HHsearch alignment for GI: 254780547 and conserved domain: PRK06742

>PRK06742 flagellar motor protein MotS; Reviewed.
Probab=99.96  E-value=5.4e-29  Score=188.38  Aligned_cols=106  Identities=23%  Similarity=0.456  Sum_probs=97.6

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC--CCC--CCCCHHHHHHHHHHHHHHHH-CCCCCEEE
Q ss_conf             31002204752243247999999984302560589999722665--333--32001113379999999985-28986069
Q gi|254780547|r   49 GDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL--GSR--NSSIALGLRRAYAVFNYFVA-RGISASRM  123 (160)
Q Consensus        49 ~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~--Gs~--~yN~~LS~~RA~aV~~~L~~-~Gi~~~ri  123 (160)
T Consensus       114 ~~~~lF~~Gsa~l~p~~~~~L~~la~~l~~~~~~I~I~GHTD~~pi~~~~~~sNWeLSsaRA~~V~r~l~~~~gi~~~rl  193 (225)
T PRK06742        114 VDNLIFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRL  193 (225)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             78777689843239669999999999996599708999967887666778886499999999999999998369993148


Q ss_pred             EEEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf             9997074489899878779842991899997
Q gi|254780547|r  124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFLK  154 (160)
Q Consensus       124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~  154 (160)
T Consensus       194 ~~~Gygd~~P~~~n~t~e~ra~NRRVeI~i~  224 (225)
T PRK06742        194 AAVGYADTKPVVPNDSPQNWEKNRRVVIYIK  224 (225)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf             9986557761799949446853796699983