D + +V + Sbjct: 55 GDKVMVCLSGGKDSYTMLEILRNLQRNAPV-DFSLVAVNLD-QKQPG---FPEHVLPEYL 109 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + ++ + R + +A+ I AT I H +D Sbjct: 110 EGIGVDYHILERDTYSVVKEKTPEGKTTCSLCSRLRRGSLYGYAEEIGATKIALGHHRED 169 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M +L D I RP CR DI F Sbjct: 170 ILETLFLNMF-----FGGSLKSMPPKLLSDDGKNIVIRPLAYCREADIAEFSRCMEFPII 224 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249 P N + R+ V+++ + + + V N + + Sbjct: 225 --PCNLCGS-QPNLQRQVVKEMLADWEARHPGRLESMFKAVTNVAPSQLADRELFDFAGL 281 >gi|156088345|ref|XP_001611579.1| hypothetical protein [Babesia bovis T2Bo] gi|156088349|ref|XP_001611581.1| hypothetical protein [Babesia bovis T2Bo] gi|154798833|gb|EDO08011.1| conserved hypothetical protein [Babesia bovis] gi|154798835|gb|EDO08013.1| conserved hypothetical protein [Babesia bovis] Length = 253 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 16/134 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD------------- 68 + + VSGG DS L L ++ +R K ++ D ++ D Sbjct: 51 VCIGVSGGKDSSVLAHVLATL-KERYHRKWTLYLLAADEGIKGYRDDSLGVVMGMSNPNY 109 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + R + + Q R ++ A+ + A + T H Sbjct: 110 DGLKILNFKERFG--FDMDEVVSLIGQKNNCTVCGTFRRQILEIGARMLGANKLCTGHNI 167 Query: 129 DDQLETVYMRSQRD 142 DD ETV + R+ Sbjct: 168 DDNAETVLLNICRN 181 >gi|156088341|ref|XP_001611577.1| PP-loop family protein [Babesia bovis] gi|154798831|gb|EDO08009.1| PP-loop family protein [Babesia bovis] Length = 407 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 16/134 (11%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD------------- 68 + + VSGG DS L L ++ +R K ++ D ++ D Sbjct: 51 VCIGVSGGKDSSVLAHVLATL-KERYHRKWTLYLLAADEGIKGYRDDSLGVVMGMSNPNY 109 Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128 + + + R + + Q R ++ A+ + A + T H Sbjct: 110 DGLKILNFKERFG--FDMDEVVSLIGQKNNCTVCGTFRRQILEIGARMLGANKLCTGHNI 167 Query: 129 DDQLETVYMRSQRD 142 DD ETV + R+ Sbjct: 168 DDNAETVLLNICRN 181 >gi|302348148|ref|YP_003815786.1| hypothetical protein ASAC_0348 [Acidilobus saccharovorans 345-15] gi|302328560|gb|ADL18755.1| hypothetical protein ASAC_0348 [Acidilobus saccharovorans 345-15] Length = 329 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 21/231 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 IL+A+SGG D LL + + + I H + ++ RY+ Sbjct: 53 ILLALSGGKDGYTLLDVMSRIYKSDRLIGLNI--IEGIHGYNKE--EDARYLVMTAKEFG 108 Query: 82 IAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTINATLIMTAH 126 I V S K + AR +++ +A+ + A + TAH Sbjct: 109 IDVIVTSIKEYTGLSVDEIMYKAKERSTRVSACTYCGIARRRIMNYYARELGANKLATAH 168 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SFLLQR 184 DD+ +T + R E + + + + + + +P + + +FL Sbjct: 169 NLDDESQTAVINILRGDFESLLRQHPLAELVRDPMLVRRIKPLRKIYEWETATFTFLKGY 228 Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235 +I E P R +VRR + + ++ + L + A Sbjct: 229 HIQETECPYIYQLPTLRAKVRRELYRYESEHPGALLRFIESLDRMLEPIAA 279 >gi|311740141|ref|ZP_07713973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium pseudogenitalium ATCC 33035] gi|311304696|gb|EFQ80767.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) [Corynebacterium pseudogenitalium ATCC 33035] Length = 219 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AHT DDQ ET+ + + R ++GM + + + RP L RR D Sbjct: 28 VAVAHTADDQAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGAC 80 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD 210 + +S DP N D F RV +RR V Sbjct: 81 AELGLSAWRDPQNADTNFRRVALRREVIP 109 >gi|114797440|ref|YP_761448.1| C32 tRNA thiolase [Hyphomonas neptunium ATCC 15444] gi|123027763|sp|Q0BYJ5|TTCA_HYPNA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|114737614|gb|ABI75739.1| PP-loop family protein [Hyphomonas neptunium ATCC 15444] Length = 295 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDE 69 LV +SGG DS GLL L + + A ++D H L E Sbjct: 54 PHPKWLVCLSGGKDSYGLLAVLLDLQWQ-GALPVDLIACNLDQGQPGFPKHILPE----- 107 Query: 70 VRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLI 122 ++ + H +++ + R ++ A+ I Sbjct: 108 ------WLTQNGVTHKIITEDTYSIVTDKVPEGRTYCSMCSRLRRGILYRVAREEGCEAI 161 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 + H DD L T M G + + D ++ + RP + +D+ F Sbjct: 162 VLGHHRDDALATFMMNLIHG----GRLAAMPPKLLNDDGDVQVFRPLITAAEDDLAKFAE 217 Query: 183 QRNISWCEDPSNT 195 P N Sbjct: 218 AMEFPII--PCNL 228 >gi|167856039|ref|ZP_02478783.1| hypothetical protein HPS_10445 [Haemophilus parasuis 29755] gi|167852834|gb|EDS24104.1| hypothetical protein HPS_10445 [Haemophilus parasuis 29755] Length = 316 Score = 76.1 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ R I F ++V+ L + +V + Sbjct: 43 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 97 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 98 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 157 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +DI + + + Sbjct: 158 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 212 Query: 190 EDPSNT 195 P N Sbjct: 213 --PCNL 216 >gi|289577704|ref|YP_003476331.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] gi|289527417|gb|ADD01769.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9] Length = 300 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 33/250 (13%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L I R F + +L VSGG DSM L L A+ ++ + Sbjct: 35 LKNIRKNRMFEK----GEKVLAVVSGGKDSMALWDILVK-------EGYNVVAMYINLGI 83 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112 E + V + V K + + + L ++ Sbjct: 84 GEYSNRSQEVVEKFAKENNLPLIVKDIKKEFGLDIYKLSKTLRRSPCSVCGSIKRYLFNK 143 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A + + T H DD+ T++ + E + G + + +P Sbjct: 144 VAYDGGFSAVATGHNLDDEAATLFGNVL-SWEEGYLARQGPVLPQTHPKLIKKVKPLYTL 202 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----------K 221 + ++L I + + + + + ++ + K K Sbjct: 203 TERENMYYVLLNKIEFLHEECPHSVGARSILYKELLNKLEEESPGTKQRFLSGFLKKGKK 262 Query: 222 KFQDLRVKVN 231 FQD+R K+ Sbjct: 263 HFQDVREKLE 272 >gi|330721907|gb|EGG99859.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium IMCC2047] Length = 282 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 15/183 (8%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76 ++V +SGG DS +L L ++ K A+++D + ++V Y+ + Sbjct: 36 GDKVMVCLSGGKDSYTMLEILRNLQQHAPV-KFDIIAVNLD-QKQPGFPEDVLPNYLESI 93 Query: 77 CSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 I +SVV K + +T A R + A I AT I H DD + Sbjct: 94 DQPYFILEKDTYSVVKEKTPEGKT-TCALCSRLRRGSLYGFANEIGATKIALGHHRDDIM 152 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 ET+++ K M + D D + RP C+ DI++F + P Sbjct: 153 ETLFLNMFHGGKLKAMPPKLLSD----DKKNVLIRPLAYCKESDIQTFSDFKQFPII--P 206 Query: 193 SNT 195 N Sbjct: 207 CNL 209 >gi|150015538|ref|YP_001307792.1| PP-loop domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902003|gb|ABR32836.1| PP-loop domain protein [Clostridium beijerinckii NCIMB 8052] Length = 288 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 20/180 (11%) Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75 + I V +SGG DS+ L+ L L K + +++D + + Sbjct: 50 IQEGDKIAVGISGGKDSI-LMAKLFQELQRHGQVKFELVFLAMDPGYHPD-------IKN 101 Query: 76 V----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 + C L I + + + R + AK + H Sbjct: 102 LLIENCEHLNIPIHMYESGIFDVVDKMAKDYPCYLCARMRRGSLYAKAKEFGCNKLALGH 161 Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 ++D +ET + K M L + L + RP E I+ F+ I Sbjct: 162 HYNDVIETTMLNILYGGNFKTM-LPKLKAKNF--EGLELIRPMYFIEEEYIKRFINYSGI 218 >gi|46578552|ref|YP_009360.1| hypothetical protein DVU0135 [Desulfovibrio vulgaris str. Hildenborough] gi|120603868|ref|YP_968268.1| PP-loop domain-containing protein [Desulfovibrio vulgaris DP4] gi|46447963|gb|AAS94619.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|120564097|gb|ABM29841.1| PP-loop domain protein [Desulfovibrio vulgaris DP4] gi|311232477|gb|ADP85331.1| PP-loop domain protein [Desulfovibrio vulgaris RCH1] Length = 303 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 32/203 (15%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F +E + + ILVA+SGG DS+ L++ + S + + +D Sbjct: 30 FSRQVERGIHEQKLFTHDDRILVALSGGKDSLALML-------ELSRQGYNVTGLHIDLA 82 Query: 62 L---RETAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYAL 109 + A+ V C+ + V + + + +A + + Sbjct: 83 IPVSSPAARGV---VERFCALHGLPLIVKEMANEGLAIPAVKERLTRPICSACGKIKRYY 139 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE----KGMGLSGMCDTILYDLNLWI 165 ++ A T++ T H DD++ ++ + R A +G GL D Sbjct: 140 FNKTAIDEGFTVLATGHNLDDEVARLFSNTLRWDAAYLSDQGPGLD------SEDGFTRK 193 Query: 166 SRPFLRCRREDIRSFLLQRNISW 188 +P R + ++ I Sbjct: 194 VKPLWRLTEFETANYAFLMGIEH 216 >gi|85000461|ref|XP_954949.1| hypothetical protein [Theileria annulata strain Ankara] gi|65303095|emb|CAI75473.1| hypothetical protein, conserved [Theileria annulata] Length = 774 Score = 75.7 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 45/334 (13%), Positives = 89/334 (26%), Gaps = 121/334 (36%) Query: 23 LVAVSGGSDSMGLLI---------------ALHSVLSDRSFGKIK--------------- 52 L++ SGG DSM LL L + S + K Sbjct: 139 LLSCSGGVDSMSLLHSFGIIKTSYEEIIGEILTILKSRLNNNPFKIKSETTKLDHQKRKV 198 Query: 53 ------------FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV------VSWKNSKP 94 F + +H RE ++ + C + + + + K+ Sbjct: 199 EVINFLKKFYDNFKVVYFNHKQREDVDKDIEVIKAACEKYKFDLIIEELPQELESKSEVS 258 Query: 95 QTGLMAAAREARYAL-----------------------ISEHAKTINATLI--------- 122 + G R+ R + K ++ L+ Sbjct: 259 KYGPQLMFRKWRRETCIKIIDGLSSADSTSKIGDELRDLEHVMKFLDENLVDLQTVKTPE 318 Query: 123 ---------MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 H +D ET+ ++ RD + +GL+ D Sbjct: 319 DLIGLKGLVFMGHHLNDNFETLLLKISRDTSIINLGLNNFQDI----------------- 361 Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 N + D +N + +ER +R+ V + ++ + D + N Sbjct: 362 -----------NEKYHADSTNDELHYERNILRKNV----IPSIVAGINGTYDTSSESANQ 406 Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + + +S A + I +Y+ Sbjct: 407 SVNEFYQNINNLSKSFDAFKESIEKEVEMFFYYI 440 >gi|325479605|gb|EGC82698.1| PP-loop family protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 269 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 15/214 (7%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62 I++V+ F SL+ + VA+SGG DS+ LL L L S K I +D Sbjct: 23 IKAVKEF--SLINEGDKVAVAISGGKDSL-LLAKLIEELHKHSKVKFDVEYICMDPGYDK 79 Query: 63 --RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 R+ + + Y+ + V+ +K AR R + AK + Sbjct: 80 ENRDQLEKNLAYLKIHANIYDSQVFEVAETITKGDYPCYMCAR-MRRGFLYAKAKELGCN 138 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + H +D +ET M K M + ++ + RP +DI+ + Sbjct: 139 KVALGHHMNDVIETTMMNVLYAGNFKTMKPKLVAQNF---DDMQLIRPLYYAHEDDIKRW 195 Query: 181 LLQRNISWCEDP---SNTDDRFERVRVRRFVRDI 211 ++ + + + + R +V+ + D+ Sbjct: 196 RDYVDLVALNCACTVTKSSESYTRKKVKELISDL 229 >gi|15602471|ref|NP_245543.1| hypothetical protein PM0606 [Pasteurella multocida subsp. multocida str. Pm70] gi|81637084|sp|Q9CN39|TTCA_PASMU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|12720877|gb|AAK02690.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 314 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 36/250 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ R I F ++V+ H L Sbjct: 41 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFEIVAVNLDQKQPGFPEHIL------ 91 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 92 -PEYLQSIGVDYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAQA 204 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 ++ P N +R V+ ++ D F ++ V + + Sbjct: 205 KHFPII--PCNLCGSQPNLQRQVVKEMLQKWDRQYPGRIETMFSAIQNIVPSHLCDTHLF 262 Query: 241 YLTVHMRSII 250 R I Sbjct: 263 NFKDLQRGQI 272 >gi|302870896|ref|YP_003839532.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302573755|gb|ADL41546.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 303 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 18/190 (9%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ILV +SGG DSM L L S + + + ++ + E + + V Sbjct: 42 KMFDKKDKILVVISGGKDSMALWHILAS-------EEYNVTGMYINLGIGEYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + + K + + + L ++ A + + Sbjct: 95 ESFAQKNNLEVIIKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+ T+ S + D+ + + +P + ++L Sbjct: 155 TGHNLDDEAATLLGNVLSWEEGYLARQSPVLDS-THPKLVKKVKPLYTLTERENLFYVLI 213 Query: 184 RNISWCEDPS 193 I + D Sbjct: 214 NKIEFLHDEC 223 >gi|87119920|ref|ZP_01075816.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121] gi|86164622|gb|EAQ65891.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121] Length = 280 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS +L L ++ + I FS ++V+ L + ++ + Sbjct: 39 GDKVMVCLSGGKDSYTMLEILRNLQAS---APIDFSIVAVN--LDQKQPGFPEHILPEYL 93 Query: 78 SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 S + + + ++ R + A I AT I H DD Sbjct: 94 SSIGVDYHILERDTYSIVKELVPEGKTTCGLCSRLRRGSLYGFADEIGATKIALGHHRDD 153 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 LET+++ K S + D + RP C+ +DI +F Sbjct: 154 ILETLFLNMFFGGKIK----SMPPKLLSDDGRHMVIRPLAYCKEKDIEAF 199 >gi|220906828|ref|YP_002482139.1| C32 tRNA thiolase [Cyanothece sp. PCC 7425] gi|219863439|gb|ACL43778.1| PP-loop domain protein [Cyanothece sp. PCC 7425] Length = 274 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 35/187 (18%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67 ++V +SGG DS L +L+ + I F ++V+ H L E Sbjct: 35 AGDRVMVCLSGGKDS---YTLLDLLLNLQRVAPIDFEILAVNLDQKQPGFPTHILPE--- 88 Query: 68 DEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 RL + + + V + + R ++ A AT Sbjct: 89 --------YLQRLGVPYRIIEEDTYSVVKRVIPEGKTMCGLCSRLRRGILYRVATEEGAT 140 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 I H DD +ET+++ K M + D D + RP C EDI + Sbjct: 141 KIALGHHRDDIVETLFLNLFFAGQLKAMPPKLLSD----DGQHMVIRPLAYCAEEDIERY 196 Query: 181 LLQRNIS 187 R Sbjct: 197 ANLRQFP 203 >gi|281412254|ref|YP_003346333.1| PP-loop domain protein [Thermotoga naphthophila RKU-10] gi|281373357|gb|ADA66919.1| PP-loop domain protein [Thermotoga naphthophila RKU-10] Length = 304 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++V+ F + + IL+AVSGG DS+ L L + + I+ Sbjct: 36 KAVKKF-KMFDRNSKILIAVSGGKDSVSLWHMLKKLGHEVDALFIRA-------GKSGMV 87 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAK 115 + V L +V A R R L+++ A Sbjct: 88 QKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEIAIMLRRPVCSICGVVRRYLMNKFAY 147 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRC 172 +++T H +D+ + G +L + + P + Sbjct: 148 ENGYNVVVTGHNLNDEASVLLGNILHWQE----GYMERQWPLLPKTHEKLVPKAKPLVLN 203 Query: 173 RREDIRSFLLQRNISWCE 190 EDI+ + I E Sbjct: 204 YEEDIKLYATLNEIPHLE 221 >gi|312137387|ref|YP_004004724.1| pp-loop domain protein [Methanothermus fervidus DSM 2088] gi|311225106|gb|ADP77962.1| PP-loop domain protein [Methanothermus fervidus DSM 2088] Length = 297 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 31/201 (15%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R + +LVAVSGG DS+ L L+ + +F + +D + + + Sbjct: 42 RLIEKDEKLLVAVSGGKDSLVLAYILNKL-------GYEFEGLHIDLGIEDYS----EMC 90 Query: 74 ----SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINAT 120 + S + + +V K + R RY ++++ A T Sbjct: 91 KKSSKKIFSEIGLPLHIVKIKKLLGRGIGEVKTRRPVCSYCGLTKRY-IMNKFAYDNGFT 149 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + T H DD+ V+ + + + D + +P R ++I + Sbjct: 150 AVATGHNLDDESAFVFSNILHWNIDYLSKQGPLLE--AEDKFVKKIKPLYELRDKEISLY 207 Query: 181 LLQRNISWCEDPSNTDDRFER 201 I ++ R Sbjct: 208 ASFAKIEHVT----KKCKYAR 224 >gi|324998101|ref|ZP_08119213.1| tRNA(Ile)-lysidine synthetase [Pseudonocardia sp. P1] Length = 246 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 8/121 (6%) Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DDQ ETV + R + + RP L RR D + + Sbjct: 1 DDQAETVLLGLGRGSGARSLAGMRAWSAPW-------LRPLLGLRRADTADACAEAGVPV 53 Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMR 247 DP N D RF R RVR V + L + + ++ + L + + Sbjct: 54 WADPHNADPRFTRARVRHEVLPLLEEVLGGGVTEALARTADQLRDDDTALDEQAARLREA 113 Query: 248 S 248 + Sbjct: 114 A 114 >gi|296109679|ref|YP_003616628.1| PP-loop domain protein [Methanocaldococcus infernus ME] gi|295434493|gb|ADG13664.1| PP-loop domain protein [Methanocaldococcus infernus ME] Length = 321 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 37/204 (18%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRE--TAKDEVRYVSDV 76 ++V +SGG DS+ + LH + R IK A+++D +R + V+ + Sbjct: 75 VIVGLSGGKDSL---LLLHLLECYRRKYGIKLIAVTIDVNIGGVRPWKEDSEGVKLIKKH 131 Query: 77 CSRLRIAHSVVSWKNS---------KPQTGLM-----AAAREARY---ALISEHAKTINA 119 C L I H ++S K G+ + + RY L E A+ Sbjct: 132 CEMLDIPHYLISNDLDVVQLSEILTKNSKGMEFSPCFSCSIIKRYILGKLAKEIAEREKI 191 Query: 120 T----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISR 167 + + H DD +T+ + K M + I R Sbjct: 192 SLDKVKLAYGHNLDDNSDTILANIFKGEKIKFMRPITKFSEREFYFGDLTLKLERCTIIR 251 Query: 168 PFLRCRREDIRSFLLQRNISWCED 191 P L + I L + I + +D Sbjct: 252 PLLPITEDLIIKALDECKIEYYKD 275 >gi|163868317|ref|YP_001609526.1| C32 tRNA thiolase [Bartonella tribocorum CIP 105476] gi|205830556|sp|A9IUA2|TTCA_BART1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|161017973|emb|CAK01531.