HHsearch alignment for GI: 254780548 and conserved domain: COG4946
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown].
Probab=99.83 E-value=1.9e-17 Score=133.90 Aligned_cols=225 Identities=23% Similarity=0.347 Sum_probs=159.6
Q ss_pred CCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEE-ECCCCCEEEEEEECCCCCCCCCEEEECCCCCEE
Q ss_conf 5441788751367644210012311455402688621764023455-768998489985034676443037711797179
Q gi|254780548|r 173 FNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPR-FSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK 251 (447)
Q Consensus 173 f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~-wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~ 251 (447)
T Consensus 234 V~~RvYFlsD~eG~G----nlYSvdldGkDlrrHTnFtdYY---~R~~nsDGkrIvFq-----~~GdIylydP~td~lek 301 (668)
T COG4946 234 VGERVYFLSDHEGVG----NLYSVDLDGKDLRRHTNFTDYY---PRNANSDGKRIVFQ-----NAGDIYLYDPETDSLEK 301 (668)
T ss_pred ECCEEEEEECCCCCC----CEEEECCCCCHHHHCCCCHHCC---CCCCCCCCCEEEEE-----CCCCEEEECCCCCCCEE
T ss_conf 743689976455756----1577426870253237701204---23368888689994-----38717986887673004
Q ss_pred EEECCC-----CCE--EEE-----EECC-CCCEEEEEEC--------------------------------------CCC
Q ss_conf 974379-----852--444-----5515-8955677413--------------------------------------787
Q gi|254780548|r 252 RIGNFR-----SMI--LAP-----RFSS-NGKRALISVQ--------------------------------------KDE 280 (447)
Q Consensus 252 ~~~~~~-----~~~--~~p-----~wSP-DG~~la~~~s--------------------------------------~~g 280 (447)
T Consensus 302 ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dg 381 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDG 381 (668)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCEEEECCCCCCEEEEEECCCCCCEEEECCCC
T ss_conf 54388654563445203777866540467886899996471798877788058737777568999734786227861578
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCE
Q ss_conf 30389984047741100257764320255216747899723776533157640256741112203530000468776888
Q gi|254780548|r 281 AMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDL 360 (447)
Q Consensus 281 ~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~ 360 (447)
T Consensus 382 D-~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~---el~vididngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 382 D-KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF---ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred C-EEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCE---EEEEEEECCCCEEEECCCCCCEEEEEEECCCCEE
T ss_conf 6-68998168816788407866358998768886799976842---7999990599856733232341677887688606
Q ss_pred EEEEECCCC-CEEEEEEECCCCCEEEE-ECCCCCCCCEECCCCCEEEEEEEECCC
Q ss_conf 999971499-15799998899967996-627875543788789989999950898
Q gi|254780548|r 361 IAFTKFSGE-KFAIGVMKKDGSQERLL-VEDSNLQAPTWSPSGRSLIFSRKKDGD 413 (447)
Q Consensus 361 Iaf~~~~~~-~~~i~~~~~~g~~~~~l-t~~~~~e~P~wSPDG~~i~f~~~~~g~ 413 (447)
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLd 512 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLD 512 (668)
T ss_pred EEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 9986686105536899962797389861786546675638887479997403569