HHsearch alignment for GI: 254780548 and conserved domain: PRK01742

>PRK01742 tolB translocation protein TolB; Provisional.
Probab=100.00  E-value=2.4e-43  Score=307.18  Aligned_cols=214  Identities=20%  Similarity=0.324  Sum_probs=179.0

Q ss_pred             CCEEEEEEECCC--CCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf             984899850346--764430377117971799743798524445515895567741378730389984047741100257
Q gi|254780548|r  223 QQKVAYATYDDE--DILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNT  300 (447)
Q Consensus       223 G~~Iay~s~~~~--~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~  300 (447)
T Consensus       168 ~trIayV~~~~~~~~~~~l~i~D~D-G~N~~~l~~~~~~ilsP~wSPdg~~iaY~S~~~~~~~iyi~dl~tg~~~~l~~~  246 (430)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYD-GYNQFIVNRSAQPIMSPAWSPDGQRLAYVSFENKKSQLVVQDLNSGARKVVASF  246 (430)
T ss_pred             EEEEEEEEECCCCCCEEEEEECCCC-CCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCC
T ss_conf             0049999821799843799962678-998088535797257201858998899999049997899998578854872257


Q ss_pred             CCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf             76432025521674789972377653315764025674111220353000046877688899997149915799998899
Q gi|254780548|r  301 LFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG  380 (447)
Q Consensus       301 ~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g  380 (447)
T Consensus       247 ~G~n~aP~~SPDG~~la~sls~~G~~dIY~~dl~~~~~~rLT~~~~i-dt~PswSPDG~~I~F~SdR~G~PQIY~m~~~g  325 (430)
T PRK01742        247 QGHNGAPAFSPDGSRLAFASSKDGVLNIYVMNANGGTPTQLTSGAGN-NTEPSWSPDGNSILFTSDRSGSPQVYRMDASG  325 (430)
T ss_pred             CCCCCCCEECCCCCEEEEEECCCCCEEEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCCCEEEEECCC
T ss_conf             98634742999997999998169971489998899960783558998-86614878999999993899996479996899


Q ss_pred             CCEEEEECCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             96799662787554378878998999995089873379999889971473367887367531655
Q gi|254780548|r  381 SQERLLVEDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF  445 (447)
Q Consensus       381 ~~~~~lt~~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~  445 (447)
T Consensus       326 ~~~~rit-~~~~~~~~~SpdG~~i~~~~~~------~i~~~dl~tg~~~~lt~~~~dEsPswSPn  383 (430)
T PRK01742        326 GGATLVS-GGRGYSGQISADGKTLVMINGD------NVVKQDLTTGVSEVLSSTFLDESPSISPN  383 (430)
T ss_pred             CCEEEEE-CCCCCCCEECCCCCEEEEEECC------CEEEEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf             9626762-6887431288999869999268------57888769897788646888889769999