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476] Length = 288 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 44/240 (18%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L + L LVA+SGG DS AL L R ++ A ++ Sbjct: 45 LLRHMRQALDDFSMLSTGKKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACNL 100 Query: 59 D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103 D H L D S +I + + + + Sbjct: 101 DQGQPGFPKHILP-----------DFLSSYKIPYRIEYQDTYSIVTDKLAQTQTYCSLCS 149 Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162 R + A+ + ++ H DD LET +M L+ M + D Sbjct: 150 RLRRGNLYRIAREEGCSALILGHHRDDVLETFFMNLFHGGR-----LAAMPGKLKNDEGD 204 Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219 L++ RP + ED+ F P N D +R ++ +++I+ K Sbjct: 205 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKNIERQMPGRK 262 >gi|302671817|ref|YP_003831777.1| PP-loop family protein [Butyrivibrio proteoclasticus B316] gi|302396290|gb|ADL35195.1| PP-loop family protein [Butyrivibrio proteoclasticus B316] Length = 387 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 30/185 (16%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---------VDHCLRETAKDE 69 I V +S G DSM + + GK F + +++ Sbjct: 146 GDKIAVCISDGKDSMLMAKLFQEL---EKHGKKNFKVVYMVMNPGYNRINY--------- 193 Query: 70 VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 +S+ + I +V ++ + R + AK + I Sbjct: 194 ETILSN-AKLMGIPVTVFDSDIFDVVDATSKGSPCYLCARMRRGYLYSKAKELGCNKIAL 252 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184 H +DD +ET++M + M + ++ + + RP R EDI+ + Sbjct: 253 GHHYDDVIETIFMGMTYGGQVQTM--MPKLHSTNFE-GMELIRPLYLVREEDIKRWRDYN 309 Query: 185 NISWC 189 N+++ Sbjct: 310 NLTFI 314 >gi|15668662|ref|NP_247461.1| hypothetical protein MJ_0485 [Methanocaldococcus jannaschii DSM 2661] gi|2496002|sp|Q57909|Y485_METJA RecName: Full=CTU1/ATPBD3 family protein MJ0485 gi|1591188|gb|AAB98476.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661] Length = 337 Score = 74.6 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 50/226 (22%) Query: 8 SVRFFV--RSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HC 61 V F+ ++ P I+ V +SGG DS+ + LH + R IK A++VD Sbjct: 63 KVGRFINKHKIIAPRDIVIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGG 119 Query: 62 LRE--TAKDEVRYVSDVCSRLRIAH-------------SVVSWKNSKPQTGLMAAAREAR 106 +R + V+ + C L + H +++ + + + + Sbjct: 120 IRPWKEDTEGVKLIKHHCEMLNVPHIILKNDLDVVELSEILTKHSKGMEFSPCFSCSVIK 179 Query: 107 YALISEHAKTINAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158 L+ + AK I + H DD +T+ + L M Sbjct: 180 RHLLGKLAKEIAENENIPYEKVKLAYGHNLDDNSDTILANIFKGER-----LKFMRPLTR 234 Query: 159 YDLN-------------LWISRPFLRCRREDIRSFLLQRNISWCED 191 + N I RP L DI L + I + +D Sbjct: 235 FKYNEVDYQSFKIPLEECIIIRPMLPILERDIIKALEECGIEYYKD 280 >gi|207093451|ref|ZP_03241238.1| hypothetical protein HpylHP_12006 [Helicobacter pylori HPKX_438_AG0C1] Length = 124 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 69 EVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATL 121 +++++SD+C I H ++ + + + ++ + R + A Sbjct: 1 DLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNK 60 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 + AH DD +E+ +M + + L M + L + RP ++ R F+ Sbjct: 61 VAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFV 115 Query: 182 LQRNIS 187 +NI Sbjct: 116 TSQNIP 121 >gi|14601833|ref|NP_148374.1| hypothetical protein APE_2086 [Aeropyrum pernix K1] gi|5105785|dbj|BAA81097.1| conserved hypothetical protein [Aeropyrum pernix K1] Length = 331 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 19/243 (7%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 S +E R + +L AVSGG DS LL L + F A+ + + Sbjct: 33 SKVERAIMRHRLVGKGDRVLAAVSGGKDSSTLLAVLSRLSRRIGF---HVVALYIHLGIY 89 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEH 113 E ++ + S+L + V A R +I+ Sbjct: 90 EYSEKSREASIRLASQLDVPLIVFDLNEVLGAGIPELAKASKRPPCSVCGMVKRYVINAA 149 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS--GMCDTILYDLNLWISRPFLR 171 A + + H DD + + +S G+ + + + RP Sbjct: 150 AVELGVDAVALGHNADDIA---VYNLKSFLNQDLEAISKLGVKTESIPGVAVGRVRPLYY 206 Query: 172 CRREDIRSFLLQRNISWCEDPSNT-DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 ++ + L + + + + R V ++ V ++ LK++ L +V Sbjct: 207 VYEKESFLYSLLAGLPFLHEECPFVERRQMEVELKETVNQLEDKRPGLKLQMVSKLAKRV 266 Query: 231 NNA 233 + Sbjct: 267 EDY 269 >gi|312623404|ref|YP_004025017.1| PP-loop domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203871|gb|ADQ47198.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 301 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 24/193 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + ILV +SGG DSM L L S + + ++ + E + + V Sbjct: 42 KMFDKKDKILVVISGGKDSMALWHVLSS-------EGYNATGMYINLGIGEYSDKSQQVV 94 Query: 74 SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123 + + + V K + + + L ++ A + Sbjct: 95 ENFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFFAVA 154 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSF 180 T H DD+ T+ G +L + + +P + + Sbjct: 155 TGHNLDDEAATLLGNVL----SWEEGYLARQSPVLESTHPKLVKKAKPLYTLTERENLFY 210 Query: 181 LLQRNISWCEDPS 193 +L I + D Sbjct: 211 VLINKIEFLHDEC 223 >gi|310658322|ref|YP_003936043.1| pp-loop family protein [Clostridium sticklandii DSM 519] gi|308825100|emb|CBH21138.1| PP-loop family protein [Clostridium sticklandii] Length = 290 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 30/192 (15%) Query: 12 FVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLR 63 F+++L I VA+SGG DSM + + F KI F I++D Sbjct: 40 FLKALNDYEMIQPGDRIAVAISGGKDSMLMAKLFQELQK---FSKIPFEVEYIAMDPGYH 96 Query: 64 ETAKDEVRYVSDVC----SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114 + + ++ + L I V + Q + R + Sbjct: 97 PS-------IRELMMDNFNYLNIPIKVFETDIFKIADKIAQDYPCYMCAKMRRGALYNKT 149 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 K + + H F+D +ET + L + T L + RP Sbjct: 150 KELGCNKLALGHHFNDVIETTMLNML-YTGAFKTMLPRLKSTNF--EGLELIRPLYYVEE 206 Query: 175 EDIRSFLLQRNI 186 I F I Sbjct: 207 VFIERFTQTNGI 218 >gi|154249688|ref|YP_001410513.1| PP-loop domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153624|gb|ABS60856.1| PP-loop domain protein [Fervidobacterium nodosum Rt17-B1] Length = 323 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 27/203 (13%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F ++ + +LVAVS G DS +L AL + + +K Sbjct: 30 FEKRVQKAINDFKMFQKEDKVLVAVSSGKDSSAVLYALKKLGYNVEGLFLKM-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALI 110 A + V V + + + ++ G A R R + Sbjct: 83 RHTNAAERV--VKSLQESIGVPINIYDTTQHFHGLGTSEIASIVRRPVCSICGIVRRYWM 140 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--- 167 + A ++++T H DD+ T + ++ + +L + R Sbjct: 141 NRFAVENGFSVLVTGHNLDDEA-TFLFGNILNWQVEYFA---RQWPVLEKTHEKFVRKAK 196 Query: 168 PFLRCRREDIRSFLLQRNISWCE 190 P + + +++ NI + E Sbjct: 197 PLIYVTERETYAYVFLNNIPFME 219 >gi|300122192|emb|CBK22766.2| unnamed protein product [Blastocystis hominis] Length = 202 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 16/132 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77 + + SGG DS L L ++ +G + +S+D + + V Sbjct: 4 RGQRVAIGASGGKDSTVLAYVLSTLNKRYDYG-LDLYLLSIDEGIVGYRDGSLETVKQNS 62 Query: 78 SRLRIAHSVVSWK---------------NSKPQTGLMAAAREARYALISEHAKTINATLI 122 ++ + S+K + T + R ++ A+ +A LI Sbjct: 63 IDYQLPLVIYSYKELFGYTMDEIVTQTLDESGYTKACSYCGVFRRQALNIGAERSHADLI 122 Query: 123 MTAHTFDDQLET 134 T H DD ET Sbjct: 123 ATGHNADDNAET 134 >gi|167627923|ref|YP_001678423.1| ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668475|ref|ZP_04756053.1| ATPase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877009|ref|ZP_05249719.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|205830354|sp|B0U092|TTCA2_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|167597924|gb|ABZ87922.1| putative ATPase of the PP-loop superfamily [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254843030|gb|EET21444.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 266 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ K A+++D + +EV + Sbjct: 33 GDKIMVCLSGGKDSYC-LLEMLLLLQQKAPIKFDIVAVNLD-QKQPGFPEEVLP--NYLK 88 Query: 79 RLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 I ++ R ++ + A+ N T + H DD Sbjct: 89 TKNIEFHIIERDTYSVVKRVIPDGKTTCGLCSRMRRGILYDFAEQNNITKVALGHHRDDI 148 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + +N Sbjct: 149 IETFFLNLFYNGSIKSMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSKLKNFPII-- 202 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 203 PCNLCGSQDNLQRVFIKDMLNRWENNNPERKNVIFKALS 241 >gi|320451026|ref|YP_004203122.1| Veg136 protein [Thermus scotoductus SA-01] gi|320151195|gb|ADW22573.1| Veg136 protein [Thermus scotoductus SA-01] Length = 321 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 23/204 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F+ E R L +LVAVSGG DS+ L L + + ++ Sbjct: 30 FVKETERAIRRHRMLQPGERVLVAVSGGKDSLALWDVLWRLGYEAVGLHLQL-------G 82 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AREA--------RYALI 110 + ++ + + VV + + A R A RY +I Sbjct: 83 IGAYSERSLEVTQSFAQDRGLELWVVDLRQAYGFGVPELAELSGRVACSACGLSKRY-II 141 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169 ++ A ++ T H DD+ ++ + L + L +PF Sbjct: 142 NQVAVEGGFRVVATGHNLDDEAAVLFGNLM---NPQEDALVRQGPVLPEKPGLAARVKPF 198 Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193 R ++ S+ L R I + + Sbjct: 199 FRFSEREVLSYTLLRGIRYLHEEC 222 >gi|307206037|gb|EFN84130.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Harpegnathos saltator] Length = 1363 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 28/198 (14%) Query: 6 IESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCL 62 +E+++ F + +LV +S G DS+ LL LH I + SA +VD Sbjct: 1039 VEAMQEF-DMIRDNDRVLVCLSANGKDSLSLLHTLHQYRFYARSKGIDFEISAATVDAG- 1096 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVV---------SWKNSKPQTGLMAAA-----REARYA 108 + + L + + + ++ + + A R R Sbjct: 1097 ----GADPLELMSYLKTLEVPYFYEEQVTDSSGANVDDNLLDASIASGACSFCDRSVRTQ 1152 Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168 + AK ++ DD E+ + GM + + +L + RP Sbjct: 1153 -LYSLAKRNGYNVLALGQHLDDLAESFLISVFHG----GMLKTMKAHYYIRREDLRVIRP 1207 Query: 169 FLRCRREDIRSFLLQRNI 186 F+ R + ++ F + + Sbjct: 1208 FIYVREKALKQFTESKKL 1225 >gi|260914014|ref|ZP_05920487.1| PP-loop family protein [Pasteurella dagmatis ATCC 43325] gi|260631647|gb|EEX49825.1| PP-loop family protein [Pasteurella dagmatis ATCC 43325] Length = 311 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 36/250 (14%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ R I F ++V+ H L Sbjct: 39 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 89 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y++ + +I +V K + +T + R ++ A + AT I Sbjct: 90 -PEYLASIGVDYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 147 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + Sbjct: 148 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYASA 202 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 + P N +R V+ ++ D F ++ V + + Sbjct: 203 KQFPII--PCNLCGSQPNLQRQVVKEMLQTWDRQYPGRIETMFSAMQNIVPSHLCDTALF 260 Query: 241 YLTVHMRSII 250 R I Sbjct: 261 NFKDIKRGQI 270 >gi|319407230|emb|CBI80869.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 278 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 75/231 (32%), Gaps = 26/231 (11%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L I L L+A+SGG DS AL L R + A ++ Sbjct: 34 LLRHIRQALDDFAMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 89 Query: 59 DHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALI 110 D + +++ D + +I + + + R + Sbjct: 90 DQG-QPN---FPKHILPDFLNYYQIPFRIEYQDTYSIVTDKLAQTQTYCSLCSRLRRGHL 145 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPF 169 A+ + ++ H DD LET M L+ M ++ D +L++ RP Sbjct: 146 YRIAREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDERDLFVLRPL 200 Query: 170 LRCRREDIRSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLK 219 + ED+ F + D +R +++ + DI+ K Sbjct: 201 IYAAEEDMEKFSQAMQFPIIPCSLCGSQDGLQRNAMKKMLNDIERKMPGRK 251 >gi|54113861|gb|AAV29564.1| NT02FT0177 [synthetic construct] Length = 267 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|56708129|ref|YP_170025.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670600|ref|YP_667157.1| hypothetical protein FTF1042 [Francisella tularensis subsp. tularensis FSC198] gi|134301940|ref|YP_001121909.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931637|ref|YP_001891621.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] gi|224457220|ref|ZP_03665693.1| predicted ATPase of the PP-loop superfamily protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254370615|ref|ZP_04986620.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874929|ref|ZP_05247639.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|81597459|sp|Q5NG17|TTCA1_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|122970935|sp|Q14HG9|TTCA1_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|205830353|sp|A4IXY7|TTCA1_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|205830589|sp|B2SGI4|TTCA_FRATM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|56604621|emb|CAG45675.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110320933|emb|CAL09058.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC198] gi|134049717|gb|ABO46788.1| putative ATPase of the PP-loop superfamily [Francisella tularensis subsp. tularensis WY96-3418] gi|151568858|gb|EDN34512.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|187712546|gb|ACD30843.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis subsp. mediasiatica FSC147] gi|254840928|gb|EET19364.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159330|gb|ADA78721.1| putative ATPase of the PP-loop superfamily protein [Francisella tularensis subsp. tularensis NE061598] Length = 267 Score = 74.2 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|254372877|ref|ZP_04988366.1| conserved hypothetical protein [Francisella tularensis subsp. novicida GA99-3549] gi|151570604|gb|EDN36258.1| conserved hypothetical protein [Francisella novicida GA99-3549] Length = 267 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFHIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|254369353|ref|ZP_04985365.