HHsearch alignment for GI: 254780547 and conserved domain: PRK06667
>PRK06667 motB flagellar motor protein MotB; Validated.
Probab=99.94 E-value=4.8e-27 Score=177.13 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=92.6
Q ss_pred CEEEEECCCCCCC-HHHHHHHHHHHHHHCC---CEEEEEEEEECCCCCC-----CCCCCHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 1002204752243-2479999999843025---6058999972266533-----33200111337999999998528-98
Q gi|254780547|r 50 DSVFFDTSSYSIR-PADIQVLSNLGSWLEK---HDCDFLIEGHADELGS-----RNSSIALGLRRAYAVFNYFVARG-IS 119 (160)
Q Consensus 50 ~~v~F~~~s~~L~-~~~~~~L~~ia~~l~~---~~~~i~I~GhtD~~Gs-----~~yN~~LS~~RA~aV~~~L~~~G-i~ 119 (160)
T Consensus 127 ~~~lF~~gsa~l~~~~~~~~l~~l~~il~~~~~~~~~I~VeGHTD~~pi~~~~~~~sNWeLSsaRA~~V~~~l~~~g~i~ 206 (254)
T PRK06667 127 SDAFFYPGSADVKLEENRDLIQKLASFIGFLDLAGYNFRIEGHTDNVDVNPEGAWKSNWELSGARAVNMLEYILNYEDQS 206 (254)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 68561799731264748999999999998456757428999437877668788888628899999999999999817999
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf 60699997074489899878779842991899997
Q gi|254780547|r 120 ASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK 154 (160)
Q Consensus 120 ~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 154 (160)
T Consensus 207 ~~rl~v~Gygd~~P~~~n~t~e~ra~NRRVeI~Il 241 (254)
T PRK06667 207 ESWFEVSGFGGSRPLATDDTPEGRAYNRRIDIVIL 241 (254)
T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf 54599985458876899959668840897699995