HHsearch alignment for GI: 254780548 and conserved domain: PRK01029
>PRK01029 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=6e-43 Score=304.45 Aligned_cols=219 Identities=15% Similarity=0.262 Sum_probs=180.2
Q ss_pred CCCEE--EEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEE--ECC---
Q ss_conf 44178--87513676442100123114554026886217640234557689984899850346764430377--117---
Q gi|254780548|r 174 NSRIL--FVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMD--TRI--- 246 (447)
Q Consensus 174 ~tria--fv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~--~~~--- 246 (447)
T Consensus 192 G~~ia~~YvSf~~g~----p~Iyi~dL~tg~r~~v~~f~-G~n~aP~fSPDG~~lA~~ls~~Gn-~dIY~~~~~l~t~~~ 265 (425)
T PRK01029 192 GSNFPYLYVSYKYGV----PKIFLGSLENTEGKKVLALQ-GNQFMPTFSPRKKLLAFISDAYGN-PDLFLQSFSLATGAM 265 (425)
T ss_pred CCCCEEEEEECCCCC----CEEEEEECCCCCEEEEECCC-CCEECCCCCCCCCEEEEEECCCCC-CCEEEEEECCCCCCC
T ss_conf 883159999657898----56999917887268975269-940074088999889999988998-446787502433435
Q ss_pred CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC--CCCCCCCCCCCCCCCEEEECCCCEEEEEECCCC
Q ss_conf 971799743798524445515895567741378730389984047--741100257764320255216747899723776
Q gi|254780548|r 247 DRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQS--NATERLTNTLFINISASYSPDSSQIVFESDREG 324 (447)
Q Consensus 247 g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~--~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G 324 (447)
T Consensus 266 g~~~r~lt~~~~IdtsPswSPDG~~I~FtSDR~G~PQIY~m~~d~~~~~~rr~t~~~~~~~~P~wSPdG~~Iaf~~~~~G 345 (425)
T PRK01029 266 GKPRRLLNEAFGTQGNPSFSPDGTKLVFVSNKDGRPRIYIMQIDPEPQTPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG 345 (425)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCEECCCCCEEEEEEEECC
T ss_conf 65227403577756786387999999999689999428999707888853898436886357257789998999995289
Q ss_pred CCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECC-CCCCCCEECC
Q ss_conf 53315764025674111220353000046877688899997149915799998899967996627-8755437887
Q gi|254780548|r 325 KEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVED-SNLQAPTWSP 399 (447)
Q Consensus 325 ~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~-~~~e~P~wSP 399 (447)
T Consensus 346 ~f~I~v~dl~~g~~~~LT~~~-~d~EsPSwsPNGr~Ivfas~~~G~~~L~~vs~dG~~~~rL~~~~G~~rePaWsp 420 (425)
T PRK01029 346 VRQICIYDLSSGRDYQLTTSP-INKESPSWAIDSNHLVYSAGNSNESELYLLSLITKKTNKIVIGSGEKRFPSWGA 420 (425)
T ss_pred CEEEEEEECCCCCEEEEECCC-CCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCC
T ss_conf 268999989999638971689-977386598898689999778997799999888981787668998757887788