HHsearch alignment for GI: 254780548 and conserved domain: COG0823
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=560.38 Aligned_cols=410 Identities=33% Similarity=0.557 Sum_probs=377.6
Q ss_pred CCCCCEEEEEEECCCCCCCEEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHC
Q ss_conf 0213316999971586642004630567753--03578999999862017514550865503466761114577887415
Q gi|254780548|r 29 PTSIHAFVKVATNSANYSPVSIAFTKFVSID--ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSL 106 (447)
Q Consensus 29 ~~~a~A~~~i~It~~~~~pi~IAv~~f~~~~--~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~f~~W~~~ 106 (447)
T Consensus 12 ~~~~-a~~~i~~~~~~~~~~Pi~v~~~~~~~~~~~~~~~~~i~~~dl~~sg~f~~~~~~~~~~~~~~~~-~~~~~~w~~~ 89 (425)
T COG0823 12 QVTA-ALVLIVINSGVDSPLPIAVVSFSPDGGALPGEDISGIVAADLKASGKFIPLDRAGYIELPSGAS-EPLPPDWKAL 89 (425)
T ss_pred HHHH-EEEEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHC
T ss_conf 3100-0169985026557775378432765655613666666777787536842014445434677656-4473676542
Q ss_pred CCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 62189999974046622578999841555420000232337778899999998999997504455554417887513676
Q gi|254780548|r 107 GAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVS 186 (447)
Q Consensus 107 gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~~~~ 186 (447)
T Consensus 90 ~~~~~~~~~v~~~~~gs~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ah~~ad~~~e~lt~~~g~~~~~i~~v~~~-~~ 168 (425)
T COG0823 90 GADAVVLGQVTPSPDGSYRSSFQLFDTSTGFQLLGNSLVVTALLLRRAAHTIADAIYEKLTGIKGAFDTRIAYVAES-DG 168 (425)
T ss_pred CCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCEECHHHEECCCCCCCCCCCEEEEEEEC-CC
T ss_conf 74315754574068985899998431655300134430331245333342502011000037654013315665202-46
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEC
Q ss_conf 44210012311455402688621764023455768998489985034676443037711797179974379852444551
Q gi|254780548|r 187 GIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFS 266 (447)
Q Consensus 187 ~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wS 266 (447)
T Consensus 169 ~~~~~~l~~~D~dg~~~~~l~~~~~-~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~~~~P~fs 246 (425)
T COG0823 169 GPLPYELALGDYDGYNQQKLTDSGS-LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGNNGAPAFS 246 (425)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCC-CCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCE-EECCCCCCCCCCCC
T ss_conf 6654415564257755046414653-223754576677268999935888437999467787633-76447766785266
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECC
Q ss_conf 58955677413787303899840477411002577643202552167478997237765331576402567411122035
Q gi|254780548|r 267 SNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKE 346 (447)
Q Consensus 267 PDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~ 346 (447)
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~ 326 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG 326 (425)
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCEEEECCCC
T ss_conf 99968999976899703799936887166400477635897698899889999789997337998889875057542679
Q ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCC-EEEEECCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCC
Q ss_conf 300004687768889999714991579999889996-7996627875543788789989999950898733799998899
Q gi|254780548|r 347 ASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNG 425 (447)
Q Consensus 347 ~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~-~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G 425 (447)
T Consensus 327 ~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~--~~~l~~~s~~g 403 (425)
T COG0823 327 GN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQGG--GSVLSLVSLDG 403 (425)
T ss_pred CC-CCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCC--CCEEEEEECCC
T ss_conf 86-6873889988899986246713466414678874676255544579886877537998457788--73688860456
Q ss_pred CCEEECCC-CCCCCCCCCCCCC
Q ss_conf 71473367-8873675316557
Q gi|254780548|r 426 RNETLINT-PAYASDPQWVGFM 446 (447)
Q Consensus 426 ~~~~~~~~-~g~~~~P~WsP~~ 446 (447)
T Consensus 404 ~~~~~~~~~~~~~~~p~w~~~~ 425 (425)
T COG0823 404 RVSRPLPLADGDVRVPAWSPVL 425 (425)
T ss_pred CEEEEEECCCCCEEEECCCCCC
T ss_conf 2565420466416622356689