HHsearch alignment for GI: 254780548 and conserved domain: PRK13616
>PRK13616 lipoprotein LpqB; Provisional.
Probab=97.76 E-value=0.0031 Score=38.69 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=89.6
Q ss_pred EEEEEECCCCCEEEEEECC-CCC----EEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEE-
Q ss_conf 2444551589556774137-873----0389984047741100257764320255216747899723776533157640-
Q gi|254780548|r 260 ILAPRFSSNGKRALISVQK-DEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS- 333 (447)
Q Consensus 260 ~~~p~wSPDG~~la~~~s~-~g~----~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~- 333 (447)
T Consensus 351 ~~saavS~d~~~~AaV~~~~~~~~~~~~~L~~G~~-gg~~~~~l~~~t-LTrPSW~~~~d~~WtV~D--G~-~vvR~~r~ 425 (590)
T PRK13616 351 QTSAALSRSGNVVAAVVTLGRGAPDPAASLWVGAL-GGEAVQVLEGHS-LTRPSWSLDADALWVVVD--GN-TVVRVIRS 425 (590)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC-CCCCCEEECCCC-CCCCCCCCCCCEEEEEEC--CC-CEEEEEEC
T ss_conf 35899858888589998437788764127860588-887411104775-467727789966999933--98-24898831
Q ss_pred -CCCCCCEE-------EEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEC----C-CCCC---CCEE
Q ss_conf -25674111-------22035300004687768889999714991579999889996799662----7-8755---4378
Q gi|254780548|r 334 -NGSDQKRI-------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE----D-SNLQ---APTW 397 (447)
Q Consensus 334 -~g~~~~rl-------T~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~----~-~~~e---~P~w 397 (447)
T Consensus 426 ~~~G~~~~~~Vd~~~l~~~~~g~Is~lRlS~DGvR~A~iv--dG~v~vg~V~r~~~G~~~l~~~r~~~p~l~~~a~sl~W 503 (590)
T PRK13616 426 PATGQPARIPVDSSAVASRFPGPISELQLSRDGVRAAMII--DGKVYLAVVEQTQPGQYALTYPRELGFGLGETAVSLSW 503 (590)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEE--CCEEEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEEEE
T ss_conf 7888437775011024656898346999778860799998--89899999982699857875415417454684577355
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEC
Q ss_conf 8789989999950898733799998899714733
Q gi|254780548|r 398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 (447)
Q Consensus 398 SPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~ 431 (447)
T Consensus 504 ~~~~~LvV-g~-~~~~--~pv~~V~~DGs~~s~~ 533 (590)
T PRK13616 504 RTGDDILV-GR-SDPD--HPVWYVNLDGSNASDL 533 (590)
T ss_pred CCCCEEEE-EE-ECCC--CEEEEEEECCCCCCCC
T ss_conf 58986999-70-1698--7259998078666678