Query gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 160
No_of_seqs 126 out of 4755
Neff 8.2
Searched_HMMs 33803
Date Wed Jun 1 19:36:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780547.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2aiz_P Outer membrane protein 100.0 5.5E-31 1.6E-35 199.5 11.6 132 22-153 2-134 (134)
2 >3ldt_A Outer membrane protein 100.0 1.6E-30 4.6E-35 196.9 7.0 114 45-158 49-163 (169)
3 >2k1s_A Inner membrane lipopro 100.0 2.8E-30 8.4E-35 195.4 7.7 118 41-158 25-143 (149)
4 >3khn_A MOTB protein, putative 100.0 5.2E-29 1.5E-33 188.1 8.1 118 40-157 41-164 (174)
5 >2hqs_H Peptidoglycan-associat 100.0 7.4E-29 2.2E-33 187.2 8.8 110 46-155 2-112 (118)
6 >2zov_A Chemotaxis protein MOT 100.0 8.2E-29 2.4E-33 187.0 8.7 106 48-155 69-180 (210)
7 >2zf8_A MOTY, component of sod 100.0 6.2E-29 1.8E-33 187.7 6.6 112 46-157 4-117 (124)
8 >3cyp_B Chemotaxis protein MOT 100.0 4.9E-28 1.4E-32 182.5 11.1 107 50-156 3-116 (138)
9 >1r1m_A Outer membrane protein 100.0 3.5E-29 1E-33 189.1 4.2 110 46-155 11-121 (164)
10 >2zvy_A Chemotaxis protein MOT 99.9 1.6E-27 4.8E-32 179.5 11.3 106 48-155 58-169 (183)
11 >1krh_A Benzoate 1,2-dioxygena 64.1 8.9 0.00026 18.9 3.8 28 104-131 106-133 (133)
12 >2eg2_A Nitrogen regulatory pr 60.8 12 0.00037 18.0 4.9 54 103-156 10-68 (97)
13 >3cqy_A Anhydro-N-acetylmurami 58.9 9.7 0.00029 18.6 3.2 33 96-128 65-97 (190)
14 >1hwu_A PII protein; herbaspir 54.7 16 0.00047 17.4 4.6 55 102-156 9-68 (97)
15 >1gvh_A Flavohemoprotein; oxid 54.6 12 0.00037 18.0 3.2 33 102-134 111-143 (143)
16 >2j9c_A GLNK1, hypothetical ni 53.5 15 0.00045 17.5 3.4 54 103-156 12-70 (99)
17 >2cz4_A Hypothetical protein T 53.5 14 0.00041 17.8 3.2 51 101-155 32-83 (119)
18 >3dfe_A Putative PII-like sign 52.5 16 0.00048 17.3 3.5 53 101-153 13-67 (111)
19 >3il6_A 3-oxoacyl-[acyl-carrie 50.4 18 0.00054 17.1 3.5 37 106-142 23-59 (138)
20 >1qy7_A Nitrogen regulatory pr 45.6 15 0.00045 17.5 2.5 54 102-155 9-67 (96)
21 >1tgl_A Triacyl-glycerol acylh 44.8 23 0.00068 16.5 5.2 56 70-138 124-182 (269)
22 >2r6h_A NADH:ubiquinone oxidor 43.1 19 0.00056 17.0 2.6 26 104-129 114-139 (139)
23 >3ce8_A Putative PII-like nitr 42.6 25 0.00073 16.3 3.7 56 101-156 30-88 (120)
24 >2gpj_A Siderophore-interactin 42.0 25 0.00075 16.2 3.2 25 104-128 94-119 (122)
25 >3bzq_A Nitrogen regulatory pr 40.5 27 0.00079 16.1 3.6 55 102-156 11-70 (99)
26 >1yj7_A ESCJ; mixed alpha/beta 40.1 23 0.00067 16.5 2.6 25 100-124 8-32 (68)
27 >3gwa_A 3-oxoacyl-(acyl-carrie 39.0 19 0.00056 16.9 2.1 68 83-157 34-108 (168)
28 >3iib_A Peptidase M28; YP_9267 38.0 29 0.00087 15.9 6.4 75 80-154 87-167 (282)
29 >3jy6_A Transcriptional regula 37.5 30 0.00088 15.8 4.0 82 51-132 19-114 (117)
30 >3iol_B Glucagon; receptor-lig 34.5 17 0.0005 17.3 1.2 28 88-115 1-28 (31)
31 >2o66_A PII protein; regulatio 34.3 34 0.001 15.5 5.3 56 101-156 20-81 (110)
32 >1xpj_A Hypothetical protein; 34.2 34 0.001 15.5 7.0 72 52-127 4-87 (126)
33 >1tvc_A Methane monooxygenase 33.3 32 0.00094 15.7 2.5 27 104-130 107-133 (137)
34 >2hcn_A RNA-directed RNA polym 30.4 35 0.001 15.5 2.3 81 59-141 16-134 (158)
35 >2gw8_A PII signal transductio 29.7 40 0.0012 15.1 5.5 55 102-156 11-70 (114)
36 >3dzc_A UDP-N-acetylglucosamin 29.0 41 0.0012 15.0 4.2 80 52-131 83-199 (211)
37 >1ujc_A Phosphohistidine phosp 28.6 42 0.0013 14.9 5.3 21 104-124 29-49 (161)
38 >1cqx_A Flavohemoprotein; glob 27.4 41 0.0012 15.0 2.2 27 105-131 113-139 (143)
39 >3g85_A Transcriptional regula 27.1 45 0.0013 14.8 2.6 35 101-135 85-121 (134)
40 >3ite_A SIDN siderophore synth 27.1 45 0.0013 14.8 3.6 25 103-127 5-29 (113)
41 >3b64_A Macrophage migration i 26.3 46 0.0014 14.7 5.3 67 61-127 15-99 (103)
42 >3beo_A UDP-N-acetylglucosamin 25.9 39 0.0012 15.1 1.9 23 106-128 158-180 (211)
43 >1k7w_A Delta 2 crystallin; ey 25.5 41 0.0012 15.0 2.0 16 106-121 3-18 (56)
44 >2dch_X Putative homing endonu 25.4 43 0.0013 14.9 2.0 62 57-123 8-69 (72)
45 >1tia_A Lipase; hydrolase(carb 24.8 50 0.0015 14.5 6.1 54 70-138 125-179 (279)
46 >3lma_A Stage V sporulation pr 24.5 50 0.0015 14.5 2.3 75 50-124 25-121 (164)
47 >1jrj_A Exendin-4; Trp-CAGE, G 23.7 38 0.0011 15.2 1.5 28 88-115 1-28 (39)
48 >2fqx_A Membrane lipoprotein T 22.3 41 0.0012 15.0 1.4 32 101-132 86-117 (137)
49 >3e53_A Fatty-acid-COA ligase 22.0 57 0.0017 14.2 3.1 22 104-125 6-27 (144)
50 >3kjx_A Transcriptional regula 20.8 60 0.0018 14.1 3.6 83 50-132 18-118 (132)
51 >1zow_A 3-oxoacyl-[acyl-carrie 20.7 60 0.0018 14.1 3.5 17 102-118 114-130 (170)
52 >1wfy_A Regulator of G-protein 20.5 22 0.00065 16.6 -0.3 45 107-152 42-86 (104)
53 >2g49_C Glucagon preproprotein 20.5 57 0.0017 14.2 1.9 28 88-115 1-28 (29)
54 >1lgy_A Lipase, triacylglycero 20.3 61 0.0018 14.0 7.0 62 79-153 135-200 (269)
55 >2vk2_A YTFQ, ABC transporter 20.1 62 0.0018 14.0 4.6 30 102-131 91-121 (142)
No 1
>>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:)
Probab=99.97 E-value=5.5e-31 Score=199.54 Aligned_cols=132 Identities=32% Similarity=0.524 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCH
Q ss_conf 56666656655444420125678752031002204752243247999999984302560-58999972266533332001
Q gi|254780547|r 22 DNLDTKISSPDTVLNESSLQEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIA 100 (160)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~ 100 (160)
..........................+...|+|++||+.|++++++.|+.++.+|++++ ..|.|+||||..|+.+||+.
T Consensus 2 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~F~~~s~~l~~~~~~~L~~~a~~l~~~p~~~i~I~Ghtd~~g~~~~N~~ 81 (134)
T 2aiz_P 2 SSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIA 81 (134)
T ss_dssp CCCCCSSSSCSCSCCBTTBCHHHHTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHH
T ss_conf 69888766577776666425999960588088059980049889999999999998699848999731243433210125
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEE
Q ss_conf 11337999999998528986069999707448989987877984299189999
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFL 153 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i 153 (160)
||++||.+|++||++.|++++||.+.|||+++|++++++++++++||||||+.
