HHsearch alignment for GI: 254780548 and conserved domain: PRK04043
>PRK04043 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=743.62 Aligned_cols=408 Identities=18% Similarity=0.265 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEECCHHHCCCC
Q ss_conf 99999999999998720213316999971586642004630567--7530357899999986201751455086550346
Q gi|254780548|r 13 MKINLCLLLVLIGGFFPTSIHAFVKVATNSANYSPVSIAFTKFV--SIDELGGKVSEVVSKDLQRSDVFNLISQDSFKQK 90 (447)
Q Consensus 13 m~~~l~l~l~l~~~~~~~~a~A~~~i~It~~~~~pi~IAv~~f~--~~~~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~ 90 (447)
T Consensus 1 MKki~l~ll~~~~~-----~aae~~IeIt~~~~~~~~IAVvp~~~~~~~~l~~~i~~II~~DL~rSG~F~~i~~~~~--- 72 (419)
T PRK04043 1 MKKLVLFLLVSLGL-----FAVDATLDIVKKGQKLPKIVVEDSSDSNDANLKLKFFKILVNDLKVSSHFDVSENKTQ--- 72 (419)
T ss_pred CHHHHHHHHHHHHH-----HHCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC---
T ss_conf 95577889999777-----4504799999478787658996168677641368999999875341658512787666---
Q ss_pred CCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCC-HHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 676111457788741562189999974046622578999841555420000232337-7788999999989999975044
Q gi|254780548|r 91 ITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSS-PASWRKIAHTISDDIYQSITGE 169 (447)
Q Consensus 91 ~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~-~~~~R~~ah~~ad~i~~~ltG~ 169 (447)
T Consensus 73 ---~~~~~~~~~w~~~~~d~lv~g~v~~~~~g~~~v~~~L~Dv~~~~~l~~~~~~~~~~~~~r~iAH~iaD~Iye~ltG~ 149 (419)
T PRK04043 73 ---SNYAINYNELKDKKVNLVARYSLAVENGNKLSLRIKLYDANTGSLKFEKDYTINSLDRYPFLAHKSAIDINNYLKAP 149 (419)
T ss_pred ---CCCCCCHHHHHHHCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ---66776856877509979999999987898699999999864771965407970654555778999999999985588
Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEC-CCCCEEEEEEECCCCCCCCCEEEECCCC
Q ss_conf 555544178875136764421001231145540268862176402345576-8998489985034676443037711797
Q gi|254780548|r 170 KGDFNSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFS-PNQQKVAYATYDDEDILRVYLMDTRIDR 248 (447)
Q Consensus 170 ~G~f~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wS-pDG~~Iay~s~~~~~~~~i~~~~~~~g~ 248 (447)
T Consensus 150 ~g~f~~r~i~~~~~~~--~~~~~L~i~D~Dg~n~~~i~~~~~~--i~P~wS~pd~~~i~Y~s~~~~~-p~iy~~dl~tg~ 224 (419)
T PRK04043 150 SIDWMKRFIVFSKYTS--PGKSEIVLADYTLTYQKVIVKGGLN--IFPKWANKEQTAFYYTSYNEDK-PTLLKYNLYTGT 224 (419)
T ss_pred CCCEEEEEEEEEECCC--CCEEEEEEECCCCCCCEEECCCCCC--CCCCEECCCCCEEEEEEECCCC-CEEEEEECCCCC
T ss_conf 7646989999996368--8704899978888875386169972--2576047999899999955998-589999987798
Q ss_pred CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCE
Q ss_conf 17997437985244455158955677413787303899840477411002577643202552167478997237765331
Q gi|254780548|r 249 APKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQL 328 (447)
Q Consensus 249 ~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qi 328 (447)
T Consensus 225 r-~~l~~~~G~~~ap~~SPDG~~la~sls~~Gn~dIy~~~l~~~~~~rLT~~~~Idt~Ps~spDG~~ivF~SdR~G~PQI 303 (419)
T PRK04043 225 K-EKIASSEGMLVASDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTKTQLTNYPGIDVNGNFVEDDSRIVFVSDRLGYPNI 303 (419)
T ss_pred E-EEECCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCEECCCCCEEEEEECCCCCCEE
T ss_conf 8-982147984637869989879999974899951899988999658810278877552268999889999478999629
Q ss_pred EEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECC------CCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCC
Q ss_conf 576402567411122035300004687768889999714------99157999988999679966278755437887899
Q gi|254780548|r 329 YVMQSNGSDQKRISQDKEASYFDPVWSPQGDLIAFTKFS------GEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGR 402 (447)
Q Consensus 329 y~~~~~g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~------~~~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~ 402 (447)
T Consensus 304 Y~~~~~g~~~~Ritf~G~yn---~~~Sp~G~~i~~~~r~~~~~~~~g~f~I~~~~~~~~~~~~LT~~~~dEsPs~sPnG~ 380 (419)
T PRK04043 304 FMKSLGSGSVEQVVFHGRNN---SAVSTYGDYIVYSSRESNNEFGKNVFNLYLISTNSDYIRRLTANGKNQFPRFSSDGG 380 (419)
T ss_pred EEEECCCCCEEEEEECCCCC---CCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 99978999748887647757---763899998999983557655676289999979999779833789778986998995
Q ss_pred EEEEEEEECCCCCEEEEEEECCCCCEEECC-CCCCCCCCCC
Q ss_conf 899999508987337999988997147336-7887367531
Q gi|254780548|r 403 SLIFSRKKDGDTGSKLYSIDLNGRNETLIN-TPAYASDPQW 442 (447)
Q Consensus 403 ~i~f~~~~~g~~~~~l~~~~~~G~~~~~~~-~~g~~~~P~W 442 (447)
T Consensus 381 ~I~y~~~~gg~~--~L~~vs~dg~~~~~lp~~~G~vrePaW 419 (419)
T PRK04043 381 SIMFIKYLGAQS--ALGVIRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred EEEEEEEECCCE--EEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf 999999759965--999998468874884168877648899