HHsearch alignment for GI: 254780548 and conserved domain: PRK13616

>PRK13616 lipoprotein LpqB; Provisional.
Probab=97.76  E-value=0.0031  Score=38.69  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             EEEEEECCCCCEEEEEECC-CCC----EEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEE-
Q ss_conf             2444551589556774137-873----0389984047741100257764320255216747899723776533157640-
Q gi|254780548|r  260 ILAPRFSSNGKRALISVQK-DEA----MDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQS-  333 (447)
Q Consensus       260 ~~~p~wSPDG~~la~~~s~-~g~----~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~-  333 (447)
T Consensus       351 ~~saavS~d~~~~AaV~~~~~~~~~~~~~L~~G~~-gg~~~~~l~~~t-LTrPSW~~~~d~~WtV~D--G~-~vvR~~r~  425 (590)
T PRK13616        351 QTSAALSRSGNVVAAVVTLGRGAPDPAASLWVGAL-GGEAVQVLEGHS-LTRPSWSLDADALWVVVD--GN-TVVRVIRS  425 (590)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCC-CCCCCEEECCCC-CCCCCCCCCCCEEEEEEC--CC-CEEEEEEC
T ss_conf             35899858888589998437788764127860588-887411104775-467727789966999933--98-24898831


Q ss_pred             -CCCCCCEE-------EEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEC----C-CCCC---CCEE
Q ss_conf             -25674111-------22035300004687768889999714991579999889996799662----7-8755---4378
Q gi|254780548|r  334 -NGSDQKRI-------SQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQERLLVE----D-SNLQ---APTW  397 (447)
Q Consensus       334 -~g~~~~rl-------T~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~----~-~~~e---~P~w  397 (447)
T Consensus       426 ~~~G~~~~~~Vd~~~l~~~~~g~Is~lRlS~DGvR~A~iv--dG~v~vg~V~r~~~G~~~l~~~r~~~p~l~~~a~sl~W  503 (590)
T PRK13616        426 PATGQPARIPVDSSAVASRFPGPISELQLSRDGVRAAMII--DGKVYLAVVEQTQPGQYALTYPRELGFGLGETAVSLSW  503 (590)
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEE--CCEEEEEEEEECCCCCEEEEEHHHHCCCCCCCEEEEEE
T ss_conf             7888437775011024656898346999778860799998--89899999982699857875415417454684577355


Q ss_pred             CCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEC
Q ss_conf             8789989999950898733799998899714733
Q gi|254780548|r  398 SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI  431 (447)
Q Consensus       398 SPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~  431 (447)
T Consensus       504 ~~~~~LvV-g~-~~~~--~pv~~V~~DGs~~s~~  533 (590)
T PRK13616        504 RTGDDILV-GR-SDPD--HPVWYVNLDGSNASDL  533 (590)
T ss_pred             CCCCEEEE-EE-ECCC--CEEEEEEECCCCCCCC
T ss_conf             58986999-70-1698--7259998078666678