T Consensus 82 LS~~RA~aV~~~l~~~g~~~~ri~~~g~G~~~p~~~~~~~~~~~~NRRVei~~ 134 (134)
T 2aiz_P 82 LGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAX 134 (134)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEECTTTSCSSCSCSHHHHHHHSEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEEC
T ss_conf 78999999999999708753203457634437788891977875339899959
No 2
>>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} (A:)
Probab=99.96 E-value=1.6e-30 Score=196.93 Aligned_cols=114 Identities=22% Similarity=0.250 Sum_probs=106.6
Q ss_pred HHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 752031002204752243247999999984302560-5899997226653333200111337999999998528986069
Q gi|254780547|r 45 SSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRM 123 (160)
Q Consensus 45 ~~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160)
...+...+||++||+.|+++++..|+.++.+|+.++ .+|.|+||||..|+.+||+.||++||.+|++||++.|++++||
T Consensus 49 ~i~~~~~v~F~~~s~~l~~~~~~~L~~la~~l~~~p~~~i~I~Ghtd~~g~~~~n~~LS~~RA~aV~~~L~~~Gi~~~ri 128 (169)
T 3ldt_A 49 TLIIPTDKYFXFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETXXTFLWANGIAAKRL 128 (169)
T ss_dssp EEEEETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTE
T ss_pred EEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf 99906882570896326988999999999999978995799999728989766757799999999999999859998998
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECCC
Q ss_conf 99970744898998787798429918999971368
Q gi|254780547|r 124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRA 158 (160)
Q Consensus 124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~~~ 158 (160)
.+.|||+++|++++++++++++||||||+|.+-.+
T Consensus 129 ~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 163 (169)
T 3ldt_A 129 KAEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSEG 163 (169)
T ss_dssp EECCTTCTTSCCCTTTSCGGGGTSEEEEEEECCCC
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCC
T ss_conf 99997566767999297899854988999996898
No 3
>>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:)
Probab=99.96 E-value=2.8e-30 Score=195.44 Aligned_cols=118 Identities=23% Similarity=0.356 Sum_probs=108.2
Q ss_pred HHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5678752031002204752243247999999984302560-589999722665333320011133799999999852898
Q gi|254780547|r 41 QEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGIS 119 (160)
Q Consensus 41 ~~~~~~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~ 119 (160)
.+.....+...++|++||+.|++++...|+.++.+|+.++ .+|.|+||||..|+..|||.||++||++|++||.+.|++
T Consensus 25 ~~~~~i~~~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~l~~~gv~ 104 (149)
T 2k1s_A 25 GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVD 104 (149)
T ss_dssp TTEEEEEEEHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999984786066599733698999999988777731887520102241354454332017889999999999981997
Q ss_pred CEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECCC
Q ss_conf 606999970744898998787798429918999971368
Q gi|254780547|r 120 ASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRA 158 (160)
Q Consensus 120 ~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~~~ 158 (160)
+++|.+.|||+.+|++++++++++++||||||+|....-
T Consensus 105 ~~ri~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~~ 143 (149)
T 2k1s_A 105 ASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPLLE 143 (149)
T ss_dssp GGGEEEEECTTTCCSSCSSSHHHHHHHSEEEEEEEECSS
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCH
T ss_conf 663358996565766899397789744969999961514
No 4
>>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} (A:)
Probab=99.96 E-value=5.2e-29 Score=188.10 Aligned_cols=118 Identities=21% Similarity=0.350 Sum_probs=106.6
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCC-----CCCCCCHHHHHHHHHHHHHH
Q ss_conf 2567875203100220475224324799999998430256-05899997226653-----33320011133799999999
Q gi|254780547|r 40 LQEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELG-----SRNSSIALGLRRAYAVFNYF 113 (160)
Q Consensus 40 ~~~~~~~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~G-----s~~yN~~LS~~RA~aV~~~L 113 (160)
..+.....++..++|++||+.|+++++..|..++.+|+.+ ..+|.|+||||+.| +.+|||.||++||.+|+.||
T Consensus 41 ~~~~~~i~~~~~~~F~~gs~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~g~~~~~~~~~n~~LS~~RA~~V~~~l 120 (174)
T 3khn_A 41 DEGVITLRVPSEVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRYF 120 (174)
T ss_dssp ETTEEEEEEEHHHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCTTSSCSSHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 39989999468732469974029889999999987540387429999740367666556643201368899999999999
Q ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECC
Q ss_conf 85289860699997074489899878779842991899997136
Q gi|254780547|r 114 VARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCR 157 (160)
Q Consensus 114 ~~~Gi~~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~~ 157 (160)
...|+++.||.+.|||+++|+.+++++.++++||||||+|.--.
T Consensus 121 ~~~gi~~~ri~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~~ 164 (174)
T 3khn_A 121 LGAGIEPARLTATGLGELDPLFPNTSDENRARNRRVEFVLERRV 164 (174)
T ss_dssp HHTTCCGGGEEEEEEETSSCSSCSSSHHHHHHHSEEEEEEEC--
T ss_pred HHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECC
T ss_conf 87147866679998424577799939789987396899998545
No 5
>>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:)
Probab=99.96 E-value=7.4e-29 Score=187.24 Aligned_cols=110 Identities=42% Similarity=0.680 Sum_probs=104.4
Q ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5203100220475224324799999998430256-058999972266533332001113379999999985289860699
Q gi|254780547|r 46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMK 124 (160)
Q Consensus 46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~ 124 (160)
+.++..+||++||+.|+++++..|+.++.+|+.+ ..+|.|+||||..|+..||+.||++||.+|++||...|+++++|.
T Consensus 2 i~l~~~v~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~n~~LS~~RA~aV~~~l~~~g~~~~ri~ 81 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQIS 81 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 66799999409986459889999999999997699948999842332321036665889988768999997598434069
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 9970744898998787798429918999971
Q gi|254780547|r 125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
+.|||+.+|++++++++++++||||||++..
T Consensus 82 ~~g~G~~~p~~~~~~~~~~~~nRRVei~i~~ 112 (118)
T 2hqs_H 82 IVSYGKEKPAVLGHDEAAYSKNRRAVLVYLE 112 (118)
T ss_dssp EEECTTSSCSSCCSSHHHHHHHSEEEEECC-
T ss_pred EEECCCCCCCCCCCCHHHHHHCCCEEEEEEE
T ss_conf 9982553778889197899764979999998
No 6
>>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} (A:)
Probab=99.95 E-value=8.2e-29 Score=186.97 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=97.8
Q ss_pred HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC-----CCCCCCCHHHHHHHHHHHHHHHH-CCCCCE
Q ss_conf 031002204752243247999999984302560589999722665-----33332001113379999999985-289860
Q gi|254780547|r 48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL-----GSRNSSIALGLRRAYAVFNYFVA-RGISAS 121 (160)
Q Consensus 48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~-----Gs~~yN~~LS~~RA~aV~~~L~~-~Gi~~~ 121 (160)
+...++|++||+.|++++...|+.++.+|+.++.+|.|+||||+. |+..|||.||++||++|++||+. .||+++
T Consensus 69 ~~~~i~F~~~sa~l~~~~~~~l~~ia~~l~~~~~~i~I~GhtD~~~~~~~G~~~~N~~LS~~RA~aV~~~L~~~~gi~~~ 148 (210)
T 2zov_A 69 SQNRPXFKTGSAEVEPYXRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGK 148 (210)
T ss_dssp CSSSCSBCTTSCCBCHHHHHHHHHHHHHHTTSCCCEEEEEEEECSCCCSSCSSCCHHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 89984869997446987999999999999833866999985487764457764205789999999999999985998035
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 6999970744898998787798429918999971
Q gi|254780547|r 122 RMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 122 ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
||.+.|||+++|++++. .++++||||||+|-.
