BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus
Liberibacter asiaticus str. psy62]
         (160 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score =  330 bits (845), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MQYSTIFIILSAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVFFDTSSYS 60
           MQYSTIFIILSAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVFFDTSSYS
Sbjct: 1   MQYSTIFIILSAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVFFDTSSYS 60

Query: 61  IRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISA 120
           IRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISA
Sbjct: 61  IRPADIQVLSNLGSWLEKHDCDFLIEGHADELGSRNSSIALGLRRAYAVFNYFVARGISA 120

Query: 121 SRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRANT 160
           SRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRANT
Sbjct: 121 SRMKVTSYGKEMPSVYGHDEDAYAKNRRAIVFLKGCRANT 160


>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score = 34.3 bits (77), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 50  DSVFFDTSSYSIRPADIQVLSNLGSWLEKHDCDFL-IEGHADELGSRN---SSIALGLRR 105
           ++  FD SS    P  I VL  +G  L  H  + + I GH D    RN    +  L L R
Sbjct: 233 NTPMFDKSSSIPLPETIVVLQKIGEVLA-HSTEVISIRGHTDASPFRNIARDNWRLSLDR 291

Query: 106 AYAVFNYFVARGISASRM 123
           AY+ +   +  G+S  R+
Sbjct: 292 AYSAYQVLMKSGVSEDRI 309


>gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 190

 Score = 31.6 bits (70), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 85  IEGHADELGSRNSSIALGLRRAYAVFNYFVARGISASR 122
           I+ H D +G+  +++ +   RA  + +Y + RG+S++R
Sbjct: 113 IQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNR 150


>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 581

 Score = 29.6 bits (65), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 31  PDTVLNESSLQEQFSSSVGDSVFFDTSSYSIRPADIQVLSNLGSWL---EKHDCDFLIEG 87
           P T  N   +QE F + +GD    +     I  + I       SWL   +K+     I  
Sbjct: 207 PQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPS 266

Query: 88  HADELGSRNSSIALGLRRAYAVFNYFVARGISASRMKVTSY----GKEMPSVYGHDED 141
                 S+   ++ G  R  A F+      +    +  T++     KE P+++ +++D
Sbjct: 267 KETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKD 324


>gi|254780392|ref|YP_003064805.1| leucyl aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 494

 Score = 25.4 bits (54), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 41  QEQFSSSVGDSVFFDTSSYSIRPA 64
           +EQ  + +G  V FDT   SI+P+
Sbjct: 251 EEQPLAFIGKGVVFDTGGISIKPS 274


>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 324

 Score = 24.6 bits (52), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 11  SAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVF------FDTSSYSIRPA 64
           S IT++S +       + SSP   L+  S+QE+    +G S         +T++YS   A
Sbjct: 48  SPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYS---A 104

Query: 65  DIQVLSNLGSWLE 77
           +  +   L  WLE
Sbjct: 105 EQFIQKVLVEWLE 117


>gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 141

 Score = 21.6 bits (44), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 55  DTSSYSIRPADIQVLSNL 72
           D  +YS+ PAD+ ++S L
Sbjct: 117 DLQNYSMLPADLSLISFL 134


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,339
Number of Sequences: 1233
Number of extensions: 3410
Number of successful extensions: 12
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 160
length of database: 328,796
effective HSP length: 67
effective length of query: 93
effective length of database: 246,185
effective search space: 22895205
effective search space used: 22895205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 35 (18.1 bits)