HHsearch alignment for GI: 254780548 and conserved domain: cd00200
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto.
Probab=99.38 E-value=6.6e-09 Score=76.67 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=138.7
Q ss_pred HHHCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCEEEEE
Q ss_conf 741562189999974046622578999841555420000232337778899999998999997504455-5544178875
Q gi|254780548|r 103 WNSLGAQVLVTGRVIKEGKDRLRVEFRLWDVKDRKQIIGKKFFSSPASWRKIAHTISDDIYQSITGEKG-DFNSRILFVS 181 (447)
Q Consensus 103 W~~~gad~lv~G~i~~~~~~~~~v~~~L~dv~~~~~i~~~~~~~~~~~~R~~ah~~ad~i~~~ltG~~G-~f~triafv~ 181 (447)
T Consensus 17 f~~~~-~~l~sg~~----Dg~----v~iw~~~~~~~~~~--~~~h~~~---------------i~~i~~~~~~~~i~~~~ 70 (289)
T cd00200 17 FSPDG-KLLATGSG----DGT----IKVWDLETGELLRT--LKGHTGP---------------VRDVAASADGTYLASGS 70 (289)
T ss_pred ECCCC-CEEEEECC----CCE----EEEEECCCCCEEEE--EECCCCC---------------EEEEEEECCCCEEEEEE
T ss_conf 94898-99999908----994----99999999919899--9478897---------------58999935999999997
Q ss_pred ECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEE
Q ss_conf 13676442100123114554026886217640234557689984899850346764430377117971799743798524
Q gi|254780548|r 182 ESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMIL 261 (447)
Q Consensus 182 ~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~ 261 (447)
T Consensus 71 ----~d---~~v~i~d~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~---d~~i~i~~~~~~~~~~~~~~~~~~i~ 139 (289)
T cd00200 71 ----SD---KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-R---DKTIKVWDVETGKCLTTLRGHTDWVN 139 (289)
T ss_pred ----CC---CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEC-C---CCCEEEEECCCCCEEEEECCCCCCEE
T ss_conf ----99---9699975688828899927888488999999999999984-8---98189874058617776068889725
Q ss_pred EEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCC-CCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEEECCCCCCE
Q ss_conf 44551589556774137873038998404774110-02577643202552167478997237765331576402567411
Q gi|254780548|r 262 APRFSSNGKRALISVQKDEAMDIYSVDLQSNATER-LTNTLFINISASYSPDSSQIVFESDREGKEQLYVMQSNGSDQKR 340 (447)
Q Consensus 262 ~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~~~~~-lT~~~~~d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~~g~~~~r 340 (447)
T Consensus 140 ~~~~~~~~~~i~-~~~~dg~--v~i~d~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~~~~d~--~i~i~d~~~~~~~~ 213 (289)
T cd00200 140 SVAFSPDGTFVA-SSSQDGT--IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSSSDG--TIKLWDLSTGKCLG 213 (289)
T ss_pred EEEECCCCCEEE-EECCCCE--EEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCE-EECCCC--EEEEEECCCCCEEE
T ss_conf 999837998999-9738997--99999999949899986155632688889998147-415999--89999999992999
Q ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEEC-CCCCCCCEECCCCCEEEEEEEECC
Q ss_conf 1220353000046877688899997149915799998899967-99662-787554378878998999995089
Q gi|254780548|r 341 ISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVE-DSNLQAPTWSPSGRSLIFSRKKDG 412 (447)
Q Consensus 341 lT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~-~~lt~-~~~~e~P~wSPDG~~i~f~~~~~g 412 (447)
T Consensus 214 ~~~~~~~~i~~i~~~~~~~~~~~~~~d-~--~i~i~d~~~~~~~~~~~~h~~~V~~~~~~~~~~~l~t-~s~D~ 283 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGSED-G--TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS-GSADG 283 (289)
T ss_pred EEECCCCEEEEEEECCCCCEEEEECCC-C--EEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEEEE-EECCC
T ss_conf 991788507889817996599999299-9--8999999999099999589998999999189899999-93599