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] gi|157122303|gb|EDO66443.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica FSC022] Length = 267 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|325119231|emb|CBZ54785.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1614 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 85 SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144 ++ + + + R +R ++ AH D+LET+ M+ R Sbjct: 943 ETEEGRDVTKEENVRSDERASRAR-----DSGEPRAYVVMAHHAGDELETLVMKLLRGSH 997 Query: 145 EKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-RFERV 202 +G + + + RPFL ++ ++ ++ +W ED +N ++ R Sbjct: 998 LTNLGGMSTVSPLSSRTPRFAVFRPFLSLQKAHLQRYVKALGGTWREDETNAMPTKYPRN 1057 Query: 203 RVRRFVRDI 211 VR + + Sbjct: 1058 AVRLRLLPL 1066 Score = 38.4 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49 P L+ SGGSDS LL A + S R+ Sbjct: 407 PPLFLLCCSGGSDSTALLHAFARLFSPRAIA 437 Score = 37.6 bits (86), Expect = 3.5, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%) Query: 42 VLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQ 95 + + + + DH R A E V +C + P+ Sbjct: 550 LPAAAGALTLPIHVVYFDHAQRPEAAQKEAASVRRLCEFYGFPFHRCALIRKPPE 604 >gi|291533801|emb|CBL06914.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Megamonas hypermegale ART12/1] Length = 105 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%) Query: 3 LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 + IE V F R +L+A SGG DSM L+ + K++ + Sbjct: 13 MEIIERVENFAREYDLFKAHDKLLIACSGGPDSMALVDIFQKLSVK---YKLEIIVAHAE 69 Query: 60 HCLRETAK-DEVRYVSDVCSR 79 H +R+ + ++ YV + C + Sbjct: 70 HGIRKESSLNDAWYVKNYCEQ 90 >gi|62262168|gb|AAX78050.1| unknown protein [synthetic construct] Length = 302 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 60 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 115 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 116 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 175 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 176 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 229 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 230 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 268 >gi|253997958|ref|YP_003050021.1| PP-loop domain-containing protein [Methylovorus sp. SIP3-4] gi|253984637|gb|ACT49494.1| PP-loop domain protein [Methylovorus sp. SIP3-4] Length = 332 Score = 73.8 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 25/259 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVL---SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV +SGG DS A+ +L +R+ K A+++D + ++V Sbjct: 61 VLVCMSGGKDS----HAMLMLLLALQERAPVDFKLIAMNLD-QKQPNFPEDVLPA--YLE 113 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + + +V + R +I AK + A I H DD Sbjct: 114 KLGVEYRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYSTAKALGANKIALGHHRDDI 173 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC- 189 ++T+++ G L M + + + + RP C +DI ++ Sbjct: 174 VQTLFLNMF-----FGSKLKAMPPKLSTNRGEFMVIRPLAYCAEKDIAAYARGMEFPIIP 228 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248 D + + +R +++ + + F+ + V+ ++ + + + S Sbjct: 229 CDLCGSQENLQRQKIKDMLNAWEREQPGRINNIFRAITNVEPSHLADTDLYDFKGLTSAS 288 Query: 249 IIAISQDILNIDSTLLFYL 267 + +I L Sbjct: 289 LEDEDPLFGDIAKEEQPAL 307 >gi|254374332|ref|ZP_04989814.1| conserved hypothetical protein [Francisella novicida GA99-3548] gi|151572052|gb|EDN37706.1| conserved hypothetical protein [Francisella novicida GA99-3548] Length = 267 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + V + R ++ + A+ N T + H DD Sbjct: 90 NKGVEFYIIERDTYSVVTRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|325185131|emb|CCA19622.1| unnamed protein product putative [Albugo laibachii Nc14] gi|325188334|emb|CCA22872.1| unnamed protein product putative [Albugo laibachii Nc14] Length = 996 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 16/223 (7%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + +L+ VSGG D L+ + L R+ + + +VD +TA + + Sbjct: 752 KMIQNGDRLLLGVSGGKD-SLSLLHILLHLQKRAPIEFDLACATVD---PQTASYDPSPL 807 Query: 74 SDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 D L + + + K + + + + L+ + +T ++ Sbjct: 808 KDYMKALGVEYHYLSENIMERAKCELNGSSICSYCSRMKRGLLYQCCRTNGFNKLVLGQH 867 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD E+ M + + M + D N+ I RP + R ++ F + Sbjct: 868 LDDIAESFVMSLFHNGQLRTMKANYWND----ARNIQIIRPLIYVREFLLQKFASDARLP 923 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230 + N FE+ + R V+ + L + F +R + Sbjct: 924 VINE--NCPACFEQPKERARVKKLLAQEETLLPQLFHCIRRAL 964 >gi|319898919|ref|YP_004159012.1| hypothetical protein BARCL_0753 [Bartonella clarridgeiae 73] gi|319402883|emb|CBI76434.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 272 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 28/232 (12%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58 L I L L+A+SGG DS AL L R + A ++ Sbjct: 28 LLRHIRQALDDFSMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 83 Query: 59 DHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALIS 111 + + + D + +I + + + + R + Sbjct: 84 N---QGQPGFPEHILPDFLNYHQIPYRIEYQDTYSIVTDKLTQTQTYCSLCSRLRRGHLY 140 Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL 170 A+ + ++ H DD LET +M L+ M ++ D L++ RP + Sbjct: 141 RIAREEECSAVILGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGDLFVLRPLV 195 Query: 171 RCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219 +D+ F P N D +R +++ + DI+ K Sbjct: 196 YAAEKDMEKFSQAMQFPIV--PCNLCGNQDSLQRNAMKKMLDDIERKMPGRK 245 >gi|313200025|ref|YP_004038683.1| pp-loop domain-containing protein [Methylovorus sp. MP688] gi|312439341|gb|ADQ83447.1| PP-loop domain protein [Methylovorus sp. MP688] Length = 310 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 25/259 (9%) Query: 22 ILVAVSGGSDSMGLLIALHSVL---SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 +LV +SGG DS A+ +L +R+ K A+++D + +EV Sbjct: 39 VLVCMSGGKDS----HAMLMLLLALQERAPVDFKLIAMNLD-QKQPNFPEEVLPA--YLE 91 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 +L + + +V + R +I AK + A I H DD Sbjct: 92 KLGVEYRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYSTAKALGANKIALGHHRDDI 151 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC- 189 ++T+++ G L M + + + + RP C +DI ++ Sbjct: 152 VQTLFLNMF-----FGSKLKAMPPKLSTNRGEFMVIRPLAYCAEKDIAAYARGMEFPIIP 206 Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248 D + + +R +++ + + F+ + V+ ++ + + + S Sbjct: 207 CDLCGSQENLQRQKIKDMLNAWEREQPGRINNIFRAITNVEPSHLADTDLYDFKGLTSAS 266 Query: 249 IIAISQDILNIDSTLLFYL 267 + +I L Sbjct: 267 LEDEDPLFGDIAKEEQPAL 285 >gi|296108939|ref|YP_003615888.1| PP-loop domain protein [Methanocaldococcus infernus ME] gi|295433753|gb|ADG12924.1| PP-loop domain protein [Methanocaldococcus infernus ME] Length = 290 Score = 73.8 bits (180), Expect = 5e-11, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + L ILV +SGG DS L + ++ + ++ + Sbjct: 42 FKMLSKDEKILVPISGGKDSHAAAYILKKL-------GYDIELFHINLGISNFSEISLEK 94 Query: 73 VSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123 V ++ + + +V+ K + + RY L+++ I+ Sbjct: 95 VKELSNFINAKLHIVNLKEITGKTIEDVKGKKCSICGI--TKRY-LMNKFGYEHGFDTIV 151 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T H DD+L + + + + + + + +D L + F + I+++ Sbjct: 152 TGHNMDDEL-SFMLNNLLGWNIRYLA-KHLPVLPAHDKFLKKVKIFYEIEEKYIKAYADA 209 Query: 184 RNISW 188 NI + Sbjct: 210 LNIPY 214 >gi|328676039|gb|AEB28714.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf. novicida 3523] Length = 266 Score = 73.8 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 23/243 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77 I+V +SGG DS L +L + I F I+V+ + +EV + Sbjct: 33 GDKIMVCLSGGKDSYC---LLEMLLLLQKKAPISFDIIAVNLDQKQPGFPEEVLP--NYL 87 Query: 78 SRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 I ++ R ++ + A+ N T + H DD Sbjct: 88 KNKGIEFYIIERDTYSVVKRVIPDGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDD 147 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 +ET ++ + + K M + D D + RP ++ + + Sbjct: 148 IIETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII- 202 Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHM 246 P N D +RV ++ + + + K F+ L + + + + ++ + Sbjct: 203 -PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALSNISPSQMLDKELFDFVNISK 261 Query: 247 RSI 249 R I Sbjct: 262 RDI 264 >gi|61657492|emb|CAI44404.1| hypothetical protein [Thermotoga sp. KOL6] Length = 304 Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 26/198 (13%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 ++++ F R + IL+AVSGG DS+ L L + D I+ Sbjct: 36 KAIKKF-RMFKKDSKILIAVSGGKDSVSLWHILKKLGYDVDALFIRA-------GKSAMV 87 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAK 115 + V L VV + R R L+++ A Sbjct: 88 QKAQEIVEKNAEILNTKLHVVDATQYFDGLSTQEISIILRRPVCSICGVVRRYLMNKFAY 147 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRC 172 +++T H +D+ + G +L + + P + Sbjct: 148 ENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPLVFN 203 Query: 173 RREDIRSFLLQRNISWCE 190 EDI+ + I E Sbjct: 204 YEEDIKLYAKLNEIPHLE 221 >gi|257065750|ref|YP_003152006.1| PP-loop domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256797630|gb|ACV28285.1| PP-loop domain protein [Anaerococcus prevotii DSM 20548] Length = 269 Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 23/241 (9%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCL 62 I++V+ F SL+ + VA+SGG DS+ L + + ++KF IS+D Sbjct: 23 IKAVKEF--SLINEGDKVAVAISGGKDSLILAKLIEEL---HKHSRVKFDVEYISMDPGY 77 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALISEHAKT 116 +D + + L I ++ + + + R + AK Sbjct: 78 DNENRD---LLEKNLAYLNIDGTIYDSEVFEVAETITKGDYPCYMCARMRRGFLYAKAKE 134 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 + + H +D +ET M K M + ++ + RP +D Sbjct: 135 LGCNKVALGHHMNDVIETTMMNVLYAGNFKTMKPKLIAQNF---EDMELIRPLYYLHEDD 191 Query: 177 I---RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233 I R ++ ++ + + + + R +++ + ++ ++ + + Sbjct: 192 IKRWRDYVALSALNCACTVTKSSESYTRKKIKELIAELKKDNPEVEKSILRSAENVNCDM 251 Query: 234 V 234 V Sbjct: 252 V 252 >gi|33152734|ref|NP_874087.1| putative ATPase [Haemophilus ducreyi 35000HP] gi|33148958|gb|AAP96476.1| putative ATPase [Haemophilus ducreyi 35000HP] Length = 343 Score = 73.4 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 34/227 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67 ++V +SGG DS L +L+ + I F ++V+ H L Sbjct: 70 AGDKVMVCLSGGKDS---YTLLDILLNLKLSAPINFDIVAVNLDQKQPGFPEHIL----- 121 Query: 68 DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 Y++ + +I +V K + +T + R ++ A + AT I Sbjct: 122 --PEYLASIGVEYKIVQENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIA 178 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD LET+++ + K S I D + RP C+ +DI + Sbjct: 179 LGHHRDDMLETLFLNMFYNGKLK----SMPPKLISDDAKHIVIRPLAYCKEKDIEKYAEA 234 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + P N +R V+ +++ D F L+ Sbjct: 235 KQFPII--PCNLCGSQPNLQRQVVKEMLQNWDRQYPGRIETMFSALQ 279 >gi|328950002|ref|YP_004367337.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450326|gb|AEB11227.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884] Length = 328 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 + + +LVA+SGG DS+ L L + + + I+ + E ++ Sbjct: 42 KMIREGDRVLVAISGGKDSLALWEVLTRLGYEATGLHIQL-------GIGEYSERAYEVT 94 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREA--------RYALISEHAKTINATLI 122 + + VV S A R A RY L++E A+ ++ Sbjct: 95 TRFARERGLPLIVVDLAESYGLGVPELSLATGRVACSGCGLSKRY-LMNEVAREEGFNVV 153 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFL 181 T H DD+ + R + L + L +PF ++ S+ Sbjct: 154 ATGHNLDDEAAVLLGNVLR---WQTDALPRQGPVLPEREGLARRIKPFYLFTEREVASYA 210 Query: 182 LQRNISW 188 L R I++ Sbjct: 211 LLRRIAY 217 >gi|205830659|sp|Q7VKY7|TTCA_HAEDU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 316 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 34/227 (14%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67 ++V +SGG DS L +L+ + I F ++V+ H L Sbjct: 43 AGDKVMVCLSGGKDS---YTLLDILLNLKLSAPINFDIVAVNLDQKQPGFPEHIL----- 94 Query: 68 DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123 Y++ + +I +V K + +T + R ++ A + AT I Sbjct: 95 --PEYLASIGVEYKIVQENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIA 151 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 H DD LET+++ + K S I D + RP C+ +DI + Sbjct: 152 LGHHRDDMLETLFLNMFYNGKLK----SMPPKLISDDAKHIVIRPLAYCKEKDIEKYAEA 207 Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 + P N +R V+ +++ D F L+ Sbjct: 208 KQFPII--PCNLCGSQPNLQRQVVKEMLQNWDRQYPGRIETMFSALQ 252 >gi|323348754|gb|EGA82995.1| Ncs6p [Saccharomyces cerevisiae Lalvin QA23] Length = 274 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%) Query: 39 LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN------- 91 + +L+DR I+ +S+D + D + V + + + S+K+ Sbjct: 1 MLKLLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMD 60 Query: 92 ----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 R + A + + ++T H DD ETV M R + Sbjct: 61 EIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR- 119 Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L I I R PF +++I + + + R R Sbjct: 120 --LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAR 177 Query: 206 RFVRDID 212 ++++++ Sbjct: 178 EYMKNLE 184 >gi|207345529|gb|EDZ72322.1| YGL211Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 205 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%) Query: 39 LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN------- 91 + +L+DR I+ +S+D + D + V + + + S+K+ Sbjct: 1 MLKLLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMD 60 Query: 92 ----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147 R + A + + ++T H DD ETV M R + Sbjct: 61 EIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR- 119 Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205 L I I R PF +++I + + + R R Sbjct: 120 --LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAR 177 Query: 206 RFVRDID 212 ++++++ Sbjct: 178 EYMKNLE 184 >gi|307169701|gb|EFN62277.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Camponotus floridanus] Length = 1435 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 25/201 (12%) Query: 6 IESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCL 62 +E+++ F + +LV +S G DS+ LL LH I + A SVD Sbjct: 1120 VEAMQEF-DMIRDNDRVLVCLSANGKDSLSLLHTLHQYRFYARSKGIDFEIGAASVDMG- 1177 Query: 63 RETAKDEVRYVSDVCSRLRIAHS------------VVSWKNSKPQTGLMAAAREARYALI 110 + + L + + V + ++ +G + ++ + Sbjct: 1178 ----GSDPLEIMSYLKALDVPYFYEEHMTDSANTNVDNPLDASVASGTCSFCDKSVRTQL 1233 Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 AK ++ DD E+ + K + + +L + RPF+ Sbjct: 1234 YSLAKRNGYNVLALGQHLDDLTESFLISVLHGGILK----TMKAHYYIRREDLRVVRPFI 1289 Query: 171 RCRREDIRSFLLQRNISWCED 191 R + +R F + + +D Sbjct: 1290 YVREKALRQFTESKKLPISQD 1310 >gi|218887418|ref|YP_002436739.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758372|gb|ACL09271.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 311 Score = 73.4 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 22/182 (12%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76 + ILVA+SGG DS+ L++ L + D + I + + R V Sbjct: 46 HDDRILVALSGGKDSLSLMLELSRLGYDVTGLHIDLAI--------PGSSPAARGVVERF 97 Query: 77 CSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 C + + V + ++ + +A + + ++ A N T++ T H Sbjct: 98 CEKHGLNLIVKEMGAEGLAIPDVKARLNRPVCSACGKIKRYFFNKTALDENFTVLATGHN 157 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNI 186 DD++ ++ + R LS + D +P R + ++ I Sbjct: 158 LDDEIARLFSNTLR---WDVAYLSDQGPDLAADGGFARKVKPLWRLSEFETANYAFLMGI 214 Query: 187 SW 188 Sbjct: 215 EH 216 >gi|190150300|ref|YP_001968825.1| hypothetical protein APP7_1031 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263643|ref|ZP_07545254.