RPSBLAST alignment of GI: 254780546 and protein with PDBid: 3a2k
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464
Score = 88.2 bits (217), Expect = 3e-18
Identities = 83/371 (22%), Positives = 127/371 (34%), Gaps = 28/371 (7%)
Query: 6 IESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
I+ VR F+ L+ A ++V VSGG DS+ LL S+ R K++ A VDH
Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58
Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
R +++E+ +V C RI G AAR RY +E +
Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118
Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
A + H DDQ+ET+ MR R KG ++ RPFL R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY---AGIPVKRPFHGGYLIRPFLAVSRAEI 175
Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKV 230
++ Q +S DPSN D + R R R + + ++FQ +
Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235
Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
A + K + R L + L +L++ G +
Sbjct: 236 EELAADALNKVMEKQHRDAALSIGPFLELPRPLQRRVLQLLLLRLYGGVPPTLTSVHIGH 295
Query: 291 MLFLKSGKRGCVSI----GRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQ 343
+L L R I G VI L+ A P + +G
Sbjct: 296 ILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTFDAESGEKGYWFELPVPALLPLPNGYAI 355
Query: 344 FQNLSDSLIQI 354
+ +
Sbjct: 356 ISEFGEHYPRK 366