HHsearch alignment for GI: 254780548 and conserved domain: TIGR02658
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain; InterPro: IPR013476 Methylamine dehydrogenase is a periplasmic enzyme found in Gram-negative methylotrophs . It is induced when grown on methylamine as a growth substrate and catalyses the oxidative deamination of primary amines to their corresponding aldehydes. ; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0042597 periplasmic space.
Probab=98.17 E-value=0.00058 Score=43.58 Aligned_cols=224 Identities=17% Similarity=0.262 Sum_probs=115.9
Q ss_pred EECCCCCE-EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 31145540-26886217640234557689984899850346764430377117971799743798524445515895567
Q gi|254780548|r 195 VMDRDGAN-IRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRAL 273 (447)
Q Consensus 195 i~d~DG~n-~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la 273 (447)
T Consensus 97 ~ADI~~P~~PRFL~G~~~---~~~~L~~d~K~lLF~QFs--P~PaVG~VDL~~K-~F~~~~~vPDCY---~IFP~~n~~F 167 (360)
T TIGR02658 97 IADIDLPEGPRFLVGVYP---RMASLSPDNKTLLFYQFS--PSPAVGLVDLEGK-AFVKMLDVPDCY---HIFPTANDTF 167 (360)
T ss_pred EEEEECCCCCEEEEECCC---HHEECCCCCCEEEEEECC--CCCCEEEEECCCC-CEEEEECCCCCC---EEECCCCCCE
T ss_conf 544567888735674121---010135577568898338--8882046884776-401221388864---1306778960
Q ss_pred EEECCCCCEEEEEEECCCCCC-CCCCC--CCC---CCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEE----
Q ss_conf 741378730389984047741-10025--776---43202552167478997237765331576402567411122----
Q gi|254780548|r 274 ISVQKDEAMDIYSVDLQSNAT-ERLTN--TLF---INISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQ---- 343 (447)
Q Consensus 274 ~~~s~~g~~~I~~~d~~~~~~-~~lT~--~~~---~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~---- 343 (447)
T Consensus 168 fMHCRDGSL~~~~~~~~G~~~p~k~T~~FH~E~eyL~~~P~YS~~~grLvWPT-Y~Gk--IfQ~~Ls~~~a~Fl~~~E~f 244 (360)
T TIGR02658 168 FMHCRDGSLLKVGYDSKGNSKPIKPTKVFHKEDEYLINNPAYSNKSGRLVWPT-YEGK--IFQIDLSSKDAKFLKAIEAF 244 (360)
T ss_pred EEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEECCC-CCCE--EEEEEECCCCCCCCCHHHHH
T ss_conf 68801554033555578871665321553075622443763307888266441-0675--89998446875101044553
Q ss_pred -ECCCCEEEEEECCCC-CEEEEEECCCCCE----------------EEEEEECCCCC-EEEEECCCCCCCCEECCCCCEE
Q ss_conf -035300004687768-8899997149915----------------79999889996-7996627875543788789989
Q gi|254780548|r 344 -DKEASYFDPVWSPQG-DLIAFTKFSGEKF----------------AIGVMKKDGSQ-ERLLVEDSNLQAPTWSPSGRSL 404 (447)
Q Consensus 344 -~~~~~~~~p~wSPdG-~~Iaf~~~~~~~~----------------~i~~~~~~g~~-~~~lt~~~~~e~P~wSPDG~~i 404 (447)
T Consensus 245 T~~E---k~~~WrPGGWQ~vAyH~~~~~iylL~DQR~~w~H~~~SR~~fV~Da~tGkRl~~iel~HEIdsi~VsQD~kP~ 321 (360)
T TIGR02658 245 TDAE---KKDGWRPGGWQQVAYHKARDEIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELKHEIDSIAVSQDAKPL 321 (360)
T ss_pred HHHH---HHCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCEEECEEEECCCCCCC
T ss_conf 3367---7556877873225677214738998612000334565128999967877311002111123205641078884
Q ss_pred EEEEEECCCCCEEEEEEEC-CCCCEEECCCCCC
Q ss_conf 9999508987337999988-9971473367887
Q gi|254780548|r 405 IFSRKKDGDTGSKLYSIDL-NGRNETLINTPAY 436 (447)
Q Consensus 405 ~f~~~~~g~~~~~l~~~~~-~G~~~~~~~~~g~ 436 (447)
T Consensus 322 LYA~S~~~K---tLf~fda~~Gk~~~~v~~LG~ 351 (360)
T TIGR02658 322 LYALSTEDK---TLFIFDAVTGKELSSVDELGR 351 (360)
T ss_pred EEEEECCCC---EEEEECCCCCCHHHHHHHHCC
T ss_conf 578524873---688863757712343775178