HHsearch alignment for GI: 254780547 and conserved domain: TIGR03350
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=99.96 E-value=3.4e-30 Score=195.34 Aligned_cols=113 Identities=21% Similarity=0.273 Sum_probs=102.9
Q ss_pred HHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC----CCCHHHHHHHHHHHHHHHHC
Q ss_conf 56787520310022047522432479999999843025605899997226653333----20011133799999999852
Q gi|254780547|r 41 QEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRN----SSIALGLRRAYAVFNYFVAR 116 (160)
Q Consensus 41 ~~~~~~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~Gs~~----yN~~LS~~RA~aV~~~L~~~ 116 (160)
T Consensus 21 ~~~v~l~l~~~~lF~~gsa~L~~~~~~~L~~va~~L~~~~~~I~I~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~ 100 (137)
T TIGR03350 21 GDRSVVRLRGDELFASGSAEVRADFEPLLDRIAKALAAVPGRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQG 100 (137)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999995798718899632098799999999999970998599999838987778775104679999999999999972
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf 8986069999707448989987877984299189999
Q gi|254780547|r 117 GISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFL 153 (160)
Q Consensus 117 Gi~~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i 153 (160)
T Consensus 101 Gi~~~rl~~~g~G~~~P~~~n~~~~~r~~NRRVEI~i 137 (137)
T TIGR03350 101 GVPAGRVRAEGRGDSEPIASNATAAGRAQNRRVEIDV 137 (137)
T ss_pred CCCHHEEEEEECCCCCCCCCCCCHHHHHHCCEEEEEC
T ss_conf 9972408997012778679993977997549089979