T Consensus 149 ri~~~g~G~~~p~~~n~--~~~~~NRRVeI~i~~ 180 (210)
T 2zov_A 149 VLRVVGXAATXRLSDRG--PDDAINRRISLLVLN 180 (210)
T ss_dssp EEEEEEECCC-----------CCCEEEEEEEEEC
T ss_pred EEEEEEECCCCCCCCCC--CCHHHCCCEEEEEEC
T ss_conf 89999868887899899--645872988999978
No 7
>>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278)
Probab=99.95 E-value=6.2e-29 Score=187.67 Aligned_cols=112 Identities=22% Similarity=0.354 Sum_probs=104.2
Q ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EE-EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 5203100220475224324799999998430256-05-899997226653333200111337999999998528986069
Q gi|254780547|r 46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DC-DFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRM 123 (160)
Q Consensus 46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~-~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160)
..+...++|++|++.|+++++..|+.++.+|+.+ +. .|.|+||||..|+.+||+.||.+||.+|++||+..||++++|
T Consensus 4 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~ri 83 (124)
T 2zf8_A 4 DIAFTILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRI 83 (124)
T ss_dssp TSEEEECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSE
T ss_pred HEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHE
T ss_conf 50152899389971169999999999999998689965899998748999878879999999999999999859997998
Q ss_pred EEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECC
Q ss_conf 9997074489899878779842991899997136
Q gi|254780547|r 124 KVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCR 157 (160)
Q Consensus 124 ~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~~ 157 (160)
.+.|||+.+|++++.+++++++||||||+|..-.
T Consensus 84 ~~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~ 117 (124)
T 2zf8_A 84 QVQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 117 (124)
T ss_dssp ECCEEC------------------CEEEECCCCC
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEE
T ss_conf 9999756577799949889973498999998679
No 8
>>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* (B:)
Probab=99.95 E-value=4.9e-28 Score=182.49 Aligned_cols=107 Identities=20% Similarity=0.357 Sum_probs=100.6
Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 10022047522-43247999999984302560--589999722665----333320011133799999999852898606
Q gi|254780547|r 50 DSVFFDTSSYS-IRPADIQVLSNLGSWLEKHD--CDFLIEGHADEL----GSRNSSIALGLRRAYAVFNYFVARGISASR 122 (160)
Q Consensus 50 ~~v~F~~~s~~-L~~~~~~~L~~ia~~l~~~~--~~i~I~GhtD~~----Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~r 122 (160)
+.|||++||++ |++++++.|+.++.+|+.++ .+|.|+||||+. |+.+|||.||.+||++|+.||+.+||++++
T Consensus 3 ~~v~F~~~ss~~l~~~~~~~l~~ia~~l~~~~~~~~I~I~GhtD~~~~~~g~~~~N~~LS~~RA~~V~~~l~~~gi~~~r 82 (138)
T 3cyp_B 3 DPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ 82 (138)
T ss_dssp CCEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 86663899624339989999999999999689970899998608988777870779999999999999999985999565
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEEC
Q ss_conf 9999707448989987877984299189999713
Q gi|254780547|r 123 MKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGC 156 (160)
Q Consensus 123 i~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~~ 156 (160)
|.+.|||+.+|++++++++++++||||||+|..-
T Consensus 83 i~~~g~G~~~p~~~~~~~~~~~~NRRVei~i~~~ 116 (138)
T 3cyp_B 83 LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTD 116 (138)
T ss_dssp EEEEECTTCSCSSCTTSHHHHHHHSEEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCCHHHHHHCCCEEEEEECC
T ss_conf 9999845567679993978997249689999708
No 9
>>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} (A:)
Probab=99.95 E-value=3.5e-29 Score=189.13 Aligned_cols=110 Identities=27% Similarity=0.338 Sum_probs=103.3
Q ss_pred HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCE-EEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 52031002204752243247999999984302560-58999972266533332001113379999999985289860699
Q gi|254780547|r 46 SSVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHD-CDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMK 124 (160)
Q Consensus 46 ~~~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~-~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~ 124 (160)
+.+...+||++||+.|+++++..|+.++.+|+.++ .+|.|.||||..|+..||+.||++||.+|++||+..|++++||.
T Consensus 11 i~l~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ghtd~~g~~~~N~~LS~~RA~aV~~~L~~~gi~~~ri~ 90 (164)
T 1r1m_A 11 ISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRIS 90 (164)
T ss_dssp EEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred EEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 99777335518972269899999999999997789818999997389898557079999999999999998599989989
Q ss_pred EEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 9970744898998787798429918999971
Q gi|254780547|r 125 VTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 125 ~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
+.|||+++|++++.+++++++||||||++..
T Consensus 91 ~~g~G~~~P~~~~~~~~~~~~NRRVei~~~~ 121 (164)
T 1r1m_A 91 AVGLGESQAQMTQVCEAEVAKLGAKVSKAKK 121 (164)
T ss_dssp EEECTTTTCCCHHHHHHHHHTCCSSCCSSHH
T ss_pred EEEECCCCCCCCCCCHHHHHHCCCCCHHHCC
T ss_conf 9987676888989797898531441000000
No 10
>>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A (A:)
Probab=99.95 E-value=1.6e-27 Score=179.46 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=98.4
Q ss_pred HCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC-----CCCCCCCHHHHHHHHHHHHHHHH-CCCCCE
Q ss_conf 031002204752243247999999984302560589999722665-----33332001113379999999985-289860
Q gi|254780547|r 48 VGDSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADEL-----GSRNSSIALGLRRAYAVFNYFVA-RGISAS 121 (160)
Q Consensus 48 ~~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~-----Gs~~yN~~LS~~RA~aV~~~L~~-~Gi~~~ 121 (160)
....++|++||+.|+++++..|+.++.+|+.++.+|.|+||||+. |+..|||.||++||++|++||++ .|++++
T Consensus 58 ~~~~i~F~~~sa~l~~~~~~~l~~la~~l~~~~~~i~I~Ghtd~~~~~~~g~~~~N~~LS~~RA~aV~~~L~~~~gi~~~ 137 (183)
T 2zvy_A 58 SQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGK 137 (183)
T ss_dssp CSSSCSBCTTCCSBCHHHHHHHHHHHHHHTTSCCCEEEEEECCSSCTTCSTTSSCHHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78886868998405816779999999999714760899972366675557753116899999999999999870589878
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 6999970744898998787798429918999971
Q gi|254780547|r 122 RMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 122 ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
+|.+.|||+.+|+.++.+ ++++||||||.|..
T Consensus 138 ri~~~g~G~~~p~~~n~~--~~~~NRRVei~i~~ 169 (183)
T 2zvy_A 138 VLRVVGMAATMRLSDRGP--DDAINRRISLLVLN 169 (183)
T ss_dssp EEEEEECTTTTCSSCSST--TGGGGSEEEEEEEC
T ss_pred EEEEEEECCCCCCCCCCC--CHHHHCCEEEEEEC
T ss_conf 899999677877898996--33770998999989
No 11
>>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:206-338)
Probab=64.05 E-value=8.9 Score=18.85 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 3799999999852898606999970744
Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMKVTSYGKE 131 (160)
Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~~~g~G~~ 131 (160)
.-.++|++.|.+.|+++++|....||.+
T Consensus 106 ~~~~~v~~~l~~~g~~~~~i~~E~F~~~ 133 (133)
T 1krh_A 106 PMVEAVRSWLDTQGIQPANFLFEKFSAN 133 (133)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCC
T ss_conf 9999999999986997797899843289
No 12
>>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A (A:1-97)
Probab=60.85 E-value=12 Score=18.03 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCCC--H--HHHHCCCEEEEEEEEC
Q ss_conf 33799999999852898606-99997074489899878--7--7984299189999713
Q gi|254780547|r 103 LRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGHD--E--DAYAKNRRAIVFLKGC 156 (160)
Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~~--~--~~~~~NRRVei~i~~~ 156 (160)
..|.+.|++.|.+.|++.=- ..+.|+|...-...... + .....-+|+||+++.-
T Consensus 10 p~k~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~~~~~~~~~~~~~~~~~pkv~ieivv~d~ 68 (97)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDE 68 (97)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEECCCEEEEEECCEEEEEEEECHH
T ss_conf 99999999999968997399995261267777530222624664010379999998868
No 13
>>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:1-145,A:326-370)
Probab=58.89 E-value=9.7 Score=18.65 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 320011133799999999852898606999970
Q gi|254780547|r 96 NSSIALGLRRAYAVFNYFVARGISASRMKVTSY 128 (160)
Q Consensus 96 ~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 128 (160)
+.|..|+..=|++|.++|.+.|++++.|..+|+
T Consensus 65 ~l~~~lg~~~a~av~~ll~~~~l~~~~id~IGs 97 (190)
T 3cqy_A 65 RLDRSVGKLFALAVNNLLAKTKIAKDEIIAIGS 97 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 999999999999999886420344344358704
No 14
>>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} (A:1-97)
Probab=54.65 E-value=16 Score=17.41 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCCCHH----HHHCCCEEEEEEEEC
Q ss_conf 133799999999852898606-9999707448989987877----984299189999713
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGHDED----AYAKNRRAIVFLKGC 156 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~~~~----~~~~NRRVei~i~~~ 156 (160)
-..|.+.|++.|.+.|++.=- ..+.|+|...-........ ....-+|+||+++..
