HHsearch alignment for GI: 254780548 and conserved domain: PRK04792
>PRK04792 tolB translocation protein TolB; Provisional.
Probab=100.00 E-value=0 Score=324.69 Aligned_cols=216 Identities=21% Similarity=0.337 Sum_probs=96.4
Q ss_pred CCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 41788751367644210012311455402688621764023455768998489985034676443037711797179974
Q gi|254780548|r 175 SRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIG 254 (447)
Q Consensus 175 triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~ 254 (447)
T Consensus 232 ~~iaYvs~~~g~----p~iyi~dl~tg~~~~i~~~~g-~n~aP~fSPdG~~la~~ls~~G~-~dIY~~dl~~~~-~~rlT 304 (450)
T PRK04792 232 KKLAYVSFQNGQ----AEIFIMNIYTGKREKITSYPR-HNGAPRFSPDGKKLALVLSKTGS-LQVYTLDLKTRK-LTQIT 304 (450)
T ss_pred CEEEEEEECCCC----CEEEEEECCCCCEEEEECCCC-CCCCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCC-EEEEC
T ss_conf 989999953998----579999887897887401577-66578708999889999836997-348999889994-58712
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEC
Q ss_conf 37985244455158955677413787303899840477411002577643202552167478997237765331576402
Q gi|254780548|r 255 NFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSN 334 (447)
Q Consensus 255 ~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~ 334 (447)
T Consensus 305 ~~~~idt~PswSPDG~~i~F~SdR~G~PQIY~~~~~g~~~~RlT~~g~~n~~p~~SPdG~~Iaf~~~~~g~f~I~v~~~~ 384 (450)
T PRK04792 305 RGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYRVNLSDGSTKRLTWQGSQNLGGQITPDGRFLVMVNRSDSGFNLAKQDLE 384 (450)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC
T ss_conf 57887877008789988999907899961899988999613432369987676187889989999815890589999479
Q ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEC-CCCCCCCEECC
Q ss_conf 567411122035300004687768889999714991579999889996799662-78755437887
Q gi|254780548|r 335 GSDQKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE-DSNLQAPTWSP 399 (447)
Q Consensus 335 g~~~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~-~~~~e~P~wSP 399 (447)
T Consensus 385 ~~~~~~lt~~~-~d-EsPswsPnGr~ivf~s~~~g~~~l~~vs~dG~~~~~l~~~~g~~~~PaWsP 448 (450)
T PRK04792 385 TGAVQVLTKTL-LD-ESPSIAPNGGMVIYSSIYNKKNVLSMVSIDGRFKARLPATNGRVRAPAWSP 448 (450)
T ss_pred CCCEEEECCCC-CC-CCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCC
T ss_conf 99769802798-78-797799998689999867997089999934880377568998756888768