HHsearch alignment for GI: 254780548 and conserved domain: pfam10647
>pfam10647 Gmad1 Lipoprotein LpqB beta-propeller domain. The Gmad1 domain is found associated with the GerMN family, pfam10646, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.90 E-value=0.0018 Score=40.28 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=100.9
Q ss_pred CCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEE
Q ss_conf 44178875136764421001231145540268862176402345576899848998503467644303771179717997
Q gi|254780548|r 174 NSRILFVSESVVSGIIKNSLCVMDRDGANIRYLTPSRDQILFEPRFSPNQQKVAYATYDDEDILRVYLMDTRIDRAPKRI 253 (447)
Q Consensus 174 ~triafv~~~~~~~~~~~~l~i~d~DG~n~~~l~~~~~~~~~sP~wSpDG~~Iay~s~~~~~~~~i~~~~~~~g~~~~~~ 253 (447)
T Consensus 35 ~~~~AaV~~~~-----~~~L~vg~~g~-~~~~~~~g~-~-lt~PSwd~~g-~v-Wtv~~~~~~~r~~~--~~~g~~~~~~ 102 (254)
T pfam10647 35 GQLVAAVATDD-----GSTLYVGPLGG-PATVVLTGR-S-LTRPSWDLDG-WV-WTVGDGDTVARLLR--SATGTTVPVE 102 (254)
T ss_pred CCEEEEEECCC-----CCEEEECCCCC-CCEEEECCC-C-CCCCEECCCC-CE-EEEECCCCEEEEEE--CCCCCEEEEE
T ss_conf 87699993599-----86899726898-745777278-6-4687086999-88-99956997047898--7899616789
Q ss_pred ECCCC----CEEEEEECCCCCEEEEEECCCCCEEEEEEECC---CCCCCCCCCCC-------CCCCCEEEECCCCEEEEE
Q ss_conf 43798----52444551589556774137873038998404---77411002577-------643202552167478997
Q gi|254780548|r 254 GNFRS----MILAPRFSSNGKRALISVQKDEAMDIYSVDLQ---SNATERLTNTL-------FINISASYSPDSSQIVFE 319 (447)
Q Consensus 254 ~~~~~----~~~~p~wSPDG~~la~~~s~~g~~~I~~~d~~---~~~~~~lT~~~-------~~d~~p~~spDG~~I~f~ 319 (447)
T Consensus 103 Vd~~~l~~~~I~~lrvSrDG~R~A~vv~~~~~~~v~va~V~R~~~G~~~~l~~p~~~~~~~~~~v~~~~W~~~~~LvV~~ 182 (254)
T pfam10647 103 VDAPALSAGRITELRVSRDGTRAAVVVERGGGGQVYVAGVERDGGGLPRALTAPLRLAPGLGEPATSLAWRSDDSLVVLG 182 (254)
T ss_pred EECCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCEEEEECEEEECCCCCCCEEEEEECCCCEEEEEE
T ss_conf 63443489706899967888689999996899779999998479995467401058326778740165865899899983
Q ss_pred ECCCCCCCEEEEEECCCCCCEEEEECCCCEEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf 237765331576402567411122035300004687-7688899997149915799998899967996
Q gi|254780548|r 320 SDREGKEQLYVMQSNGSDQKRISQDKEASYFDPVWS-PQGDLIAFTKFSGEKFAIGVMKKDGSQERLL 386 (447)
Q Consensus 320 Sdr~G~~qiy~~~~~g~~~~rlT~~~~~~~~~p~wS-PdG~~Iaf~~~~~~~~~i~~~~~~g~~~~~l 386 (447)
T Consensus 183 ~-~~~~~v~~~v~~DGs~~~~lps---~~~~~~v~av~~~~~~~~~t~~~gv~~l---~~~g~~W~~v 243 (254)
T pfam10647 183 R-APGGPVQYEVSVDGSPSTQLPS---GNLGAPVIAVAASPSTVYVTDDGALLQL---SRSGQGWREV 243 (254)
T ss_pred C-CCCCCEEEEEECCCCCCCCCCC---CCCCCCEEEECCCCCEEEEECCCCEEEE---CCCCCCCEEC
T ss_conf 5-8999267899527866766787---7765666885179843899848966994---8999975697