HHsearch alignment for GI: 254780548 and conserved domain: COG3490
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=95.40 E-value=0.17 Score=27.13 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=90.2
Q ss_pred CEEEEEECCCCCEEEEE-EECC-CCCEEEEEECCCCCE-EEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEE--EEE
Q ss_conf 10012311455402688-6217-640234557689984-899850346764430377117971799743798524--445
Q gi|254780548|r 190 KNSLCVMDRDGANIRYL-TPSR-DQILFEPRFSPNQQK-VAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL--APR 264 (447)
Q Consensus 190 ~~~l~i~d~DG~n~~~l-~~~~-~~~~~sP~wSpDG~~-Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~--~p~ 264 (447)
T Consensus 48 s~g~a~~~eaGk~v~~~~lpaR~Hgi----~~~p~~~ravafAR---rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv 120 (366)
T COG3490 48 SFGAATLSEAGKIVFATALPARGHGI----AFHPALPRAVAFAR---RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV 120 (366)
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCE----ECCCCCCCEEEEEE---CCCCEEEEECCCCCCCCEEEECCCCCEEECCCC
T ss_conf 44378872577166533041003770----21788751379971---687269998777775767874466763512421
Q ss_pred ECCCCCEEEEEECCCCC---EEEEEEECCCCCCCCCCCCCCCC---CCEEEECCCCEEEEEEC------CCCC-------
Q ss_conf 51589556774137873---03899840477411002577643---20255216747899723------7765-------
Q gi|254780548|r 265 FSSNGKRALISVQKDEA---MDIYSVDLQSNATERLTNTLFIN---ISASYSPDSSQIVFESD------REGK------- 325 (447)
Q Consensus 265 wSPDG~~la~~~s~~g~---~~I~~~d~~~~~~~~lT~~~~~d---~~p~~spDG~~I~f~Sd------r~G~------- 325 (447)
T Consensus 121 fs~dG~~LYATE-ndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 121 FSPDGRLLYATE-NDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred CCCCCCEEEEEC-CCCCCCCCEEEEEECC-CCCCEECCCCCCCCCCCEEEEECCCCEEEEECCCEECCCCCCCCCCCHHH
T ss_conf 179875799522-7877787448998520-00002123346776821158835986899957864405555754234322
Q ss_pred --CCEEEEEE-CCCCCCEEEEEC---CCCEEEEEECCCCCEEEEEECCCC-C---EEEEEEECCCCCEEEE
Q ss_conf --33157640-256741112203---530000468776888999971499-1---5799998899967996
Q gi|254780548|r 326 --EQLYVMQS-NGSDQKRISQDK---EASYFDPVWSPQGDLIAFTKFSGE-K---FAIGVMKKDGSQERLL 386 (447)
Q Consensus 326 --~qiy~~~~-~g~~~~rlT~~~---~~~~~~p~wSPdG~~Iaf~~~~~~-~---~~i~~~~~~g~~~~~l 386 (447)
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv-wfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV-WFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred CCCCEEEEECCCCCHHHHCCCCHHHHHCCEEEEEECCCCCE-EEEEEEECCCCCCCCCEEECCCCCCCCCC
T ss_conf 58517998412554122113765553202444543799838-98777107876687400121589867225