HHsearch alignment for GI: 254780548 and conserved domain: COG0823
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion].
Probab=100.00 E-value=5.1e-32 Score=231.35 Aligned_cols=223 Identities=25% Similarity=0.415 Sum_probs=177.5
Q ss_pred EECCCCCEEEEEEEC--CCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCC-EEEEEEECCCCCC
Q ss_conf 576899848998503--4676443037711797179974379852444551589556774137873-0389984047741
Q gi|254780548|r 218 RFSPNQQKVAYATYD--DEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEA-MDIYSVDLQSNAT 294 (447)
Q Consensus 218 ~wSpDG~~Iay~s~~--~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~-~~I~~~d~~~~~~ 294 (447)
T Consensus 153 ~g~~~-~~i~~v~~~~~~~~~~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~ 230 (425)
T COG0823 153 KGAFD-TRIAYVAESDGGPLPYELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR 230 (425)
T ss_pred CCCCC-CEEEEEEECCCCCCCCCEEEECCC-CCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 54013-315665202466654415564257-7550464146532237545766772689999358884379994677876
Q ss_pred CCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 10025776432025521674789972377653315764025674111220353000046877688899997149915799
Q gi|254780548|r 295 ERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIG 374 (447)
Q Consensus 295 ~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~ 374 (447)
T Consensus 231 ~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~ 309 (425)
T COG0823 231 PVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIY 309 (425)
T ss_pred CEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECC-CCCCCCCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 33764477667852669996899997689970379993688716640047-76358976988998899997899973379
Q ss_pred EEECCCCCEEEEECC-CCCCCCEECCCCCEEEEEEEECCCCCEEEEEEEC-CCCCEEECCCCCCCCCCCCCCC
Q ss_conf 998899967996627-8755437887899899999508987337999988-9971473367887367531655
Q gi|254780548|r 375 VMKKDGSQERLLVED-SNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDL-NGRNETLINTPAYASDPQWVGF 445 (447)
Q Consensus 375 ~~~~~g~~~~~lt~~-~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~-~G~~~~~~~~~g~~~~P~WsP~ 445 (447)
T Consensus 310 ~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 310 LYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred EECCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCC--EEEEECCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 9888987505754267986687388998889998624671--3466414678874676255544579886877