T Consensus 9 rp~~~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~g~~~~~~~~~~~~~~~pkv~ieivv~d~ 68 (97)
T 1hwu_A 9 KPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDK 68 (97)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGG
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCEEEECCCCEEEEEEEECHH
T ss_conf 989999999999977997499997042676677421442631250315337999998679
No 15
>>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:254-396)
Probab=54.56 E-value=12 Score=18.01 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 133799999999852898606999970744898
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISASRMKVTSYGKEMPS 134 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~ 134 (160)
+..=.++|++.|.+.|+++++|....|+...++
T Consensus 111 P~~m~~~v~~~l~~~G~~~~~i~~E~F~~~~~~ 143 (143)
T 1gvh_A 111 PVGFMQFTAKQLVDLGVKQENIHYECFGPHKVL 143 (143)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGEEEECSSSCCCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCC
T ss_conf 899999999999976998887899807898789
No 16
>>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E* (A:1-99)
Probab=53.53 E-value=15 Score=17.54 Aligned_cols=54 Identities=11% Similarity=-0.066 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCC----CHHHHHCCCEEEEEEEEC
Q ss_conf 33799999999852898606-9999707448989987----877984299189999713
Q gi|254780547|r 103 LRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGH----DEDAYAKNRRAIVFLKGC 156 (160)
Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~----~~~~~~~NRRVei~i~~~ 156 (160)
..|...|++.|.+.|++.=- ..+.|+|...-..... .....-.-+++||+++.-
T Consensus 12 p~k~~~v~~aL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~kv~ieivv~d~ 70 (99)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEE 70 (99)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCEEEECCCCEEEEEEEECHH
T ss_conf 88999999999968997199997573488898231333520250207569999998858
No 17
>>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus HB8} (A:)
Probab=53.49 E-value=14 Score=17.77 Aligned_cols=51 Identities=10% Similarity=-0.067 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 1133799999999852898606-999970744898998787798429918999971
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
....+.+.|.+.|.+.|++.=- +.+.|+|...-. ++...-.+.++|+++..
T Consensus 32 i~~~~l~~V~~aL~~~Gv~G~Tv~~v~G~G~~~~~----~~~~~~~kv~ieivv~d 83 (119)
T 2cz4_A 32 AESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIR----SVDWEGQNIRLETIVSE 83 (119)
T ss_dssp EEGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTT----CSCSTTCEEEEEEEECH
T ss_pred ECHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC----CCCCCCCCEEEEEEECH
T ss_conf 87888999999999879953799974897446872----45684550799999688
No 18
>>3dfe_A Putative PII-like signaling protein; YP_323533.1, structural genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} (A:)
Probab=52.47 E-value=16 Score=17.33 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCCCCCHH-HHHCCCEEEEEE
Q ss_conf 113379999999985289860-69999707448989987877-984299189999
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGISAS-RMKVTSYGKEMPSVYGHDED-AYAKNRRAIVFL 153 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~~~~~~~~-~~~~NRRVei~i 153 (160)
....|.+.|.+.|.+.|++.= -..+.|+|..+......... ....|.|+|+++
T Consensus 13 Ir~~~~~~v~~aL~~~Gv~G~Tv~~v~G~G~~~g~~~~~~~~~~~~~~v~ie~vV 67 (111)
T 3dfe_A 13 TEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLT 67 (111)
T ss_dssp EEGGGHHHHHHHHHHHTCSCCEEEEEBC------------------CEEEEEEEE
T ss_pred ECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 8899999999999857998879995472388886266613201246836999998
No 19
>>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* (A:1-15,A:50-172)
Probab=50.45 E-value=18 Score=17.07 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHH
Q ss_conf 9999999985289860699997074489899878779
Q gi|254780547|r 106 AYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDA 142 (160)
Q Consensus 106 A~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~~~~~ 142 (160)
.+++++.|.+.|+++++|..+-+|...|.....+...
T Consensus 23 ~~A~~~aL~~agidp~~ID~vv~gs~~~~~~~~~~a~ 59 (138)
T 3il6_A 23 HQVAKQLLEKSGKQASEIDFILVATVTPDFNMPSVAC 59 (138)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEEEECSSCSCSSSCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 9999999875311254443368840258762046889
No 20
>>1qy7_A Nitrogen regulatory protein P-II; alpha/beta, transcription; 2.00A {Synechococcus elongatus pcc 7942} (A:1-96)
Probab=45.59 E-value=15 Score=17.50 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCC--CHH--HHHCCCEEEEEEEE
Q ss_conf 133799999999852898606-9999707448989987--877--98429918999971
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGH--DED--AYAKNRRAIVFLKG 155 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~--~~~--~~~~NRRVei~i~~ 155 (160)
-..|.+.|++.|.+.|++.=- ..+.|+|...-..... .+. ..-.-+|+|+++..
T Consensus 9 rp~k~~~v~~aL~~~Gv~g~Tv~~V~G~G~~~g~~~~~~~~~~~~~~~pk~~ieivv~d 67 (96)
T 1qy7_A 9 RPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVEFLQKLKLEIVVED 67 (96)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEEEEEECCCSSCTTSSEEEEEEEEEEEEEEECG
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEECCCEEEECCCCEEEEEEEECH
T ss_conf 98899999999997799828996553351678852204351245132653899999878
No 21
>>1tgl_A Triacyl-glycerol acylhydrolase; hydrolase(carboxylic esterase); 1.90A {Rhizomucor miehei} (A:)
Probab=44.77 E-value=23 Score=16.49 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=37.5
Q ss_pred HHHHHHHCC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 999843025-6058999972266533332001113379999999985--28986069999707448989987
Q gi|254780547|r 70 SNLGSWLEK-HDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVA--RGISASRMKVTSYGKEMPSVYGH 138 (160)
Q Consensus 70 ~~ia~~l~~-~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~--~Gi~~~ri~~~g~G~~~P~~~~~ 138 (160)
..+...+++ ++.+|.|.||. |+-.=|.-..-+|.. .+++..+|.+..||. |..-+.
T Consensus 124 ~~i~~~~~~~~~~~i~itGHS-----------LGGAlA~l~a~~l~~~~~~~~~~~i~~~tfG~--PrvGn~ 182 (269)
T 1tgl_A 124 ATVLDQFKQYPSYKVAVTGHS-----------LGGATALLCALDLYQREEGLSSSNLFLYTQGQ--PRVGNP 182 (269)
T ss_pred HHHHHHHHHCCCCCEEEECCC-----------HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCC--CCCCCH
T ss_conf 999999875676314774231-----------77899999999998634466543343254279--875798
No 22
>>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} (A:152-290)
Probab=43.08 E-value=19 Score=16.95 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 37999999998528986069999707
Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMKVTSYG 129 (160)
Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~~~g~G 129 (160)
.-.++|++.|.+.|++.++|....||
T Consensus 114 ~~~~~~~~~l~~~G~~~~~i~~E~Fg 139 (139)
T 2r6h_A 114 PXANAVKGXLENLGVPRNXLFFDDFG 139 (139)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEECCC
T ss_pred HHHHHHHHHHHHCCCCHHHEEEECCC
T ss_conf 99999999999859988997983389
No 23
>>3ce8_A Putative PII-like nitrogen regulatory protein; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.40A {Shewanella baltica OS155} (A:)
Probab=42.62 E-value=25 Score=16.29 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHC-CCCCEE-EEEEEECCCCCCCCCCCHHH-HHCCCEEEEEEEEC
Q ss_conf 1133799999999852-898606-99997074489899878779-84299189999713
Q gi|254780547|r 101 LGLRRAYAVFNYFVAR-GISASR-MKVTSYGKEMPSVYGHDEDA-YAKNRRAIVFLKGC 156 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~-Gi~~~r-i~~~g~G~~~P~~~~~~~~~-~~~NRRVei~i~~~ 156 (160)
+-..|.+.|++.|.+. |++.=- ..+.|+|............. ...-+++|+++..-
T Consensus 30 Irp~k~~~V~~AL~~~~Gv~g~Tv~~V~G~G~q~g~~~~~e~~~~~~pkvkieivv~d~ 88 (120)
T 3ce8_A 30 AQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIXHPAA 88 (120)
T ss_dssp EEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGG
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEEECCHH
T ss_conf 77889999999998568979759984103575665746777642500058999982999
No 24
>>2gpj_A Siderophore-interacting protein; ZP_00813641.1, structural genomics, PSI, protein structure initiative; HET: FAD; 2.20A {Shewanella putrefaciens cn-32} (A:108-229)
Probab=42.00 E-value=25 Score=16.24 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH-CCCCCEEEEEEEE
Q ss_conf 379999999985-2898606999970
Q gi|254780547|r 104 RRAYAVFNYFVA-RGISASRMKVTSY 128 (160)
Q Consensus 104 ~RA~aV~~~L~~-~Gi~~~ri~~~g~ 128 (160)
.=.+.++.+|.+ .|++.++|.+.||
T Consensus 94 ~~vk~lR~~l~~~~g~~r~~i~~~gY 119 (122)
T 2gpj_A 94 NSXRALRRHFKQAHALPKSHFYTSSY 119 (122)
T ss_dssp HHHHHHHHHHHHHCCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf 99999999999853999899699831
No 25
>>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transductory protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} (A:1-99)
Probab=40.49 E-value=27 Score=16.10 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCC--CHHH--HHCCCEEEEEEEEC
Q ss_conf 133799999999852898606-9999707448989987--8779--84299189999713
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGH--DEDA--YAKNRRAIVFLKGC 156 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~--~~~~--~~~NRRVei~i~~~ 156 (160)
-..|.+.|++.|...|++.=- ..+.|+|...-..... .+.. --.-+++||+++.-
T Consensus 11 rp~k~~~v~~aL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~kv~ieivv~d~ 70 (99)
T 3bzq_A 11 KPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDS 70 (99)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETT
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCEEECCCCEEEEEEEECHH
T ss_conf 989999999999868997199995261457766431441540132102058999998789
No 26
>>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli} (A:1-68)
Probab=40.12 E-value=23 Score=16.51 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 1113379999999985289860699
Q gi|254780547|r 100 ALGLRRAYAVFNYFVARGISASRMK 124 (160)
Q Consensus 100 ~LS~~RA~aV~~~L~~~Gi~~~ri~ 124 (160)
.||++-|+.|...|..+||++.+-.