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|254789865|sp|B3GXW8|TTCA_ACTP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|189915431|gb|ACE61683.1| hypothetical protein APP7_1031 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871020|gb|EFN02753.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 318 Score = 73.0 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ + I F ++V+ H L Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHTL------ 94 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 95 -PEYLESIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 208 KQFPII--PCNL 217 >gi|307261460|ref|ZP_07543131.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868855|gb|EFN00661.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 318 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ + I F ++V+ H L Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHTL------ 94 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 95 -PEYLESIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 208 KQFPII--PCNL 217 >gi|325845752|ref|ZP_08169016.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481890|gb|EGC84921.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 220 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 13/189 (6%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++V+ + + + A+SGG DS+ L L L S + I +D Sbjct: 21 KFVKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSNVNFEVEYICMDPGYD 78 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTIN 118 + +D + L I + ++ S+ +G R + AK + Sbjct: 79 KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGDYPCYMCARMRRGFLYAKAKELG 135 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + H +D +ET M K M M N+ + RP +D+ Sbjct: 136 CNKVALGHHMNDAVETTLMNVLYAGNYKTMKPKLMAQNF---DNMELIRPMYFIEEKDVI 192 Query: 179 SFLLQRNIS 187 ++ + Sbjct: 193 AWRDYVGLD 201 >gi|89256381|ref|YP_513743.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS] gi|115314827|ref|YP_763550.1| hypothetical protein FTH_1022 [Francisella tularensis subsp. holarctica OSU18] gi|156502470|ref|YP_001428535.1| hypothetical protein FTA_1103 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367718|ref|ZP_04983739.1| hypothetical protein FTHG_00992 [Francisella tularensis subsp. holarctica 257] gi|290953804|ref|ZP_06558425.1| hypothetical protein FtulhU_05771 [Francisella tularensis subsp. holarctica URFT1] gi|295312815|ref|ZP_06803547.1| hypothetical protein FtulhU_05768 [Francisella tularensis subsp. holarctica URFT1] gi|122325157|sp|Q0BLX1|TTCA2_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|122500727|sp|Q2A3F9|TTCA2_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|205830355|sp|A7NC76|TTCA2_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2 gi|89144212|emb|CAJ79482.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica LVS] gi|115129726|gb|ABI82913.1| conserved hypothetical protein [Francisella tularensis subsp. holarctica OSU18] gi|134253529|gb|EBA52623.1| hypothetical protein FTHG_00992 [Francisella tularensis subsp. holarctica 257] gi|156253073|gb|ABU61579.1| PP-loop family protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 267 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ N T + H DD Sbjct: 90 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPTKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|330948475|gb|EGH48735.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 79 Score = 73.0 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207 GL+ M D + + RP L R+ + + + ++W EDPSN D +F R +R Sbjct: 1 RGLAAMPDQRVLGRG-HLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNFLRSQ 59 Query: 208 VRDIDLHAL 216 V + +A+ Sbjct: 60 VLPLLTYAM 68 >gi|146295177|ref|YP_001178948.1| PP-loop domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408753|gb|ABP65757.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 303 Score = 73.0 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 21/221 (9%) Query: 14 RSLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72 + IL AV SGG DSM L L A+ ++ + E + + Sbjct: 42 KMFDKKDKIL-AVISGGKDSMALWDVLVK-------EGYNVVAMYINLGIGEYSNRSQKV 93 Query: 73 VSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLI 122 V S+ + V K + + + L ++ A + + Sbjct: 94 VESFASKNNLPLIVKDIKKEFGLDIYKLSKTLKRSPCSICGSIKRYLFNKVAYDGGFSAV 153 Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H DD+ T+ + E + + + +P + ++L Sbjct: 154 ATGHNLDDEAATLLGNVL-SWEEGYLARQAPVLPQTHPKLIKKVKPLYSLTERENLYYVL 212 Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223 I + + R + + V + ++F Sbjct: 213 LNKIEFLHEECPHSVG-ARSILFKEVLNKLEEESPGTKQRF 252 >gi|259157176|gb|ACV96799.1| TilS [uncultured bacterium] Length = 86 Score = 73.0 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%) Query: 86 VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145 V + ++ G+ A AR+ARY + + +++TA DDQ ET + + Sbjct: 1 VERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKPGSGP 58 Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRRED 176 GLS M + + + RP L R + Sbjct: 59 --AGLSAMAEVSEFA-GTRLIRPLLARTRGE 86 >gi|156094549|ref|XP_001613311.1| hypothetical protein [Plasmodium vivax SaI-1] gi|148802185|gb|EDL43584.1| hypothetical protein, conserved [Plasmodium vivax] Length = 1060 Score = 73.0 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +L+ H +D ETV R K L G+ + + I RPF++ + ++ Sbjct: 496 SLVFVGHHRNDNNETVLFHFLRGAFIK--NLRGIKFVTAF-KDCLIYRPFIKLSKINLYM 552 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 ++ N SW D SN R +R V Sbjct: 553 YMQIVNKSWRFDTSNQSLSTSRNFIRHVVIP 583 Score = 38.4 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 16/82 (19%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------------KPQ 95 + + +H RE E +V ++C R ++ + K Sbjct: 325 NVTVVYCNHKTREDCVKEKNFVKNICRRHKLRFRTKVLRRGWRAEQEGAGQKNKPHHKRG 384 Query: 96 TGLMAAAREARYALISEHAKTI 117 + ARE R + + + + Sbjct: 385 NNFLLLAREWRRHVYVQLTRQL 406 >gi|330897080|gb|EGH28560.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 164 Score = 73.0 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 16/151 (10%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65 E+V F + ++V +SGG DS +L L + IKF ++V+ + Sbjct: 21 EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76 Query: 66 AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117 +V L I + +V + R + A I Sbjct: 77 ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 AT + H DD +ET ++ + + K M Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM 164 >gi|325293258|ref|YP_004279122.1| PP-loop domain protein [Agrobacterium sp. H13-3] gi|325061111|gb|ADY64802.1| PP-loop domain protein [Agrobacterium sp. H13-3] Length = 321 Score = 73.0 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 18/209 (8%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78 LV +SGG DS L+AL L R ++ A ++D + ++V + + Sbjct: 79 KRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLD-QGQPN---FPKHVLPEYLA 133 Query: 79 RLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 ++ +AH + K P G + R + A+ ++ H +D Sbjct: 134 KIGVAHRIEYRDTYSVVKEKVPAGGTYCSLCSRLRRGNLYRIAREEGCDALVLGHHREDI 193 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190 LET +M GM M D + +L + RP C ED+ F Sbjct: 194 LETFFMNFFHGGRLAGMPAKLMND----EGDLMVLRPLAYCAEEDMAKFAAAMEFPIIPC 249 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLK 219 D + D +R ++ + DI+ K Sbjct: 250 DLCGSQDGLQRNAMKEMLADIERRMPGRK 278 >gi|47202707|emb|CAF87749.1| unnamed protein product [Tetraodon nigroviridis] Length = 254 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 22/158 (13%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + +A SGG DS L + +L++R + +SVD + D V V + Sbjct: 53 VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSVETVKRNQQQYE 111 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 + +V + + + H DD ETV M R Sbjct: 112 LPLKIVVLRGAL---------------WLDNGCHRE------AGHNADDVAETVLMNVLR 150 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 G+ Y+ + + F + +D+ S Sbjct: 151 ASEGDGVVPRCKPLKYAYEKEIVLYAYFKKTFLKDLES 188 >gi|297618556|ref|YP_003706661.1| PP-loop domain-containing protein [Methanococcus voltae A3] gi|297618616|ref|YP_003706721.1| PP-loop domain-containing protein [Methanococcus voltae A3] gi|297377533|gb|ADI35688.1| PP-loop domain protein [Methanococcus voltae A3] gi|297377593|gb|ADI35748.1| PP-loop domain protein [Methanococcus voltae A3] Length = 393 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 70/240 (29%), Gaps = 73/240 (30%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEV----RY 72 I+V +SGG DS+ L+ L R I +AI+ ++ R E + Sbjct: 107 KIIVGLSGGKDSIALMHLL---EPYRRKFGISITAITADLNIN-GKRPWGNIEENPNLKK 162 Query: 73 VSDVCSRLRIAHSVVSWKNS-------------------KPQTGLMAAAREARYALISEH 113 V C L I H ++S + P R I EH Sbjct: 163 VHKQCENLNIPHKIISHCGNVVEMSNYLTENAKIKGMEYSPCFSCSLTRRHIITNYIHEH 222 Query: 114 A--------------------------------KTINATLIMTAHTFDDQLETVYMRSQR 141 + HT +D +T+ + Sbjct: 223 CNNNYNTYTNTNNTNNNNGNDENRENRENNRKNAEYKNYKVAFGHTLEDNSDTILANMFK 282 Query: 142 DYAEKGMG-------LSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCED 191 K + ++ + +DL+L I RP L + E I L + + + +D Sbjct: 283 GDKIKSLAPIKKFTPMNISFEDFGFDLDLKPCTIIRPILAIKEEKIIKALEECGLWYYKD 342 >gi|208779311|ref|ZP_03246657.1| hypothetical protein FTG_1605 [Francisella novicida FTG] gi|208745111|gb|EDZ91409.1| hypothetical protein FTG_1605 [Francisella novicida FTG] Length = 267 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + ++ R ++ + A+ + T + H DD Sbjct: 90 NKGVEFHIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENSVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|170717574|ref|YP_001784660.1| C32 tRNA thiolase [Haemophilus somnus 2336] gi|205830595|sp|B0UU61|TTCA_HAES2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|168825703|gb|ACA31074.1| PP-loop domain protein [Haemophilus somnus 2336] Length = 314 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ R I F ++V+ H L Sbjct: 41 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 91 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 92 -PEYLKSISVDYKIVAENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + + Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 204 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 205 KQFPII--PCNL 214 >gi|113461006|ref|YP_719073.1| C32 tRNA thiolase [Haemophilus somnus 129PT] gi|122945296|sp|Q0I3K3|TTCA_HAES1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|112823049|gb|ABI25138.1| tRNA s(2)C-32 sulfurtransferase [Haemophilus somnus 129PT] Length = 314 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ R I F ++V+ H L Sbjct: 41 GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 91 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 92 -PEYLKSISVDYKIVAENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + + Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 204 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 205 KQFPII--PCNL 214 >gi|118497512|ref|YP_898562.1| ATPase [Francisella tularensis subsp. novicida U112] gi|195536206|ref|ZP_03079213.1| hypothetical protein FTE_1165 [Francisella tularensis subsp. novicida FTE] gi|205830352|sp|A0Q6E3|TTCA1_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1 gi|118423418|gb|ABK89808.1| predicted ATPase of the PP-loop superfamily [Francisella novicida U112] gi|194372683|gb|EDX27394.1| hypothetical protein FTE_1165 [Francisella tularensis subsp. novicida FTE] Length = 267 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I+V +SGG DS L+ + +L ++ + A+++D + +EV + Sbjct: 34 GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89 Query: 79 RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131 + + V + R ++ + A+ + T + H DD Sbjct: 90 NKGVEFHIIQRDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENSVTKVALGHHRDDI 149 Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191 +ET ++ + + K M + D D + RP ++ + + Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203 Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 P N D +RV ++ + + + K F+ L Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242 >gi|262066347|ref|ZP_06025959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291379911|gb|EFE87429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 343 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 25/188 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG DS L + ++++ L E + ++ VC R Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHL-EESSKDIEDAKKVCDR 53 Query: 80 LRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTINATLIM 123 L I H VV+ + S E ++ ++ E A A + Sbjct: 54 LGIIHEVVNIRKNFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEVANKYKADYVA 113 Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H T + ET + S M + + + P +++IR L Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIREIAL 173 Query: 183 QRNISWCE 190 + + + Sbjct: 174 KIGLEVHD 181 >gi|212695922|ref|ZP_03304050.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM 7454] gi|212677045|gb|EEB36652.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM 7454] Length = 221 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 13/189 (6%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 +++V+ + + + A+SGG DS+ L L L S + I +D Sbjct: 22 KFVKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSKVNFEVEYICMDPGYD 79 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTIN 118 + +D + L I + ++ S+ +G R + AK + Sbjct: 80 KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGDYPCYMCARMRRGFLYAKAKELG 136 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178 + H +D +ET M K M M + + RP +D+ Sbjct: 137 CNKVALGHHMNDAIETTLMNVLYAGNYKTMKPKLMAQNF---DGMELIRPMYFIEEKDVI 193 Query: 179 SFLLQRNIS 187 ++ + Sbjct: 194 AWRDYVGLD 202 >gi|46143516|ref|ZP_00135037.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 293 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ + I F ++V+ L + ++ + Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 99 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +DI + + Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213 Query: 190 EDPSNT 195 P N Sbjct: 214 --PCNL 217 >gi|221502473|gb|EEE28200.1| cell cycle protein mesj, putative [Toxoplasma gondii VEG] Length = 1195 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 35/237 (14%) Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AH D++ET+ M+ R +G +S + + RPFL ++ + Sbjct: 626 YVVMAHHAGDEMETLLMKLLRGAHITNLGGMSAVSGLSSQTPRFAVFRPFLSLQKAQLHR 685 Query: 180 FLLQRNISWCEDPSNTDD-RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +L SW ED +N ++ R V + + A + K + V A ++ I Sbjct: 686 YLKALGGSWLEDETNALPEKYPRNAV---LSPSAVEADASRGK----AQGAVPRAGSLGI 738 Query: 239 PKYLTVHMRSIIAISQDILNID------------STLLFYLLRVSAAICGGQISLPGYRS 286 A S+ L+ L + ++ + + P Sbjct: 739 SPVFREERGGEAARSRVPLSAPVWAEDCREVHSEGDALEDAEKAASVVSANERGQPSRER 798 Query: 287 --MERVMLFLKSGKRGCVSIGR---VVIDRRANFL---------WITRAVRNLPTLI 329 + ++ + G + RRA+ L W+ R N + Sbjct: 799 NDAQALLTRIAEAAASIFCKGSEPTHALFRRASGLARQSAALRDWVDREASNWEERV 855 >gi|322514717|ref|ZP_08067743.1| PP-loop family protein [Actinobacillus ureae ATCC 25976] gi|322119312|gb|EFX91428.1| PP-loop family protein [Actinobacillus ureae ATCC 25976] Length = 317 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68 ++V +SGG DS L +L+ + I F ++V+ H L Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHIL------ 94 Query: 69 EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124 Y+ + +I +V K + +T + R ++ A + AT I Sbjct: 95 -PEYLKSIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152 Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183 H DD LET+++ G L M ++ D I RP C+ +DI + Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207 Query: 184 RNISWCEDPSNT 195 + P N Sbjct: 208 KQFPII--PCNL 217 >gi|165976404|ref|YP_001651997.1| hypothetical protein APJL_0995 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251088|ref|ZP_07337274.1| hypothetical protein APP6_0387 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307245883|ref|ZP_07527968.