HHsearch alignment for GI: 254780548 and conserved domain: pfam10647
>pfam10647 Gmad1 Lipoprotein LpqB beta-propeller domain. The Gmad1 domain is found associated with the GerMN family, pfam10646, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.49 E-value=6.9e-05 Score=49.78 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=112.4
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 02345576899848998503467644303771179717997437985244455158955677413787303899840477
Q gi|254780548|r 213 ILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRIGNFRSMILAPRFSSNGKRALISVQKDEAMDIYSVDLQSN 292 (447)
Q Consensus 213 ~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~~~ 292 (447)
T Consensus 25 ~~~s~AvS~d~~~~AaV~~--~~~~~L~vg~~g--~~~~~~~~g~~-lt~PSwd~~g-~v-Wtv~~~~~-~~r~~~~~~g 96 (254)
T pfam10647 25 TVVSAAVSRDGQLVAAVAT--DDGSTLYVGPLG--GPATVVLTGRS-LTRPSWDLDG-WV-WTVGDGDT-VARLLRSATG 96 (254)
T ss_pred CCCEEEECCCCCEEEEEEC--CCCCEEEECCCC--CCCEEEECCCC-CCCCEECCCC-CE-EEEECCCC-EEEEEECCCC
T ss_conf 6312588888876999935--998689972689--87457772786-4687086999-88-99956997-0478987899
Q ss_pred CCCCC-CCCCCC----CCCEEEECCCCEEEEEECCCCCCCEEEEEE---CCCCCCEEEEEC------CCCEEEEEECCCC
Q ss_conf 41100-257764----320255216747899723776533157640---256741112203------5300004687768
Q gi|254780548|r 293 ATERL-TNTLFI----NISASYSPDSSQIVFESDREGKEQLYVMQS---NGSDQKRISQDK------EASYFDPVWSPQG 358 (447)
Q Consensus 293 ~~~~l-T~~~~~----d~~p~~spDG~~I~f~Sdr~G~~qiy~~~~---~g~~~~rlT~~~------~~~~~~p~wSPdG 358 (447)
T Consensus 97 ~~~~~~Vd~~~l~~~~I~~lrvSrDG~R~A~vv~~~~~~~v~va~V~R~~~G~~~~l~~p~~~~~~~~~~v~~~~W~~~~ 176 (254)
T pfam10647 97 TTVPVEVDAPALSAGRITELRVSRDGTRAAVVVERGGGGQVYVAGVERDGGGLPRALTAPLRLAPGLGEPATSLAWRSDD 176 (254)
T ss_pred CEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEECEEEECCCCCCCEEEEEECCCC
T ss_conf 61678963443489706899967888689999996899779999998479995467401058326778740165865899
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCEE-CCCCCEEEEEEEECCCCCEEEEEEECCCCCEEEC
Q ss_conf 889999714991579999889996799662787554378-8789989999950898733799998899714733
Q gi|254780548|r 359 DLIAFTKFSGEKFAIGVMKKDGSQERLLVEDSNLQAPTW-SPSGRSLIFSRKKDGDTGSKLYSIDLNGRNETLI 431 (447)
Q Consensus 359 ~~Iaf~~~~~~~~~i~~~~~~g~~~~~lt~~~~~e~P~w-SPDG~~i~f~~~~~g~~~~~l~~~~~~G~~~~~~ 431 (447)
T Consensus 177 ~LvV~~~~~~~~v~-~~v~~DGs~~~~lps~-~~~~~v~av~~~~~~~~~t~~~g-----v~~l~~~g~~W~~v 243 (254)
T pfam10647 177 SLVVLGRAPGGPVQ-YEVSVDGSPSTQLPSG-NLGAPVIAVAASPSTVYVTDDGA-----LLQLSRSGQGWREV 243 (254)
T ss_pred EEEEEECCCCCCEE-EEEECCCCCCCCCCCC-CCCCCEEEECCCCCEEEEECCCC-----EEEECCCCCCCEEC
T ss_conf 89998358999267-8995278667667877-76566688517984389984896-----69948999975697