HHsearch alignment for GI: 254780548 and conserved domain: COG3490
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=95.69 E-value=0.13 Score=27.81 Aligned_cols=251 Identities=17% Similarity=0.144 Sum_probs=118.7
Q ss_pred HHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 41562189999974046622578999841555420000232337778899999998999997504455554417887513
Q gi|254780548|r 104 NSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSES 183 (447)
Q Consensus 104 ~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~ 183 (447)
T Consensus 30 s~~~~qavfasaf~~-~dgs~g~a~---~~eaGk~v~~~~lp-------aR~Hgi~----~------~p~~~ravafARr 88 (366)
T COG3490 30 SLLRAQAVFASAFDA-RDGSFGAAT---LSEAGKIVFATALP-------ARGHGIA----F------HPALPRAVAFARR 88 (366)
T ss_pred HHHCCCCHHEEEEEC-CCCCEEEEE---ECCCCCEEEEEECC-------CCCCCEE----C------CCCCCCEEEEEEC
T ss_conf 540675330000204-688443788---72577166533041-------0037702----1------7887513799716
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECCCC--CEEEEEECCCCCEEEEEEECCCC--CCCCCEEEECCCCCEEEEECCCCC
Q ss_conf 67644210012311455402688621764--02345576899848998503467--644303771179717997437985
Q gi|254780548|r 184 VVSGIIKNSLCVMDRDGANIRYLTPSRDQ--ILFEPRFSPNQQKVAYATYDDED--ILRVYLMDTRIDRAPKRIGNFRSM 259 (447)
Q Consensus 184 ~~~~~~~~~l~i~d~DG~n~~~l~~~~~~--~~~sP~wSpDG~~Iay~s~~~~~--~~~i~~~~~~~g~~~~~~~~~~~~ 259 (447)
T Consensus 89 PGt-----f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~L-YATEndfd~~rGViGvYd~r~--~fqrvgE~~t~ 160 (366)
T COG3490 89 PGT-----FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLL-YATENDFDPNRGVIGVYDARE--GFQRVGEFSTH 160 (366)
T ss_pred CCC-----EEEEECCCCCCCCEEEECCCCCEEECCCCCCCCCCEE-EEECCCCCCCCCEEEEEECCC--CCCEECCCCCC
T ss_conf 872-----6999877777576787446676351242117987579-952278777874489985200--00021233467
Q ss_pred EEEE---EECCCCCEEEEEEC------CCC---------CEEEEEEECCCCCC-CCCCCC-----CCCCCCEEEECCCCE
Q ss_conf 2444---55158955677413------787---------30389984047741-100257-----764320255216747
Q gi|254780548|r 260 ILAP---RFSSNGKRALISVQ------KDE---------AMDIYSVDLQSNAT-ERLTNT-----LFINISASYSPDSSQ 315 (447)
Q Consensus 260 ~~~p---~wSPDG~~la~~~s------~~g---------~~~I~~~d~~~~~~-~~lT~~-----~~~d~~p~~spDG~~ 315 (447)
T Consensus 161 GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi-RHld~g~dgt- 238 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI-RHLDIGRDGT- 238 (366)
T ss_pred CCCCCEEEEECCCCEEEEECCCEECCCCCCCCCCCHHHCCCCEEEEECCCCCHHHHCCCCHHHHHCCE-EEEEECCCCC-
T ss_conf 76821158835986899957864405555754234322585179984125541221137655532024-4454379983-
Q ss_pred EEEEE----CCCCCCCEEEEEECCCCCCEEEE-----ECCCCE-EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEE
Q ss_conf 89972----37765331576402567411122-----035300-004687768889999714991579999889996799
Q gi|254780548|r 316 IVFES----DREGKEQLYVMQSNGSDQKRISQ-----DKEASY-FDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERL 385 (447)
Q Consensus 316 I~f~S----dr~G~~qiy~~~~~g~~~~rlT~-----~~~~~~-~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~ 385 (447)
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~--vi~da~tG~vv~ 316 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA--VIWDAATGAVVS 316 (366)
T ss_pred EEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCEEEEECCCCCEE--EEEECCCCCEEE
T ss_conf 898777107876687400121589867225798899999986654415535577378745998768--999767784774
Q ss_pred EE
Q ss_conf 66
Q gi|254780548|r 386 LV 387 (447)
Q Consensus 386 lt 387 (447)
T Consensus 317 ~a 318 (366)
T COG3490 317 EA 318 (366)
T ss_pred CC
T ss_conf 14