HHsearch alignment for GI: 254780548 and conserved domain: pfam02239
>pfam02239 Cytochrom_D1 Cytochrome D1 heme domain. Cytochrome cd1 (nitrite reductase) catalyses the conversion of nitrite to nitric oxide in the nitrogen cycle. This family represents the d1 heme binding domain of cytochrome cd1, in which His/Tyr side chains ligate the d1 heme iron of the active site in the oxidized state.
Probab=97.92 E-value=0.0017 Score=40.46 Aligned_cols=201 Identities=14% Similarity=0.217 Sum_probs=103.0
Q ss_pred EEEEEECCC-CCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEE-----------EECCCC
Q ss_conf 001231145-54026886217640234557689984899850346764430377117971799-----------743798
Q gi|254780548|r 191 NSLCVMDRD-GANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKR-----------IGNFRS 258 (447)
Q Consensus 191 ~~l~i~d~D-G~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~-----------~~~~~~ 258 (447)
T Consensus 150 geIw~Vdy~d~~~~~~~~i~~~~~lhD~~~d~~~Ryfl~aa~-~~n--ki~vvd~~~~k~v~l~d~gk~~~p~~~~n~pH 226 (369)
T pfam02239 150 GEIWLVDYSDGKNLKTTFIGAAKFLHDGGFDPDGRYFLAAAN-ASD--KIAVWDTKRGKLVALLDTGKTPHPGPGANMPH 226 (369)
T ss_pred CEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECC-CCC--CEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 979999787688740158665445646664798879987425-887--06589558880899733686548887489968
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCC-CCCCCCCCCCCCCCCEEEECCCCEEEEE--ECCCCCCCEEEEEECC
Q ss_conf 524445515895567741378730389984047-7411002577643202552167478997--2377653315764025
Q gi|254780548|r 259 MILAPRFSSNGKRALISVQKDEAMDIYSVDLQS-NATERLTNTLFINISASYSPDSSQIVFE--SDREGKEQLYVMQSNG 335 (447)
Q Consensus 259 ~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~-~~~~~lT~~~~~d~~p~~spDG~~I~f~--Sdr~G~~qiy~~~~~g 335 (447)
T Consensus 227 ~~~G~vW~~~~~g~~~ip~ig-~~~v~v~d~~~WkvVk~I~~-~G~g~FvkthP~s~~lwvD~~~~p-~~~~v~viD~~t 303 (369)
T pfam02239 227 LEGGPVWTTSHLGDFVTPLIG-TDPVLVHDLQNWKQVKEIDV-AGGGLFVKTHPDSRYLWVDTFLNP-DNDSVAVIDSET 303 (369)
T ss_pred CCCCCEEEECCCCCEEEEECC-CCCCCCCCCCCCEEEEEEEC-CCCCEEEECCCCCCCEEEECCCCC-CCCEEEEEECCC
T ss_conf 887630785687844443146-79777677534469789815-898479876989963898667799-988799998887
Q ss_pred CC-CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEECCCCCCCCEECCCCCEEEE
Q ss_conf 67-4111220353000046877688899997149915799998899967-99662787554378878998999
Q gi|254780548|r 336 SD-QKRISQDKEASYFDPVWSPQGDLIAFTKFSGEKFAIGVMKKDGSQE-RLLVEDSNLQAPTWSPSGRSLIF 406 (447)
Q Consensus 336 ~~-~~rlT~~~~~~~~~p~wSPdG~~Iaf~~~~~~~~~i~~~~~~g~~~-~~lt~~~~~e~P~wSPDG~~i~f 406 (447)
T Consensus 304 l~vv~~l~~~~gk~v~H~Ef~~~G~evwvSvw~~~~-aivVyD~~Tlk~~~~i--------~~~tPsGkfNv~ 367 (369)
T pfam02239 304 LEIILPLAPWPGLVVVHMEFNKRGDEVWLSVWDGKG-ALVVYDDKTLKLKKVI--------PLNTPSGKFNVY 367 (369)
T ss_pred CCEEECCCCCCCCCEECCEECCCCCEEEEEEECCCC-EEEEEECCCCEEEEEE--------ECCCCCEEEECC
T ss_conf 527770330489838854199999999999867999-6999989884699999--------826998775224