T Consensus 8 gL~e~eANevla~L~~~gI~A~K~~ 32 (68)
T 1yj7_A 8 GLTEKEANQMQALLLSNDVNVSKEM 32 (68)
T ss_dssp EECHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899999999999998799849740
No 27
>>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase, transferase; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3gwe_A (A:1-41,A:77-203)
Probab=39.02 E-value=19 Score=16.95 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=41.8
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHH-------CCCEEEEEEEE
Q ss_conf 99997226653333200111337999999998528986069999707448989987877984-------29918999971
Q gi|254780547|r 83 FLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYA-------KNRRAIVFLKG 155 (160)
Q Consensus 83 i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~~~~~~~-------~NRRVei~i~~ 155 (160)
-.|.||--+. ..++==++++++.|.+.|++++.|..+-+|.+.|.........+. .+-.+..+-.+
T Consensus 34 ~~~~~~~~de-------s~~~LA~~A~~~aL~~agi~p~dID~iv~gs~t~~~~~~~~a~~ia~~lGl~~~~~~~~i~~a 106 (168)
T 3gwa_A 34 ADIAGHLPRE-------TAADLAYEAARKLFAQGAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTHAGALDVNLG 106 (168)
T ss_dssp EEEEEECCTC-------CHHHHHHHHHHHHHHTTSCCGGGCCEEEEEESSCSCSBSCHHHHHHHHTTCCTTSEEEEEECS
T ss_pred EEEEEECCCC-------CHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 9999988999-------999999999999999759791206758984102566663366777765303565077661213
Q ss_pred CC
Q ss_conf 36
Q gi|254780547|r 156 CR 157 (160)
Q Consensus 156 ~~ 157 (160)
|.
T Consensus 107 Ca 108 (168)
T 3gwa_A 107 CS 108 (168)
T ss_dssp TT
T ss_pred HH
T ss_conf 34
No 28
>>3iib_A Peptidase M28; YP_926796.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} (A:1-69,A:232-444)
Probab=38.01 E-value=29 Score=15.87 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=44.2
Q ss_pred EEEEEEEEECCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEEECCCCCCCCCCCH---HHHHCCCEEEEEE
Q ss_conf 0589999722665--33332001113379999999985289860-6999970744898998787---7984299189999
Q gi|254780547|r 80 DCDFLIEGHADEL--GSRNSSIALGLRRAYAVFNYFVARGISAS-RMKVTSYGKEMPSVYGHDE---DAYAKNRRAIVFL 153 (160)
Q Consensus 80 ~~~i~I~GhtD~~--Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~g~G~~~P~~~~~~~---~~~~~NRRVei~i 153 (160)
+..|+|-||-|+. |+-+..-.-+--=.-.+..+|.+.|..+. .|.++.++.++.=..++.. .-.....++.+.+
T Consensus 87 ~e~Vii~aHlDS~~~g~GA~Dd~sGva~~leaar~L~~~~~~p~rtI~fv~~~~EE~Gl~Gs~~y~~~~~~~~~~~~~~~ 166 (282)
T 3iib_A 87 DEIVLIGAHLDSWDEGTGAIDDGAGVAIVTAAAKHILDLPQKPERTIRVVLYAAEELGLLGGKTYAKEHEAELEKHYIAA 166 (282)
T ss_dssp EEEEEEEEECCCCSSSCCTTTTHHHHHHHHHHHHHHHTSSSCCSEEEEEEEESCGGGTSHHHHHHHHHTGGGGGGEEEEE
T ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHEEEE
T ss_conf 85899950124554558966761458999999999976325766652699963664443234888876214220003565
Q ss_pred E
Q ss_conf 7
Q gi|254780547|r 154 K 154 (160)
Q Consensus 154 ~ 154 (160)
+
T Consensus 167 ~ 167 (282)
T 3iib_A 167 E 167 (282)
T ss_dssp E
T ss_pred E
T ss_conf 1
No 29
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223)
Probab=37.50 E-value=30 Score=15.82 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC-C------------CCCHHHHHHHHHHHHHHHHCC
Q ss_conf 002204752243247999999984302560589999722665333-3------------200111337999999998528
Q gi|254780547|r 51 SVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSR-N------------SSIALGLRRAYAVFNYFVARG 117 (160)
Q Consensus 51 ~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~Gs~-~------------yN~~LS~~RA~aV~~~L~~~G 117 (160)
.|.|=.+...-......-+..+...+++++....+.+..+..... . .=...+...|..+..++.+.|
T Consensus 19 ~i~~i~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~l~~~~~~g 98 (117)
T 3jy6_A 19 HVVVLTSELELSRTRQERYRGILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISG 98 (117)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEEECSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSS
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 00277047100047888758999998646975323455317899999998764211000011222013443345666652
Q ss_pred CC-CEEEEEEEECCCC
Q ss_conf 98-6069999707448
Q gi|254780547|r 118 IS-ASRMKVTSYGKEM 132 (160)
Q Consensus 118 i~-~~ri~~~g~G~~~ 132 (160)
+. |+.|.++||+...