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307250225|ref|ZP_07532181.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252611|ref|ZP_07534505.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254856|ref|ZP_07536682.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257021|ref|ZP_07538797.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259298|ref|ZP_07541027.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|205830591|sp|B0BPR8|TTCA_ACTPJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|165876505|gb|ABY69553.1| hypothetical protein APJL_0995 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650098|gb|EFL80268.1| hypothetical protein APP6_0387 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853243|gb|EFM85463.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306857754|gb|EFM89854.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859933|gb|EFM91952.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862227|gb|EFM94195.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864505|gb|EFM96412.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866665|gb|EFM98524.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 318 Score = 72.2 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ + I F ++V+ L + ++ + Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 99 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +DI + + Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213 Query: 190 EDPSNT 195 P N Sbjct: 214 --PCNL 217 >gi|126208449|ref|YP_001053674.1| hypothetical protein APL_0975 [Actinobacillus pleuropneumoniae L20] gi|303253571|ref|ZP_07339709.1| hypothetical protein APP2_0759 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247973|ref|ZP_07530004.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|205830366|sp|A3N0Y3|TTCA_ACTP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|126097241|gb|ABN74069.1| hypothetical protein APL_0975 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302647491|gb|EFL77709.1| hypothetical protein APP2_0759 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855527|gb|EFM87699.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 318 Score = 72.2 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77 ++V +SGG DS L +L+ + I F ++V+ L + ++ + Sbjct: 44 GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98 Query: 78 SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130 + + + +V K P+ + R ++ A + AT I H DD Sbjct: 99 ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189 LET+++ G L M ++ D I RP C+ +DI + + Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213 Query: 190 EDPSNT 195 P N Sbjct: 214 --PCNL 217 >gi|6573726|gb|AAF17646.1|AC009978_22 T23E18.11 [Arabidopsis thaliana] Length = 412 Score = 72.2 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 49/214 (22%) Query: 2 FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61 F I V R + + + SGG DS L L + + R + +S+D Sbjct: 67 FEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSEL-NRRHSYGLDLFLLSIDEG 125 Query: 62 LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREAR 106 + D + V + + +VS+K+ T R+ R Sbjct: 126 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQVR 185 Query: 107 YALISEH-----------------------------AKTINATLIMTAHTFDDQLETVYM 137 + A + ++T H DD ETV + Sbjct: 186 SKFLHSIPSLSKFLQNRLFCFMILCLVEFLKALDRGAALLKVDKLVTGHNADDIAETVVL 245 Query: 138 RSQRDYAEKGMGL----SGMCDTILYDLNLWISR 167 R + +G I + ISR Sbjct: 246 NILRGDIARLSRCTSITTGEDGPIPRFTRMLISR 279 >gi|297721059|ref|NP_001172892.1| Os02g0266500 [Oryza sativa Japonica Group] gi|255670789|dbj|BAH91621.1| Os02g0266500 [Oryza sativa Japonica Group] Length = 106 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 11/100 (11%) Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDL-----------NLWISRPFLRCRREDIRSF 180 E +R R+ G+ + + + + RP L ++D+ Sbjct: 3 AELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDNFSRYGVILVRPMLEFSKDDMYKI 62 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 N W EDP+N + R R+R +R + + L + Sbjct: 63 CQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGSQLHL 102 >gi|221482148|gb|EEE20509.1| cell cycle protein mesj, putative [Toxoplasma gondii GT1] Length = 1549 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 35/237 (14%) Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRS 179 ++ AH D++ET+ M+ R +G +S + + RPFL ++ + Sbjct: 980 YVVMAHHAGDEMETLLMKLLRGAHITNLGGMSAVSGLSSQTPRFAVFRPFLSLQKAQLHR 1039 Query: 180 FLLQRNISWCEDPSNTDD-RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238 +L SW ED +N ++ R V + + A + K + V A ++ I Sbjct: 1040 YLKALGGSWLEDETNALPEKYPRNAV---LSPSAVEADASRGK----AQGAVPRAGSLGI 1092 Query: 239 PKYLTVHMRSIIAISQDILNID------------STLLFYLLRVSAAICGGQISLPGYRS 286 A S+ L+ L + ++ + + P Sbjct: 1093 SPVFRDERGGEAARSRVPLSAPVWAEDCREVHSEGDALEDAEKAASVVSANERGQPSRER 1152 Query: 287 --MERVMLFLKSGKRGCVSIGR---VVIDRRANFL---------WITRAVRNLPTLI 329 + ++ + G + RRA+ L W+ R N + Sbjct: 1153 NDAQALLTRIAEAAASIFCKGSEPTHALFRRASGLARQSAALRDWVDREASNWEERV 1209 Score = 39.1 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57 P L+ SGGSDS LL A + S R+ + A Sbjct: 380 PPLFLLCCSGGSDSTALLHAFARLFSPRAVALRQ--ACH 416 >gi|167720280|ref|ZP_02403516.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei DM98] Length = 97 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 +++ + +L I +A SGG DS LL + R G + A+ V H L A Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69 Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK 93 + + ++ L + Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPR 96 >gi|163784920|ref|ZP_02179681.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] gi|159879813|gb|EDP73556.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1] Length = 80 Score = 71.9 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 ILVA S G+DS L L + GKI ++H +R+ + +E + + Sbjct: 21 DKILVAYSTGADSSALAFLLTKLKEYLKIGKIAL--AYLNHSIRKESDEEEIFAKQFAEK 78 Query: 80 LR 81 L Sbjct: 79 LG 80 >gi|226327026|ref|ZP_03802544.1| hypothetical protein PROPEN_00887 [Proteus penneri ATCC 35198] gi|225204244|gb|EEG86598.1| hypothetical protein PROPEN_00887 [Proteus penneri ATCC 35198] Length = 65 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 N ++ RP L RE I + ++ + W ED SN DD ++R +R V + L + Sbjct: 5 NSYLLRPLLNITREQIEFYATEQELDWIEDDSNQDDSYDRNFLRLRVMPL----LTQRWP 60 Query: 222 KFQDL 226 F++ Sbjct: 61 HFRNR 65 >gi|158522234|ref|YP_001530104.1| PP-loop domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511060|gb|ABW68027.1| PP-loop domain protein [Desulfococcus oleovorans Hxd3] Length = 264 Score = 71.5 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 23/227 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSD 75 + V VSGG DS+ L L+ LS R VD E + + D Sbjct: 49 GDRVCVGVSGGKDSLTLFWFLYERLS-RIPISYTLFPCYVDPGF------EDGFGGVLQD 101 Query: 76 VCSRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 ++ +V+ ++ + +R R L + ++ + H Sbjct: 102 FFAQTGWPPLRVESTDCGIVAHSDANRENPCFLCSRLRRKRLFE-VSAELDCNKLALGHH 160 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +E++++ G ++ + + RP +DI+ F Sbjct: 161 KDDIIESLFINMC----YAGEISLMKPFLPMFGGKVTLVRPLALADEKDIQRFAGHLRFP 216 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234 ++P + + +R ++ + + +K F+ L + + Sbjct: 217 EFKNPCPSAETSKRSEIKALLEALYRGNRKVKGNIFRSLSNVKTDYL 263 >gi|221052694|ref|XP_002261070.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|194247074|emb|CAQ38258.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] Length = 967 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%) Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRC 172 A+ +LI H +D ETV + R K + G+ + + I RPF++ Sbjct: 407 ARKFVKSLIFLGHHRNDNNETVLFQFLRGAFIKNLKGMKFLTSI----KDCLIYRPFIKL 462 Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217 R+ + ++ SW D SN R +R + L Sbjct: 463 RKIHLYMYMQIVKKSWRFDTSNRKLSASRNFIRHVIIPSISSMLG 507 Score = 39.5 bits (91), Expect = 0.91, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 11/77 (14%) Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMA 100 + + +H RE E +V ++C R ++ KN+ K + Sbjct: 243 NITVLYCNHATREECIKEKNFVKNICRRHKLRFRTKLLKNNWEATPKNEPTRKRGNNFLL 302 Query: 101 AAREARYALISEHAKTI 117 ARE R + + + + Sbjct: 303 LAREWRRHVYVQLTRQL 319 >gi|315605197|ref|ZP_07880243.1| helix-turn-helix domain protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313014|gb|EFU61085.1| helix-turn-helix domain protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 109 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 11/97 (11%) Query: 5 PIESVRFFVRSLVYP--------AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56 P+ + VR+ ++P ++V +SGG+DS+ L + S + + Sbjct: 16 PLRACSLAVRAALHPILAGGTRARRLVVGLSGGADSLALALVTVDAASR---AGVPVVTV 72 Query: 57 SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93 +VDH LR ++ E V+++ L V + + Sbjct: 73 TVDHGLRPGSRAEAESVAELARSLGADAIVETVTVPR 109 >gi|159184950|ref|NP_354840.2| hypothetical protein Atu1858 [Agrobacterium tumefaciens str. C58] gi|205830658|sp|Q7CYD2|TTCA_AGRT5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|159140228|gb|AAK87625.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 311 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 24/212 (11%) Query: 20 AHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-D 75 LV +SGG DS AL L R ++ A ++D + ++V + Sbjct: 70 KRWLVGLSGGKDS----YGLLALLLDLKWRGLLPVELVACNLDQG-QPN---FPKHVLPE 121 Query: 76 VCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTF 128 +++ +AH + K P G + R + A+ ++ H Sbjct: 122 YLAKIGVAHRIEYRDTYSIVKEKVPSGGTYCSLCSRLRRGNLYRIAREEGCDALLLGHHR 181 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 +D LET +M GM + D + +L + RP C ED+ F Sbjct: 182 EDILETFFMNFFHGGRLAGMPAKLLND----EGDLMVMRPLAYCAEEDMAKFAAAMEFPI 237 Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219 D + D +R ++ + DI+ K Sbjct: 238 IPCDLCGSQDGLQRNAMKDMLADIERRMPGRK 269 >gi|167524896|ref|XP_001746783.1| hypothetical protein [Monosiga brevicollis MX1] gi|163774563|gb|EDQ88190.1| predicted protein [Monosiga brevicollis MX1] Length = 1082 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 16/191 (8%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++R + + ILV +SGG DS+ L+ L ++ + + A++++ Sbjct: 822 EAIRDY-DMIQEGDRILVGLSGGKDSLS-LLHCLLALQRKAPVRFEVGAVTMN----PNF 875 Query: 67 -KDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINAT 120 + R + L + + S + + + + ++ + Sbjct: 876 PGFDPRPLIPYLKALGVPYFFESQDLLAQAQDTQPSSICSWCARMKRGILYSCLRREGYN 935 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 ++ DD E+ M S + + M ++ I RP + R R+F Sbjct: 936 VLALGQHLDDLAESFVMSSFHNGRLRTMKAHYCNGK----GDVRIIRPLVYTRERQTRTF 991 Query: 181 LLQRNISWCED 191 + ++ +D Sbjct: 992 AAESHLPVIQD 1002 >gi|170288548|ref|YP_001738786.1| PP-loop domain-containing protein [Thermotoga sp. RQ2] gi|170176051|gb|ACB09103.1| PP-loop domain protein [Thermotoga sp. RQ2] Length = 304 Score = 71.1 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F R+ + IL+AVSGG DS+ L L + + I+ Sbjct: 36 KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112 + V L +V + R R L+++ Sbjct: 85 GMVQKAQEIVEKNAELLNTKLHIVDATEYFEGLSTQEISIMLRRPVCSICGVVRRYLMNK 144 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169 A +++T H +D+ + G +L + + P Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200 Query: 170 LRCRREDIRSFLLQRNISWCE 190 + EDI+ + I E Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221 >gi|296237834|ref|XP_002763910.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Callithrix jacchus] Length = 194 Score = 71.1 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 19/128 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L ++ I ++VD + + V Sbjct: 46 RLLPPGAVVAVGASGGKDSTVLAHVLRELVPRLG---ISLQLVAVDEGIGGYRDAALAAV 102 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 +R + +VV++++ + A AR R + E A+ + Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162 Query: 118 NATLIMTA 125 AT I+T Sbjct: 163 GATHIVTG 170 >gi|257783999|ref|YP_003179216.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469] gi|257472506|gb|ACV50625.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469] Length = 529 Score = 71.1 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 26/197 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62 + IE +R V +++A+SGG DS + +H + D + + + V+H L Sbjct: 204 NIIEQKVEEIRQKVGNGRVILALSGGVDSSVVAALVHRAIGD------QLTCVFVNHGML 257 Query: 63 RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQ-----TGLMAAAR----EARYALISE 112 R+ E V C + + V + + T R E E Sbjct: 258 RKG---EPEMVEQVFCKQFNVPLIHVHAEERYAELLAGVTEPEKKRRLIGTEFWKVFFDE 314 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFL 170 K + + D +E+ R K + + I + + + P Sbjct: 315 AQKLDGVQFLAQGTIYPDIIES----GARKTGGKAATIKSHHNLIPFPEGVHFDLIEPLD 370 Query: 171 RCRREDIRSFLLQRNIS 187 ++++R+ + + Sbjct: 371 HFFKDEVRALGVSLGLP 387 >gi|302876712|ref|YP_003845345.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B] gi|307687388|ref|ZP_07629834.