BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] (423 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/423 (100%), Positives = 423/423 (100%) Query: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH Sbjct: 1 MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60 Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT Sbjct: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120 Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180 Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240 Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300 Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360 Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420 Query: 421 PFF 423 PFF Sbjct: 421 PFF 423 >gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 267 Score = 26.2 bits (56), Expect = 0.97, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222 F++ N+ EDPS+ D FER++ R D +H++ K Sbjct: 60 FMIPCNV---EDPSSMDLLFERIKERWETLDFVVHSIAFSDKN 99 >gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter asiaticus str. psy62] Length = 97 Score = 25.4 bits (54), Expect = 2.0, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 82 IAHSVVSWKNSKPQTGL 98 IAHS +W+ SKP+T L Sbjct: 55 IAHSSRAWRTSKPRTYL 71 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 43 LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76 + D SF S+I+V LR+ +E+R DV Sbjct: 127 IQDSSFAHAPTSSITVREALRDAIAEEMRRDKDV 160 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.326 0.139 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,916 Number of Sequences: 1233 Number of extensions: 10202 Number of successful extensions: 45 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 7 length of query: 423 length of database: 328,796 effective HSP length: 76 effective length of query: 347 effective length of database: 235,088 effective search space: 81575536 effective search space used: 81575536 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 40 (20.0 bits)