HHsearch alignment for GI: 254780548 and conserved domain: PRK12370
>PRK12370 invasion protein regulator; Provisional.
Probab=97.98 E-value=0.0001 Score=48.60 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=78.6
Q ss_pred CEEEEECCCCCCCCH-HHHHHHHHHHHHHC-CCCEEECCHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCEE
Q ss_conf 200463056775303-57899999986201-7514550865503466761114577887415621899999740466225
Q gi|254780548|r 47 PVSIAFTKFVSIDEL-GGKVSEVVSKDLQR-SDVFNLISQDSFKQKITNPDSIPRFQDWNSLGAQVLVTGRVIKEGKDRL 124 (447)
Q Consensus 47 pi~IAv~~f~~~~~~-~~~i~~ii~~DL~~-SG~F~~i~~~~~~~~~~~~~~~~~f~~W~~~gad~lv~G~i~~~~~~~~ 124 (447)
T Consensus 121 ~~siAVLPFr~~~~~~~d~l~~~II~aLSr~rwl~viar~sSft~~~r~~~Di--~~v~reLgv~Y~L~G~V~~~g~-~v 197 (553)
T PRK12370 121 THTLAILPFQMQDQVQSESLHYSIVKGLSQYAPFGLSVLPVTITKNCRSVKDI--LELMDQLRPDYYISGQMIPDGN-DN 197 (553)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCCHH--HHHHHHHCCCEEEEEEEEECCC-EE
T ss_conf 86178805522466441222789999875502001577132122037663319--9999984887697546896287-58
Q ss_pred EEEEEEECCCCCCEECCCCCCCCHHHH-HHHHHHHHHHHHHHHCCC
Q ss_conf 789998415554200002323377788-999999989999975044
Q gi|254780548|r 125 RVEFRLWDVKDRKQIIGKKFFSSPASW-RKIAHTISDDIYQSITGE 169 (447)
Q Consensus 125 ~v~~~L~dv~~~~~i~~~~~~~~~~~~-R~~ah~~ad~i~~~ltG~ 169 (447)
T Consensus 198 rIt~eLiDa~~~~llw~er~d~~~~~~~~~L~~~I~~aL~~~IP~~ 243 (553)
T PRK12370 198 IVQIEIVRVKGYHLLHQESIKLIEHQPASLLQNKIANLLLRCIPGL 243 (553)
T ss_pred EEEEEEEECCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999997168874442111125766679999999999998754406