BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780546|ref|YP_003064959.1| hypothetical protein
CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
         (423 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH
Sbjct: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT
Sbjct: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF
Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK
Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG
Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR
Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420
           KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL
Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420

Query: 421 PFF 423
           PFF
Sbjct: 421 PFF 423


>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 267

 Score = 26.2 bits (56), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           F++  N+   EDPS+ D  FER++ R    D  +H++    K 
Sbjct: 60  FMIPCNV---EDPSSMDLLFERIKERWETLDFVVHSIAFSDKN 99


>gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 97

 Score = 25.4 bits (54), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 82 IAHSVVSWKNSKPQTGL 98
          IAHS  +W+ SKP+T L
Sbjct: 55 IAHSSRAWRTSKPRTYL 71


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 24.3 bits (51), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 43  LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + D SF     S+I+V   LR+   +E+R   DV
Sbjct: 127 IQDSSFAHAPTSSITVREALRDAIAEEMRRDKDV 160


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.139    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,916
Number of Sequences: 1233
Number of extensions: 10202
Number of successful extensions: 45
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 7
length of query: 423
length of database: 328,796
effective HSP length: 76
effective length of query: 347
effective length of database: 235,088
effective search space: 81575536
effective search space used: 81575536
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)