HHsearch alignment for GI: 254780547 and conserved domain: PRK06742
>PRK06742 flagellar motor protein MotS; Reviewed.
Probab=99.96 E-value=5.4e-29 Score=188.38 Aligned_cols=106 Identities=23% Similarity=0.456 Sum_probs=97.6
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCC--CCCCHHHHHHHHHHHHHHHH-CCCCCEEE
Q ss_conf 31002204752243247999999984302560589999722665--333--32001113379999999985-28986069
Q gi|254780547|r 49 GDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL--GSR--NSSIALGLRRAYAVFNYFVA-RGISASRM 123 (160)
Q Consensus 49 ~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~--Gs~--~yN~~LS~~RA~aV~~~L~~-~Gi~~~ri 123 (160)
T Consensus 114 ~~~~lF~~Gsa~l~p~~~~~L~~la~~l~~~~~~I~I~GHTD~~pi~~~~~~sNWeLSsaRA~~V~r~l~~~~gi~~~rl 193 (225)
T PRK06742 114 VDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRL 193 (225)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 78777689843239669999999999996599708999967887666778886499999999999999998369993148
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf 9997074489899878779842991899997
Q gi|254780547|r 124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK 154 (160)
Q Consensus 124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 154 (160)
T Consensus 194 ~~~Gygd~~P~~~n~t~e~ra~NRRVeI~i~ 224 (225)
T PRK06742 194 AAVGYADTKPVVPNDSPQNWEKNRRVVIYIK 224 (225)
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf 9986557761799949446853796699983