T Consensus 99 ~~iP~di~ivgfdd~~ 114 (117)
T 3jy6_A 99 LIDNQTVTATGFADTD 114 (117)
T ss_dssp SCCSSSEEEEEBCCCS
T ss_pred CCCCCCCCCCCCCCHH
T ss_conf 2577631124668869
No 30
>>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:)
Probab=34.46 E-value=17 Score=17.27 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.5
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2266533332001113379999999985
Q gi|254780547|r 88 HADELGSRNSSIALGLRRAYAVFNYFVA 115 (160)
Q Consensus 88 htD~~Gs~~yN~~LS~~RA~aV~~~L~~ 115 (160)
|+|-+-+.+|+.-|-.++|+.-.+||++
T Consensus 1 HaeGTfTsD~s~yLe~~aakdFv~WL~n 28 (31)
T 3iol_B 1 HAEGTFTSDVSSYLEGQAAKEFIAWLVK 28 (31)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9986411768999999999999999980
No 31
>>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C* (A:1-110)
Probab=34.31 E-value=34 Score=15.52 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCEE-EEEEEECCCCCCCCCCCHHH-----HHCCCEEEEEEEEC
Q ss_conf 1133799999999852898606-99997074489899878779-----84299189999713
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGISASR-MKVTSYGKEMPSVYGHDEDA-----YAKNRRAIVFLKGC 156 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~~~r-i~~~g~G~~~P~~~~~~~~~-----~~~NRRVei~i~~~ 156 (160)
+-..|.+.|++.|.+.|++.=- ..+.|+|...-...-..... .-.-+++|+++..-
T Consensus 20 Irp~k~~~v~~AL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~pkv~ieivv~de 81 (110)
T 2o66_A 20 VRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKD 81 (110)
T ss_dssp ECGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGG
T ss_pred ECHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEEEECCCEEEECCCCCEEEEEEEECHH
T ss_conf 89899999999998689971999940331455573044156134420125358999993678
No 32
>>1xpj_A Hypothetical protein; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics, unknown function; HET: TLA; 2.30A {Vibrio cholerae} (A:)
Probab=34.16 E-value=34 Score=15.50 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=51.5
Q ss_pred EEEECCCC------------CCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02204752------------243247999999984302560589999722665333320011133799999999852898
Q gi|254780547|r 52 VFFDTSSY------------SIRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGIS 119 (160)
Q Consensus 52 v~F~~~s~------------~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~ 119 (160)
++|+.|.. .+.|+..+.|+.+. +.+++|.|.-.-...+...+...+...--..+.++|.+.|++
T Consensus 4 i~fD~DGTL~~~~~~~~~~~~~~p~v~e~l~~l~----~~G~~ivi~Tnq~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 79 (126)
T 1xpj_A 4 LIVDLDGTLTQANTSDYRNVLPRLDVIEQLREYH----QLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVP 79 (126)
T ss_dssp EEECSTTTTBCCCCSCGGGCCBCHHHHHHHHHHH----HTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCC
T ss_pred EEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9994788608899998262785799999999999----789999999566532457866565787999999999982998
Q ss_pred CEEEEEEE
Q ss_conf 60699997
Q gi|254780547|r 120 ASRMKVTS 127 (160)
Q Consensus 120 ~~ri~~~g 127 (160)
-+.+...-
T Consensus 80 ~~~~~~~k 87 (126)
T 1xpj_A 80 YDEILVGK 87 (126)
T ss_dssp CSEEEECC
T ss_pred EEEEEECC
T ss_conf 26998689
No 33
>>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:114-250)
Probab=33.31 E-value=32 Score=15.66 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 379999999985289860699997074
Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMKVTSYGK 130 (160)
Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~~~g~G~ 130 (160)
.-.+.|.+.|.+.|+++++|....||.
T Consensus 107 ~~~~~v~~~l~~~g~~~~~i~~E~f~~ 133 (137)
T 1tvc_A 107 GMIDAACELVRSRGIPGEQVFFEKFLP 133 (137)
T ss_dssp HHHHHHHHHHHHHCCCCSEEEECCCSS
T ss_pred HHHHHHHHHHHHCCCCHHHEEEEECCC
T ss_conf 999999999998499889989953778
No 34
>>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase, structural genomics, marseilles structural genomics program @ AFMB, MSGP; 2.35A {Kunjin virus} PDB: 2hcs_A 2hfz_A (A:41-83,A:279-393)
Probab=30.44 E-value=35 Score=15.45 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHH-------CCCEEE-EEEEEECCCCCCCC---C------C--------------------CHH
Q ss_conf 224324799999998430-------256058-99997226653333---2------0--------------------011
Q gi|254780547|r 59 YSIRPADIQVLSNLGSWL-------EKHDCD-FLIEGHADELGSRN---S------S--------------------IAL 101 (160)
Q Consensus 59 ~~L~~~~~~~L~~ia~~l-------~~~~~~-i~I~GhtD~~Gs~~---y------N--------------------~~L 101 (160)
.+-.+..+..++..+.|| ++|... +-|.+..|.+||-. | | ..|
T Consensus 16 peP~~gt~~iM~~~~~Wl~~~l~r~kkPg~tvMDvIsR~DQRGSGQVVTYaLNT~TN~kvQLiRm~E~Egvl~~~d~~~l 95 (158)
T 2hcn_A 16 PEPPEGVKYVLNETTNWLWAFLAREKRPGRTVMDVISREDQRGSGQVVTYALNTFTNLAVQLVRMMEGEGVIGPDDVEKL 95 (158)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTTCCC---------------CCHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTSSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC
T ss_conf 99981278999999999999984679989668988762587788876350346588899999999860688872454431
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEEEEEECCCCCCCCCCCHH
Q ss_conf 1337999999998528986-069999707448989987877
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISA-SRMKVTSYGKEMPSVYGHDED 141 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~-~ri~~~g~G~~~P~~~~~~~~ 141 (160)
+..+...|..||...|... .|+.+. |.+.-+.+.++.-
T Consensus 96 ~~~~~~~i~~WL~~~g~erL~rMaVS--GDDcVVkp~ddrF 134 (158)
T 2hcn_A 96 TKGKGPKVRTWLSENGEERLSRMAVS--GDDCVVKPLDDRF 134 (158)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTEEEE--TTEEEECCSSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCEEE--CCCEEECCCCCHH
T ss_conf 51567899999998678888465686--8866743665104
No 35
>>2gw8_A PII signal transduction protein; transcriptional regulation, structural genomics, oxford protein production facility, OPPF; 1.85A {Neisseria meningitidis MC58} (A:)
Probab=29.68 E-value=40 Score=15.06 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHCCCCCEEE-EEEEECCCCCCCCCCCHHHH----HCCCEEEEEEEEC
Q ss_conf 1337999999998528986069-99970744898998787798----4299189999713
Q gi|254780547|r 102 GLRRAYAVFNYFVARGISASRM-KVTSYGKEMPSVYGHDEDAY----AKNRRAIVFLKGC 156 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~~~ri-~~~g~G~~~P~~~~~~~~~~----~~NRRVei~i~~~ 156 (160)
-..|++.|++.|.+.|++.--+ .+.|+|...-.......... -.-.++|++++..
T Consensus 11 rp~k~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~i~ivv~d~ 70 (114)
T 2gw8_A 11 KPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADD 70 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGG
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCEEECCCCCEEEEEEEECHH
T ss_conf 999999999999978997199996342136668620212640120202147999998728
No 36
>>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396)
Probab=29.03 E-value=41 Score=14.99 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=50.5
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEEEEECCCC-------------------CCCCCCC-----HHHHHHH
Q ss_conf 0220475224324799999998430256-0589999722665-------------------3333200-----1113379
Q gi|254780547|r 52 VFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADEL-------------------GSRNSSI-----ALGLRRA 106 (160)
Q Consensus 52 v~F~~~s~~L~~~~~~~L~~ia~~l~~~-~~~i~I~GhtD~~-------------------Gs~~yN~-----~LS~~RA 106 (160)
+.+..++..+.......+..+...+... +--|.|.|.+.+. |-..|+. +=.-|++
T Consensus 83 ~~l~~~~~s~~~~~~~~~~~l~~~l~~~~PD~VlV~GD~~~~La~AlaA~~~~IPvaHieaGlrs~d~~~g~peE~~R~~ 162 (211)
T 3dzc_A 83 LNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLRTGNIYSPWPEEGNRKL 162 (211)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCCCSCTTSSTTHHHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHC
T ss_conf 10388998899999999999999898626764540014654213777765035532685046555686535614554220
Q ss_pred ------------HHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf ------------9999999852898606999970744
Q gi|254780547|r 107 ------------YAVFNYFVARGISASRMKVTSYGKE 131 (160)
Q Consensus 107 ------------~aV~~~L~~~Gi~~~ri~~~g~G~~ 131 (160)
+.-++.|++.|++++||.++|-|.-
T Consensus 163 is~lA~lhF~~t~~~~~nL~~eG~~~~rI~~vGN~~~ 199 (211)
T 3dzc_A 163 TAALTQYHFAPTDTSRANLLQENYNAENIFVTGNGDG 199 (211)
T ss_dssp HHHTCSEEEESSHHHHHHHHHTTCCGGGEEECCCCCS
T ss_pred CCCCCEEEEECCHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 3652127862353789998762147643203214798
No 37
>>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A (A:)
Probab=28.55 E-value=42 Score=14.94 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 379999999985289860699
Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMK 124 (160)
Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~ 124 (160)
+.|..+.++|...|+++++|-
T Consensus 29 ~qA~~l~~~l~~~~~~~~~i~ 49 (161)
T 1ujc_A 29 DESRLMANWLKGQKVEIERVL 49 (161)
T ss_dssp HHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHCCCCCCCCEEE
T ss_conf 999974443002486612477
No 38
>>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:261-403)
Probab=27.36 E-value=41 Score=15.01 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 799999999852898606999970744
Q gi|254780547|r 105 RAYAVFNYFVARGISASRMKVTSYGKE 131 (160)
Q Consensus 105 RA~aV~~~L~~~Gi~~~ri~~~g~G~~ 131 (160)
=.+.|++.|.+.|++.++|....||..
