HHsearch alignment for GI: 254780548 and conserved domain: PRK10115
>PRK10115 protease 2; Provisional.
Probab=98.87 E-value=4.4e-06 Score=57.81 Aligned_cols=262 Identities=11% Similarity=0.110 Sum_probs=128.1
Q ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCC--CCCCCCEEEECCCCC-E
Q ss_conf 4417887513676442100123114554026886217640234557689984899850346--764430377117971-7
Q gi|254780548|r 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDE--DILRVYLMDTRIDRA-P 250 (447)
Q Consensus 174 ~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~--~~~~i~~~~~~~g~~-~ 250 (447)
T Consensus 138 g~~lAys~d~--~Gse~~~i~V~dl~Tg~--~l~d~i~~~~~~i~W~~D~~~fyY~~~~~~~~rp~kv~~H~lGT~~~eD 213 (686)
T PRK10115 138 NTIMALAEDF--LSRRQYGLRFRNLETGN--WYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQD 213 (686)
T ss_pred CCEEEEEEEC--CCCEEEEEEEEECCCCC--CCCEEECCCCCEEEEECCCCEEEEEECCCCCCCHHHEEEEECCCCCCCC
T ss_conf 9778799826--98669999999888886--5763303153207993799899999557677784367986168995448
Q ss_pred EEEECCCC--CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCC--CCC-CCCCCCCCEEEECCCCEEEEEEC----
Q ss_conf 99743798--5244455158955677413787303899840477411--002-57764320255216747899723----
Q gi|254780548|r 251 KRIGNFRS--MILAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATE--RLT-NTLFINISASYSPDSSQIVFESD---- 321 (447)
Q Consensus 251 ~~~~~~~~--~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~--~lT-~~~~~d~~p~~spDG~~I~f~Sd---- 321 (447)
T Consensus 214 ~LI~ee~d~~~~v~~~~s~d~~yl~I~~~~~~tse~~ll~~~~~~~~p~~~~~r~~~~--~y~v~~~~~~~yi~TN~~a~ 291 (686)
T PRK10115 214 ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH--EYSLDHYQHRFYLRSNRHGK 291 (686)
T ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCEEEEECCCCC--EEEEECCCCEEEEEECCCCC
T ss_conf 7999807886589877358886189997348777469997668877854874436797--89875048689998378887
Q ss_pred ------------------------------------------CCCCCCEEEEEECCCCCCEEEEECCCCEEEEEE--CCC
Q ss_conf ------------------------------------------776533157640256741112203530000468--776
Q gi|254780548|r 322 ------------------------------------------REGKEQLYVMQSNGSDQKRISQDKEASYFDPVW--SPQ 357 (447)
Q Consensus 322 ------------------------------------------r~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~w--SPd 357 (447)
T Consensus 292 nfkl~~~~~~~~~~W~~vi~~~~~~~l~~~~~~~d~lv~~~r~~gl~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 371 (686)
T PRK10115 292 NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPE 371 (686)
T ss_pred CCEEEEECCCCHHHCEEECCCCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCC
T ss_conf 84489931689544710037888717847999646499999718831899985899746534158886798976555788
Q ss_pred CCEEE--EEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEECCCCCEE--EEEEEECCCCCEE--EEEEE--CCCCCEE
Q ss_conf 88899--997149915799998899967996627875543788789989--9999508987337--99998--8997147
Q gi|254780548|r 358 GDLIA--FTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTWSPSGRSL--IFSRKKDGDTGSK--LYSID--LNGRNET 429 (447)
Q Consensus 358 G~~Ia--f~~~~~~~~~i~~~~~~g~~~~~lt~~~~~e~P~wSPDG~~i--~f~~~~~g~~~~~--l~~~~--~~G~~~~ 429 (447)
T Consensus 372 s~~~~~~ysS~~t-P~tiy~yD~~t~~~~~~~~~~---v~gfd~~~Y~~~rv~~~SkDGt~VP~siv~rk~~~~dg~~P~ 447 (686)
T PRK10115 372 TSRLRYGYSSMTT-PDTLFELDMDTGERRVLKQTE---VPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPL 447 (686)
T ss_pred CCEEEEEEECCCC-CCCEEEEECCCCCEEEEEECC---CCCCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCE
T ss_conf 8859999825889-981289874899465455224---688565541899999988999783179998068876789877
Q ss_pred ECCCCC---CCCCCCCCCC
Q ss_conf 336788---7367531655
Q gi|254780548|r 430 LINTPA---YASDPQWVGF 445 (447)
Q Consensus 430 ~~~~~g---~~~~P~WsP~ 445 (447)
T Consensus 448 lLyGYG~ygis~~p~Fs~~ 466 (686)
T PRK10115 448 LVYGYGSYGASIDADFSFS 466 (686)
T ss_pred EEEEECCCCCCCCCCCCHH
T ss_conf 9999764666327862665