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B] gi|302579569|gb|ADL53581.1| PP-loop domain protein [Clostridium cellulovorans 743B] Length = 290 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%) Query: 4 SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I +++ + +L+ I VA+SGG DS+ + +L + + I++D Sbjct: 39 KFIRAIKDY--NLIEEGDKIAVAISGGKDSLLMAKLFQELLKHKKM-NFEVEFIAMDPGY 95 Query: 63 RETAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGL-----MAAAREARYALISEH 113 E+ + + L I + + + + + R ++ Sbjct: 96 HES-------IRTLLEDNLKYLEIDAHIFNADIFEVAEKIAQDYPCYMCAKMRRGVLYSK 148 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 A+ + + H ++D +ET + K M D N+ + RP Sbjct: 149 AQELGCNKLALGHHYNDVIETTMLNILYAGNFKTMLPKLKADNF---ENMELIRPLYYIE 205 Query: 174 REDIRSFLLQRNI 186 + I++F+ I Sbjct: 206 EKSIKNFIQHSGI 218 >gi|70607306|ref|YP_256176.1| ATP binding protein [Sulfolobus acidocaldarius DSM 639] gi|68567954|gb|AAY80883.1| ATP binding protein [Sulfolobus acidocaldarius DSM 639] Length = 320 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 32/241 (13%) Query: 6 IESVRFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59 IE +R V+ L + I++AVSGG DS L L S + K A ++ Sbjct: 28 IEDIRDRVKREIERLGLSRASKIVLAVSGGKDSYVLADTLASFID-----HDKLVAYNII 82 Query: 60 HCLRETAKDEV--RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----REA-------- 105 + + E ++ + + L I S++ S T A R Sbjct: 83 EGISGYNRVEQVIQF-KNFLNELGIELIEDSFEKSVGFTLDQMVANSKKRNLNVSACTFC 141 Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162 R LI+ +N + T H DD+++ + + R + + G L Sbjct: 142 GGFRRKLINTAGLKLNGDYVATGHNLDDEVQAIMLNVIRGDLIRLIRF-GDKPIKLSSRF 200 Query: 163 LWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220 + +P R + + + + E P R +VR + ++ + Sbjct: 201 VLRVKPLRRIYEWETTMYAYYKGYKFQEVECPYIELKPTLRAKVRELLYALEEKRPGTLL 260 Query: 221 K 221 + Sbjct: 261 Q 261 >gi|73947791|ref|XP_541458.2| PREDICTED: hypothetical protein XP_541458 [Canis familiaris] Length = 504 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 19/130 (14%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L A + V SGG DS L L + + ++VD + + V Sbjct: 207 RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---VSLRLVAVDEGIGGYRDAALAAV 263 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117 + + +VV++ + + A AR R + E A+ + Sbjct: 264 RRQAALWDLPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 323 Query: 118 NATLIMTAHT 127 AT I+T Sbjct: 324 GATHIVTGEH 333 >gi|148269863|ref|YP_001244323.1| PP-loop domain-containing protein [Thermotoga petrophila RKU-1] gi|147735407|gb|ABQ46747.1| PP-loop domain protein [Thermotoga petrophila RKU-1] Length = 304 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F R+ + IL+AVSGG DS+ L L + + I+ Sbjct: 36 KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112 + V L +V + R R L+++ Sbjct: 85 GMVQKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEISIMLRRPVCSICGVVRRYLMNK 144 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169 A +++T H +D+ + G +L + + P Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200 Query: 170 LRCRREDIRSFLLQRNISWCE 190 + EDI+ + I E Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221 >gi|15642970|ref|NP_228012.1| hypothetical protein TM0197 [Thermotoga maritima MSB8] gi|4980693|gb|AAD35289.1|AE001704_10 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 304 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63 I+ + F R+ + IL+AVSGG DS+ L L + + I+ Sbjct: 36 KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84 Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112 + V L +V + R R L+++ Sbjct: 85 GMVQKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEISIMLRRPVCSICGVVRRYLMNK 144 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169 A +++T H +D+ + G +L + + P Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200 Query: 170 LRCRREDIRSFLLQRNISWCE 190 + EDI+ + I E Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221 >gi|163759585|ref|ZP_02166670.1| PP-loop [Hoeflea phototrophica DFL-43] gi|162283182|gb|EDQ33468.1| PP-loop [Hoeflea phototrophica DFL-43] Length = 305 Score = 70.7 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 20/217 (9%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSR 79 L+A+SGG DS L+AL L R + A ++D + +++ D ++ Sbjct: 73 RWLIALSGGKDS-YGLLALLLDLQWRGMLPVDLIACNLDQG-QPN---FPKHILPDFLTK 127 Query: 80 LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 + H + V + A R + A+ ++ H DD L Sbjct: 128 HGVRHRIEYRDTYSVVTEKVPEGATYCALCSRLRRGHLYRIAREEGCQALVLGHHRDDIL 187 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWC-E 190 ET ++ L+ M +L D + + RP C ED+ + Sbjct: 188 ETFFLNFFHGGR-----LAAMPPKLLNDEGDVMVLRPLAYCAEEDLARYAEALAFPIIPC 242 Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 D + D +R ++ + +I+ K + L Sbjct: 243 DLCGSQDGLQRNAMKAMISEIERRMPGRKDSMIRALA 279 >gi|205830652|sp|Q98NP4|TTCA_RHILO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA Length = 295 Score = 70.7 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62 +++ F S+V P LVA+SGG DS AL L R ++ A ++D Sbjct: 44 QAIEDF--SMVEPGQRWLVALSGGKDS----YGLLALLLDLKWRGLLPVELLACNLDQG- 96 Query: 63 RETAKDEVRYVS-DVCSRLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHA 114 + +++ D + IAH + N P+ + R + A Sbjct: 97 QPN---FPKHILPDYLNANGIAHRIEYQDTYSVVTNKLPEGSTYCSLCSRLRRGHLYRIA 153 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173 + + ++ H +D LET +M L+ M +L D + + RP C Sbjct: 154 REEGCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCA 208 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDID 212 D+ F D + + +R ++ + DI+ Sbjct: 209 EIDLEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDIE 248 >gi|160946268|ref|ZP_02093479.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270] gi|158447791|gb|EDP24786.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270] Length = 305 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 12/173 (6%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78 I VA+SGG DS+ + + + + I++D + E+ + S Sbjct: 65 GDKIAVAISGGKDSLIMAKLFQELKKN-GKDNFELEFIAMDPGYHP-SIKELLL--ENAS 120 Query: 79 RLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 L I + + + + R + AK + + H F+D +E Sbjct: 121 YLEIPLTYYPADIFAVADKIAGDYPCYMCARMRRGSLYAKAKELGCNKLALGHHFNDVIE 180 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186 T + + K M ++ I RP E I ++ + Sbjct: 181 TTMLNLLCAGSFKTMPPKLKAKNF---EDMEIIRPLYLIEEEYIIRWMKSTGL 230 >gi|213853118|ref|ZP_03382650.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 235 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 16/200 (8%) Query: 75 DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 +L + + +V + R ++ A + AT I H Sbjct: 15 AYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHH 74 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD L+T+++ KGM M D D + RP CR +DI F + Sbjct: 75 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRFAEAKAFP 130 Query: 188 WCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 P N +R + +RD D F ++ V + + Sbjct: 131 II--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKG 188 Query: 245 HMRSIIAISQDILNIDSTLL 264 I L D + Sbjct: 189 ITHGSEVIDGGDLAFDREEI 208 >gi|237739846|ref|ZP_04570327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423454|gb|EEO38501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 343 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 25/188 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG DS L + ++++ L E +KD + VC R Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDR 53 Query: 80 LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123 L I H VV+ + S E ++ ++ E A A + Sbjct: 54 LGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYVA 113 Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H T + ET + S M + + + P +++IR L Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIREIAL 173 Query: 183 QRNISWCE 190 + + + Sbjct: 174 KIGLEVHD 181 >gi|88861531|ref|ZP_01136139.1| hypothetical protein PTD2_04990 [Pseudoalteromonas tunicata D2] gi|88816471|gb|EAR26318.1| hypothetical protein PTD2_04990 [Pseudoalteromonas tunicata D2] Length = 178 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 9/159 (5%) Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165 R ++ AK + AT I H DD +ET+++ KGM D + Sbjct: 1 RRGILYRTAKELGATKIALGHHRDDMIETLFLNMFYGGKLKGM----PAKLASDDGQHMV 56 Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKK 222 RP C+ DI + + P N + +R ++ +++ D Sbjct: 57 IRPLAYCKEADIEEYAEHKEFPII--PCNLCGSQENLQRKNIKMMLQEWDKTNPGRIETI 114 Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261 F ++ + +A +S +AI + + +D Sbjct: 115 FTAMQNVTPSHLADNNLFDFKNLQKSDVAIGEGDIALDK 153 >gi|156086540|ref|XP_001610679.1| hypothetical protein [Babesia bovis T2Bo] gi|154797932|gb|EDO07111.1| hypothetical protein BBOV_IV007570 [Babesia bovis] Length = 302 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 46/201 (22%), Gaps = 79/201 (39%) Query: 21 HILVAVSGGSDSMGLLIAL----------------HSVLSDRSFGKI------------K 52 ++++ SGG DSM LL L L + + Sbjct: 95 PVILSCSGGQDSMSLLHCLGLIKHYAGGMVASTPWSRYLDNNDRFDLPSIYQSLMTLLRN 154 Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAAREA 105 + DHC R ++ + C + + V + AR+ Sbjct: 155 TYVVYFDHCARPDTDKDIDVIRSACEKYGLKFHLEKAESQVKQLAHDDISGNFQKCARDW 214 Query: 106 RYALISEHAKTINA--------------------------------------------TL 121 R I+ + Sbjct: 215 RREAYRRLIDDIDILQDGSDNSVSYSDSLLNGKIFNKRLLLQKSEDLDAASLINEHTRGI 274 Query: 122 IMTAHTFDDQLETVYMRSQRD 142 ++ H +D +ET + R Sbjct: 275 VLMGHHSNDNVETFLFKLLRG 295 >gi|269120310|ref|YP_003308487.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386] gi|268614188|gb|ACZ08556.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386] Length = 284 Score = 70.3 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 16/187 (8%) Query: 6 IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64 I++ + F SLV I VA+SGG DS+ L L L S + + IS++ Sbjct: 41 IKAAKEF--SLVEDGDRIAVAISGGKDSLL-LAKLLQELQRASRTEFELVFISMNPGFNS 97 Query: 65 TAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119 + + LRI + + + R + A ++ Sbjct: 98 E---NLENLKKNLDHLRIPCEIYDDNIFEIAEKMAKDYPCYMCAKMRRGSLYTKAVSLGC 154 Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 + H DD ETV M + + + + + ++ + RP +DI Sbjct: 155 NKLALGHHMDDVAETVLMSMFQMSKYE----TMLPRLKADNFDIELIRPLYYVEEKDIIK 210 Query: 180 FLLQRNI 186 F I Sbjct: 211 FTANNGI 217 >gi|76156692|gb|AAX27848.2| SJCHGC06955 protein [Schistosoma japonicum] Length = 148 Score = 70.3 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 12/122 (9%) Query: 28 GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV 87 GG DS L L ++L+ R + +S+D + D + V + + ++ Sbjct: 1 GGKDSTVLAYIL-NLLNKRYDYGAELLLLSIDEGISGYRDDSLMTVKRNQIQYALPLKIL 59 Query: 88 SWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 S++ R + + A + A I T H DD ETV Sbjct: 60 SYQELYGWSMDDIVKRIGNKRNCTYCGIFRRQALDKGALLLGANKICTGHNADDIAETVL 119 Query: 137 MR 138 M Sbjct: 120 MN 121 >gi|13470364|ref|NP_101931.1| C32 tRNA thiolase [Mesorhizobium loti MAFF303099] gi|14021104|dbj|BAB47717.1| mlr0047 [Mesorhizobium loti MAFF303099] Length = 271 Score = 70.3 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62 +++ F S+V P LVA+SGG DS AL L R ++ A ++D Sbjct: 20 QAIEDF--SMVEPGQRWLVALSGGKDS----YGLLALLLDLKWRGLLPVELLACNLDQG- 72 Query: 63 RETAKDEVRYVS-DVCSRLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHA 114 + +++ D + IAH + N P+ + R + A Sbjct: 73 QPN---FPKHILPDYLNANGIAHRIEYQDTYSVVTNKLPEGSTYCSLCSRLRRGHLYRIA 129 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173 + + ++ H +D LET +M L+ M +L D + + RP C Sbjct: 130 REEGCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCA 184 Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDID 212 D+ F D + + +R ++ + DI+ Sbjct: 185 EIDLEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDIE 224 >gi|315605195|ref|ZP_07880242.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313116|gb|EFU61186.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 254 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 30/255 (11%) Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181 ++ HT +DQ ETV +R R L + + + RP L RR D Sbjct: 23 VLLGHTMEDQAETVLLRLARGSGP--SSLRAIAPLARDEAGVTWLRPLLGLRRADTAGAC 80 Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241 Q ++ EDP+N + + R + + + Sbjct: 81 AQAGLTPVEDPTNA-----------------VDGPWRAADGSPLRRSALRHRALPALASA 123 Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---PGYRSMERVMLFLKSGK 298 L + +A S + D L R + P S+ V ++ + Sbjct: 124 LGMDPVPALARSAQLCADDDDALRQWARQLTRGARSGDAPEPGPSGVSLS-VSALAQAPR 182 Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358 R R +L + W G+ S S ++G + Sbjct: 183 AVRARAVREAASRAGLG------ALSLANVEAVDGLVVAWRGQGPIDLPSGSASRVGRGA 236 Query: 359 -YRKADVPSGIPPII 372 R P P + Sbjct: 237 EARIVLAPRAGSPAL 251 >gi|222099463|ref|YP_002534031.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359] gi|221571853|gb|ACM22665.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359] Length = 327 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 26/197 (13%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 +++ F + + IL+AVSGG DS+ L L + + I+ + Sbjct: 60 AIKKF-KMFRRDSKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GRSGMVQ 111 Query: 68 DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAKT 116 V L +V + R R L+++ A Sbjct: 112 KAQEIVEKNAELLGTKLHIVDATEYFEGLSTQEISIMLRRPVCSICGVVRRYLMNKFAYE 171 Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCR 173 +++T H +D+ + G +L + + P + Sbjct: 172 NGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPLVLNY 227 Query: 174 REDIRSFLLQRNISWCE 190 EDI+ + I E Sbjct: 228 EEDIKLYATLNEIPHLE 244 >gi|145550491|ref|XP_001460924.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124428755|emb|CAK93527.1| unnamed protein product [Paramecium tetraurelia] Length = 244 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 14/177 (7%) Query: 50 KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL 98 +S+D ++ D + V + ++S+K Sbjct: 2 GCHLYLLSIDEGIKGYRDDSLETVKQNQITYDLDLKILSYKELFNWSMDEVVAQIGLNNN 61 Query: 99 MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCD 155 R + A + I+T H DD ET M R K + D Sbjct: 62 CTYCGVFRRQALDRGAIQLGVDKIITGHNADDMAETFLMNLLRGDIFRLPKSTAIITGDD 121 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212 L +PF ++I + + + + R VR +++++ Sbjct: 122 GDNGIATLPRCKPFKYTYEKEIVMYAHYKKLIYFSTECTYSPNAFRGHVRELIKNLE 178 >gi|213581058|ref|ZP_03362884.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 247 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 34/226 (15%) Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAIS 253 D ++R +R L L + F + + L+ + L + I + Sbjct: 1 DAYDRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TT 55 Query: 254 QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306 + L + + +R +A + +P ++ER+ + C+ G Sbjct: 56 EGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGD 115 Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365 I R + LW + V T + +P T L L + + P Sbjct: 116 HEIRRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRP 168 Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400 + + L + + GG+ L + P+ R T Sbjct: 169 REEESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 214 >gi|291533799|emb|CBL06912.1| Predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Megamonas hypermegale ART12/1] Length = 207 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 12/157 (7%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RD 210 + N I RPFL RE+I ++ L NI+ C D +N +ER R+R + Sbjct: 1 MKAKNEDIIRPFLCLYREEIEAYCLAENINPCLDETNNCLDYERNRIRLDLIPRLKAYNP 60 Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV----HMRSIIAISQDIL-NIDSTLLF 265 + A+ K +N V + V R I I +L + Sbjct: 61 KVVTAICNSAKIIAQENDFINYYVENFYRDKVIVDIDNQGRKSIKIDIKVLKQEHKAIRN 120 Query: 266 YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302 L R + + ++++ FL +G G + Sbjct: 121 ALYRYIIKEFKRNLENISFVHIDKIDKFLYNGHTGLI 157 >gi|254173377|ref|ZP_04880050.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp. AM4] gi|214032786|gb|EEB73615.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp. AM4] Length = 271 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%) Query: 7 ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E VR ++ L+ +VA SGG DS+ L V + + A+ VDH L Sbjct: 39 EKVRRELKELMRDVNKAVVAYSGGKDSVVALYLAKEV-----YKVPELEAVMVDHGL--M 91 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 A++ + + L + V+ + S A + + ++A Sbjct: 92 AEEAIENAKRIAEHLGVPFKVLRYDYSDIFRNALLKAQSPCRACSKRTMEKLRKYALRNG 151 Query: 119 ATLIMTAH 126 I+T H Sbjct: 152 YRYIITGH 159 >gi|217967925|ref|YP_002353431.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724] gi|217337024|gb|ACK42817.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724] Length = 507 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 30/189 (15%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71 +R V +L+AVSGG DS L + L + D+ +AI VDH LR K+E Sbjct: 204 IREQVGENKVLLAVSGGVDSTTLAVLLQRAIGDK------LTAIFVDHGLLRIGEKEE-- 255 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYAL---ISEHAKTINATLIM 123 VS L + V+ + + R + E A+ + Sbjct: 256 -VSRFLKDLGVNLVVIDARERFLEKLRGVIDPEEKRRVIGHEFVGVFKEEARKRGPFKFL 314 Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIR 178 T D +E+ + GM + +L + PF ++++R Sbjct: 315 AQGTLYPDVIES-------AASNTGMAAKIKTHHNVGGLPEELGFELIEPFRYLFKDEVR 367 Query: 179 SFLLQRNIS 187 I Sbjct: 368 KIAEILGIP 376 >gi|213424699|ref|ZP_03357452.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 172 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 14/150 (9%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E++ F + I+V +SGG DS +L L ++ A+++D + Sbjct: 28 EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83 Query: 67 KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118 ++ +L + + +V K P+ + R ++ A + Sbjct: 84 --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141 Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148 AT I H DD L+T+++ KGM Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGM 171 >gi|238787189|ref|ZP_04630989.