HHsearch alignment for GI: 254780548 and conserved domain: COG4946
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown].
Probab=99.66 E-value=5.6e-15 Score=117.30 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=41.7
Q ss_pred HHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEE---CCCCCCCC
Q ss_conf 997504455554417887513676442100123114554026886217640234557689984899850---34676443
Q gi|254780548|r 163 YQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATY---DDEDILRV 239 (447)
Q Consensus 163 ~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~---~~~~~~~i 239 (447)
T Consensus 39 M~n~~l~PDI~GD~IiFt~~D--------dlWe~slk~g~~~ritS~lG-Vvnn~kf~pdGrkvaf~rv~~~ss~~taDl 109 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCD--------DLWEYSLKDGKPLRITSGLG-VVNNPKFSPDGRKVAFSRVMLGSSLQTADL 109 (668)
T ss_pred HHHHHCCCCCCCCEEEEEECH--------HHHHHHHCCCCEEEEECCCC-EECCCCCCCCCCEEEEEEEEECCCCCCCCE
T ss_conf 553412986447679999645--------88776430597167753655-042661889986799999985378765327
Q ss_pred CEEEECCCCCEEEEECCCCCEE-EEEECCCCCEEEEE
Q ss_conf 0377117971799743798524-44551589556774
Q gi|254780548|r 240 YLMDTRIDRAPKRIGNFRSMIL-APRFSSNGKRALIS 275 (447)
Q Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~-~p~wSPDG~~la~~ 275 (447)
T Consensus 110 y~v~~e~Ge-~kRiTyfGr~fT~VaG~~~dg~iiV~T 145 (668)
T COG4946 110 YVVPSEDGE-AKRITYFGRRFTRVAGWIPDGEIIVST 145 (668)
T ss_pred EEEECCCCC-EEEEEEECCCCCEEECCCCCCCEEEEE
T ss_conf 998578994-788998465332020007889789984