HHsearch alignment for GI: 254780547 and conserved domain: PRK12799

>PRK12799 motB flagellar motor protein MotB; Reviewed.
Probab=99.79  E-value=5.1e-19  Score=130.63  Aligned_cols=102  Identities=22%  Similarity=0.326  Sum_probs=90.4

Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC----CCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEE-E
Q ss_conf             002204752243247999999984302560589999722665----33332-00111337999999998528986069-9
Q gi|254780547|r   51 SVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL----GSRNS-SIALGLRRAYAVFNYFVARGISASRM-K  124 (160)
Q Consensus        51 ~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~----Gs~~y-N~~LS~~RA~aV~~~L~~~Gi~~~ri-~  124 (160)
T Consensus       157 RPMF~~GSA~l~Py~rdIL~aIApvLn~vPNkIsISGHTDA~PYa~G~~gYSNWELSADRANAARReLvaGGm~e~KvlR  236 (424)
T PRK12799        157 RPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR  236 (424)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             97601277757889999999999998658983488631688555689988765622366687999999976898113678


Q ss_pred             EEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf             997074489899878779842991899997
Q gi|254780547|r  125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLK  154 (160)
Q Consensus       125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~  154 (160)
T Consensus       237 VvGmAst~~ld~~~p~--~PvNRRISIiVL  264 (424)
T PRK12799        237 VVGMASTMRLKEQASD--DPVNRRISILVL  264 (424)
T ss_pred             EEECCCCCCCCCCCCC--CCCCCEEEEEEE
T ss_conf             9851213414667999--854365789996