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia frederiksenii ATCC 33641] gi|238724977|gb|EEQ16617.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia frederiksenii ATCC 33641] Length = 225 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 16/200 (8%) Query: 75 DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 + + + +V + R ++ A + AT I H Sbjct: 3 AYLDKQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHH 62 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD L+T+++ KGM M D D + RP CR +DI F + R Sbjct: 63 RDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYP 118 Query: 188 WCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244 P N +R ++ +RD D F ++ V + + Sbjct: 119 II--PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKS 176 Query: 245 HMRSIIAISQDILNIDSTLL 264 + + L D L Sbjct: 177 ITHNSEIVDGGDLAFDREEL 196 >gi|255528397|ref|ZP_05395198.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296186775|ref|ZP_06855177.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7] gi|255507916|gb|EET84355.1| PP-loop domain protein [Clostridium carboxidivorans P7] gi|296048812|gb|EFG88244.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7] Length = 267 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 35/191 (18%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + + ++ L +++A SGG DS LL A L D A+++ L Sbjct: 5 DKYKELIKYLKSLGKVVLAFSGGVDSTFLLKASKEALGD------NVKAVTI---LSPYI 55 Query: 67 KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121 ++ L + H ++ + + A+ S AK Sbjct: 56 PKWEIEEAKELVKELGVKHEIIEAPIIDSIRYNPEDRCYLCKTAVFSMILNAAKEQGYDC 115 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179 ++ FDD + GL + + L I P L C + +IR+ Sbjct: 116 VIDGTNFDD------------IGDYRPGLRALKE-------LEIKSPLLECKLTKAEIRA 156 Query: 180 FLLQRNISWCE 190 F + ++ + Sbjct: 157 FSKELKLNTWD 167 >gi|305664217|ref|YP_003860505.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] gi|304378786|gb|ADM28625.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] Length = 298 Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 67/203 (33%), Gaps = 46/203 (22%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 L +E ++ +R I+V SGG DS L + VL + A+++D Sbjct: 19 LRKLEKIKEAIRE---KEKIVVMFSGGVDSTLLAKLAYDVLGN------NAIAVTID--- 66 Query: 63 RETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISE 112 + + E+R + + I H V+ + + + R+ R A++ Sbjct: 67 ---SPVIPRSEIRDAIQIAKLIGIRHEVIEIDELRNKYLVENPPDRCYLCRKFRDAIVKN 123 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 AK I ++ + D L I I PF+ Sbjct: 124 WAKRIGFDVVADGLHYTD-------------------LEDYRPGIAASTEDGIWHPFIEF 164 Query: 173 --RREDIRSFLLQRNISWCEDPS 193 +++IR + + PS Sbjct: 165 QVTKDEIREYSRLLGLPTWSKPS 187 >gi|116748162|ref|YP_844849.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697226|gb|ABK16414.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB] Length = 310 Score = 69.6 bits (169), Expect = 8e-10, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 21/183 (11%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSR 79 +LVAVSGG DS+ + L + + + +D + ++ + S Sbjct: 59 PLLVAVSGGKDSLAMWNVLRDLGYETKG-------LHIDLGIEAGFSRASAEAIERFASP 111 Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYAL-----------ISEHAKTINATLIMTAHTF 128 + S K + + R+ R + ++ + + H Sbjct: 112 RNLPWVTYSLKETI-GYSITDIRRKTRRKICSVCGFLKRQMLNRLTIREDYRALAVGHNL 170 Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188 DD+ + R + L + +P R ++IR + + I Sbjct: 171 DDEAGRLLGNIVRHRTRYFEKQYPYLPSDHPRLPARL-KPLYRLEADEIRIYCAETGIMP 229 Query: 189 CED 191 +D Sbjct: 230 LDD 232 >gi|220933394|ref|YP_002512293.1| putative cell cycle control ATPase [Thioalkalivibrio sp. HL-EbGR7] gi|219994704|gb|ACL71306.1| putative cell cycle control ATPase [Thioalkalivibrio sp. HL-EbGR7] Length = 265 Score = 69.6 bits (169), Expect = 9e-10, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 18/234 (7%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71 R + +L+ +SGG D L+ L R+ + + +A+++D ++ + Sbjct: 29 FRMIADGDRVLLGLSGGKD-SLSLLHLLHHFQRRAPVRFELAAVTID----PQSESFDPS 83 Query: 72 YVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTA 125 + L + + V + T A + L+ A+ ++ A Sbjct: 84 PLIPYMKALGVEYHYVREPIMELATEHMDNDSYCAFCSRMKRGLMYRTAREHGFNVLAMA 143 Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185 DD E+ M + K + + +L + RP + R +F Sbjct: 144 QHLDDLAESFLMSAFHGGRLK----TMKAHYRIDAGDLRVIRPLVYVRERQTAAFAEAAG 199 Query: 186 ISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237 + P+ D +R ++ + + L LR ++ + + Sbjct: 200 LPVISENCPACFDMPTQRQHMKELLAREEAALPRLFRNLLSTLRPLMSQGLEDI 253 >gi|194363836|ref|YP_002026446.1| C32 tRNA thiolase [Stenotrophomonas maltophilia R551-3] gi|254790147|sp|B4SRP3|TTCA_STRM5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|194346640|gb|ACF49763.1| PP-loop domain protein [Stenotrophomonas maltophilia R551-3] Length = 298 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 19/181 (10%) Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76 ++V +SGG DS L+ L L R+ + A+++D + +V + Sbjct: 48 AGDKVMVCLSGGKDS-YTLLDLLLQLQKRAPVPFELVAVNLD-QKQPG---FPEHVLPEY 102 Query: 77 CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L + + + V + + + R + HAK T I H D Sbjct: 103 LAALGVPYQIIEQDTYSVVSRVIPEGRTMCSLCSRLRRGALYNHAKAHGFTRIALGHHCD 162 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188 D + T++M L+ M +L D + RP R DI + R Sbjct: 163 DMVATLFMNLFHHAK-----LAAMPPKLLSDDGQHVVIRPLAYVREHDIAEYAQARRFPI 217 Query: 189 C 189 Sbjct: 218 I 218 >gi|294783066|ref|ZP_06748390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479944|gb|EFG27721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 343 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 25/188 (13%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79 +++ +SGG DS L + ++++ L E +KD + VC R Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDR 53 Query: 80 LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123 L I H VV+ + S E ++ ++ E A A + Sbjct: 54 LGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYVA 113 Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182 T H T + ET + S + + + + P +++IR L Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYILYRLAPEKLERLIFPLKPYSKQEIREIAL 173 Query: 183 QRNISWCE 190 + + + Sbjct: 174 KIGLEVHD 181 >gi|302338856|ref|YP_003804062.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636041|gb|ADK81468.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293] Length = 264 Score = 69.2 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 26/202 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--------- 72 +++ +SGG D L ++ + I + H L D Y Sbjct: 50 VILGISGGKD---SLALALALSLRLKWLPISYKL----HGLH---IDWEEYPVPDQKLTA 99 Query: 73 VSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 + L I V + S R + E A+ + I H D Sbjct: 100 LRRYFDLLGIPLETVRASMFPESFDGKFNCYLCSRNRRRIFFEKARELGVRKIALGHHLD 159 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189 D +ET + +G S + +L++ RP R I ++ Sbjct: 160 DIVETTMINLF----FRGQFDSMQPVQDFFGGDLFVIRPMCEVRESIIHRLTSALDLPVV 215 Query: 190 EDPSNTDDRFERVRVRRFVRDI 211 + + R R++ VR++ Sbjct: 216 KPDCPYHETNIRARLKPIVREL 237 >gi|206901586|ref|YP_002251252.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum H-6-12] gi|206740689|gb|ACI19747.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum H-6-12] Length = 507 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 102/311 (32%), Gaps = 49/311 (15%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71 +R + +L+AVSGG DS L + L + D K +AI VDH LR K+E Sbjct: 204 IRKQIGENRVLLAVSGGVDSTTLAVLLQRAVGD------KLTAIFVDHGLLRMGEKEE-- 255 Query: 72 YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123 V++V RL + VV + K + + E AK + Sbjct: 256 -VTEVLKRLGVNLVVVDAEERFLEKLKGVVDPEEKRKIIGHEFVEVFKEEAKKRGPFKFL 314 Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIR 178 T D +E+ + GM + +L + PF ++++R Sbjct: 315 AQGTLYPDVIES-------AASHTGMAAKIKTHHNVGGLPEELGFELIEPFRYLFKDEVR 367 Query: 179 SFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVK 229 + ++ +R VR+ V L L + K Sbjct: 368 RIAEILGLP--------ENIIKRQPFPGPGLAVRILGEVTRDKLELLRKADCILMEEIKK 419 Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289 + + + + + D + + + +++ + + +P Y + R Sbjct: 420 WEKY-DEIWQSFAVLLPIKTVGVKGDFRSYEYVIALRVVKSEDGMTANFVEVP-YEILGR 477 Query: 290 VMLFLKSGKRG 300 + + + G Sbjct: 478 IARRITNEVSG 488 >gi|227888868|ref|ZP_04006673.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] gi|227850705|gb|EEJ60791.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200] Length = 299 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 M+ R M + + ++ + RP ++ ++++ + ++ + ED +N + Sbjct: 1 MKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNFE 57 Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239 D R R+R V + + L F + ++ + Sbjct: 58 DDTLRNRLRHHVVPLLKKETTHLVKNANHFSESVALLSKCQSDFFD 103 >gi|240102208|ref|YP_002958516.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3] gi|239909761|gb|ACS32652.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3] Length = 276 Score = 68.8 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 15/128 (11%) Query: 7 ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 E +R + L+ +VA SGG DS+ L V + + A+ +DH L Sbjct: 39 ERIRKELDELMKNVDKAIVAYSGGKDSVVALYLAKEV-----YKVPELEAVMIDHGL--M 91 Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118 A++ + + L + V+ + S A + ++A Sbjct: 92 AEEAIENARRIAEHLGVPFRVLRYDYSDIFRNALLKGQSPCRACSRRTMEKLRKYAIRKG 151 Query: 119 ATLIMTAH 126 I+T H Sbjct: 152 YRYIITGH 159 >gi|241204874|ref|YP_002975970.1| C32 tRNA thiolase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858764|gb|ACS56431.1| PP-loop domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 289 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L LV +SGG DS L+AL L R ++ A ++D Sbjct: 39 RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +++ + H + + + + R + Sbjct: 98 G-QPN---FPKHVLPDYLNKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 154 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F + D + D +R ++ + DI+ K + L Sbjct: 210 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 265 >gi|218682648|ref|ZP_03530249.1| hypothetical protein RetlC8_27903 [Rhizobium etli CIAT 894] Length = 290 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L LV +SGG DS L+AL L R ++ A ++D Sbjct: 40 RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLQWRGLLPVELVACNLD- 97 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +++ + H + + + + R + Sbjct: 98 QGQPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 155 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F D + D +R ++ + DI+ K + L Sbjct: 211 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 266 >gi|218674152|ref|ZP_03523821.1| hypothetical protein RetlG_22787 [Rhizobium etli GR56] Length = 289 Score = 68.8 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L LV +SGG DS L+AL L R ++ A ++D Sbjct: 39 RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +R+ + H + + + + R + Sbjct: 98 G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 154 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F D + D +R ++ + DI+ K + L Sbjct: 210 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 265 >gi|150015449|ref|YP_001307703.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052] gi|149901914|gb|ABR32747.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052] Length = 274 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 35/191 (18%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 + V+ L +++A SGG DS LL L D A+++ L Sbjct: 5 DKYSELVKYLKGLGKVVLAFSGGVDSTFLLRVAKEALGD------NVKAVTI---LSPYI 55 Query: 67 KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121 ++ L + H ++ + + A+ + AK Sbjct: 56 PKWEIAEARELVRELGVQHEIIEAPIIDSIKFNPEDRCYLCKTAVFTMILNVAKEQGYNC 115 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179 ++ FDD +S + L + P L C + +IR+ Sbjct: 116 VIDGTNFDD-------------------ISDYRPGLKALKELEVRSPLLECKLTKAEIRA 156 Query: 180 FLLQRNISWCE 190 F + ++ + Sbjct: 157 FSKELGLNTWD 167 >gi|116252368|ref|YP_768206.1| C32 tRNA thiolase [Rhizobium leguminosarum bv. viciae 3841] gi|205830621|sp|Q1MG13|TTCA_RHIL3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|115257016|emb|CAK08110.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 289 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L LV +SGG DS L+AL L R ++ A ++D Sbjct: 39 RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +++ + H + + + + R + Sbjct: 98 G-QPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 154 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F D + D +R ++ + DI+ K + L Sbjct: 210 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 265 >gi|15806874|ref|NP_295597.1| GMP synthase [Deinococcus radiodurans R1] gi|13627172|sp|Q9RT91|GUAA_DEIRA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase gi|6459656|gb|AAF11428.1|AE002027_1 GMP synthase [Deinococcus radiodurans R1] Length = 506 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%) Query: 4 SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62 IE VR + +L+ +SGG DS L + L + +R +A+ +DH L Sbjct: 199 ELIEGVRA---QVGDTGRVLLGISGGVDSSTLALLLAKAVGER------LTAVFIDHGLL 249 Query: 63 RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113 R E V + L + V K+ S P+ RE A E Sbjct: 250 RLG---EREQVEAALTPLGVNLVTVDAKDEFLGQLAGVSDPEQKRKIIGREFIRAFERET 306 Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173 AK + + + D +E+ + + D+ + PF Sbjct: 307 AKLGDFEFLAQGTLYPDVIES-----AGGEGAANIKSHHNVGGLPDDVQFKLVEPFRTLF 361 Query: 174 REDIRSFLLQRNIS 187 ++++R + Sbjct: 362 KDEVREIARLLGLP 375 >gi|226355410|ref|YP_002785150.1| GMP synthase [Deinococcus deserti VCD115] gi|259647676|sp|C1D0M2|GUAA_DEIDV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase gi|226317400|gb|ACO45396.1| putative GMP synthase [Deinococcus deserti VCD115] Length = 511 Score = 68.4 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 19/178 (10%) Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCS 78 +L+ +SGG DS L + L + +R +A+ +DH LR E V Sbjct: 212 GRVLLGISGGVDSSTLALLLARAVGER------LTAVFIDHGLLRLG---EREQVEAALR 262 Query: 79 RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 L + V + S P+ RE A E AK + + + Sbjct: 263 PLGVNLVTVDAREEFLGSLRGVSDPEQKRKIIGREFIRAFERETAKLGDFDFLAQGTLYP 322 Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 D +E+ + + DL + PF ++++R + Sbjct: 323 DVIESAGGHHGDKSGAANIKSHHNVGGLPEDLKFKLVEPFRTLFKDEVREIAQLLGLP 380 >gi|269986991|gb|EEZ93267.1| PP-loop domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 209 Score = 68.0 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 10/158 (6%) Query: 74 SDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIM 123 + C+R + + + S+K+ + +A R LI+ A ++A + Sbjct: 2 EEYCNRYGVDYKIYSYKDFTGRTMDSITKTREGIPCSACGVLRRHLINYAASEVSADKVA 61 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 TAH DD+ E V M ++ EK + L I + +PFL ++ F + Sbjct: 62 TAHNMDDEAENVIMNLVQNDIEKMVRLGAYSGVIKEKGFVPRIKPFLFLSEKETMLFSML 121 Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221 +I+ P R + R ++ ++ + K Sbjct: 122 NDINAIHTPCPYAGMGLRGLISREIKRMETEFIGAKRN 159 >gi|11498919|ref|NP_070150.1| hypothetical protein AF1321 [Archaeoglobus fulgidus DSM 4304] gi|2649255|gb|AAB89924.