HHsearch alignment for GI: 254780548 and conserved domain: PRK02889
>PRK02889 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=329.19 Aligned_cols=218 Identities=21% Similarity=0.350 Sum_probs=189.0
Q ss_pred CCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 98489985034676443037711797179974379852444551589556774137873038998404774110025776
Q gi|254780548|r 223 QQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLF 302 (447)
Q Consensus 223 G~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~ 302 (447)
T Consensus 163 ~trIayV~~~-~~~~~l~i~D~D-G~n~~~lt~~~~~~lsP~wSPdg~~iaYvS~~~g~p~iyi~dl~tg~~~~i~~~~g 240 (430)
T PRK02889 163 ATRLSYVIKT-GNRYQLQISDSD-GQNAQIALRSTEPIISPAWSPDGTKVAYVSFESKKPVVYVHDLATGRRYVVSNQKG 240 (430)
T ss_pred CCEEEEEECC-CCCEEEEEECCC-CCCCEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCC
T ss_conf 0269999857-981589997887-88846921689645851087999989999943998604999457882789722699
Q ss_pred CCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCC--
Q ss_conf 432025521674789972377653315764025674111220353000046877688899997149915799998899--
Q gi|254780548|r 303 INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDG-- 380 (447)
Q Consensus 303 ~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g-- 380 (447)
T Consensus 241 ~n~aP~~SPDG~~la~sls~~Gn~dIy~~~l~~~~~~rLT~~~~-idt~PswSPDG~~I~FtSDR~G~PQIY~m~~~G~~ 319 (430)
T PRK02889 241 NNSAPAWSPDGRKLAVALSLDGNTQIYLVNADGSGLRRLTRSSG-IDTEPFFSPDGRWIYFTSDRGGAPQIYRMPASGES 319 (430)
T ss_pred CCCCCEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCC-CCCCEEECCCCCEEEEEECCCCCCCEEEEECCCCC
T ss_conf 66573199999889999877998148999999994788502899-88765688899989999589999618999689865
Q ss_pred -CCEEEEE-CCCCCCCCEECCCCCEEEEEEEECCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCC
Q ss_conf -9679966-2787554378878998999995089873379999889971473367887367531655
Q gi|254780548|r 381 -SQERLLV-EDSNLQAPTWSPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLINTPAYASDPQWVGF 445 (447)
Q Consensus 381 -~~~~~lt-~~~~~e~P~wSPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~~~g~~~~P~WsP~ 445 (447)
T Consensus 320 ~g~~~RiT~~g~yn~~P~wSPdG~~Iaf~~~~~g~--f~I~v~d~~~~~~~~LT~~~~dE~PswsPn 384 (430)
T PRK02889 320 AGAAQRVTFEGSYNVSPRISPDGKLLAYISRTGGG--FKLYVQDLATGQATALTDTTRDESPSFAAN 384 (430)
T ss_pred CCCEEEECCCCCCCCCCEECCCCCEEEEEEEECCE--EEEEEEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 46347740478886772076899989999925891--689999799998798106888879769999