HHsearch alignment for GI: 254780547 and conserved domain: pfam09476
>pfam09476 Pilus_CpaD Pilus biogenesis CpaD protein (pilus_cpaD). Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=91.09 E-value=1.3 Score=24.09 Aligned_cols=77 Identities=10% Similarity=0.124 Sum_probs=55.8
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 04752243247999999984302-56058999972266533332001113379999999985289860699997074489
Q gi|254780547|r 55 DTSSYSIRPADIQVLSNLGSWLE-KHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYGKEMP 133 (160)
Q Consensus 55 ~~~s~~L~~~~~~~L~~ia~~l~-~~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P 133 (160)
T Consensus 45 ~~~~~~Lt~~qr~~l~~f~~~~~~~g~g~i~I~~Psg-----s~n~~aa~~~~~~ir~~l~~~Gv~~~~I~~~~y~~~~~ 119 (200)
T pfam09476 45 GPGRGGLTASQRARLAGFAARYGRRGAGPLVIDVPSG-----SPNARAASALSAEVRALLAAAGVPPSNISVRAYDAAGA 119 (200)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC-----CCCHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCC
T ss_conf 6888988999999999999998456886189975899-----86357899999999999998599843155422577787
Q ss_pred CCC
Q ss_conf 899
Q gi|254780547|r 134 SVY 136 (160)
Q Consensus 134 ~~~ 136 (160)
T Consensus 120 ~~~ 122 (200)
T pfam09476 120 RAP 122 (200)
T ss_pred CCC
T ss_conf 888