HHsearch alignment for GI: 254780548 and conserved domain: PRK00178
>PRK00178 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=861.87 Aligned_cols=426 Identities=27% Similarity=0.484 Sum_probs=391.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCC--CCHHHHHHHHHHHHHHCCCCEEECCHHHCC
Q ss_conf 679999999999999872021331699997158664200463056775--303578999999862017514550865503
Q gi|254780548|r 11 LNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSI--DELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 (447)
Q Consensus 11 ~~m~~~l~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~~~--~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~ 88 (447)
T Consensus 2 ~~l~~~~~l~~~l---~~~~~a~A~l~I~It~g~~~~ipIAI~pF~~~~~~~~~~~i~~iI~~DL~~sG~F~~l~~~~~~ 78 (433)
T PRK00178 2 IKLKRIALLVLCL---LAGGAAAAELNIEITSGSDRAIPIAVVPFGWQGGSVLPEDMAQIIGNDLRNSGYFEPIPRQNMI 78 (433)
T ss_pred CCHHHHHHHHHHH---HHHHHHCEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCHHHCC
T ss_conf 0179999999999---8767622039999934777604069857666687622489999999888628885524835524
Q ss_pred CCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46676111457788741562189999974046622578999841555420000232337778899999998999997504
Q gi|254780548|r 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 (447)
Q Consensus 89 ~~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG 168 (447)
T Consensus 79 ~~p~~~~~-i~f~~W~~lgad~Lv~G~i~~~g-g~~~v~~~L~DV~~~~~l~g~~~~~~~~~~R~~aH~iaD~Iy~~lTG 156 (433)
T PRK00178 79 SLPSQASE-VIFRDWKALGAQYVMVGNIVPAG-GRLQVQYALFNVATEQQVLTGSVSGSTDQLRDMAHYIADQSFEKLTG 156 (433)
T ss_pred CCCCCCCC-CCHHHHHHCCCCEEEEEEEEECC-CEEEEEEEEEECCCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 68885457-57568775098789998799459-97999999997145207603269957899899999999999998309
Q ss_pred CCCCCCCCEEEEEECCC-CCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCC
Q ss_conf 45555441788751367-64421001231145540268862176402345576899848998503467644303771179
Q gi|254780548|r 169 EKGDFNSRILFVSESVV-SGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRID 247 (447)
Q Consensus 169 ~~G~f~triafv~~~~~-~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g 247 (447)
T Consensus 157 ~~G~F~trIayV~~~~~~~~~~~~~l~i~D~DG~n~~~lt~~~~-~~lsP~wSPdg~~iaY~s~~~~~-p~i~i~dl~tg 234 (433)
T PRK00178 157 IKGAFSTRILYVTAERFSGNNTRYTLQRSDYDGARAVTLLQSRE-PILSPRWSPDGKRIAYVSFEQKR-PRIFVQNLDTG 234 (433)
T ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEECCCCCC-CEECCEECCCCCEEEEEEECCCC-CEEEEEECCCC
T ss_conf 97430224999994448888625999984688997279236897-46700075899889999933898-63799987778
Q ss_pred CCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCC
Q ss_conf 71799743798524445515895567741378730389984047741100257764320255216747899723776533
Q gi|254780548|r 248 RAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQ 327 (447)
Q Consensus 248 ~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~q 327 (447)
T Consensus 235 ~~-~~l~~~~g~~~~p~~SPdG~~ia~~ls~~g~~dIy~~~~~~~~~~rlT~~~~idt~Ps~spDG~~i~F~SdR~G~pQ 313 (433)
T PRK00178 235 RR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLRRLTNHWAIDTEPFWGKDGRTIYFTSDRGGKPQ 313 (433)
T ss_pred CE-EEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEECCCCCCCE
T ss_conf 27-98541688566752789998999998069970058998799950476327875565316468988999637899945
Q ss_pred EEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCC--CEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEE
Q ss_conf 157640256741112203530000468776888999971499--157999988999679966278755437887899899
Q gi|254780548|r 328 LYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGE--KFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 (447)
Q Consensus 328 iy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~--~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~~i~ 405 (447)
T Consensus 314 IY~~~~~g~~~~RlT~~g~yn-~~P~wSPdG~~Iaf~~~~~g~~~f~I~~~d~~~g~~~~lt~~~~dE~Ps~sPnG~~i~ 392 (433)
T PRK00178 314 IYKMDVNGGRAERVTFVGNYN-ANPKLSADEKTLVMVHRQDGFTNFHVAAQDLQRGSVRILTETSLDESPTVAPNGTMLI 392 (433)
T ss_pred EEEEECCCCCEEEEECCCCCC-CCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 999989999667721358877-7710868999899999527854379999958999879866899887975999985999
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCC-CCCCCCCCCCCCCC
Q ss_conf 9995089873379999889971473367-88736753165579
Q gi|254780548|r 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVGFMD 447 (447)
Q Consensus 406 f~~~~~g~~~~~l~~~~~~G~~~~~~~~-~g~~~~P~WsP~~~ 447 (447)
T Consensus 393 f~~~~~g~--~~L~~~~~dG~~~~~l~~~~g~~~~P~WsP~l~ 433 (433)
T PRK00178 393 YATRQQGR--GVLMLVSINGRVRLPLPTAQGEVREPSWSPYLN 433 (433)
T ss_pred EEEECCCC--EEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99913997--799999867973687558998777887677779