RPSBLAST alignment of GI: 254780546 and protein with PDBid: 3a2k

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464
 Score = 88.2 bits (217), Expect = 3e-18
 Identities = 83/371 (22%), Positives = 127/371 (34%), Gaps = 28/371 (7%)

Query: 6   IESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+    L+   A ++V VSGG DS+ LL    S+   R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI                  G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG                ++ RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY---AGIPVKRPFHGGYLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKV 230
            ++  Q  +S   DPSN  D + R R R  +  +         ++FQ            +
Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
               A  + K +    R         L +   L   +L++      G +           
Sbjct: 236 EELAADALNKVMEKQHRDAALSIGPFLELPRPLQRRVLQLLLLRLYGGVPPTLTSVHIGH 295

Query: 291 MLFLKSGKRGCVSI----GRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQ 343
           +L L    R    I    G  VI      L+   A             P    + +G   
Sbjct: 296 ILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTFDAESGEKGYWFELPVPALLPLPNGYAI 355

Query: 344 FQNLSDSLIQI 354
                +   + 
Sbjct: 356 ISEFGEHYPRK 366