HHsearch alignment for GI: 254780547 and conserved domain: PRK12799
>PRK12799 motB flagellar motor protein MotB; Reviewed.
Probab=99.79 E-value=5.1e-19 Score=130.63 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=90.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC----CCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEE-E
Q ss_conf 002204752243247999999984302560589999722665----33332-00111337999999998528986069-9
Q gi|254780547|r 51 SVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL----GSRNS-SIALGLRRAYAVFNYFVARGISASRM-K 124 (160)
Q Consensus 51 ~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~----Gs~~y-N~~LS~~RA~aV~~~L~~~Gi~~~ri-~ 124 (160)
T Consensus 157 RPMF~~GSA~l~Py~rdIL~aIApvLn~vPNkIsISGHTDA~PYa~G~~gYSNWELSADRANAARReLvaGGm~e~KvlR 236 (424)
T PRK12799 157 RPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILR 236 (424)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 97601277757889999999999998658983488631688555689988765622366687999999976898113678
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCEEEEEEE
Q ss_conf 997074489899878779842991899997
Q gi|254780547|r 125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLK 154 (160)
Q Consensus 125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 154 (160)
T Consensus 237 VvGmAst~~ld~~~p~--~PvNRRISIiVL 264 (424)
T PRK12799 237 VVGMASTMRLKEQASD--DPVNRRISILVL 264 (424)
T ss_pred EEECCCCCCCCCCCCC--CCCCCEEEEEEE
T ss_conf 9851213414667999--854365789996