RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] (423 letters) >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase, PP-type, PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433 Score = 133 bits (334), Expect = 1e-31 Identities = 72/341 (21%), Positives = 124/341 (36%), Gaps = 16/341 (4%) Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73 R L+ ILVA SGG DS LL L ++ + AI V H L A V + Sbjct: 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENP--GVALRAIHVHHGLSANADAWVTHC 65 Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133 +VC + ++ V + ++ G+ A AR+ARY + +++TA DDQ E Sbjct: 66 ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDDQCE 123 Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193 T + +R G + + RP L R ++ + Q ++ W ED S Sbjct: 124 TFLLALKRGS---GPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDES 180 Query: 194 NTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250 N DD ++R +R V + + L + + + L+ L Sbjct: 181 NQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQG 240 Query: 251 AISQDILNIDSTLL--FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308 + + S + R A S + + + + C+ +G Sbjct: 241 TLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFE 300 Query: 309 IDRRANFLWITRAVRNLPTLIL----YPEETTVWDGRYQFQ 345 I R + LW ++V I+ + + + G Q Sbjct: 301 IRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQ 341 >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317 Score = 95.8 bits (237), Expect = 2e-20 Identities = 62/309 (20%), Positives = 106/309 (34%), Gaps = 24/309 (7%) Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80 +L+A SGG DS+ L L + F + + +H LRE+A+ + + + Sbjct: 26 RVLIAFSGGVDSVVLTDVLLKLK--NYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83 Query: 81 RIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136 + V + + L A R RY + E ++ I TAH +D LET Sbjct: 84 NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143 Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196 + R G+ G I RP +R +I + + + W ED +N + Sbjct: 144 LFFTRGTGLDGL--IGFLPK-----EEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196 Query: 197 DRFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253 R R+R V L K + + K + Sbjct: 197 VSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLDV 256 Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313 + + L ++R I Y +E V L+ G + G+V+ R+ Sbjct: 257 KKLKEKPLALQRRVIR-------KFIGEKDYEKVELVRSLLEKGGEVNLGKGKVLK-RKE 308 Query: 314 NFLWITRAV 322 +L + V Sbjct: 309 RWLCFSPEV 317 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464 Score = 88.2 bits (217), Expect = 3e-18 Identities = 83/371 (22%), Positives = 127/371 (34%), Gaps = 28/371 (7%) Query: 6 IESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62 I+ VR F+ L+ A ++V VSGG DS+ LL S+ R K++ A VDH Sbjct: 2 IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58 Query: 63 R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117 R +++E+ +V C RI G AAR RY +E + Sbjct: 59 RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118 Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177 A + H DDQ+ET+ MR R KG ++ RPFL R +I Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY---AGIPVKRPFHGGYLIRPFLAVSRAEI 175 Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKV 230 ++ Q +S DPSN D + R R R + + ++FQ + Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235 Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290 A + K + R L + L +L++ G + Sbjct: 236 EELAADALNKVMEKQHRDAALSIGPFLELPRPLQRRVLQLLLLRLYGGVPPTLTSVHIGH 295 Query: 291 MLFLKSGKRGCVSI----GRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQ 343 +L L R I G VI L+ A P + +G Sbjct: 296 ILMLCERGRPSGMIDLPKGLKVIRSYDRCLFTFDAESGEKGYWFELPVPALLPLPNGYAI 355 Query: 344 FQNLSDSLIQI 354 + + Sbjct: 356 ISEFGEHYPRK 366 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 66.1 bits (161), Expect = 1e-11 Identities = 90/499 (18%), Positives = 141/499 (28%), Gaps = 221/499 (44%) Query: 4 SPIESV-RF--FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 +P E V +F +V SLV P+ + G L + L + + Sbjct: 56 TPAELVGKFLGYVSSLVEPSKV------GQFDQVLNLCLTEF--ENCY------------ 95 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------EARYALISEHA 114 L +D+ H++ + + T L+ AR Sbjct: 96 -LEG---------NDI-------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQ---RDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171 K N+ L + QL ++ Q DY E+ L + T Y + Sbjct: 139 KKSNSALFRAVGEGNAQLVAIF-GGQGNTDDYFEE---LRDLYQT--Y-------HVLVG 185 Query: 172 -------------CRREDIRSFLLQR--NI-SWCEDPSNTDDRFERVRVRRFVRDIDLHA 215 R + + NI W E+PSNT D +D Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-----------KD----- 229 Query: 216 LYLKMKKFQDLRVKVNNAVAM-LIP-----------KYLTVH---MRSIIAI----SQDI 256 YL ++ ++ LI K L +RS + SQ + Sbjct: 230 -YL-----------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277 Query: 257 LN---I---DS------------TLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLK 