HHsearch results for GI: 254780547 and protein with PDBid: 3cyp_B
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=99.95 E-value=1.5e-27 Score=178.78 Aligned_cols=106 Identities=20% Similarity=0.372 Sum_probs=96.1
Q ss_pred CEEEEECCCC-CCCHHHHHHHHHHHHHHCCCE--EEEEEEEECCCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 1002204752-243247999999984302560--589999722665----333320011133799999999852898606
Q gi|254780547|r 50 DSVFFDTSSY-SIRPADIQVLSNLGSWLEKHD--CDFLIEGHADEL----GSRNSSIALGLRRAYAVFNYFVARGISASR 122 (160)
Q Consensus 50 ~~v~F~~~s~-~L~~~~~~~L~~ia~~l~~~~--~~i~I~GhtD~~----Gs~~yN~~LS~~RA~aV~~~L~~~Gi~~~r 122 (160)
+.++|+.+++ .|+++++..|+.++.+|+.++ ..|.|+||||+. |+..|||.||++||.+|++||++.||+++|
T Consensus 3 d~~~F~~~~s~~l~~~~~~~L~~ia~~l~~~p~~~~I~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r 82 (138)
T 3cyp_B 3 DPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQ 82 (138)
T ss_dssp CCEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 87661899734419989999999999999689970799988528988777761779999999999999999985999643
Q ss_pred EEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEE
Q ss_conf 999970744898998787798429918999971
Q gi|254780547|r 123 MKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKG 155 (160)
Q Consensus 123 i~~~g~G~~~P~~~~~~~~~~~~NRRVei~i~~ 155 (160)
|.+.|||+++|++++++++++++||||||+|.-
T Consensus 83 i~~~g~G~~~P~~~n~~~~~~a~NRRVEI~i~~ 115 (138)
T 3cyp_B 83 LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFST 115 (138)
T ss_dssp EEEEECTTCSCSSCTTSHHHHHHHSEEEEEEEE
T ss_pred EEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEC
T ss_conf 688210013757999397899873988999976