HHsearch alignment for GI: 254780548 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=93.42 E-value=0.46 Score=24.21 Aligned_cols=95 Identities=16% Similarity=0.322 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEE
Q ss_conf 03578999999862017514550865503466761114577887415621899999740466225789998415554200
Q gi|254780548|r 60 ELGGKVSEVVSKDLQRSDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQI 139 (447)
Q Consensus 60 ~~~~~i~~ii~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i 139 (447)
T Consensus 217 ~la~Gi~~klm~~L~~ys~y~v~~k~~y~~~~~~~~-----------gK~l~v--~~~~q~~-~~yL~vey~nn~S~~~~ 282 (512)
T PRK10153 217 SLADGIGQLLMADLNTVSTFMVHDKTNYNINEGISP-----------GKTLSV--RVVNQRQ-QCFLSVELRDNADGSVL 282 (512)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCC-----------CCEEEE--EEEECCC-CEEEEEEEEECCCCCEE
T ss_conf 888679999999987524536651000357888677-----------856899--9996599-56999999976887633
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00232337778899999998999997504
Q gi|254780548|r 140 IGKKFFSSPASWRKIAHTISDDIYQSITG 168 (447)
Q Consensus 140 ~~~~~~~~~~~~R~~ah~~ad~i~~~ltG 168 (447)
T Consensus 283 l~R~Y~it~~~l~~vl~~~l~dLl~aL~i 311 (512)
T PRK10153 283 FSKQYFLTNSNQLSVQNDLSQDLSRALNQ 311 (512)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 05545478478999999999999998589