HHsearch alignment for GI: 254780548 and conserved domain: PRK10153

>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=93.42  E-value=0.46  Score=24.21  Aligned_cols=95  Identities=16%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEE
Q ss_conf             03578999999862017514550865503466761114577887415621899999740466225789998415554200
Q gi|254780548|r   60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI  139 (447)
Q Consensus        60 ~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i  139 (447)
T Consensus       217 ~la~Gi~~klm~~L~~ys~y~v~~k~~y~~~~~~~~-----------gK~l~v--~~~~q~~-~~yL~vey~nn~S~~~~  282 (512)
T PRK10153        217 SLADGIGQLLMADLNTVSTFMVHDKTNYNINEGISP-----------GKTLSV--RVVNQRQ-QCFLSVELRDNADGSVL  282 (512)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCC-----------CCEEEE--EEEECCC-CEEEEEEEEECCCCCEE
T ss_conf             888679999999987524536651000357888677-----------856899--9996599-56999999976887633


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             00232337778899999998999997504
Q gi|254780548|r  140 IGKKFFSSPASWRKIAHTISDDIYQSITG  168 (447)
Q Consensus       140 ~~~~~~~~~~~~R~~ah~~ad~i~~~ltG  168 (447)
T Consensus       283 l~R~Y~it~~~l~~vl~~~l~dLl~aL~i  311 (512)
T PRK10153        283 FSKQYFLTNSNQLSVQNDLSQDLSRALNQ  311 (512)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             05545478478999999999999998589