HHsearch alignment for GI: 254780548 and conserved domain: TIGR03300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.17 E-value=0.2 Score=26.67 Aligned_cols=235 Identities=14% Similarity=0.183 Sum_probs=113.5
Q ss_pred EEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEECC-CCCEEEE
Q ss_conf 999841555420000232337778899999998999997504455554417887513676442100123114-5540268
Q gi|254780548|r 127 EFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKGDFNSRILFVSESVVSGIIKNSLCVMDR-DGANIRY 205 (447)
Q Consensus 127 ~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G~f~triafv~~~~~~~~~~~~l~i~d~-DG~n~~~ 205 (447)
T Consensus 116 ~l~Ald~~tG~~~W~~~~~~~v------------------~s~P~v~~g-~V~v~t~dg------~l~ald~~tG~~~W~ 170 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSEV------------------LSPPLVANG-LVVVRTNDG------RLTALDAATGERLWT 170 (377)
T ss_pred EEEEEECCCCCEEEEEECCCCE------------------ECCCEEECC-EEEEEECCC------EEEEEECCCCCEEEE
T ss_conf 5999997799599999079840------------------458788699-999997899------699997879978998
Q ss_pred EEECCCCC-----EEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEE--EEECCCC---------CEEEEEECCCC
Q ss_conf 86217640-----23455768998489985034676443037711797179--9743798---------52444551589
Q gi|254780548|r 206 LTPSRDQI-----LFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPK--RIGNFRS---------MILAPRFSSNG 269 (447)
Q Consensus 206 l~~~~~~~-----~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~--~~~~~~~---------~~~~p~wSPDG 269 (447)
T Consensus 171 ~~-~~~p~ltlrg~s~p~~~~~---~v~~g~~~G---~l~ald~~tG~~~W~~~v~~~~G~telerl~Di~~~P~v~--~ 241 (377)
T TIGR03300 171 YS-RVTPALTLRGSASPVIADG---GVLVGFAGG---KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G 241 (377)
T ss_pred EE-CCCCCCCCCCCCCCEEECC---EEEEECCCC---EEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCC--C
T ss_conf 52-4687510156555379899---999982699---8999999999399881003566776421100124676213--9
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEE-CCCC
Q ss_conf 556774137873038998404774110025776432025521674789972377653315764025674111220-3530
Q gi|254780548|r 270 KRALISVQKDEAMDIYSVDLQSNATERLTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKRISQD-KEAS 348 (447)
Q Consensus 270 ~~la~~~s~~g~~~I~~~d~~~~~~~~lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~rlT~~-~~~~ 348 (447)
T Consensus 242 ~~v-y~~s~~G--~l~a~d~~sG~~~W~~~~ss-~~~~~v--~~~~vy-v~~~~g--~l~Ald~~tG~~~W~~~~l~~r~ 312 (377)
T TIGR03300 242 GQV-YAVSYQG--RVAALDLRSGRVLWKRDASS-YQGPAV--DDNRLY-VTDADG--VVVALDRRSGSELWKNDELKYRQ 312 (377)
T ss_pred CEE-EEEECCC--EEEEEECCCCCEEEEEECCC-CCCEEE--ECCEEE-EECCCC--CEEEEECCCCCEEECCCCCCCCC
T ss_conf 889-9970488--49998721694730152675-444058--756199-986898--47999989995780145556655
Q ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEE-EE-ECC-CCCCCCEECCCCCEEEEEEEECC
Q ss_conf 000468776888999971499157999988999679-96-627-87554378878998999995089
Q gi|254780548|r 349 YFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQER-LL-VED-SNLQAPTWSPSGRSLIFSRKKDG 412 (447)
Q Consensus 349 ~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~~-~l-t~~-~~~e~P~wSPDG~~i~f~~~~~g 412 (447)
T Consensus 313 ~s~P~~~--g~~v~vgd~~G---~l~~ld~~tG~~~~r~~~~g~~i~~~Pvv~~-~-~-l~v~s~~G 371 (377)
T TIGR03300 313 LTAPAVV--GGYLVVGDFEG---YLHWLSREDGSFVARLKTDGSGIASPPVVVG-D-G-LLVQTRDG 371 (377)
T ss_pred CCCCEEE--CCEEEEECCCC---EEEEEECCCCCEEEEEECCCCCEEECCEEEC-C-E-EEEEECCC
T ss_conf 4488898--99999996898---8999998889799999858995066889989-9-9-99994993