HHsearch alignment for GI: 254780547 and conserved domain: PRK06667

>PRK06667 motB flagellar motor protein MotB; Validated.
Probab=99.94  E-value=4.8e-27  Score=177.13  Aligned_cols=105  Identities=24%  Similarity=0.385  Sum_probs=92.6

Q ss_pred             CEEEEECCCCCCC-HHHHHHHHHHHHHHCC---CEEEEEEEEECCCCCC-----CCCCCHHHHHHHHHHHHHHHHCC-CC
Q ss_conf             1002204752243-2479999999843025---6058999972266533-----33200111337999999998528-98
Q gi|254780547|r   50 DSVFFDTSSYSIR-PADIQVLSNLGSWLEK---HDCDFLIEGHADELGS-----RNSSIALGLRRAYAVFNYFVARG-IS  119 (160)
Q Consensus        50 ~~v~F~~~s~~L~-~~~~~~L~~ia~~l~~---~~~~i~I~GhtD~~Gs-----~~yN~~LS~~RA~aV~~~L~~~G-i~  119 (160)
T Consensus       127 ~~~lF~~gsa~l~~~~~~~~l~~l~~il~~~~~~~~~I~VeGHTD~~pi~~~~~~~sNWeLSsaRA~~V~~~l~~~g~i~  206 (254)
T PRK06667        127 SDAFFYPGSADVKLEENRDLIQKLASFIGFLDLAGYNFRIEGHTDNVDVNPEGAWKSNWELSGARAVNMLEYILNYEDQS  206 (254)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             68561799731264748999999999998456757428999437877668788888628899999999999999817999


Q ss_pred             CEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf             60699997074489899878779842991899997
Q gi|254780547|r  120 ASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK  154 (160)
Q Consensus       120 ~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~  154 (160)
T Consensus       207 ~~rl~v~Gygd~~P~~~n~t~e~ra~NRRVeI~Il  241 (254)
T PRK06667        207 ESWFEVSGFGGSRPLATDDTPEGRAYNRRIDIVIL  241 (254)
T ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf             54599985458876899959668840897699995