RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780546|ref|YP_003064959.1| hypothetical protein
CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
(423 letters)
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 93.9 bits (232), Expect = 2e-20
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 13/192 (6%)
Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
+L+A SGG DS+ L L + + S ++ + +H LRE+A+ + + +
Sbjct: 26 RVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAH--FNHMLRESAERDEEFCKEFAKER 83
Query: 80 ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
+ + V + + L A R RY + E ++ I TAH +D LET
Sbjct: 84 NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143
Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
+ G I RP +R +I + + + W ED +N +
Sbjct: 144 LFFT-------RGTGLDGLIGFLPKEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196
Query: 197 DRFERVRVRRFV 208
R R+R V
Sbjct: 197 VSIPRNRIRHRV 208
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 227
Score = 83.2 bits (204), Expect = 4e-17
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 7/197 (3%)
Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
R L+ ILVA SGG DS LL L ++ + AI V H L A V +
Sbjct: 8 RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENP--GVALRAIHVHHGLSANADAWVTHC 65
Query: 74 SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
+VC + ++ V + ++ G+ A+ + + + +++TA DDQ E
Sbjct: 66 ENVCQQWQVPLVVERVQLAQEGLGIE--AQARQARYQAFARTLLPGEVLVTAQHLDDQCE 123
Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
T + +R G+ + P L R ++ + Q ++ W ED S
Sbjct: 124 TFLLALKRGSGPAGLSAMAEVSEFAGTRLIR---PLLARTRGELVQWARQYDLRWIEDES 180
Query: 194 NTDDRFERVRVRRFVRD 210
N DD ++R +R V
Sbjct: 181 NQDDSYDRNFLRLRVVP 197
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 168
Score = 48.9 bits (115), Expect = 7e-07
Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 18/173 (10%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
+++A SGG D+ +L L A + ++ +
Sbjct: 4 VVLAYSGGLDTSVILKWLCEK-------GFDVIAYVANVGQKDDFVAIKEKALKTGASKV 56
Query: 82 IAHSVV-SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
+ + T L+ A L+ + + V +
Sbjct: 57 YVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGAT 116
Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-------REDIRSFLLQRNI 186
++ + NL + P+ R D+ ++ +++ I
Sbjct: 117 GKGNDQVR---FELTYAALNPNLKVISPWKDPEFLAKFKGRTDLINYAMEKGI 166
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 165
Score = 47.4 bits (111), Expect = 2e-06
Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 5/165 (3%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
I++A SGG D+ +L L I F+A E A+++ +
Sbjct: 3 IVLAYSGGLDTSIILKWLKETYRAEV---IAFTADIGQGEEVEEAREKALRTGASKAIAL 59
Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
P A S I L+ A + +
Sbjct: 60 DLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKG 119
Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
+ + + + + W R + R+++ ++ I
Sbjct: 120 NDQVRFELTAYALKPDIKVIAPW--REWSFQGRKEMIAYAEAHGI 162
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 41.8 bits (97), Expect = 1e-04
Identities = 19/190 (10%), Positives = 46/190 (24%), Gaps = 15/190 (7%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVCSR 79
++V +SGG DS + A+ E AK +V ++ ++
Sbjct: 7 VMVLLSGGIDSPVAAYLTMKR-------GVSVEAVHFHSPPFTSERAKQKVIDLAQELTK 59
Query: 80 LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
++ ++ Q + + + I +
Sbjct: 60 YCKRVTLHLVPFTEVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESL-- 117
Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
A + + + N + RP + + +I + D
Sbjct: 118 -GQVASQTLDSMHTIN---EVTNYPVIRPLITMDKLEIIKIAEEIGTYDISIRPYEDCCT 173
Query: 200 ERVRVRRFVR 209
+
Sbjct: 174 VFTPASPATK 183
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 188
Score = 38.8 bits (89), Expect = 8e-04
Identities = 17/170 (10%), Positives = 43/170 (25%), Gaps = 3/170 (1%)
Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
I +A SGG D+ L+ + + + + +
Sbjct: 13 IGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDC 72
Query: 82 IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRSQ 140
V + Y + + + T L+ + +
Sbjct: 73 RKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYK 132
Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISW 188
+ E+ + + L W+ F+ R ++ F++ +
Sbjct: 133 GNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDY 182
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/198 (11%), Positives = 46/198 (23%), Gaps = 19/198 (9%)
Query: 7 ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
ES+ + ++ S G DS + LH GK+ F + VD
Sbjct: 14 ESIHIIREVAAEFDNPVMLYSIGKDSAVM---LHLARKAFFPGKLPFPVMHVDTR--WKF 68
Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK----------PQTGLMAAAREARYALISEHAKT 116
++ R+ + + + + E + +H
Sbjct: 69 QEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFD 128
Query: 117 INATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
+ + D + L + + + P
Sbjct: 129 AAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNW 188
Query: 173 RREDIRSFLLQRNISWCE 190
DI ++ I
Sbjct: 189 TELDIWQYIYLEGIPIVP 206
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 28.9 bits (63), Expect = 0.87
Identities = 22/184 (11%), Positives = 57/184 (30%), Gaps = 5/184 (2%)
Query: 6 IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
I+ +R V +++ +SGG DS + LH + + + + +
Sbjct: 7 IDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQV 66
Query: 66 AKDEVRY--VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
+ ++ V + P+ R E K + +
Sbjct: 67 LDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLA 126
Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
+ D +E+ + + + K G ++ + + P ++++R L+
Sbjct: 127 QGTIYPDVIESAASATGKAHVIKSHHNVGGLPK---EMKMGLVEPLKELFKDEVRKIGLE 183
Query: 184 RNIS 187
+
Sbjct: 184 LGLP 187
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 28.0 bits (62), Expect = 1.8
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 4/120 (3%)
Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
I V GG I++ + + A + D L D R ++ +
Sbjct: 4 TIAVYDLGGG---TFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDS-RLINYLVEEF 59
Query: 81 RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
+ + + L AA +A+ L S +N I T + R++
Sbjct: 60 KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAK 119
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 27.5 bits (60), Expect = 2.1
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIR-SFLLQ 183
F Y+R A+K + L D I D +L LR R + R F L
Sbjct: 95 VQFQRPAWDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFL- 153
Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
+I + T + F + + + L + D
Sbjct: 154 -HIPFP-----TPEIFNALPTYDTLLEQLCDYDLLGFQTENDRL 191
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 26.7 bits (59), Expect = 3.4
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 22/101 (21%)
Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGL---MAAA------REARYA 108
H RE + +R+R H+VV+ W++ + + M A R +
Sbjct: 128 HGGREFGF--------IGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVC 179
Query: 109 LISEHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEK 146
++ + + T F + T +
Sbjct: 180 RFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNS 220
>d1kf6a3 d.168.1.1 (A:226-357) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 132
Score = 25.5 bits (55), Expect = 7.9
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
T L + ++ + + + P + + RD A
Sbjct: 9 TGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLGEPKNKYMELGPRDKVSQA 68
Query: 216 LYLKMKKFQDLRVKVNNAVAM----LIPKYLTVHMRSIIAISQDILNIDST 262
+ + +K + + V + L K L + I +++ + +D
Sbjct: 69 FWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPV 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.415
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,561,049
Number of extensions: 73036
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 16
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.0 bits)