T Consensus 113 m~~~v~~~l~~~g~~~~~i~~E~F~~~ 139 (143)
T 1cqx_A 113 FMRMQHDALKNLGIHEARIHYEVFGPD 139 (143)
T ss_dssp HHHHHHHHHHHTTCCGGGEEECCCSSC
T ss_pred HHHHHHHHHHHCCCCHHHEEEECCCCC
T ss_conf 999999999976998899799522798
No 39
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=27.14 E-value=45 Score=14.80 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHCCCC-CEEEEEEEECC-CCCCC
Q ss_conf 1133799999999852898-60699997074-48989
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGIS-ASRMKVTSYGK-EMPSV 135 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~-~~ri~~~g~G~-~~P~~ 135 (160)
-+..-|..+.++|.++|+. |+.|.++|||. ..|++
T Consensus 85 ~~d~~a~~~~~~l~~~g~~vP~di~ii~f~~d~~~~~ 121 (134)
T 3g85_A 85 NSDSIALGVISVLNKRQISIPDDIEIVAIGXNDREYT 121 (134)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECSCHHHH
T ss_pred ECCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCHHHH
T ss_conf 0222330156776401135884466763267977999
No 40
>>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} (A:58-170)
Probab=27.07 E-value=45 Score=14.79 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 3379999999985289860699997
Q gi|254780547|r 103 LRRAYAVFNYFVARGISASRMKVTS 127 (160)
Q Consensus 103 ~~RA~aV~~~L~~~Gi~~~ri~~~g 127 (160)
.+|+..++.+|.+.|++.+++-+.+
T Consensus 5 ~~~~~~ia~~L~~~g~~gd~V~i~~ 29 (113)
T 3ite_A 5 NETANQVANLIIHASLHGRAIAVSL 29 (113)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 9999999999997799969899993
No 41
>>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} (A:1-103)
Probab=26.34 E-value=46 Score=14.71 Aligned_cols=67 Identities=21% Similarity=0.081 Sum_probs=38.9
Q ss_pred CCHHHHHHHHH-HHHHHCCCEEEEEEEEECCCC----CCCC------------CCCHHHHHHHHHHHHHHHH-CCCCCEE
Q ss_conf 43247999999-984302560589999722665----3333------------2001113379999999985-2898606
Q gi|254780547|r 61 IRPADIQVLSN-LGSWLEKHDCDFLIEGHADEL----GSRN------------SSIALGLRRAYAVFNYFVA-RGISASR 122 (160)
Q Consensus 61 L~~~~~~~L~~-ia~~l~~~~~~i~I~GhtD~~----Gs~~------------yN~~LS~~RA~aV~~~L~~-~Gi~~~r 122 (160)
...+....+.. ++..+.++...|.|.-..|.. |+.+ .+...-.+-+.++-++|.+ .||+++|
T Consensus 15 ~~~~~~~~~s~~ia~~lgKpe~~imv~v~~~~~m~fgGs~~P~a~~~i~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~R 94 (103)
T 3b64_A 15 KRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADR 94 (103)
T ss_dssp HHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 18999999999999887999788999995683179648899889999999658997888999999999999873999660
Q ss_pred EEEEE
Q ss_conf 99997
Q gi|254780547|r 123 MKVTS 127 (160)
Q Consensus 123 i~~~g 127 (160)
|-+.-
T Consensus 95 iyI~F 99 (103)
T 3b64_A 95 IFVLY 99 (103)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 89999
No 42
>>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:1-192,A:357-375)
Probab=25.90 E-value=39 Score=15.13 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 99999999852898606999970
Q gi|254780547|r 106 AYAVFNYFVARGISASRMKVTSY 128 (160)
Q Consensus 106 A~aV~~~L~~~Gi~~~ri~~~g~ 128 (160)
.+..+++|.+.|+++++|.++|-
T Consensus 158 ~~~~~~~l~~~G~~~~rI~v~Gn 180 (211)
T 3beo_A 158 TAKSATNLQKENKDESRIFITGN 180 (211)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCC
T ss_pred CHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 22667777760886211332016
No 43
>>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} (A:370-425)
Probab=25.46 E-value=41 Score=15.00 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=11.1
Q ss_pred HHHHHHHHHHCCCCCE
Q ss_conf 9999999985289860
Q gi|254780547|r 106 AYAVFNYFVARGISAS 121 (160)
Q Consensus 106 A~aV~~~L~~~Gi~~~ 121 (160)
|-.+++||+.+|||-.
T Consensus 3 ATdlAdyLV~kGvPFR 18 (56)
T 1k7w_A 3 ATDLALYLVRKGVPFR 18 (56)
T ss_dssp HHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHCCCCHH
T ss_conf 5899999998699899
No 44
>>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A {Thermoproteus} (X:34-105)
Probab=25.38 E-value=43 Score=14.91 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7522432479999999843025605899997226653333200111337999999998528986069
Q gi|254780547|r 57 SSYSIRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRM 123 (160)
Q Consensus 57 ~s~~L~~~~~~~L~~ia~~l~~~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri 123 (160)
+--.|....+..++.++..|+.+...|.-.=|--..|-.. | .-|-+-.-.||++.|+++.|-
T Consensus 8 G~ITi~QK~r~FidkIv~llK~~gi~I~S~FYDk~AGVWK----i-KvkD~~fYrYLvnNGv~~GrK 69 (72)
T 2dch_X 8 GYITILQKDRRFIDKIVALLKSAEIKISSLFYDKGAGVWK----I-KVKDERLYRYLVNNGVIPGKK 69 (72)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCCEEEEEEETTTTEEE----E-EEECHHHHHHHHTTTCCSCC-
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE----E-EECCHHHHHHHHHCCCCCCCC
T ss_conf 5399955889999999999998278762025516775799----9-977769999999839966888
No 45
>>1tia_A Lipase; hydrolase(carboxylic esterase); 2.10A {Penicillium camemberti} (A:)
Probab=24.78 E-value=50 Score=14.54 Aligned_cols=54 Identities=20% Similarity=0.347 Sum_probs=34.0
Q ss_pred HHHHHHHCC-CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 999843025-605899997226653333200111337999999998528986069999707448989987
Q gi|254780547|r 70 SNLGSWLEK-HDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSYGKEMPSVYGH 138 (160)
Q Consensus 70 ~~ia~~l~~-~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~ 138 (160)
..+...+++ ++.+|.|.||. |+-.=|.-..-+|...|.+ .+.+..||. |..-+.
T Consensus 125 ~~i~~~~~~~~~~~i~vTGHS-----------LGGAiA~L~a~~l~~~~~~--~~~~~tfG~--PrvGn~ 179 (279)
T 1tia_A 125 KELKEVVAQNPNYELVVVGHS-----------LGAAVATLAATDLRGKGYP--SAKLYAYAS--PRVGNA 179 (279)
T ss_pred HHHHHHHHHCCCCEEEEECCC-----------HHHHHHHHHHHHHHHCCCC--CCEEEEECC--CCCCCH
T ss_conf 999999976899359985251-----------7899999999999863898--521798468--542789
No 46
>>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} (A:14-177)
Probab=24.48 E-value=50 Score=14.50 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=34.2
Q ss_pred CEEEEECCCCC---CCHHHHHHHHHHHHHHCC-----CEEEEEEEEECCCC-----------CCCCCC---CHHHHHHHH
Q ss_conf 10022047522---432479999999843025-----60589999722665-----------333320---011133799
Q gi|254780547|r 50 DSVFFDTSSYS---IRPADIQVLSNLGSWLEK-----HDCDFLIEGHADEL-----------GSRNSS---IALGLRRAY 107 (160)
Q Consensus 50 ~~v~F~~~s~~---L~~~~~~~L~~ia~~l~~-----~~~~i~I~GhtD~~-----------Gs~~yN---~~LS~~RA~ 107 (160)
+.++|.+.--+ ..+...-.+....+.|++ .+....+.|..-.. |-+.++ --.|--.|-
T Consensus 25 d~~~~~~~~~~~~~~~~~~~L~~~a~~~aL~~agi~~~~i~~~~~g~~~~~~~~~~~~~~~lg~p~~~v~~aCssg~~al 104 (164)
T 3lma_A 25 DKSYDEXHCNQKNWEXAERKLXEDAVQSALSKQNLKKEDIDIFLAGDLLNQNVTANYVARHLKIPFLCLFGACSTSXESI 104 (164)
T ss_dssp SEECSSTTTTSSSHHHHHHHHHHHHHHHHHHTTTCCGGGCSEEEEEESSSSSTTHHHHHHHHCCCEEEBCCSTTHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 63034511375538899999999999999998198989988999997049678999999973998863057326799999
Q ss_pred HHHHHHHHCCCCCEEEE
Q ss_conf 99999985289860699
Q gi|254780547|r 108 AVFNYFVARGISASRMK 124 (160)
Q Consensus 108 aV~~~L~~~Gi~~~ri~ 124 (160)
.+...++..|-..--|.
