RPSBLAST alignment of GI: 254780547 and protein with PDBid: 1r1m

>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1 Length = 164

 Score = 95.2 bits (236), Expect = 6e-21
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 47  SVGDSVFFDTSSYSIRPADIQVLSNLGSWLEKH-DCDFLIEGHADELGSRNSSIALGLRR 105
           S+     F     S+R      L  L   L +       +EGH D +GS   + AL  RR
Sbjct: 12  SLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERR 71

Query: 106 AYAVFNYFVARGISASRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRA 158
           AY V N  V+ G+  SR+     G+    +    E   AK    +   K   A
Sbjct: 72  AYVVANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREA 124