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 287 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 42/234 (17%) Query: 8 SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67 S++ F R L +L+A+SGG DS L L + + +D + ++ Sbjct: 37 SIKRF-RILRPEERVLIAISGGKDSSALAAVLKEL-------DYDAELLYIDLGIGNYSE 88 Query: 68 DEVRYVSD------------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115 + R V + V+ K + A RY +++ A+ Sbjct: 89 ESERVVRELSSSLDLSLNVVRLRDYGFTVDDVARKMRRKTCSACGTA--KRY-IMNRFAR 145 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRR 174 + ++ T HT +D L M +D + ++P Sbjct: 146 ENSFDVVATGHTAEDIASFYIKNVAGGTRVWAEKL--MPRNEPFDEKIVTRAKPLFEVSE 203 Query: 175 EDIRSFLLQRNISW--CEDPS--NTD------------DRFERVRVRRFVRDID 212 ++ ++L +I E P N + F + VR VR + Sbjct: 204 KENMLYVLVNDIPHTLMECPHAPNPEWKEIVYDIERRKPGFVKNFVRGLVRPAE 257 >gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6578] Length = 376 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 28/197 (14%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKF-SAISVDHCLRETAKDEV 70 +R P ++VA+SGG DS L S + I+ + VDH E +E Sbjct: 14 IRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDH---EGFSEEA 70 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114 R +V S L I H V++ + L A E R + + +A Sbjct: 71 RAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYA 130 Query: 115 KT-INATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 + + A I T H D E + R A + T DL P Sbjct: 131 REVLRADGIATGHYARIYVD-AEG-CVHLLRGKAGTKEQSYFLAQTRPEDLRHAYF-PLG 187 Query: 171 RCRREDIRSFLLQRNIS 187 + +IR++ I Sbjct: 188 DQTKNEIRTYARHHGIP 204 >gi|186510383|ref|NP_974358.2| RSY3 (RASPBERRY 3) [Arabidopsis thaliana] gi|332643400|gb|AEE76921.1| protein raspberry 3 [Arabidopsis thaliana] Length = 446 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----L 213 + + ++ + RP L +ED+ W EDP+N F R R+R + +++ Sbjct: 1 MKNQSIRLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFK 60 Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSA 272 L + + + R V+ LI + +TV + + + LN L + Sbjct: 61 SELQAVISECRRTRSFVDKVCTDLIHQTVTVTDQKGYAILDLERLNPSGVKDICLSKYLF 120 Query: 273 AI 274 A+ Sbjct: 121 AV 122 >gi|213971917|ref|ZP_03400017.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|213923342|gb|EEB56937.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 194 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 22/203 (10%) Query: 75 DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L + + +V + R + A I AT + H Sbjct: 4 AYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQIGATKMALGHH 63 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET ++ + A K M D + RP C +DI+++ + Sbjct: 64 RDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFP 119 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + R+ V+D+ L + + + + N + R Sbjct: 120 II--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQLAD------R 170 Query: 248 SIIAISQDILNIDSTLLFYLLRV 270 + SQ L ID T + V Sbjct: 171 KLFDFSQ--LRIDETAASRFVNV 191 >gi|15894062|ref|NP_347411.1| PP family ATPase [Clostridium acetobutylicum ATCC 824] gi|15023660|gb|AAK78751.1|AE007592_12 ATP-utilizing enzyme of the PP-loop superfamily [Clostridium acetobutylicum ATCC 824] gi|325508189|gb|ADZ19825.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium acetobutylicum EA 2018] Length = 271 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 35/191 (18%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66 E + ++ L +++A SGG DS LL A L D A+++ L Sbjct: 5 EKYKELIKYLKSLGKVVLAFSGGVDSTFLLKASKEALGD------NVKAVTI---LSPYI 55 Query: 67 KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121 R ++ L + H ++ + + A+ S AK Sbjct: 56 PKWEIREAEELVKELGVEHEIIKAPIIDSIKFNPEDRCYLCKTAVFSMILDAAKRQGYDC 115 Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179 ++ FDD + + L + P L C + +IR+ Sbjct: 116 VIDGTNFDD-------------------IKDYRPGLRALKELSVKSPLLECKLTKAEIRT 156 Query: 180 FLLQRNISWCE 190 F + + + Sbjct: 157 FSKELGLKTWD 167 >gi|330892523|gb|EGH25184.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae pv. mori str. 301020] Length = 225 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 22/203 (10%) Query: 75 DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127 L I + +V + R + A I AT + H Sbjct: 35 AYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHH 94 Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187 DD +ET ++ + + K M D + RP C +DI+++ + Sbjct: 95 RDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFP 150 Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247 P N + R+ V+D+ + ++ ++ + + Sbjct: 151 II--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRALQNVQPSQLA 199 Query: 248 SIIAISQDILNIDSTLLFYLLRV 270 L ID T + V Sbjct: 200 DRNLFDFSNLRIDETAASRFVNV 222 >gi|257459826|ref|ZP_05624932.1| conserved hypothetical protein [Campylobacter gracilis RM3268] gi|257442678|gb|EEV17815.1| conserved hypothetical protein [Campylobacter gracilis RM3268] Length = 260 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 36/190 (18%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ +E ++ +R L + VA SGG DS LL A H L R+ G I Sbjct: 1 MTKLEKLKADLRGL---GELAVAFSGGVDSSLLLRAAHDALGARAIG-ITIR-------- 48 Query: 63 RET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 + E+ + S I H + V+ + ++A ++ + E A+ + Sbjct: 49 SPYMSSREIAEAVEFASIYGIRHEILELSVAERIKDNPENRCYLCKKAVFSRLIERAREL 108 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + + DD E + L + P + + +I Sbjct: 109 GFSHVADGTNRDDLGE-------------------HRPGLKAKEELGVLSPLINLTKSEI 149 Query: 178 RSFLLQRNIS 187 R + + Sbjct: 150 RELSRELGLP 159 >gi|86357925|ref|YP_469817.1| hypothetical protein RHE_CH02310 [Rhizobium etli CFN 42] gi|123511794|sp|Q2K7U6|TTCA_RHIEC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|86282027|gb|ABC91090.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 290 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L LV +SGG DS L+AL L R ++ A ++D Sbjct: 40 RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLSVELIACNLD- 97 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +++ + H + + + + R + Sbjct: 98 QGQPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F D + D +R ++ + DI+ K + L Sbjct: 211 AEDDLARFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 266 >gi|257126066|ref|YP_003164180.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b] gi|257050005|gb|ACV39189.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b] Length = 312 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 14/186 (7%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 +++++ F + I VA+SGG DS+ LL L L S + IS++ Sbjct: 69 VKALKEF-EMVKDGDRIAVAISGGKDSL-LLSKLFQELKRASRTNFEVVFISMNPGFN-- 124 Query: 66 AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 + + L I + + + R + A ++ Sbjct: 125 -TANLNNLKKNLKHLNIPCEIYDDNIFEVAEKIAKDYPCYMCAKMRRGSLYTKATSLGCN 183 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 + H FDD +ET M G + + + ++ + RP + I + Sbjct: 184 KLALGHHFDDVIETTLMSMF----YMGKFETMLPKLKSDNYDIELIRPLFYVEEKAIIKW 239 Query: 181 LLQRNI 186 + I Sbjct: 240 VRNNGI 245 >gi|255321956|ref|ZP_05363106.1| conserved hypothetical protein [Campylobacter showae RM3277] gi|255301060|gb|EET80327.1| conserved hypothetical protein [Campylobacter showae RM3277] Length = 260 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 36/190 (18%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 ++ +E ++ +R L + VA SGG+DS LL A H L +R+ G I Sbjct: 1 MTKLEKLKADLRGL---GELAVAFSGGADSSLLLRAAHDALGERAIG-ITIR-------- 48 Query: 63 RET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117 + E+ + I H + V+ + ++A ++ + E A+ + Sbjct: 49 SPYMSSREIAEAVEFARIYGIRHEILELGVAEEIKDNPENRCYLCKKAVFSRLIERAREL 108 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 + + DD E + L + P + + +I Sbjct: 109 GFSRVADGTNRDDLGE-------------------HRPGLKAKEELGVLSPLINLTKSEI 149 Query: 178 RSFLLQRNIS 187 R + + Sbjct: 150 RELSRELGLP 159 >gi|162450853|ref|YP_001613220.1| putative ATPase [Sorangium cellulosum 'So ce 56'] gi|205830635|sp|A9G6U6|TTCA_SORC5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|161161435|emb|CAN92740.1| putative ATPase [Sorangium cellulosum 'So ce 56'] Length = 283 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 17/162 (10%) Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDEV 70 IL AVSGG DS + AL L+ R+ + A+++D H L + Sbjct: 24 GDRILCAVSGGKDSYAM-HALLVDLARRAPVRFSVIAVNIDQGHPGYPGHLLTDYMAAGG 82 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130 + +S+V+ K + +T + R ++ A+ + + I H DD Sbjct: 83 HEFRMISED---TYSIVTEKIPENKT-YCSLCSRLRRGILYRIARELGCSKIALGHHRDD 138 Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 + T+ + G S I D + + RP + C Sbjct: 139 AVTTLLLNLI----FAGQLKSMPPKLISDDGDNIVIRPLIYC 176 >gi|332796753|ref|YP_004458253.1| GMP synthase domain-containing protein [Acidianus hospitalis W1] gi|332694488|gb|AEE93955.1| GMP synthase domain protein [Acidianus hospitalis W1] Length = 371 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 26/198 (13%) Query: 1 MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 MF S IE V+ + V IL A+SGG DS + ++ +L + I + Sbjct: 1 MFNPESFIEEVKPQILKEVREEKILAAISGGVDSTTAAVLMYKILGKQLLP------IMI 54 Query: 59 DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREAR---YAL 109 D LR KDE R V D+ + + +V + + ++ R Y+ Sbjct: 55 DTGFLR---KDEARKVKDMLKDI-LPLQIVDKSEEFISALEGISDAEEKRKKFRDLFYST 110 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 +S AK ++ D +ET Q + L + + P Sbjct: 111 LSAIAKEHGIRYLVQGTIAADWVET-----QGGIKTQHNVLVQLGIDTEKTWGFKVIEPL 165 Query: 170 LRCRREDIRSFLLQRNIS 187 ++++R+ + Sbjct: 166 ADLYKDEVRALARYLGLP 183 >gi|327190534|gb|EGE57628.1| hypothetical protein RHECNPAF_4260016 [Rhizobium etli CNPAF512] Length = 290 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L L+ +SGG DS L+AL L R ++ A ++D Sbjct: 40 RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 98 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +R+ + H + + + + R + Sbjct: 99 G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLIVLRPLAYA 210 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F + D + D +R ++ + DI+ K + L Sbjct: 211 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 266 >gi|156937430|ref|YP_001435226.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I] gi|156566414|gb|ABU81819.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I] Length = 370 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%) Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71 +R LV +L AVSGG DS + L+ ++ G + I +D R+ E Sbjct: 15 IRELVGKEKVLAAVSGGVDSTT-----AAALAYKALGPEQIKVIFIDTGFMRKG---EPE 66 Query: 72 YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREAR---YALISEHAKTINATLIM 123 +V +V + + +V + K + + R Y ++SE AK A+ ++ Sbjct: 67 WVKNVLRDV-MPVEIVDAKERFFNAVKGLSDAEEKRKAFREVFYQVVSEEAKKWGASWLV 125 Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183 T D +ET + L + + + P + ++++R+ Sbjct: 126 QGTTAPDWIET-----TGGIKTQHNVLEQLGINVREKWGFKLLEPLVELYKDEVRAVARA 180 Query: 184 RNIS 187 + Sbjct: 181 LGLP 184 >gi|52548479|gb|AAU82328.1| PP-ATPase subunit of GMP synthase [uncultured archaeon GZfos14B8] Length = 310 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 26/199 (13%) Query: 1 MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58 MF IE V+ + ++AVSGG DS + H + DR A+ + Sbjct: 1 MFEPEKFIERQVDEVKETIGDGKAVIAVSGGVDSTVCAVLTHRAVGDR------LVAVFI 54 Query: 59 DHCL-RETAKDEVRYVSDV-----CSRLRIAHSVVSWKNSKPQTGLMAAAREAR---YAL 109 D L RE E V + + ++ + + K + R Y++ Sbjct: 55 DDGLMREG---EAEQVMNFFKARNMNARQVDAANEFFDALKGIVDPEEKRKAFRNTFYSV 111 Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169 ++ + NA ++ D ETV + + L I P Sbjct: 112 LARVVREENANCLVQGTIAADVAETV------KGIKTQHNILEQIGIDPGSYGLTIVEPL 165 Query: 170 LRCRREDIRSFLLQRNISW 188 + ++R + Sbjct: 166 REIYKPEVREVARSFGVPP 184 >gi|323165891|gb|EFZ51673.1| tRNA(Ile)-lysidine synthetase, C-terminal domain [Shigella sonnei 53G] Length = 238 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 26/208 (12%) Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDSTLLFYLLRV 270 + L + F + + A + + SQ L I L R Sbjct: 1 MPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARR 60 Query: 271 SA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323 +A + G +P ++ R+ + C+ G I R + LW ++V Sbjct: 61 AAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRFGAFEIRRYQSQLWWIKSVT 120 Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSM 380 I+ W Q L L + + P + + L + Sbjct: 121 GQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPPRADEAVSVRFKAPGLLHI 174 Query: 381 PSKEGGKPL--------LAPFSRFMTKF 400 + GG+ L + P+ R T Sbjct: 175 VGRNGGRKLKKIWQELGVPPWLRDTTPL 202 >gi|82593996|ref|XP_725240.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23480168|gb|EAA16805.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 955 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179 +LI H +D ET+ R L G+ + + Y N + RPF++ + I + Sbjct: 472 SLIFIGHHQNDNNETILFHFFRGIYIX--NLKGI-NFLTYFKNCLLYRPFIKLNKIHIYN 528 Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210 ++ W D SN R +R + Sbjct: 529 YMYAIQKKWKYDISNQKLHSSRNFIRNILIP 559 >gi|163843104|ref|YP_001627508.1| PP-loop domain-containing protein [Brucella suis ATCC 23445] gi|205830560|sp|B0CLF8|TTCA_BRUSI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gi|163673827|gb|ABY37938.1| PP-loop domain protein [Brucella suis ATCC 23445] Length = 293 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 28/196 (14%) Query: 7 ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62 +++ F ++V P +V +SGG DS AL L R ++ A+++D Sbjct: 43 QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95 Query: 63 RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114 + +++ D +R I H + + P+T + R + A Sbjct: 96 QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173 + + I+ H +D LET +M L+ M +L D L + RP Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207 Query: 174 REDIRSFLLQRNISWC 189 +D+ F Sbjct: 208 EDDLEKFANAMQFPII 223 >gi|190891996|ref|YP_001978538.1| hypothetical protein RHECIAT_CH0002406 [Rhizobium etli CIAT 652] gi|190697275|gb|ACE91360.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 290 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%) Query: 4 SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 + VR L L+ +SGG DS L+AL L R ++ A ++D Sbjct: 40 RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 98 Query: 61 CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112 + ++V D +R+ + H + + + + R + Sbjct: 99 G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154 Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172 A+ ++ H +D LET +M G S + + +L + RP Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210 Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227 +D+ F + D + D +R ++ + DI+ K + L Sbjct: 211 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 266 >gi|148270897|ref|YP_001245357.1| ExsB family protein [Thermotoga petrophila RKU-1] gi|147736441|gb|ABQ47781.1| ExsB family protein [Thermotoga petrophila RKU-1] Length = 268 Score = 66.9 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 43/194 (22%) Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65 + +R + +L ++V SGG DS L H L + S A+++D Sbjct: 1 MSKIRKILEALKEKKKVVVMFSGGVDSTLLAKLTHEALGENS------VALTID------ 48 Query: 66 A----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAK 115 + + E+ + + I H + K + + R+ R +++ AK Sbjct: 49 SPVIPRKEIEKAKRLAGLIGIRHEFIELNELKSRHLIENPPDRCYLCRKLRDSVVKNWAK 108 Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--R 173 +I F D L + I PF+ Sbjct: 109 EHGFEVIADGLNFSD-------------------LQDYRPGVKASTEDGIWHPFIEFEVT 149 Query: 174 REDIRSFLLQRNIS 187 +E+IR F + ++ Sbjct: 150 KEEIRDFSRKLSLP 163 >gi|217077353|ref|YP_002335071.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B] gi|217037208|gb|ACJ75730.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B] Length = 289 Score = 66.5 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 10 RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS----DRSFGKIKFSAISVDHCLRET 65 +F + + +LVA+SGG DS+ +