HHsearch alignment for GI: 254780548 and conserved domain: PRK13614
>PRK13614 lipoprotein LpqB; Provisional.
Probab=97.67 E-value=0.0043 Score=37.79 Aligned_cols=161 Identities=13% Similarity=0.143 Sum_probs=91.1
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCC----
Q ss_conf 4445515895567741378730389984047741100257764320255216747899723776533157640256----
Q gi|254780548|r 261 LAPRFSSNGKRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGS---- 336 (447)
Q Consensus 261 ~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~---- 336 (447)
T Consensus 346 ~s~a~s~~~~~~A~v~--~~~~~l~~~~~-g~~~~~~~~g~~-Lt~PSwD~~g~--vW~ad~~~~~~~~~~~~~g~~~g~ 419 (573)
T PRK13614 346 ASPAESPVSQTVAFLN--GADTTLYTVSP-GQPARRLTSGST-LTRPSFSPQDW--VWTAGPGASGRIHAYQPTGTAEGA 419 (573)
T ss_pred CCCEECCCCCEEEEEC--CCCCEEEEECC-CCCCEEEECCCC-CCCCCCCCCCC--EEEECCCCCCEEEEECCCCCCCCC
T ss_conf 6522356773599986--88857897248-973047633886-56871869998--798116998507873478765566
Q ss_pred CCCEEEEEC----CCCEEEEEECCCCCEEEEEECCCCCEEEEEE--ECC-CCCEEEEECCC-----CC-CCCEECCCCCE
Q ss_conf 741112203----5300004687768889999714991579999--889-99679966278-----75-54378878998
Q gi|254780548|r 337 DQKRISQDK----EASYFDPVWSPQGDLIAFTKFSGEKFAIGVM--KKD-GSQERLLVEDS-----NL-QAPTWSPSGRS 403 (447)
Q Consensus 337 ~~~rlT~~~----~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~--~~~-g~~~~~lt~~~-----~~-e~P~wSPDG~~ 403 (447)
T Consensus 420 ~~~~v~~~~~wl~g~~I~~lrvSrDG~R~Avv~~~~g~~~l~v~~IvR~~~G~p~~L~~p~~~~~~~~v~~~sW~g~~~L 499 (573)
T PRK13614 420 QAPTVTLTADWLRGRTVKSLRVSREGSRALVISENNGKSSVQVTGIVRNEDGTPRELTAPNTLLADVAVDTGQWVGSSTV 499 (573)
T ss_pred CCCCEEECCCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEEEECCCCCEEEECCCEECCCCCCCEEEEECCCCEE
T ss_conf 56531304665689777899978886479999974893189999999899995135034410355676101177179889
Q ss_pred EEEEEEECCCCCEEEEEEECCCCCEE
Q ss_conf 99999508987337999988997147
Q gi|254780548|r 404 LIFSRKKDGDTGSKLYSIDLNGRNET 429 (447)
Q Consensus 404 i~f~~~~~g~~~~~l~~~~~~G~~~~ 429 (447)
T Consensus 500 vVl~~~-~-~~~~q~~~v~~~g~~~~ 523 (573)
T PRK13614 500 AVTALS-A-TSNVVPELLSVAAHYPQ 523 (573)
T ss_pred EEEECC-C-CCCEEEEEEECCCCCCC
T ss_conf 999436-8-98134799966787756