295 + I DS T+LF++ G R E L Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFI---------------GVRCYEAYPNTSLPPS 322 Query: 296 SGKRGCVSIGRVVIDRRAN-------FLWITRAVRNLP-----TLI------LYPEETTV 337 ++ D N L ++ NL + L P Sbjct: 323 -----------ILEDSLENNEGVPSPML----SISNLTQEQVQDYVNKTNSHL-PAG--- 363 Query: 338 WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL----APF 393 + + SL+ G ++ V SG PP + L+ K L PF Sbjct: 364 -------KQVEISLVN-GAKNL----VVSG-PP-QSLYGLNLTLRKAKAPSGLDQSRIPF 409 Query: 394 S----RFMTKFDLPVAYAF 408 S +F +F LPVA F Sbjct: 410 SERKLKFSNRF-LPVASPF 427 Score = 46.9 bits (111), Expect = 8e-06 Identities = 37/199 (18%), Positives = 59/199 (29%), Gaps = 55/199 (27%) Query: 99 MAAA--REARYALISEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCD 155 M A R L H + L+ TA F QL+ + + + E G + D Sbjct: 1 MDAYSTR----PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE---GFAAD-D 52 Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--------FERVRVRRF 207 L FL ++ D+ FE + Sbjct: 53 EPTTPAELVGK--FL--------GYVSSLV---EPSKVGQFDQVLNLCLTEFEN----CY 95 Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267 + D+HAL K+ + D + LI Y+ + I + ++ LF Sbjct: 96 LEGNDIHALAAKLLQENDTTLV---KTKELIKNYI----TARIMAKRPFDKKSNSALF-- 146 Query: 268 LRVSA--------AICGGQ 278 + AI GGQ Sbjct: 147 --RAVGEGNAQLVAIFGGQ 163 Score = 42.6 bits (100), Expect = 2e-04 Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 77/268 (28%) Query: 3 LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDH 60 +P E +RS L +G S GL+ +A+ S SF AI+V Sbjct: 258 FTPGE-----LRSY------LKGATG--HSQGLVTAVAIAETDSWESFFVSVRKAITV-- 302 Query: 61 CLRETAKDEVRYVSDVC----SRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHA 114 L VR C + S++ S +N++ M + + ++ Sbjct: 303 -LFFIG---VR-----CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353 Query: 115 KTINATLIMTAHTFDDQLETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWI------ 165 N+ L V + ++ G S LY LNL + Sbjct: 354 NKTNSHLPAGKQ--------VEISLVNGAKNLVVSGPPQS------LYGLNLTLRKAKAP 399 Query: 166 -----SR-PFLRCRREDIR-SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHA 215 SR PF R+ FL ++ P ++ + + ++ +A Sbjct: 400 SGLDQSRIPF-SERKLKFSNRFL---PVA---SPFHSHLLVPASDLINKDLVKNNVSFNA 452 Query: 216 LYLKMKKF-----QDLRVKVNNAVAMLI 238 +++ + DLRV + ++ Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIV 480 Score = 29.9 bits (67), Expect = 1.1 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 14 RSLVYPA-HILVAVSGGSDSMGLLIA 38 + + A HIL GG+ +G+L Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTH 517 >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203 Score = 65.1 bits (158), Expect = 3e-11 Identities = 24/215 (11%), Positives = 54/215 (25%), Gaps = 38/215 (17%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 + V SGG DS + L + I+++ + + K L Sbjct: 9 VHVLFSGGKDSSLSAVILKKL-------GYNPHLITINFGVIPSYKLAEE----TAKILG 57 Query: 82 IAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132 H V++ + A + ++ A + + DD++ Sbjct: 58 FKHKVITLDRKIVEKAADMIIEHKYPGPAIQYVHKTVLEILADEYSI--LADGTRRDDRV 115 Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192 + + + P + + +R L E Sbjct: 116 PKLSYSEIQSLEMRKNI--------------QYITPLMGFGYKTLR-HLASEFFILEEIK 160 Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDL 226 S T + +R +++ + Q Sbjct: 161 SGTKLSSDYEAEIRHILKERGESPEKYFPEHKQTR 195 >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Length = 380 Score = 34.7 bits (79), Expect = 0.044 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 40/216 (18%) Query: 22 ILVAVSGGSDSM---GLL-------IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 ++V +SGG DS LL L + G+ ++C TA ++ Sbjct: 20 VIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE--------EYC---TAAADLA 68 Query: 72 YVSDVCSRLRIAHSVV----------------SWKNSKPQTGLMAAAREARYALISEHA- 114 VC +L I V +K + + +E ++ E A Sbjct: 69 DAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAA 128 Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174 + + A I T H R R + S T+ ++ P + Sbjct: 129 EDLGADYIATGHYVRRADVDGKSRLLRG-LDSNKDQSYFLYTLSHEQIAQSLFPVGELEK 187 Query: 175 EDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFVR 209 +R + + +T + R F+ Sbjct: 188 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLG 223 >3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} Length = 219 Score = 33.1 bits (75), Expect = 0.11 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 9/70 (12%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 +V SGG DS L+ + F +++ ++ + R EV + +L Sbjct: 6 AIVVFSGGQDSTTCLLWAL-----KEFEEVE--TVTFHYNQRH--SQEVEVAKSIAEKLG 56 Query: 82 IAHSVVSWKN 91 + + ++ Sbjct: 57 VKNHLLDMSL 66 >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A Length = 308 Score = 32.8 bits (74), Expect = 0.17 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 15/135 (11%) Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70 +R V + ++A+SGG DS + H + DR A+ V+ R+ + V Sbjct: 13 EIRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLH------AVFVNTGFLRKGEPEFV 