T Consensus 105 ~~A~~~i~~g~~~~~lv 121 (164)
T 3lma_A 105 AISSALIDGGFAKRALA 121 (164)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99999997799998999
No 47
>>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} (A:)
Probab=23.69 E-value=38 Score=15.18 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=24.7
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2266533332001113379999999985
Q gi|254780547|r 88 HADELGSRNSSIALGLRRAYAVFNYFVA 115 (160)
Q Consensus 88 htD~~Gs~~yN~~LS~~RA~aV~~~L~~ 115 (160)
|+|-+-+.+|+.-|-.++|+.-.+||++
T Consensus 1 HaeGTfTsD~s~yLe~~aakdFv~WL~~ 28 (39)
T 1jrj_A 1 HGEGTFTSDLSKQMEEEAVRLFIEWLKN 28 (39)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9887500679999999999999999982
No 48
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=22.28 E-value=41 Score=15.02 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf 11337999999998528986069999707448
Q gi|254780547|r 101 LGLRRAYAVFNYFVARGISASRMKVTSYGKEM 132 (160)
Q Consensus 101 LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~ 132 (160)
.+..-|..+..+|.+.|+.|+.|.++||..+.
T Consensus 86 ~~D~~A~g~~~al~~~g~~P~di~iig~d~~~ 117 (137)
T 2fqx_A 86 VAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQ 117 (137)
T ss_dssp ECGGGHHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 47886616999999875146985899984430
No 49
>>3e53_A Fatty-acid-COA ligase FADD28; fatty acyl AMP ligase; 2.35A {Mycobacterium tuberculosis} (A:61-204)
Probab=21.97 E-value=57 Score=14.21 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3799999999852898606999
Q gi|254780547|r 104 RRAYAVFNYFVARGISASRMKV 125 (160)
Q Consensus 104 ~RA~aV~~~L~~~Gi~~~ri~~ 125 (160)
+|+..+..+|.+.|++.+++-+
T Consensus 6 ~~~~~~a~~L~~~g~~gd~V~i 27 (144)
T 3e53_A 6 RRTLNVAQELSRCGSTGDRVVI 27 (144)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999999977999898999
No 50
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=20.84 E-value=60 Score=14.07 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=49.6
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE---EEE-EEECCCCCCCCC-------------CCHHHHHHHHHHHHH
Q ss_conf 100220475224324799999998430256058---999-972266533332-------------001113379999999
Q gi|254780547|r 50 DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCD---FLI-EGHADELGSRNS-------------SIALGLRRAYAVFNY 112 (160)
Q Consensus 50 ~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~---i~I-~GhtD~~Gs~~y-------------N~~LS~~RA~aV~~~ 112 (160)
..|.|=.+...-.......+..+.+.|+++... ..+ .+..+..+..+. =...+..-|..|..+
T Consensus 18 r~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~l~~ 97 (132)
T 3kjx_A 18 RRIGFXGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREXTQAXLERSPDLDFLYYSNDXIAAGGLLY 97 (132)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 86410066665562167788888989997298632110001132212331102232025654124532672156789999
Q ss_pred HHHCCC-CCEEEEEEEECCCC
Q ss_conf 985289-86069999707448
Q gi|254780547|r 113 FVARGI-SASRMKVTSYGKEM 132 (160)
Q Consensus 113 L~~~Gi-~~~ri~~~g~G~~~ 132 (160)
|.+.|+ -|+.|.++||+...
T Consensus 98 l~~~gi~vP~di~iigfd~~~ 118 (132)
T 3kjx_A 98 LLEQGIDIPGQIGLAGFNNVE 118 (132)
T ss_dssp HHHTTCCTTTTCEEECSBCCG
T ss_pred HHHCCCCCCCCEEEEEECCCH
T ss_conf 998699878875999968829
No 51
>>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A (A:1-170)
Probab=20.70 E-value=60 Score=14.06 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 13379999999985289
Q gi|254780547|r 102 GLRRAYAVFNYFVARGI 118 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi 118 (160)
|---|-.....+++.|-
T Consensus 114 sg~~al~~a~~~i~~g~ 130 (170)
T 1zow_A 114 GFMYSMITAKQYVQSGD 130 (170)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHCCC
T ss_conf 21215676540542598
No 52
>>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} (A:)
Probab=20.50 E-value=22 Score=16.60 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=34.7
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCEEEEE
Q ss_conf 9999999852898606999970744898998787798429918999
Q gi|254780547|r 107 YAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVF 152 (160)
Q Consensus 107 ~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~~~~~~~~~~NRRVei~ 152 (160)
++.+-.|.++|+..+.+.+.--|+.+|++.+.+-. .-.++|+-|-
T Consensus 42 EvL~pil~Kygl~l~~v~v~l~g~~~pLdL~~pvs-~l~~q~l~le 86 (104)
T 1wfy_A 42 EALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVS-SVASQTLVLD 86 (104)
T ss_dssp TTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGG-GSSSSCEEEC
T ss_pred HHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCHH-HHCCCEEEEE
T ss_conf 99999999808784576999679964334798310-1147489950
No 53
>>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A (C:)
Probab=20.48 E-value=57 Score=14.20 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=22.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2266533332001113379999999985
Q gi|254780547|r 88 HADELGSRNSSIALGLRRAYAVFNYFVA 115 (160)
Q Consensus 88 htD~~Gs~~yN~~LS~~RA~aV~~~L~~ 115 (160)
|+.-+-+.+|..-|-.+||+...+||++
T Consensus 1 HSqGtFtsDYskyld~r~AqdFvqwLmn 28 (29)
T 2g49_C 1 HSQGTFTSDYSKYLDSRRAQDFVQWLMN 28 (29)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9877523238999999898999999862
No 54
>>1lgy_A Lipase, triacylglycerol lipase; hydrolase (carboxylic ester); 2.20A {Rhizopus niveus} (A:)
Probab=20.34 E-value=61 Score=14.01 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=41.3
Q ss_pred CEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCEEEEEEEECCCCCCCCCCCHH--HHHCCCEEEEEE
Q ss_conf 6058999972266533332001113379999999985289--86069999707448989987877--984299189999
Q gi|254780547|r 79 HDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGI--SASRMKVTSYGKEMPSVYGHDED--AYAKNRRAIVFL 153 (160)
Q Consensus 79 ~~~~i~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~Gi--~~~ri~~~g~G~~~P~~~~~~~~--~~~~NRRVei~i 153 (160)
++.+|.|.||. |+-.=|.-+.-+|...+. +...+...+||. |..-+..-. -...++++.-++
T Consensus 135 ~~~~i~itGHS-----------LGGalA~l~a~~~~~~~~~~~~~~v~~~tfg~--P~vg~~~~~~~~~~~~~~~~~vv 200 (269)
T 1lgy_A 135 PTYKVIVTGHS-----------LGGAQALLAGMDLYQREPRLSPKNLSIFTVGG--PRVGNPTFAYYVESTGIPFQRTV 200 (269)
T ss_dssp TTCEEEEEEET-----------HHHHHHHHHHHHHHHHCTTCSTTTEEEEEESC--CCCBCHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCC-----------CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECC--CCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 99659984357-----------30688999999999728556888549998589--97578899999983599779999
No 55
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:109-250)
Probab=20.06 E-value=62 Score=13.97 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHCCCC-CEEEEEEEECCC
Q ss_conf 133799999999852898-606999970744
Q gi|254780547|r 102 GLRRAYAVFNYFVARGIS-ASRMKVTSYGKE 131 (160)
Q Consensus 102 S~~RA~aV~~~L~~~Gi~-~~ri~~~g~G~~ 131 (160)
...-|..+.++|.++|+. |+.|.++||+..
T Consensus 91 ~d~~a~g~~~~l~~~g~~vp~di~ivg~D~~ 121 (142)
T 2vk2_A 91 NDDMVIGAIQAIKEAGLKPGKDILTGSIDGV 121 (142)
T ss_dssp SHHHHHHHHHHHHHTTCCBTTTBEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf 8499999999999860148997799998881
Done!