HHsearch alignment for GI: 254780548 and conserved domain: PRK02889
>PRK02889 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=871.44 Aligned_cols=426 Identities=26% Similarity=0.441 Sum_probs=397.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEECCHHHCC
Q ss_conf 77679999999999999872021331699997158664200463056775303578999999862017514550865503
Q gi|254780548|r 9 EELNMKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFVSIDELGGKVSEVVSKDLQRSDVFNLISQDSFK 88 (447)
Q Consensus 9 ~~~~m~~~l~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~~~~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~ 88 (447)
T Consensus 1 ~~~~~~l~~~~~~~~~l~~~~~~A~A~L~IeIt~g~~~~~pIAV~pF~~~~~~~~~i~~II~~DL~~SG~F~~l~~~~~~ 80 (430)
T PRK02889 1 MSLMTKLGLRALVASCLIAAGGAAHAQLNVEITGVGATQFPIATANFANEAGLPQQVTSIVRADLARSGKFSNVDAGGAP 80 (430)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCC
T ss_conf 91799899999999999862102027899999357887072799065788875067999999888728884005843478
Q ss_pred CCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46676111457788741562189999974046622578999841555420000232337778899999998999997504
Q gi|254780548|r 89 QKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITG 168 (447)
Q Consensus 89 ~~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG 168 (447)
T Consensus 81 ~~---~~~~i~f~~W~~lgad~lv~G~v~~~~~g~~~v~~~L~Dv~~~~~l~g~~~~~~~~~~R~~aH~iaD~Iy~~lTG 157 (430)
T PRK02889 81 VP---ETASVDLGAWKAKGADAFVAGSVNREPNGQYEVRFRLYDTVKQQSLGGLSLTVTEDQLRATAHKIADYIYEKLTG 157 (430)
T ss_pred CC---CCCCCCHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99---878868689886089899999999778984899999997466618743389958899899999999999998618
Q ss_pred CCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC
Q ss_conf 45555441788751367644210012311455402688621764023455768998489985034676443037711797
Q gi|254780548|r 169 EKGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDR 248 (447)
Q Consensus 169 ~~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~ 248 (447)
T Consensus 158 ~~G~F~trIayV~~~~~----~~~l~i~D~DG~n~~~lt~~~~-~~lsP~wSPdg~~iaYvS~~~g~-p~iyi~dl~tg~ 231 (430)
T PRK02889 158 VRGVFATRLSYVIKTGN----RYQLQISDSDGQNAQIALRSTE-PIISPAWSPDGTKVAYVSFESKK-PVVYVHDLATGR 231 (430)
T ss_pred CCCCCCCEEEEEECCCC----CEEEEEECCCCCCCEEECCCCC-EEEEEEECCCCCEEEEEEECCCC-CEEEEEECCCCC
T ss_conf 98542026999985798----1589997887888469216896-45851087999989999943998-604999457882
Q ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCE
Q ss_conf 17997437985244455158955677413787303899840477411002577643202552167478997237765331
Q gi|254780548|r 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 (447)
Q Consensus 249 ~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qi 328 (447)
T Consensus 232 ~-~~i~~~~g~n~aP~~SPDG~~la~sls~~Gn~dIy~~~l~~~~~~rLT~~~~idt~PswSPDG~~I~FtSDR~G~PQI 310 (430)
T PRK02889 232 R-YVVSNQKGNNSAPAWSPDGRKLAVALSLDGNTQIYLVNADGSGLRRLTRSSGIDTEPFFSPDGRWIYFTSDRGGAPQI 310 (430)
T ss_pred E-EEEECCCCCCCCCEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCE
T ss_conf 7-897226996657319999988999987799814899999999478850289988765688899989999589999618
Q ss_pred EEEEECC---CCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEEE
Q ss_conf 5764025---6741112203530000468776888999971499157999988999679966278755437887899899
Q gi|254780548|r 329 YVMQSNG---SDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSLI 405 (447)
Q Consensus 329 y~~~~~g---~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~~i~ 405 (447)
T Consensus 311 Y~m~~~G~~~g~~~RiT~~g~yn-~~P~wSPdG~~Iaf~~~~~g~f~I~v~d~~~~~~~~LT~~~~dE~PswsPnG~~i~ 389 (430)
T PRK02889 311 YRMPASGESAGAAQRVTFEGSYN-VSPRISPDGKLLAYISRTGGGFKLYVQDLATGQATALTDTTRDESPSFAANGRYIL 389 (430)
T ss_pred EEEECCCCCCCCEEEECCCCCCC-CCCEECCCCCEEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 99968986546347740478886-77207689998999992589168999979999879810688887976999997999
Q ss_pred EEEEECCCCCEEEEEEECCCCCEEECCC-CCCCCCCCCCCCCC
Q ss_conf 9995089873379999889971473367-88736753165579
Q gi|254780548|r 406 FSRKKDGDTGSKLYSIDLNGRNETLINT-PAYASDPQWVGFMD 447 (447)
Q Consensus 406 f~~~~~g~~~~~l~~~~~~G~~~~~~~~-~g~~~~P~WsP~~~ 447 (447)
T Consensus 390 yss~~~G~--~~L~~v~~dG~~~~~l~~~~G~~~~PaWsP~l~ 430 (430)
T PRK02889 390 YATQSGGR--SVLAAVSSDGRTRQILSVQGGDVREPSWGPFMQ 430 (430)
T ss_pred EEEEECCC--EEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99940995--699999877863588668998767888646669