66 Query: 71 RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------LISEHAKTINATLIM 123 + + H V + + E R + E AK I A ++ Sbjct: 67 VKTFRDEFGMNL-HYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLI 125 Query: 124 TAHTFDDQLETVYMR 138 D +E+ Sbjct: 126 QGTIAPDWIESQGKI 140 >2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Length = 376 Score = 32.4 bits (73), Expect = 0.19 Identities = 21/126 (16%), Positives = 36/126 (28%), Gaps = 26/126 (20%) Query: 22 ILVAVSGGSDSM---GLL-------IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71 ++V +SGG DS LL I + D + C TA ++ + Sbjct: 12 VVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEN--------GVC---TATEDYK 60 Query: 72 YVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126 V V ++ I + V W A + + + + A Sbjct: 61 DVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAI 120 Query: 127 TFDDQL 132 T Sbjct: 121 TLGADY 126 >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 Length = 413 Score = 30.8 bits (69), Expect = 0.65 Identities = 20/128 (15%), Positives = 34/128 (26%), Gaps = 20/128 (15%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++V +SGG DS + A+ T++ + V D+ L Sbjct: 190 VMVLLSGGIDSPVAAYLTMKR-------GVSVEAVHFHSPPF-TSERAKQKVIDLAQELT 241 Query: 82 IAHSVV------------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129 V + P + M R + A+ NA I T + Sbjct: 242 KYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLG 301 Query: 130 DQLETVYM 137 Sbjct: 302 QVASQTLD 309 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.6 bits (68), Expect = 0.72 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 24/124 (19%) Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232 ++E I+ +++ ++ E T ++F+ + +D+ ++ + + VK+ Sbjct: 919 KKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDK----VDI----FEIPETGEYSVKLLK 970 Query: 233 AVAMLIPKYLTVHMRSIIA-------------ISQDILN-IDSTLLFYLLRVSAAICGGQ 278 + IPK L ++A IS DI++ +D LF L+ V A Sbjct: 971 GATLYIPKAL--RFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASG 1028 Query: 279 ISLP 282 I+ P Sbjct: 1029 ITDP 1032 >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A Length = 268 Score = 27.2 bits (59), Expect = 7.0 Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 21/200 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 ++ +SGG DS A+ VL + F + +A ++ + + ++C + Sbjct: 28 VVYGLSGGLDS-----AVVGVLCQKVFKE---NAHALLMPSSVSMPENKTDALNLCEKFS 79 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141 I ++ S A A L M + Sbjct: 80 IPYTEYSIAP------YDAIFSSHFKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTS 133 Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRF 199 + +E+ +G + + +N + NI P + D Sbjct: 134 NKSERMLGYGTLFGDLACAINPIGELFKTEVYE-----LARRLNIPKKILNKPPSADLFV 188 Query: 200 ERVRVRRFVRDIDLHALYLK 219 + + + LK Sbjct: 189 GQSDEKDLGYPYSVIDPLLK 208 >2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Length = 306 Score = 26.8 bits (58), Expect = 9.0 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 19/174 (10%) Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81 I + +GG D LL+ S L + F K + ++ + + S RL Sbjct: 56 ISFSYNGGKDCQVLLLLYLSCLWEYFFIK------------AQNSQFDFEFQSFPMQRLP 103 Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS-- 139 P RY L ++ + + A F D ++ Sbjct: 104 TVFIDQEETF--PTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAI 161 Query: 140 ---QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190 R G L + T + +P L +I SFLL N C Sbjct: 162 VIGIRHTDPFGEALKPIQRTDSNWPDFMRLQPLLHWDLTNIWSFLLYSNEPICG 215 >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Length = 325 Score = 26.7 bits (58), Expect = 9.2 Identities = 26/201 (12%), Positives = 51/201 (25%), Gaps = 23/201 (11%) Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRE 64 ES+ + ++ S G DS + LH GK+ F + VD +E Sbjct: 34 ESIHIIREVAAEFDNPVMLYSIGKDSAVM---LHLARKAFFPGKLPFPVMHVDTRWKFQE 90 Query: 65 TAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINA 119 R+ + + + + P T A + + A + Sbjct: 91 M----YRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 146 Query: 120 TLIMTAHTFDDQ---------LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170 D+ + + D + L + + + P Sbjct: 147 FDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLS 206 Query: 171 RCRREDIRSFLLQRNISWCED 191 DI ++ I Sbjct: 207 NWTELDIWQYIYLEGIPIVPL 227 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.139 0.415 Gapped Lambda K H 0.267 0.0530 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,601,926 Number of extensions: 167674 Number of successful extensions: 496 Number of sequences better than 10.0: 1 Number of HSP's gapped: 482 Number of HSP's successfully gapped: 21 Length of query: 423 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 328 Effective length of database: 3,390,050 Effective search space: 1111936400 Effective search space used: 1111936400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 58 (26.6 bits)