HHsearch alignment for GI: 254780548 and conserved domain: PRK01742
>PRK01742 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=2.4e-43 Score=307.18 Aligned_cols=214 Identities=20% Similarity=0.324 Sum_probs=179.0
Q ss_pred CCEEEEEEECCC--CCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 984899850346--764430377117971799743798524445515895567741378730389984047741100257
Q gi|254780548|r 223 QQKVAYATYDDE--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT 300 (447)
Q Consensus 223 G~~Iay~s~~~~--~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~ 300 (447)
T Consensus 168 ~trIayV~~~~~~~~~~~l~i~D~D-G~N~~~l~~~~~~ilsP~wSPdg~~iaY~S~~~~~~~iyi~dl~tg~~~~l~~~ 246 (430)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYD-GYNQFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGARKVVASF 246 (430)
T ss_pred EEEEEEEEECCCCCCEEEEEECCCC-CCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCC
T ss_conf 0049999821799843799962678-998088535797257201858998899999049997899998578854872257
Q ss_pred CCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 76432025521674789972377653315764025674111220353000046877688899997149915799998899
Q gi|254780548|r 301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG 380 (447)
Q Consensus 301 ~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g 380 (447)
T Consensus 247 ~G~n~aP~~SPDG~~la~sls~~G~~dIY~~dl~~~~~~rLT~~~~i-dt~PswSPDG~~I~F~SdR~G~PQIY~m~~~g 325 (430)
T PRK01742 247 QGHNGAPAFSPDGSRLAFASSKDGVLNIYVMNANGGTPTQLTSGAGN-NTEPSWSPDGNSILFTSDRSGSPQVYRMDASG 325 (430)
T ss_pred CCCCCCCEECCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCCCEEEEECCC
T ss_conf 98634742999997999998169971489998899960783558998-86614878999999993899996479996899
Q ss_pred CCEEEEECCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 96799662787554378878998999995089873379999889971473367887367531655
Q gi|254780548|r 381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 (447)
Q Consensus 381 ~~~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~ 445 (447)
T Consensus 326 ~~~~rit-~~~~~~~~~SpdG~~i~~~~~~------~i~~~dl~tg~~~~lt~~~~dEsPswSPn 383 (430)
T PRK01742 326 GGATLVS-GGRGYSGQISADGKTLVMINGD------NVVKQDLTTGVSEVLSSTFLDESPSISPN 383 (430)
T ss_pred CCEEEEE-CCCCCCCEECCCCCEEEEEECC------CEEEEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf 9626762-6887431288999869999268------57888769897788646888889769999